Query 003179
Match_columns 842
No_of_seqs 349 out of 1921
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t5c_A CENP-E protein, centrom 100.0 1.4E-89 4.9E-94 749.5 30.5 332 1-341 3-340 (349)
2 2y65_A Kinesin, kinesin heavy 100.0 2.5E-90 8.5E-95 759.3 24.1 340 2-356 11-360 (365)
3 3b6u_A Kinesin-like protein KI 100.0 1E-89 3.4E-94 755.8 25.8 342 2-348 21-371 (372)
4 3cob_A Kinesin heavy chain-lik 100.0 8.4E-90 2.9E-94 755.9 23.8 344 2-359 5-354 (369)
5 2vvg_A Kinesin-2; motor protei 100.0 1.9E-89 6.5E-94 748.6 26.2 333 2-341 4-347 (350)
6 3bfn_A Kinesin-like protein KI 100.0 8.5E-90 2.9E-94 759.4 23.4 335 2-344 21-362 (388)
7 2zfi_A Kinesin-like protein KI 100.0 5.7E-89 2E-93 748.9 26.9 336 1-337 3-362 (366)
8 1goj_A Kinesin, kinesin heavy 100.0 2.5E-88 8.6E-93 741.1 28.9 331 2-342 6-343 (355)
9 2owm_A Nckin3-434, related to 100.0 3.4E-88 1.2E-92 758.4 28.7 337 2-341 38-425 (443)
10 3lre_A Kinesin-like protein KI 100.0 4.3E-88 1.5E-92 739.4 26.4 325 2-329 10-355 (355)
11 2wbe_C Bipolar kinesin KRP-130 100.0 1.1E-87 3.8E-92 740.2 25.1 332 2-340 23-372 (373)
12 1x88_A Kinesin-like protein KI 100.0 4.8E-88 1.7E-92 739.9 20.6 330 2-337 8-358 (359)
13 4a14_A Kinesin, kinesin-like p 100.0 8.9E-87 3.1E-91 726.2 27.2 321 2-327 11-344 (344)
14 1bg2_A Kinesin; motor protein, 100.0 4.9E-87 1.7E-91 723.4 24.7 312 2-329 7-325 (325)
15 3gbj_A KIF13B protein; kinesin 100.0 4.2E-86 1.5E-90 723.4 26.5 327 2-329 1-350 (354)
16 3t0q_A AGR253WP; kinesin, alph 100.0 2.9E-85 1E-89 715.5 30.4 323 2-333 5-348 (349)
17 1f9v_A Kinesin-like protein KA 100.0 2.7E-85 9.4E-90 715.3 29.7 324 2-334 3-346 (347)
18 2h58_A Kinesin-like protein KI 100.0 2.5E-85 8.5E-90 711.3 27.7 317 2-330 4-329 (330)
19 3nwn_A Kinesin-like protein KI 100.0 3.9E-85 1.3E-89 716.8 23.7 318 2-329 24-359 (359)
20 2nr8_A Kinesin-like protein KI 100.0 7.3E-85 2.5E-89 714.4 23.7 318 2-329 23-358 (358)
21 2rep_A Kinesin-like protein KI 100.0 2.7E-84 9.1E-89 713.8 26.5 319 2-329 22-376 (376)
22 1ry6_A Internal kinesin; kines 100.0 2.1E-84 7.2E-89 711.2 24.5 323 3-337 1-339 (360)
23 4etp_A Kinesin-like protein KA 100.0 1.7E-83 6E-88 713.2 31.1 324 2-334 59-402 (403)
24 2heh_A KIF2C protein; kinesin, 100.0 1.1E-83 3.8E-88 710.5 25.3 317 2-332 51-385 (387)
25 3u06_A Protein claret segregat 100.0 2.1E-83 7.2E-88 714.0 25.7 326 2-340 59-394 (412)
26 1v8k_A Kinesin-like protein KI 100.0 2.6E-83 8.7E-88 711.8 24.9 319 2-334 71-407 (410)
27 3dc4_A Kinesin-like protein NO 100.0 1.3E-81 4.5E-86 685.4 24.7 306 2-334 22-340 (344)
28 4h1g_A Maltose binding protein 100.0 1.8E-78 6.1E-83 713.9 26.9 320 1-330 373-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 1.5E-30 5.2E-35 238.1 4.9 100 252-353 1-100 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 4.4E-28 1.5E-32 227.6 9.9 98 256-355 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 7.8E-25 2.7E-29 231.2 7.7 264 2-335 24-295 (298)
32 3ec2_A DNA replication protein 93.7 0.015 5.1E-07 55.9 0.7 51 45-96 6-56 (180)
33 2w58_A DNAI, primosome compone 92.5 0.036 1.2E-06 54.0 1.5 51 45-96 21-72 (202)
34 2qgz_A Helicase loader, putati 91.4 0.058 2E-06 57.4 1.6 51 45-96 120-170 (308)
