Query 003179
Match_columns 842
No_of_seqs 349 out of 1921
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 18:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245 Kinesin-like protein [ 100.0 3.4E-92 7.5E-97 815.1 32.4 395 1-398 3-427 (1221)
2 KOG0243 Kinesin-like protein [ 100.0 1.5E-88 3.2E-93 797.7 52.8 355 3-363 50-424 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 1.1E-90 2.4E-95 787.3 28.0 356 2-362 5-368 (574)
4 KOG0242 Kinesin-like protein [ 100.0 3.3E-87 7.1E-92 780.5 32.6 358 2-366 6-368 (675)
5 PLN03188 kinesin-12 family pro 100.0 2.4E-83 5.2E-88 759.6 36.2 350 2-360 98-470 (1320)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 8.9E-83 1.9E-87 708.5 30.7 340 1-351 6-353 (607)
7 KOG0241 Kinesin-like protein [ 100.0 1.1E-82 2.5E-87 723.6 32.0 414 2-424 4-438 (1714)
8 cd01370 KISc_KIP3_like Kinesin 100.0 4.1E-82 9E-87 688.9 34.2 325 3-329 1-338 (338)
9 cd01373 KISc_KLP2_like Kinesin 100.0 3.5E-81 7.5E-86 681.4 33.7 320 2-329 1-337 (337)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.1E-79 2.4E-84 671.7 34.6 321 2-327 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.2E-79 4.8E-84 671.2 36.0 334 2-336 1-356 (356)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.1E-77 8.9E-82 651.8 34.6 330 2-337 2-351 (352)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 4.3E-77 9.3E-82 647.9 34.4 324 2-329 1-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 4.3E-77 9.2E-82 645.5 33.6 313 2-327 1-322 (322)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 8.8E-77 1.9E-81 641.8 34.5 319 3-329 1-321 (321)
16 cd01376 KISc_KID_like Kinesin 100.0 1.3E-76 2.7E-81 640.8 34.5 313 3-327 1-319 (319)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 4E-76 8.6E-81 637.4 35.0 318 1-329 1-325 (325)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 1E-75 2.2E-80 637.6 33.7 321 3-330 2-341 (341)
19 cd01375 KISc_KIF9_like Kinesin 100.0 4.1E-75 8.8E-80 632.9 33.3 318 3-327 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 3.6E-73 7.9E-78 614.8 35.3 318 2-331 2-328 (329)
21 smart00129 KISc Kinesin motor, 100.0 1.7E-72 3.6E-77 610.2 35.6 329 3-336 1-335 (335)
22 cd00106 KISc Kinesin motor dom 100.0 1.8E-71 3.9E-76 599.5 35.5 321 3-327 1-328 (328)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 8E-73 1.7E-77 658.2 24.8 325 2-335 314-646 (670)
24 PF00225 Kinesin: Kinesin moto 100.0 7.5E-72 1.6E-76 604.1 23.3 319 9-329 1-335 (335)
25 KOG0244 Kinesin-like protein [ 100.0 4.2E-70 9.2E-75 633.8 22.8 376 10-397 1-384 (913)
26 KOG0247 Kinesin-like protein [ 100.0 3.1E-66 6.7E-71 587.7 33.3 332 1-335 30-442 (809)
27 KOG0246 Kinesin-like protein [ 100.0 5.2E-66 1.1E-70 573.0 29.0 320 2-333 208-545 (676)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.2E-62 2.6E-67 567.8 30.6 321 2-337 22-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 8.2E-51 1.8E-55 408.4 18.6 179 61-308 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.0 5.6E-08 1.2E-12 114.2 -11.2 251 3-270 306-566 (568)
31 PF09730 BicD: Microtubule-ass 96.7 2 4.3E-05 52.8 30.5 29 535-563 263-291 (717)
32 KOG4643 Uncharacterized coiled 96.5 0.42 9.1E-06 59.4 23.3 51 537-587 408-458 (1195)
33 KOG0995 Centromere-associated 95.0 0.8 1.7E-05 54.2 16.8 261 534-829 290-567 (581)
34 PF12128 DUF3584: Protein of u 94.7 3.8 8.2E-05 53.4 23.5 69 535-606 356-426 (1201)
35 PF12128 DUF3584: Protein of u 94.6 13 0.00027 48.8 27.7 77 45-129 55-142 (1201)
36 PRK02224 chromosome segregatio 94.2 3.9 8.5E-05 51.0 21.4 15 81-95 26-40 (880)
37 PF00308 Bac_DnaA: Bacterial d 94.0 0.033 7.1E-07 58.4 2.5 50 44-96 3-52 (219)
38 PRK06893 DNA replication initi 93.0 0.082 1.8E-06 55.6 3.5 48 44-97 11-58 (229)
39 COG0556 UvrB Helicase subunit 93.0 0.25 5.5E-06 58.2 7.6 91 44-139 3-101 (663)
40 PRK06620 hypothetical protein; 92.6 0.084 1.8E-06 55.3 2.9 50 43-96 10-62 (214)
41 PF00038 Filament: Intermediat 92.5 8.5 0.00019 42.1 18.4 84 708-791 190-273 (312)
42 PF10481 CENP-F_N: Cenp-F N-te 92.5 4.2 9E-05 44.6 15.3 76 728-803 96-189 (307)
43 PF04849 HAP1_N: HAP1 N-termin 91.6 4.9 0.00011 44.9 15.1 109 710-821 185-300 (306)
44 TIGR02169 SMC_prok_A chromosom 91.5 50 0.0011 42.2 29.2 14 82-95 27-40 (1164)
45 KOG0995 Centromere-associated 91.5 23 0.00049 42.6 21.0 109 689-802 406-540 (581)
46 COG1196 Smc Chromosome segrega 91.5 54 0.0012 42.9 26.6 23 70-95 19-41 (1163)
47 COG2805 PilT Tfp pilus assembl 90.4 0.16 3.6E-06 56.3 2.4 31 66-96 113-143 (353)
48 PRK00149 dnaA chromosomal repl 90.1 0.21 4.6E-06 57.6 3.0 51 43-96 116-166 (450)
49 TIGR02168 SMC_prok_B chromosom 89.5 17 0.00037 46.1 19.4 103 713-815 796-905 (1179)
50 KOG0239 Kinesin (KAR3 subfamil 89.4 0.38 8.3E-06 58.6 4.6 88 44-146 26-113 (670)
51 PRK09087 hypothetical protein; 89.4 0.27 5.9E-06 51.9 3.0 47 44-96 16-62 (226)
52 PRK12377 putative replication 89.3 0.38 8.3E-06 51.8 4.1 52 44-97 69-120 (248)
53 PRK05642 DNA replication initi 89.1 0.32 7E-06 51.4 3.3 46 44-96 14-63 (234)
54 PRK08084 DNA replication initi 89.1 0.34 7.5E-06 51.2 3.5 48 44-97 17-64 (235)
55 PF10473 CENP-F_leu_zip: Leuci 88.9 2.8 6.1E-05 41.9 9.4 118 712-829 16-133 (140)
56 PRK14086 dnaA chromosomal repl 88.7 0.25 5.5E-06 59.4 2.4 51 44-97 283-333 (617)
57 COG0593 DnaA ATPase involved i 88.7 0.3 6.4E-06 56.3 2.9 52 42-96 80-131 (408)
58 TIGR02168 SMC_prok_B chromosom 88.5 36 0.00077 43.3 21.1 16 80-95 25-40 (1179)
59 PHA02562 46 endonuclease subun 88.3 17 0.00037 42.9 17.2 58 715-772 332-389 (562)
60 PRK14088 dnaA chromosomal repl 88.3 0.35 7.5E-06 56.0 3.2 50 43-96 99-148 (440)
61 COG1196 Smc Chromosome segrega 88.3 23 0.00051 46.1 19.6 61 711-771 840-900 (1163)
62 smart00787 Spc7 Spc7 kinetocho 88.1 4.2 9.1E-05 45.5 11.2 129 707-835 145-291 (312)
63 PRK07952 DNA replication prote 88.1 0.53 1.1E-05 50.6 4.1 53 43-97 66-118 (244)
64 PRK06526 transposase; Provisio 87.8 0.24 5.2E-06 53.4 1.4 45 48-97 73-117 (254)
65 TIGR00362 DnaA chromosomal rep 87.8 0.4 8.6E-06 54.5 3.1 51 43-96 104-154 (405)
66 PF09726 Macoilin: Transmembra 87.5 29 0.00063 43.0 18.7 76 534-609 548-624 (697)
67 COG2804 PulE Type II secretory 87.1 0.76 1.6E-05 54.1 4.9 31 67-97 247-277 (500)
68 PRK08116 hypothetical protein; 87.1 0.42 9.1E-06 51.8 2.7 51 44-96 80-132 (268)
69 TIGR02169 SMC_prok_A chromosom 87.1 35 0.00075 43.6 20.0 50 716-765 402-451 (1164)
70 TIGR02928 orc1/cdc6 family rep 86.6 0.62 1.3E-05 51.5 3.7 38 58-96 20-58 (365)
71 PF04851 ResIII: Type III rest 86.5 0.48 1E-05 46.0 2.5 29 69-97 15-44 (184)
72 PRK00411 cdc6 cell division co 86.3 0.68 1.5E-05 51.8 3.9 39 57-96 34-73 (394)
73 cd00009 AAA The AAA+ (ATPases 86.2 0.62 1.3E-05 42.5 3.0 28 69-96 10-37 (151)
74 PRK11637 AmiB activator; Provi 86.2 73 0.0016 36.9 23.1 42 571-612 95-136 (428)
75 TIGR03420 DnaA_homol_Hda DnaA 85.7 0.67 1.5E-05 47.5 3.2 47 44-96 10-56 (226)
76 PRK14087 dnaA chromosomal repl 85.2 0.56 1.2E-05 54.5 2.7 49 45-96 111-159 (450)
77 PF07888 CALCOCO1: Calcium bin 85.0 28 0.0006 42.0 16.2 56 712-767 289-344 (546)
78 KOG0994 Extracellular matrix g 84.6 1.5E+02 0.0031 39.0 24.2 49 380-428 1444-1492(1758)
79 PF13870 DUF4201: Domain of un 84.2 5.6 0.00012 40.5 9.0 89 713-803 77-165 (177)
80 PRK08181 transposase; Validate 84.1 0.94 2E-05 49.4 3.6 46 47-97 79-125 (269)
81 PRK08939 primosomal protein Dn 83.9 0.62 1.3E-05 51.6 2.1 51 46-97 124-175 (306)
82 PF07888 CALCOCO1: Calcium bin 83.8 5.4 0.00012 47.7 9.8 63 710-772 161-223 (546)
83 PRK08727 hypothetical protein; 83.7 0.76 1.6E-05 48.5 2.6 45 44-96 14-59 (233)
84 PRK08903 DnaA regulatory inact 83.5 1.1 2.5E-05 46.4 3.8 48 44-96 13-60 (227)
85 PRK06835 DNA replication prote 83.4 0.59 1.3E-05 52.3 1.8 31 66-97 172-202 (329)
86 PRK04778 septation ring format 82.8 1.2E+02 0.0026 36.7 27.1 53 368-420 104-156 (569)
87 COG1474 CDC6 Cdc6-related prot 81.6 1.3 2.7E-05 50.5 3.5 26 70-95 33-59 (366)
88 cd00046 DEXDc DEAD-like helica 81.5 0.63 1.4E-05 42.0 0.9 17 81-97 3-19 (144)
89 KOG0999 Microtubule-associated 80.9 76 0.0016 38.3 17.2 27 776-802 229-255 (772)
90 PRK03918 chromosome segregatio 80.7 90 0.002 39.1 19.4 14 82-95 27-40 (880)
91 KOG0250 DNA repair protein RAD 80.0 2E+02 0.0043 37.5 27.7 31 534-564 657-688 (1074)
92 PF13245 AAA_19: Part of AAA d 79.5 1.1 2.4E-05 39.8 1.7 26 70-96 3-28 (76)
93 smart00382 AAA ATPases associa 79.4 0.81 1.8E-05 41.1 0.9 18 79-96 3-20 (148)
94 KOG0994 Extracellular matrix g 79.0 2.2E+02 0.0049 37.4 24.1 43 316-361 1177-1219(1758)
95 PRK06921 hypothetical protein; 79.0 1.6 3.4E-05 47.4 3.1 32 66-97 102-136 (266)
96 PRK10436 hypothetical protein; 78.9 1.1 2.3E-05 52.6 1.8 28 69-96 209-236 (462)
97 TIGR02538 type_IV_pilB type IV 78.8 1.1 2.3E-05 53.7 1.9 29 69-97 307-335 (564)
98 COG1484 DnaC DNA replication p 78.8 1.9 4.1E-05 46.6 3.5 51 44-97 74-124 (254)
99 PF00270 DEAD: DEAD/DEAH box h 78.4 1.2 2.7E-05 42.9 1.9 26 69-96 7-32 (169)
100 TIGR02533 type_II_gspE general 78.1 1.3 2.8E-05 52.2 2.2 28 69-96 233-260 (486)
101 PF13401 AAA_22: AAA domain; P 77.8 0.79 1.7E-05 42.7 0.3 19 78-96 4-22 (131)
102 TIGR01242 26Sp45 26S proteasom 77.1 7 0.00015 43.9 7.6 52 45-96 118-174 (364)
103 PF08317 Spc7: Spc7 kinetochor 77.0 20 0.00043 40.2 11.0 49 708-756 151-199 (325)
104 PRK12422 chromosomal replicati 76.9 2.1 4.6E-05 49.9 3.5 51 43-96 105-159 (445)
105 KOG0977 Nuclear envelope prote 76.8 65 0.0014 38.9 15.5 102 728-831 149-258 (546)
106 PLN03229 acetyl-coenzyme A car 76.7 85 0.0018 39.2 16.7 32 789-829 648-680 (762)
107 TIGR01420 pilT_fam pilus retra 76.5 1.5 3.2E-05 49.1 2.1 29 68-96 112-140 (343)
108 PTZ00454 26S protease regulato 76.4 1.8 3.9E-05 49.8 2.7 52 44-95 140-196 (398)
109 smart00053 DYNc Dynamin, GTPas 76.3 4.9 0.00011 43.3 5.8 54 168-239 85-138 (240)
110 KOG0980 Actin-binding protein 76.2 1.6E+02 0.0035 37.4 18.8 35 534-568 336-372 (980)
111 PF00437 T2SE: Type II/IV secr 76.2 1.4 3E-05 47.1 1.6 19 78-96 127-145 (270)
112 cd01131 PilT Pilus retraction 75.9 1.2 2.5E-05 45.9 0.9 19 78-96 1-19 (198)
113 KOG0250 DNA repair protein RAD 75.8 76 0.0017 41.0 16.3 86 715-800 367-460 (1074)
114 KOG0989 Replication factor C, 75.7 2.4 5.2E-05 47.5 3.3 45 52-96 30-75 (346)
115 KOG0964 Structural maintenance 75.6 75 0.0016 40.7 15.9 66 701-766 411-478 (1200)
116 PF05673 DUF815: Protein of un 75.5 4.2 9.1E-05 44.2 5.0 129 45-203 23-154 (249)
117 PRK10884 SH3 domain-containing 75.5 28 0.00061 36.9 11.0 70 341-410 91-166 (206)
118 PF12846 AAA_10: AAA-like doma 75.5 1.2 2.5E-05 47.0 0.8 19 78-96 1-19 (304)
119 PF13604 AAA_30: AAA domain; P 75.1 1.8 3.8E-05 44.7 2.0 29 68-96 8-36 (196)
120 TIGR02525 plasmid_TraJ plasmid 75.0 1.8 3.9E-05 49.4 2.2 27 69-96 141-167 (372)
121 COG1579 Zn-ribbon protein, pos 75.0 24 0.00053 38.3 10.5 84 718-801 29-114 (239)
122 PF01935 DUF87: Domain of unkn 74.9 1.2 2.6E-05 46.2 0.7 16 81-96 26-41 (229)
123 PTZ00112 origin recognition co 74.4 3.1 6.7E-05 52.5 4.1 27 70-96 771-799 (1164)
124 TIGR02524 dot_icm_DotB Dot/Icm 74.4 1.9 4E-05 49.0 2.1 24 73-96 129-152 (358)
125 PRK03918 chromosome segregatio 74.4 1.5E+02 0.0032 37.2 18.7 17 818-834 422-438 (880)
126 PF01637 Arch_ATPase: Archaeal 74.1 1.8 3.8E-05 43.7 1.7 29 68-96 10-38 (234)
127 PHA02562 46 endonuclease subun 74.0 1.9E+02 0.0041 34.2 18.6 15 80-94 29-43 (562)
128 KOG4360 Uncharacterized coiled 73.8 27 0.00059 41.5 11.1 87 721-807 199-285 (596)
129 PRK10869 recombination and rep 73.4 56 0.0012 39.4 14.1 72 714-788 307-378 (553)
130 PRK09183 transposase/IS protei 72.8 1.8 4E-05 46.6 1.6 45 48-97 77-121 (259)
131 TIGR00631 uvrb excinuclease AB 72.7 4.6 9.9E-05 49.4 5.0 89 46-139 2-98 (655)
132 PRK03992 proteasome-activating 72.4 8.3 0.00018 44.1 6.7 51 45-95 127-182 (389)
133 TIGR03015 pepcterm_ATPase puta 72.3 3.6 7.7E-05 43.4 3.5 25 72-96 37-61 (269)
134 TIGR00606 rad50 rad50. This fa 71.9 3.5E+02 0.0076 36.2 31.8 22 791-812 1055-1076(1311)
135 cd01129 PulE-GspE PulE/GspE Th 71.5 11 0.00023 41.0 7.0 28 69-96 71-98 (264)
136 COG1201 Lhr Lhr-like helicases 71.4 4.2 9.1E-05 50.8 4.3 25 69-95 30-54 (814)
137 PF01695 IstB_IS21: IstB-like 71.4 2.7 5.8E-05 42.9 2.3 19 79-97 48-66 (178)
138 PF13086 AAA_11: AAA domain; P 71.4 2.1 4.5E-05 43.1 1.5 27 69-96 9-35 (236)
139 PTZ00361 26 proteosome regulat 71.2 4.3 9.3E-05 47.4 4.1 49 47-95 181-234 (438)
140 PRK12402 replication factor C 71.2 3.3 7.1E-05 45.1 3.1 42 47-96 13-54 (337)
141 PRK11637 AmiB activator; Provi 71.0 55 0.0012 37.9 13.0 73 343-415 47-121 (428)
142 KOG0946 ER-Golgi vesicle-tethe 70.7 36 0.00078 42.5 11.6 46 537-582 650-695 (970)
143 PRK04863 mukB cell division pr 70.5 4E+02 0.0087 36.3 27.5 105 711-833 511-621 (1486)
144 KOG4674 Uncharacterized conser 70.4 1.7E+02 0.0036 40.2 18.1 78 537-614 80-171 (1822)
145 PHA02544 44 clamp loader, smal 70.0 3.1 6.7E-05 45.2 2.5 22 75-96 39-61 (316)
146 PF00004 AAA: ATPase family as 69.4 1.8 4E-05 39.9 0.5 15 81-95 1-15 (132)
147 PF05970 PIF1: PIF1-like helic 69.3 3.5 7.5E-05 46.6 2.8 36 56-95 4-39 (364)
148 PF12718 Tropomyosin_1: Tropom 68.4 90 0.0019 31.2 12.2 62 710-771 77-138 (143)
149 PRK02224 chromosome segregatio 68.0 3.3E+02 0.0071 34.4 29.8 89 711-799 604-700 (880)
150 PF00580 UvrD-helicase: UvrD/R 67.8 2.4 5.3E-05 44.9 1.1 23 74-96 9-31 (315)
151 smart00487 DEXDc DEAD-like hel 67.7 3.8 8.3E-05 39.4 2.4 27 70-97 17-43 (201)
152 TIGR00606 rad50 rad50. This fa 67.5 4.2E+02 0.0092 35.4 31.0 27 537-563 902-928 (1311)
153 COG1222 RPT1 ATP-dependent 26S 67.4 8.7 0.00019 44.0 5.3 115 5-119 96-243 (406)
154 TIGR02782 TrbB_P P-type conjug 67.1 3.2 6.9E-05 45.9 1.9 29 67-96 122-150 (299)
155 PF00448 SRP54: SRP54-type pro 67.0 2.2 4.8E-05 44.3 0.6 17 80-96 3-19 (196)
156 PF13479 AAA_24: AAA domain 66.3 2.8 6.2E-05 43.6 1.3 20 78-97 3-22 (213)
157 PF05911 DUF869: Plant protein 66.3 2.6E+02 0.0056 35.4 17.9 100 714-814 149-289 (769)
158 PRK13894 conjugal transfer ATP 65.7 3.9 8.5E-05 45.7 2.3 28 68-96 139-166 (319)
159 COG5008 PilU Tfp pilus assembl 65.5 4.7 0.0001 44.6 2.7 30 67-96 116-145 (375)
160 PF13207 AAA_17: AAA domain; P 65.2 2.7 5.8E-05 38.8 0.7 16 80-95 1-16 (121)
161 KOG0161 Myosin class II heavy 64.7 5.7E+02 0.012 35.9 28.5 48 373-420 1066-1113(1930)
162 COG5185 HEC1 Protein involved 64.2 2.5E+02 0.0053 33.7 15.9 145 656-829 453-608 (622)
163 PF10174 Cast: RIM-binding pro 64.0 2.2E+02 0.0048 36.1 16.8 230 533-813 338-606 (775)
164 PHA00729 NTP-binding motif con 63.9 5.7 0.00012 42.6 3.0 31 66-96 5-35 (226)
165 PF14662 CCDC155: Coiled-coil 63.8 49 0.0011 34.9 9.5 67 345-411 38-109 (193)
166 PF04156 IncA: IncA protein; 63.4 37 0.0008 34.6 8.6 30 732-761 121-150 (191)
167 cd01130 VirB11-like_ATPase Typ 63.3 5 0.00011 40.7 2.4 28 68-96 16-43 (186)
168 PRK12723 flagellar biosynthesi 63.3 7.5 0.00016 44.8 4.0 19 78-96 174-192 (388)
169 PRK13900 type IV secretion sys 63.1 4.7 0.0001 45.3 2.3 29 67-96 150-178 (332)
170 PF00038 Filament: Intermediat 63.1 2.4E+02 0.0051 31.0 20.3 67 538-610 118-186 (312)
171 COG0497 RecN ATPase involved i 62.4 1E+02 0.0022 37.5 13.0 59 714-772 308-373 (557)
172 COG1340 Uncharacterized archae 62.4 2.7E+02 0.0059 31.4 20.0 103 707-824 132-234 (294)
173 PLN00020 ribulose bisphosphate 62.2 7.2 0.00016 45.1 3.5 51 44-94 110-164 (413)
174 PF13191 AAA_16: AAA ATPase do 61.9 2.3 5E-05 41.7 -0.4 22 74-95 20-41 (185)
175 cd00268 DEADc DEAD-box helicas 61.2 5.8 0.00013 39.9 2.4 23 70-94 30-52 (203)
176 TIGR03499 FlhF flagellar biosy 61.0 8.8 0.00019 42.0 3.9 17 80-96 196-212 (282)
177 COG0419 SbcC ATPase involved i 60.8 1.5E+02 0.0033 37.8 15.0 19 77-95 24-42 (908)
178 KOG0996 Structural maintenance 60.8 5.3E+02 0.011 34.3 19.3 40 568-607 415-454 (1293)
179 PRK13833 conjugal transfer pro 60.6 5 0.00011 45.1 1.9 28 68-96 135-162 (323)
180 KOG4674 Uncharacterized conser 60.5 4.9E+02 0.011 36.1 19.6 43 571-613 744-789 (1822)
181 PF13851 GAS: Growth-arrest sp 60.0 2.3E+02 0.005 29.9 14.2 52 731-782 97-148 (201)
182 TIGR02903 spore_lon_C ATP-depe 59.9 6 0.00013 48.0 2.6 42 46-95 151-192 (615)
183 PTZ00424 helicase 45; Provisio 59.8 5.4 0.00012 44.7 2.0 26 68-95 57-82 (401)
184 PRK04778 septation ring format 59.7 3.9E+02 0.0085 32.4 17.7 72 539-610 167-240 (569)
185 KOG0977 Nuclear envelope prote 59.2 46 0.00099 40.2 9.5 77 728-804 93-176 (546)
186 PF04111 APG6: Autophagy prote 59.1 28 0.0006 39.1 7.4 106 719-831 15-136 (314)
187 PF02562 PhoH: PhoH-like prote 59.0 6.5 0.00014 41.5 2.4 19 77-95 18-36 (205)
188 PLN03025 replication factor C 58.9 6.9 0.00015 43.2 2.6 22 75-96 31-52 (319)
189 COG4962 CpaF Flp pilus assembl 58.8 6.1 0.00013 44.9 2.2 73 68-146 164-270 (355)
190 PF09726 Macoilin: Transmembra 58.7 53 0.0011 40.9 10.3 29 788-816 543-571 (697)
191 PF13671 AAA_33: AAA domain; P 58.7 4 8.7E-05 38.6 0.7 15 81-95 2-16 (143)
192 PF01580 FtsK_SpoIIIE: FtsK/Sp 58.5 3.6 7.8E-05 42.0 0.3 17 80-96 40-56 (205)
193 PF02183 HALZ: Homeobox associ 58.5 18 0.00039 29.6 4.3 33 738-770 9-41 (45)
194 PF00910 RNA_helicase: RNA hel 58.5 3.4 7.4E-05 38.3 0.2 26 81-116 1-26 (107)
195 PF12795 MscS_porin: Mechanose 58.2 2.6E+02 0.0056 29.9 15.8 59 709-767 153-211 (240)
196 PF00261 Tropomyosin: Tropomyo 58.1 57 0.0012 34.9 9.3 40 539-578 3-42 (237)
197 PF02183 HALZ: Homeobox associ 58.0 26 0.00057 28.6 5.1 40 725-764 3-42 (45)
198 PRK11776 ATP-dependent RNA hel 57.5 6.7 0.00014 45.3 2.3 25 69-95 34-58 (460)
199 KOG0996 Structural maintenance 57.2 2.6E+02 0.0056 36.9 15.6 62 711-772 505-566 (1293)
200 PF10481 CENP-F_N: Cenp-F N-te 57.1 48 0.001 36.7 8.4 83 724-806 43-125 (307)
201 PF11559 ADIP: Afadin- and alp 57.0 60 0.0013 32.1 8.7 49 717-765 56-104 (151)
202 KOG1029 Endocytic adaptor prot 57.0 2.5E+02 0.0055 35.5 15.0 67 710-776 441-507 (1118)
203 PRK06547 hypothetical protein; 56.8 9 0.0002 39.0 2.9 29 67-95 4-32 (172)
204 PRK10865 protein disaggregatio 56.8 5.3E+02 0.012 33.0 19.4 31 67-97 188-218 (857)
205 PF10168 Nup88: Nuclear pore c 56.7 4.1E+02 0.0088 33.5 17.3 36 771-806 680-715 (717)
206 COG0419 SbcC ATPase involved i 56.7 3E+02 0.0065 35.2 16.7 80 714-800 362-441 (908)
207 PRK14961 DNA polymerase III su 56.4 7.3 0.00016 44.0 2.4 41 47-95 14-55 (363)
208 PF07728 AAA_5: AAA domain (dy 56.2 4.2 9.2E-05 38.6 0.4 15 81-95 2-16 (139)
209 PF13851 GAS: Growth-arrest sp 56.2 37 0.0008 35.8 7.3 90 729-818 81-171 (201)
210 PF05622 HOOK: HOOK protein; 56.0 3.8 8.2E-05 50.4 0.0 11 107-117 35-45 (713)
211 COG1223 Predicted ATPase (AAA+ 56.0 10 0.00022 42.1 3.2 42 79-120 152-210 (368)
212 PF09325 Vps5: Vps5 C terminal 55.8 1.4E+02 0.0029 31.2 11.5 23 789-811 202-224 (236)
213 PRK13851 type IV secretion sys 55.7 4.9 0.00011 45.5 0.9 28 68-96 153-180 (344)
214 TIGR03185 DNA_S_dndD DNA sulfu 55.7 53 0.0011 40.2 9.6 35 710-744 213-247 (650)
215 PF06048 DUF927: Domain of unk 55.5 11 0.00023 41.4 3.3 32 63-95 179-210 (286)
216 TIGR02881 spore_V_K stage V sp 55.5 12 0.00025 40.1 3.6 19 78-96 42-60 (261)
217 PF07724 AAA_2: AAA domain (Cd 55.4 5.5 0.00012 40.5 1.1 17 79-95 4-20 (171)
218 PF13238 AAA_18: AAA domain; P 55.4 4.7 0.0001 36.9 0.6 15 81-95 1-15 (129)
219 PF00063 Myosin_head: Myosin h 55.3 8.6 0.00019 47.1 2.9 36 59-95 66-102 (689)
220 PRK11192 ATP-dependent RNA hel 55.3 7.5 0.00016 44.4 2.2 25 69-95 31-55 (434)
221 KOG0964 Structural maintenance 55.3 6E+02 0.013 33.2 24.3 39 571-609 719-757 (1200)
222 PRK00440 rfc replication facto 55.3 9.8 0.00021 41.0 3.0 22 75-96 35-56 (319)
223 CHL00081 chlI Mg-protoporyphyr 55.1 5.2 0.00011 45.4 0.9 44 44-95 12-55 (350)
224 PRK13764 ATPase; Provisional 54.6 6.9 0.00015 47.5 1.9 21 76-96 255-275 (602)
225 PF10186 Atg14: UV radiation r 54.5 73 0.0016 34.2 9.5 20 795-814 131-150 (302)
226 COG1419 FlhF Flagellar GTP-bin 54.5 11 0.00023 43.8 3.3 39 58-96 179-221 (407)
227 KOG0727 26S proteasome regulat 54.4 8.1 0.00017 42.5 2.1 73 47-119 153-247 (408)
228 KOG0018 Structural maintenance 54.0 6.5E+02 0.014 33.2 25.5 38 523-560 636-675 (1141)
229 TIGR00635 ruvB Holliday juncti 53.8 10 0.00022 41.1 2.8 40 56-96 7-48 (305)
230 PF09730 BicD: Microtubule-ass 53.6 54 0.0012 40.8 9.1 93 709-801 58-181 (717)
231 PF03215 Rad17: Rad17 cell cyc 52.9 9 0.0002 45.7 2.5 30 67-96 32-63 (519)
232 PRK13342 recombination factor 52.8 7.5 0.00016 44.6 1.7 28 69-96 27-54 (413)
233 PF07693 KAP_NTPase: KAP famil 52.7 11 0.00023 41.0 2.8 20 76-95 18-37 (325)
234 KOG0971 Microtubule-associated 51.9 6.6E+02 0.014 32.6 23.6 73 735-813 526-600 (1243)
235 PRK14722 flhF flagellar biosyn 51.7 6.6 0.00014 45.1 1.0 19 78-96 137-155 (374)
236 PRK04837 ATP-dependent RNA hel 51.7 8.9 0.00019 43.8 2.1 25 69-95 38-62 (423)
237 TIGR00634 recN DNA repair prot 51.7 2E+02 0.0043 34.7 13.4 14 82-95 26-39 (563)
238 TIGR01241 FtsH_fam ATP-depende 51.5 6.6 0.00014 46.1 1.0 52 44-96 50-106 (495)
239 PF06414 Zeta_toxin: Zeta toxi 51.1 6.9 0.00015 40.1 1.0 21 76-96 13-33 (199)
240 PF03962 Mnd1: Mnd1 family; I 50.4 1.2E+02 0.0026 31.7 9.9 94 670-767 32-129 (188)
241 PRK04195 replication factor C 50.3 8 0.00017 45.3 1.5 30 67-96 27-57 (482)
242 PF10205 KLRAQ: Predicted coil 50.1 2.1E+02 0.0045 27.5 10.4 46 371-416 28-73 (102)
243 COG3883 Uncharacterized protei 49.6 2E+02 0.0043 31.9 11.7 68 537-611 45-112 (265)
244 PF06309 Torsin: Torsin; Inte 49.5 8 0.00017 38.1 1.1 25 81-115 56-80 (127)
245 PRK10590 ATP-dependent RNA hel 49.4 11 0.00024 43.7 2.4 25 69-95 31-55 (456)
246 KOG1962 B-cell receptor-associ 48.9 31 0.00067 37.0 5.4 56 711-766 149-204 (216)
247 TIGR00348 hsdR type I site-spe 48.9 13 0.00029 45.5 3.1 31 66-97 247-282 (667)
248 KOG0926 DEAH-box RNA helicase 48.9 11 0.00024 47.0 2.3 35 78-112 271-319 (1172)
249 KOG2228 Origin recognition com 48.8 35 0.00077 39.1 6.0 125 53-186 28-194 (408)
250 KOG3433 Protein involved in me 48.8 86 0.0019 33.0 8.3 98 708-809 83-180 (203)
251 TIGR01243 CDC48 AAA family ATP 48.7 21 0.00047 44.1 4.9 52 44-95 173-229 (733)
252 KOG0933 Structural maintenance 48.7 7.6E+02 0.017 32.4 19.2 46 714-759 816-861 (1174)
253 COG3883 Uncharacterized protei 48.7 1.2E+02 0.0025 33.7 9.8 45 370-414 60-104 (265)
254 TIGR02788 VirB11 P-type DNA tr 48.5 12 0.00027 41.3 2.5 29 67-96 134-162 (308)
255 PF14197 Cep57_CLD_2: Centroso 48.4 79 0.0017 28.1 7.0 61 745-805 2-62 (69)
256 PF11365 DUF3166: Protein of u 48.1 43 0.00094 31.7 5.6 40 539-578 3-42 (96)
257 cd01120 RecA-like_NTPases RecA 48.1 7.5 0.00016 36.7 0.6 16 81-96 2-17 (165)
258 PF05496 RuvB_N: Holliday junc 48.1 22 0.00048 38.5 4.2 42 52-94 23-66 (233)
259 PF05729 NACHT: NACHT domain 47.9 8.7 0.00019 36.7 1.1 17 80-96 2-18 (166)
260 PRK11448 hsdR type I restricti 47.9 11 0.00023 49.1 2.1 30 67-97 423-452 (1123)
261 PF03962 Mnd1: Mnd1 family; I 47.9 1E+02 0.0022 32.3 8.8 63 739-802 67-129 (188)
262 PRK10416 signal recognition pa 47.4 17 0.00038 40.6 3.5 19 78-96 114-132 (318)
263 PRK10536 hypothetical protein; 47.1 11 0.00023 41.4 1.7 42 45-96 51-92 (262)
264 PRK00080 ruvB Holliday junctio 47.1 14 0.00031 40.8 2.8 18 79-96 52-69 (328)
265 PF09728 Taxilin: Myosin-like 47.0 4.7E+02 0.01 29.5 18.0 242 537-800 43-303 (309)
266 COG2433 Uncharacterized conser 47.0 89 0.0019 38.2 9.2 16 103-118 164-179 (652)
267 KOG0946 ER-Golgi vesicle-tethe 47.0 1.9E+02 0.004 36.7 11.9 26 539-564 673-698 (970)
268 TIGR00618 sbcc exonuclease Sbc 46.6 16 0.00035 46.9 3.5 17 79-95 27-43 (1042)
269 smart00242 MYSc Myosin. Large 46.6 18 0.0004 44.5 3.8 37 59-95 73-109 (677)
270 PF07926 TPR_MLP1_2: TPR/MLP1/ 46.5 1.3E+02 0.0029 29.4 9.0 66 730-798 55-120 (132)
271 TIGR00614 recQ_fam ATP-depende 46.2 14 0.0003 43.1 2.6 26 68-95 18-43 (470)
272 PF04420 CHD5: CHD5-like prote 46.0 83 0.0018 31.9 7.8 49 342-390 39-87 (161)
273 smart00489 DEXDc3 DEAD-like he 46.0 20 0.00042 39.5 3.6 36 55-96 10-45 (289)
274 smart00488 DEXDc2 DEAD-like he 46.0 20 0.00042 39.5 3.6 36 55-96 10-45 (289)
275 PF13476 AAA_23: AAA domain; P 46.0 9.1 0.0002 37.8 0.9 17 79-95 20-36 (202)
276 KOG2129 Uncharacterized conser 46.0 1.2E+02 0.0027 35.5 9.7 59 343-402 253-311 (552)
277 TIGR02902 spore_lonB ATP-depen 45.8 14 0.0003 44.1 2.6 41 46-94 62-102 (531)
278 PRK10929 putative mechanosensi 45.7 4.1E+02 0.0089 35.1 15.4 55 708-762 175-229 (1109)
279 COG2433 Uncharacterized conser 45.7 99 0.0021 37.8 9.3 27 383-409 481-507 (652)
280 TIGR00376 DNA helicase, putati 45.4 13 0.00029 45.3 2.3 17 80-96 175-191 (637)
281 PF15070 GOLGA2L5: Putative go 45.3 6.9E+02 0.015 31.0 17.7 55 710-764 91-148 (617)
282 PF00261 Tropomyosin: Tropomyo 45.2 4.2E+02 0.009 28.4 19.2 44 720-763 113-156 (237)
283 PRK11331 5-methylcytosine-spec 45.2 14 0.0003 43.6 2.4 27 294-324 320-346 (459)
284 PRK12704 phosphodiesterase; Pr 45.1 1.6E+02 0.0035 35.4 11.2 76 710-790 90-168 (520)
285 COG5185 HEC1 Protein involved 45.1 2.2E+02 0.0048 34.0 11.6 91 709-799 291-398 (622)
286 PRK14962 DNA polymerase III su 45.0 16 0.00035 43.1 2.8 42 47-96 12-54 (472)
287 TIGR02030 BchI-ChlI magnesium 44.8 13 0.00028 42.0 2.0 43 46-96 1-43 (337)
288 PF10146 zf-C4H2: Zinc finger- 44.7 71 0.0015 34.5 7.4 56 735-794 26-81 (230)
289 PF12775 AAA_7: P-loop contain 44.7 13 0.00028 40.6 1.9 27 69-96 25-51 (272)
290 PRK10865 protein disaggregatio 44.6 15 0.00032 46.5 2.6 44 47-95 566-615 (857)
291 PF00735 Septin: Septin; Inte 44.6 7.3 0.00016 42.8 -0.0 20 75-94 1-20 (281)
292 PHA02244 ATPase-like protein 44.5 22 0.00048 41.0 3.8 46 45-95 91-136 (383)
293 PRK00771 signal recognition pa 44.2 25 0.00054 41.2 4.2 19 78-96 95-113 (437)
294 KOG1962 B-cell receptor-associ 44.1 1.2E+02 0.0025 32.8 8.7 54 347-402 131-184 (216)
295 PRK14974 cell division protein 44.0 28 0.00061 39.4 4.5 19 78-96 140-158 (336)
296 KOG0161 Myosin class II heavy 44.0 1.1E+03 0.025 33.1 28.0 73 726-802 1103-1176(1930)
297 PF12325 TMF_TATA_bd: TATA ele 43.7 1.9E+02 0.0042 28.3 9.5 20 401-420 93-112 (120)
298 KOG0335 ATP-dependent RNA heli 43.5 11 0.00023 44.6 1.1 22 74-97 109-130 (482)
299 KOG2543 Origin recognition com 43.5 11 0.00024 43.5 1.2 38 80-136 32-69 (438)
300 PF11559 ADIP: Afadin- and alp 43.4 1.3E+02 0.0028 29.8 8.6 86 726-811 44-129 (151)
301 PRK04328 hypothetical protein; 43.3 17 0.00036 39.0 2.4 28 67-94 9-39 (249)
302 COG1219 ClpX ATP-dependent pro 43.2 11 0.00024 42.8 1.0 16 79-94 98-113 (408)
303 PF10267 Tmemb_cc2: Predicted 43.1 6.2E+02 0.013 29.8 20.4 28 537-564 212-239 (395)
304 TIGR03819 heli_sec_ATPase heli 43.0 28 0.00062 39.3 4.3 29 67-96 168-196 (340)
305 TIGR02640 gas_vesic_GvpN gas v 43.0 21 0.00046 38.4 3.2 27 67-95 12-38 (262)
306 cd01384 MYSc_type_XI Myosin mo 42.9 23 0.00051 43.7 3.9 35 60-95 70-105 (674)
307 PF15290 Syntaphilin: Golgi-lo 42.8 1.9E+02 0.004 32.5 10.1 9 352-360 70-78 (305)
308 KOG2751 Beclin-like protein [S 42.6 1.6E+02 0.0034 34.8 10.0 104 708-823 145-251 (447)
309 PRK13341 recombination factor 42.6 16 0.00036 45.3 2.5 22 75-96 49-70 (725)
310 cd01383 MYSc_type_VIII Myosin 42.2 26 0.00056 43.3 4.1 35 60-95 74-109 (677)
311 PF10236 DAP3: Mitochondrial r 42.1 18 0.0004 40.2 2.6 24 73-96 18-41 (309)
312 PF13173 AAA_14: AAA domain 42.1 12 0.00025 35.6 1.0 18 79-96 3-20 (128)
313 PF02456 Adeno_IVa2: Adenoviru 41.8 11 0.00023 42.7 0.7 66 81-146 90-187 (369)
314 KOG3859 Septins (P-loop GTPase 41.8 15 0.00032 41.0 1.7 24 72-95 36-59 (406)
315 cd01123 Rad51_DMC1_radA Rad51_ 41.8 14 0.0003 38.3 1.5 29 67-95 5-36 (235)
316 smart00763 AAA_PrkA PrkA AAA d 41.7 28 0.00061 39.9 4.0 42 48-94 49-94 (361)
317 PRK11634 ATP-dependent RNA hel 41.7 16 0.00034 44.7 2.2 25 69-95 36-60 (629)
318 cd00124 MYSc Myosin motor doma 41.5 25 0.00054 43.3 3.9 36 59-95 67-103 (679)
319 PF08317 Spc7: Spc7 kinetochor 41.4 2E+02 0.0044 32.3 10.6 52 369-420 209-267 (325)
320 COG4026 Uncharacterized protei 41.2 58 0.0012 35.2 5.9 57 714-770 143-199 (290)
321 CHL00176 ftsH cell division pr 41.1 12 0.00027 45.7 1.2 17 79-95 217-233 (638)
322 TIGR02237 recomb_radB DNA repa 41.1 15 0.00033 37.4 1.7 18 78-95 12-29 (209)
323 PF05130 FlgN: FlgN protein; 41.0 42 0.00091 31.5 4.6 36 732-767 35-70 (143)
324 PRK10884 SH3 domain-containing 41.0 84 0.0018 33.4 7.1 57 710-769 97-153 (206)
325 CHL00118 atpG ATP synthase CF0 41.0 2.4E+02 0.0051 28.3 10.0 88 722-809 55-152 (156)
326 cd01385 MYSc_type_IX Myosin mo 40.9 26 0.00056 43.4 3.9 37 59-96 75-112 (692)
327 cd01381 MYSc_type_VII Myosin m 40.9 27 0.00059 43.0 4.1 36 60-96 68-104 (671)
328 cd02021 GntK Gluconate kinase 40.8 12 0.00025 36.1 0.7 15 81-95 2-16 (150)
329 TIGR03158 cas3_cyano CRISPR-as 40.7 19 0.00041 40.6 2.5 26 70-95 6-31 (357)
330 PRK05703 flhF flagellar biosyn 40.7 12 0.00026 43.5 0.9 18 79-96 222-239 (424)
331 cd01378 MYSc_type_I Myosin mot 40.6 27 0.00058 43.1 3.9 36 60-96 68-104 (674)
332 cd07673 F-BAR_FCHO2 The F-BAR 40.6 3.4E+02 0.0074 29.8 12.0 100 729-829 125-243 (269)
333 TIGR01359 UMP_CMP_kin_fam UMP- 40.4 13 0.00027 37.0 1.0 14 81-94 2-15 (183)
334 PF06160 EzrA: Septation ring 40.3 7.6E+02 0.016 30.0 25.9 127 537-670 252-388 (560)
335 PRK00131 aroK shikimate kinase 40.1 14 0.0003 36.0 1.1 17 79-95 5-21 (175)
336 PRK09270 nucleoside triphospha 40.1 31 0.00067 36.2 3.8 37 59-95 13-50 (229)
337 cd01382 MYSc_type_VI Myosin mo 40.1 25 0.00055 43.7 3.6 35 60-95 73-108 (717)
338 cd01387 MYSc_type_XV Myosin mo 40.1 28 0.0006 43.0 3.9 35 60-95 69-104 (677)
339 cd01850 CDC_Septin CDC/Septin. 40.0 13 0.00029 40.5 1.2 21 75-95 1-21 (276)
340 KOG0340 ATP-dependent RNA heli 39.8 30 0.00065 39.8 3.8 28 68-97 36-63 (442)
341 PF08172 CASP_C: CASP C termin 39.7 1.5E+02 0.0032 32.4 9.0 36 546-581 1-36 (248)
342 cd01377 MYSc_type_II Myosin mo 39.6 28 0.0006 43.2 3.8 36 59-95 72-108 (693)
343 PRK05580 primosome assembly pr 39.5 13 0.00027 45.8 0.9 18 79-96 163-180 (679)
344 TIGR01618 phage_P_loop phage n 39.5 11 0.00024 40.1 0.4 20 78-97 12-31 (220)
345 PF12072 DUF3552: Domain of un 39.5 3.2E+02 0.007 28.6 11.2 78 708-790 84-164 (201)
346 TIGR03319 YmdA_YtgF conserved 39.2 2.3E+02 0.005 34.1 11.2 76 710-790 84-162 (514)
347 PRK04537 ATP-dependent RNA hel 39.1 17 0.00037 43.7 1.9 25 69-95 39-63 (572)
348 PF09789 DUF2353: Uncharacteri 38.8 2.5E+02 0.0053 32.0 10.7 98 705-802 20-152 (319)
349 TIGR01817 nifA Nif-specific re 38.7 18 0.00039 42.9 2.0 45 45-95 192-236 (534)
350 KOG0978 E3 ubiquitin ligase in 38.4 9.2E+02 0.02 30.4 16.4 118 710-835 528-648 (698)
351 PF07798 DUF1640: Protein of u 38.3 2E+02 0.0044 29.4 9.3 77 742-831 74-154 (177)
352 PF08581 Tup_N: Tup N-terminal 38.1 2.1E+02 0.0046 26.1 8.3 75 733-811 3-78 (79)
353 TIGR03689 pup_AAA proteasome A 38.1 13 0.00028 44.5 0.7 16 80-95 218-233 (512)
354 PLN00206 DEAD-box ATP-dependen 38.1 24 0.00052 41.8 2.9 26 68-95 150-175 (518)
355 KOG1514 Origin recognition com 38.0 46 0.001 41.3 5.2 52 277-334 572-632 (767)
356 CHL00181 cbbX CbbX; Provisiona 37.6 34 0.00073 37.7 3.8 15 81-95 62-76 (287)
357 TIGR00634 recN DNA repair prot 37.6 8.1E+02 0.018 29.6 16.1 19 749-767 347-365 (563)
358 TIGR03185 DNA_S_dndD DNA sulfu 37.4 8.7E+02 0.019 29.9 28.7 16 80-95 30-45 (650)
359 cd01126 TraG_VirD4 The TraG/Tr 37.4 17 0.00036 41.2 1.4 16 81-96 2-17 (384)
360 cd00464 SK Shikimate kinase (S 37.3 15 0.00032 35.2 0.9 16 80-95 1-16 (154)
361 cd01380 MYSc_type_V Myosin mot 37.2 32 0.0007 42.6 3.9 35 60-95 68-103 (691)
362 PF13555 AAA_29: P-loop contai 37.2 15 0.00033 31.9 0.8 15 81-95 26-40 (62)
363 PHA02653 RNA helicase NPH-II; 37.1 29 0.00063 42.9 3.4 32 57-94 164-195 (675)
364 COG2256 MGS1 ATPase related to 36.9 16 0.00034 42.5 1.1 43 47-94 22-64 (436)
365 PRK07261 topology modulation p 36.8 15 0.00033 36.9 0.9 15 81-95 3-17 (171)
366 PF12325 TMF_TATA_bd: TATA ele 36.8 2E+02 0.0042 28.3 8.4 37 730-766 57-93 (120)
367 cd01428 ADK Adenylate kinase ( 36.8 16 0.00034 36.5 0.9 15 81-95 2-16 (194)
368 PRK14723 flhF flagellar biosyn 36.7 35 0.00076 42.8 4.1 18 79-96 186-203 (767)
369 TIGR02397 dnaX_nterm DNA polym 36.7 29 0.00063 38.2 3.1 23 73-95 30-53 (355)
370 PRK06067 flagellar accessory p 36.6 25 0.00054 36.8 2.5 29 67-95 11-42 (234)
371 COG4096 HsdR Type I site-speci 36.5 35 0.00075 42.9 3.9 36 61-97 168-204 (875)
372 PF08580 KAR9: Yeast cortical 36.5 7.5E+02 0.016 31.1 15.2 203 539-802 111-364 (683)
373 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.4 1.6E+02 0.0034 28.8 7.8 66 534-599 20-86 (132)
374 TIGR02688 conserved hypothetic 36.4 51 0.0011 38.9 5.1 45 71-118 204-252 (449)
375 PRK00106 hypothetical protein; 36.4 2.4E+02 0.0051 34.3 10.6 73 726-803 124-201 (535)
376 TIGR02880 cbbX_cfxQ probable R 36.3 15 0.00032 40.3 0.7 16 80-95 60-75 (284)
377 PRK06995 flhF flagellar biosyn 36.2 15 0.00033 43.5 0.9 18 79-96 257-274 (484)
378 KOG2373 Predicted mitochondria 36.1 28 0.0006 40.1 2.8 28 68-96 261-291 (514)
379 COG1125 OpuBA ABC-type proline 36.1 15 0.00033 40.6 0.8 14 82-95 31-44 (309)
380 PRK08118 topology modulation p 36.0 16 0.00035 36.7 0.9 14 81-94 4-17 (167)
381 PF08298 AAA_PrkA: PrkA AAA do 35.9 61 0.0013 37.2 5.5 62 49-115 61-143 (358)
382 cd01127 TrwB Bacterial conjuga 35.9 15 0.00032 42.3 0.7 18 78-95 42-59 (410)
383 PRK01297 ATP-dependent RNA hel 35.8 22 0.00047 41.5 2.0 27 67-95 115-141 (475)
384 PF04111 APG6: Autophagy prote 35.8 3.4E+02 0.0073 30.6 11.2 17 345-361 52-68 (314)
385 PF02534 T4SS-DNA_transf: Type 35.7 26 0.00056 40.5 2.6 18 79-96 45-62 (469)
386 KOG1803 DNA helicase [Replicat 35.7 26 0.00057 42.5 2.7 18 79-96 202-219 (649)
387 PRK10917 ATP-dependent DNA hel 35.6 28 0.00061 42.8 3.0 39 54-96 262-300 (681)