35 1c1g_A Tropomyosin; contractIl 90.7 13 0.00046 36.3 20.1 65 537-601 6-70 (284)
36 3na7_A HP0958; flagellar bioge 88.0 1.7 5.9E-05 45.2 9.5 93 711-803 23-117 (256)
37 1i84_S Smooth muscle myosin he 88.0 0.81 2.8E-05 57.3 8.2 35 60-95 151-186 (1184)
38 3t15_A Ribulose bisphosphate c 87.5 0.22 7.6E-06 52.3 2.4 48 48-95 2-53 (293)
39 1i84_S Smooth muscle myosin he 87.5 0.56 1.9E-05 58.8 6.3 16 537-552 864-879 (1184)
40 1jbk_A CLPB protein; beta barr 87.3 0.32 1.1E-05 45.3 3.1 30 67-96 32-61 (195)
41 4etp_B Spindle POLE BODY-assoc 87.1 3.6 0.00012 44.6 11.3 240 2-311 59-310 (333)
42 2r62_A Cell division protease 86.3 0.28 9.7E-06 49.7 2.3 51 44-95 6-61 (268)
43 2bjv_A PSP operon transcriptio 85.5 0.3 1E-05 49.7 2.0 45 45-95 2-46 (265)
44 1l8q_A Chromosomal replication 85.2 0.37 1.3E-05 50.6 2.6 49 44-96 6-55 (324)
45 4b4t_K 26S protease regulatory 85.0 1.1 3.8E-05 50.3 6.5 75 45-119 168-264 (428)
46 2p65_A Hypothetical protein PF 84.8 0.38 1.3E-05 44.9 2.3 30 67-96 32-61 (187)
47 1g8p_A Magnesium-chelatase 38 84.1 0.33 1.1E-05 50.9 1.6 44 44-95 19-62 (350)
48 4b4t_L 26S protease subunit RP 83.4 1.9 6.5E-05 48.5 7.5 75 45-119 177-273 (437)
49 1ixz_A ATP-dependent metallopr 83.2 0.25 8.4E-06 50.0 0.2 52 44-96 11-67 (254)
50 3h4m_A Proteasome-activating n 83.2 0.29 1E-05 50.0 0.8 52 44-95 12-68 (285)
51 3te6_A Regulatory protein SIR3 83.0 0.48 1.6E-05 51.2 2.4 33 63-95 30-62 (318)
52 3cf0_A Transitional endoplasmi 82.6 0.39 1.3E-05 50.4 1.4 51 45-95 11-66 (301)
53 2v71_A Nuclear distribution pr 82.1 9.2 0.00031 38.7 11.1 65 700-767 8-82 (189)
54 4b4t_M 26S protease regulatory 81.5 0.92 3.2E-05 51.1 4.0 75 45-119 177-273 (434)
55 1c1g_A Tropomyosin; contractIl 81.1 43 0.0015 32.6 19.7 23 538-560 14-36 (284)
56 2dfs_A Myosin-5A; myosin-V, in 80.8 7.1 0.00024 48.7 11.8 55 713-770 998-1052(1080)
57 2z4s_A Chromosomal replication 80.1 0.78 2.7E-05 51.1 2.8 50 43-96 99-148 (440)
58 3b9p_A CG5977-PA, isoform A; A 79.4 0.47 1.6E-05 48.9 0.7 52 44-95 16-71 (297)
59 2chg_A Replication factor C sm 79.1 0.99 3.4E-05 42.9 2.8 22 75-96 35-56 (226)
60 4b4t_J 26S protease regulatory 79.1 2.8 9.7E-05 46.8 6.9 74 46-119 145-240 (405)
61 3bos_A Putative DNA replicatio 79.0 0.84 2.9E-05 44.5 2.3 45 46-96 25-70 (242)
62 4b4t_I 26S protease regulatory 78.3 4.3 0.00015 45.8 8.1 75 45-119 178-274 (437)
63 1qde_A EIF4A, translation init 77.8 0.96 3.3E-05 44.3 2.4 24 69-94 44-67 (224)
64 2v1u_A Cell division control p 77.5 0.5 1.7E-05 49.7 0.3 39 57-96 23-62 (387)
65 1vec_A ATP-dependent RNA helic 77.4 1.1 3.7E-05 43.2 2.6 25 69-95 33-57 (206)
66 1d2n_A N-ethylmaleimide-sensit 77.2 1.3 4.3E-05 45.3 3.1 21 75-95 61-81 (272)
67 1iy2_A ATP-dependent metallopr 76.9 0.43 1.5E-05 49.2 -0.5 52 44-96 35-91 (278)
68 2gxq_A Heat resistant RNA depe 76.6 1.1 3.8E-05 43.1 2.4 23 70-94 32-54 (207)
69 3d8b_A Fidgetin-like protein 1 76.2 0.51 1.7E-05 50.8 -0.1 50 46-95 81-134 (357)
70 3na7_A HP0958; flagellar bioge 76.1 14 0.00046 38.4 10.6 87 743-829 92-186 (256)
71 1fnn_A CDC6P, cell division co 75.2 1.8 6E-05 45.7 3.7 45 46-95 14-61 (389)
72 1xwi_A SKD1 protein; VPS4B, AA 74.8 0.7 2.4E-05 49.2 0.5 50 46-95 9-62 (322)
73 3hnw_A Uncharacterized protein 74.0 27 0.00093 33.4 11.3 64 347-415 72-135 (138)
74 3dkp_A Probable ATP-dependent 74.0 1.4 4.8E-05 43.9 2.4 25 68-94 58-82 (245)
75 1sxj_C Activator 1 40 kDa subu 73.7 1.5 5E-05 46.5 2.6 42 47-96 23-64 (340)
76 3uk6_A RUVB-like 2; hexameric 73.4 1.6 5.6E-05 46.0 2.9 47 45-96 40-88 (368)
77 4b4t_H 26S protease regulatory 73.3 1.7 5.9E-05 49.4 3.2 75 45-119 205-301 (467)
78 3syl_A Protein CBBX; photosynt 73.0 1.1 3.7E-05 46.3 1.3 20 76-95 65-84 (309)
79 1lv7_A FTSH; alpha/beta domain 72.7 0.62 2.1E-05 47.1 -0.6 46 45-95 8-62 (257)
80 3bor_A Human initiation factor 72.6 0.97 3.3E-05 45.3 0.8 26 68-95 59-84 (237)
81 1p9r_A General secretion pathw 72.2 1.7 5.8E-05 48.5 2.7 29 68-96 157-185 (418)
82 2pl3_A Probable ATP-dependent 71.8 1.7 5.9E-05 43.1 2.4 25 69-95 55-79 (236)
83 1t6n_A Probable ATP-dependent 70.7 1.8 6.1E-05 42.3 2.3 25 69-95 44-68 (220)
84 2x8a_A Nuclear valosin-contain 70.0 0.67 2.3E-05 48.3 -1.0 51 45-95 6-61 (274)
85 3jvv_A Twitching mobility prot 69.8 1.8 6.3E-05 47.2 2.3 28 69-96 114-141 (356)
86 3b6e_A Interferon-induced heli 69.8 0.99 3.4E-05 43.5 0.2 24 71-96 43-66 (216)
87 2kjq_A DNAA-related protein; s 69.0 1.6 5.6E-05 41.3 1.5 18 79-96 37-54 (149)
88 2c9o_A RUVB-like 1; hexameric 68.8 2.5 8.5E-05 47.0 3.2 47 44-95 32-80 (456)
89 2qby_B CDC6 homolog 3, cell di 68.8 2.4 8.1E-05 44.8 2.9 46 45-95 16-62 (384)
90 3ly5_A ATP-dependent RNA helic 68.7 1.6 5.4E-05 44.7 1.5 25 68-94 83-107 (262)
91 3iuy_A Probable ATP-dependent 68.7 2.1 7.3E-05 42.1 2.4 25 69-95 50-74 (228)
92 1wrb_A DJVLGB; RNA helicase, D 68.5 2.2 7.4E-05 42.9 2.4 25 69-95 53-77 (253)
93 2qz4_A Paraplegin; AAA+, SPG7, 68.3 3.6 0.00012 41.1 3.9 20 77-96 38-57 (262)
94 3cvf_A Homer-3, homer protein 68.2 8.4 0.00029 33.9 5.7 64 709-772 9-72 (79)
95 3cve_A Homer protein homolog 1 68.0 9.6 0.00033 33.0 5.9 63 710-772 4-66 (72)
96 3vfd_A Spastin; ATPase, microt 67.9 1.2 4E-05 48.4 0.2 51 45-95 111-165 (389)
97 3eie_A Vacuolar protein sortin 67.9 1.1 3.8E-05 47.3 0.1 50 46-95 15-68 (322)
98 2qp9_X Vacuolar protein sortin 67.3 1.3 4.5E-05 47.7 0.5 51 45-95 47-101 (355)
99 3vkg_A Dynein heavy chain, cyt 66.9 1.1E+02 0.0039 42.6 18.6 93 713-816 2021-2123(3245)
100 1njg_A DNA polymerase III subu 66.9 2.9 0.0001 39.9 2.8 18 79-96 46-63 (250)
101 3eiq_A Eukaryotic initiation f 66.8 2.6 8.7E-05 44.8 2.6 26 68-95 69-94 (414)
102 3llm_A ATP-dependent RNA helic 66.7 2.1 7.3E-05 42.8 1.9 26 68-95 68-93 (235)
103 3fe2_A Probable ATP-dependent 66.4 2.3 7.9E-05 42.5 2.1 25 69-95 59-83 (242)
104 3fmo_B ATP-dependent RNA helic 66.3 2.4 8.1E-05 44.5 2.2 28 68-95 121-148 (300)
105 2oxc_A Probable ATP-dependent 65.7 2.7 9.1E-05 41.7 2.4 23 70-94 55-77 (230)
106 2qby_A CDC6 homolog 1, cell di 65.3 1.6 5.4E-05 45.7 0.7 20 76-95 43-62 (386)
107 1ofh_A ATP-dependent HSL prote 65.3 2.9 9.9E-05 42.6 2.6 18 78-95 50-67 (310)
108 3co5_A Putative two-component 65.1 3.4 0.00012 38.3 2.9 20 77-96 26-45 (143)
109 3ber_A Probable ATP-dependent 64.8 2.9 9.8E-05 42.4 2.4 25 69-95 73-97 (249)
110 2zan_A Vacuolar protein sortin 64.2 1.3 4.4E-05 49.4 -0.3 51 45-95 130-184 (444)