388 cd07596 BAR_SNX The Bin/Amphip 35.5 2.7E+02 0.0058 28.2 9.7 98 707-822 105-210 (218)
389 PRK11889 flhF flagellar biosyn 35.4 35 0.00077 40.0 3.6 18 79-96 242-259 (436)
390 TIGR01843 type_I_hlyD type I s 35.4 2.2E+02 0.0048 32.0 9.9 61 711-771 163-226 (423)
391 PRK09361 radB DNA repair and r 35.3 28 0.00061 36.0 2.6 30 67-96 9-41 (225)
392 PF12774 AAA_6: Hydrolytic ATP 35.3 24 0.00052 37.8 2.1 40 80-119 34-84 (231)
393 PHA02624 large T antigen; Prov 35.1 32 0.00069 42.1 3.3 28 68-95 419-448 (647)
394 KOG0963 Transcription factor/C 35.0 1.8E+02 0.0039 35.7 9.2 102 704-808 219-321 (629)
395 PF08614 ATG16: Autophagy prot 35.0 1E+02 0.0022 32.0 6.6 27 738-764 155-181 (194)
396 TIGR02322 phosphon_PhnN phosph 34.9 17 0.00037 36.2 0.8 16 80-95 3-18 (179)
397 PRK15429 formate hydrogenlyase 34.9 23 0.00051 43.4 2.2 43 46-94 373-415 (686)
398 PF07106 TBPIP: Tat binding pr 34.5 1.3E+02 0.0028 30.4 7.1 49 537-585 79-129 (169)
399 KOG1853 LIS1-interacting prote 34.3 7E+02 0.015 27.8 13.7 158 541-765 24-181 (333)
400 TIGR01313 therm_gnt_kin carboh 34.2 15 0.00032 36.0 0.3 14 81-94 1-14 (163)
401 smart00787 Spc7 Spc7 kinetocho 34.2 1.5E+02 0.0032 33.5 8.1 81 710-790 169-260 (312)
402 TIGR02746 TraC-F-type type-IV 34.2 16 0.00035 45.2 0.7 19 78-96 430-448 (797)
403 PF02050 FliJ: Flagellar FliJ 34.2 3.1E+02 0.0067 24.7 9.0 94 733-829 4-97 (123)
404 PRK06305 DNA polymerase III su 34.2 26 0.00056 41.1 2.3 41 47-95 15-56 (451)
405 PRK10820 DNA-binding transcrip 34.0 24 0.00053 41.9 2.1 46 44-95 199-244 (520)
406 cd01124 KaiC KaiC is a circadi 33.9 19 0.00041 35.6 1.0 15 81-95 2-16 (187)
407 PRK06851 hypothetical protein; 33.8 28 0.00062 39.9 2.5 42 50-96 7-48 (367)
408 PRK14964 DNA polymerase III su 33.7 24 0.00052 42.0 2.0 41 47-95 11-52 (491)
409 KOG0354 DEAD-box like helicase 33.7 29 0.00063 43.1 2.7 25 67-94 68-92 (746)
410 PF10168 Nup88: Nuclear pore c 33.5 2.2E+02 0.0047 35.8 10.1 62 710-771 562-623 (717)
411 cd02020 CMPK Cytidine monophos 33.3 19 0.00042 33.9 1.0 15 81-95 2-16 (147)
412 PRK06696 uridine kinase; Valid 33.3 42 0.00091 35.1 3.5 35 60-95 5-39 (223)
413 KOG1547 Septin CDC10 and relat 33.2 47 0.001 36.6 3.8 28 67-94 34-62 (336)
414 PRK14970 DNA polymerase III su 33.2 35 0.00077 38.2 3.1 42 47-96 15-57 (367)
415 COG0630 VirB11 Type IV secreto 33.0 17 0.00037 40.5 0.6 19 78-96 143-161 (312)
416 COG5019 CDC3 Septin family pro 33.0 23 0.0005 40.6 1.6 24 75-98 20-46 (373)
417 TIGR01389 recQ ATP-dependent D 33.0 26 0.00056 42.1 2.1 26 68-95 20-45 (591)
418 TIGR03238 dnd_assoc_3 dnd syst 32.9 26 0.00055 41.8 2.0 27 70-96 18-50 (504)
419 cd01393 recA_like RecA is a b 32.9 32 0.00069 35.4 2.5 30 67-96 5-37 (226)
420 PRK12724 flagellar biosynthesi 32.6 41 0.0009 39.5 3.6 18 79-96 224-241 (432)
421 PRK14955 DNA polymerase III su 32.6 27 0.00059 40.0 2.2 41 47-95 14-55 (397)
422 COG0464 SpoVK ATPases of the A 32.6 23 0.00051 41.4 1.6 50 46-95 239-293 (494)
423 COG1126 GlnQ ABC-type polar am 32.4 19 0.0004 39.0 0.7 23 73-95 17-45 (240)
424 PRK08233 hypothetical protein; 32.3 20 0.00043 35.3 0.9 16 80-95 5-20 (182)
425 CHL00195 ycf46 Ycf46; Provisio 32.3 19 0.00042 42.7 0.9 17 79-95 260-276 (489)
426 COG3598 RepA RecA-family ATPas 32.2 22 0.00048 40.5 1.3 83 47-138 59-142 (402)
427 PRK11057 ATP-dependent DNA hel 32.2 28 0.00062 42.1 2.3 26 68-95 32-57 (607)
428 cd01379 MYSc_type_III Myosin m 32.2 42 0.00091 41.4 3.7 36 60-96 68-104 (653)
429 PF10473 CENP-F_leu_zip: Leuci 32.1 3.4E+02 0.0074 27.4 9.4 54 367-420 50-103 (140)
430 TIGR00602 rad24 checkpoint pro 31.9 29 0.00062 42.7 2.2 17 80-96 112-128 (637)
431 PF12718 Tropomyosin_1: Tropom 31.9 3.9E+02 0.0085 26.7 9.9 30 742-771 36-65 (143)
432 TIGR00231 small_GTP small GTP- 31.9 19 0.00042 32.9 0.6 16 80-95 3-18 (161)
433 KOG0249 LAR-interacting protei 31.9 2.6E+02 0.0057 35.1 9.9 118 709-828 126-257 (916)
434 PRK14721 flhF flagellar biosyn 31.9 21 0.00045 41.7 1.0 19 78-96 191-209 (420)
435 PF08477 Miro: Miro-like prote 31.8 19 0.0004 32.8 0.5 15 81-95 2-16 (119)
436 PF04156 IncA: IncA protein; 31.6 3.9E+02 0.0084 27.2 10.1 55 712-766 87-141 (191)
437 COG3829 RocR Transcriptional r 31.6 32 0.00069 41.4 2.5 44 43-92 239-282 (560)
438 TIGR01650 PD_CobS cobaltochela 31.5 23 0.00049 40.2 1.2 27 67-95 55-81 (327)
439 TIGR00643 recG ATP-dependent D 31.5 36 0.00078 41.5 3.0 38 54-95 236-273 (630)
440 PRK14531 adenylate kinase; Pro 31.4 22 0.00047 36.0 1.0 15 80-94 4-18 (183)
441 PRK06217 hypothetical protein; 31.3 21 0.00046 36.0 0.9 14 81-94 4-17 (183)
442 PRK14472 F0F1 ATP synthase sub 31.3 3.8E+02 0.0082 27.3 9.9 84 726-809 55-148 (175)
443 cd01386 MYSc_type_XVIII Myosin 31.3 43 0.00092 42.1 3.6 35 60-95 68-103 (767)
444 TIGR03744 traC_PFL_4706 conjug 31.2 19 0.00042 45.7 0.7 21 76-96 473-493 (893)
445 PRK15424 propionate catabolism 31.1 30 0.00064 41.7 2.2 44 45-94 215-258 (538)
446 PRK13767 ATP-dependent helicas 31.0 27 0.00058 44.3 1.9 23 71-95 42-64 (876)
447 PRK12726 flagellar biosynthesi 31.0 21 0.00046 41.4 0.9 18 79-96 207-224 (407)
448 cd01394 radB RadB. The archaea 30.9 35 0.00075 35.1 2.4 29 68-96 6-37 (218)
449 TIGR01360 aden_kin_iso1 adenyl 30.9 23 0.00049 35.1 1.0 16 80-95 5-20 (188)
450 PRK14474 F0F1 ATP synthase sub 30.8 3.3E+02 0.0072 29.6 9.9 84 726-809 42-135 (250)
451 TIGR00064 ftsY signal recognit 30.7 24 0.00053 38.5 1.3 18 79-96 73-90 (272)
452 cd01983 Fer4_NifH The Fer4_Nif 30.7 23 0.00049 30.3 0.8 16 81-96 2-17 (99)
453 PRK01172 ski2-like helicase; P 30.6 32 0.0007 42.0 2.4 22 71-94 32-53 (674)
454 cd02023 UMPK Uridine monophosp 30.6 20 0.00044 36.3 0.6 15 81-95 2-16 (198)
455 TIGR02329 propionate_PrpR prop 30.6 29 0.00062 41.6 1.9 45 45-95 208-252 (526)
456 PF00485 PRK: Phosphoribulokin 30.5 20 0.00043 36.5 0.6 15 81-95 2-16 (194)
457 cd07648 F-BAR_FCHO The F-BAR ( 30.5 6.5E+02 0.014 27.1 12.1 101 728-828 117-235 (261)
458 cd07651 F-BAR_PombeCdc15_like 30.4 6.8E+02 0.015 26.5 17.3 67 706-772 93-167 (236)
459 COG4942 Membrane-bound metallo 30.3 3.4E+02 0.0074 32.1 10.3 34 548-581 193-226 (420)
460 PRK11664 ATP-dependent RNA hel 30.2 39 0.00084 42.6 3.1 32 61-95 6-37 (812)
461 PRK13729 conjugal transfer pil 30.1 1E+02 0.0023 36.7 6.2 53 713-765 69-121 (475)
462 KOG0735 AAA+-type ATPase [Post 30.1 28 0.0006 43.3 1.6 44 76-119 699-759 (952)
463 PRK09111 DNA polymerase III su 29.9 30 0.00065 42.1 2.0 27 69-95 36-63 (598)
464 TIGR03263 guanyl_kin guanylate 29.9 24 0.00051 35.0 0.9 16 80-95 3-18 (180)
465 PRK14960 DNA polymerase III su 29.8 32 0.00069 42.6 2.1 41 47-95 13-54 (702)
466 PRK10867 signal recognition pa 29.8 63 0.0014 38.0 4.5 19 78-96 100-118 (433)
467 TIGR02173 cyt_kin_arch cytidyl 29.7 23 0.00049 34.5 0.8 16 80-95 2-17 (171)
468 PRK05759 F0F1 ATP synthase sub 29.7 4.4E+02 0.0096 25.9 9.9 84 726-809 41-134 (156)
469 PF00769 ERM: Ezrin/radixin/mo 29.7 2.6E+02 0.0056 30.4 8.8 51 717-767 9-59 (246)
470 PRK14532 adenylate kinase; Pro 29.6 24 0.00053 35.4 1.0 15 80-94 2-16 (188)
471 PF15619 Lebercilin: Ciliary p 29.6 4.8E+02 0.01 27.6 10.4 75 342-416 60-151 (194)
472 PRK00300 gmk guanylate kinase; 29.4 25 0.00053 35.7 1.0 18 78-95 5-22 (205)
473 PF15290 Syntaphilin: Golgi-lo 29.4 3.3E+02 0.0073 30.6 9.4 25 349-373 88-112 (305)
474 KOG0953 Mitochondrial RNA heli 29.4 40 0.00086 40.8 2.7 39 80-118 193-237 (700)
475 PF00931 NB-ARC: NB-ARC domain 29.3 54 0.0012 34.7 3.6 30 66-95 5-36 (287)
476 TIGR01074 rep ATP-dependent DN 29.2 26 0.00057 42.5 1.3 26 793-818 587-612 (664)
477 TIGR03877 thermo_KaiC_1 KaiC d 29.2 41 0.00089 35.5 2.7 26 68-93 8-36 (237)
478 KOG0976 Rho/Rac1-interacting s 29.1 1.2E+03 0.025 30.2 14.6 393 342-799 98-506 (1265)
479 TIGR00763 lon ATP-dependent pr 29.0 27 0.00059 43.6 1.5 16 80-95 349-364 (775)
480 cd00820 PEPCK_HprK Phosphoenol 29.0 26 0.00056 33.5 1.0 18 79-96 16-33 (107)
481 KOG0729 26S proteasome regulat 28.9 28 0.00061 38.8 1.4 44 75-118 206-268 (435)
482 PRK05342 clpX ATP-dependent pr 28.9 49 0.0011 38.5 3.4 18 78-95 108-125 (412)
483 TIGR02768 TraA_Ti Ti-type conj 28.6 34 0.00075 42.6 2.2 28 69-97 360-387 (744)
484 PF10412 TrwB_AAD_bind: Type I 28.5 21 0.00045 40.9 0.3 17 80-96 17-33 (386)
485 PRK13461 F0F1 ATP synthase sub 28.5 6E+02 0.013 25.3 10.7 31 779-809 104-135 (159)
486 TIGR03881 KaiC_arch_4 KaiC dom 28.4 42 0.0009 34.8 2.5 29 68-96 7-38 (229)
487 KOG0249 LAR-interacting protei 28.4 6E+02 0.013 32.1 12.1 65 534-598 52-124 (916)
488 PF10498 IFT57: Intra-flagella 28.4 5.8E+02 0.013 29.5 11.7 96 708-806 243-351 (359)
489 PHA01747 putative ATP-dependen 28.4 26 0.00057 40.5 1.1 30 66-95 178-207 (425)
490 PTZ00110 helicase; Provisional 28.4 33 0.00072 41.0 2.0 24 70-95 161-184 (545)
491 TIGR00929 VirB4_CagE type IV s 28.3 24 0.00052 43.5 0.8 19 78-96 434-452 (785)
492 PF04548 AIG1: AIG1 family; I 28.3 24 0.00052 36.7 0.7 16 80-95 2-17 (212)
493 PF12777 MT: Microtubule-bindi 28.2 2.4E+02 0.0052 31.9 8.6 102 712-817 220-331 (344)
494 PRK11034 clpA ATP-dependent Cl 28.2 52 0.0011 41.2 3.7 18 78-95 488-505 (758)
495 KOG0243 Kinesin-like protein [ 28.2 3.1E+02 0.0067 35.8 10.1 59 714-772 442-500 (1041)
496 PF14532 Sigma54_activ_2: Sigm 28.2 28 0.0006 33.5 1.0 21 75-95 18-38 (138)
497 PRK05563 DNA polymerase III su 28.0 40 0.00086 40.7 2.5 41 47-95 14-55 (559)
498 KOG0933 Structural maintenance 28.0 1.5E+03 0.033 29.9 19.6 71 722-799 817-887 (1174)
499 KOG0739 AAA+-type ATPase [Post 27.8 28 0.00061 39.3 1.1 74 47-120 131-225 (439)
500 PRK04040 adenylate kinase; Pro 27.7 27 0.00058 36.0 0.9 13 81-93 5-17 (188)
No 1
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-92 Score=815.11 Aligned_cols=395 Identities=39% Similarity=0.573 Sum_probs=358.0
Q ss_pred CCceEEEEEeCCCCCCccCC--CceEEEcCCeEEEeecCCCCCCCcceeecEeeCCC-------CChHHHHHHHHHHHHH
Q 003179 1 MEKICVAVRVRPPVSLETSG--GVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEET-------CSNARVYELLTKDIIH 71 (842)
Q Consensus 1 mE~IrV~VRVRP~~~~E~~~--~~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~-------asQeeVYe~v~~pLV~ 71 (842)
+.+|.|+|||||++.+|... .+++.+.++++++.++.++ .....|+||++||.. ++|..||+.++.++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~-k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS-KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc-ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 46899999999999999654 4567889999998777654 334459999999764 6899999999999999
Q ss_pred HHhcCCCeeEEeeccCCCCccccccCCC--CCCChHHhHHHHHHHHHHhc--cccceEEEEeeeeeeccccccccc-ccc
Q 003179 72 AAVEGFNGTVFAYGQTSSGKTFTMNGSA--DNPGVISLGVKDIFDAIQMM--SNREFLVRVSYMEIYNEEINDLLA-VEN 146 (842)
Q Consensus 72 svL~GyN~TIfAYGQTGSGKTyTM~Gs~--~~~GIIPRal~dLF~~I~~~--~~~ef~V~VSylEIYNE~V~DLL~-~~~ 146 (842)
.+++|||+||||||||||||||||+|.. +++|||||+|++||..|... .+..|.|.|||+|||||.|+|||+ |.+
T Consensus 82 ~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~ 161 (1221)
T KOG0245|consen 82 HAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKS 161 (1221)
T ss_pred HHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCC
Confidence 9999999999999999999999999987 89999999999999999864 356899999999999999999999 543
Q ss_pred -ccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEE
Q 003179 147 -QKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRV 225 (842)
Q Consensus 147 -~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~ 225 (842)
+.|++||+|..|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||+|++.+...+.+. +....++
T Consensus 162 kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~-~l~sek~ 240 (1221)
T KOG0245|consen 162 KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDT-GLDSEKV 240 (1221)
T ss_pred CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccC-CCcceee
Confidence 68999999999999999999999999999999999999999999999999999999999999998887653 3457789
Q ss_pred EeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCC----CCCCcccCCCCccccccccccCCCccee
Q 003179 226 SVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGV----KQRGHIPYRDSKLTRILQPALGGNAKTS 301 (842)
Q Consensus 226 SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~----kk~~hIPYRDSKLTrLLqDSLGGNskT~ 301 (842)
|+|+|||||||||++.+|+.|+|+|||.+|||||.+||+||.||++.. ++..+||||||.|||||+++||||+||+
T Consensus 241 SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTa 320 (1221)
T KOG0245|consen 241 SKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTA 320 (1221)
T ss_pred eeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhh
Confidence 999999999999999999999999999999999999999999999754 3455999999999999999999999999
Q ss_pred eeecCCCCcCchHhHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcccch-----------hhHHH
Q 003179 302 IICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKLQGSHAG-----------VLEQE 370 (842)
Q Consensus 302 mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr~~L~~~~~~-----------~~e~e 370 (842)
|||+|||++.||+|||+|||||+|||.|+|.|+|||++. +.+|++|+.|+.+||..+.+.... ....+
T Consensus 321 MIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpn-aKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~ 399 (1221)
T KOG0245|consen 321 MIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPN-AKLIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPE 399 (1221)
T ss_pred hhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCcc-HHHHHHHHHHHHHHHHHHhccccccccccCCccccccccc
Confidence 999999999999999999999999999999999999865 578999999999999999875422 23678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 371 ILKLRNDMLKYELEREKLQLELEEERRS 398 (842)
Q Consensus 371 i~kLr~~~~~~e~e~e~l~~elee~~~~ 398 (842)
+.++++++.+.|.+..++.+.++|..+.
T Consensus 400 ~e~~~~~L~E~Ek~mael~etW~EKl~~ 427 (1221)
T KOG0245|consen 400 IEELRERLQETEKIMAELNETWEEKLRE 427 (1221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877653
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-88 Score=797.67 Aligned_cols=355 Identities=42% Similarity=0.678 Sum_probs=321.1
Q ss_pred ceEEEEEeCCCCCCccCCCc--eEEEcC-Ce-EEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC
Q 003179 3 KICVAVRVRPPVSLETSGGV--FWKVED-NR-VSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFN 78 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~~~~~--~~~v~~-~~-v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN 78 (842)
||+|+|||||++.+|....+ ++.+++ .+ |.+..........++|+||+||+|.+.|.+||+.++.|+|..|+.|||
T Consensus 50 NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyN 129 (1041)
T KOG0243|consen 50 NIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYN 129 (1041)
T ss_pred ceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCC
Confidence 79999999999999965443 455555 22 555433212224688999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCccccccC--------CCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccccccccc---c
Q 003179 79 GTVFAYGQTSSGKTFTMNG--------SADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN---Q 147 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~G--------s~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~---~ 147 (842)
||||||||||+||||||.| .+.++|||||++.+||+.++... .+|.|+|||+|+|||.|+|||++.. .
T Consensus 130 CTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~~~~~~ 208 (1041)
T KOG0243|consen 130 CTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASEDTSDK 208 (1041)
T ss_pred ceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCcccccc
Confidence 9999999999999999999 46788999999999999998865 8999999999999999999999764 3
Q ss_pred cceeeecC-----CCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCc
Q 003179 148 KLQIHESL-----EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDA 222 (842)
Q Consensus 148 ~L~IrEd~-----~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~ 222 (842)
.+.+.+++ .+|++|.||.++.|+++.|++.+|..|...|.+++|.||..|||||+||+|+|..+.... .+.+.
T Consensus 209 ~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~--~geel 286 (1041)
T KOG0243|consen 209 KLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP--EGEEL 286 (1041)
T ss_pred ccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC--cchhh
Confidence 45555554 689999999999999999999999999999999999999999999999999998776554 34667
Q ss_pred eEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceee
Q 003179 223 IRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSI 302 (842)
Q Consensus 223 v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~m 302 (842)
++.|+|+||||||||.++.+|+.+.|.+|++.||+||++||+||+||.++ .+|||||+|||||||||||||.+||+|
T Consensus 287 vK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~---s~HIPYRESKLTRLLQDSLGGkTKT~i 363 (1041)
T KOG0243|consen 287 VKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH---SGHIPYRESKLTRLLQDSLGGKTKTCI 363 (1041)
T ss_pred HhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc---CCCCCchHHHHHHHHHHHhCCCceeEE
Confidence 88999999999999999999999999999999999999999999999985 469999999999999999999999999
Q ss_pred eecCCCCcCchHhHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhccc
Q 003179 303 ICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKLQGSH 363 (842)
Q Consensus 303 IatISPs~~~~eETLsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr~~L~~~~ 363 (842)
||||||+..+++||++||.||.|||+|+|+|.+|.....+.+++.|-.||++||.+|...+
T Consensus 364 IATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 364 IATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAR 424 (1041)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999999999999999998755
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-90 Score=787.26 Aligned_cols=356 Identities=48% Similarity=0.681 Sum_probs=322.7
Q ss_pred CceEEEEEeCCCCCCccCCCc--e--EEEcCCeEEEeecCC-CCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 2 EKICVAVRVRPPVSLETSGGV--F--WKVEDNRVSLHRQHD-TPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~~--~--~~v~~~~v~l~~~~~-~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
++|+|+|||||+...+...+. . +......+.+.++.. .....++|+||+||+++++|++||+.++.|+|++|++|
T Consensus 5 ~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~G 84 (574)
T KOG4280|consen 5 CKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEG 84 (574)
T ss_pred cceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcc
Confidence 579999999999997754432 2 333344566655543 23456789999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCccccccCC-CCCCChHHhHHHHHHHHHHhcccc-ceEEEEeeeeeecccccccccccc-ccceeee
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGS-ADNPGVISLGVKDIFDAIQMMSNR-EFLVRVSYMEIYNEEINDLLAVEN-QKLQIHE 153 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs-~~~~GIIPRal~dLF~~I~~~~~~-ef~V~VSylEIYNE~V~DLL~~~~-~~L~IrE 153 (842)
|||||||||||||||||||.|+ ++..|||||++.+||..|+...+. .|.|+|||+|||||.|+|||++.+ ..+.+++
T Consensus 85 yNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre 164 (574)
T KOG4280|consen 85 YNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELRE 164 (574)
T ss_pred cCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceeeE
Confidence 9999999999999999999999 566799999999999999987644 699999999999999999999988 5899999
Q ss_pred cCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeec
Q 003179 154 SLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDL 233 (842)
Q Consensus 154 d~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDL 233 (842)
++..|+||.||+++.|.++++++.+|..|..+|.+++|.||..|||||+||+|+|++..... .+....+.|+|+||||
T Consensus 165 ~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~--~~~~~~~~~rlnlvDL 242 (574)
T KOG4280|consen 165 DPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSD--GGLMSGRSSKLNLVDL 242 (574)
T ss_pred cCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccC--CCccccccceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999933322 2355678899999999
Q ss_pred cCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCch
Q 003179 234 AGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHI 313 (842)
Q Consensus 234 AGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~ 313 (842)
|||||..++|+.|.|++|+.+||+||++||+||.+|+++.+ +||||||||||+||||||||||+|+|||||+|+..++
T Consensus 243 agsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~--~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~ 320 (574)
T KOG4280|consen 243 AGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK--THIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNY 320 (574)
T ss_pred cchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc--CCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhh
Confidence 99999999999999999999999999999999999999754 4999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcc
Q 003179 314 EETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKLQGS 362 (842)
Q Consensus 314 eETLsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr~~L~~~ 362 (842)
+||++||+||+|||.|+|+|.+|+++.+ +.++.++.+|+.||.++...
T Consensus 321 ~ETlsTLrfA~Rak~I~nk~~ined~~~-~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 321 EETLSTLRFAQRAKAIKNKPVINEDPKD-ALLRELQEEIERLKKELDPG 368 (574)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcch-hhHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999774 67899999999999999764
No 4
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-87 Score=780.53 Aligned_cols=358 Identities=54% Similarity=0.822 Sum_probs=330.3
Q ss_pred CceEEEEEeCCCCCCccC--CCceEEEcCCeEEEeecCCC---CCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 2 EKICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHDT---PVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~--~~~~~~v~~~~v~l~~~~~~---~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
++|.|+|||||+++.+.. ..+.|.+.++...+...... ......|.||+||+++++|++||+..++|+|.+|+.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 489999999999988532 34567777776655432211 1124789999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeeccccccccccccccceeeecCC
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLE 156 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~~~L~IrEd~~ 156 (842)
||+||||||||||||||||.|..++|||||+++.+||+.|....++.|.|.|||+|||||.|+|||++++..+.+++|+.
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~ 165 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSE 165 (675)
T ss_pred cccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccCC
Q 003179 157 HGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGS 236 (842)
Q Consensus 157 ~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAGS 236 (842)
+|++|.||+++.|.|+++++.+|..|..+|+++.|.+|..|||||+||+|.|.+...... . +.|+|+|||||||
T Consensus 166 ~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-----~-~~s~L~lIDLAGS 239 (675)
T KOG0242|consen 166 GGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-----S-RVSKLNLIDLAGS 239 (675)
T ss_pred CCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-----c-hhheehhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999887653 1 6799999999999
Q ss_pred ccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhH
Q 003179 237 ERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEET 316 (842)
Q Consensus 237 ER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eET 316 (842)
||+.+|++.|.|++||++||+||++||+||++|+++.. ..||||||||||||||++|||||+|+|||||+|+..+++||
T Consensus 240 ERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~-~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT 318 (675)
T KOG0242|consen 240 ERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKR-PRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEET 318 (675)
T ss_pred hhhhhhhccceeccccchhhHHHHHHHHHHHHHccccc-cCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHH
Confidence 99999999999999999999999999999999999853 34999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcccchh
Q 003179 317 KGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKLQGSHAGV 366 (842)
Q Consensus 317 LsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr~~L~~~~~~~ 366 (842)
.+||+||+||+.|++++.+|.+..+..++..++.++..|+.++...+...
T Consensus 319 ~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 319 KNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKL 368 (675)
T ss_pred HHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999988999999999998755443
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.4e-83 Score=759.58 Aligned_cols=350 Identities=39% Similarity=0.638 Sum_probs=313.4
Q ss_pred CceEEEEEeCCCCCCccCCCceEEEcCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeE
Q 003179 2 EKICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTV 81 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TI 81 (842)
.+|+|+|||||+...|.+...++.+.++.+.+ .+..|.||+||+++++|++||+.++.|+|+++++|||+||
T Consensus 98 s~VkV~VRVRPl~~~E~g~~iV~~~s~dsl~I--------~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTI 169 (1320)
T PLN03188 98 SGVKVIVRMKPLNKGEEGEMIVQKMSNDSLTI--------NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSV 169 (1320)
T ss_pred CCeEEEEEcCCCCCccCCCeeEEEcCCCeEEE--------eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCccee
Confidence 48999999999998876544556666776665 2468999999999999999999999999999999999999
Q ss_pred EeeccCCCCccccccCCC----------CCCChHHhHHHHHHHHHHhc------cccceEEEEeeeeeeccccccccccc
Q 003179 82 FAYGQTSSGKTFTMNGSA----------DNPGVISLGVKDIFDAIQMM------SNREFLVRVSYMEIYNEEINDLLAVE 145 (842)
Q Consensus 82 fAYGQTGSGKTyTM~Gs~----------~~~GIIPRal~dLF~~I~~~------~~~ef~V~VSylEIYNE~V~DLL~~~ 145 (842)
||||||||||||||+|+. .++|||||++++||..|... ....|.|+|||+|||||+|+|||++.
T Consensus 170 FAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~ 249 (1320)
T PLN03188 170 FAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPS 249 (1320)
T ss_pred ecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccc
Confidence 999999999999999963 46899999999999998642 24579999999999999999999998
Q ss_pred cccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEE
Q 003179 146 NQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRV 225 (842)
Q Consensus 146 ~~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~ 225 (842)
...+.|++++.+|++|.||+++.|.|+++++++|..|..+|++++|.+|..|||||+||+|+|++...... .+....+.
T Consensus 250 ~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~-dg~ss~r~ 328 (1320)
T PLN03188 250 QKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVA-DGLSSFKT 328 (1320)
T ss_pred cCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccC-CCCcceEE
Confidence 88999999999999999999999999999999999999999999999999999999999999987654322 22345678
Q ss_pred EeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCC--CCCCcccCCCCccccccccccCCCcceeee
Q 003179 226 SVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGV--KQRGHIPYRDSKLTRILQPALGGNAKTSII 303 (842)
Q Consensus 226 SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~--kk~~hIPYRDSKLTrLLqDSLGGNskT~mI 303 (842)
|+|+|||||||||...+++.|.+++|+++||+||++||+||.+|++.. ++..||||||||||+||||+|||||+|+||
T Consensus 329 SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMI 408 (1320)
T PLN03188 329 SRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMV 408 (1320)
T ss_pred EEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999999999999999999999999998642 345699999999999999999999999999
Q ss_pred ecCCCCcCchHhHHHHHHHHHHhhcccccceeccccCHH-----HHHHHHHHHHHHHHHHHh
Q 003179 304 CTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDA-----ALLKRQKLEIEELRRKLQ 360 (842)
Q Consensus 304 atISPs~~~~eETLsTLrFAsRAk~IkN~~~vNe~~~~~-----~li~~lk~EI~~Lr~~L~ 360 (842)
|||||+..+++||++||+||+||+.|+|.|++|+...+. .+|++|+.|+.+|+....
T Consensus 409 a~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~ 470 (1320)
T PLN03188 409 CAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGN 470 (1320)
T ss_pred EecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999876532 366777778888877753
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=8.9e-83 Score=708.54 Aligned_cols=340 Identities=46% Similarity=0.676 Sum_probs=309.5
Q ss_pred CCceEEEEEeCCCCCCccCCCce--EEE--cCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 1 MEKICVAVRVRPPVSLETSGGVF--WKV--EDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 1 mE~IrV~VRVRP~~~~E~~~~~~--~~v--~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
|.+|+|+||+||.+..|...+.. ..+ ..+++.+.... .. ++|.||+||+|+++|++||..++.|+|++|+.|
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~---~~-~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTK---ET-KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEeccc---cc-ccceeeeecCCCccHHHHHHHHHHHHHHHHhcc
Confidence 67899999999999988543321 112 24566554322 22 789999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCccccccCCCC---CCChHHhHHHHHHHHHHhcc-ccceEEEEeeeeeeccccccccccccccceee
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSAD---NPGVISLGVKDIFDAIQMMS-NREFLVRVSYMEIYNEEINDLLAVENQKLQIH 152 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~---~~GIIPRal~dLF~~I~~~~-~~ef~V~VSylEIYNE~V~DLL~~~~~~L~Ir 152 (842)
||+||||||||||||||||.|... ..|||||++++||+.|.... +.+|.|+|||+|||+|+|+|||+|.+.++.++
T Consensus 82 YNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvh 161 (607)
T KOG0240|consen 82 YNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVH 161 (607)
T ss_pred cceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceee
Confidence 999999999999999999999766 45999999999999998764 45899999999999999999999999999999
Q ss_pred ecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEee
Q 003179 153 ESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVD 232 (842)
Q Consensus 153 Ed~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVD 232 (842)
+|...++||+|+++..|.++++++++++.|..+|+++.|+||.+|||||.||+|+|.+.+... ...+.|+|.|||
T Consensus 162 eDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~-----~~~~~gkLyLVD 236 (607)
T KOG0240|consen 162 EDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED-----KRKLSGKLYLVD 236 (607)
T ss_pred cccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc-----hhhccccEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999887653 457789999999
Q ss_pred ccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCc
Q 003179 233 LAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDH 312 (842)
Q Consensus 233 LAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~ 312 (842)
|||||+++++|+.|.-+.|+++||+||.|||+||++|+++. ..|||||||||||||||+|||||+|.+|+|++|+..+
T Consensus 237 LaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~--~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n 314 (607)
T KOG0240|consen 237 LAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGP--KSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLN 314 (607)
T ss_pred cccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCC--CCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccc
Confidence 99999999999999999999999999999999999999975 4799999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHH
Q 003179 313 IEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLE 351 (842)
Q Consensus 313 ~eETLsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~E 351 (842)
..||.+||+|++||+.|+|.+.+|...+..+..++|+.+
T Consensus 315 ~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~ 353 (607)
T KOG0240|consen 315 EAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKK 353 (607)
T ss_pred ccccccchhhccccccccchhhhhhHhhHHHHHHHHHHH
Confidence 999999999999999999999999988877766666554
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-82 Score=723.57 Aligned_cols=414 Identities=39% Similarity=0.593 Sum_probs=360.0
Q ss_pred CceEEEEEeCCCCCCccCC--CceEEEcCCeEEEeecC-----CCCCCCcceeecEeeCCC-------CChHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETSG--GVFWKVEDNRVSLHRQH-----DTPVSGTSYAFDHVFEET-------CSNARVYELLTK 67 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~--~~~~~v~~~~v~l~~~~-----~~~~~~~sF~FD~VF~~~-------asQeeVYe~v~~ 67 (842)
.+|+|+|||||++.+|.+. .+++.++.+..+++.++ +...+.++|.||++|++. +.|+.||+.++.
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~ 83 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGE 83 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcch
Confidence 4799999999999999653 46788999998887653 223457899999999875 679999999999
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhc--cccceEEEEeeeeeeccccccccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMM--SNREFLVRVSYMEIYNEEINDLLAVE 145 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~--~~~ef~V~VSylEIYNE~V~DLL~~~ 145 (842)
.+|+++|+|||+||||||||||||||||+|..+.||||||.+..||..|+.. ++..|.|.|||+|||||+++|||+|.
T Consensus 84 ~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk 163 (1714)
T KOG0241|consen 84 GILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPK 163 (1714)
T ss_pred HHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCC
Confidence 9999999999999999999999999999999999999999999999999864 45689999999999999999999986
Q ss_pred c--ccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCce
Q 003179 146 N--QKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAI 223 (842)
Q Consensus 146 ~--~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v 223 (842)
. +.+.++++.-.|+||.||++..|+|++|+-.+|..|+++|++++|+||..|||||++|.+.|.+.-.+... +....