111 1iqp_A RFCS; clamp loader, ext 63.9 3.4 0.00012 42.3 2.9 41 48-96 24-64 (327)
112 1u0j_A DNA replication protein 63.9 3.4 0.00012 43.7 2.8 30 67-96 90-122 (267)
113 3fht_A ATP-dependent RNA helic 63.0 3.2 0.00011 43.9 2.4 28 68-95 54-81 (412)
114 1q0u_A Bstdead; DEAD protein, 63.0 2 6.7E-05 42.2 0.8 23 70-94 35-57 (219)
115 4fcw_A Chaperone protein CLPB; 62.9 2.9 0.0001 42.9 2.1 17 79-95 48-64 (311)
116 3pey_A ATP-dependent RNA helic 62.8 3.1 0.0001 43.5 2.3 27 69-95 35-61 (395)
117 3fmp_B ATP-dependent RNA helic 62.5 3.1 0.00011 45.8 2.4 27 68-94 121-147 (479)
118 2eyu_A Twitching motility prot 62.3 2.8 9.7E-05 43.5 1.9 21 76-96 23-43 (261)
119 3hu3_A Transitional endoplasmi 62.1 2.5 8.4E-05 48.1 1.5 50 46-95 201-255 (489)
120 2j0s_A ATP-dependent RNA helic 61.9 3.2 0.00011 44.2 2.2 26 68-95 66-91 (410)
121 3n70_A Transport activator; si 61.8 3.2 0.00011 38.5 2.0 20 76-95 22-41 (145)
122 1sxj_D Activator 1 41 kDa subu 61.3 2.8 9.7E-05 43.7 1.7 42 47-96 35-76 (353)
123 3pfi_A Holliday junction ATP-d 60.5 4.7 0.00016 42.1 3.2 44 47-95 27-72 (338)
124 3opc_A Uncharacterized protein 60.4 22 0.00077 33.7 7.7 87 741-831 15-108 (154)
125 2z0m_A 337AA long hypothetical 59.7 3.7 0.00013 42.0 2.2 24 70-95 25-48 (337)
126 1s2m_A Putative ATP-dependent 59.7 3.5 0.00012 43.7 2.1 25 69-95 51-75 (400)
127 1tue_A Replication protein E1; 59.3 3 0.0001 42.9 1.4 27 70-96 48-76 (212)
128 3h1t_A Type I site-specific re 58.6 4.4 0.00015 46.1 2.8 27 69-96 190-216 (590)
129 4b3f_X DNA-binding protein smu 58.1 4 0.00014 47.5 2.3 27 69-96 197-223 (646)
130 2oap_1 GSPE-2, type II secreti 57.6 4.7 0.00016 46.1 2.8 21 74-96 258-278 (511)
131 2chq_A Replication factor C sm 57.3 3.3 0.00011 42.3 1.3 22 75-96 35-56 (319)
132 1hqc_A RUVB; extended AAA-ATPa 57.3 6.5 0.00022 40.5 3.6 44 47-95 10-55 (324)
133 1w5s_A Origin recognition comp 57.2 5.2 0.00018 42.5 2.9 26 71-96 40-70 (412)
134 1gvn_B Zeta; postsegregational 57.0 9 0.00031 40.1 4.6 32 64-95 14-50 (287)
135 2i4i_A ATP-dependent RNA helic 56.8 4.5 0.00015 43.0 2.3 24 70-95 46-69 (417)
136 3s9g_A Protein hexim1; cyclin 56.5 37 0.0013 31.0 7.7 56 708-763 32-87 (104)
137 2fz4_A DNA repair protein RAD2 56.3 4.1 0.00014 41.2 1.8 25 70-96 102-126 (237)
138 2r44_A Uncharacterized protein 56.0 3.1 0.00011 43.6 0.8 34 57-96 31-64 (331)
139 3o0z_A RHO-associated protein 55.4 66 0.0022 31.9 10.1 52 369-420 55-106 (168)
140 3hnw_A Uncharacterized protein 55.3 23 0.00078 33.9 6.7 17 662-678 29-45 (138)
141 2ocy_A RAB guanine nucleotide 54.6 39 0.0013 33.1 8.3 72 720-802 13-84 (154)
142 2ce7_A Cell division protein F 54.1 3.3 0.00011 47.1 0.7 47 44-95 11-66 (476)
143 2ewv_A Twitching motility prot 54.0 3.6 0.00012 44.9 1.0 28 69-96 127-154 (372)
144 1in4_A RUVB, holliday junction 53.7 6.9 0.00024 41.5 3.1 17 79-95 52-68 (334)
145 3oja_B Anopheles plasmodium-re 52.8 18 0.00061 41.1 6.5 57 708-764 504-560 (597)
146 2v66_B Nuclear distribution pr 52.7 76 0.0026 29.5 9.4 84 710-800 14-101 (111)
147 3u61_B DNA polymerase accessor 52.6 7.7 0.00026 40.3 3.2 19 78-96 48-66 (324)
148 1sxj_B Activator 1 37 kDa subu 52.5 6 0.00021 40.4 2.3 23 74-96 38-60 (323)
149 1xti_A Probable ATP-dependent 52.2 5.6 0.00019 41.7 2.1 25 69-95 38-62 (391)
150 3a7p_A Autophagy protein 16; c 51.9 28 0.00096 34.0 6.7 57 709-765 71-134 (152)
151 1jr3_A DNA polymerase III subu 51.7 8.9 0.0003 40.2 3.6 20 77-96 37-56 (373)
152 3i5x_A ATP-dependent RNA helic 51.3 7.1 0.00024 43.8 2.9 27 68-94 101-127 (563)
153 3oiy_A Reverse gyrase helicase 51.3 5.8 0.0002 42.6 2.1 24 69-94 29-52 (414)
154 2fup_A Hypothetical protein PA 51.2 13 0.00046 34.9 4.4 91 737-831 10-109 (157)
155 1rif_A DAR protein, DNA helica 51.2 4.3 0.00015 41.6 1.0 25 70-96 122-146 (282)
156 3pvs_A Replication-associated 51.0 5 0.00017 45.0 1.5 38 57-95 30-67 (447)
157 3oja_B Anopheles plasmodium-re 50.4 83 0.0028 35.6 11.5 17 344-360 478-494 (597)
158 1deb_A APC protein, adenomatou 50.4 19 0.00065 29.1 4.3 44 741-795 3-46 (54)
159 2eqb_B RAB guanine nucleotide 50.3 66 0.0023 29.3 8.4 13 347-359 9-21 (97)
160 1n0w_A DNA repair protein RAD5 50.0 6.4 0.00022 38.6 2.0 29 68-96 11-42 (243)
161 1hv8_A Putative ATP-dependent 49.9 6.3 0.00021 40.7 2.0 25 70-95 37-61 (367)
162 3fho_A ATP-dependent RNA helic 49.8 6.6 0.00022 44.1 2.3 26 70-95 150-175 (508)
163 3pxg_A Negative regulator of g 49.7 7.8 0.00027 43.3 2.9 28 69-96 192-219 (468)
164 2w6b_A RHO guanine nucleotide 49.5 80 0.0027 26.0 7.8 40 370-409 11-50 (56)
165 1fuu_A Yeast initiation factor 49.5 4 0.00014 42.8 0.5 25 69-95 51-75 (394)
166 4a2p_A RIG-I, retinoic acid in 49.0 7.2 0.00025 43.0 2.4 25 69-95 15-39 (556)
167 2db3_A ATP-dependent RNA helic 48.8 6.9 0.00024 42.9 2.2 25 69-95 86-110 (434)
168 1qvr_A CLPB protein; coiled co 48.7 4.5 0.00015 48.7 0.8 30 68-97 181-210 (854)
169 2v1x_A ATP-dependent DNA helic 47.8 9.1 0.00031 44.3 3.1 26 68-95 51-76 (591)
170 1w36_D RECD, exodeoxyribonucle 47.7 6.9 0.00024 45.4 2.1 19 78-96 164-182 (608)
171 2ocy_A RAB guanine nucleotide 47.3 59 0.002 31.8 8.2 47 371-417 46-92 (154)
172 1um8_A ATP-dependent CLP prote 47.3 8 0.00027 41.4 2.4 18 78-95 72-89 (376)
173 2dhr_A FTSH; AAA+ protein, hex 47.1 3.1 0.00011 47.5 -0.9 47 44-95 26-81 (499)
174 3upu_A ATP-dependent DNA helic 46.9 10 0.00035 42.1 3.2 36 56-96 28-63 (459)
175 1sxj_E Activator 1 40 kDa subu 46.9 5.7 0.0002 41.6 1.1 16 81-96 39-54 (354)
176 2p5t_B PEZT; postsegregational 46.9 13 0.00043 37.8 3.7 33 62-94 11-48 (253)
177 3tbk_A RIG-I helicase domain; 46.8 8.2 0.00028 42.4 2.4 24 70-95 13-36 (555)
178 1hjb_A Ccaat/enhancer binding 46.7 29 0.00099 30.9 5.4 56 543-598 28-87 (87)
179 2jee_A YIIU; FTSZ, septum, coi 46.6 87 0.003 27.6 8.3 71 540-610 9-79 (81)
180 3u1c_A Tropomyosin alpha-1 cha 46.2 1.1E+02 0.0038 27.5 9.4 58 714-771 17-74 (101)
181 1ojl_A Transcriptional regulat 46.1 9.1 0.00031 40.2 2.6 20 76-95 23-42 (304)
182 3u59_A Tropomyosin beta chain; 45.2 1.1E+02 0.0038 27.4 9.2 17 784-800 73-89 (101)
183 2w0m_A SSO2452; RECA, SSPF, un 45.2 7.6 0.00026 37.5 1.7 29 68-96 10-41 (235)
184 2cvh_A DNA repair and recombin 45.1 8.7 0.0003 37.0 2.0 29 68-96 7-38 (220)
185 2gk6_A Regulator of nonsense t 44.9 8.3 0.00028 44.8 2.2 25 70-96 189-213 (624)
186 3c8u_A Fructokinase; YP_612366 44.8 12 0.0004 36.7 2.9 29 67-95 9-39 (208)