T Consensus 164 ~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~kt-g~Sge 242 (1714)
T KOG0241|consen 164 GSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKT-GHSGE 242 (1714)
T ss_pred CCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecccc-Ccchh
Confidence 5 67999999999999999999999999999999999999999999999999999999999999988776543 23345
Q ss_pred EEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCC---CCCCcccCCCCccccccccccCCCcce
Q 003179 224 RVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGV---KQRGHIPYRDSKLTRILQPALGGNAKT 300 (842)
Q Consensus 224 ~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~---kk~~hIPYRDSKLTrLLqDSLGGNskT 300 (842)
++|+|.|||||||||+.++|+.|.|++||.+||+||.+||.||.+|++.. .+..+||||||.||+||||+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 68999999999999999999999999999999999999999999998753 345699999999999999999999999
Q ss_pred eeeecCCCCcCchHhHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 003179 301 SIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLK 380 (842)
Q Consensus 301 ~mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~ 380 (842)
+||+||||++.+|+||++||+||.|||+|+|++.||++. ++..+++++.|++.|+.+|.+... .+...+++.+.+
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedp-narvirElReEve~lr~qL~~ae~----~~~~el~e~l~e 397 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDP-NARVIRELREEVEKLREQLEQAEA----MKLPELKEKLEE 397 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCc-hHHHHHHHHHHHHHHHHHHhhhhh----ccchHHHHHHHH
Confidence 999999999999999999999999999999999999985 467899999999999999987322 123345555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 003179 381 YELEREKLQLELEEERRSRKERDQCVREQQMRLQNHNSLVTSSG 424 (842)
Q Consensus 381 ~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~v~~s~ 424 (842)
.+.-++++...+++..++ .+....++|+.|+.+...+.+++
T Consensus 398 sekli~ei~~twEEkl~k---tE~in~erq~~L~~~gis~~~sg 438 (1714)
T KOG0241|consen 398 SEKLIKEITVTWEEKLRK---TEEINQERQAQLESMGISLENSG 438 (1714)
T ss_pred HHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccc
Confidence 555556666666665554 55556677777777665555554
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=4.1e-82 Score=688.92 Aligned_cols=325 Identities=46% Similarity=0.726 Sum_probs=298.3
Q ss_pred ceEEEEEeCCCCCCccC--CCceEEEcCCeEEEeecCCC----------CCCCcceeecEeeCCCCChHHHHHHHHHHHH
Q 003179 3 KICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHDT----------PVSGTSYAFDHVFEETCSNARVYELLTKDII 70 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~~--~~~~~~v~~~~v~l~~~~~~----------~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV 70 (842)
+|+|+|||||+.+.|.. ...+|.+.++.+.+..+... ....+.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 69999999999988743 34567777766655544321 2346789999999999999999999999999
Q ss_pred HHHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc-ccceEEEEeeeeeeccccccccccccccc
Q 003179 71 HAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS-NREFLVRVSYMEIYNEEINDLLAVENQKL 149 (842)
Q Consensus 71 ~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~-~~ef~V~VSylEIYNE~V~DLL~~~~~~L 149 (842)
+++++|||+||||||||||||||||+|+..++|||||++++||+.++... +..|.|+|||+|||||+|+|||++...++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999999999998765 67899999999999999999999988899
Q ss_pred eeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEE
Q 003179 150 QIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLN 229 (842)
Q Consensus 150 ~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~ 229 (842)
.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+.....+ .......|+|+
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~--~~~~~~~s~l~ 238 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTAS--INQQVRIGKLS 238 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCC--CCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998876532 24457889999
Q ss_pred EeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCC
Q 003179 230 LVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPE 309 (842)
Q Consensus 230 LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs 309 (842)
|||||||||..++++.|.+++|+++||+||.+|++||.+|+.+.+...||||||||||+||+|+|||||+|+||+||||+
T Consensus 239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999876545799999999999999999999999999999999
Q ss_pred cCchHhHHHHHHHHHHhhcc
Q 003179 310 EDHIEETKGTLQFASRAKRI 329 (842)
Q Consensus 310 ~~~~eETLsTLrFAsRAk~I 329 (842)
..+++||++||+||+|||+|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999987
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.5e-81 Score=681.42 Aligned_cols=320 Identities=45% Similarity=0.694 Sum_probs=287.6
Q ss_pred CceEEEEEeCCCCCCccCCC--ceEEEc-CCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC
Q 003179 2 EKICVAVRVRPPVSLETSGG--VFWKVE-DNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFN 78 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~--~~~~v~-~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN 78 (842)
++|+|+|||||+...|...+ .++.+. ++.+.+... ..+.|.||+||+++++|++||+.++.|+|+++++|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n 75 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH-----PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYN 75 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC-----CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 48999999999999886433 233333 344444321 2578999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCccccccCCCC--------CCChHHhHHHHHHHHHHhc-----cccceEEEEeeeeeeccccccccccc
Q 003179 79 GTVFAYGQTSSGKTFTMNGSAD--------NPGVISLGVKDIFDAIQMM-----SNREFLVRVSYMEIYNEEINDLLAVE 145 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~Gs~~--------~~GIIPRal~dLF~~I~~~-----~~~ef~V~VSylEIYNE~V~DLL~~~ 145 (842)
+||||||||||||||||+|+.. ++|||||++++||..++.. .+..|.|+|||+|||||+|+|||++.
T Consensus 76 ~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~ 155 (337)
T cd01373 76 GSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT 155 (337)
T ss_pred eeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC
Confidence 9999999999999999999753 6799999999999998754 34579999999999999999999998
Q ss_pred cccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEE
Q 003179 146 NQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRV 225 (842)
Q Consensus 146 ~~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~ 225 (842)
...+.+++++.+|++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|.|.+...... ....+.
T Consensus 156 ~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~---~~~~~~ 232 (337)
T cd01373 156 SRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS---STNIRT 232 (337)
T ss_pred CCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC---CCcEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999987765432 235678
Q ss_pred EeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCC-CCCCcccCCCCccccccccccCCCcceeeee
Q 003179 226 SVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGV-KQRGHIPYRDSKLTRILQPALGGNAKTSIIC 304 (842)
Q Consensus 226 SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~-kk~~hIPYRDSKLTrLLqDSLGGNskT~mIa 304 (842)
|+|+|||||||||...+++.|.+++|+.+||+||++|++||.+|++.. .+..||||||||||+||+|+|||||+|+|||
T Consensus 233 s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~ 312 (337)
T cd01373 233 SRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIA 312 (337)
T ss_pred EEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEE
Confidence 999999999999999999999999999999999999999999998633 2367999999999999999999999999999
Q ss_pred cCCCCcCchHhHHHHHHHHHHhhcc
Q 003179 305 TIAPEEDHIEETKGTLQFASRAKRI 329 (842)
Q Consensus 305 tISPs~~~~eETLsTLrFAsRAk~I 329 (842)
||||+..+++||++||+||+|||+|
T Consensus 313 ~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 313 NVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999987
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.1e-79 Score=671.75 Aligned_cols=321 Identities=36% Similarity=0.548 Sum_probs=289.4
Q ss_pred CceEEEEEeCCCCCCccC--CCceEEE-cCCeEEEeecCC---------CCCCCcceeecEeeCCCCChHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETS--GGVFWKV-EDNRVSLHRQHD---------TPVSGTSYAFDHVFEETCSNARVYELLTKDI 69 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~--~~~~~~v-~~~~v~l~~~~~---------~~~~~~sF~FD~VF~~~asQeeVYe~v~~pL 69 (842)
++|+|+|||||+...|.. ...++.+ +++++.++.+.. .....+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 479999999999998743 2344544 555666665433 1235678999999999999999999999999
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccccccccc---
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN--- 146 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~--- 146 (842)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.. |.|+|||+|||||+|+|||++..
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 9999999999999999999999999999999999999999999999876 99999999999999999998755
Q ss_pred ---ccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCC---CC
Q 003179 147 ---QKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSS---ST 220 (842)
Q Consensus 147 ---~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~---~~ 220 (842)
.++.+++++.++++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|.|.+......+. ..
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 369999999999999999999999999999999999999999999999999999999999998876543211 23
Q ss_pred CceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCC---CCCcccCCCCccccccccccCCC
Q 003179 221 DAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVK---QRGHIPYRDSKLTRILQPALGGN 297 (842)
Q Consensus 221 ~~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~k---k~~hIPYRDSKLTrLLqDSLGGN 297 (842)
.....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++... +..||||||||||+||+|+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 567889999999999999999999999999999999999999999999987532 46799999999999999999999
Q ss_pred cceeeeecCCCCcCchHhHHHHHHHHHHhh
Q 003179 298 AKTSIICTIAPEEDHIEETKGTLQFASRAK 327 (842)
Q Consensus 298 skT~mIatISPs~~~~eETLsTLrFAsRAk 327 (842)
|+|+||+||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.2e-79 Score=671.20 Aligned_cols=334 Identities=42% Similarity=0.637 Sum_probs=306.4
Q ss_pred CceEEEEEeCCCCCCccCC--CceEEEcCCeEEEeecCC---CCCCCcceeecEeeCCC-------CChHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETSG--GVFWKVEDNRVSLHRQHD---TPVSGTSYAFDHVFEET-------CSNARVYELLTKDI 69 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~--~~~~~v~~~~v~l~~~~~---~~~~~~sF~FD~VF~~~-------asQeeVYe~v~~pL 69 (842)
++|+|+|||||++..|... ..++.+.++.+.+..+.. .......|.||+||++. ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999887543 356888888888876542 12456789999999998 99999999999999
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccc--cceEEEEeeeeeecccccccccccc-
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSN--REFLVRVSYMEIYNEEINDLLAVEN- 146 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~--~ef~V~VSylEIYNE~V~DLL~~~~- 146 (842)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.++...+ ..|.|+|||+|||||+|+|||++..
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 9999999999999999999999999999999999999999999999987544 6899999999999999999999874
Q ss_pred --ccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceE
Q 003179 147 --QKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIR 224 (842)
Q Consensus 147 --~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~ 224 (842)
..+.+++++..|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+...... .......
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~-~~~~~~~ 239 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE-TDLTTEK 239 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC-CCCCceE
Confidence 6899999999999999999999999999999999999999999999999999999999999998765532 1244667
Q ss_pred EEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCC-----CCCCcccCCCCccccccccccCCCcc
Q 003179 225 VSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGV-----KQRGHIPYRDSKLTRILQPALGGNAK 299 (842)
Q Consensus 225 ~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~-----kk~~hIPYRDSKLTrLLqDSLGGNsk 299 (842)
.|+|+|||||||||...++..|.+++|+.+||+||++|++||.+|+.+. ++..||||||||||+||+|+|||||+
T Consensus 240 ~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~ 319 (356)
T cd01365 240 VSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSK 319 (356)
T ss_pred EEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCce
Confidence 8999999999999999999999999999999999999999999998764 34689999999999999999999999
Q ss_pred eeeeecCCCCcCchHhHHHHHHHHHHhhcccccceec
Q 003179 300 TSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVN 336 (842)
Q Consensus 300 T~mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~vN 336 (842)
|+||+||+|...+++||++||+||+||++|+|.|++|
T Consensus 320 t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 320 TAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999999999999987
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.1e-77 Score=651.77 Aligned_cols=330 Identities=43% Similarity=0.670 Sum_probs=297.0
Q ss_pred CceEEEEEeCCCCCCccCC--CceEEEcCC--eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCC
Q 003179 2 EKICVAVRVRPPVSLETSG--GVFWKVEDN--RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGF 77 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~--~~~~~v~~~--~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~Gy 77 (842)
.+|+|+|||||+...|... ...+.+.+. .|.+..........+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4899999999999888543 345566543 344433322234567899999999999999999999999999999999
Q ss_pred CeeEEeeccCCCCccccccCCC-----------CCCChHHhHHHHHHHHHHhccccceEEEEeeeeeeccccccccccc-
Q 003179 78 NGTVFAYGQTSSGKTFTMNGSA-----------DNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVE- 145 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~Gs~-----------~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~- 145 (842)
|+||||||||||||||||+|+. +++|||||++++||+.++.. +..|.|+|||+|||||+|+|||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 9999999999999999999974 34899999999999999876 6789999999999999999999987
Q ss_pred --cccceeeec--CCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCC
Q 003179 146 --NQKLQIHES--LEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTD 221 (842)
Q Consensus 146 --~~~L~IrEd--~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~ 221 (842)
..++.++++ ..+|++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|.|.+...... ...
T Consensus 161 ~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~--~~~ 238 (352)
T cd01364 161 DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTIS--GEE 238 (352)
T ss_pred ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCC--CCc
Confidence 568999999 58999999999999999999999999999999999999999999999999999998765432 234
Q ss_pred ceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCccee
Q 003179 222 AIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTS 301 (842)
Q Consensus 222 ~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~ 301 (842)
....|+|+|||||||||..+.++.|.+++|++.||+||.+|++||.+|+.+. .|||||+|+||+||+|+|||||+|+
T Consensus 239 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~---~~vpyR~S~LT~lL~~~Lgg~s~t~ 315 (352)
T cd01364 239 LVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS---PHIPYRESKLTRLLQDSLGGRTKTS 315 (352)
T ss_pred cEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC---CCCCCcccHHHHHHHHhcCCCceEE
Confidence 5678999999999999999999999999999999999999999999998753 6999999999999999999999999
Q ss_pred eeecCCCCcCchHhHHHHHHHHHHhhcccccceecc
Q 003179 302 IICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNE 337 (842)
Q Consensus 302 mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~vNe 337 (842)
||+||||+..+++||++||+||+||++|+|.|.+|.
T Consensus 316 ~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 316 IIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999999995
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4.3e-77 Score=647.86 Aligned_cols=324 Identities=47% Similarity=0.722 Sum_probs=295.4
Q ss_pred CceEEEEEeCCCCCCccCC--CceEEEc--CCeEEEeecCC-CCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 2 EKICVAVRVRPPVSLETSG--GVFWKVE--DNRVSLHRQHD-TPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~--~~~~~v~--~~~v~l~~~~~-~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
|+|+|+|||||+...|... ..++.++ ...+.++.+.. .....++|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 6899999999999887543 3355654 44555554432 23456889999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCccccccCCCC---CCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccccccccc-ccceee
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSAD---NPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN-QKLQIH 152 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~---~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~-~~L~Ir 152 (842)
||+||||||||||||||||+|+.. ++|||||++++||+.++...+..|.|+|||+|||||+|+|||++.. ..+.++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999999887 8999999999999999988888999999999999999999999876 679999
Q ss_pred ecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEee
Q 003179 153 ESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVD 232 (842)
Q Consensus 153 Ed~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVD 232 (842)
+++.+|++|.|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|++.+.... ....+..|+|+|||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~--~~~~~~~s~L~~VD 238 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGED--GENHIRVGKLNLVD 238 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCC--CCCcEEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998776432 23467789999999
Q ss_pred ccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCc
Q 003179 233 LAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDH 312 (842)
Q Consensus 233 LAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~ 312 (842)
||||||..++++.|.+++|+..||+||.+|++||.+|+++. ..||||||||||+||+|+|||||+|+||+||+|...+
T Consensus 239 LAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~--~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~ 316 (333)
T cd01371 239 LAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK--STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYN 316 (333)
T ss_pred CCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC--CCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCcccc
Confidence 99999999999999999999999999999999999999753 3699999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcc
Q 003179 313 IEETKGTLQFASRAKRI 329 (842)
Q Consensus 313 ~eETLsTLrFAsRAk~I 329 (842)
++||++||+||+|||.|
T Consensus 317 ~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 317 YDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999987
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=4.3e-77 Score=645.48 Aligned_cols=313 Identities=40% Similarity=0.576 Sum_probs=285.6
Q ss_pred CceEEEEEeCCCCCCccCC--CceEEEcCC-eEEEeecCCC-----CCCCcceeecEeeCCCCChHHHHHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETSG--GVFWKVEDN-RVSLHRQHDT-----PVSGTSYAFDHVFEETCSNARVYELLTKDIIHAA 73 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~--~~~~~v~~~-~v~l~~~~~~-----~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~sv 73 (842)
.+|+|+|||||+.+.|... ..++.++++ .+.++.+... ......|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999988533 456677665 6776643211 1135789999999999999999999999999999
Q ss_pred hcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeeccccccccccccccceeee
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVENQKLQIHE 153 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~~~L~IrE 153 (842)
++|||+||||||||||||||||+|+..++|||||++++||+.++... ..|.|++||+|||||.|+|||++ ...+.+++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEE
Confidence 99999999999999999999999999999999999999999998765 68999999999999999999997 56799999
Q ss_pred cCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeec
Q 003179 154 SLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDL 233 (842)
Q Consensus 154 d~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDL 233 (842)
++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|.|..... ....|+|+||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--------~~~~s~l~~vDL 230 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL--------NKLLGKLSFIDL 230 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC--------CeeEEEEEEeec
Confidence 999999999999999999999999999999999999999999999999999999987654 346799999999
Q ss_pred cCCccccccC-CCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCc
Q 003179 234 AGSERIAKTG-ADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDH 312 (842)
Q Consensus 234 AGSER~~ktg-a~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~ 312 (842)
|||||...++ ..|.+++|+.+||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+|||||||+..+
T Consensus 231 AGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~---~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~ 307 (322)
T cd01367 231 AGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK---AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASS 307 (322)
T ss_pred CCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC---CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhh
Confidence 9999998765 568999999999999999999999999754 699999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhh
Q 003179 313 IEETKGTLQFASRAK 327 (842)
Q Consensus 313 ~eETLsTLrFAsRAk 327 (842)
++||++||+||+|+|
T Consensus 308 ~~eTl~tL~fa~r~k 322 (322)
T cd01367 308 CEHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999986
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=8.8e-77 Score=641.84 Aligned_cols=319 Identities=58% Similarity=0.930 Sum_probs=295.9
Q ss_pred ceEEEEEeCCCCCCccC-CCceEEEcCC-eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCee
Q 003179 3 KICVAVRVRPPVSLETS-GGVFWKVEDN-RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGT 80 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~~-~~~~~~v~~~-~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~T 80 (842)
+|+|+|||||+...|.. ..+.|.++++ .+.+.. +.....|.||+||+++++|++||+.++.|+|+++++|||+|
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~----~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~ 76 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEE----STPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT 76 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcC----CCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence 69999999999988753 3467888877 444432 24568999999999999999999999999999999999999
Q ss_pred EEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeeccccccccccccccceeeecCCCceE
Q 003179 81 VFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVF 160 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~~~L~IrEd~~~gv~ 160 (842)
|||||||||||||||+|+..++|||||++++||..+....+..|.|+|||+|||||+|+|||++....+.+++++.+|++
T Consensus 77 i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~ 156 (321)
T cd01374 77 IFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVV 156 (321)
T ss_pred EEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEE
Confidence 99999999999999999999999999999999999998888899999999999999999999999889999999999999
Q ss_pred ecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccCCcccc
Q 003179 161 VAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSERIA 240 (842)
Q Consensus 161 V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAGSER~~ 240 (842)
+.|++++.|.|+++++.+|..|.++|++++|.+|..|||||+||+|+|.+...... .......|+|+|||||||||..
T Consensus 157 v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~--~~~~~~~s~l~~vDLAGsE~~~ 234 (321)
T cd01374 157 VAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS--ESGTVRVSTLNLIDLAGSERAS 234 (321)
T ss_pred eCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC--CCCcEEEEEEEEEECCCCCccc
Confidence 99999999999999999999999999999999999999999999999998775432 2456788999999999999999
Q ss_pred ccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhHHHHH
Q 003179 241 KTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTL 320 (842)
Q Consensus 241 ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTL 320 (842)
..+ .|.+++|+.+||+||.+|++||.+|+++.+ ..||||||||||+||+|+|||||+|+|||||||...+++||++||
T Consensus 235 ~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~-~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (321)
T cd01374 235 QTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN-SGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTL 312 (321)
T ss_pred cCC-CCccccccchhhhHHHHHHHHHHHHHhcCC-CCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHH
Confidence 998 899999999999999999999999998642 579999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 003179 321 QFASRAKRI 329 (842)
Q Consensus 321 rFAsRAk~I 329 (842)
+||+||++|
T Consensus 313 ~~a~r~~~i 321 (321)
T cd01374 313 KFASRAKKV 321 (321)
T ss_pred HHHHHHhcC
Confidence 999999986
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.3e-76 Score=640.77 Aligned_cols=313 Identities=35% Similarity=0.567 Sum_probs=288.4
Q ss_pred ceEEEEEeCCCCCCccCCCceEEEcCC------eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 3 KICVAVRVRPPVSLETSGGVFWKVEDN------RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~~~~~~~~v~~~------~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
+|+|+|||||+.+.|.....++.+.+. .+.+.++.. ....+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRN-RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCC-CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999999988665566666433 555554432 2456789999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeeccccccccccccccceeeecCC
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLE 156 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~~~L~IrEd~~ 156 (842)
||+||||||||||||||||+|+..++|||||++++||+.++.. ...|.|++||+|||||.|+|||++....+.+++++.
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 158 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ-AWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD 158 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc-cccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence 9999999999999999999999999999999999999988765 368999999999999999999999888899999999
Q ss_pred CceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccCC
Q 003179 157 HGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGS 236 (842)
Q Consensus 157 ~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAGS 236 (842)
++++|.|++++.|.|++|++.++..|..+|.+++|.+|..|||||+||+|.|.+.... ....|+|+|||||||
T Consensus 159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-------~~~~s~l~~VDLAGs 231 (319)
T cd01376 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-------IQLEGKLNLIDLAGS 231 (319)
T ss_pred CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-------ceEEEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999877542 367899999999999
Q ss_pred ccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhH
Q 003179 237 ERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEET 316 (842)
Q Consensus 237 ER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eET 316 (842)
||...++..|.+++|+..||+||++|++||.+|+.+. .|||||||+||+||+|+|||||+|+||+||||...+++||
T Consensus 232 E~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~---~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eT 308 (319)
T cd01376 232 EDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL---PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDT 308 (319)
T ss_pred CcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC---CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHH
Confidence 9999999999999999999999999999999998753 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 003179 317 KGTLQFASRAK 327 (842)
Q Consensus 317 LsTLrFAsRAk 327 (842)
++||+||+|||
T Consensus 309 l~TL~fa~r~~ 319 (319)
T cd01376 309 LSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHhhC
Confidence 99999999986
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=4e-76 Score=637.35 Aligned_cols=318 Identities=48% Similarity=0.730 Sum_probs=292.2
Q ss_pred CCceEEEEEeCCCCCCccC--CCceEEEcCC-eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCC
Q 003179 1 MEKICVAVRVRPPVSLETS--GGVFWKVEDN-RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGF 77 (842)
Q Consensus 1 mE~IrV~VRVRP~~~~E~~--~~~~~~v~~~-~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~Gy 77 (842)
|++|+|+|||||+...|.. ...++.+.++ +|.+..+ ...+.|.||+||+++++|++||+.++.|+|+++++|+
T Consensus 1 ~~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 1 ECNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 6899999999999988743 3345666555 5555432 3567899999999999999999999999999999999
Q ss_pred CeeEEeeccCCCCccccccCCCC---CCChHHhHHHHHHHHHHhcc-ccceEEEEeeeeeeccccccccccccccceeee
Q 003179 78 NGTVFAYGQTSSGKTFTMNGSAD---NPGVISLGVKDIFDAIQMMS-NREFLVRVSYMEIYNEEINDLLAVENQKLQIHE 153 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~Gs~~---~~GIIPRal~dLF~~I~~~~-~~ef~V~VSylEIYNE~V~DLL~~~~~~L~IrE 153 (842)
|+||||||||||||||||+|+.. ++|||||++++||+.+.... +..|.|++||+|||||.++|||++....+.+++
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~ 156 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHE 156 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEE
Confidence 99999999999999999999987 89999999999999997653 447999999999999999999999888999999
Q ss_pred cCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeec
Q 003179 154 SLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDL 233 (842)
Q Consensus 154 d~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDL 233 (842)
++.+|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+.+.. ......|+|+||||
T Consensus 157 ~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~-----~~~~~~s~l~~VDL 231 (325)
T cd01369 157 DKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE-----TGSKKRGKLFLVDL 231 (325)
T ss_pred cCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC-----CCCEEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999887643 23467899999999
Q ss_pred cCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCch
Q 003179 234 AGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHI 313 (842)
Q Consensus 234 AGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~ 313 (842)
|||||..++++.|.+++|+..||+||.+|++||.+|+++.+ .|||||||+||+||+|+|||||+|+||+||||+..++
T Consensus 232 AGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~--~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~ 309 (325)
T cd01369 232 AGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS--THIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNE 309 (325)
T ss_pred CCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC--CcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccH
Confidence 99999999999999999999999999999999999998643 6999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhcc
Q 003179 314 EETKGTLQFASRAKRI 329 (842)
Q Consensus 314 eETLsTLrFAsRAk~I 329 (842)
+||++||+||+|||+|
T Consensus 310 ~eTl~TL~~a~r~~~i 325 (325)
T cd01369 310 SETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999999987
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1e-75 Score=637.59 Aligned_cols=321 Identities=43% Similarity=0.691 Sum_probs=291.7
Q ss_pred ceEEEEEeCCCCCCccCCC--ceEEEcCC--eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC
Q 003179 3 KICVAVRVRPPVSLETSGG--VFWKVEDN--RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFN 78 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~~~~--~~~~v~~~--~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN 78 (842)
.|+|+||+||+...|...+ ..+.+..+ .+.+. ..+.|.||+||+++++|++||+.++.|+|+++++|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~-------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n 74 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG-------TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYN 74 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec-------CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 6999999999998886543 34444333 44432 2578999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCccccccCCC------CCCChHHhHHHHHHHHHHhccc-cceEEEEeeeeeeccccccccccc---ccc
Q 003179 79 GTVFAYGQTSSGKTFTMNGSA------DNPGVISLGVKDIFDAIQMMSN-REFLVRVSYMEIYNEEINDLLAVE---NQK 148 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~Gs~------~~~GIIPRal~dLF~~I~~~~~-~ef~V~VSylEIYNE~V~DLL~~~---~~~ 148 (842)
+||||||||||||||||+|+. .++|||||++++||+.++.... ..|.|.|||+|||||.|+|||++. ...
T Consensus 75 ~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~ 154 (341)
T cd01372 75 ATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSP 154 (341)
T ss_pred cceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCC
Confidence 999999999999999999974 5799999999999999987655 789999999999999999999987 478
Q ss_pred ceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCC-----CCCCce
Q 003179 149 LQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDS-----SSTDAI 223 (842)
Q Consensus 149 L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~-----~~~~~v 223 (842)
+.+++++.++++|.|++++.|.|++|++.+|..|..+|..++|.+|..|||||+||+|.|.+....... ......
T Consensus 155 l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd01372 155 IQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNST 234 (341)
T ss_pred ceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999988764211 134467
Q ss_pred EEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeee
Q 003179 224 RVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSII 303 (842)
Q Consensus 224 ~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mI 303 (842)
..|+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|+.+.++..|||||+|+||+||+|+||||++|+||
T Consensus 235 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I 314 (341)
T cd01372 235 LTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMI 314 (341)
T ss_pred eeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 78999999999999999999999999999999999999999999999876556899999999999999999999999999
Q ss_pred ecCCCCcCchHhHHHHHHHHHHhhccc
Q 003179 304 CTIAPEEDHIEETKGTLQFASRAKRIT 330 (842)
Q Consensus 304 atISPs~~~~eETLsTLrFAsRAk~Ik 330 (842)
+||||...+++||++||+||+||++|+
T Consensus 315 ~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 315 ACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.1e-75 Score=632.88 Aligned_cols=318 Identities=44% Similarity=0.682 Sum_probs=286.5
Q ss_pred ceEEEEEeCCCCCCccCCCceEEEcCCeEEEeecCCC-------CCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhc
Q 003179 3 KICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDT-------PVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVE 75 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~~~~~~~~v~~~~v~l~~~~~~-------~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~ 75 (842)
.|+|+||+||+...+.. ...+..++..+++..+... ......|.||+||++ ++|++||+.++.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~ 78 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS-SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALD 78 (334)
T ss_pred CeEEEEECCCCCCCCCc-cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhC
Confidence 48999999999885533 2233334455565443221 224567999999999 99999999999999999999
Q ss_pred CCCeeEEeeccCCCCccccccCCC---CCCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccccccccc------
Q 003179 76 GFNGTVFAYGQTSSGKTFTMNGSA---DNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN------ 146 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM~Gs~---~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~------ 146 (842)
|||+||||||||||||||||+|+. .++|||||++++||+.++...+..|.|++||+|||||+|+|||++..
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~ 158 (334)
T cd01375 79 GYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESL 158 (334)
T ss_pred CCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccccC
Confidence 999999999999999999999976 47899999999999999998888999999999999999999999874
Q ss_pred ccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEE
Q 003179 147 QKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVS 226 (842)
Q Consensus 147 ~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~S 226 (842)
..+.+++++.++++|.|++++.|.+++|++.++..|..+|.+++|.+|..|||||+||+|.|.+..... .......|
T Consensus 159 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~---~~~~~~~s 235 (334)
T cd01375 159 PAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA---GSEVVRLS 235 (334)
T ss_pred CceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC---CCCceEEE
Confidence 578999999999999999999999999999999999999999999999999999999999999875543 23467789
Q ss_pred eEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecC
Q 003179 227 VLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTI 306 (842)
Q Consensus 227 kL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatI 306 (842)
+|+|||||||||..++++.|..++|++.||+||.+|++||.+|+.+. ..||||||||||+||+|+|||||+|+||+||
T Consensus 236 ~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~--~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v 313 (334)
T cd01375 236 KLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA--RTHVPYRNSKLTHVLRDSLGGNCKTVMLATI 313 (334)
T ss_pred EEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC--CCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999764 4799999999999999999999999999999
Q ss_pred CCCcCchHhHHHHHHHHHHhh
Q 003179 307 APEEDHIEETKGTLQFASRAK 327 (842)
Q Consensus 307 SPs~~~~eETLsTLrFAsRAk 327 (842)
||+..+++||++||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.6e-73 Score=614.80 Aligned_cols=318 Identities=41% Similarity=0.662 Sum_probs=290.8
Q ss_pred CceEEEEEeCCCCCCccCC-CceEEEcCC---eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCC
Q 003179 2 EKICVAVRVRPPVSLETSG-GVFWKVEDN---RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGF 77 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~-~~~~~v~~~---~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~Gy 77 (842)
++|+|+||+||+...|... ...+.+.++ .+.+... +...+.|.||+||+++++|++||+.+ .|+|+++++|+
T Consensus 2 ~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G~ 77 (329)
T cd01366 2 GNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG---TGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQSALDGY 77 (329)
T ss_pred CCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC---CCCceEEecCEEECCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 6899999999999887532 345666554 3333221 24567899999999999999999985 89999999999
Q ss_pred CeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc--ccceEEEEeeeeeeccccccccccc---cccceee
Q 003179 78 NGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS--NREFLVRVSYMEIYNEEINDLLAVE---NQKLQIH 152 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~--~~ef~V~VSylEIYNE~V~DLL~~~---~~~L~Ir 152 (842)
|+||||||+|||||||||+|+..++|||||++++||+.++... +..|.|++||+|||||+|+|||++. ...+.++
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~ 157 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIK 157 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEE
Confidence 9999999999999999999999999999999999999998765 4789999999999999999999987 6789999
Q ss_pred ecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEee
Q 003179 153 ESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVD 232 (842)
Q Consensus 153 Ed~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVD 232 (842)
+++.+++++.|++++.|.|++|+..++..|..+|.++.|.+|..|||||+||+|+|.+.... ......|+|+|||
T Consensus 158 ~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~-----~~~~~~s~l~~VD 232 (329)
T cd01366 158 HDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ-----TGEQTRGKLNLVD 232 (329)
T ss_pred ECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC-----CCcEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999887653 3356789999999
Q ss_pred ccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCc
Q 003179 233 LAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDH 312 (842)
Q Consensus 233 LAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~ 312 (842)
|||||+..++++.|.+++|+..||+||.+|++||.+|+.+ ..|||||+|+||+||+|+||||++|+||+||||...+
T Consensus 233 LaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~---~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~ 309 (329)
T cd01366 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK---DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESN 309 (329)
T ss_pred CCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC---CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhh
Confidence 9999999999999999999999999999999999999875 4699999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcccc
Q 003179 313 IEETKGTLQFASRAKRITN 331 (842)
Q Consensus 313 ~eETLsTLrFAsRAk~IkN 331 (842)
++||++||+||+||++|+|
T Consensus 310 ~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 310 LSETLCSLRFASRVRSVEL 328 (329)
T ss_pred HHHHHHHHHHHHHhhcccC
Confidence 9999999999999999986
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.7e-72 Score=610.17 Aligned_cols=329 Identities=50% Similarity=0.744 Sum_probs=301.7
Q ss_pred ceEEEEEeCCCCCCccC--CCceEEEcCC---eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCC
Q 003179 3 KICVAVRVRPPVSLETS--GGVFWKVEDN---RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGF 77 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~~--~~~~~~v~~~---~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~Gy 77 (842)
+|+|+|||||+...|.. ....|.+.++ .+.+.+.. .......|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK-NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC-CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCC
Confidence 69999999999988753 3456777655 56655432 234568899999999999999999999999999999999
Q ss_pred CeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc-ccceEEEEeeeeeeccccccccccccccceeeecCC
Q 003179 78 NGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS-NREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLE 156 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~-~~ef~V~VSylEIYNE~V~DLL~~~~~~L~IrEd~~ 156 (842)
|+||||||+|||||||||+|+..++|||||++++||+.+.... +..|.|+|||+|||+|.|+|||++....+.+++++.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~ 159 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKK 159 (335)
T ss_pred ceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCC
Confidence 9999999999999999999999999999999999999997654 568999999999999999999999999999999999
Q ss_pred CceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccCC
Q 003179 157 HGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGS 236 (842)
Q Consensus 157 ~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAGS 236 (842)
+++++.|++++.|.|+++++++|..|..+|.+++|.+|..|||||+||+|+|.+..... .......|+|+||||||+
T Consensus 160 ~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~---~~~~~~~s~l~~VDLaGs 236 (335)
T smart00129 160 GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS---SSGSGKASKLNLVDLAGS 236 (335)
T ss_pred CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC---CCCCEEEEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999774332 244678899999999999
Q ss_pred ccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhH
Q 003179 237 ERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEET 316 (842)
Q Consensus 237 ER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eET 316 (842)
||....++.|.+++|+..||+||.+|++||.+|+++. +..|||||+|+||+||+++|||+++|+||+||+|...+++||
T Consensus 237 e~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~-~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eT 315 (335)
T smart00129 237 ERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ-KSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEET 315 (335)
T ss_pred CccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC-CCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHH
Confidence 9999999999999999999999999999999999753 457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccceec
Q 003179 317 KGTLQFASRAKRITNCVQVN 336 (842)
Q Consensus 317 LsTLrFAsRAk~IkN~~~vN 336 (842)
++||+||+++++|+|.|++|
T Consensus 316 l~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 316 LSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999875
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.8e-71 Score=599.48 Aligned_cols=321 Identities=51% Similarity=0.778 Sum_probs=295.7
Q ss_pred ceEEEEEeCCCCCCcc-CCCceEEEcC-CeEEEeecCC-CCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCe
Q 003179 3 KICVAVRVRPPVSLET-SGGVFWKVED-NRVSLHRQHD-TPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNG 79 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~-~~~~~~~v~~-~~v~l~~~~~-~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~ 79 (842)
+|+|+||+||+...|. ....++.+++ ++|.+..+.. .+.....|.||+||+++++|++||+.++.|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 6999999999988763 3456788887 7777765432 23456899999999999999999999999999999999999
Q ss_pred eEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc--ccceEEEEeeeeeeccccccccccc--cccceeeecC
Q 003179 80 TVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS--NREFLVRVSYMEIYNEEINDLLAVE--NQKLQIHESL 155 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~--~~ef~V~VSylEIYNE~V~DLL~~~--~~~L~IrEd~ 155 (842)
||||||+|||||||||+|+..++|||||++++||+.+.... ...|.|++||+|||+|+|+|||++. ...+.+++++
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~ 160 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDP 160 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcC
Confidence 99999999999999999999999999999999999998776 5789999999999999999999997 8899999999
Q ss_pred CCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccC
Q 003179 156 EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAG 235 (842)
Q Consensus 156 ~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAG 235 (842)
.+++++.|++++.|.|++|++.++..|..+|.+++|.+|..|||||+||+|.|.+...... ......|+|+||||||
T Consensus 161 ~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~---~~~~~~s~l~~VDLaG 237 (328)
T cd00106 161 KGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTND---GRSIKSSKLNLVDLAG 237 (328)
T ss_pred CCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCC---CccEEEEEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999999998876532 1247789999999999
Q ss_pred CccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHh
Q 003179 236 SERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEE 315 (842)
Q Consensus 236 SER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eE 315 (842)
+|+....+..+.+++|+..||+||.+|++||.+|+.+.+ ..|||||+||||+||+|+|||+++|+||+||+|...+++|
T Consensus 238 se~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~-~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~e 316 (328)
T cd00106 238 SERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK-KKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDE 316 (328)
T ss_pred CCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC-CCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHH
Confidence 999999999999999999999999999999999998652 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 003179 316 TKGTLQFASRAK 327 (842)
Q Consensus 316 TLsTLrFAsRAk 327 (842)
|++||+||+|||
T Consensus 317 Tl~tL~~a~r~~ 328 (328)
T cd00106 317 TLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=8e-73 Score=658.23 Aligned_cols=325 Identities=41% Similarity=0.600 Sum_probs=290.8
Q ss_pred CceEEEEEeCCCCCCccCCC-ceEE-EcC-CeEEEeecCCC-CCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCC
Q 003179 2 EKICVAVRVRPPVSLETSGG-VFWK-VED-NRVSLHRQHDT-PVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGF 77 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~-~~~~-v~~-~~v~l~~~~~~-~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~Gy 77 (842)
++|||+|||||+.+.+.... ..+. .++ ..+.+..+... +.....|.||+||+|.++|++||..+ .|+|.++++||
T Consensus 314 GnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~lDGY 392 (670)
T KOG0239|consen 314 GNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQSALDGY 392 (670)
T ss_pred cCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHHHHHhcCc
Confidence 69999999999999886632 2222 222 23455443322 22233699999999999999999997 89999999999
Q ss_pred CeeEEeeccCCCCccccccC-CCCCCChHHhHHHHHHHHHHhcc-ccceEEEEeeeeeeccccccccccc--cccceeee
Q 003179 78 NGTVFAYGQTSSGKTFTMNG-SADNPGVISLGVKDIFDAIQMMS-NREFLVRVSYMEIYNEEINDLLAVE--NQKLQIHE 153 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~G-s~~~~GIIPRal~dLF~~I~~~~-~~ef~V~VSylEIYNE~V~DLL~~~--~~~L~IrE 153 (842)
|+||||||||||||||||.| +++++|||||++++||..+.... ++.|.+.+||+|||||.|+|||++. ..++.|++
T Consensus 393 nVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~ 472 (670)
T KOG0239|consen 393 NVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVD 472 (670)
T ss_pred ceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEE
Confidence 99999999999999999999 78999999999999999998654 5799999999999999999999987 47899999
Q ss_pred cCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeec
Q 003179 154 SLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDL 233 (842)
Q Consensus 154 d~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDL 233 (842)
+++++.+|.+++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+++|...+. .++....+.|+||||
T Consensus 473 ~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~-----~t~~~~~g~l~LVDL 547 (670)
T KOG0239|consen 473 DAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINE-----LTGIRVTGVLNLVDL 547 (670)
T ss_pred cCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecccc-----CcccccccceeEeec
Confidence 999999999999999999999999999999999999999999999999999999987643 344566799999999
Q ss_pred cCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCch
Q 003179 234 AGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHI 313 (842)
Q Consensus 234 AGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~ 313 (842)
|||||++++++.|+|++|+.+||+||++||+||.||+. +..||||||||||+||+|+|||++||+|+++|||...++
T Consensus 548 AGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~---k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~ 624 (670)
T KOG0239|consen 548 AGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS---KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAAL 624 (670)
T ss_pred ccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh---cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHH
Confidence 99999999999999999999999999999999999986 567999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhccccccee
Q 003179 314 EETKGTLQFASRAKRITNCVQV 335 (842)
Q Consensus 314 eETLsTLrFAsRAk~IkN~~~v 335 (842)
.||+++|+||.|++.+...+..
T Consensus 625 ~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 625 FETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hhhhhccchHHHhhceeccccc
Confidence 9999999999999999876544
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=7.5e-72 Score=604.06 Aligned_cols=319 Identities=46% Similarity=0.753 Sum_probs=279.8
Q ss_pred EeCCCCCCccCCCc--eEEEcC---CeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEe
Q 003179 9 RVRPPVSLETSGGV--FWKVED---NRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFA 83 (842)
Q Consensus 9 RVRP~~~~E~~~~~--~~~v~~---~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfA 83 (842)
||||++..|...+. .+.+.+ .................|.||+||+++++|++||+.++.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 99999998865443 333332 1111111122234567899999999999999999999999999999999999999
Q ss_pred eccCCCCccccccCC--CCCCChHHhHHHHHHHHHHhccc---cceEEEEeeeeeeccccccccccc----cccceeeec
Q 003179 84 YGQTSSGKTFTMNGS--ADNPGVISLGVKDIFDAIQMMSN---REFLVRVSYMEIYNEEINDLLAVE----NQKLQIHES 154 (842)
Q Consensus 84 YGQTGSGKTyTM~Gs--~~~~GIIPRal~dLF~~I~~~~~---~ef~V~VSylEIYNE~V~DLL~~~----~~~L~IrEd 154 (842)
||+|||||||||+|+ ..++|||||++++||..+..... ..|.|+|||+|||||+|+|||++. ...+.++++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 88999999999999999988665 489999999999999999999988 357999999
Q ss_pred CCCc-eEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeec
Q 003179 155 LEHG-VFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDL 233 (842)
Q Consensus 155 ~~~g-v~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDL 233 (842)
+..| ++|.|++++.|.++++++.+|..|..+|.++.|.+|..|||||+||+|.|.+......... .....|+|+||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~-~~~~~s~l~~vDL 239 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDE-ESVKHSRLTFVDL 239 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEE-EEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccc-cceeecceeeeec
Confidence 9877 9999999999999999999999999999999999999999999999999999887643211 2367899999999
Q ss_pred cCCccccccCC-CchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCc
Q 003179 234 AGSERIAKTGA-DGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDH 312 (842)
Q Consensus 234 AGSER~~ktga-~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~ 312 (842)
||+|+..+.++ .+.+++|++.||+||.+|++||.+|+.+ ....|||||+||||+||+|+|||||+|+||+||+|...+
T Consensus 240 aGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~-~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 240 AGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG-SKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT-TSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred ccccccccccccccccccccceecchhhhhhhhHhhhhcc-ccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 99999999886 4888999999999999999999999987 346799999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcc
Q 003179 313 IEETKGTLQFASRAKRI 329 (842)
Q Consensus 313 ~eETLsTLrFAsRAk~I 329 (842)
++||++||+||+++++|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999987
No 25
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-70 Score=633.78 Aligned_cols=376 Identities=39% Similarity=0.557 Sum_probs=327.4
Q ss_pred eCCCCCCccCCCce--EEEcCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccC
Q 003179 10 VRPPVSLETSGGVF--WKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQT 87 (842)
Q Consensus 10 VRP~~~~E~~~~~~--~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQT 87 (842)
|||+...|...|+. ..+..+.-.+. .+...+|+||+||+...+|.++|+.++.|+++.+++|||+|++|||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~-----ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQt 75 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVA-----IGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQT 75 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCcee-----ecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeeccc
Confidence 69999988766553 22222221111 145688999999999999999999999999999999999999999999
Q ss_pred CCCccccccCC----CCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccccccccc--ccceeeecCCCceEe
Q 003179 88 SSGKTFTMNGS----ADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN--QKLQIHESLEHGVFV 161 (842)
Q Consensus 88 GSGKTyTM~Gs----~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~--~~L~IrEd~~~gv~V 161 (842)
||||||||.++ .++.|+|||++.++|..|.......|.|.|||+|||++.|+|||.|.. ..+.+++ +.+++.+
T Consensus 76 gsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~ 154 (913)
T KOG0244|consen 76 GSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITI 154 (913)
T ss_pred CCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEE
Confidence 99999999987 234599999999999999988888999999999999999999999655 3467777 7788999
Q ss_pred cCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccCCccccc
Q 003179 162 AGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAK 241 (842)
Q Consensus 162 ~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAGSER~~k 241 (842)
.|+++..|.+..+++..|..|...|++++|+||..|||||+||++.+++..... ......++|+|||||||||.++
T Consensus 155 ~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~----~~s~~~sKlhlVDLAGSER~kk 230 (913)
T KOG0244|consen 155 RGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS----KRSSFCSKLHLVDLAGSERVKK 230 (913)
T ss_pred EeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh----ccchhhhhhheeeccccccccc
Confidence 999999999999999999999999999999999999999999999998866543 2235579999999999999999
Q ss_pred cCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhHHHHHH
Q 003179 242 TGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQ 321 (842)
Q Consensus 242 tga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLr 321 (842)
|+++|+|++||.+||.+|++||+||.||.+..+ .+|||||||||||||||+||||+.|+||+||||+..++.||++||+
T Consensus 231 T~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk-~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ 309 (913)
T KOG0244|consen 231 TKAEGDRLKEGININGGLLALGNVISALGEAKK-GGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR 309 (913)
T ss_pred cccchhhhhhccCcchHHHHHHHHHHHHHhhhc-CCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH
Confidence 999999999999999999999999999998755 7899999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 322 FASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLELEEERR 397 (842)
Q Consensus 322 FAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~elee~~~ 397 (842)
||.||+.|+|+|++|.+ +....+..++.+|+.|+..|...+...+..+++.++.+....+.....+..+..+.+.