187 3ol1_A Vimentin; structural ge 44.1 1.6E+02 0.0055 27.2 10.4 33 382-414 68-100 (119)
188 2dfs_A Myosin-5A; myosin-V, in 43.6 77 0.0026 39.6 10.5 21 75-95 153-173 (1080)
189 3nmd_A CGMP dependent protein 43.3 96 0.0033 26.8 7.9 28 392-419 42-69 (72)
190 4gl2_A Interferon-induced heli 43.3 9.4 0.00032 44.0 2.3 25 69-95 15-39 (699)
191 3sqw_A ATP-dependent RNA helic 43.2 11 0.00038 42.8 2.9 26 69-94 51-76 (579)
192 3hws_A ATP-dependent CLP prote 42.7 6.4 0.00022 42.0 0.7 18 78-95 51-68 (363)
193 3sja_C Golgi to ER traffic pro 42.7 1.1E+02 0.0037 26.0 8.0 51 342-392 5-55 (65)
194 1rz3_A Hypothetical protein rb 42.5 15 0.0005 35.8 3.2 28 68-95 9-39 (201)
195 2fwr_A DNA repair protein RAD2 42.4 9 0.00031 41.9 1.9 24 70-95 102-125 (472)
196 3s4r_A Vimentin; alpha-helix, 42.4 1.1E+02 0.0039 27.1 8.7 27 367-393 54-80 (93)
197 4a74_A DNA repair and recombin 42.3 11 0.00037 36.6 2.2 28 68-95 12-42 (231)
198 1wp9_A ATP-dependent RNA helic 42.3 9.3 0.00032 40.5 1.9 25 69-96 17-41 (494)
199 1c4o_A DNA nucleotide excision 42.0 14 0.00048 43.3 3.5 79 46-130 2-88 (664)
200 3lw7_A Adenylate kinase relate 41.6 7.3 0.00025 35.6 0.8 16 80-95 3-18 (179)
201 4gp7_A Metallophosphoesterase; 41.5 7.1 0.00024 37.2 0.8 18 79-96 10-27 (171)
202 3nbx_X ATPase RAVA; AAA+ ATPas 41.5 12 0.0004 42.8 2.6 25 69-95 34-58 (500)
203 3b85_A Phosphate starvation-in 41.4 11 0.00039 37.6 2.3 26 68-95 14-39 (208)
204 1ic2_A Tropomyosin alpha chain 41.3 50 0.0017 28.5 6.1 58 714-771 14-71 (81)
205 3lfu_A DNA helicase II; SF1 he 40.9 8.3 0.00028 44.1 1.3 21 76-96 20-40 (647)
206 3b9q_A Chloroplast SRP recepto 40.0 15 0.00052 38.9 3.1 17 79-95 101-117 (302)
207 3pxi_A Negative regulator of g 39.8 17 0.00057 43.0 3.7 28 69-96 192-219 (758)
208 3i00_A HIP-I, huntingtin-inter 39.7 2.4E+02 0.0082 26.4 11.9 71 341-419 13-83 (120)
209 4h22_A Leucine-rich repeat fli 39.6 72 0.0025 29.3 7.0 49 537-585 30-78 (103)
210 1sxj_A Activator 1 95 kDa subu 39.5 14 0.0005 41.6 3.0 19 78-96 77-95 (516)
211 3cf2_A TER ATPase, transitiona 39.1 15 0.0005 44.6 3.1 51 45-95 200-255 (806)
212 2qag_C Septin-7; cell cycle, c 39.0 7.7 0.00026 43.3 0.7 23 73-95 26-48 (418)
213 2qnr_A Septin-2, protein NEDD5 39.0 7.8 0.00027 40.8 0.7 24 72-95 12-35 (301)
214 3tr0_A Guanylate kinase, GMP k 38.9 8.2 0.00028 36.9 0.8 16 80-95 9-24 (205)
215 4ag6_A VIRB4 ATPase, type IV s 38.6 7.8 0.00027 41.9 0.6 19 78-96 35-53 (392)
216 2ykg_A Probable ATP-dependent 38.3 14 0.00047 42.6 2.7 23 70-94 22-44 (696)
217 3tau_A Guanylate kinase, GMP k 38.2 9.7 0.00033 37.4 1.2 17 79-95 9-25 (208)
218 1r6b_X CLPA protein; AAA+, N-t 38.2 15 0.00052 43.2 3.0 28 69-96 198-225 (758)
219 3pxi_A Negative regulator of g 38.1 17 0.00059 42.9 3.5 37 58-95 496-538 (758)
220 1ypw_A Transitional endoplasmi 38.0 26 0.00089 42.1 5.0 52 44-95 199-255 (806)
221 1qvr_A CLPB protein; coiled co 37.8 18 0.00063 43.4 3.7 17 79-95 589-605 (854)
222 2efk_A CDC42-interacting prote 37.7 3.3E+02 0.011 27.7 12.8 50 706-755 102-151 (301)
223 1ic2_A Tropomyosin alpha chain 37.6 42 0.0014 29.0 5.0 51 716-766 2-52 (81)
224 2dr3_A UPF0273 protein PH0284; 37.5 12 0.0004 36.7 1.6 27 70-96 12-41 (247)
225 3cvf_A Homer-3, homer protein 37.4 1.4E+02 0.0046 26.3 8.1 33 723-755 2-34 (79)
226 3sjb_C Golgi to ER traffic pro 37.3 1.7E+02 0.0059 26.4 8.9 57 340-396 20-76 (93)
227 1kgd_A CASK, peripheral plasma 37.0 9.1 0.00031 36.6 0.7 16 80-95 7-22 (180)
228 3a00_A Guanylate kinase, GMP k 36.4 9 0.00031 36.8 0.6 16 80-95 3-18 (186)
229 1zp6_A Hypothetical protein AT 35.9 10 0.00036 35.9 0.9 17 79-95 10-26 (191)
230 1r6b_X CLPA protein; AAA+, N-t 35.9 22 0.00074 41.9 3.8 17 79-95 489-505 (758)
231 2xzl_A ATP-dependent helicase 35.7 13 0.00045 44.7 2.0 18 79-96 376-393 (802)
232 2qen_A Walker-type ATPase; unk 35.7 17 0.00058 37.3 2.6 18 79-96 32-49 (350)
233 3qh9_A Liprin-beta-2; coiled-c 35.6 73 0.0025 28.1 6.1 48 534-581 22-77 (81)
234 2wjy_A Regulator of nonsense t 35.6 14 0.00048 44.5 2.2 25 70-96 365-389 (800)
235 1e9r_A Conjugal transfer prote 35.5 8.2 0.00028 42.2 0.2 18 78-95 53-70 (437)
236 2jlq_A Serine protease subunit 35.5 11 0.00037 41.8 1.1 24 70-94 12-35 (451)
237 3sop_A Neuronal-specific septi 35.4 9.5 0.00033 39.7 0.6 19 77-95 1-19 (270)
238 3e70_C DPA, signal recognition 35.3 26 0.00088 37.7 4.0 18 78-95 129-146 (328)
239 1ly1_A Polynucleotide kinase; 35.1 11 0.00038 35.0 1.0 15 80-94 4-18 (181)
240 2oca_A DAR protein, ATP-depend 34.5 13 0.00044 41.2 1.5 24 71-96 123-146 (510)
241 1lvg_A Guanylate kinase, GMP k 34.4 9.7 0.00033 37.2 0.5 16 80-95 6-21 (198)
242 3qh9_A Liprin-beta-2; coiled-c 34.4 1.8E+02 0.0062 25.6 8.4 53 367-419 24-76 (81)
243 3e1s_A Exodeoxyribonuclease V, 34.4 15 0.0005 42.6 2.0 26 69-96 197-222 (574)
244 3ghg_A Fibrinogen alpha chain; 34.2 69 0.0023 36.9 7.2 80 537-616 64-154 (562)
245 2e7s_A RAB guanine nucleotide 34.1 52 0.0018 31.6 5.4 67 723-800 4-70 (135)
246 2v4h_A NF-kappa-B essential mo 34.0 1.3E+02 0.0043 28.0 7.7 45 345-391 47-91 (110)
247 2ehv_A Hypothetical protein PH 33.9 11 0.00038 36.9 0.8 18 79-96 31-48 (251)
248 2b8t_A Thymidine kinase; deoxy 33.9 9.3 0.00032 39.0 0.3 20 78-97 12-31 (223)
249 2orw_A Thymidine kinase; TMTK, 33.7 7.9 0.00027 37.8 -0.3 18 80-97 5-22 (184)
250 3trf_A Shikimate kinase, SK; a 33.7 12 0.00041 35.3 1.0 15 80-94 7-21 (185)
251 2v66_B Nuclear distribution pr 33.3 3E+02 0.01 25.5 10.5 19 345-363 12-30 (111)
252 1uaa_A REP helicase, protein ( 33.1 13 0.00045 43.2 1.3 20 77-96 14-33 (673)
253 2r8r_A Sensor protein; KDPD, P 33.1 11 0.00037 39.1 0.5 19 79-97 7-25 (228)
254 1rj9_A FTSY, signal recognitio 33.1 13 0.00043 39.6 1.1 17 79-95 103-119 (304)
255 3mq9_A Bone marrow stromal ant 33.1 1.9E+02 0.0066 31.7 10.7 55 365-419 400-465 (471)
256 2efl_A Formin-binding protein 32.9 4E+02 0.014 27.0 18.0 43 714-756 117-159 (305)
257 2og2_A Putative signal recogni 32.9 23 0.0008 38.6 3.2 17 79-95 158-174 (359)
258 1qhx_A CPT, protein (chloramph 32.9 13 0.00044 34.8 1.0 17 79-95 4-20 (178)
259 4a4z_A Antiviral helicase SKI2 32.6 18 0.00061 44.7 2.5 24 69-94 47-70 (997)
260 1ye8_A Protein THEP1, hypothet 32.6 11 0.00038 36.6 0.5 15 81-95 3-17 (178)
261 2j41_A Guanylate kinase; GMP, 32.5 12 0.00041 35.7 0.8 16 80-95 8-23 (207)
262 4a2q_A RIG-I, retinoic acid in 32.4 18 0.00062 42.9 2.4 25 69-95 256-280 (797)