T Consensus 310 ya~Rak~iknk~vvN~d-~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s 384 (913)
T KOG0244|consen 310 YADRAKQIKNKPVVNQD-PKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQEKGEERS 384 (913)
T ss_pred HhhHHHHhccccccccc-HHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcchhhhhh
Confidence 99999999999999985 4456788999999999999988765556777777776666665555666555544443
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-66 Score=587.68 Aligned_cols=332 Identities=33% Similarity=0.547 Sum_probs=296.2
Q ss_pred CCceEEEEEeCCCCCCccCCCceEEEcCCeEEEeecC--------CCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHH
Q 003179 1 MEKICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQH--------DTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHA 72 (842)
Q Consensus 1 mE~IrV~VRVRP~~~~E~~~~~~~~v~~~~v~l~~~~--------~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~s 72 (842)
++.|.|+||+||+.+...+.++...+++.++.+..+. +.+.....|.|.+||+|+++|.+||+.++.|+|.+
T Consensus 30 ~d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~d 109 (809)
T KOG0247|consen 30 KDPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKD 109 (809)
T ss_pred hcchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHH
Confidence 4678999999999865555566667777788776332 22344578999999999999999999999999999
Q ss_pred HhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHh----------------------------------
Q 003179 73 AVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQM---------------------------------- 118 (842)
Q Consensus 73 vL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~---------------------------------- 118 (842)
++.|.|..+|+||.|||||||||+|++.++||+||+++-||..|+.
T Consensus 110 lLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~ 189 (809)
T KOG0247|consen 110 LLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAML 189 (809)
T ss_pred HHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhcc
Confidence 9999999999999999999999999999999999999999988741
Q ss_pred ------c-------------------------cccceEEEEeeeeeecccccccccccc-----c-cceeeecCCCceEe
Q 003179 119 ------M-------------------------SNREFLVRVSYMEIYNEEINDLLAVEN-----Q-KLQIHESLEHGVFV 161 (842)
Q Consensus 119 ------~-------------------------~~~ef~V~VSylEIYNE~V~DLL~~~~-----~-~L~IrEd~~~gv~V 161 (842)
. .+..|.|+|||+|||||-|||||.+.+ . ...+++|.++..||
T Consensus 190 nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~V 269 (809)
T KOG0247|consen 190 NDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYV 269 (809)
T ss_pred ccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeee
Confidence 0 122488999999999999999998764 2 25678899999999
Q ss_pred cCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccCCccccc
Q 003179 162 AGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAK 241 (842)
Q Consensus 162 ~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAGSER~~k 241 (842)
.|+++|.|.+.+|++.+|..|.++|.+++|..|..|||||+||+|.|-+..... ....+.+|.|.|||||||||..+
T Consensus 270 kgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~---~s~~i~vSqlsLvDLAGSERt~r 346 (809)
T KOG0247|consen 270 KGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ---DSNQITVSQLSLVDLAGSERTNR 346 (809)
T ss_pred ccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc---ccCceeEEeeeeeecccchhccc
Confidence 999999999999999999999999999999999999999999999998887663 24578899999999999999999
Q ss_pred cCCCchhhhhhhhhhHHHHHHHHHHHHhccCC--CCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhHHHH
Q 003179 242 TGADGVRLKEGKHINKSLMALGNVINKLSDGV--KQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGT 319 (842)
Q Consensus 242 tga~G~rlkEg~~INkSL~aLg~VI~ALSe~~--kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsT 319 (842)
+++.|.|++||++||.||++||+||.+|...+ +...+|||||||||++++.+|.|..+.+||+||+|.+.+|+|+++.
T Consensus 347 tq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~v 426 (809)
T KOG0247|consen 347 TQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNV 426 (809)
T ss_pred ccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHH
Confidence 99999999999999999999999999998755 3346899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccee
Q 003179 320 LQFASRAKRITNCVQV 335 (842)
Q Consensus 320 LrFAsRAk~IkN~~~v 335 (842)
|+||.-|..|.+...+
T Consensus 427 lkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 427 LKFAEIAQEVEVARPV 442 (809)
T ss_pred HHHHHhcccccccCcc
Confidence 9999999999876555
No 27
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.2e-66 Score=572.97 Aligned_cols=320 Identities=38% Similarity=0.574 Sum_probs=282.2
Q ss_pred CceEEEEEeCCCCCCccCC--CceEEE-cCCeEEEeecCCC-----CCCCcceeecEeeCCCCChHHHHHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETSG--GVFWKV-EDNRVSLHRQHDT-----PVSGTSYAFDHVFEETCSNARVYELLTKDIIHAA 73 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~--~~~~~v-~~~~v~l~~~~~~-----~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~sv 73 (842)
.+|.||||-||++..|... -.++.| .++.+++|.+... ......|.||++||+.++++.||..+++|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 5799999999999998543 234555 5566666543211 1346789999999999999999999999999999
Q ss_pred hcCCCeeEEeeccCCCCccccccCCCC------CCChHHhHHHHHHHHHHhc--cccceEEEEeeeeeeccccccccccc
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTMNGSAD------NPGVISLGVKDIFDAIQMM--SNREFLVRVSYMEIYNEEINDLLAVE 145 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM~Gs~~------~~GIIPRal~dLF~~I~~~--~~~ef~V~VSylEIYNE~V~DLL~~~ 145 (842)
|+|--+|+||||||||||||||.|... ..||..++.+|+|..+... ....+.|++||+|||+.+|||||+.
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~- 366 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND- 366 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-
Confidence 999999999999999999999999643 3499999999999998763 3457899999999999999999986
Q ss_pred cccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEE
Q 003179 146 NQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRV 225 (842)
Q Consensus 146 ~~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~ 225 (842)
..+|.+.||.+..+.|-||++..|.+.++++.+|..|+..|++|.|..|..|||||+||+|.+.... ....+
T Consensus 367 k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~--------~~k~h 438 (676)
T KOG0246|consen 367 KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG--------EFKLH 438 (676)
T ss_pred ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC--------cceeE
Confidence 5689999999999999999999999999999999999999999999999999999999999996432 13467
Q ss_pred EeEEEeeccCCccccccC-CCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCC-Ccceeee
Q 003179 226 SVLNLVDLAGSERIAKTG-ADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGG-NAKTSII 303 (842)
Q Consensus 226 SkL~LVDLAGSER~~ktg-a~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGG-NskT~mI 303 (842)
+++.||||||+||...|. ++.+...||+.|||||+||..||+||.. +..|+|||.||||.+|+|||=| |++|+||
T Consensus 439 GKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~---nk~H~PFR~SKLTqVLRDSFIGenSrTcMI 515 (676)
T KOG0246|consen 439 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR---NKSHLPFRGSKLTQVLRDSFIGENSRTCMI 515 (676)
T ss_pred eEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcC---CCCCCCchhhhHHHHHHHhhcCCCCceEEE
Confidence 999999999999987764 5667788999999999999999999975 4569999999999999999988 9999999
Q ss_pred ecCCCCcCchHhHHHHHHHHHHhhcccccc
Q 003179 304 CTIAPEEDHIEETKGTLQFASRAKRITNCV 333 (842)
Q Consensus 304 atISPs~~~~eETLsTLrFAsRAk~IkN~~ 333 (842)
+||||...+.+.||+||+||+|+|...-..
T Consensus 516 A~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 516 ATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred EEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999886433
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-62 Score=567.78 Aligned_cols=321 Identities=50% Similarity=0.763 Sum_probs=286.4
Q ss_pred CceEEEEEeCCCCCCccCCCceEEEc-CCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCee
Q 003179 2 EKICVAVRVRPPVSLETSGGVFWKVE-DNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGT 80 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~~~~~v~-~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~T 80 (842)
+++++.++..|....+ ..+... +..+.+.. ....+|.||+||++.++|++||+.+++|+++.++.|||+|
T Consensus 22 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~T 92 (568)
T COG5059 22 SDIKSTIRIIPGELGE----RLINTSKKSHVSLEK-----SKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCT 92 (568)
T ss_pred cCceEEEeecCCCcch----heeeccccccccccc-----ccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccce
Confidence 5677777777754432 111221 11222111 1145799999999999999999999999999999999999
Q ss_pred EEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc-ccceEEEEeeeeeeccccccccccccccceeeecCCCce
Q 003179 81 VFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS-NREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGV 159 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~-~~ef~V~VSylEIYNE~V~DLL~~~~~~L~IrEd~~~gv 159 (842)
|||||||||||||||.|..+++||||+++.+||+.+.... +..|.|.+||+|||||+++|||.+....+.++++...++
T Consensus 93 vfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v 172 (568)
T COG5059 93 VFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGV 172 (568)
T ss_pred EEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCce
Confidence 9999999999999999999999999999999999998654 467999999999999999999998887788999999999
Q ss_pred EecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccCCccc
Q 003179 160 FVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSERI 239 (842)
Q Consensus 160 ~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAGSER~ 239 (842)
+|.|+++..+.++++++.+|..|..+|.++.|.+|..|||||+||++.+.+.....+ ....++|+||||||||++
T Consensus 173 ~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~-----~~~~~~l~lvDLagSE~~ 247 (568)
T COG5059 173 KVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG-----TSETSKLSLVDLAGSERA 247 (568)
T ss_pred EeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc-----ceecceEEEEeecccccc
Confidence 999999999999999999999999999999999999999999999999998887543 222379999999999999
Q ss_pred cccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhHHHH
Q 003179 240 AKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGT 319 (842)
Q Consensus 240 ~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsT 319 (842)
..++..+.+++||..||+||.+||+||++|.+. ++..|||||+|||||+|+++|||+|+|.|||||+|...++++|.+|
T Consensus 248 ~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~-~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~t 326 (568)
T COG5059 248 ARTGNRGTRLKEGASINKSLLTLGNVINALGDK-KKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINT 326 (568)
T ss_pred chhhcccchhhhhhhhHhhHHHHHHHHHHHhcc-ccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHH
Confidence 999999999999999999999999999999874 3567999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccceecc
Q 003179 320 LQFASRAKRITNCVQVNE 337 (842)
Q Consensus 320 LrFAsRAk~IkN~~~vNe 337 (842)
|+||.||+.|+|.+.+|.
T Consensus 327 L~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 327 LKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHHHhhcCCcccccC
Confidence 999999999999999996
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=8.2e-51 Score=408.39 Aligned_cols=179 Identities=47% Similarity=0.786 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccc
Q 003179 61 VYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEIND 140 (842)
Q Consensus 61 VYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~D 140 (842)
||+.++ |+|..+++|||+||||||||||||||||+|+..++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999999999999999999988
Q ss_pred ccccccccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCC
Q 003179 141 LLAVENQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSST 220 (842)
Q Consensus 141 LL~~~~~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~ 220 (842)
++.++..|..+|..+.|.+|..|||||+||+|+|.+...... ..
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~--~~ 101 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS--AT 101 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC--Cc
Confidence 889999999999999999999999999999999998776542 23
Q ss_pred CceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcce
Q 003179 221 DAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKT 300 (842)
Q Consensus 221 ~~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT 300 (842)
.....|+|+||||||||+..++++.+.+++|++.||+||.+|++||.+|+++ ..||||||||||+||+|+|||||+|
T Consensus 102 ~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~---~~~vpyr~SkLT~lL~~~L~g~~~t 178 (186)
T cd01363 102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAER---DSHVPYRESKLTRLLQDSLGGNSRT 178 (186)
T ss_pred cceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcC---CCCCCCcccHHHHHHHHhcCCCCeE
Confidence 4667899999999999999999999999999999999999999999999875 3599999999999999999999999
Q ss_pred eeeecCCC
Q 003179 301 SIICTIAP 308 (842)
Q Consensus 301 ~mIatISP 308 (842)
+||+||||
T Consensus 179 ~~i~~vsP 186 (186)
T cd01363 179 LMVACISP 186 (186)
T ss_pred EEEEEeCc
Confidence 99999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.00 E-value=5.6e-08 Score=114.24 Aligned_cols=251 Identities=24% Similarity=0.290 Sum_probs=150.2
Q ss_pred ceEEEEEeCCCCCCccCCCceEEE------cCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 3 KICVAVRVRPPVSLETSGGVFWKV------EDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~~~~~~~~v------~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
+++|+|+|+|...........+.. -.+.+......+.+.....|.||.+|.+...+..++... ...++..++|
T Consensus 306 ~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~ 384 (568)
T COG5059 306 NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQ-SQLSQSSLSG 384 (568)
T ss_pred cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHH-Hhhhhhhhhh
Confidence 789999999987542110000000 011111111011223445799999999998888888765 4567777888
Q ss_pred CCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccc--cceEEEEeeeeeeccccccccccccc-cc-eee
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSN--REFLVRVSYMEIYNEEINDLLAVENQ-KL-QIH 152 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~--~ef~V~VSylEIYNE~V~DLL~~~~~-~L-~Ir 152 (842)
+++||++++|+++||.- ...++.+-.+...|..+..... ..+...+-++++|-....++...... +. .+.
T Consensus 385 ----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 458 (568)
T COG5059 385 ----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIH 458 (568)
T ss_pred ----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 99999999999999963 3346666666777777664332 23334444555552222222221110 00 000
Q ss_pred ecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEee
Q 003179 153 ESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVD 232 (842)
Q Consensus 153 Ed~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVD 232 (842)
....-+.-...+.........+..... .+...+..+.+..|..++++|++|+......... .... . ++.||
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-----~~~~--~-~n~~~ 529 (568)
T COG5059 459 KLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS-----TKEL--S-LNQVD 529 (568)
T ss_pred HHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhh-----hHHH--H-hhhhh
Confidence 000000000000001111112222222 4566788899999999999999997766433221 1111 1 79999
Q ss_pred ccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhc
Q 003179 233 LAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLS 270 (842)
Q Consensus 233 LAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALS 270 (842)
|||+||. ...+-|.++++...+|++|..+|.+|.++.
T Consensus 530 ~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 530 LAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred ccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 9999999 888899999999999999999999998764
No 31
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.67 E-value=2 Score=52.80 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=26.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003179 535 NYRDVQKLKRQLENVTEEKNEFQRKYSEE 563 (842)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (842)
+++||+.|++||..+..+|..|.....+-
T Consensus 263 ~~~EiqKL~qQL~qve~EK~~L~~~L~e~ 291 (717)
T PF09730_consen 263 NLSEIQKLKQQLLQVEREKSSLLSNLQES 291 (717)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56999999999999999999998887765
No 32
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.52 E-value=0.42 Score=59.37 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHHhc
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREI 587 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (842)
.|-..|-.++|...|+.+++-++.-+.-.+.|.++.|..++.+|+..+++-
T Consensus 408 ke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s 458 (1195)
T KOG4643|consen 408 KEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRS 458 (1195)
T ss_pred HHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667788888999999999998888899999999999999998877653
No 33
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.03 E-value=0.8 Score=54.24 Aligned_cols=261 Identities=20% Similarity=0.208 Sum_probs=138.0
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHHHHhhHHHH-Hhhhhh---------hhhhHhhhHHHHHHHhcchhhhhhhhcchhHH
Q 003179 534 ENY-RDVQKLKRQLENVTEEKNEFQRKYSEEK-ILNARL---------TGEISELRQEVLVIREIPRRLYESVVSSKDFY 602 (842)
Q Consensus 534 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (842)
..+ ..+.-|+..++.++++...++++-.+.. .+.+|= -.|-.+|+++..-|.---.+|..+|-+-+.-|
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~ 369 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEI 369 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456 7888888888888888888877766554 222221 22556666666666666678888888888888
Q ss_pred HHHHHhhhhhccCCcchhhhhhhcccccccccchhhhhhhhhccCCCCccCCCChhhhhHHHHHHHHHHhhh-hHhhhcc
Q 003179 603 EDLLCSMKSFAADGESSTAKKLVSISEIGSSLFSTLETNFLMAMDGDKSFSNNDSLVREQCKVFCEKLKSTI-SALILSE 681 (842)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 681 (842)
.+.+-.+...+-|-.+..-++...+.+++.-+= .....-+ +++.=....++++-..|-+-| ..+.-.+
T Consensus 370 ~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~----------~~pe~~~-~~~~d~k~~V~~~l~el~~ei~~~~~~~~ 438 (581)
T KOG0995|consen 370 EDFFKELEKKFIDLNSLIRRIKLGIAENSKNLE----------RNPERAA-TNGVDLKSYVKPLLKELLDEISEELHEAE 438 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----------cCCccCc-cccccchhHhHHHHHHHHHHHHHHHHHHH
Confidence 888888877777766666666665454443311 1111111 233333334444333222222 2221111
Q ss_pred cCCCCcccCCCCCCCCCCccchhhHHHHhhhhhhhhhHhhhhchhhhhhhhhhhHHhh----HHHHHHHHHHHHHHHHHh
Q 003179 682 KAPIDNKQGKNSPCSCNNKEEESTCWKEKLSSELNTIKEKYHGLEKDLDLNNKFLETS----KEMYDSLEREFRLLQEER 757 (842)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 757 (842)
..-+--|+.. .+.+..-+-+.+.|..|..+...++..+...++--++. +.-.+.||+++..| .
T Consensus 439 ~~~~tLq~~~----------~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l---~ 505 (581)
T KOG0995|consen 439 NELETLQEHF----------SNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNL---K 505 (581)
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 1000000000 12233334455555666666655555555444433333 33334555554443 3
Q ss_pred HHHHHHHhhhccccccchhhHHhHhhhhhHHHHHH-HhHHHHHHHHHHHHHhhccceeeehhhhHHHHHhhhh
Q 003179 758 DSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKK-KNLEEEIKQFSVAFACRQKSLVSFHSDLKSKIEKLRA 829 (842)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (842)
..+...++++-+.+..+-..=+.++.+.+.+++.. +.|..=|.+++ -|+--.-+.||++++
T Consensus 506 l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~-----------~~k~~iqs~le~~k~ 567 (581)
T KOG0995|consen 506 LVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQIS-----------DFKVSIQSSLENLKA 567 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 45556666655555544444455555555555555 45544444444 455556666666665
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.72 E-value=3.8 Score=53.37 Aligned_cols=69 Identities=22% Similarity=0.343 Sum_probs=49.8
Q ss_pred ch-hhHHHHHHHHHHHHHHHHHHHHhhHHHH-HhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHH
Q 003179 535 NY-RDVQKLKRQLENVTEEKNEFQRKYSEEK-ILNARLTGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLL 606 (842)
Q Consensus 535 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (842)
.+ .+++.++.++...++...+.+.+|...+ .|.......+..++.+...+++ +..+......+.|..+.
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~l~ 426 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIRE---EKAERREQIEEEYQALE 426 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45 6889999999999999999999999988 7788888888888887554433 33333444444444433
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.58 E-value=13 Score=48.75 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=46.8
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeecc-CCCCccccccCCCC----------CCChHHhHHHHHH
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQ-TSSGKTFTMNGSAD----------NPGVISLGVKDIF 113 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQ-TGSGKTyTM~Gs~~----------~~GIIPRal~dLF 113 (842)
.=.||.-|=|.++---||+-. + -+|--|||++|.- .|-|=-|-+.+.+- +.++.+....+++
T Consensus 55 rksF~~yYLP~~nSyIIYEY~-R------~~G~~~~vvl~~~s~g~~V~YRFId~~y~~e~fi~~~~~~~~~~~~~~e~~ 127 (1201)
T PF12128_consen 55 RKSFDDYYLPYSNSYIIYEYQ-R------EDGQLCCVVLSRKSDGRGVQYRFIDAPYQRELFIDENNGDLVQALSMWELI 127 (1201)
T ss_pred hhhHHHHcCCCCCceEEEeee-c------cCCceeEEEEeecCCCCceeeeeccCccchhhcccccCccccccccHHHHH
Confidence 346777777777767777643 2 1576678888744 23344588877542 1346778888888
Q ss_pred HHHHhccccceEEEEe
Q 003179 114 DAIQMMSNREFLVRVS 129 (842)
Q Consensus 114 ~~I~~~~~~ef~V~VS 129 (842)
..+... +..++=.++
T Consensus 128 r~~~~~-gv~~S~~i~ 142 (1201)
T PF12128_consen 128 RELRRK-GVQVSRKIT 142 (1201)
T ss_pred HHHHhC-CCeeecCcC
Confidence 877653 444444444
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=94.21 E-value=3.9 Score=51.03 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=11.8
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
.+-+|++|||||..+
T Consensus 26 ~~i~G~Ng~GKStil 40 (880)
T PRK02224 26 TVIHGVNGSGKSSLL 40 (880)
T ss_pred EEEECCCCCCHHHHH
Confidence 345899999998754
No 37
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.99 E-value=0.033 Score=58.39 Aligned_cols=50 Identities=32% Similarity=0.527 Sum_probs=30.9
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..|+||.-+.++ .++..|..+ ..+.+.--..+| .+|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~g~-~N~~a~~~~-~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVVGE-SNELAYAAA-KAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS--TT-TTHHHHHHH-HHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCCccccCCcCC-cHHHHHHHH-HHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 469999876554 566677543 334433112234 47889999999999764
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=93.04 E-value=0.082 Score=55.57 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=33.3
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
..++||..+... +..-+ ..+...+-.++|..++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 468999988765 22222 2223334457888899999999999998763
No 39
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.99 E-value=0.25 Score=58.15 Aligned_cols=91 Identities=19% Similarity=0.376 Sum_probs=58.8
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccC---CCCCCChHH----hHHHHHHHHH
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG---SADNPGVIS----LGVKDIFDAI 116 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G---s~~~~GIIP----Ral~dLF~~I 116 (842)
..|....-|.|.-+|..- ...+|+.+-.|.-.-++ .|.|||||||||-. ...-|-+|- -...+||...
T Consensus 3 ~~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 346666778888888643 34567776666655444 59999999999964 111222221 2345566665
Q ss_pred Hh-ccccceEEEEeeeeeeccccc
Q 003179 117 QM-MSNREFLVRVSYMEIYNEEIN 139 (842)
Q Consensus 117 ~~-~~~~ef~V~VSylEIYNE~V~ 139 (842)
.. .++..+...|||+..|.-+-|
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHhCcCcceEEEeeeccccCcccc
Confidence 54 467777788999988876543
No 40
>PRK06620 hypothetical protein; Validated
Probab=92.61 E-value=0.084 Score=55.28 Aligned_cols=50 Identities=28% Similarity=0.418 Sum_probs=34.8
Q ss_pred CcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC---eeEEeeccCCCCcccccc
Q 003179 43 GTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFN---GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 43 ~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN---~TIfAYGQTGSGKTyTM~ 96 (842)
...|+||..+... ++...|..+.. +.+. -|+| ..++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg~-~N~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSS-SNDQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEecc-cHHHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 4578999877665 45667776532 2221 1444 358999999999999986
No 41
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.51 E-value=8.5 Score=42.09 Aligned_cols=84 Identities=18% Similarity=0.274 Sum_probs=58.8
Q ss_pred HHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhH
Q 003179 708 KEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNT 787 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (842)
...|+..+..+..........+..-+.-+...+..+.+|..++.-|+..+++|-..+.+--+.+..-...-...+.++..
T Consensus 190 e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~ 269 (312)
T PF00038_consen 190 EEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEE 269 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccch
Confidence 34566667777666666666777777777778888888888888888888888888877766666444445555555555
Q ss_pred HHHH
Q 003179 788 EVEK 791 (842)
Q Consensus 788 ~~~~ 791 (842)
|+..
T Consensus 270 el~~ 273 (312)
T PF00038_consen 270 ELAE 273 (312)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5543
No 42
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.51 E-value=4.2 Score=44.60 Aligned_cols=76 Identities=26% Similarity=0.402 Sum_probs=51.9
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccc-hh-----------------hHHhHhhhhhHHH
Q 003179 728 DLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMV-TD-----------------QKENVLKDYNTEV 789 (842)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~ 789 (842)
.+..-.-+|..+|...+.||-|+..+|.|-....+..+.+.-.|... |. .=|++-..||.||
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkev 175 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEV 175 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHH
Confidence 33344455566666777888888888888877777666444322211 11 2256667799999
Q ss_pred HHHHhHHHHHHHHH
Q 003179 790 EKKKNLEEEIKQFS 803 (842)
Q Consensus 790 ~~~~~~~~~~~~~~ 803 (842)
+-||.||.|+|.+-
T Consensus 176 eerkrle~e~k~lq 189 (307)
T PF10481_consen 176 EERKRLEAEVKALQ 189 (307)
T ss_pred HHHhhHHHHHHHHh
Confidence 99999999999774
No 43
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.65 E-value=4.9 Score=44.88 Aligned_cols=109 Identities=26% Similarity=0.313 Sum_probs=79.9
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHH-------HHHHHHHhHHHHHHHhhhccccccchhhHHhHh
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLERE-------FRLLQEERDSLLNKVSESSQTLTMVTDQKENVL 782 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (842)
.|..+-.+..++.+.|-.+| -++|-+++.....|..| +....+|-.+|+..+..--+++...+.++|++.
T Consensus 185 ~L~~et~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~ 261 (306)
T PF04849_consen 185 QLKTETDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQ 261 (306)
T ss_pred HhhHHHhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444445555554443 34455555555655544 455677888999999999999999999999999
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHhhccceeeehhhhH
Q 003179 783 KDYNTEVEKKKNLEEEIKQFSVAFACRQKSLVSFHSDLK 821 (842)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (842)
..|.........|..|++-|-..||--.+-|..-..++|
T Consensus 262 q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 262 QHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887766665555554
No 44
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.52 E-value=50 Score=42.16 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=11.8
Q ss_pred EeeccCCCCccccc
Q 003179 82 FAYGQTSSGKTFTM 95 (842)
Q Consensus 82 fAYGQTGSGKTyTM 95 (842)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 44899999999866
No 45
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.52 E-value=23 Score=42.60 Aligned_cols=109 Identities=21% Similarity=0.276 Sum_probs=68.1
Q ss_pred cCCCCCCCCCCccchhhHHHHhhhhhhhhhHhhhhchhhh--------------hhhhhhhHHhhHHHHHHHHHHHHHHH
Q 003179 689 QGKNSPCSCNNKEEESTCWKEKLSSELNTIKEKYHGLEKD--------------LDLNNKFLETSKEMYDSLEREFRLLQ 754 (842)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (842)
+..+ +|.-+|+. .|+-.|...++.|++..|.-+.+ ....+|.|.....+...++.++.+.|
T Consensus 406 e~~~-~~~~d~k~----~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k 480 (581)
T KOG0995|consen 406 ERAA-TNGVDLKS----YVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKK 480 (581)
T ss_pred ccCc-cccccchh----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 68888874 46666666666676666554442 23445667777778888889999999
Q ss_pred HHhHHHHHHH-------hhhccccccchh----hHHhHhhhhhHHHHHHHh-HHHHHHHH
Q 003179 755 EERDSLLNKV-------SESSQTLTMVTD----QKENVLKDYNTEVEKKKN-LEEEIKQF 802 (842)
Q Consensus 755 ~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~ 802 (842)
+|...+..+. -+..+.+.++.+ +=++.++..+.|.+|+.. .++++..+
T Consensus 481 ~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki 540 (581)
T KOG0995|consen 481 EEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKI 540 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877665543 345555555544 335566666777777653 44555444
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.51 E-value=54 Score=42.90 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=15.7
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+-.+-.|+++- .||.||||+-.+
T Consensus 19 ~i~f~~~~t~I---vGPNGSGKSNI~ 41 (1163)
T COG1196 19 EINFSPGFTAI---VGPNGSGKSNIV 41 (1163)
T ss_pred eeecCCCCeEE---ECCCCCchHHHH
Confidence 33444566653 499999998765
No 47
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.41 E-value=0.16 Score=56.27 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 66 TKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 66 ~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..|++..+++--++.|+.-|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4678889999999999999999999999974
No 48
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=90.05 E-value=0.21 Score=57.64 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=32.4
Q ss_pred CcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 43 GTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 43 ~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
...|+||.-... ..+...|..+ ..+.+.--..|| .++-||++|+||||.+.
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCcccccccC-CCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 467899884433 3455566543 333333212344 47889999999999985
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.50 E-value=17 Score=46.09 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=47.6
Q ss_pred hhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccch-------hhHHhHhhhh
Q 003179 713 SELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVT-------DQKENVLKDY 785 (842)
Q Consensus 713 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 785 (842)
.++..+.+.+..+..++..-.+.+.....+...|+.++..+..+...+...+.+....+.-.. .+.+.+...+
T Consensus 796 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (1179)
T TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444444444444444444444444555555555555555555555444443332222111 2222333333
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhhccceee
Q 003179 786 NTEVEKKKNLEEEIKQFSVAFACRQKSLVS 815 (842)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (842)
.....+...++.+++..-..+..-+..+..
T Consensus 876 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 905 (1179)
T TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRE 905 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666665555544444433
No 50
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.40 E-value=0.38 Score=58.59 Aligned_cols=88 Identities=24% Similarity=0.466 Sum_probs=55.4
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNRE 123 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~e 123 (842)
..+.|+.+......+..-+... .+-+..++++++.. +|++|++.+.....|++-+....++..........
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (670)
T KOG0239|consen 26 KRFELARVYSPSVGQPSLFSDV-QPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTSN 96 (670)
T ss_pred cccCccccccccccccccCCcc-ccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCch
Confidence 4566776665533322222222 23445556666654 89999999998888888877777765533322221
Q ss_pred eEEEEeeeeeecccccccccccc
Q 003179 124 FLVRVSYMEIYNEEINDLLAVEN 146 (842)
Q Consensus 124 f~V~VSylEIYNE~V~DLL~~~~ 146 (842)
.++.|++.+.|++..-.
T Consensus 97 ------~~~~~~~~~~~~~~~~q 113 (670)
T KOG0239|consen 97 ------VVEAYNERLRDLLSELQ 113 (670)
T ss_pred ------hHHHHHHHHhhhccccc
Confidence 67889999999987433
No 51
>PRK09087 hypothetical protein; Validated
Probab=89.38 E-value=0.27 Score=51.93 Aligned_cols=47 Identities=23% Similarity=0.212 Sum_probs=32.6
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..|+||.-+..+ ++..+|..+ .....-.+..++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~-~N~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTE-SNRAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecC-chHHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHH
Confidence 468999987654 345577743 22222235568999999999999986
No 52
>PRK12377 putative replication protein; Provisional
Probab=89.34 E-value=0.38 Score=51.82 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=36.5
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
...+||.-......|..++.. +..++..+..+. ..++-||++|+||||.+.+
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred ccCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 445777655444566666654 466777766654 4688899999999999864
No 53
>PRK05642 DNA replication initiation factor; Validated
Probab=89.13 E-value=0.32 Score=51.40 Aligned_cols=46 Identities=15% Similarity=0.452 Sum_probs=29.2
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhc---CC-CeeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVE---GF-NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~---Gy-N~TIfAYGQTGSGKTyTM~ 96 (842)
..|+||.-+... +...+ ..+....+ ++ ...++-||++|+||||-+.
T Consensus 14 ~~~tfdnF~~~~--~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPGA--NAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcCC--hHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 468999877442 33333 33333332 22 2468999999999999875
No 54
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.07 E-value=0.34 Score=51.18 Aligned_cols=48 Identities=10% Similarity=0.395 Sum_probs=31.8
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
..|+||.-+.. .+..++..+. .+.. ..-...++-||++|+||||.+.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~-~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQ-NALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHHHH-HHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 45788876654 5566665442 2221 22234789999999999999863
No 55
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.92 E-value=2.8 Score=41.86 Aligned_cols=118 Identities=21% Similarity=0.299 Sum_probs=81.4
Q ss_pred hhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHH
Q 003179 712 SSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEK 791 (842)
Q Consensus 712 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (842)
.++-++|+-+..+||.+|.....-++....-.++--+++..|+++-.-+-..+......|..+...|+++.+.|.....|
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777788888877777766666666666677777777777777777778888888999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhhccceeeehhhhHHHHHhhhh
Q 003179 792 KKNLEEEIKQFSVAFACRQKSLVSFHSDLKSKIEKLRA 829 (842)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (842)
..+|+.-.--|-.....-..--+-..-.+++.|+.|.+
T Consensus 96 v~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ 133 (140)
T PF10473_consen 96 VSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQK 133 (140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888655444433322222233344455555555443
No 56
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.72 E-value=0.25 Score=59.44 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=34.9
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
..|+||..+-.. ++..+|.. +..+++..-.+||. ||-||.+|+||||.+.+
T Consensus 283 ~~~TFDnFvvG~-sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGA-SNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCC-ccHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 469999766544 34455533 34455543356776 89999999999999864
No 57
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.71 E-value=0.3 Score=56.26 Aligned_cols=52 Identities=25% Similarity=0.403 Sum_probs=33.6
Q ss_pred CCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 42 SGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 42 ~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
-...|+||.-.... ++.-.|..+ ..+...-.+.---+|-||++|+||||-|.
T Consensus 80 l~~~ytFdnFv~g~-~N~~A~aa~--~~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 80 LNPKYTFDNFVVGP-SNRLAYAAA--KAVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCCchhheeeCC-chHHHHHHH--HHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 34679999866554 555555433 22333223334458999999999999985
No 58
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=88.48 E-value=36 Score=43.30 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
+..-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 5577899999999876
No 59
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.35 E-value=17 Score=42.86 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=28.3
Q ss_pred hhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 003179 715 LNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT 772 (842)
Q Consensus 715 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (842)
++.+..++..++..+...+..++....+...|+.++.-|..+...+..++.+-.+++.
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555544444444443333333
No 60
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.35 E-value=0.35 Score=56.05 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=34.1
Q ss_pred CcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 43 GTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 43 ~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
...|+||.-+.. .++...|..+ ..+... -..||. +|-||++|+||||.|.
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCcccccccC-CchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 467999987754 3556666644 333332 123675 9999999999999875
No 61
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.25 E-value=23 Score=46.13 Aligned_cols=61 Identities=30% Similarity=0.438 Sum_probs=33.4
Q ss_pred hhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccc
Q 003179 711 LSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTL 771 (842)
Q Consensus 711 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (842)
+..+++++......++..+......++..+.....++.++..++.++..+...+.+-...+
T Consensus 840 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~ 900 (1163)
T COG1196 840 LEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900 (1163)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555666666666666666655555554444333
No 62
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.10 E-value=4.2 Score=45.51 Aligned_cols=129 Identities=23% Similarity=0.299 Sum_probs=79.4
Q ss_pred HHHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHH------------------HHHHHhhhc
Q 003179 707 WKEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDS------------------LLNKVSESS 768 (842)
Q Consensus 707 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 768 (842)
+++-|...+..++..+..|.+.++.-+..+...+++|+.|..|+..|+.-.+- +...+....
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788888999999999999999999999999999999998888754443 222223333
Q ss_pred cccccchhhHHhHhhhhhHHHHHHHhHHHHHHHHHHHHHhhccceeeehhhhHHHHHhhhhcCCccc
Q 003179 769 QTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQFSVAFACRQKSLVSFHSDLKSKIEKLRAQNPVSV 835 (842)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (842)
+++.-+..+...+-.+++.-..++.++.++|...-.-.-..++-=.+=-+.+|.++..|-..+-+.+
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~~~ 291 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWKI 291 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCee
Confidence 3333333344444444555555566666666554333322222222223566776666666654443
No 63
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.08 E-value=0.53 Score=50.63 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=35.0
Q ss_pred CcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 43 GTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 43 ~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
....+||.-......|..++..+ ...++.+..|+ ..++-||++|+||||.+.+
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred ccCCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 34567887544444566666554 44555554443 3688999999999998764
No 64
>PRK06526 transposase; Provisional
Probab=87.80 E-value=0.24 Score=53.37 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=28.2
Q ss_pred ecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 48 FDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 48 FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
||.-+.+..++..+..-...+.++ .|.| |+.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 343344555555555443333333 3444 79999999999999874
No 65
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.79 E-value=0.4 Score=54.49 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=31.8
Q ss_pred CcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 43 GTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 43 ~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
...|+||.-... ..+...|..+ ..+...--..+| .++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~g-~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVVG-KSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCcccccccC-CcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 467999984432 3455566443 334333111234 47889999999999875
No 66
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.46 E-value=29 Score=43.03 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=54.2
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHHhh
Q 003179 534 ENY-RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLCSM 609 (842)
Q Consensus 534 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (842)
..+ .|+..|+.+|..++|.+..|+....+.-...+.-..+++.|--...+|++-...|=.|++-=-.+=-|+|+.|
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaL 624 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSAL 624 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455 8999999999999999999998875544433333456777777777888888888777765544444555444
No 67
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.15 E-value=0.76 Score=54.07 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
...+..++..-+|.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3456777888999999999999999999974
No 68
>PRK08116 hypothetical protein; Validated
Probab=87.13 E-value=0.42 Score=51.83 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=35.1
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhc--CCCeeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVE--GFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~--GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..++||.-. .+..+...|.. +...++.+.. +.|..++-||++|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 457888644 34455556654 4666666653 345569999999999999876
No 69
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=87.12 E-value=35 Score=43.57 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=20.2
Q ss_pred hhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 003179 716 NTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVS 765 (842)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (842)
..+......++.++..-...++..+..++.++.++..|+.+...+...+.
T Consensus 402 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 451 (1164)
T TIGR02169 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444444433333
No 70
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.59 E-value=0.62 Score=51.51 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCcccccc
Q 003179 58 NARVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 58 QeeVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.++-++.+.. .+..++ .+....++-||++|+|||+++.
T Consensus 20 Re~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 20 RDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred cHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 4444444433 333444 3556789999999999999753
No 71
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=86.51 E-value=0.48 Score=46.00 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=20.5
Q ss_pred HHHHHhcC-CCeeEEeeccCCCCccccccC
Q 003179 69 IIHAAVEG-FNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 69 LV~svL~G-yN~TIfAYGQTGSGKTyTM~G 97 (842)
+++.+-.+ .+..++..|+||||||++|.+
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 34444444 456667778999999999984
No 72
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=86.29 E-value=0.68 Score=51.80 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCcccccc
Q 003179 57 SNARVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 57 sQeeVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.-++-++.+... +..++ .+....++-||++|+|||+++.
T Consensus 34 ~Re~e~~~l~~~-l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 34 HREEQIEELAFA-LRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CHHHHHHHHHHH-HHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 344445554333 33344 4455678999999999999753
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=86.23 E-value=0.62 Score=42.53 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=19.4
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+...+.......++.+|++|+|||+.+.
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 3334334345578899999999998653
No 74
>PRK11637 AmiB activator; Provisional
Probab=86.15 E-value=73 Score=36.91 Aligned_cols=42 Identities=7% Similarity=0.085 Sum_probs=30.6
Q ss_pred hhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHHhhhhh
Q 003179 571 TGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLCSMKSF 612 (842)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (842)
..+|.++++++..+..-=..+=+.+...++.|+..+-.|..-
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 446666777776666666677778888888888888777653
No 75
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.74 E-value=0.67 Score=47.54 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=31.7
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..|+||....+ .+..++..+- .++ ..+....|+-||++|+||||...
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~-~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALR-QLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHH-HHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 34778876632 4455665442 222 25667789999999999999874
No 76
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.22 E-value=0.56 Score=54.55 Aligned_cols=49 Identities=20% Similarity=0.431 Sum_probs=32.0
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|+||.-+.+. ++...|.. +..++..-=..|| .+|-||++|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 58999866554 45566643 3444332111244 48999999999999885
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.96 E-value=28 Score=41.95 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=26.0
Q ss_pred hhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 003179 712 SSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSES 767 (842)
Q Consensus 712 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (842)
..+|....+..++.+.+...-..-|-+.....+..-.+++--+-|.+.|-.++++.
T Consensus 289 keqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~ 344 (546)
T PF07888_consen 289 KEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADA 344 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33444444444444444444444444444444444455555555555554444443
No 78
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.56 E-value=1.5e+02 Score=39.00 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 003179 380 KYELEREKLQLELEEERRSRKERDQCVREQQMRLQNHNSLVTSSGGDGS 428 (842)
Q Consensus 380 ~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~v~~s~~~~~ 428 (842)
..-...++.+.-+++....+.+.++.+++++..|+.++..+...+.+..
T Consensus 1444 ~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~ 1492 (1758)
T KOG0994|consen 1444 SASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPD 1492 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 3333445556667777778888899999999999998888766554443
No 79
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.23 E-value=5.6 Score=40.47 Aligned_cols=89 Identities=27% Similarity=0.381 Sum_probs=76.3
Q ss_pred hhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHH
Q 003179 713 SELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKK 792 (842)
Q Consensus 713 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (842)
.-|+..+||.+.+..++..-.+.|.+..+....+..++..++.+|+.+.....+-.+....+. .-.++.|+..-+...
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~--~P~ll~Dy~~~~~~~ 154 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLG--VPALLRDYDKTKEEV 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHH
Confidence 356688899999999999999999999999999999999999999999999888777766553 367888999888888
Q ss_pred HhHHHHHHHHH
Q 003179 793 KNLEEEIKQFS 803 (842)
Q Consensus 793 ~~~~~~~~~~~ 803 (842)
.+|+.+|+.+=
T Consensus 155 ~~l~~~i~~l~ 165 (177)
T PF13870_consen 155 EELRKEIKELE 165 (177)
T ss_pred HHHHHHHHHHH
Confidence 88888887653
No 80
>PRK08181 transposase; Validated
Probab=84.11 E-value=0.94 Score=49.44 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=28.0
Q ss_pred eecEeeCCCCChHHHHHHHHH-HHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 47 AFDHVFEETCSNARVYELLTK-DIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~-pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
.||.-+.+..+...+..-... ..++ .|.| |+-||++|+||||-+.+
T Consensus 79 ~fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 79 SFDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred hCCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHH
Confidence 344445555555544443221 2322 4555 89999999999999875
No 81
>PRK08939 primosomal protein DnaI; Reviewed
Probab=83.88 E-value=0.62 Score=51.64 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=33.6
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHhcC-CCeeEEeeccCCCCccccccC
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEG-FNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL~G-yN~TIfAYGQTGSGKTyTM~G 97 (842)
.+||.+-..+..+..++..+ ...++....| ..-.++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 45665533333566677643 5666665543 234699999999999999865
No 82
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.81 E-value=5.4 Score=47.65 Aligned_cols=63 Identities=27% Similarity=0.427 Sum_probs=33.8
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT 772 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (842)
.|..+...+.+....|+.+|....+-.+..+..+..+....+.|+.|+++|.....++.+++.
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~ 223 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIR 223 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555545555555555555556666666666666666555443
No 83
>PRK08727 hypothetical protein; Validated
Probab=83.67 E-value=0.76 Score=48.54 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=27.4
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC-eeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFN-GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN-~TIfAYGQTGSGKTyTM~ 96 (842)
..|+||.-+.+. ++ ....+ .. +..|.. -.|+-||++|+||||.+.
T Consensus 14 ~~~~f~~f~~~~-~n--~~~~~-~~----~~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIAAP-DG--LLAQL-QA----LAAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccCCc-HH--HHHHH-HH----HHhccCCCeEEEECCCCCCHHHHHH
Confidence 457888866443 22 22221 12 222332 359999999999999875
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.54 E-value=1.1 Score=46.38 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=30.6
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..|+||..+... ...++.. .+.++.. .+.+..++-||++|+||||.+.
T Consensus 13 ~~~~~d~f~~~~--~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccCC--cHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 458899987432 2334332 2333331 2345679999999999999864
No 85
>PRK06835 DNA replication protein DnaC; Validated
Probab=83.42 E-value=0.59 Score=52.34 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 66 TKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 66 ~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
+...++.+-.+. ..++-||++|+||||.+.+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 355777766554 5699999999999998764
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.82 E-value=1.2e+02 Score=36.69 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003179 368 EQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNHNSLV 420 (842)
Q Consensus 368 e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~v 420 (842)
...+..++..+...+.....+..++.+.....++-...+.+++.+.++++..+
T Consensus 104 ~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~l 156 (569)
T PRK04778 104 KHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSL 156 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555554444444444555555555554333
No 87
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=81.62 E-value=1.3 Score=50.49 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=19.0
Q ss_pred HHHHhcCC-CeeEEeeccCCCCccccc
Q 003179 70 IHAAVEGF-NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 70 V~svL~Gy-N~TIfAYGQTGSGKTyTM 95 (842)
+..++.|. ...++.||.||||||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 44445444 344999999999999875
No 88
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.50 E-value=0.63 Score=41.99 Aligned_cols=17 Identities=35% Similarity=0.280 Sum_probs=14.9
Q ss_pred EEeeccCCCCccccccC
Q 003179 81 VFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~G 97 (842)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57889999999999864
No 89
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.88 E-value=76 Score=38.32 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.9
Q ss_pred hhHHhHhhhhhHHHHHHHhHHHHHHHH
Q 003179 776 DQKENVLKDYNTEVEKKKNLEEEIKQF 802 (842)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (842)
+|=|++|.-|..|+.-+-.|+.|+.|.
T Consensus 229 kQlEEALeTlq~EReqk~alkkEL~q~ 255 (772)
T KOG0999|consen 229 KQLEEALETLQQEREQKNALKKELSQY 255 (772)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 378999999999999999999998775
No 90
>PRK03918 chromosome segregation protein; Provisional
Probab=80.67 E-value=90 Score=39.09 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=11.5
Q ss_pred EeeccCCCCccccc
Q 003179 82 FAYGQTSSGKTFTM 95 (842)
Q Consensus 82 fAYGQTGSGKTyTM 95 (842)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 47899999998653
No 91
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.04 E-value=2e+02 Score=37.45 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=21.6
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003179 534 ENY-RDVQKLKRQLENVTEEKNEFQRKYSEEK 564 (842)
Q Consensus 534 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (842)
.++ .++..|+..+...+.+..+++..+.+-.
T Consensus 657 ~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e 688 (1074)
T KOG0250|consen 657 FSFDDEIEDLEREASRLQKEILELENQRREAE 688 (1074)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 7788888877777777777766665543
No 92
>PF13245 AAA_19: Part of AAA domain
Probab=79.52 E-value=1.1 Score=39.76 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=18.0
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
|..++. -+..+...|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 33344558999999999975
No 93
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=79.39 E-value=0.81 Score=41.09 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999985
No 94
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=79.03 E-value=2.2e+02 Score=37.44 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhc
Q 003179 316 TKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKLQG 361 (842)
Q Consensus 316 TLsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr~~L~~ 361 (842)
+..|=+|-.||+.|+...+..- .......++..+.+.|.-|..
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~ga---y~s~f~~me~kl~~ir~il~~ 1219 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLGA---YASRFLDMEEKLEEIRAILSA 1219 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCchh---hHhHHHHHHHHHHHHHHHhcC
Confidence 4456678888888887766552 233345566666666666643
No 95
>PRK06921 hypothetical protein; Provisional
Probab=79.02 E-value=1.6 Score=47.42 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=22.2
Q ss_pred HHHHHHHHhc---CCCeeEEeeccCCCCccccccC
Q 003179 66 TKDIIHAAVE---GFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 66 ~~pLV~svL~---GyN~TIfAYGQTGSGKTyTM~G 97 (842)
+...++.+-. +....++-||++|+||||.+.+
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3455555432 2345689999999999998763
No 96
>PRK10436 hypothetical protein; Provisional
Probab=78.91 E-value=1.1 Score=52.63 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=23.7
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4556667778999999999999999986
No 97
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=78.83 E-value=1.1 Score=53.67 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=24.3
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45666777889999999999999999853
No 98
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=78.78 E-value=1.9 Score=46.59 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=33.9
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
++|.|..+-.....+..+|... ..++..+-+|. .++-||++|+||||-..+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~--nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDL-ASLVEFFERGE--NLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHHH-HHHHHHhccCC--cEEEECCCCCcHHHHHHH
Confidence 5555544444445677778765 45555555443 457899999999998764
No 99
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=78.44 E-value=1.2 Score=42.90 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=20.0
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
++..+.+|.| ++..|+||||||....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4455566766 7888999999999865
No 100
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=78.13 E-value=1.3 Score=52.20 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=23.6
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556677778889999999999999986
No 101
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=77.84 E-value=0.79 Score=42.66 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=13.4
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
..+++.+|++|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3578999999999998764
No 102
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=77.07 E-value=7 Score=43.93 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=28.9
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHH-Hhc--CC--CeeEEeeccCCCCcccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHA-AVE--GF--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~s-vL~--Gy--N~TIfAYGQTGSGKTyTM~ 96 (842)
.+.||.|.+-+..-+.+.+.+..|+... .+. |. ...|+-||++|+|||++.-
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 3555655554433344444444343322 111 21 3458999999999998763
No 103
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.05 E-value=20 Score=40.19 Aligned_cols=49 Identities=31% Similarity=0.453 Sum_probs=41.9
Q ss_pred HHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHH
Q 003179 708 KEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEE 756 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (842)
++-|...+..++..|..|.+.+..-+..+....++++.|+.++..|+.-
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888888889888888899999999999999998888763
No 104
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=76.88 E-value=2.1 Score=49.86 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=33.0
Q ss_pred CcceeecEeeCCCCChHHHHHHHHHHHHHHH--hcC--CCeeEEeeccCCCCcccccc
Q 003179 43 GTSYAFDHVFEETCSNARVYELLTKDIIHAA--VEG--FNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 43 ~~sF~FD~VF~~~asQeeVYe~v~~pLV~sv--L~G--yN~TIfAYGQTGSGKTyTM~ 96 (842)
...|+||.-+.+. ++...|.. +..+.... ..| ||. +|-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~g~-~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLVTP-ENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CccccccceeeCC-cHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 4679999876543 55555543 34444322 123 454 6789999999999875
No 105
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.81 E-value=65 Score=38.93 Aligned_cols=102 Identities=22% Similarity=0.247 Sum_probs=61.0
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchh---hHHhHhhhhhHHHHHH-----HhHHHHH
Q 003179 728 DLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTD---QKENVLKDYNTEVEKK-----KNLEEEI 799 (842)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~ 799 (842)
-+..-+-.+...|.|+..||.|...||.|++-|...|......++--+. +-+|-.++|-.++.=+ .+++++.
T Consensus 149 ~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~ 228 (546)
T KOG0977|consen 149 RLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEER 228 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3334444556678899999999999999999998888766654442221 2223333333333322 3455555
Q ss_pred HHHHHHHHhhccceeeehhhhHHHHHhhhhcC
Q 003179 800 KQFSVAFACRQKSLVSFHSDLKSKIEKLRAQN 831 (842)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (842)
+.+..+--..-+ --|+.++..-|..+||+.
T Consensus 229 ~~~~rd~t~~~r--~~F~~eL~~Ai~eiRaqy 258 (546)
T KOG0977|consen 229 RKARRDTTADNR--EYFKNELALAIREIRAQY 258 (546)
T ss_pred HHHhhcccccch--HHHHHHHHHHHHHHHHHH
Confidence 555555411111 237888888888888875
No 106
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=76.74 E-value=85 Score=39.23 Aligned_cols=32 Identities=47% Similarity=0.564 Sum_probs=23.6
Q ss_pred HHHHHhHHHHHHH-HHHHHHhhccceeeehhhhHHHHHhhhh
Q 003179 789 VEKKKNLEEEIKQ-FSVAFACRQKSLVSFHSDLKSKIEKLRA 829 (842)
Q Consensus 789 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (842)
.++-+.|++||++ |..|. + -+++|.+||+|+.
T Consensus 648 k~KIe~L~~eIkkkIe~av--------~-ss~LK~k~E~Lk~ 680 (762)
T PLN03229 648 QEKIESLNEEINKKIERVI--------R-SSDLKSKIELLKL 680 (762)
T ss_pred HHHHHHHHHHHHHHHHHHh--------c-chhHHHHHHHHHH
Confidence 6788899999987 33332 2 4789999999875
No 107
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=76.52 E-value=1.5 Score=49.13 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+.+..++.--.+.|+-.|+||||||.||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 44555554446789999999999999985
No 108
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=76.42 E-value=1.8 Score=49.76 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=34.4
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHH-HHhc--C--CCeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIH-AAVE--G--FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~--G--yN~TIfAYGQTGSGKTyTM 95 (842)
..++|+.|-+.+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3467777777665455566655555543 2333 2 2456899999999999876
No 109
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=76.30 E-value=4.9 Score=43.31 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=33.4
Q ss_pred EcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccCCccc
Q 003179 168 IVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSERI 239 (842)
Q Consensus 168 ~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAGSER~ 239 (842)
.+.+++++...+...... ..+. ...-|.-++++.|..... -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~------------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV------------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC------------CceEEEeCCCcccc
Confidence 346788888887765422 2111 123456677888865443 24999999999643
No 110
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.22 E-value=1.6e+02 Score=37.44 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=29.0
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHHHHhhHHHH-Hhhh
Q 003179 534 ENY-RDVQKLKRQLENVTEEKNEFQRKYSEEK-ILNA 568 (842)
Q Consensus 534 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 568 (842)
+.. .|+..++.+++..+++.+..-.+|..++ .+.-
T Consensus 336 ~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~ 372 (980)
T KOG0980|consen 336 EQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEG 372 (980)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455 9999999999999999999988888776 4433
No 111
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=76.18 E-value=1.4 Score=47.10 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=16.0
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
.+.|+..|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5667777999999999974
No 112
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=75.86 E-value=1.2 Score=45.94 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=16.6
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
.+.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999985
No 113
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.78 E-value=76 Score=40.98 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=42.7
Q ss_pred hhhhHhhhhchhhhhhhhhhh--------HHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhh
Q 003179 715 LNTIKEKYHGLEKDLDLNNKF--------LETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYN 786 (842)
Q Consensus 715 l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (842)
...++..+..++|.+..-+.+ ++.....+..|+++++-|.+...+|-++.-+-.+++..+-..++.+..+..
T Consensus 367 i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~ 446 (1074)
T KOG0250|consen 367 IRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEIL 446 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334455555555544333322 333444556666666666666666666665555555544444444444444
Q ss_pred HHHHHHHhHHHHHH
Q 003179 787 TEVEKKKNLEEEIK 800 (842)
Q Consensus 787 ~~~~~~~~~~~~~~ 800 (842)
+=..+..+...+|+
T Consensus 447 ~l~k~i~~~~~~l~ 460 (1074)
T KOG0250|consen 447 QLRKKIENISEELK 460 (1074)
T ss_pred HHHHHHHHHHHHHH
Confidence 44334344444444
No 114
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=75.74 E-value=2.4 Score=47.50 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=27.8
Q ss_pred eCCCCChHHHHHHHHHHHHHHHhcC-CCeeEEeeccCCCCcccccc
Q 003179 52 FEETCSNARVYELLTKDIIHAAVEG-FNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 52 F~~~asQeeVYe~v~~pLV~svL~G-yN~TIfAYGQTGSGKTyTM~ 96 (842)
|-|.+--+-+++..+..++...+.| .---.+-||+.|+|||.|..
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3333333444444444555555544 44457889999999999964
No 115
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.59 E-value=75 Score=40.71 Aligned_cols=66 Identities=29% Similarity=0.342 Sum_probs=46.1
Q ss_pred cchhhHHHH--hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 003179 701 EEESTCWKE--KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSE 766 (842)
Q Consensus 701 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (842)
+.|...-+| -+.++|..+-|+|..|+..+....-.++++-+.+..+-++++.|.+.|..|..+=.+
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~ 478 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKK 478 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455 556667777777777777777777777777777777777777777777777765443
No 116
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=75.54 E-value=4.2 Score=44.22 Aligned_cols=129 Identities=16% Similarity=0.262 Sum_probs=73.6
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCee-EEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGT-VFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNRE 123 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~T-IfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~e 123 (842)
...+|...+-+...+.+.+.+ ..++.|..+- ++-||..|+|||.++-+ ++.......
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVka--------------ll~~y~~~G--- 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKA--------------LLNEYADQG--- 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHH--------------HHHHHhhcC---
Confidence 355677776664445555444 6677777653 67799999999987632 222222211
Q ss_pred eEEEEeeeeeeccccccccccccccceeeecC-CCceEecCcEEEEc-CCHHHHHHHHhhccccccccccCcCCCCCCce
Q 003179 124 FLVRVSYMEIYNEEINDLLAVENQKLQIHESL-EHGVFVAGLREEIV-NSAEQVLKLIESGEVNRHFGETNMNVRSSRSH 201 (842)
Q Consensus 124 f~V~VSylEIYNE~V~DLL~~~~~~L~IrEd~-~~gv~V~gLtev~V-~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSH 201 (842)
+-.+||..+.+.||-.--.. + +..+ .-=+++.+|+--.- .++..+..+|.-|...| ....-+..+|.|-|
T Consensus 81 ----LRlIev~k~~L~~l~~l~~~-l--~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRH 152 (249)
T PF05673_consen 81 ----LRLIEVSKEDLGDLPELLDL-L--RDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRH 152 (249)
T ss_pred ----ceEEEECHHHhccHHHHHHH-H--hcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhh
Confidence 56788888877766431110 0 0001 11245555553222 23566667776666554 45555667788888
Q ss_pred eE
Q 003179 202 TI 203 (842)
Q Consensus 202 aI 203 (842)
.|
T Consensus 153 Lv 154 (249)
T PF05673_consen 153 LV 154 (249)
T ss_pred cc
Confidence 76
No 117
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.53 E-value=28 Score=36.92 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 341 DAALLKRQKLEIEELRRKLQGSHAG------VLEQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQ 410 (842)
Q Consensus 341 ~~~li~~lk~EI~~Lr~~L~~~~~~------~~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q 410 (842)
....+.+++.|+++|+.+|.+.... .+++.+....+...+.+.+..+|..+++..+.....++..+..++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778889999999888774422 222333333333333445555555555555444444444444333
No 118
>PF12846 AAA_10: AAA-like domain
Probab=75.47 E-value=1.2 Score=46.97 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.3
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5567889999999999875
No 119
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=75.05 E-value=1.8 Score=44.66 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..|..++...+..++..|+.||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 34555665555556668999999999874
No 120
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=75.05 E-value=1.8 Score=49.42 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=20.2
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+++.++. .++.|+..|+||||||+||.
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 3444443 46678889999999999984
No 121
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=74.97 E-value=24 Score=38.26 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=39.8
Q ss_pred hHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHH--hHhhhhhHHHHHHHhH
Q 003179 718 IKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKE--NVLKDYNTEVEKKKNL 795 (842)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 795 (842)
+.+-|..+.-+++..+.-+++....++.|+.++..+..+-+.+-.++.....++..|+++++ .+-.++.+...|...|
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555555555555555555555555555443 2223333333444444
Q ss_pred HHHHHH
Q 003179 796 EEEIKQ 801 (842)
Q Consensus 796 ~~~~~~ 801 (842)
+.||..
T Consensus 109 e~el~~ 114 (239)
T COG1579 109 EDELAE 114 (239)
T ss_pred HHHHHH
Confidence 444433
No 122
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=74.89 E-value=1.2 Score=46.20 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=13.6
Q ss_pred EEeeccCCCCcccccc
Q 003179 81 VFAYGQTSSGKTFTMN 96 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~ 96 (842)
+..+|.||||||+|+.
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567899999999985
No 123
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=74.43 E-value=3.1 Score=52.46 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=19.9
Q ss_pred HHHHh--cCCCeeEEeeccCCCCcccccc
Q 003179 70 IHAAV--EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 70 V~svL--~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+..++ .|-+.++|.||+||+|||.|+.
T Consensus 771 L~paIkgsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 771 LESGIKQSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred HHHHHhcCCCCceEEEECCCCCCHHHHHH
Confidence 34444 3445678899999999999874
No 124
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=74.39 E-value=1.9 Score=49.00 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=19.7
Q ss_pred HhcCCCeeEEeeccCCCCcccccc
Q 003179 73 AVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 73 vL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.+.--++.|+..|+||||||.||.
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHH
Confidence 343457899999999999999985
No 125
>PRK03918 chromosome segregation protein; Provisional
Probab=74.36 E-value=1.5e+02 Score=37.24 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=9.9
Q ss_pred hhhHHHHHhhhhcCCcc
Q 003179 818 SDLKSKIEKLRAQNPVS 834 (842)
Q Consensus 818 ~~~~~~~~~~~~~~~~~ 834 (842)
.+++..++.+++-.|+|
T Consensus 422 ~eL~~~l~~L~~~~~~C 438 (880)
T PRK03918 422 KELKKAIEELKKAKGKC 438 (880)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 34666666666555544
No 126
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=74.10 E-value=1.8 Score=43.68 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.+...+-.|.+..++-||+.|+|||+.|.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 34444445678899999999999998764
No 127
>PHA02562 46 endonuclease subunit; Provisional
Probab=73.95 E-value=1.9e+02 Score=34.23 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=9.3
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
..+-+|++|+|||..
T Consensus 29 ~~~i~G~NG~GKStl 43 (562)
T PHA02562 29 KTLITGKNGAGKSTM 43 (562)
T ss_pred EEEEECCCCCCHHHH
Confidence 444567777777654
No 128
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=73.82 E-value=27 Score=41.49 Aligned_cols=87 Identities=20% Similarity=0.306 Sum_probs=67.9
Q ss_pred hhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHH
Q 003179 721 KYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIK 800 (842)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (842)
-|..+.|+|..-|.+.--..+-...+=++.-.+.||+.+|+..+.....++.++.++||.+-.-|..-..+-..|.-|.+
T Consensus 199 ~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~ 278 (596)
T KOG4360|consen 199 LYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELE 278 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 36677888888888888877888888899999999999999999999999999999998876666666666655555555
Q ss_pred HHHHHHH
Q 003179 801 QFSVAFA 807 (842)
Q Consensus 801 ~~~~~~~ 807 (842)
..---+|
T Consensus 279 EleDkyA 285 (596)
T KOG4360|consen 279 ELEDKYA 285 (596)
T ss_pred HHHHHHH
Confidence 4443333
No 129
>PRK10869 recombination and repair protein; Provisional
Probab=73.41 E-value=56 Score=39.43 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=39.2
Q ss_pred hhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHH
Q 003179 714 ELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTE 788 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (842)
.|+.|+-||...-.++-...+.++.--+.+++.+..+..|+.+.+.+.+++.+..+.|+ ..+..+.+.|..+
T Consensus 307 ~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS---~~R~~aA~~l~~~ 378 (553)
T PRK10869 307 KQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH---QSRQRYAKELAQL 378 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34477788885555555554444444444455555555566666666555555555444 3444444444443
No 130
>PRK09183 transposase/IS protein; Provisional
Probab=72.78 E-value=1.8 Score=46.64 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=26.7
Q ss_pred ecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 48 FDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 48 FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
||.=|.+..+...+..-..-.. +-.|.| |+-+|++|+||||.+.+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHH
Confidence 4555666655544443221111 234554 56799999999998754
No 131
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=72.66 E-value=4.6 Score=49.43 Aligned_cols=89 Identities=19% Similarity=0.351 Sum_probs=56.0
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccCCC---CCCChHH----hHHHHHHHHHHh
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSA---DNPGVIS----LGVKDIFDAIQM 118 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~---~~~GIIP----Ral~dLF~~I~~ 118 (842)
|....=|.|.-.|..-+.. +++.+-+|.... ..+|.|||||||||-.-- ..|-||- .....|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 3334447788889887765 445555664333 378999999999996521 2232221 234556665554
Q ss_pred c-cccceEEEEeeeeeeccccc
Q 003179 119 M-SNREFLVRVSYMEIYNEEIN 139 (842)
Q Consensus 119 ~-~~~ef~V~VSylEIYNE~V~ 139 (842)
. ++..+...|||+..|.-+.|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 3 45557888999988876543
No 132
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=72.36 E-value=8.3 Score=44.07 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=28.9
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHH-Hhc--C--CCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHA-AVE--G--FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~s-vL~--G--yN~TIfAYGQTGSGKTyTM 95 (842)
.+.||.|.+-+..-+++.+.+..|+... .+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 3455555544433344544444444432 222 2 2345899999999999764
No 133
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=72.25 E-value=3.6 Score=43.39 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=18.6
Q ss_pred HHhcCCCeeEEeeccCCCCcccccc
Q 003179 72 AAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 72 svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..+....+.++-+|++|+|||+++.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344445678889999999998763
No 134
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.89 E-value=3.5e+02 Score=36.20 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=9.7
Q ss_pred HHHhHHHHHHHHHHHHHhhccc
Q 003179 791 KKKNLEEEIKQFSVAFACRQKS 812 (842)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~ 812 (842)
-+++|.+++..++..-|.-.+.
T Consensus 1055 e~~~l~~~~~~l~~~~a~l~g~ 1076 (1311)
T TIGR00606 1055 EHQKLEENIDLIKRNHVLALGR 1076 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333
No 135
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=71.54 E-value=11 Score=41.05 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=21.8
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.+..++..-.+.|+-.|+||||||.||.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3455565556778888999999999985
No 136
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=71.44 E-value=4.2 Score=50.81 Aligned_cols=25 Identities=36% Similarity=0.283 Sum_probs=20.6
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..+.+|.|+.|.| |||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 345567999998888 9999999873
No 137
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=71.39 E-value=2.7 Score=42.91 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.9
Q ss_pred eeEEeeccCCCCccccccC
Q 003179 79 GTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~G 97 (842)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4589999999999998764
No 138
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=71.38 E-value=2.1 Score=43.07 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=17.0
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|..++..-. ..+..|+.|||||+|+.
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 3445553332 46678999999999875
No 139
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=71.22 E-value=4.3 Score=47.41 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=26.9
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHH-hc--CC--CeeEEeeccCCCCccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAA-VE--GF--NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~sv-L~--Gy--N~TIfAYGQTGSGKTyTM 95 (842)
+|+.|.+-+..-+++.+.+..|+...- +. |. ...|+-||++|+|||++.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 445554433333445544444444322 11 21 224788999999999875
No 140
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=71.15 E-value=3.3 Score=45.07 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=26.1
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+||.+.+ |.++.+.+ ...+-.|....++-||++|+|||++..
T Consensus 13 ~~~~~~g----~~~~~~~L----~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERL----SRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHH----HHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 4677664 44444332 222224443458889999999999874
No 141
>PRK11637 AmiB activator; Provisional
Probab=70.97 E-value=55 Score=37.86 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 343 ALLKRQKLEIEELRRKLQGSH--AGVLEQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQN 415 (842)
Q Consensus 343 ~li~~lk~EI~~Lr~~L~~~~--~~~~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~ 415 (842)
..++.++.+|..++.++.... ...++.++..+..++.........+..++.........++..+.+++.+|..
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665555322 1123444444444444444444444444444444444444444444444443
No 142
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.67 E-value=36 Score=42.53 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHH
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVL 582 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (842)
+++..+.++....+....++.-..+....-++.+..|+.+|+.+..
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq 695 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQ 695 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677766666666666666666655566666666666666553
No 143
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.48 E-value=4e+02 Score=36.34 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=51.4
Q ss_pred hhhhhhhhHhhhhchhhhhhhhhhh---HHhhHHHHHHH---HHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhh
Q 003179 711 LSSELNTIKEKYHGLEKDLDLNNKF---LETSKEMYDSL---EREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKD 784 (842)
Q Consensus 711 ~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (842)
+-..+..+..+++.|+..+..-+++ |.+...++... +.+++.|.++....+..++ .+++.+-..
T Consensus 511 ~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 580 (1486)
T PRK04863 511 LAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS----------ESVSEARER 580 (1486)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 3345566667777777765544332 22222221111 2344444444444443333 233444444
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhhccceeeehhhhHHHHHhhhhcCCc
Q 003179 785 YNTEVEKKKNLEEEIKQFSVAFACRQKSLVSFHSDLKSKIEKLRAQNPV 833 (842)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (842)
.....++.+.|.+.|.++..-+.. .-.....+++|+.|.|-
T Consensus 581 ~~~~r~~~~qL~~~i~~l~~~ap~--------W~~a~~al~~L~eq~g~ 621 (1486)
T PRK04863 581 RMALRQQLEQLQARIQRLAARAPA--------WLAAQDALARLREQSGE 621 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChH--------HHhhHHHHHHHHHhcch
Confidence 555566666677776666543333 12234556667766653
No 144
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=70.35 E-value=1.7e+02 Score=40.24 Aligned_cols=78 Identities=15% Similarity=0.291 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh--------------hhHhhhHHHHHHHhcchhhhhhhhcchhHH
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTG--------------EISELRQEVLVIREIPRRLYESVVSSKDFY 602 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (842)
.|+..|+.+|+...++...+-..+..-...+..+.. .++-++.|+-....+..+|-+.+.+..+..
T Consensus 80 ~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~ 159 (1822)
T KOG4674|consen 80 NELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTL 159 (1822)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777666666665555544444444433 344444455555555555555555555555
Q ss_pred HHHHHhhhhhcc
Q 003179 603 EDLLCSMKSFAA 614 (842)
Q Consensus 603 ~~~~~~~~~~~~ 614 (842)
.++-.+.+....
T Consensus 160 ~e~e~r~~e~~s 171 (1822)
T KOG4674|consen 160 SELEARLQETQS 171 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 145
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=69.98 E-value=3.1 Score=45.24 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=17.0
Q ss_pred cCC-CeeEEeeccCCCCcccccc
Q 003179 75 EGF-NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 75 ~Gy-N~TIfAYGQTGSGKTyTM~ 96 (842)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 4566779999999999874
No 146
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=69.44 E-value=1.8 Score=39.87 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+-||++|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999875
No 147
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=69.30 E-value=3.5 Score=46.60 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 56 CSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 56 asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..|..+|+.+...+. ......+|.-|+.|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 468999998865543 344456789999999999986
No 148
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=68.41 E-value=90 Score=31.24 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=48.0
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccc
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTL 771 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (842)
-|+.+++.|-+.....++.|..-..-|.....+-+.+||.+..|..+++.+-.++.+...++
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45556667767777777777777777888888888999999999999999988887665443
No 149
>PRK02224 chromosome segregation protein; Provisional
Probab=67.97 E-value=3.3e+02 Score=34.36 Aligned_cols=89 Identities=17% Similarity=0.282 Sum_probs=47.3
Q ss_pred hhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHH-----HHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhh
Q 003179 711 LSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLER-----EFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDY 785 (842)
Q Consensus 711 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (842)
+.++++.+..+...|++....-...|++.+++.+.|++ .+..|.++.+.+...+..-..++.....+.+++.+++
T Consensus 604 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i 683 (880)
T PRK02224 604 AEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEI 683 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444545455555555444555556666666666643 3555666666666666666555555555555554444
Q ss_pred h---HHHHHHHhHHHHH
Q 003179 786 N---TEVEKKKNLEEEI 799 (842)
Q Consensus 786 ~---~~~~~~~~~~~~~ 799 (842)
. ....+...+++++
T Consensus 684 ~~~~~~~e~~~~~~~~~ 700 (880)
T PRK02224 684 GAVENELEELEELRERR 700 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3 3333333444444
No 150
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=67.79 E-value=2.4 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=17.4
Q ss_pred hcCCCeeEEeeccCCCCcccccc
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+.-.++.++..|..|||||+||.
T Consensus 9 i~~~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 9 IRSTEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp HHS-SSEEEEEE-TTSSHHHHHH
T ss_pred HhCCCCCEEEEeCCCCCchHHHH
Confidence 33377888889999999999975
No 151
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=67.68 E-value=3.8 Score=39.35 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=18.4
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
+..++++. ..++..|+||||||.++..
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 34444442 3457778999999998754
No 152
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.54 E-value=4.2e+02 Score=35.45 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEE 563 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (842)
.++..++.+++.+..+...++..+.+.
T Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 902 REIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 444455555555555555555555443
No 153
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.38 E-value=8.7 Score=44.04 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=60.8
Q ss_pred EEEEEeCCCCCCc-cCCCceEEEcCCeEEEeecCCCCCC----------CcceeecEeeCCCCChHHHHHHHHHHHHHHH
Q 003179 5 CVAVRVRPPVSLE-TSGGVFWKVEDNRVSLHRQHDTPVS----------GTSYAFDHVFEETCSNARVYELLTKDIIHAA 73 (842)
Q Consensus 5 rV~VRVRP~~~~E-~~~~~~~~v~~~~v~l~~~~~~~~~----------~~sF~FD~VF~~~asQeeVYe~v~~pLV~sv 73 (842)
+.+|++.|....+ ...|..+.++.++..+...-..... ...-+|+.|=+-+..-++|.+.+--|+.+-=
T Consensus 96 ~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PE 175 (406)
T COG1222 96 KFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPE 175 (406)
T ss_pred eEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHH
Confidence 4567777766655 3345555555444443321111011 1122334443333333566666665654432
Q ss_pred h---cCCCe--eEEeeccCCCCcccccc--------------CCC---CCCChHHhHHHHHHHHHHhc
Q 003179 74 V---EGFNG--TVFAYGQTSSGKTFTMN--------------GSA---DNPGVISLGVKDIFDAIQMM 119 (842)
Q Consensus 74 L---~GyN~--TIfAYGQTGSGKTyTM~--------------Gs~---~~~GIIPRal~dLF~~I~~~ 119 (842)
+ =|..- .|+-||+.|+|||-.-- |+. .--|==+|.+++||......
T Consensus 176 lF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArek 243 (406)
T COG1222 176 LFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREK 243 (406)
T ss_pred HHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhc
Confidence 2 24443 58999999999986431 211 01144489999999887654
No 154
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=67.07 E-value=3.2 Score=45.90 Aligned_cols=29 Identities=34% Similarity=0.504 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..++..++.+ ...|+..|+||||||.+|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3455566654 4567888999999999874
No 155
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=66.96 E-value=2.2 Score=44.26 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.9
Q ss_pred eEEeeccCCCCcccccc
Q 003179 80 TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~ 96 (842)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47888999999999974
No 156
>PF13479 AAA_24: AAA domain
Probab=66.29 E-value=2.8 Score=43.61 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.8
Q ss_pred CeeEEeeccCCCCccccccC
Q 003179 78 NGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~G 97 (842)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999998754
No 157
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=66.27 E-value=2.6e+02 Score=35.44 Aligned_cols=100 Identities=26% Similarity=0.312 Sum_probs=61.7
Q ss_pred hhhhhHhhhhchhhhhhh---------------hhhhHHhhHHHHHHHHHHHHHHH-----------------HHhHHHH
Q 003179 714 ELNTIKEKYHGLEKDLDL---------------NNKFLETSKEMYDSLEREFRLLQ-----------------EERDSLL 761 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 761 (842)
+-.+|+|++|.+.|||.+ .+|.||..| +.+.||-|++-|+ .|-++|-
T Consensus 149 en~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vk-kiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~ 227 (769)
T PF05911_consen 149 ENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVK-KIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLG 227 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhc
Confidence 344566666666666543 345565554 6789999998774 4445542
Q ss_pred HHHhhhccccccch---------hhHHhHhhhhhHHHHHHHhHHHHHHHHHHHHHhhcccee
Q 003179 762 NKVSESSQTLTMVT---------DQKENVLKDYNTEVEKKKNLEEEIKQFSVAFACRQKSLV 814 (842)
Q Consensus 762 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (842)
+...+...+-.+.. +.-....++-+.=..|.-.+++|.|.+-.|+|.|-.-|-
T Consensus 228 ~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq 289 (769)
T PF05911_consen 228 RDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQ 289 (769)
T ss_pred cccccccCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222 223444566667778999999999999999999976553
No 158
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=65.67 E-value=3.9 Score=45.70 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.++..++.+. ..|+..|.||||||++|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4566666653 556677999999997764
No 159
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.50 E-value=4.7 Score=44.63 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.+++..+.--.-+.|+..|.|||||+.||-
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 567777777778889999999999999984
No 160
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=65.23 E-value=2.7 Score=38.78 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.9
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999864
No 161
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=64.67 E-value=5.7e+02 Score=35.89 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003179 373 KLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNHNSLV 420 (842)
Q Consensus 373 kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~v 420 (842)
.+.+.+.+.+.+...+..+++++......+...+.+++.+|..+...+
T Consensus 1066 el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1066 ELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666666666666666666666666654443
No 162
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=64.16 E-value=2.5e+02 Score=33.67 Aligned_cols=145 Identities=20% Similarity=0.219 Sum_probs=72.0
Q ss_pred ChhhhhHHHHHHHHHHhhhhHhhhcccCCCC--cccCCCCCCCCCCccchhhHHHHhhhhhhhhhHhhhhc----hhhhh
Q 003179 656 DSLVREQCKVFCEKLKSTISALILSEKAPID--NKQGKNSPCSCNNKEEESTCWKEKLSSELNTIKEKYHG----LEKDL 729 (842)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~ 729 (842)
++-+.+-++-+-..|+.-|+-++-.|-+-.- -++-+| ++-+-+||+.+-++|+. .-++|
T Consensus 453 ~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~---------------~~~~i~El~~~l~~~e~~L~~a~s~~ 517 (622)
T COG5185 453 GSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKN---------------LKHDINELTQILEKLELELSEANSKF 517 (622)
T ss_pred ccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhh---------------HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446667888888888888877766543222 222222 33344455555444432 11122
Q ss_pred h----hhhhhHHhhHHHHHHHHHHHHHHHHH-hHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHHHHHH
Q 003179 730 D----LNNKFLETSKEMYDSLEREFRLLQEE-RDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQFSV 804 (842)
Q Consensus 730 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (842)
. .+...+-.++...+.||+|+..|+=+ .-|+|+. -+-.|...++. +.++-++|.+ |.++-++|-.|-.
T Consensus 518 ~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~-eq~vqs~~i~l---d~~~~~~n~~---r~~i~k~V~~v~~ 590 (622)
T COG5185 518 ELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDA-EQLVQSTEIKL---DELKVDLNRK---RYKIHKQVIHVID 590 (622)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhH-HHHHHHHHhhH---HHHHHHHHHH---HHHHHHHHHHHHH
Confidence 1 22233445566677888888777643 2333321 12223333333 3344555543 3455566655543
Q ss_pred HHHhhccceeeehhhhHHHHHhhhh
Q 003179 805 AFACRQKSLVSFHSDLKSKIEKLRA 829 (842)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (842)
+- +-||--+.+-+|++++
T Consensus 591 ~~-------~~fk~~IQssledl~~ 608 (622)
T COG5185 591 IT-------SKFKINIQSSLEDLEN 608 (622)
T ss_pred HH-------HHhhhhHHhhHHHHHH
Confidence 32 3344444444554443
No 163
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=63.97 E-value=2.2e+02 Score=36.07 Aligned_cols=230 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred Ccch-hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHH----HHH
Q 003179 533 NENY-RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESVVSSKDFYED----LLC 607 (842)
Q Consensus 533 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 607 (842)
.+.+ .+|..|+..|+.+....+..+........=-..+.+||++++....+.-.--..|-..+-|+-+.+.+ +-.
T Consensus 338 ~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~ 417 (775)
T PF10174_consen 338 AEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDE 417 (775)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhccCCcchhhhhhhcccccccccchhhhhhhhhccCCCCccCCCChhhhhHHHHHHHHHHhhhhHhhhcccCCCCc
Q 003179 608 SMKSFAADGESSTAKKLVSISEIGSSLFSTLETNFLMAMDGDKSFSNNDSLVREQCKVFCEKLKSTISALILSEKAPIDN 687 (842)
Q Consensus 608 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (842)
....+..-.++++.+.+.+.-|.+.. --+-++++|+..-
T Consensus 418 ~k~Rl~~~~d~~~~~~~~~~lEea~~----------------------------eker~~e~l~e~r------------- 456 (775)
T PF10174_consen 418 EKERLSSQADSSNEDEALETLEEALR----------------------------EKERLQERLEEQR------------- 456 (775)
T ss_pred HHHHHhccccccchHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH-------------
Q ss_pred ccCCCCCCCCCCccchhhHHHHhhhhhhhhhHhhhhchhhhhhhhh----------------------------hhHHhh
Q 003179 688 KQGKNSPCSCNNKEEESTCWKEKLSSELNTIKEKYHGLEKDLDLNN----------------------------KFLETS 739 (842)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------------~~~~~~ 739 (842)
.|.+-++..+. +.+..++.-++.+.+.|+++|.--. -.+|..
T Consensus 457 ------~~~e~e~~Eel----e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~ 526 (775)
T PF10174_consen 457 ------ERAEKERQEEL----ETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKK 526 (775)
T ss_pred ------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHH------HHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHHHHHHHHHhhccce
Q 003179 740 KEMYDSLEREF------RLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQFSVAFACRQKSL 813 (842)
Q Consensus 740 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (842)
+++|..|++++ .-+..+-..|-+.+........---..=+.+|.-|..-.+=+.+++.+|+.+.-..--.+..+
T Consensus 527 rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~ 606 (775)
T PF10174_consen 527 REKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHL 606 (775)
T ss_pred hhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccch
No 164
>PHA00729 NTP-binding motif containing protein
Probab=63.93 E-value=5.7 Score=42.62 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 66 TKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 66 ~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
++.++..+..|--..|+.+|.+|+||||...
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 4556666664433579999999999999765
No 165
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=63.76 E-value=49 Score=34.91 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhccc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 345 LKRQKLEIEELRRKLQGSH-----AGVLEQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQM 411 (842)
Q Consensus 345 i~~lk~EI~~Lr~~L~~~~-----~~~~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~ 411 (842)
-.+|..+|..|+.++.... ...+++++..|+......+.+...+..+..+..+.+..+...+..++.
T Consensus 38 na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqe 109 (193)
T PF14662_consen 38 NAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQE 109 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888776543 345677888888777777777777777766666655555555555443
No 166
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.35 E-value=37 Score=34.64 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=12.2
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 003179 732 NNKFLETSKEMYDSLEREFRLLQEERDSLL 761 (842)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (842)
..+++++.+++.++++..+..+.+|-.-|.
T Consensus 121 ~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 121 LRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333333
No 167
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=63.34 E-value=5 Score=40.73 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+++..++.. ...+.-.|+||||||.+|.
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 445555544 3457778999999999864
No 168
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.26 E-value=7.5 Score=44.78 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.6
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999999974
No 169
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=63.14 E-value=4.7 Score=45.28 Aligned_cols=29 Identities=34% Similarity=0.383 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..++..++.+. ..|+..|+||||||.+|.
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 34455555443 447778999999999884
No 170
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.07 E-value=2.4e+02 Score=30.95 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHH-Hhhhhhh-hhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHHhhh
Q 003179 538 DVQKLKRQLENVTEEKNEFQRKYSEEK-ILNARLT-GEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLCSMK 610 (842)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (842)
....|+.+++.+.++..-+.+.|.+++ .|..++. ....+. .. --...|...+..-+.-|+..+....
T Consensus 118 ~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~----~~--~~~~dL~~~L~eiR~~ye~~~~~~~ 186 (312)
T PF00038_consen 118 ARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEV----DQ--FRSSDLSAALREIRAQYEEIAQKNR 186 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceee----cc--cccccchhhhhhHHHHHHHHHhhhh
Confidence 345677888888888888888888876 6666553 111111 11 1123466666666777776665544
No 171
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=62.40 E-value=1e+02 Score=37.53 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=39.9
Q ss_pred hhhhhHhhhhchh-------hhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 003179 714 ELNTIKEKYHGLE-------KDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT 772 (842)
Q Consensus 714 ~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (842)
.|..|+.||...- .++...-+.|.++-+..+.||.++..++.+-+-.-+++|.+.++.+
T Consensus 308 ~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A 373 (557)
T COG0497 308 ALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAA 373 (557)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888722 2334444566777777788888888888777777777776655544
No 172
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=62.38 E-value=2.7e+02 Score=31.39 Aligned_cols=103 Identities=16% Similarity=0.274 Sum_probs=62.8
Q ss_pred HHHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhh
Q 003179 707 WKEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYN 786 (842)
Q Consensus 707 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (842)
|...+-+++.-|..+|++-.+.+..+.+ ...|-.+.+-|+.+++.+.+++.+-++.+. ..-.++.
T Consensus 132 ~E~~lvq~I~~L~k~le~~~k~~e~~~~--------~~el~aei~~lk~~~~e~~eki~~la~eaq-------e~he~m~ 196 (294)
T COG1340 132 EERELVQKIKELRKELEDAKKALEENEK--------LKELKAEIDELKKKAREIHEKIQELANEAQ-------EYHEEMI 196 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 3447777777776666666665555443 445566778888888888888877766664 3334445
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhccceeeehhhhHHHH
Q 003179 787 TEVEKKKNLEEEIKQFSVAFACRQKSLVSFHSDLKSKI 824 (842)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (842)
+-.++.+++..++.....-|-..+...-..|-+|...-
T Consensus 197 k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~ 234 (294)
T COG1340 197 KLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQ 234 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555566655555555555555555555555554433
No 173
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=62.18 E-value=7.2 Score=45.06 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=37.9
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhc----CCCeeEEeeccCCCCcccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVE----GFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~----GyN~TIfAYGQTGSGKTyT 94 (842)
.++.||.+.+.----..+.+.++..++.+++. -.---+.-||+.|+|||+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 34677888766666667777888788888774 2334578899999999986
No 174
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=61.87 E-value=2.3 Score=41.66 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=13.0
Q ss_pred hcCCCeeEEeeccCCCCccccc
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM 95 (842)
..|-...++-+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3666778999999999999874
No 175
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=61.21 E-value=5.8 Score=39.89 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=17.5
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
+..++.|.| ++..++||+|||.+
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHH
Confidence 344455877 57778999999987
No 176
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=61.04 E-value=8.8 Score=41.96 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.7
Q ss_pred eEEeeccCCCCcccccc
Q 003179 80 TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~ 96 (842)
.|+-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56677999999999975
No 177
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=60.80 E-value=1.5e+02 Score=37.83 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=13.9
Q ss_pred CCeeEEeeccCCCCccccc
Q 003179 77 FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM 95 (842)
.++..+-+|+||||||.-|
T Consensus 24 ~~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3445677899999997543
No 178
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.78 E-value=5.3e+02 Score=34.25 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=31.2
Q ss_pred hhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHH
Q 003179 568 ARLTGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLC 607 (842)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (842)
++++.+|.+...+...++-.|......+.+|-.-.+++..
T Consensus 415 kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~ 454 (1293)
T KOG0996|consen 415 KKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE 454 (1293)
T ss_pred HHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH
Confidence 3457888888888899999999888888888766655543
No 179
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=60.63 E-value=5 Score=45.08 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.++..++.+- ..|+-.|.||||||.+|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4445555432 347888999999999984
No 180
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=60.46 E-value=4.9e+02 Score=36.12 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=32.1
Q ss_pred hhhhHhhhHHHHHHHhcchhhhhhhhcchhHHH---HHHHhhhhhc
Q 003179 571 TGEISELRQEVLVIREIPRRLYESVVSSKDFYE---DLLCSMKSFA 613 (842)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 613 (842)
..+++-|++|..+++..-.||.-.+.+|---|. ..+..|+++-
T Consensus 744 e~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~ 789 (1822)
T KOG4674|consen 744 EAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQK 789 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999877777655444 4556666654
No 181
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=60.01 E-value=2.3e+02 Score=29.87 Aligned_cols=52 Identities=31% Similarity=0.298 Sum_probs=36.1
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHh
Q 003179 731 LNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVL 782 (842)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (842)
...+.|.+.+-.|+.|+..|+-+..|||.|.+++-.+.+.+---+.-|..+|
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lL 148 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLL 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777788888888888888888888877776654445444443
No 182
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=59.90 E-value=6 Score=48.02 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=30.2
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
-+||.+++.+ .... .++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGqs----~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQE----RAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeCc----HHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 5678777543 3333 2445556788888999999999999875
No 183
>PTZ00424 helicase 45; Provisional
Probab=59.82 E-value=5.4 Score=44.69 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 445667889985 46789999999764
No 184
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.67 E-value=3.9e+02 Score=32.39 Aligned_cols=72 Identities=25% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH--HhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHHhhh
Q 003179 539 VQKLKRQLENVTEEKNEFQRKYSEEK--ILNARLTGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLCSMK 610 (842)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (842)
+..|..+|.....++.++..--..-- .-...+..--.++.+-...|.+||.-+.+--.-+-+-++++-...+
T Consensus 167 ~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~ 240 (569)
T PRK04778 167 LDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYR 240 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45566666666555554443211100 0011111122223333445666776554443334444444443333
No 185
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=59.16 E-value=46 Score=40.17 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=57.7
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHH---hHhhhhh----HHHHHHHhHHHHHH
Q 003179 728 DLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKE---NVLKDYN----TEVEKKKNLEEEIK 800 (842)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~ 800 (842)
|+...+..+++.....+.+|.++.-|++|.+.|..++-++.+.+..+-.+.- ..|-+++ +-.-|.+.|++|++
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~ 172 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK 172 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6777788889998899999999999999999999999988777665444333 3333333 44457778888877
Q ss_pred HHHH
Q 003179 801 QFSV 804 (842)
Q Consensus 801 ~~~~ 804 (842)
.+-.
T Consensus 173 ~Lk~ 176 (546)
T KOG0977|consen 173 RLKA 176 (546)
T ss_pred HHHH
Confidence 6543
No 186
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.13 E-value=28 Score=39.08 Aligned_cols=106 Identities=24% Similarity=0.403 Sum_probs=43.2
Q ss_pred HhhhhchhhhhhhhhhhHHhh------HHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHH
Q 003179 719 KEKYHGLEKDLDLNNKFLETS------KEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKK 792 (842)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (842)
+.++..+++|+..-..+|+.. .+.++.++.++..|+.|...|++++.+-- .+++.+.+++..-....
T Consensus 15 ~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE-------~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 15 DKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELE-------KEREELDQELEELEEEL 87 (314)
T ss_dssp ---------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 333444455555544444333 34556677777777777777777766533 33444444444444444
Q ss_pred HhHHHHHHHHHHHHHhhccceeeehh----------hhHHHHHhhhhcC
Q 003179 793 KNLEEEIKQFSVAFACRQKSLVSFHS----------DLKSKIEKLRAQN 831 (842)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 831 (842)
+.|+++..++-..+..-+..+..|.. -....+++||..|
T Consensus 88 ~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 88 EELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44544444444444444443333332 3344556666555
No 187
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=59.05 E-value=6.5 Score=41.49 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=13.7
Q ss_pred CCeeEEeeccCCCCccccc
Q 003179 77 FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM 95 (842)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5558999999999999864
No 188
>PLN03025 replication factor C subunit; Provisional
Probab=58.87 E-value=6.9 Score=43.18 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=16.5
Q ss_pred cCCCeeEEeeccCCCCcccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|.-.-++-||++|+|||++..
T Consensus 31 ~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 31 DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 3433346679999999999876
No 189
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=58.79 E-value=6.1 Score=44.90 Aligned_cols=73 Identities=29% Similarity=0.374 Sum_probs=45.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccccC-----CCCCC----------------------------ChHHhHHHHHHH
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMNG-----SADNP----------------------------GVISLGVKDIFD 114 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~G-----s~~~~----------------------------GIIPRal~dLF~ 114 (842)
.++..++.+. +.|+-.|.||||||+++.- ++.++ |----.+.+|..
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvk 242 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVK 242 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHHH
Confidence 4455555555 7789999999999998742 11111 222234566654
Q ss_pred -HHHhccccceEEEEeeeeeecccccccccccc
Q 003179 115 -AIQMMSNREFLVRVSYMEIYNEEINDLLAVEN 146 (842)
Q Consensus 115 -~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~ 146 (842)
.+...+++ +=+-||+..+.+|||..-+
T Consensus 243 n~LRmRPDR-----IiVGEVRG~Ea~dLL~Amn 270 (355)
T COG4962 243 NALRMRPDR-----IIVGEVRGVEALDLLQAMN 270 (355)
T ss_pred HHhhcCccc-----eEEEEecCccHHHHHHHhc
Confidence 33444553 3457999999999997543
No 190
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=58.75 E-value=53 Score=40.85 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=21.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccceeee
Q 003179 788 EVEKKKNLEEEIKQFSVAFACRQKSLVSF 816 (842)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (842)
=++|+++||.||++.-...-.++-...-+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999998877776666555443
No 191
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=58.74 E-value=4 Score=38.60 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=13.3
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 192
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=58.50 E-value=3.6 Score=42.00 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcccccc
Q 003179 80 TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~ 96 (842)
-++.+|+||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57899999999999875
No 193
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.48 E-value=18 Score=29.56 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccc
Q 003179 738 TSKEMYDSLEREFRLLQEERDSLLNKVSESSQT 770 (842)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (842)
..|..|++|-.+++-|+.|+++|...|..-+.+
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777777776655443
No 194
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=58.45 E-value=3.4 Score=38.34 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEeeccCCCCccccccCCCCCCChHHhHHHHHHHHH
Q 003179 81 VFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAI 116 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I 116 (842)
|+-||++|.|||+.+. ..+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~~----------~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK----------ELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHH----------HHHHHHHHHh
Confidence 5789999999999765 5666666665
No 195
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=58.25 E-value=2.6e+02 Score=29.88 Aligned_cols=59 Identities=25% Similarity=0.252 Sum_probs=49.3
Q ss_pred HhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 003179 709 EKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSES 767 (842)
Q Consensus 709 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (842)
-+|.-|+..++-+..-++.++..+..+.+-.+.+++-+...+..+..+...|...+..-
T Consensus 153 ~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 153 WLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888889999999999999899898888888888888887777766543
No 196
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=58.09 E-value=57 Score=34.91 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhh
Q 003179 539 VQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELR 578 (842)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (842)
++.++.+++.+.++...++.+..+...--.+...++..|+
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~ 42 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQ 42 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888877766433333344443333
No 197
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.96 E-value=26 Score=28.62 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=30.6
Q ss_pred hhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003179 725 LEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKV 764 (842)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (842)
||+++..-+..-+..+..|++|.+|.+-|+.|-.+|-.++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5777777777777888888888888888888777776554
No 198
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=57.48 E-value=6.7 Score=45.31 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..+++|.| +++.++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 3445678887 677889999999763
No 199
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.18 E-value=2.6e+02 Score=36.89 Aligned_cols=62 Identities=24% Similarity=0.201 Sum_probs=29.0
Q ss_pred hhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 003179 711 LSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT 772 (842)
Q Consensus 711 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (842)
..+||..+...-..+.+.++.-...|.++.+.+...--++.-++.+-+++-+++.+.+..+.
T Consensus 505 aesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~ 566 (1293)
T KOG0996|consen 505 AESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP 566 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence 34455555444444444444444444444444444444444444444444444444444433
No 200
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=57.09 E-value=48 Score=36.73 Aligned_cols=83 Identities=24% Similarity=0.296 Sum_probs=52.2
Q ss_pred chhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHHHHH
Q 003179 724 GLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQFS 803 (842)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (842)
.||..|.--+|..|.-+..|..|.||...|-+..+.|-..--+-+++|.+-..|=--+-..|+.-...-..|++|||.+=
T Consensus 43 SlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 43 SLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666777777777777777777666655555555554444433444566666667777888888764
Q ss_pred HHH
Q 003179 804 VAF 806 (842)
Q Consensus 804 ~~~ 806 (842)
--+
T Consensus 123 sEL 125 (307)
T PF10481_consen 123 SEL 125 (307)
T ss_pred HHH
Confidence 433
No 201
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.03 E-value=60 Score=32.11 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=27.5
Q ss_pred hhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 003179 717 TIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVS 765 (842)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (842)
.+..+.+.+..+...-....+..+++.+.+|+++..++..-..|..++.
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555566666666666666655555555544443
No 202
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.03 E-value=2.5e+02 Score=35.51 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=46.5
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchh
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTD 776 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (842)
-|+.||.+|+.|.|.|.-.+..-+--+-..|.-.+.+-+-+++.--|++.|.+++-+.-++|--.+-
T Consensus 441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5788999999999988876665555555666666667777777777777777776666555543333
No 203
>PRK06547 hypothetical protein; Provisional
Probab=56.82 E-value=9 Score=38.98 Aligned_cols=29 Identities=31% Similarity=0.171 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..++..+..+.---|..+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34455555555555666799999999864
No 204
>PRK10865 protein disaggregation chaperone; Provisional
Probab=56.82 E-value=5.3e+02 Score=33.04 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
+.+++-+.......++-||++|+|||+...|
T Consensus 188 ~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 188 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred HHHHHHHhcCCcCceEEECCCCCCHHHHHHH
Confidence 3444433344444567889999999998865
No 205
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.72 E-value=4.1e+02 Score=33.48 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=27.8
Q ss_pred cccchhhHHhHhhhhhHHHHHHHhHHHHHHHHHHHH
Q 003179 771 LTMVTDQKENVLKDYNTEVEKKKNLEEEIKQFSVAF 806 (842)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (842)
..+=..|++.+..-|..+-+.-+++-++||.|...+
T Consensus 680 ~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 680 IVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345567998888888888888888888998886543
No 206
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=56.67 E-value=3e+02 Score=35.21 Aligned_cols=80 Identities=28% Similarity=0.388 Sum_probs=38.5
Q ss_pred hhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHH
Q 003179 714 ELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKK 793 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (842)
+...+.+.|..+++++.. .-+....+++.+..++.+...+-.++.+..+.+.-....++++...|..-..+.+
T Consensus 362 ~~~~l~~~~~~l~~~~~~-------~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~ 434 (908)
T COG0419 362 RLKELEERLEELEKELEK-------ALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK 434 (908)
T ss_pred HHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444432 2234455566666666666666666665555554333333444444433333344
Q ss_pred hHHHHHH
Q 003179 794 NLEEEIK 800 (842)
Q Consensus 794 ~~~~~~~ 800 (842)
.++..+.
T Consensus 435 ~~~~~~~ 441 (908)
T COG0419 435 KLEEQIN 441 (908)
T ss_pred HHHHHHH
Confidence 4444433
No 207
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.45 E-value=7.3 Score=43.97 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=25.9
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcC-CCeeEEeeccCCCCccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEG-FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~G-yN~TIfAYGQTGSGKTyTM 95 (842)
+||.|.+ |+.+-+ .+...+-.| ...+++-||+.|+|||++.
T Consensus 14 ~~~~iiG----q~~~~~----~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVT----AISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHH----HHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 4566654 444433 233333343 4567899999999999876
No 208
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=56.23 E-value=4.2 Score=38.64 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=13.4
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999865
No 209
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=56.16 E-value=37 Score=35.75 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=53.1
Q ss_pred hhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHH-HHHhHHHHHHHHHHHHH
Q 003179 729 LDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVE-KKKNLEEEIKQFSVAFA 807 (842)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 807 (842)
...+.+.|..++.|+..+++++.-|+-|...|.+++.+-.+.-.-....=+.++-|+..... |---|+.-+.....+.-
T Consensus 81 y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE 160 (201)
T PF13851_consen 81 YEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLE 160 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888888776544333222222222222222111 11225566677777777
Q ss_pred hhccceeeehh
Q 003179 808 CRQKSLVSFHS 818 (842)
Q Consensus 808 ~~~~~~~~~~~ 818 (842)
.|..+|.+..+
T Consensus 161 ~keaqL~evl~ 171 (201)
T PF13851_consen 161 KKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHH
Confidence 77766655443
No 210
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=56.02 E-value=3.8 Score=50.45 Aligned_cols=11 Identities=9% Similarity=0.504 Sum_probs=5.9
Q ss_pred hHHHHHHHHHH
Q 003179 107 LGVKDIFDAIQ 117 (842)
Q Consensus 107 Ral~dLF~~I~ 117 (842)
.++.+++..|.
T Consensus 35 v~L~evL~qID 45 (713)
T PF05622_consen 35 VALAEVLHQID 45 (713)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHhC
Confidence 35566666664
No 211
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=55.97 E-value=10 Score=42.06 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=30.0
Q ss_pred eeEEeeccCCCCcccccc---CCC--------------CCCChHHhHHHHHHHHHHhcc
Q 003179 79 GTVFAYGQTSSGKTFTMN---GSA--------------DNPGVISLGVKDIFDAIQMMS 120 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~---Gs~--------------~~~GIIPRal~dLF~~I~~~~ 120 (842)
-.|+-||++|+|||++-- +.. ++-|=-.|-+++||+...+..
T Consensus 152 knVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a 210 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA 210 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 368999999999998653 211 234666788889998876543
No 212
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=55.75 E-value=1.4e+02 Score=31.19 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=12.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcc
Q 003179 789 VEKKKNLEEEIKQFSVAFACRQK 811 (842)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~ 811 (842)
..|.++++.=+..|.......|+
T Consensus 202 ~~k~~d~k~~l~~~~~~~i~~~~ 224 (236)
T PF09325_consen 202 KEKVKDFKSMLEEYAESQIEYQK 224 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555565555555555444443
No 213
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=55.74 E-value=4.9 Score=45.46 Aligned_cols=28 Identities=36% Similarity=0.351 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.++..++. ....|+..|+||||||++|.
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 44555553 23447888999999999885
No 214
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=55.67 E-value=53 Score=40.17 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=15.7
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHH
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYD 744 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (842)
.|..++..+..+++.++.++......+++...+.+
T Consensus 213 ~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 213 ALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 215
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=55.52 E-value=11 Score=41.38 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 63 ELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 63 e~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
-..+.|++ ..+.--+..|-.||+|++|||.++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 44456666 556677788999999999999877
No 216
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=55.46 E-value=12 Score=40.14 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.5
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
...++-||++|+|||++..
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3457889999999999863
No 217
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=55.39 E-value=5.5 Score=40.50 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56888999999999964
No 218
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=55.37 E-value=4.7 Score=36.95 Aligned_cols=15 Identities=33% Similarity=0.255 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999875
No 219
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=55.34 E-value=8.6 Score=47.06 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHH-hcCCCeeEEeeccCCCCccccc
Q 003179 59 ARVYELLTKDIIHAA-VEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 59 eeVYe~v~~pLV~sv-L~GyN~TIfAYGQTGSGKTyTM 95 (842)
-.||...-. ....+ ..|.|-||+..|.+|||||.|+
T Consensus 66 PHif~~a~~-A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQR-AYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHH-HHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhc-ccccccccccccceeeccccccccccch
Confidence 347765433 33343 3799999999999999999985
No 220
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=55.32 E-value=7.5 Score=44.44 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..+++|-| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3555678887 788899999999863
No 221
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.31 E-value=6e+02 Score=33.21 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=27.4
Q ss_pred hhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHHhh
Q 003179 571 TGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLCSM 609 (842)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (842)
..++..+.+|...++..-.++-+++.--.+-+.++-..+
T Consensus 719 ~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l 757 (1200)
T KOG0964|consen 719 KREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSL 757 (1200)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 457777788888888877787777777666666654433
No 222
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=55.30 E-value=9.8 Score=40.99 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=17.1
Q ss_pred cCCCeeEEeeccCCCCcccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|...-++-||++|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4544457889999999998763
No 223
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=55.12 E-value=5.2 Score=45.45 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=30.8
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..|.|+.|-+. +++= .-++..+.+..-+.|+-+|.+|||||+.+
T Consensus 12 ~~~pf~~ivGq----~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh----HHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 47899888764 4433 34445555544456889999999999986
No 224
>PRK13764 ATPase; Provisional
Probab=54.62 E-value=6.9 Score=47.50 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.2
Q ss_pred CCCeeEEeeccCCCCcccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.....|+..|+||||||+++.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHH
Confidence 334558999999999999985
No 225
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=54.47 E-value=73 Score=34.17 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhcccee
Q 003179 795 LEEEIKQFSVAFACRQKSLV 814 (842)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~ 814 (842)
.+..+.......+.|++.++
T Consensus 131 ~~~~l~~l~~~l~~~r~~l~ 150 (302)
T PF10186_consen 131 RKQRLSQLQSQLARRRRQLI 150 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555554443
No 226
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=54.45 E-value=11 Score=43.79 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHhcC----CCeeEEeeccCCCCcccccc
Q 003179 58 NARVYELLTKDIIHAAVEG----FNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 58 QeeVYe~v~~pLV~svL~G----yN~TIfAYGQTGSGKTyTM~ 96 (842)
....|.....-++.++.+- -..-|.-.||||.|||.|+-
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 3445555545555555544 26677788999999999974
No 227
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=54.43 E-value=8.1 Score=42.52 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=46.7
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHh---cCCC--eeEEeeccCCCCcccccc--------------CCC---CCCCh
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAV---EGFN--GTVFAYGQTSSGKTFTMN--------------GSA---DNPGV 104 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL---~GyN--~TIfAYGQTGSGKTyTM~--------------Gs~---~~~GI 104 (842)
.+..|=+-+..-++|-+.+--|+.+.-+ =|.+ -.|+.||+.|+|||-..- |+. .--|=
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc
Confidence 3344444455556777777667766655 2443 258999999999985432 211 11256
Q ss_pred HHhHHHHHHHHHHhc
Q 003179 105 ISLGVKDIFDAIQMM 119 (842)
Q Consensus 105 IPRal~dLF~~I~~~ 119 (842)
-||.++++|....+.
T Consensus 233 gprmvrdvfrlaken 247 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKEN 247 (408)
T ss_pred CcHHHHHHHHHHhcc
Confidence 699999999987654
No 228
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.00 E-value=6.5e+02 Score=33.16 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCcch--hhHHHHHHHHHHHHHHHHHHHHhh
Q 003179 523 PLNDGTPGCSNENY--RDVQKLKRQLENVTEEKNEFQRKY 560 (842)
Q Consensus 523 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 560 (842)
-+..-+-|.+..+| .++..|+.+-+-..++..+++..-
T Consensus 636 ksGlmsGG~s~~~wdek~~~~L~~~k~rl~eel~ei~~~~ 675 (1141)
T KOG0018|consen 636 KSGLMSGGSSGAKWDEKEVDQLKEKKERLLEELKEIQKRR 675 (1141)
T ss_pred ccceecCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444556666778 999999999999999999988743
No 229
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=53.83 E-value=10 Score=41.08 Aligned_cols=40 Identities=28% Similarity=0.270 Sum_probs=23.7
Q ss_pred CChHHHHHHHHHHHHHHHhc--CCCeeEEeeccCCCCcccccc
Q 003179 56 CSNARVYELLTKDIIHAAVE--GFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 56 asQeeVYe~v~~pLV~svL~--GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..|+++.+.+ ..++..... +....++-||++|+|||+...
T Consensus 7 iG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3466666553 233333322 222346779999999998764
No 230
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=53.63 E-value=54 Score=40.85 Aligned_cols=93 Identities=28% Similarity=0.318 Sum_probs=73.9
Q ss_pred HhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhh--hcc-----------------
Q 003179 709 EKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSE--SSQ----------------- 769 (842)
Q Consensus 709 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------- 769 (842)
+.|.+..+.+++..+.+|.+...-+.-+.+.|.|-..|-.+|--|.+||-||...||- ++|
T Consensus 58 ~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~ 137 (717)
T PF09730_consen 58 ERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEI 137 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3677777788888888888888888888888889889999999999999999888881 111
Q ss_pred -----------ccccch-hhHHhHhhhhhHHHHHHHhHHHHHHH
Q 003179 770 -----------TLTMVT-DQKENVLKDYNTEVEKKKNLEEEIKQ 801 (842)
Q Consensus 770 -----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (842)
+|.-|+ +|=|++|.-|.+|++.+-.|+.|+-+
T Consensus 138 ~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 138 ELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 36688899999999999999999988
No 231
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=52.90 E-value=9 Score=45.73 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCC--eeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVEGFN--GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~GyN--~TIfAYGQTGSGKTyTM~ 96 (842)
+..+...+.|.. ..++-+||+|+|||.|+-
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 556666665553 467889999999999973
No 232
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.82 E-value=7.5 Score=44.62 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=19.8
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+...+-.+.-..++-||++|+|||+...
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 3333345655577779999999998764
No 233
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=52.69 E-value=11 Score=40.99 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=17.7
Q ss_pred CCCeeEEeeccCCCCccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM 95 (842)
.-+.+|.-||+-|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56789999999999999865
No 234
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.91 E-value=6.6e+02 Score=32.65 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=45.0
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhh--hccccccchhhHHhHhhhhhHHHHHHHhHHHHHHHHHHHHHhhccc
Q 003179 735 FLETSKEMYDSLEREFRLLQEERDSLLNKVSE--SSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQFSVAFACRQKS 812 (842)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (842)
-+-.-+++...|-..+..++++..|+-...-. |...-+++-..+--.-|.+ -+.++.+|+++-++||.||-+
T Consensus 526 TI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~dyk~~fa~skay------araie~QlrqiEv~~a~rh~~ 599 (1243)
T KOG0971|consen 526 TIKKFRELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFDYKIKFAESKAY------ARAIEMQLRQIEVAQANRHMS 599 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888888877666543221 1112223333333333333 356888999999999999966
Q ss_pred e
Q 003179 813 L 813 (842)
Q Consensus 813 ~ 813 (842)
+
T Consensus 600 ~ 600 (1243)
T KOG0971|consen 600 L 600 (1243)
T ss_pred H
Confidence 4
No 235
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.73 E-value=6.6 Score=45.06 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=16.5
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
...|+-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578889999999999975
No 236
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=51.69 E-value=8.9 Score=43.77 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=18.8
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..++.|.|. ++-++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 34556789874 66779999999864
No 237
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=51.68 E-value=2e+02 Score=34.69 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=8.7
Q ss_pred EeeccCCCCccccc
Q 003179 82 FAYGQTSSGKTFTM 95 (842)
Q Consensus 82 fAYGQTGSGKTyTM 95 (842)
+-+|+||||||-.|
T Consensus 26 vitG~nGaGKS~ll 39 (563)
T TIGR00634 26 VLTGETGAGKSMII 39 (563)
T ss_pred EEECCCCCCHHHHH
Confidence 34577777776543
No 238
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=51.51 E-value=6.6 Score=46.14 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=29.2
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHH-Hhc--C--CCeeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHA-AVE--G--FNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~s-vL~--G--yN~TIfAYGQTGSGKTyTM~ 96 (842)
...+||.|.+.+.....+.+ ++..+... .+. | ..-.|+-||++|+|||+..-
T Consensus 50 ~~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 35778888776544333332 22211100 111 2 22358899999999999863
No 239
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=51.12 E-value=6.9 Score=40.08 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=15.1
Q ss_pred CCCeeEEeeccCCCCcccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..-..||..||.|||||+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 344578899999999998763
No 240
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.42 E-value=1.2e+02 Score=31.73 Aligned_cols=94 Identities=20% Similarity=0.210 Sum_probs=50.9
Q ss_pred HHhhhhHhhhcccCCCCcccCCCCC-CCCCCccchhhHH---HHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHH
Q 003179 670 LKSTISALILSEKAPIDNKQGKNSP-CSCNNKEEESTCW---KEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDS 745 (842)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (842)
.|..+.+|+- -.-|...++.++. ..|-+. .+.... -+.|..++..+..+...|+.++..-..--+++.+|- .
T Consensus 32 VKdvlq~LvD--DglV~~EKiGssn~YWsFps-~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~-~ 107 (188)
T PF03962_consen 32 VKDVLQSLVD--DGLVHVEKIGSSNYYWSFPS-QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEERE-E 107 (188)
T ss_pred HHHHHHHHhc--cccchhhhccCeeEEEecCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH-H
Confidence 3444444444 2344444444433 444443 222222 225666666666666666666666555555554443 3
Q ss_pred HHHHHHHHHHHhHHHHHHHhhh
Q 003179 746 LEREFRLLQEERDSLLNKVSES 767 (842)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~ 767 (842)
+..+++.|+.+...|..++.+.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777877777777643
No 241
>PRK04195 replication factor C large subunit; Provisional
Probab=50.25 E-value=8 Score=45.35 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=21.6
Q ss_pred HHHHHHHhcCC-CeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVEGF-NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~Gy-N~TIfAYGQTGSGKTyTM~ 96 (842)
..++.....|. ...++-||++|+|||++..
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 34455555554 4578899999999998863
No 242
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=50.13 E-value=2.1e+02 Score=27.53 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003179 371 ILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNH 416 (842)
Q Consensus 371 i~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l 416 (842)
...|+..+...+....++..+++-..-.+.++..++..+|..++..
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457777888888888999999888888888999999988888743
No 243
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.57 E-value=2e+02 Score=31.93 Aligned_cols=68 Identities=18% Similarity=0.351 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHHhhhh
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLCSMKS 611 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (842)
.+++.++.+++.+-....+++.+..+...=.+++-.+|.++++++..++ +.|..=.+.|++=+..|+.
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~-------~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK-------ENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554445555666666666665543 4666677888888777764
No 244
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=49.54 E-value=8 Score=38.11 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=17.9
Q ss_pred EEeeccCCCCccccccCCCCCCChHHhHHHHHHHH
Q 003179 81 VFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDA 115 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~ 115 (842)
+--.|+||+||||+- ..+.+.||..
T Consensus 56 lSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred EEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 445799999999974 2556666754
No 245
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=49.36 E-value=11 Score=43.69 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=19.5
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..+++|.| |++.++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3456678987 677789999999873
No 246
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=48.94 E-value=31 Score=36.99 Aligned_cols=56 Identities=32% Similarity=0.449 Sum_probs=46.4
Q ss_pred hhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 003179 711 LSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSE 766 (842)
Q Consensus 711 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (842)
|..+.++.+++...|++++..-.+-||...+..++|.+..+-+..|-|.|+++-++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~ 204 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSK 204 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 66778888888888899999888899999999998888888888888888766443
No 247
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=48.89 E-value=13 Score=45.54 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=21.6
Q ss_pred HHHHHHHHhc-----CCCeeEEeeccCCCCccccccC
Q 003179 66 TKDIIHAAVE-----GFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 66 ~~pLV~svL~-----GyN~TIfAYGQTGSGKTyTM~G 97 (842)
+..+++.+.. |.+..++.. +||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 4566777665 344555444 999999999973
No 248
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=48.89 E-value=11 Score=46.99 Aligned_cols=35 Identities=40% Similarity=0.526 Sum_probs=24.3
Q ss_pred CeeEEeeccCCCCccccc--------cCCC--CCCChH----HhHHHHH
Q 003179 78 NGTVFAYGQTSSGKTFTM--------NGSA--DNPGVI----SLGVKDI 112 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM--------~Gs~--~~~GII----PRal~dL 112 (842)
|-.|+.+|+||||||.-+ ||+. .++|+| ||-+..|
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAai 319 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAI 319 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHH
Confidence 456778899999999987 3433 347777 5555544
No 249
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=48.83 E-value=35 Score=39.12 Aligned_cols=125 Identities=22% Similarity=0.303 Sum_probs=72.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccCC-------CCC------CChHHh---HHHHHHHHH
Q 003179 53 EETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGS-------ADN------PGVISL---GVKDIFDAI 116 (842)
Q Consensus 53 ~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs-------~~~------~GIIPR---al~dLF~~I 116 (842)
+-...|..++.-+ -+.++.|-.-.|+-.|+.|||||+-+--- .++ .|.+.- |+..|-.++
T Consensus 28 g~~~~~~~l~~~l----kqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 28 GVQDEQKHLSELL----KQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred ehHHHHHHHHHHH----HHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 3334566666543 35567899999999999999999977431 111 266665 777777666
Q ss_pred HhccccceEEEEeeeee--------------------eccccccccccccc------cceeeecCCCceEecCcEEEEcC
Q 003179 117 QMMSNREFLVRVSYMEI--------------------YNEEINDLLAVENQ------KLQIHESLEHGVFVAGLREEIVN 170 (842)
Q Consensus 117 ~~~~~~ef~V~VSylEI--------------------YNE~V~DLL~~~~~------~L~IrEd~~~gv~V~gLtev~V~ 170 (842)
+..-.....+..||-|. +--.=+||..+... -+.+.++....+.|-|+ +
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~-----T 178 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV-----T 178 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe-----e
Confidence 54434444455555541 11122566654432 12344444455556554 4
Q ss_pred CHHHHHHHHhhccccc
Q 003179 171 SAEQVLKLIESGEVNR 186 (842)
Q Consensus 171 S~eE~l~lL~~G~~nR 186 (842)
+--+++.+|.+--+.|
T Consensus 179 trld~lE~LEKRVKSR 194 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSR 194 (408)
T ss_pred ccccHHHHHHHHHHhh
Confidence 5667777877655444
No 250
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.80 E-value=86 Score=33.02 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=75.7
Q ss_pred HHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhH
Q 003179 708 KEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNT 787 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (842)
...|.+.|+..+.+.-.|-.-+......+|..++|-+.|.+++.-|+.++.+|.-++++....=--|-+-|-.+-|.+-.
T Consensus 83 ~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~e 162 (203)
T KOG3433|consen 83 LQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAE 162 (203)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 55788999999999888888888888999999999999999999999999999999998877666666666555565555
Q ss_pred HHHHHHhHHHHHHHHHHHHHhh
Q 003179 788 EVEKKKNLEEEIKQFSVAFACR 809 (842)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~ 809 (842)
+.+|--|-= .+-++|+.|
T Consensus 163 aanrwtDnI----~il~dy~~r 180 (203)
T KOG3433|consen 163 AANRWTDNI----FILIDYLYR 180 (203)
T ss_pred HHhhhhhhH----HHHHHHHHH
Confidence 555543321 233556655
No 251
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=48.74 E-value=21 Score=44.07 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=29.6
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHH-HHhcCC----CeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIH-AAVEGF----NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~Gy----N~TIfAYGQTGSGKTyTM 95 (842)
..++||.|-+-+..-+.+.+.+..|+-. .++..+ ...|+-||++|+|||+.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 3477777765443333444444333221 112221 246899999999999775
No 252
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.67 E-value=7.6e+02 Score=32.43 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=24.5
Q ss_pred hhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHH
Q 003179 714 ELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDS 759 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (842)
+.+.|.-+-+.|++++..+.++|+.....+.+|+.++.-|.-.-+.
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555556666666666665555555555555544443333
No 253
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.66 E-value=1.2e+02 Score=33.68 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 370 EILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQ 414 (842)
Q Consensus 370 ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~ 414 (842)
++..+..+......+..++..++.+.+..+.+..+.|.+++..+.
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444555555555555544
No 254
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=48.54 E-value=12 Score=41.29 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.+++..++.+- ..|+-.|+||||||..|.
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 45566666544 456677999999999763
No 255
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=48.44 E-value=79 Score=28.08 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHHHHHHH
Q 003179 745 SLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQFSVA 805 (842)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (842)
.||.+...|+...|++-.+++..-..+..+......++..|......-.+|+.|+.....-
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677777777777766665555566666666666666666666666666554443
No 256
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=48.14 E-value=43 Score=31.68 Aligned_cols=40 Identities=38% Similarity=0.465 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhh
Q 003179 539 VQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELR 578 (842)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (842)
...||+||+-++||..=|-++..+.-.=|+.++.|+.+.+
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999888888888776653
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=48.08 E-value=7.5 Score=36.67 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.5
Q ss_pred EEeeccCCCCcccccc
Q 003179 81 VFAYGQTSSGKTFTMN 96 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~ 96 (842)
++-+|++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 5679999999999764
No 258
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=48.07 E-value=22 Score=38.46 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=26.8
Q ss_pred eCCCCChHHHHHHHHHHHHHHHhc-C-CCeeEEeeccCCCCcccc
Q 003179 52 FEETCSNARVYELLTKDIIHAAVE-G-FNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 52 F~~~asQeeVYe~v~~pLV~svL~-G-yN~TIfAYGQTGSGKTyT 94 (842)
|++-..|+.+-... +.++..+.. | .=..++-||++|.|||..
T Consensus 23 L~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 34445688888764 566777653 2 334588899999999864
No 259
>PF05729 NACHT: NACHT domain
Probab=47.90 E-value=8.7 Score=36.65 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.5
Q ss_pred eEEeeccCCCCcccccc
Q 003179 80 TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~ 96 (842)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 47889999999999774
No 260
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=47.86 E-value=11 Score=49.11 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
..+++.+-+|....++. .+||||||+||.+
T Consensus 423 ~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 423 QAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 33445555676654444 8999999999874
No 261
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.86 E-value=1e+02 Score=32.27 Aligned_cols=63 Identities=17% Similarity=0.389 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHHHH
Q 003179 739 SKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQF 802 (842)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (842)
.+.+++.|.+++..++.+...|..++... ..-.-.+..+..+|..|+.-..+.+.|+.|+..+
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443 2222233455555555555555555555555533
No 262
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=47.44 E-value=17 Score=40.64 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.7
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
...|.-.|++|+|||.|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3467778999999999974
No 263
>PRK10536 hypothetical protein; Provisional
Probab=47.09 E-value=11 Score=41.44 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=27.1
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 4666666665555544332 2233 3488999999999999753
No 264
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=47.06 E-value=14 Score=40.79 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 357889999999999875
No 265
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=47.03 E-value=4.7e+02 Score=29.50 Aligned_cols=242 Identities=19% Similarity=0.291 Sum_probs=144.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchh----HHHHHHHhhhhh
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESVVSSKD----FYEDLLCSMKSF 612 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 612 (842)
.++..++++.....-++..++..+..-+....+|...--||+..+..+++...+.+..--.-+. -|.+.|..|+..
T Consensus 43 k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~ 122 (309)
T PF09728_consen 43 KQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQ 122 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777778888888777888888888889999999999888877765444333 345555555655
Q ss_pred ccCCcchhhhhhhcccccccccch------hhhhhhhhccCCCCccCCCChhhhhHHHHHHHHHHhhhhHhhhcccCCCC
Q 003179 613 AADGESSTAKKLVSISEIGSSLFS------TLETNFLMAMDGDKSFSNNDSLVREQCKVFCEKLKSTISALILSEKAPID 686 (842)
Q Consensus 613 ~~~~~~~~~~~l~~~~~~~~~~~~------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (842)
+.....+-.+...--.++..-|=+ .=|.||...|-. +.- +..-.--||......+..
T Consensus 123 ~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~-keL---------E~Ql~~AKl~q~~~~~~~------- 185 (309)
T PF09728_consen 123 MEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQ-KEL---------EVQLAEAKLEQQQEEAEQ------- 185 (309)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHH---------HHHHHHHHHHHHHHHHHh-------
Confidence 544444433333222222221111 112222222110 000 000111111111100000
Q ss_pred cccCCCCCCCCCCcc---c---hhhHH--HH-hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHh
Q 003179 687 NKQGKNSPCSCNNKE---E---ESTCW--KE-KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEER 757 (842)
Q Consensus 687 ~~~~~~~~~~~~~~~---~---~~~~~--~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (842)
...+.. .++. . ....+ -| .|...|+.-.+||...+.-|.-.|......|.-.+.+-+.+.-|..|+
T Consensus 186 -e~~k~~----~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~ 260 (309)
T PF09728_consen 186 -EKEKAK----QEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKEN 260 (309)
T ss_pred -HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 0 01111 12 678889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHH
Q 003179 758 DSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIK 800 (842)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (842)
..+..+.-.+-..|.-.+..+....+++..-.....-|+.=++
T Consensus 261 ~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcR 303 (309)
T PF09728_consen 261 QTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCR 303 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887777777777777666666666655443
No 266
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.99 E-value=89 Score=38.17 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=10.9
Q ss_pred ChHHhHHHHHHHHHHh
Q 003179 103 GVISLGVKDIFDAIQM 118 (842)
Q Consensus 103 GIIPRal~dLF~~I~~ 118 (842)
|.|.+....|=+.+..
T Consensus 164 ~av~~~~reIee~L~~ 179 (652)
T COG2433 164 GAVKRVVREIEEKLDE 179 (652)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6777777777666653
No 267
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.99 E-value=1.9e+02 Score=36.71 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003179 539 VQKLKRQLENVTEEKNEFQRKYSEEK 564 (842)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (842)
+++|+++....+-+-.+++-++..++
T Consensus 673 ~e~lkQ~~~~l~~e~eeL~~~vq~~~ 698 (970)
T KOG0946|consen 673 IENLKQMEKELQVENEELEEEVQDFI 698 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 268
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.61 E-value=16 Score=46.94 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
+.+.-+|+||||||..|
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56778999999998654
No 269
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=46.61 E-value=18 Score=44.51 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 59 ARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 59 eeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
-.||.-.-.....-+-.|.|.||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 4467554333323333799999999999999999986
No 270
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=46.53 E-value=1.3e+02 Score=29.36 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=55.4
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHH
Q 003179 730 DLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEE 798 (842)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (842)
..+-+.|...|+.+..+..++.-|+.++++.-..+..+..... .+|..+-+++..-..|.++|...
T Consensus 55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~---~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 55 AEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWE---EQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999999999988777765 78888888888888888888754
No 271
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.23 E-value=14 Score=43.11 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+..++.|.++ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 345567889874 66679999999764
No 272
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=46.05 E-value=83 Score=31.94 Aligned_cols=49 Identities=29% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 342 AALLKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQL 390 (842)
Q Consensus 342 ~~li~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~ 390 (842)
....++++.|+.+|++++.......-=..-.|++.++.+.+.|.+++..
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNK 87 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999998855333222233444444444444444333
No 273
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=46.04 E-value=20 Score=39.48 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 55 TCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 55 ~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
...|.++-+. +.+.+-+|-+ ++.=.+||+|||.+.+
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 3346554443 4455567765 4566699999999864
No 274
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=46.04 E-value=20 Score=39.48 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 55 TCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 55 ~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
...|.++-+. +.+.+-+|-+ ++.=.+||+|||.+.+
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 3346554443 4455567765 4566699999999864
No 275
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=46.02 E-value=9.1 Score=37.77 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
+..+-||++|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56678999999999876
No 276
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=46.00 E-value=1.2e+02 Score=35.49 Aligned_cols=59 Identities=22% Similarity=0.346 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 343 ALLKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLELEEERRSRKER 402 (842)
Q Consensus 343 ~li~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~ 402 (842)
..|+.|+.||++||..+...+... ..++..++.+-...+.+.++++..|..+-..++.+
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~~-~ek~~qy~~Ee~~~reen~rlQrkL~~e~erReal 311 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKSY-QEKLMQYRAEEVDHREENERLQRKLINELERREAL 311 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999987643222 22233333333334445555555554444444333
No 277
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=45.81 E-value=14 Score=44.12 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=28.0
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
..||.+++.+.. ...+...++.+....|+-||++|+|||+.
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHH
Confidence 567888776422 22333344566677788899999999975
No 278
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=45.66 E-value=4.1e+02 Score=35.15 Aligned_cols=55 Identities=18% Similarity=0.075 Sum_probs=36.3
Q ss_pred HHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 003179 708 KEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLN 762 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (842)
..+|+-|+..++-+...++.++..+++..+-.+.+.+-+.++.+.+..+-..|.+
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~ 229 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRN 229 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478888888888888889888888777666665555444444444444333333
No 279
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=45.66 E-value=99 Score=37.80 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 383 LEREKLQLELEEERRSRKERDQCVREQ 409 (842)
Q Consensus 383 ~e~e~l~~elee~~~~~~e~e~~~~e~ 409 (842)
.++.+|..+|+++.+..++++..+.++
T Consensus 481 ~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 481 RRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444433
No 280
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=45.40 E-value=13 Score=45.35 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=15.0
Q ss_pred eEEeeccCCCCcccccc
Q 003179 80 TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~ 96 (842)
.++..|++|||||||+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46789999999999986
No 281
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=45.34 E-value=6.9e+02 Score=31.00 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=33.3
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHH---hHHHHHHH
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEE---RDSLLNKV 764 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 764 (842)
.|..|+..+.+++++..++-.....+...-++|...||+.++.++++ +.+||..+
T Consensus 91 ~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~l 148 (617)
T PF15070_consen 91 HLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQL 148 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556666666666655544444455556677777888777777654 55565543
No 282
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=45.23 E-value=4.2e+02 Score=28.40 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=23.1
Q ss_pred hhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 003179 720 EKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNK 763 (842)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (842)
.+|......|..-..-|+.+.+|.+.+|..+.-|.++-..+-+.
T Consensus 113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555554444433
No 283
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=45.21 E-value=14 Score=43.55 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=19.1
Q ss_pred cCCCcceeeeecCCCCcCchHhHHHHHHHHH
Q 003179 294 LGGNAKTSIICTIAPEEDHIEETKGTLQFAS 324 (842)
Q Consensus 294 LGGNskT~mIatISPs~~~~eETLsTLrFAs 324 (842)
+.-..+..+|||++..+.. +..|.+|-
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~Al 346 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYAL 346 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHH
Confidence 4557899999999988754 44555553
No 284
>PRK12704 phosphodiesterase; Provisional
Probab=45.10 E-value=1.6e+02 Score=35.40 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=53.1
Q ss_pred hhhhhhhhhHhhhhch---hhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhh
Q 003179 710 KLSSELNTIKEKYHGL---EKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYN 786 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (842)
.|..+...|..+-+.| +++|....+.|+.-++.++.++++++.+.+++..-|++++.-|+.- -|+.+++.+.
T Consensus 90 rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~e-----a~~~l~~~~~ 164 (520)
T PRK12704 90 RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEE-----AKEILLEKVE 164 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHH
Confidence 4555555454444443 4467777778888888888899999999999999999888766543 3667777766
Q ss_pred HHHH
Q 003179 787 TEVE 790 (842)
Q Consensus 787 ~~~~ 790 (842)
.+..
T Consensus 165 ~~~~ 168 (520)
T PRK12704 165 EEAR 168 (520)
T ss_pred HHHH
Confidence 6554
No 285
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=45.05 E-value=2.2e+02 Score=34.04 Aligned_cols=91 Identities=21% Similarity=0.357 Sum_probs=60.1
Q ss_pred HhhhhhhhhhHhhhhchhhhhh----------h----hhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhh---hcccc
Q 003179 709 EKLSSELNTIKEKYHGLEKDLD----------L----NNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSE---SSQTL 771 (842)
Q Consensus 709 ~~~~~~l~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 771 (842)
+++++-...+.|||.+|..+.- . ---.++..+.-++.-|.|+.+|++.+|+|--.|-+ |....
T Consensus 291 ~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~f 370 (622)
T COG5185 291 MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQF 370 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHH
Confidence 3677777777777776665432 1 12256677778888899999999999999877764 33344
Q ss_pred ccchhhHHhHhhhhhHHHHHHHhHHHHH
Q 003179 772 TMVTDQKENVLKDYNTEVEKKKNLEEEI 799 (842)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (842)
.....+||.+-++|+.=--..+.|-.+|
T Consensus 371 e~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 371 ELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4445677777777765444444454444
No 286
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.03 E-value=16 Score=43.13 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=26.2
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCCC-eeEEeeccCCCCcccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGFN-GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN-~TIfAYGQTGSGKTyTM~ 96 (842)
+||.|.++ +.+ ...+...+-.|.- ..++-||++|+|||++..
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 56676654 444 2233333334433 458899999999998763
No 287
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=44.80 E-value=13 Score=42.00 Aligned_cols=43 Identities=14% Similarity=0.365 Sum_probs=31.0
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
|.|..|.+ |+++ ...++-.+++..-+-|+-.|.+|+|||..+-
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 55666664 4433 3455667777777788999999999998763
No 288
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=44.71 E-value=71 Score=34.54 Aligned_cols=56 Identities=21% Similarity=0.396 Sum_probs=38.3
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHh
Q 003179 735 FLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKN 794 (842)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (842)
.++.-.-....+++|...|..||.+.++.|-.--++...+ |+++|++..|..|+++
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~l----E~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTL----ENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3333344556677888888888888888887766666533 6777777777666543
No 289
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=44.67 E-value=13 Score=40.59 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+++..+.. +--|+-.|++|+|||.++.
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 44444433 5567899999999998764
No 290
>PRK10865 protein disaggregation chaperone; Provisional
Probab=44.61 E-value=15 Score=46.50 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=26.4
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCCC------eeEEeeccCCCCccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGFN------GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN------~TIfAYGQTGSGKTyTM 95 (842)
-+.+|++.+ .+-..+... |..+..|.+ +.++-+|+||+|||++.
T Consensus 566 l~~~viGQ~----~ai~~l~~~-i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 566 LHHRVIGQN----EAVEAVSNA-IRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred hCCeEeCCH----HHHHHHHHH-HHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 456777654 333333322 233333332 57888899999999975
No 291
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=44.59 E-value=7.3 Score=42.79 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=18.0
Q ss_pred cCCCeeEEeeccCCCCcccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyT 94 (842)
.|++-+||..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 48899999999999999964
No 292
>PHA02244 ATPase-like protein
Probab=44.49 E-value=22 Score=41.01 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=26.3
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
...||.-|-.. ...+......+...+-.|.+ |+-+|+||+|||+..
T Consensus 91 l~~~d~~~ig~---sp~~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 91 ISGIDTTKIAS---NPTFHYETADIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred hhhCCCcccCC---CHHHHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 34555555433 22333333344444445665 455899999999875
No 293
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.23 E-value=25 Score=41.22 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=16.3
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
...|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578889999999999964
No 294
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=44.12 E-value=1.2e+02 Score=32.77 Aligned_cols=54 Identities=35% Similarity=0.404 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 347 RQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLELEEERRSRKER 402 (842)
Q Consensus 347 ~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~ 402 (842)
..+++...+++.+..... ++.+..++.++..+.+.+.++...+++..+.....+
T Consensus 131 ~~~~~~~~lk~~~~~~~~--~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al 184 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSK--LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDAL 184 (216)
T ss_pred HHHHHHHHHHHhhhcccc--hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777766443 444445555555555555555555554444433333
No 295
>PRK14974 cell division protein FtsY; Provisional
Probab=44.03 E-value=28 Score=39.44 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=16.5
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
...|.-.|++|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4678899999999999974
No 296
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.96 E-value=1.1e+03 Score=33.15 Aligned_cols=73 Identities=27% Similarity=0.298 Sum_probs=39.6
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHH-HhHHHHHHHH
Q 003179 726 EKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKK-KNLEEEIKQF 802 (842)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 802 (842)
+..+..-.+.||.-+.....+||.++-|..|-..|-..+.+..+.+. .+.++=+-...|++++ .+|+++...+
T Consensus 1103 ~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~----~q~e~~~k~e~e~~~l~~~leee~~~~ 1176 (1930)
T KOG0161|consen 1103 EARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTA----AQLELNKKREAEVQKLRRDLEEETLDH 1176 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333444455555666666777777777777766666666633332 3344444455555553 3455554443
No 297
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=43.69 E-value=1.9e+02 Score=28.33 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 003179 401 ERDQCVREQQMRLQNHNSLV 420 (842)
Q Consensus 401 e~e~~~~e~q~~i~~l~~~v 420 (842)
|..+.+.|++..+.++..+.
T Consensus 93 EK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 93 EKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665554
No 298
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.46 E-value=11 Score=44.60 Aligned_cols=22 Identities=36% Similarity=0.243 Sum_probs=17.6
Q ss_pred hcCCCeeEEeeccCCCCccccccC
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
.+|.+. +|++|||||||+...+
T Consensus 109 ~~Grdl--~acAqTGsGKT~aFLi 130 (482)
T KOG0335|consen 109 SGGRDL--MACAQTGSGKTAAFLI 130 (482)
T ss_pred ecCCce--EEEccCCCcchHHHHH
Confidence 445554 8999999999998866
No 299
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=43.45 E-value=11 Score=43.51 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=26.7
Q ss_pred eEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeecc
Q 003179 80 TVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNE 136 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE 136 (842)
-|+-||.+||||||++ +.+|+.. ..-.|+++.+|-|.=
T Consensus 32 ~~~iyG~sgTGKT~~~--------------r~~l~~~-----n~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV--------------RQLLRKL-----NLENVWLNCVECFTY 69 (438)
T ss_pred eEEEeccCCCchhHHH--------------HHHHhhc-----CCcceeeehHHhccH
Confidence 4689999999999975 3455543 223478888887754
No 300
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.43 E-value=1.3e+02 Score=29.79 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=54.3
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHHHHHHH
Q 003179 726 EKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQFSVA 805 (842)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (842)
-..-..+....|+.......++.+...|+.....|-.++.++-..+..+...--.+-+.+..+....+..++|+...-..
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666777777777666666667766666666554444555566666666777777777666666
Q ss_pred HHhhcc
Q 003179 806 FACRQK 811 (842)
Q Consensus 806 ~~~~~~ 811 (842)
+..+.-
T Consensus 124 ~~~~~t 129 (151)
T PF11559_consen 124 LQQRKT 129 (151)
T ss_pred HHHHHH
Confidence 665544
No 301
>PRK04328 hypothetical protein; Provisional
Probab=43.28 E-value=17 Score=38.97 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=22.6
Q ss_pred HHHHHHHhcC---CCeeEEeeccCCCCcccc
Q 003179 67 KDIIHAAVEG---FNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 67 ~pLV~svL~G---yN~TIfAYGQTGSGKTyT 94 (842)
-+-++.++.| ...+++-+|++|||||.-
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 3557888876 588899999999999853
No 302
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.16 E-value=11 Score=42.81 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=13.7
Q ss_pred eeEEeeccCCCCcccc
Q 003179 79 GTVFAYGQTSSGKTFT 94 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyT 94 (842)
+-|+..|+||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 4589999999999973
No 303
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.07 E-value=6.2e+02 Score=29.76 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEK 564 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (842)
..++.+..+|....+....|+.+|+...
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLK 239 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666655555544
No 304
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=43.04 E-value=28 Score=39.31 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..++..++.+. +.|+..|.||||||.+|.
T Consensus 168 ~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 168 ARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 45666666654 688889999999998764
No 305
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=42.97 E-value=21 Score=38.41 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..++..+..|.+ |+-+|++|+|||...
T Consensus 12 ~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 344555556654 456899999999864
No 306
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=42.85 E-value=23 Score=43.65 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 60 RVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 60 eVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
.||.-. .....+++ .|.|.||+.-|.+|||||.|.
T Consensus 70 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFAIA-DAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 366543 23333333 699999999999999999986
No 307
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.77 E-value=1.9e+02 Score=32.47 Aligned_cols=9 Identities=44% Similarity=0.726 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 003179 352 IEELRRKLQ 360 (842)
Q Consensus 352 I~~Lr~~L~ 360 (842)
|..||.+|.
T Consensus 70 iRHLkakLk 78 (305)
T PF15290_consen 70 IRHLKAKLK 78 (305)
T ss_pred HHHHHHHHH
Confidence 334444443
No 308
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=42.61 E-value=1.6e+02 Score=34.76 Aligned_cols=104 Identities=22% Similarity=0.317 Sum_probs=69.9
Q ss_pred HHhhhhhhhh---hHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhh
Q 003179 708 KEKLSSELNT---IKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKD 784 (842)
Q Consensus 708 ~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (842)
.++++.++.. +.+.|++-+..|+..++.. .+..+-.|.+-|++|...|+|.+-++-. +-..+-.+
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~-----~~~~~~~e~~~l~~eE~~L~q~lk~le~-------~~~~l~~~ 212 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV-----SEEDLLKELKNLKEEEERLLQQLEELEK-------EEAELDHQ 212 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 5566666553 3344555444444444433 4566778888899999999988765432 22333444
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhhccceeeehhhhHHH
Q 003179 785 YNTEVEKKKNLEEEIKQFSVAFACRQKSLVSFHSDLKSK 823 (842)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (842)
|-+...|+..+.++--++..-|-.-+++++-+..++.|.
T Consensus 213 l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sl 251 (447)
T KOG2751|consen 213 LKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSL 251 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 555566677788888999999999999999888877663
No 309
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.55 E-value=16 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=17.9
Q ss_pred cCCCeeEEeeccCCCCcccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|.-..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4555578889999999999874
No 310
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=42.21 E-value=26 Score=43.28 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 60 RVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 60 eVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
.||... ......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAIA-DTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 466543 33444444 699999999999999999986
No 311
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=42.14 E-value=18 Score=40.16 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.2
Q ss_pred HhcCCCeeEEeeccCCCCcccccc
Q 003179 73 AVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 73 vL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
--.+-+.-++-||+.|||||.+|.
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHH
Confidence 345677789999999999999986
No 312
>PF13173 AAA_14: AAA domain
Probab=42.05 E-value=12 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
-.++-+|+.|+|||+.|.
T Consensus 3 ~~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLK 20 (128)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357889999999999874
No 313
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=41.83 E-value=11 Score=42.66 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=39.2
Q ss_pred EEeeccCCCCccccccC---C-------------CCCCChHHhHHHHHHH--HHHhc----ccc----------ceEEEE
Q 003179 81 VFAYGQTSSGKTFTMNG---S-------------ADNPGVISLGVKDIFD--AIQMM----SNR----------EFLVRV 128 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~G---s-------------~~~~GIIPRal~dLF~--~I~~~----~~~----------ef~V~V 128 (842)
...||+|||||++-+-. . ..+.|.||--=...++ ..+.. ++. --.|.+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~m 169 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVEM 169 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccccccceee
Confidence 46799999999997742 1 1245888854333333 22211 111 113677
Q ss_pred eeeeeecccccccccccc
Q 003179 129 SYMEIYNEEINDLLAVEN 146 (842)
Q Consensus 129 SylEIYNE~V~DLL~~~~ 146 (842)
||=|.-.+.-+|.=+|.+
T Consensus 170 sy~e~t~~~NldI~~p~N 187 (369)
T PF02456_consen 170 SYDEATSPENLDITNPNN 187 (369)
T ss_pred cHhhhCCccccCCCCchH
Confidence 777777777777776654
No 314
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.81 E-value=15 Score=41.02 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.1
Q ss_pred HHhcCCCeeEEeeccCCCCccccc
Q 003179 72 AAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 72 svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++-+||..-|++.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 455899999999999999999765
No 315
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=41.79 E-value=14 Score=38.30 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=22.8
Q ss_pred HHHHHHHhcC---CCeeEEeeccCCCCccccc
Q 003179 67 KDIIHAAVEG---FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 67 ~pLV~svL~G---yN~TIfAYGQTGSGKTyTM 95 (842)
-+-++.++.| ....+.-+|++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3557778875 4567899999999999865
No 316
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=41.71 E-value=28 Score=39.94 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=26.0
Q ss_pred ec-EeeCCCCChHHHHHHHHHHHHHHHhcC---CCeeEEeeccCCCCcccc
Q 003179 48 FD-HVFEETCSNARVYELLTKDIIHAAVEG---FNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 48 FD-~VF~~~asQeeVYe~v~~pLV~svL~G---yN~TIfAYGQTGSGKTyT 94 (842)
|| .||+. ++.-+.++. .+.....| -+-.+.-.|++|||||..
T Consensus 49 F~~~~~G~----~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 49 FDHDFFGM----EEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred cchhccCc----HHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 44 67764 444555443 33333444 345678899999999864
No 317
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=41.70 E-value=16 Score=44.67 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=19.4
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455678876 688889999999874
No 318
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=41.49 E-value=25 Score=43.32 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 59 ARVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 59 eeVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
-.||.-+ ......++ .|.|.||+.-|.+|||||.+.
T Consensus 67 PHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIA-DRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 3466543 44455555 699999999999999999986
No 319
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.41 E-value=2e+02 Score=32.29 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003179 369 QEILKLRNDMLKYELERE-------KLQLELEEERRSRKERDQCVREQQMRLQNHNSLV 420 (842)
Q Consensus 369 ~ei~kLr~~~~~~e~e~e-------~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~v 420 (842)
.++..+++++.....+.+ +++.+++......++......+++..|.++....
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444 3334444444444444445555555555554433
No 320
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=41.15 E-value=58 Score=35.23 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=41.3
Q ss_pred hhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccc
Q 003179 714 ELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQT 770 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (842)
.|+...++...|-++++....-++..++|...||.|.-.|.++++-|..+++.-..+
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r 199 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKR 199 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 344444455566667777777788888888888888888888888888777654433
No 321
>CHL00176 ftsH cell division protein; Validated
Probab=41.11 E-value=12 Score=45.66 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999886
No 322
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=41.06 E-value=15 Score=37.39 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.5
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
...+.-||++|||||...
T Consensus 12 g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNIC 29 (209)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999764
No 323
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=41.03 E-value=42 Score=31.55 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=19.2
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 003179 732 NNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSES 767 (842)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (842)
+-..|+..-..-..+=.++..+...|..++.++...
T Consensus 35 d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~ 70 (143)
T PF05130_consen 35 DIDELEELVEEKQELLEELRELEKQRQQLLAKLGAE 70 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 334455555555555556666666666666655544
No 324
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.02 E-value=84 Score=33.41 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=32.6
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhcc
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQ 769 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (842)
.|+.+|..++.++..+..+.. +...+..+..+..+.....|++|++.|.+++.....
T Consensus 97 ~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444422 444444556666666666677777777777666433
No 325
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=40.99 E-value=2.4e+02 Score=28.29 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=48.9
Q ss_pred hhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc--c-------chhhHHhHhhhhhHHHHH-
Q 003179 722 YHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT--M-------VTDQKENVLKDYNTEVEK- 791 (842)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~- 791 (842)
.+....++..-.+..+++.+..+..++.+...+.|...+++..-+..+... + ....++.+-+++..|.++
T Consensus 55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a 134 (156)
T CHL00118 55 KEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKA 134 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555555555666666666666666666666655443332221 0 002334555566666555
Q ss_pred HHhHHHHHHHHHHHHHhh
Q 003179 792 KKNLEEEIKQFSVAFACR 809 (842)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~ 809 (842)
+.+|..++-.++...|.+
T Consensus 135 ~~~l~~~v~~lA~~ia~k 152 (156)
T CHL00118 135 LKSLEEQVDTLSDQIEEK 152 (156)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788888888887754
No 326
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=40.91 E-value=26 Score=43.38 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCcccccc
Q 003179 59 ARVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 59 eeVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
-.||.-. ......++ .|.|-||+.-|.+|||||.|.-
T Consensus 75 PHiy~iA-~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 75 PHIFAIA-DVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 3466533 33344443 6899999999999999999863
No 327
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=40.89 E-value=27 Score=43.03 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCcccccc
Q 003179 60 RVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 60 eVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.||... ......++ .|.|-||+.-|.+|||||.|.-
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 104 (671)
T cd01381 68 HIFAIS-DNAYTNMQREKKNQCIIISGESGAGKTESTK 104 (671)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCeehHHH
Confidence 466533 33344444 6999999999999999999863
No 328
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=40.77 E-value=12 Score=36.12 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+-.|.+|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999863
No 329
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=40.72 E-value=19 Score=40.62 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.2
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++.+.+|.+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 44557888888888999999999874
No 330
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.67 E-value=12 Score=43.53 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..|+-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 367777999999999975
No 331
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=40.64 E-value=27 Score=43.12 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCcccccc
Q 003179 60 RVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 60 eVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.||.-+ ......++ .|.|-||+.-|.+|||||.|.-
T Consensus 68 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 104 (674)
T cd01378 68 HIYALA-DNAYRSMKSENENQCVIISGESGAGKTEAAK 104 (674)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCcchHHH
Confidence 366543 33334444 6999999999999999999863
No 332
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.62 E-value=3.4e+02 Score=29.81 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=53.9
Q ss_pred hhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhh-------------------HHH
Q 003179 729 LDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYN-------------------TEV 789 (842)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 789 (842)
+...-+.++.||++|+..-+|.+-++.++-+ -.+|.+...++..-...=++.+..|| .|.
T Consensus 125 ~~~~~~~~~KaK~~Y~~~c~e~e~~~~~~~t-~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee 203 (269)
T cd07673 125 IQSITQALQKSKENYNAKCLEQERLKKEGAT-QREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEE 203 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577888888888888887766543321 22222222222221222244445554 344
Q ss_pred HHHHhHHHHHHHHHHHHHhhccceeeehhhhHHHHHhhhh
Q 003179 790 EKKKNLEEEIKQFSVAFACRQKSLVSFHSDLKSKIEKLRA 829 (842)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (842)
.|..-|++=+-.++.+...=.-++-..|.+++..||+|-.
T Consensus 204 ~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~d~ 243 (269)
T cd07673 204 THLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANTTV 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCH
Confidence 5555555556666665554445555667777766666543
No 333
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=40.44 E-value=13 Score=37.05 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=12.7
Q ss_pred EEeeccCCCCcccc
Q 003179 81 VFAYGQTSSGKTFT 94 (842)
Q Consensus 81 IfAYGQTGSGKTyT 94 (842)
|+.+|++|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999985
No 334
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=40.35 E-value=7.6e+02 Score=30.02 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--------hhHHHH-HhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHH
Q 003179 537 RDVQKLKRQLENVTEEKNEFQR--------KYSEEK-ILNARLTGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLC 607 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (842)
.+++.++.+++.......++.- ...+.| .|-..+..|+.-.+.=...+..++..+-.--.+++....++=-
T Consensus 252 ~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~ 331 (560)
T PF06160_consen 252 EEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELER 331 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677666666555444321 122222 2333333333333333333444444444445555555555555
Q ss_pred hhhhhc-cCCcchhhhhhhcccccccccchhhhhhhhhccCCCCccCCCChhhhhHHHHHHHHH
Q 003179 608 SMKSFA-ADGESSTAKKLVSISEIGSSLFSTLETNFLMAMDGDKSFSNNDSLVREQCKVFCEKL 670 (842)
Q Consensus 608 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (842)
.-++|. .+++....+.|. .=+..|+..|-...+........-|.+.+.++.+-++|
T Consensus 332 v~~sY~L~~~e~~~~~~l~-------~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l 388 (560)
T PF06160_consen 332 VSQSYTLNHNELEIVRELE-------KQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQL 388 (560)
T ss_pred HHHhcCCCchHHHHHHHHH-------HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Confidence 556666 445544444441 12234444444444333333333344444444444444
No 335
>PRK00131 aroK shikimate kinase; Reviewed
Probab=40.12 E-value=14 Score=35.97 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
-.|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999864
No 336
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=40.11 E-value=31 Score=36.20 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhc-CCCeeEEeeccCCCCccccc
Q 003179 59 ARVYELLTKDIIHAAVE-GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 59 eeVYe~v~~pLV~svL~-GyN~TIfAYGQTGSGKTyTM 95 (842)
..+|..++..+...+-. |..-.|.-.|++|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34555555444333333 44556677799999999865
No 337
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=40.10 E-value=25 Score=43.65 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 60 RVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 60 eVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
.||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAIA-DKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHHH-HHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 366533 33344444 799999999999999999986
No 338
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=40.08 E-value=28 Score=43.05 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 60 RVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 60 eVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
.||... ......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 HifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFAIA-NLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 466543 33344444 799999999999999999986
No 339
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=40.02 E-value=13 Score=40.45 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.9
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM 95 (842)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999764
No 340
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=39.84 E-value=30 Score=39.79 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=22.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
.+|..+++|.+| +....||||||..+-+
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaL 63 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFAL 63 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhH
Confidence 456778899998 5667999999998765
No 341
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=39.68 E-value=1.5e+02 Score=32.43 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHH
Q 003179 546 LENVTEEKNEFQRKYSEEKILNARLTGEISELRQEV 581 (842)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (842)
|+.+.++..+++.+..++..|+.+|...+...+.+.
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~ 36 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASS 36 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456667777788888888888888887777766553
No 342
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=39.59 E-value=28 Score=43.17 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 59 ARVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 59 eeVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
-.||... ......++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHiyaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIA-DNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 4477543 34444444 699999999999999999986
No 343
>PRK05580 primosome assembly protein PriA; Validated
Probab=39.51 E-value=13 Score=45.83 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..++.+|+||||||.+.+
T Consensus 163 ~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CcEEEECCCCChHHHHHH
Confidence 458999999999998753
No 344
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=39.49 E-value=11 Score=40.14 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.0
Q ss_pred CeeEEeeccCCCCccccccC
Q 003179 78 NGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~G 97 (842)
...++-||++|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45699999999999998754
No 345
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=39.49 E-value=3.2e+02 Score=28.59 Aligned_cols=78 Identities=24% Similarity=0.352 Sum_probs=51.9
Q ss_pred HHhhhhhhhhhHhhhhchhh---hhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhh
Q 003179 708 KEKLSSELNTIKEKYHGLEK---DLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKD 784 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (842)
.+.|.++-..|..+...|++ +|....+.|...+...+..+.++.-+..+...-|.++|.-|+.= -|+.+|+.
T Consensus 84 E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eE-----Ak~~Ll~~ 158 (201)
T PF12072_consen 84 EKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLTAEE-----AKEILLEK 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHH
Confidence 33555555555555444443 66666667777777777888888888888888888888766543 36777777
Q ss_pred hhHHHH
Q 003179 785 YNTEVE 790 (842)
Q Consensus 785 ~~~~~~ 790 (842)
+..+..
T Consensus 159 le~e~~ 164 (201)
T PF12072_consen 159 LEEEAR 164 (201)
T ss_pred HHHHHH
Confidence 766654
No 346
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.19 E-value=2.3e+02 Score=34.13 Aligned_cols=76 Identities=26% Similarity=0.343 Sum_probs=50.6
Q ss_pred hhhhhhhhhHhhhhch---hhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhh
Q 003179 710 KLSSELNTIKEKYHGL---EKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYN 786 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (842)
.|..+...|..+-..| +++|....+.|+.-++.++.++.++..+..++..-|++++.-|+.- -|+.+++.+.
T Consensus 84 rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~e-----ak~~l~~~~~ 158 (514)
T TIGR03319 84 RLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEE-----AKEILLEEVE 158 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHH
Confidence 4444544444443333 4466667777777778888888888888888888888888665542 3677777776
Q ss_pred HHHH
Q 003179 787 TEVE 790 (842)
Q Consensus 787 ~~~~ 790 (842)
.+..
T Consensus 159 ~~~~ 162 (514)
T TIGR03319 159 EEAR 162 (514)
T ss_pred HHHH
Confidence 6543
No 347
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.06 E-value=17 Score=43.74 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.3
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3456789988 566779999999764
No 348
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.79 E-value=2.5e+02 Score=32.03 Aligned_cols=98 Identities=17% Similarity=0.330 Sum_probs=0.0
Q ss_pred hHHHH--hhhhhhhhhHhhhhchhhhhhhhh---------------------hhHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 003179 705 TCWKE--KLSSELNTIKEKYHGLEKDLDLNN---------------------KFLETSKEMYDSLEREFRLLQEERDSLL 761 (842)
Q Consensus 705 ~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (842)
.|-.| .|+--.++|.+.|++|.+.+.... ++|.+++++-..|..|+.-|+..-..+.
T Consensus 20 ~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 20 KCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ------------HHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHHHH
Q 003179 762 ------------NKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQF 802 (842)
Q Consensus 762 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (842)
+++....-....-.++++.++.+|..-..+-..|+.|++..
T Consensus 100 GD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 100 GDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred chHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
No 349
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=38.75 E-value=18 Score=42.90 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=31.4
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+.||.+++.+..-..+.+.+ ..+ ...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~-----~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQA-----RVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHHH-----HHH-hCcCCCEEEECCCCccHHHHH
Confidence 378899888764444444433 222 367888999999999999753
No 350
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=38.37 E-value=9.2e+02 Score=30.45 Aligned_cols=118 Identities=21% Similarity=0.197 Sum_probs=77.1
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHH
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEV 789 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (842)
+|.-++..+...-..+.+++..-.|.+|..+-.-..+.+.++.|+.+-+..-.++-.....++ ..--.|..+.
T Consensus 528 ~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~-------e~~~ele~~~ 600 (698)
T KOG0978|consen 528 KLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA-------ELELELEIEK 600 (698)
T ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 334444444555556678888888888888888888888888888777766666655444333 2334566778
Q ss_pred HHHHhHHHHHHHHHHHHHhhccceee---ehhhhHHHHHhhhhcCCccc
Q 003179 790 EKKKNLEEEIKQFSVAFACRQKSLVS---FHSDLKSKIEKLRAQNPVSV 835 (842)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 835 (842)
..++-|++|+..+..-. .|.+...+ ---.+---+.++|+---|++
T Consensus 601 ~k~~rleEE~e~L~~kl-e~~k~~~~~~s~d~~L~EElk~yK~~LkCs~ 648 (698)
T KOG0978|consen 601 FKRKRLEEELERLKRKL-ERLKKEESGASADEVLAEELKEYKELLKCSV 648 (698)
T ss_pred HHHHHHHHHHHHHHHHH-HHhccccccccccHHHHHHHHHHHhceeCCC
Confidence 88889999998887643 34444444 33344556667777664443
No 351
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=38.28 E-value=2e+02 Score=29.44 Aligned_cols=77 Identities=22% Similarity=0.328 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHH----HHHHHHHHHhhccceeeeh
Q 003179 742 MYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEE----IKQFSVAFACRQKSLVSFH 817 (842)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 817 (842)
..+.|..+.+.|+.|-+.|-+++.+-..++. -++--|+|.+..|.++.... |......+.. .+
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~------a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~------ei- 140 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEINKLR------AEVKLDLNLEKGRIREEQAKQELKIQELNNKIDT------EI- 140 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HH-
Confidence 3455555666666666666666665555444 45666788887776554433 3333222221 11
Q ss_pred hhhHHHHHhhhhcC
Q 003179 818 SDLKSKIEKLRAQN 831 (842)
Q Consensus 818 ~~~~~~~~~~~~~~ 831 (842)
..+++.||..|.+.
T Consensus 141 ~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 141 ANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 35777777766543
No 352
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=38.14 E-value=2.1e+02 Score=26.13 Aligned_cols=75 Identities=19% Similarity=0.358 Sum_probs=56.0
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHh-HHHHHHHHHHHHHhhcc
Q 003179 733 NKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKN-LEEEIKQFSVAFACRQK 811 (842)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 811 (842)
+.+|+..|.-|+++-++...+|..+|.+-.++..-.+.+.++ .+.+-+|+..-.++|. -|+||..+-.-.-.|.+
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~i----r~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~~ 78 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQI----RQKVYELEQAHRKMKQQYEEEIARLRRELEQRGR 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 456778888888888888888888888888888777777655 3556777777666664 58889888776666654
No 353
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=38.06 E-value=13 Score=44.45 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=13.8
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999864
No 354
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=38.06 E-value=24 Score=41.79 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+..++.|.|. ++..+||||||.+.
T Consensus 150 ~aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCCE--EEEecCCCCccHHH
Confidence 345667788874 66779999999763
No 355
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=37.99 E-value=46 Score=41.26 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=33.9
Q ss_pred CcccCCCCccccccccccCCCc-----cee----eeecCCCCcCchHhHHHHHHHHHHhhcccccce
Q 003179 277 GHIPYRDSKLTRILQPALGGNA-----KTS----IICTIAPEEDHIEETKGTLQFASRAKRITNCVQ 334 (842)
Q Consensus 277 ~hIPYRDSKLTrLLqDSLGGNs-----kT~----mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~ 334 (842)
.+-||-..-|-.++..-|.|-. -+= =||.||. ++-..|.++.||..|.-...
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG------DaRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG------DARRALDICRRAAEIAEERN 632 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhhhc
Confidence 4678888888888888887740 000 1345553 45678889999988864433
No 356
>CHL00181 cbbX CbbX; Provisional
Probab=37.63 E-value=34 Score=37.70 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=13.3
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999874
No 357
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=37.62 E-value=8.1e+02 Score=29.60 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=8.1
Q ss_pred HHHHHHHHhHHHHHHHhhh
Q 003179 749 EFRLLQEERDSLLNKVSES 767 (842)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~ 767 (842)
++..|+.+.+.+.+++.+.
T Consensus 347 ~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 358
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.45 E-value=8.7e+02 Score=29.89 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
+++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999876
No 359
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=37.44 E-value=17 Score=41.16 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=14.0
Q ss_pred EEeeccCCCCcccccc
Q 003179 81 VFAYGQTSSGKTFTMN 96 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~ 96 (842)
++.+|+||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999874
No 360
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=37.31 E-value=15 Score=35.19 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
+|+.+|.+|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999864
No 361
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=37.21 E-value=32 Score=42.59 Aligned_cols=35 Identities=14% Similarity=0.403 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 60 RVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 60 eVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
.||.-. ......++ .|.|-||+.-|.+|||||.+.
T Consensus 68 HifaiA-~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAIA-EEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 366443 33334444 799999999999999999986
No 362
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=37.20 E-value=15 Score=31.86 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=12.6
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999765
No 363
>PHA02653 RNA helicase NPH-II; Provisional
Probab=37.06 E-value=29 Score=42.89 Aligned_cols=32 Identities=28% Similarity=0.159 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 57 sQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
-|.+|-+. ++..+++|.+ |+..|+||||||..
T Consensus 164 ~~~~iQ~q----il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 164 LQPDVQLK----IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred hhHHHHHH----HHHHHHhCCC--EEEECCCCCCchhH
Confidence 45555544 4555667765 58899999999964
No 364
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=36.85 E-value=16 Score=42.53 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=29.2
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
+||.|+ .|+.+... .+++-.-+-.|-=.+.+-||+.|+|||..
T Consensus 22 ~lde~v----GQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVV----GQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhc----ChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 345554 35655544 34555555567778888999999999974
No 365
>PRK07261 topology modulation protein; Provisional
Probab=36.85 E-value=15 Score=36.93 Aligned_cols=15 Identities=27% Similarity=0.343 Sum_probs=12.8
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999754
No 366
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.84 E-value=2e+02 Score=28.30 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=25.5
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 003179 730 DLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSE 766 (842)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (842)
...+..+.....+...|+.++.-|...-+.+|+-+-+
T Consensus 57 ~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 57 MEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455666677778888888888887877776644
No 367
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=36.78 E-value=16 Score=36.53 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+.+|++|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998654
No 368
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.75 E-value=35 Score=42.76 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.9
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
.+|.-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 578889999999999984
No 369
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=36.70 E-value=29 Score=38.22 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=17.7
Q ss_pred HhcC-CCeeEEeeccCCCCccccc
Q 003179 73 AVEG-FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 73 vL~G-yN~TIfAYGQTGSGKTyTM 95 (842)
+-.| +...++-||+.|+|||.+.
T Consensus 30 ~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 30 IKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHH
Confidence 3344 4557899999999999875
No 370
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=36.56 E-value=25 Score=36.80 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=21.8
Q ss_pred HHHHHHHhcCC---CeeEEeeccCCCCccccc
Q 003179 67 KDIIHAAVEGF---NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 67 ~pLV~svL~Gy---N~TIfAYGQTGSGKTyTM 95 (842)
-+-++.++.|= ..+++.+|.+|||||+-.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 35567777542 667888899999998754
No 371
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=36.49 E-value=35 Score=42.92 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=27.7
Q ss_pred HHHHH-HHHHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 61 VYELL-TKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 61 VYe~v-~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
-|+.. +..+++++-+|.+-.+++. .||||||+|-+-
T Consensus 168 yyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 168 YYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 34433 4778889999999966655 799999999763
No 372
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=36.45 E-value=7.5e+02 Score=31.08 Aligned_cols=203 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH-HhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHHhh--------
Q 003179 539 VQKLKRQLENVTEEKNEFQRKYSEEK-ILNARLTGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLCSM-------- 609 (842)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 609 (842)
+..+|.|+|.|+| |+|.. ..=.-+..||.++-+...-|+|.=+.=.-.-.-=.-.++.++..|
T Consensus 111 L~~vK~qveiAmE--------~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~ 182 (683)
T PF08580_consen 111 LISVKKQVEIAME--------WEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSN 182 (683)
T ss_pred HHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCc
Q ss_pred -----hhhccCCcc---hhhhhhhcccccccccchhhhhhhhhccCCCCccCCCChhhhhHHHHHHHHHHhhhhHhhhcc
Q 003179 610 -----KSFAADGES---STAKKLVSISEIGSSLFSTLETNFLMAMDGDKSFSNNDSLVREQCKVFCEKLKSTISALILSE 681 (842)
Q Consensus 610 -----~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (842)
-.|-|.+|+ .--.+-..+.=|-.+| .-|=.+-.| ...+|+..
T Consensus 183 ~~~~lPtF~~~Desl~~~ll~L~arm~PLraSL-dfLP~Ri~~------------------F~~ra~~~----------- 232 (683)
T PF08580_consen 183 KRFSLPTFSPQDESLYSSLLALFARMQPLRASL-DFLPMRIEE------------------FQSRAESI----------- 232 (683)
T ss_pred CCcCCCCCCcHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHH------------------HHHHHHHh-----------
Q ss_pred cCCCCcccCCCCCCCCCCccchhhHHHHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhH-------------HHHHHHHH
Q 003179 682 KAPIDNKQGKNSPCSCNNKEEESTCWKEKLSSELNTIKEKYHGLEKDLDLNNKFLETSK-------------EMYDSLER 748 (842)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 748 (842)
.-.+-+.|..+-..|-.+|+-|++|...-+.-|-|-| .+|+.+|+
T Consensus 233 ----------------------fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver 290 (683)
T PF08580_consen 233 ----------------------FPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVER 290 (683)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-------------hHHHHHHHhhhccccccc--hh-----hHHhHhhhhh-HHHHHHHhHHHHHHHH
Q 003179 749 EFRLLQEE-------------RDSLLNKVSESSQTLTMV--TD-----QKENVLKDYN-TEVEKKKNLEEEIKQF 802 (842)
Q Consensus 749 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~ 802 (842)
.+..|++. -+.+-.+-.+-++...++ +- +|. +...+| .=..|-.+|++++..+
T Consensus 291 ~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~g-v~~r~n~~L~~rW~~L~~~~d~~ 364 (683)
T PF08580_consen 291 SLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLSIIDKG-VADRLNADLAQRWLELKEDMDSL 364 (683)
T ss_pred HHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhh-HHHHhhHHHHHHHHHHHHHHHHh
No 373
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.43 E-value=1.6e+02 Score=28.81 Aligned_cols=66 Identities=27% Similarity=0.358 Sum_probs=51.5
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcch
Q 003179 534 ENY-RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESVVSSK 599 (842)
Q Consensus 534 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (842)
+.| ..++.++..++.-.....+++.+|+.++.+.......|..++.+..-++..=..|-..+-.-+
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556 778889999999999999999999999999998888888888887766655544444444333
No 374
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=36.41 E-value=51 Score=38.86 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=27.8
Q ss_pred HHHhcCCCeeEEeeccCCCCccccccCCCC----CCChHHhHHHHHHHHHHh
Q 003179 71 HAAVEGFNGTVFAYGQTSSGKTFTMNGSAD----NPGVISLGVKDIFDAIQM 118 (842)
Q Consensus 71 ~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~----~~GIIPRal~dLF~~I~~ 118 (842)
.-+-.++|. +-.|++|+||||.-.+-.. ..| -+-.+..||..+..
T Consensus 204 ~fve~~~Nl--i~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 204 PLVEPNYNL--IELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred HHHhcCCcE--EEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence 333467776 5679999999998765111 134 34456666666554
No 375
>PRK00106 hypothetical protein; Provisional
Probab=36.38 E-value=2.4e+02 Score=34.33 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=49.3
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHH-----HHhHHHHHH
Q 003179 726 EKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEK-----KKNLEEEIK 800 (842)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 800 (842)
+++|....+.|+.-++.++.++++++.+.+++..-|++++.-++.- -|+.+++.+..+..+ .++.++|.+
T Consensus 124 E~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~e-----ak~~l~~~~~~~~~~~~~~~i~~~e~~a~ 198 (535)
T PRK00106 124 EKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE-----AREIILAETENKLTHEIATRIREAEREVK 198 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777888888888888888888888888888888665542 366677666655432 344455554
Q ss_pred HHH
Q 003179 801 QFS 803 (842)
Q Consensus 801 ~~~ 803 (842)
.=+
T Consensus 199 ~~a 201 (535)
T PRK00106 199 DRS 201 (535)
T ss_pred HHH
Confidence 433
No 376
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=36.30 E-value=15 Score=40.30 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
-|+-+|++|||||+.-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999874
No 377
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.20 E-value=15 Score=43.55 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..|.-.|+||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 568889999999999975
No 378
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=36.13 E-value=28 Score=40.07 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=20.5
Q ss_pred HHHHHHhcCCC---eeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEGFN---GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~GyN---~TIfAYGQTGSGKTyTM~ 96 (842)
|++...+.|.- -|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 56677776654 36665 999999998664
No 379
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=36.12 E-value=15 Score=40.56 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=12.1
Q ss_pred EeeccCCCCccccc
Q 003179 82 FAYGQTSSGKTFTM 95 (842)
Q Consensus 82 fAYGQTGSGKTyTM 95 (842)
.-.|++|||||+||
T Consensus 31 vliGpSGsGKTTtL 44 (309)
T COG1125 31 VLIGPSGSGKTTTL 44 (309)
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999997
No 380
>PRK08118 topology modulation protein; Reviewed
Probab=35.99 E-value=16 Score=36.72 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=12.2
Q ss_pred EEeeccCCCCcccc
Q 003179 81 VFAYGQTSSGKTFT 94 (842)
Q Consensus 81 IfAYGQTGSGKTyT 94 (842)
|+..|++|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999953
No 381
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=35.92 E-value=61 Score=37.24 Aligned_cols=62 Identities=19% Similarity=0.474 Sum_probs=41.6
Q ss_pred cEeeCCCCChHHHHHHHHHHHHHHHhcCCCe---eEEeeccCCCCcc---------------ccccCCC--CCC-ChHHh
Q 003179 49 DHVFEETCSNARVYELLTKDIIHAAVEGFNG---TVFAYGQTSSGKT---------------FTMNGSA--DNP-GVISL 107 (842)
Q Consensus 49 D~VF~~~asQeeVYe~v~~pLV~svL~GyN~---TIfAYGQTGSGKT---------------yTM~Gs~--~~~-GIIPR 107 (842)
|.+|+-+ +.-+.++. .+.++-.|+.. .++-.|++|+||| ||+.|++ ++| ++||.
T Consensus 61 ~~~~G~~----~~i~~lV~-~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGME----ETIERLVN-YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcH----HHHHHHHH-HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCH
Confidence 3677743 33344433 45666666654 5888999999997 5777765 334 89999
Q ss_pred HHHHHHHH
Q 003179 108 GVKDIFDA 115 (842)
Q Consensus 108 al~dLF~~ 115 (842)
-+...|..
T Consensus 136 ~~r~~~~~ 143 (358)
T PF08298_consen 136 ELRREFED 143 (358)
T ss_pred hHHHHHHH
Confidence 88887743
No 382
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=35.91 E-value=15 Score=42.27 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=14.8
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
+--++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 345789999999999765
No 383
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.80 E-value=22 Score=41.47 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
...+..+++|.|.. ..++||||||.+.
T Consensus 115 ~~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 115 AQVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 34567788998864 4569999999764
No 384
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.78 E-value=3.4e+02 Score=30.60 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 003179 345 LKRQKLEIEELRRKLQG 361 (842)
Q Consensus 345 i~~lk~EI~~Lr~~L~~ 361 (842)
+..++.|..+|.++|..
T Consensus 52 l~~le~Ee~~l~~eL~~ 68 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEE 68 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555544
No 385
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=35.71 E-value=26 Score=40.53 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
.-++.+|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568999999999999873
No 386
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=35.65 E-value=26 Score=42.52 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
-..+-.|++|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 446778999999999985
No 387
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=35.62 E-value=28 Score=42.82 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=25.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 54 ETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 54 ~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+...|..+...+ ..+.-.++..-++..|+||||||.+..
T Consensus 262 lt~~Q~~ai~~I----~~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 262 LTGAQKRVVAEI----LADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred CCHHHHHHHHHH----HHhhhccCCceEEEECCCCCcHHHHHH
Confidence 444455554443 333334555678999999999998753
No 388
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.46 E-value=2.7e+02 Score=28.18 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=47.7
Q ss_pred HHHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHH-------HHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHH
Q 003179 707 WKEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKE-------MYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKE 779 (842)
Q Consensus 707 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (842)
.++.|..|-..+ ..|+.+++.+......++..+. +.+.|+.++..++.+...+-..+.
T Consensus 105 ~k~~l~~R~~~~-~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~-------------- 169 (218)
T cd07596 105 VKETLDDRADAL-LTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYE-------------- 169 (218)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 355555554332 3345555555555555544432 344444444444444433333332
Q ss_pred hHhhhhhHHHHHHHh-HHHHHHHHHHHHHhhccceeeehhhhHH
Q 003179 780 NVLKDYNTEVEKKKN-LEEEIKQFSVAFACRQKSLVSFHSDLKS 822 (842)
Q Consensus 780 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (842)
.+-..+..|+.|-.. ...+++.+-.+|+..|.. ||.+...
T Consensus 170 ~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~---~~~~~~~ 210 (218)
T cd07596 170 EISERLKEELKRFHEERARDLKAALKEFARLQVQ---YAEKIAE 210 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 222333445555433 456677777777776654 4544443
No 389
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.40 E-value=35 Score=39.97 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.9
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578899999999999975
No 390
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=35.39 E-value=2.2e+02 Score=31.98 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=30.1
Q ss_pred hhhhhhhhHhhhhchhhhhhhhhhhHHh---hHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccc
Q 003179 711 LSSELNTIKEKYHGLEKDLDLNNKFLET---SKEMYDSLEREFRLLQEERDSLLNKVSESSQTL 771 (842)
Q Consensus 711 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (842)
++..+..+++.+...++++.....+++. ++..+...+.++..++.+..++...+.+..+.+
T Consensus 163 ~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l 226 (423)
T TIGR01843 163 LQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQI 226 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444443 344444555555555555555555544444333
No 391
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=35.31 E-value=28 Score=36.03 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=22.4
Q ss_pred HHHHHHHhc-CC--CeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVE-GF--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~-Gy--N~TIfAYGQTGSGKTyTM~ 96 (842)
-|-++.++. |+ ...+.-+|++|||||....
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 355778885 43 4568999999999998753
No 392
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=35.26 E-value=24 Score=37.80 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=27.5
Q ss_pred eEEeeccCCCCcccccc------CCC-----CCCChHHhHHHHHHHHHHhc
Q 003179 80 TVFAYGQTSSGKTFTMN------GSA-----DNPGVISLGVKDIFDAIQMM 119 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~------Gs~-----~~~GIIPRal~dLF~~I~~~ 119 (842)
+-..+|++|||||.|+- |.. -.+++=..++..||.-+...
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~ 84 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQS 84 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhc
Confidence 33569999999999983 422 24567777888888776654
No 393
>PHA02624 large T antigen; Provisional
Probab=35.14 E-value=32 Score=42.13 Aligned_cols=28 Identities=32% Similarity=0.315 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCe--eEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNG--TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~--TIfAYGQTGSGKTyTM 95 (842)
.++..++.|... ||+-||+.|||||+-.
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 346677778777 9999999999999754
No 394
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=35.02 E-value=1.8e+02 Score=35.75 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=60.0
Q ss_pred hhHHHHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhh
Q 003179 704 STCWKEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLK 783 (842)
Q Consensus 704 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (842)
-.-++.+++.++++....|...-.+|...++-+.++..+++.|.... ..-+.+....=+.....+.+|-.+|+.+..
T Consensus 219 l~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql---~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~ 295 (629)
T KOG0963|consen 219 LFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL---AKANSSKKLAKIDDIDALGSVLNQKDSEIA 295 (629)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhhccCCchHHHHHHHhHHHHHHH
Confidence 34456677888888877777777776666655555444444443222 222333333333444555667778999999
Q ss_pred hhhHHHHHHH-hHHHHHHHHHHHHHh
Q 003179 784 DYNTEVEKKK-NLEEEIKQFSVAFAC 808 (842)
Q Consensus 784 ~~~~~~~~~~-~~~~~~~~~~~~~~~ 808 (842)
.|+++++|-+ -+-+++.-.+.+.+.
T Consensus 296 ~L~~di~~~~~S~~~e~e~~~~qI~~ 321 (629)
T KOG0963|consen 296 QLSNDIERLEASLVEEREKHKAQISA 321 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998854 344444444444433
No 395
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.98 E-value=1e+02 Score=32.03 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003179 738 TSKEMYDSLEREFRLLQEERDSLLNKV 764 (842)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (842)
...-.+..+|..+.-|+.|++.|+++.
T Consensus 155 ~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 155 ALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666654
No 396
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=34.87 E-value=17 Score=36.16 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+-.|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999886
No 397
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=34.87 E-value=23 Score=43.35 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=28.0
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
+.|+.+++.+..-..+.+.+ .. +...+..|+-+|.+|||||+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~-----~~-~a~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV-----EM-VAQSDSTVLILGETGTGKELI 415 (686)
T ss_pred ccccceeecCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCcCHHHH
Confidence 56666766543333333332 22 346678899999999999974
No 398
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.49 E-value=1.3e+02 Score=30.40 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHH--HhhhhhhhhhHhhhHHHHHHH
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEK--ILNARLTGEISELRQEVLVIR 585 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 585 (842)
.++..|+.++.....+...|...+.... +.+.++...|.+|++|+..+.
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888887777666 555666777777777765543
No 399
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=34.28 E-value=7e+02 Score=27.83 Aligned_cols=158 Identities=23% Similarity=0.259 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHHhhhhhccCCcchh
Q 003179 541 KLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLCSMKSFAADGESST 620 (842)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (842)
.+++-.+.+.|+.+|+|..-.|. .+.+..++..+++...-.---++||---+--.|+-+++--.-....+
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~---EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~------- 93 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREI---EAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQE------- 93 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 46677777888888877654443 22333333344444444444445554444455555554322111100
Q ss_pred hhhhhcccccccccchhhhhhhhhccCCCCccCCCChhhhhHHHHHHHHHHhhhhHhhhcccCCCCcccCCCCCCCCCCc
Q 003179 621 AKKLVSISEIGSSLFSTLETNFLMAMDGDKSFSNNDSLVREQCKVFCEKLKSTISALILSEKAPIDNKQGKNSPCSCNNK 700 (842)
Q Consensus 621 ~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (842)
|.||.-. -|...+|+.|..-|+-|.-++.-.--.+ ++
T Consensus 94 ---------------s~Leddl------------------sqt~aikeql~kyiReLEQaNDdLErak--Ra-------- 130 (333)
T KOG1853|consen 94 ---------------SQLEDDL------------------SQTHAIKEQLRKYIRELEQANDDLERAK--RA-------- 130 (333)
T ss_pred ---------------HHHHHHH------------------HHHHHHHHHHHHHHHHHHHhccHHHHhh--hh--------
Confidence 1222211 1688999999999999876653321111 11
Q ss_pred cchhhHHHHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 003179 701 EEESTCWKEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVS 765 (842)
Q Consensus 701 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (842)
+-+..|-+.++|+.--|+..-||-||.... .|-..++-||+|-..|.|++.
T Consensus 131 ---ti~sleDfeqrLnqAIErnAfLESELdEke-----------~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 131 ---TIYSLEDFEQRLNQAIERNAFLESELDEKE-----------VLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 335567788888855566666666665443 344456778888777777665
No 400
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=34.20 E-value=15 Score=35.96 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.2
Q ss_pred EEeeccCCCCcccc
Q 003179 81 VFAYGQTSSGKTFT 94 (842)
Q Consensus 81 IfAYGQTGSGKTyT 94 (842)
|+-.|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999864
No 401
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.17 E-value=1.5e+02 Score=33.50 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=63.0
Q ss_pred hhhhhhhhhHhhhhchhhhhhh-----------hhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhH
Q 003179 710 KLSSELNTIKEKYHGLEKDLDL-----------NNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQK 778 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (842)
+++.-+..+.++|..|..++.. +...|...|+....+..++...+.+-..+.+.+++...++.-++.+|
T Consensus 169 ~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k 248 (312)
T smart00787 169 LLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKK 248 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666665543 34567778888899999999999999999999999999999899999
Q ss_pred HhHhhhhhHHHH
Q 003179 779 ENVLKDYNTEVE 790 (842)
Q Consensus 779 ~~~~~~~~~~~~ 790 (842)
..+..+++....
T Consensus 249 ~e~~~~I~~ae~ 260 (312)
T smart00787 249 SELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHH
Confidence 998888876554
No 402
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=34.17 E-value=16 Score=45.18 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
|.-++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 3446888999999999985
No 403
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=34.17 E-value=3.1e+02 Score=24.73 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHHHHHHHHHhhccc
Q 003179 733 NKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQFSVAFACRQKS 812 (842)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (842)
.+.|......+...+..+..|..+++++...+.... . .+-..+-.+.-.-+..=..+.+.++.+|...-.-+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~ 81 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREE 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred eeeehhhhHHHHHhhhh
Q 003179 813 LVSFHSDLKSKIEKLRA 829 (842)
Q Consensus 813 ~~~~~~~~~~~~~~~~~ 829 (842)
++.-+.+.|. +++|+.
T Consensus 82 l~~a~~~~k~-~e~L~e 97 (123)
T PF02050_consen 82 LQEARRERKK-LEKLKE 97 (123)
T ss_dssp HHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHH-HHHHHH
No 404
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=34.16 E-value=26 Score=41.11 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=26.3
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCC-CeeEEeeccCCCCccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGF-NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~Gy-N~TIfAYGQTGSGKTyTM 95 (842)
+||.|++. +.+ +..+...+-.|. ...++-||+.|+|||.+.
T Consensus 15 ~~~diiGq----~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILGQ----DAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 57777764 333 233444444554 345777999999999876
No 405
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=33.96 E-value=24 Score=41.92 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=31.2
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+.||.+++.+..-..+.+.+ .. +...+..|+-+|.+||||++.-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 4588999988754333333332 22 2346778999999999999764
No 406
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=33.91 E-value=19 Score=35.65 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=13.0
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999854
No 407
>PRK06851 hypothetical protein; Provisional
Probab=33.79 E-value=28 Score=39.93 Aligned_cols=42 Identities=21% Similarity=0.395 Sum_probs=29.4
Q ss_pred EeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 50 HVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 50 ~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+.|....|-.-+| .+.+.+++|.+-.++-.|.+|+|||++|-
T Consensus 7 ~~f~ggnT~~Gf~-----s~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 7 HYFAGGNTARGFY-----SLYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred eeecCCCCCCchh-----hhhhhhccccceEEEEECCCCCCHHHHHH
Confidence 3455544444444 34455667888889999999999999874
No 408
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.70 E-value=24 Score=41.99 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=25.3
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCCCe-eEEeeccCCCCccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGFNG-TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~-TIfAYGQTGSGKTyTM 95 (842)
+||.|.+ |+.+- +.+-..+-.|.-. .++-||+.|+|||.+.
T Consensus 11 ~f~dliG----Qe~vv----~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 11 SFKDLVG----QDVLV----RILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CHHHhcC----cHHHH----HHHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 4666664 33333 2232333345444 7999999999999854
No 409
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=33.70 E-value=29 Score=43.13 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
..++..+| |.|.-|.+ |||+|||+.
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccch
Confidence 46788889 99986666 999999985
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.46 E-value=2.2e+02 Score=35.80 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=37.9
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccc
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTL 771 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (842)
.++.++..++..++.--++|....+.++..+++-+.|...++..++.-..|.+++..-.+.+
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566666666666666666666666666666666666665554443
No 411
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=33.33 E-value=19 Score=33.92 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.6
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999853
No 412
>PRK06696 uridine kinase; Validated
Probab=33.30 E-value=42 Score=35.08 Aligned_cols=35 Identities=26% Similarity=0.125 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 60 RVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 60 eVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++.+.++..++.. -.+....|.--|.+|||||+.-
T Consensus 5 ~~~~~la~~~~~~-~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 5 QLIKELAEHILTL-NLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHHh-CCCCceEEEEECCCCCCHHHHH
Confidence 4444444433321 2455667788899999999864
No 413
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=33.21 E-value=47 Score=36.57 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred HHHHHHHh-cCCCeeEEeeccCCCCcccc
Q 003179 67 KDIIHAAV-EGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 67 ~pLV~svL-~GyN~TIfAYGQTGSGKTyT 94 (842)
..+-...+ .||..-||..||+|.|||..
T Consensus 34 ~Qm~~k~mk~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 34 EQMRKKTMKTGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred HHHHHHHHhccCceEEEEEecCCCCchhh
Confidence 33333344 79999999999999999864
No 414
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.20 E-value=35 Score=38.22 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=26.3
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCC-CeeEEeeccCCCCcccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGF-NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~Gy-N~TIfAYGQTGSGKTyTM~ 96 (842)
+||.|.+ |+.+- ..+...+-.|. ...++-||+.|+|||++..
T Consensus 15 ~~~~iig----~~~~~----~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 15 TFDDVVG----QSHIT----NTLLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred cHHhcCC----cHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 4566643 33333 33444444553 4478889999999998764
No 415
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.02 E-value=17 Score=40.54 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.0
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
..+|+-.|.||||||++|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3457888999999999985
No 416
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=33.02 E-value=23 Score=40.62 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.7
Q ss_pred cCCCeeEEeeccCCCCccc---cccCC
Q 003179 75 EGFNGTVFAYGQTSSGKTF---TMNGS 98 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTy---TM~Gs 98 (842)
.|+.-+|++.|+.|+|||. ||+|.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh
Confidence 6999999999999999997 44554
No 417
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=33.01 E-value=26 Score=42.09 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.++..+++|.|+ ++..+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 445567889875 55569999999874
No 418
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=32.94 E-value=26 Score=41.81 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=20.9
Q ss_pred HHHHhcCCCe------eEEeeccCCCCcccccc
Q 003179 70 IHAAVEGFNG------TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 70 V~svL~GyN~------TIfAYGQTGSGKTyTM~ 96 (842)
+..+++|.+. .|+-.|++|||||+.|-
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3456777554 46889999999999886
No 419
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=32.92 E-value=32 Score=35.43 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=22.5
Q ss_pred HHHHHHHhc-CC--CeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVE-GF--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~-Gy--N~TIfAYGQTGSGKTyTM~ 96 (842)
-+-++.++. |+ ...+.-+|++|+|||..+.
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 356778885 43 4467889999999998754
No 420
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.64 E-value=41 Score=39.49 Aligned_cols=18 Identities=44% Similarity=0.578 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..|+..|++|+|||+|..
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999999964
No 421
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.57 E-value=27 Score=39.96 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=24.3
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCCC-eeEEeeccCCCCccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGFN-GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN-~TIfAYGQTGSGKTyTM 95 (842)
.||.|++ |+.+- ..+...+-.|.- .+++-||+.|+|||.+.
T Consensus 14 ~~~eiiG----q~~~~----~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 14 KFADITA----QEHIT----RTIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred cHhhccC----hHHHH----HHHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 5677765 33332 223333334533 35777999999999754
No 422
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=32.57 E-value=23 Score=41.39 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=29.0
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHh-----cCCCeeEEeeccCCCCccccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAV-----EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL-----~GyN~TIfAYGQTGSGKTyTM 95 (842)
++|+.+-+-+.-.+.+.+.+..|+...-+ .+....|+-||+.|+|||++-
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHH
Confidence 44555544333344444444444433221 245557999999999999864
No 423
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=32.39 E-value=19 Score=38.97 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=16.8
Q ss_pred HhcCCCee------EEeeccCCCCccccc
Q 003179 73 AVEGFNGT------VFAYGQTSSGKTFTM 95 (842)
Q Consensus 73 vL~GyN~T------IfAYGQTGSGKTyTM 95 (842)
|+.|+|.+ +.-.|++|||||+.+
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH
Confidence 45566554 466799999999865
No 424
>PRK08233 hypothetical protein; Provisional
Probab=32.30 E-value=20 Score=35.29 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=12.6
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999864
No 425
>CHL00195 ycf46 Ycf46; Provisional
Probab=32.27 E-value=19 Score=42.70 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
-.|+-||++|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999874
No 426
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=32.24 E-value=22 Score=40.49 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=47.1
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceE
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFL 125 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~ 125 (842)
.|-.|=..+.++.+-=...+..+|+.++ .||. +|.||..|.|||+.+. ..+|.--+-.++|..- ..+..-.
T Consensus 59 ~f~~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL----~l~IalaaG~~lfG~~--v~epGkv 130 (402)
T COG3598 59 SFIQVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLL----YLCIALAAGKNLFGNK--VKEPGKV 130 (402)
T ss_pred heeEehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHH----HHHHHHHhhHHHhccc--ccCCCeE
Confidence 3446666665655444555666777766 5664 4889999999999864 2234444445555531 1122222
Q ss_pred EEEeeeeeecccc
Q 003179 126 VRVSYMEIYNEEI 138 (842)
Q Consensus 126 V~VSylEIYNE~V 138 (842)
+.|| +|.|.|.+
T Consensus 131 lyvs-lEl~re~~ 142 (402)
T COG3598 131 LYVS-LELYREDI 142 (402)
T ss_pred EEEE-eccChHHH
Confidence 3343 46665544
No 427
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=32.21 E-value=28 Score=42.11 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=18.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.++..++.|.++. +.++||||||.+.
T Consensus 32 ~ai~~il~g~dvl--v~apTGsGKTl~y 57 (607)
T PRK11057 32 EIIDAVLSGRDCL--VVMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHHcCCCEE--EEcCCCchHHHHH
Confidence 3445567898864 4579999999763
No 428
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=32.17 E-value=42 Score=41.36 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCcccccc
Q 003179 60 RVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 60 eVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.||... ......++ .|.|-||+.-|.+|||||.|+-
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGsGKTet~K 104 (653)
T cd01379 68 HIFAIA-DAAYQSLVTYNQDQCIVISGESGSGKTESAH 104 (653)
T ss_pred cHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 366533 33344443 5899999999999999999974
No 429
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=32.06 E-value=3.4e+02 Score=27.39 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003179 367 LEQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNHNSLV 420 (842)
Q Consensus 367 ~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~v 420 (842)
...++..|+.++.....+..++..+|.-.+..++.+.+.+.+.+.++..|-+..
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666666766666666666666666666676664443
No 430
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.93 E-value=29 Score=42.67 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=15.0
Q ss_pred eEEeeccCCCCcccccc
Q 003179 80 TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~ 96 (842)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 38889999999999875
No 431
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.92 E-value=3.9e+02 Score=26.74 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhcccc
Q 003179 742 MYDSLEREFRLLQEERDSLLNKVSESSQTL 771 (842)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (842)
.+.+|.+....|..+-|.+...+.++.+.+
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 432
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=31.91 E-value=19 Score=32.94 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999865
No 433
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=31.89 E-value=2.6e+02 Score=35.06 Aligned_cols=118 Identities=23% Similarity=0.287 Sum_probs=53.0
Q ss_pred HhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHH----HHHHHHHHHHHHHhHHHHHHHh------hhccccccchhhH
Q 003179 709 EKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMY----DSLEREFRLLQEERDSLLNKVS------ESSQTLTMVTDQK 778 (842)
Q Consensus 709 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 778 (842)
++|++-+. .++.-.+|-+|...+..+-...+.+ +.+++-..-+.+++.+|.+..- ++.+.|.--+++.
T Consensus 126 ~~l~qs~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdEr 203 (916)
T KOG0249|consen 126 PKLQQSLR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDER 203 (916)
T ss_pred HhhHhHHh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH
Confidence 35555444 4555555555555554443333333 3333333333333333333221 2223332222222
Q ss_pred H-hHhhhhhHHHHHHHhHHHHHHHHHHHHHhh---ccceeeehhhhHHHHHhhh
Q 003179 779 E-NVLKDYNTEVEKKKNLEEEIKQFSVAFACR---QKSLVSFHSDLKSKIEKLR 828 (842)
Q Consensus 779 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 828 (842)
+ ..+|+.-...++..-|.+|..++..-++.= ...+.-|-.++...++.|+
T Consensus 204 lqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 204 LQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 245566666666666666666655544432 2344445555555555554
No 434
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.88 E-value=21 Score=41.74 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=16.4
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
+..|.-.|++|+|||+|+-
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568889999999999984
No 435
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=31.82 E-value=19 Score=32.83 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=13.0
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999865
No 436
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.63 E-value=3.9e+02 Score=27.22 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=23.8
Q ss_pred hhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 003179 712 SSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSE 766 (842)
Q Consensus 712 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (842)
++.|+.+.++...+++.+......++..++-+..+..++...+++-+++...+..
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 141 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKE 141 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444443333
No 437
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=31.61 E-value=32 Score=41.45 Aligned_cols=44 Identities=25% Similarity=0.499 Sum_probs=30.8
Q ss_pred CcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcc
Q 003179 43 GTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKT 92 (842)
Q Consensus 43 ~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKT 92 (842)
...|+||.+.+.+..=.++- .+ -.-..+.+++|+-+|.||+||-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~-----~~-akr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVL-----EL-AKRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred ccccchhhhccCCHHHHHHH-----HH-HHhhcCCCCcEEEecCCCccHH
Confidence 45699999998753222221 11 2335799999999999999994
No 438
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=31.49 E-value=23 Score=40.15 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..++..+.- +.-|+-.|++|+|||...
T Consensus 55 ~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 55 KAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 334444433 456899999999999764
No 439
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=31.46 E-value=36 Score=41.46 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 54 ETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 54 ~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+...|..+...+ +.+.-.....-++..|+||||||...
T Consensus 236 lt~~Q~~ai~~I----~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 236 LTRAQKRVVKEI----LQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCHHHHHHHHHH----HHHhccCCCccEEEECCCCCcHHHHH
Confidence 333455444433 33322333445799999999999864
No 440
>PRK14531 adenylate kinase; Provisional
Probab=31.42 E-value=22 Score=35.99 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
-|+.+|++|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999976
No 441
>PRK06217 hypothetical protein; Validated
Probab=31.34 E-value=21 Score=36.01 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=12.5
Q ss_pred EEeeccCCCCcccc
Q 003179 81 VFAYGQTSSGKTFT 94 (842)
Q Consensus 81 IfAYGQTGSGKTyT 94 (842)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999975
No 442
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=31.32 E-value=3.8e+02 Score=27.28 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=40.2
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc---------cchhhHHhHhhhhhHHHHH-HHhH
Q 003179 726 EKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT---------MVTDQKENVLKDYNTEVEK-KKNL 795 (842)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~ 795 (842)
..++..-.+..+.+.+..+..+.++.-.+.|...++...-+-.+... -+..-++.+-.++..|.++ +.+|
T Consensus 55 ~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l 134 (175)
T PRK14472 55 QSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVL 134 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444555555555555544443322221111 0001223333444444443 3577
Q ss_pred HHHHHHHHHHHHhh
Q 003179 796 EEEIKQFSVAFACR 809 (842)
Q Consensus 796 ~~~~~~~~~~~~~~ 809 (842)
+.+|-.++.+.|.+
T Consensus 135 ~~~i~~lA~~~a~k 148 (175)
T PRK14472 135 RNEVADLAVKGAEK 148 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888876
No 443
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=31.31 E-value=43 Score=42.08 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 60 RVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 60 eVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
.||... ......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSLA-QTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 466533 33344444 699999999999999999986
No 444
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=31.23 E-value=19 Score=45.66 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=17.7
Q ss_pred CCCeeEEeeccCCCCcccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.-|+-.+..|+||||||++|-
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CCcccEEEECCCCCCHHHHHH
Confidence 347777889999999999985
No 445
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=31.10 E-value=30 Score=41.68 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=28.9
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
.|.||.+++.+..-..+.+ .+.. +...+..|+-+|.+||||++.
T Consensus 215 ~~~f~~iiG~S~~m~~~~~-----~i~~-~A~s~~pVLI~GE~GTGKe~~ 258 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQ-----TILL-YARSSAAVLIQGETGTGKELA 258 (538)
T ss_pred ccchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCCCHHHH
Confidence 3678887776532222222 2222 356788999999999999864
No 446
>PRK13767 ATP-dependent helicase; Provisional
Probab=31.05 E-value=27 Score=44.28 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=17.3
Q ss_pred HHHhcCCCeeEEeeccCCCCccccc
Q 003179 71 HAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 71 ~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+++|.|+.| ..+||||||.+.
T Consensus 42 ~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEE--ECCCCCcHHHHH
Confidence 34578988655 459999999864
No 447
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.03 E-value=21 Score=41.42 Aligned_cols=18 Identities=39% Similarity=0.394 Sum_probs=15.5
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..|+-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357888999999999986
No 448
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=30.92 E-value=35 Score=35.15 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=21.7
Q ss_pred HHHHHHhc-CCC--eeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVE-GFN--GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~-GyN--~TIfAYGQTGSGKTyTM~ 96 (842)
+-++.++. |+. ..+..+|++|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 45777785 544 458899999999998753
No 449
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=30.87 E-value=23 Score=35.11 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+..|+.|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999875
No 450
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=30.77 E-value=3.3e+02 Score=29.62 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=41.6
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc--cc-------hhhHHhHhhhhhHHHHH-HHhH
Q 003179 726 EKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT--MV-------TDQKENVLKDYNTEVEK-KKNL 795 (842)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~-~~~~ 795 (842)
..++..-.+..+.+.+..+..+.++.-++.|+..++...-+-.+... ++ ...++.+..++..|.++ +++|
T Consensus 42 ~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L 121 (250)
T PRK14474 42 ANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKAL 121 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444455555555555555444332222110 00 01234444444444443 3678
Q ss_pred HHHHHHHHHHHHhh
Q 003179 796 EEEIKQFSVAFACR 809 (842)
Q Consensus 796 ~~~~~~~~~~~~~~ 809 (842)
..+|-.+++.+|.+
T Consensus 122 ~~~v~~la~~~A~k 135 (250)
T PRK14474 122 QQQTGQQMVKIIRA 135 (250)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888876
No 451
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.74 E-value=24 Score=38.50 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 466666999999999974
No 452
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=30.74 E-value=23 Score=30.30 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=12.7
Q ss_pred EEeeccCCCCcccccc
Q 003179 81 VFAYGQTSSGKTFTMN 96 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~ 96 (842)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5667888999998854
No 453
>PRK01172 ski2-like helicase; Provisional
Probab=30.57 E-value=32 Score=41.96 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=16.7
Q ss_pred HHHhcCCCeeEEeeccCCCCcccc
Q 003179 71 HAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 71 ~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
..+.+|-| ++..++||||||..
T Consensus 32 ~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 32 EQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHhcCCc--EEEECCCCchHHHH
Confidence 34467776 57778999999975
No 454
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=30.56 E-value=20 Score=36.31 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=12.6
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999986
No 455
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=30.55 E-value=29 Score=41.63 Aligned_cols=45 Identities=18% Similarity=0.396 Sum_probs=29.8
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.|.||.+++.+..-..+.+ .+.. +...+..|+-+|.+||||++.-
T Consensus 208 ~~~f~~iiG~S~~m~~~~~-----~i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRA-----LVRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 4788888876532222222 2222 3567889999999999998653
No 456
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=30.52 E-value=20 Score=36.53 Aligned_cols=15 Identities=33% Similarity=0.302 Sum_probs=12.4
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|.-.|++|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999863
No 457
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.49 E-value=6.5e+02 Score=27.08 Aligned_cols=101 Identities=14% Similarity=0.292 Sum_probs=52.7
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHHHHHHHHh------HHHHHHHhhhcccccc----chhhHH-------hHhhhh-hHHH
Q 003179 728 DLDLNNKFLETSKEMYDSLEREFRLLQEER------DSLLNKVSESSQTLTM----VTDQKE-------NVLKDY-NTEV 789 (842)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~-~~~~ 789 (842)
.+....+.++.+|.+|+...+|.+.++... +.+..++.++.+...- ...-+. .++..+ ..|.
T Consensus 117 ~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe 196 (261)
T cd07648 117 AIQTTTAALQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEE 196 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566677777777777766654322 2344444433322110 000000 111111 2356
Q ss_pred HHHHhHHHHHHHHHHHHHhhccceeeehhhhHHHHHhhh
Q 003179 790 EKKKNLEEEIKQFSVAFACRQKSLVSFHSDLKSKIEKLR 828 (842)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (842)
.|..-|++=+.+|+...+.---.+-..|..++..|+++-
T Consensus 197 ~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~id 235 (261)
T cd07648 197 SHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDELT 235 (261)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 666777777777777776655556667777777777653
No 458
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=30.38 E-value=6.8e+02 Score=26.55 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=43.7
Q ss_pred HHHHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHH--------hHHHHHHHhhhccccc
Q 003179 706 CWKEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEE--------RDSLLNKVSESSQTLT 772 (842)
Q Consensus 706 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 772 (842)
.|...+..+...+......+.+.....-+.++.+|.+|+..-++++-++.+ -+.+-.++.+..+.+.
T Consensus 93 ~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~ 167 (236)
T cd07651 93 AFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSIN 167 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 344444555556667777777888888888888888888888887766643 2344444544444433
No 459
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=30.34 E-value=3.4e+02 Score=32.06 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHH
Q 003179 548 NVTEEKNEFQRKYSEEKILNARLTGEISELRQEV 581 (842)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (842)
.-.++...+.+...|...+.+++..+++..++..
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l 226 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKL 226 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544444444443
No 460
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=30.20 E-value=39 Score=42.65 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 61 VYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 61 VYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
||... ..+++.+-++- .|+..|+||||||..+
T Consensus 6 i~~~~-~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAAVL-PELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHH-HHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 44432 45565554443 4778999999999876
No 461
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.11 E-value=1e+02 Score=36.66 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=36.2
Q ss_pred hhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 003179 713 SELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVS 765 (842)
Q Consensus 713 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (842)
+.|..-..+-..|||+|..-++.++.+...-..+|+++..|..|+..|.+.+.
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666677777777766666666666777777777777777777764
No 462
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.05 E-value=28 Score=43.31 Aligned_cols=44 Identities=27% Similarity=0.508 Sum_probs=29.9
Q ss_pred CCCeeEEeeccCCCCccccccCCC----------CCC-------ChHHhHHHHHHHHHHhc
Q 003179 76 GFNGTVFAYGQTSSGKTFTMNGSA----------DNP-------GVISLGVKDIFDAIQMM 119 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM~Gs~----------~~~-------GIIPRal~dLF~~I~~~ 119 (842)
.....|+-||++|+||||....-. ..| |---..+++||...+..
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSA 759 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhcc
Confidence 445679999999999999764311 112 44456778888876653
No 463
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=29.90 E-value=30 Score=42.13 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=19.2
Q ss_pred HHHHHhcCC-CeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGF-NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~Gy-N~TIfAYGQTGSGKTyTM 95 (842)
+...+-.|. .-.++-||+.|+|||.+.
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 333344554 446888999999999876
No 464
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=29.89 E-value=24 Score=35.02 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.5
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|.-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999854
No 465
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.82 E-value=32 Score=42.59 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=26.2
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCC-CeeEEeeccCCCCccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGF-NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~Gy-N~TIfAYGQTGSGKTyTM 95 (842)
+||.|++. +.+ .+.+...+-.|. ...++-||+.|+|||.+.
T Consensus 13 tFddVIGQ----e~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 13 NFNELVGQ----NHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 56777753 333 233333333453 457788999999999875
No 466
>PRK10867 signal recognition particle protein; Provisional
Probab=29.82 E-value=63 Score=37.96 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.9
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
...|+..|++|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3568888999999999964
No 467
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=29.74 E-value=23 Score=34.52 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.4
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|.-+|++|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 468
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=29.72 E-value=4.4e+02 Score=25.91 Aligned_cols=84 Identities=11% Similarity=0.177 Sum_probs=36.5
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc---------cchhhHHhHhhhhhHHHHH-HHhH
Q 003179 726 EKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT---------MVTDQKENVLKDYNTEVEK-KKNL 795 (842)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~ 795 (842)
.+.+..-.+..+.+.+..+..+..+.-.+.|...+++..-.-.+... -+...++.+-.++..+.++ +++|
T Consensus 41 ~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l 120 (156)
T PRK05759 41 ADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREEL 120 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444443322222111 0001223333333333333 3456
Q ss_pred HHHHHHHHHHHHhh
Q 003179 796 EEEIKQFSVAFACR 809 (842)
Q Consensus 796 ~~~~~~~~~~~~~~ 809 (842)
+.++-.++.+.|.+
T Consensus 121 ~~~~~~lA~~~a~k 134 (156)
T PRK05759 121 RKQVADLAVAGAEK 134 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777776654
No 469
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.68 E-value=2.6e+02 Score=30.42 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=40.2
Q ss_pred hhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 003179 717 TIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSES 767 (842)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (842)
-+-++...++.+....++.|..+.++-..|+.+...+.+|+..|-++..+.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~ea 59 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEA 59 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555778888888999999999999999999999998887775544
No 470
>PRK14532 adenylate kinase; Provisional
Probab=29.61 E-value=24 Score=35.39 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=13.0
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+..|++|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999975
No 471
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=29.59 E-value=4.8e+02 Score=27.57 Aligned_cols=75 Identities=27% Similarity=0.447 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccch---------hhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 003179 342 AALLKRQKLEIEELRRKLQGSHAG---------VLEQEILKLRNDMLKYE--------LEREKLQLELEEERRSRKERDQ 404 (842)
Q Consensus 342 ~~li~~lk~EI~~Lr~~L~~~~~~---------~~e~ei~kLr~~~~~~e--------~e~e~l~~elee~~~~~~e~e~ 404 (842)
+.+|.....||.-|+.+|..+... ..+.++.+++..+..+. .++++|..++........+.+.
T Consensus 60 pqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ 139 (194)
T PF15619_consen 60 PQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEK 139 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 455677777787777777654311 12333334333332221 2456666666666666666666
Q ss_pred HHHHHHHHHHHh
Q 003179 405 CVREQQMRLQNH 416 (842)
Q Consensus 405 ~~~e~q~~i~~l 416 (842)
.+..+..+++-.
T Consensus 140 ki~~Lek~leL~ 151 (194)
T PF15619_consen 140 KIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
No 472
>PRK00300 gmk guanylate kinase; Provisional
Probab=29.43 E-value=25 Score=35.72 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=14.4
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
+..|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346788899999999654
No 473
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.39 E-value=3.3e+02 Score=30.55 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHH
Q 003179 349 KLEIEELRRKLQGSHAGVLEQEILK 373 (842)
Q Consensus 349 k~EI~~Lr~~L~~~~~~~~e~ei~k 373 (842)
..||.+||.+|...+-.-+++|.-+
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHR 112 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHR 112 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655544444444443
No 474
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=29.36 E-value=40 Score=40.84 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=28.9
Q ss_pred eEEeeccCCCCccccccC---CC---CCCChHHhHHHHHHHHHHh
Q 003179 80 TVFAYGQTSSGKTFTMNG---SA---DNPGVISLGVKDIFDAIQM 118 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~G---s~---~~~GIIPRal~dLF~~I~~ 118 (842)
-||..|+|.|||||--.- +. --.|-+-....++|+....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 389999999999997642 21 1246667778889998864
No 475
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=29.32 E-value=54 Score=34.73 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=22.7
Q ss_pred HHHHHHHHhc--CCCeeEEeeccCCCCccccc
Q 003179 66 TKDIIHAAVE--GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 66 ~~pLV~svL~--GyN~TIfAYGQTGSGKTyTM 95 (842)
+..+.+.+.+ .-...|.-+|..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 3455566665 67778999999999999754
No 476
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=29.23 E-value=26 Score=42.53 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHhhccceeeehh
Q 003179 793 KNLEEEIKQFSVAFACRQKSLVSFHS 818 (842)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (842)
.++++|-+.|=+|+..=++.|.=.|+
T Consensus 587 ~~~~EErRlfYVA~TRAk~~L~Ls~~ 612 (664)
T TIGR01074 587 DNVEEERRLAYVGITRAQKELTFTLC 612 (664)
T ss_pred chHHHHHHHHHHhhhhhhheeEEEeh
Confidence 46899999999999766665554444
No 477
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=29.20 E-value=41 Score=35.53 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=19.8
Q ss_pred HHHHHHhc-CC--CeeEEeeccCCCCccc
Q 003179 68 DIIHAAVE-GF--NGTVFAYGQTSSGKTF 93 (842)
Q Consensus 68 pLV~svL~-Gy--N~TIfAYGQTGSGKTy 93 (842)
+-++.++. |+ ..+++.+|++|||||.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 44667664 44 5678999999999996
No 478
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=29.09 E-value=1.2e+03 Score=30.20 Aligned_cols=393 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003179 342 AALLKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNHNSLVT 421 (842)
Q Consensus 342 ~~li~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~v~ 421 (842)
...++.++.+|..|+..+.. ++-+..+|+..+.-++....+..-++++......++++.+..-...|.-...-+-
T Consensus 98 Eddlk~~~sQiriLQn~c~~-----lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLR-----LEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLH 172 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Q ss_pred ccCCCCC---------Cchhhhhhcc---ccccccccCcccccCCCCCCCcccccCcchhhcccccCCCCCCCCCCccCC
Q 003179 422 SSGGDGS---------HSEEQNSKRQ---SFCEECSDSNGICQGGAFRTPCSKAAPNAFVVKRSNYSRLPEYSPLPDTFS 489 (842)
Q Consensus 422 ~s~~~~~---------~~~~~~~kr~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 489 (842)
.+..... ...-...+++ .+.+...++--+.+-.-...-..-.+-.-+.+-.---+...-+-|+--+-+
T Consensus 173 nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s 252 (1265)
T KOG0976|consen 173 DKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCS 252 (1265)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhH
Q ss_pred cccCchhhhhhcccccccccccccccCcccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHH-Hhhh
Q 003179 490 NVADEDTWLKMNKGYIADLDSLQMTPATKVQSFPLNDGTPGCSNENYRDVQKLKRQLENVTEEKNEFQRKYSEEK-ILNA 568 (842)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 568 (842)
++.+-|......+-.+- |+-.+...-..-|.....++.++++-..+.+ .|..
T Consensus 253 ~i~E~d~~lq~sak~ie---------------------------E~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 253 MIEEQDMDLQASAKEIE---------------------------EKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHHhhhhhccCCcchhhhhhhcccccccccchhhhhhhhhccCC
Q 003179 569 RLTGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLCSMKSFAADGESSTAKKLVSISEIGSSLFSTLETNFLMAMDG 648 (842)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~ 648 (842)
-.++-.-.-.|-...++..+-.+---.+.-+-.+.+.-.+..+|-..-. -||.++.|+.-+
T Consensus 306 t~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~-------------------eLEKkrd~al~d 366 (1265)
T KOG0976|consen 306 TRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLN-------------------ELEKKRDMALMD 366 (1265)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-------------------HHHHHHHHHHHh
Q ss_pred CCccCCCChhhhhHHHHHHHHHHhhhhHhhhcccCCCCcccCCCCCCCCCCccchhhHHHHhhhhhhhhhHhhhhchhhh
Q 003179 649 DKSFSNNDSLVREQCKVFCEKLKSTISALILSEKAPIDNKQGKNSPCSCNNKEEESTCWKEKLSSELNTIKEKYHGLEKD 728 (842)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 728 (842)
-++. .-+-+.....-++| +.+.++.--+-.+-||.--+-+-+...-...| +||+.--|+...+-++
T Consensus 367 vr~i----~e~k~nve~elqsL------~~l~aerqeQidelKn~if~~e~~~~dhe~~k----neL~~a~ekld~mgth 432 (1265)
T KOG0976|consen 367 VRSI----QEKKENVEEELQSL------LELQAERQEQIDELKNHIFRLEQGKKDHEAAK----NELQEALEKLDLMGTH 432 (1265)
T ss_pred HHHH----HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhhhhhccchhHHHH----HHHHHHHHHHHHHhHH
Q ss_pred hhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHh---hhccccccchhhHHhHhhhhhHHHHHHHhHHHHH
Q 003179 729 LDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVS---ESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEI 799 (842)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (842)
+.--.++++.-+--|+.-|-..+---+.-..+...+- .|-.+-.-|-.+=+.+--++..+..|-..|++||
T Consensus 433 l~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEei 506 (1265)
T KOG0976|consen 433 LSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEI 506 (1265)
T ss_pred HHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=29.01 E-value=27 Score=43.59 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=13.8
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999764
No 480
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=28.97 E-value=26 Score=33.50 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
-.+.-.|++|||||.++.
T Consensus 16 e~v~I~GpSGsGKSTLl~ 33 (107)
T cd00820 16 VGVLITGDSGIGKTELAL 33 (107)
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 346778999999998764
No 481
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.94 E-value=28 Score=38.75 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=28.6
Q ss_pred cCCCe--eEEeeccCCCCcccccc--------------CCC---CCCChHHhHHHHHHHHHHh
Q 003179 75 EGFNG--TVFAYGQTSSGKTFTMN--------------GSA---DNPGVISLGVKDIFDAIQM 118 (842)
Q Consensus 75 ~GyN~--TIfAYGQTGSGKTyTM~--------------Gs~---~~~GIIPRal~dLF~~I~~ 118 (842)
-|..- .|+.||+.|+|||..-- |+. ..-|==.|.+++||+....
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mart 268 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMART 268 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc
Confidence 35543 58999999999997542 211 0124446888888887543
No 482
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=28.88 E-value=49 Score=38.50 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.3
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356999999999999864
No 483
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=28.63 E-value=34 Score=42.62 Aligned_cols=28 Identities=11% Similarity=0.289 Sum_probs=20.5
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
.|..++.+ +..++-.|..|+||||+|-+
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 45555655 44667889999999998853
No 484
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=28.50 E-value=21 Score=40.85 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=12.7
Q ss_pred eEEeeccCCCCcccccc
Q 003179 80 TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~ 96 (842)
-++..|.||||||.+|.
T Consensus 17 ~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 17 HILIIGATGSGKTQAIR 33 (386)
T ss_dssp -EEEEE-TTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 47889999999997654
No 485
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=28.49 E-value=6e+02 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=21.1
Q ss_pred HhHhhhhhHHHHH-HHhHHHHHHHHHHHHHhh
Q 003179 779 ENVLKDYNTEVEK-KKNLEEEIKQFSVAFACR 809 (842)
Q Consensus 779 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 809 (842)
+++..++..|..+ +.+|..+|-.+++..|.+
T Consensus 104 ~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~k 135 (159)
T PRK13461 104 ERAKLEAQREKEKAEYEIKNQAVDLAVLLSSK 135 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444 567888888888888876
No 486
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=28.44 E-value=42 Score=34.83 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=21.6
Q ss_pred HHHHHHh-cCC--CeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAV-EGF--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL-~Gy--N~TIfAYGQTGSGKTyTM~ 96 (842)
+-++.++ .|+ ...+.-+|++|+|||+...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 4467776 454 5678899999999998653
No 487
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=28.43 E-value=6e+02 Score=32.13 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=48.2
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHHHHhhHHHH-------HhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcc
Q 003179 534 ENY-RDVQKLKRQLENVTEEKNEFQRKYSEEK-------ILNARLTGEISELRQEVLVIREIPRRLYESVVSS 598 (842)
Q Consensus 534 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (842)
..| ..+.-...|-+..++++..+++-|---. .+|.++..++.+.+++....+|.+.-|||++.--
T Consensus 52 ~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLela 124 (916)
T KOG0249|consen 52 TKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELA 124 (916)
T ss_pred HHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHh
Confidence 344 4455555666666777777777775432 6888899999999999999999999999987643
No 488
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.39 E-value=5.8e+02 Score=29.50 Aligned_cols=96 Identities=27% Similarity=0.358 Sum_probs=62.5
Q ss_pred HHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhH
Q 003179 708 KEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNT 787 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (842)
=++|..++...-|+.+.-||-+ |++|+..-..|...-+++.-.+++-..+-..|++-++.|+-|+.+=|.+-.++..
T Consensus 243 L~kl~~~i~~~lekI~sREk~i---N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 243 LDKLQQDISKTLEKIESREKYI---NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477778877777777777644 4466666666777777777777777777777777777776666655555444432
Q ss_pred H-------------HHHHHhHHHHHHHHHHHH
Q 003179 788 E-------------VEKKKNLEEEIKQFSVAF 806 (842)
Q Consensus 788 ~-------------~~~~~~~~~~~~~~~~~~ 806 (842)
. .+=...|++||+++-+-.
T Consensus 320 rg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 320 RGSSMTDGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2 122345788888876543
No 489
>PHA01747 putative ATP-dependent protease
Probab=28.37 E-value=26 Score=40.51 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 66 TKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 66 ~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.-|+|+.-..+-|.-++=.|+.||||||+.
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 357777666788888999999999999984
No 490
>PTZ00110 helicase; Provisional
Probab=28.35 E-value=33 Score=41.01 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=18.7
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+..++.|.|. ++.++||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4567889876 56679999999874
No 491
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=28.35 E-value=24 Score=43.48 Aligned_cols=19 Identities=42% Similarity=0.641 Sum_probs=16.6
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
|+-++..|+||||||++|.
T Consensus 434 ~~n~~I~G~tGsGKS~~~~ 452 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLN 452 (785)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6677889999999999974
No 492
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=28.34 E-value=24 Score=36.66 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.9
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999764
No 493
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.25 E-value=2.4e+02 Score=31.92 Aligned_cols=102 Identities=21% Similarity=0.302 Sum_probs=65.3
Q ss_pred hhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHH
Q 003179 712 SSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEK 791 (842)
Q Consensus 712 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (842)
..+|....+++...++.|...+..|....+..+.|+.+++....|...|.+.+.....+|.- =+.++.-|..|..|
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r----A~~Li~~L~~E~~R 295 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER----AEKLISGLSGEKER 295 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----HHHHHhhhcchhhh
Confidence 34555555556666777777777777777777888888877777777777777666555541 13466666666666
Q ss_pred HH----hHHHHHH------HHHHHHHhhccceeeeh
Q 003179 792 KK----NLEEEIK------QFSVAFACRQKSLVSFH 817 (842)
Q Consensus 792 ~~----~~~~~~~------~~~~~~~~~~~~~~~~~ 817 (842)
-. +++..++ .++.||..--|.|.+-|
T Consensus 296 W~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~ 331 (344)
T PF12777_consen 296 WSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTPEY 331 (344)
T ss_dssp CHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCHHH
Confidence 54 3333333 35778887777766533
No 494
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=28.23 E-value=52 Score=41.25 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=15.9
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
.++++-+|+||+|||++.
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367999999999999985
No 495
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.21 E-value=3.1e+02 Score=35.82 Aligned_cols=59 Identities=27% Similarity=0.369 Sum_probs=51.5
Q ss_pred hhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 003179 714 ELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT 772 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (842)
|++...++.+.++.++.....++.+..+.|.+......+|+++-+-|-.++....+.+.
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~ 500 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELE 500 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888899999999999999999999999999999999999888887777665
No 496
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=28.18 E-value=28 Score=33.52 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=17.1
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM 95 (842)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 467788999999999999864
No 497
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=28.04 E-value=40 Score=40.70 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=24.6
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcC-CCeeEEeeccCCCCccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEG-FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~G-yN~TIfAYGQTGSGKTyTM 95 (842)
+||.|.+ |+.|.... ...+-.| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~~viG----q~~v~~~L----~~~i~~~~~~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 14 TFEDVVG----QEHITKTL----KNAIKQGKISHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred cHHhccC----cHHHHHHH----HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4566654 55554433 2333334 3445667999999999765
No 498
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.01 E-value=1.5e+03 Score=29.88 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=32.8
Q ss_pred hhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHH
Q 003179 722 YHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEI 799 (842)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (842)
|+.|.-|++.-++-+.-.+..++.++..+..|+.|.+-|--++.. +.++-..++..|+.+-.++.+.-.+|
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~-------~~~~~~~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK-------VEKDVKKAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 444444444444445555555555555555555555555444432 22333334444444444444444444
No 499
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=28 Score=39.34 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=46.3
Q ss_pred eecEeeCCCCChHHHHHHHHHHH-HHHHhcCCC---eeEEeeccCCCCccccc-----------cCCC------CCCChH
Q 003179 47 AFDHVFEETCSNARVYELLTKDI-IHAAVEGFN---GTVFAYGQTSSGKTFTM-----------NGSA------DNPGVI 105 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pL-V~svL~GyN---~TIfAYGQTGSGKTyTM-----------~Gs~------~~~GII 105 (842)
.++-|-+-+..-+.+-+.+.-|+ .-++|.|.- ..|+-||+.|+||+|.- |.-. ..-|=-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 44555554444455555555554 345565553 67999999999999953 2111 112666
Q ss_pred HhHHHHHHHHHHhcc
Q 003179 106 SLGVKDIFDAIQMMS 120 (842)
Q Consensus 106 PRal~dLF~~I~~~~ 120 (842)
-+.+..||+...+..
T Consensus 211 EkLVknLFemARe~k 225 (439)
T KOG0739|consen 211 EKLVKNLFEMARENK 225 (439)
T ss_pred HHHHHHHHHHHHhcC
Confidence 788999999877653
No 500
>PRK04040 adenylate kinase; Provisional
Probab=27.71 E-value=27 Score=36.03 Aligned_cols=13 Identities=38% Similarity=0.422 Sum_probs=0.0
Q ss_pred EEeeccCCCCccc
Q 003179 81 VFAYGQTSSGKTF 93 (842)
Q Consensus 81 IfAYGQTGSGKTy 93 (842)
|+.+|.+|||||+
T Consensus 5 i~v~G~pG~GKtt 17 (188)
T PRK04040 5 VVVTGVPGVGKTT 17 (188)
T ss_pred EEEEeCCCCCHHH
Done!