263 1wt6_A Myotonin-protein kinase 32.2 87 0.003 27.6 6.0 44 717-760 28-71 (81)
264 1lkx_A Myosin IE heavy chain; 31.9 26 0.00087 41.8 3.5 35 61-96 77-112 (697)
265 3iij_A Coilin-interacting nucl 31.9 13 0.00043 35.1 0.8 16 80-95 13-28 (180)
266 1gm5_A RECG; helicase, replica 31.9 22 0.00074 42.8 3.0 38 54-95 369-406 (780)
267 3lnc_A Guanylate kinase, GMP k 31.8 15 0.00051 36.4 1.3 16 80-95 29-44 (231)
268 4a2w_A RIG-I, retinoic acid in 31.7 17 0.00058 44.3 2.1 25 69-95 256-280 (936)
269 2v71_A Nuclear distribution pr 31.5 2E+02 0.0069 28.9 9.4 84 710-800 67-154 (189)
270 2bdt_A BH3686; alpha-beta prot 31.3 13 0.00044 35.4 0.7 16 80-95 4-19 (189)
271 1oyw_A RECQ helicase, ATP-depe 31.1 11 0.00038 42.6 0.3 25 69-95 33-57 (523)
272 3oja_A Leucine-rich immune mol 31.0 69 0.0024 35.5 6.7 75 711-785 412-486 (487)
273 2fna_A Conserved hypothetical 30.9 15 0.00051 37.8 1.2 18 79-96 31-48 (357)
274 3ghg_A Fibrinogen alpha chain; 30.7 1.3E+02 0.0044 34.8 8.6 54 710-764 61-133 (562)
275 3kl4_A SRP54, signal recogniti 30.6 40 0.0014 37.8 4.7 18 79-96 98-115 (433)
276 2gza_A Type IV secretion syste 30.5 12 0.00042 40.4 0.5 20 75-96 174-193 (361)
277 2v4h_A NF-kappa-B essential mo 30.5 1.3E+02 0.0043 28.0 7.0 81 714-812 25-105 (110)
278 1a5t_A Delta prime, HOLB; zinc 30.5 27 0.00094 36.8 3.2 34 58-95 7-41 (334)
279 3uie_A Adenylyl-sulfate kinase 30.4 19 0.00065 34.8 1.8 20 76-95 23-42 (200)
280 2pt7_A CAG-ALFA; ATPase, prote 30.3 13 0.00043 39.9 0.5 19 75-95 170-188 (330)
281 3kta_A Chromosome segregation 30.2 13 0.00046 35.0 0.6 16 80-95 28-43 (182)
282 3tnu_B Keratin, type II cytosk 30.1 98 0.0033 28.8 6.6 45 728-772 30-74 (129)
283 1w9i_A Myosin II heavy chain; 30.0 29 0.00098 41.9 3.5 27 69-95 162-189 (770)
284 1odf_A YGR205W, hypothetical 3 29.9 31 0.001 36.3 3.4 37 59-95 10-48 (290)
285 2jee_A YIIU; FTSZ, septum, coi 29.8 1.5E+02 0.0052 26.1 7.2 44 722-765 29-72 (81)
286 2v26_A Myosin VI; calmodulin-b 29.7 29 0.00099 41.9 3.5 34 61-95 123-157 (784)
287 1kht_A Adenylate kinase; phosp 29.6 15 0.00051 34.5 0.8 16 79-94 4-19 (192)
288 1znw_A Guanylate kinase, GMP k 29.6 14 0.00049 36.0 0.7 16 80-95 22-37 (207)
289 3tnu_A Keratin, type I cytoske 29.5 77 0.0026 29.7 5.7 46 728-773 32-77 (131)
290 2v6i_A RNA helicase; membrane, 29.5 21 0.00071 39.3 2.1 16 80-95 4-19 (431)
291 4aj5_A SKA1, spindle and kinet 28.8 35 0.0012 30.7 3.0 44 709-752 40-83 (91)
292 2px0_A Flagellar biosynthesis 28.8 14 0.00049 38.9 0.6 18 79-96 106-123 (296)
293 2z83_A Helicase/nucleoside tri 28.7 21 0.0007 39.7 1.9 16 80-95 23-38 (459)
294 2oto_A M protein; helical coil 28.6 3E+02 0.01 26.2 9.9 48 707-754 22-70 (155)
295 1g8x_A Myosin II heavy chain f 28.6 29 0.001 43.0 3.4 34 61-95 155-189 (1010)
296 3u59_A Tropomyosin beta chain; 28.6 1.8E+02 0.0063 25.9 7.9 64 537-600 9-72 (101)
297 3u1c_A Tropomyosin alpha-1 cha 28.4 1.7E+02 0.0057 26.3 7.6 87 715-801 4-90 (101)
298 1kag_A SKI, shikimate kinase I 28.3 16 0.00055 33.9 0.8 16 80-95 6-21 (173)
299 3vaa_A Shikimate kinase, SK; s 28.2 17 0.00059 35.1 1.0 16 80-95 27-42 (199)
300 3he5_A Synzip1; heterodimeric 28.2 2.1E+02 0.0072 22.2 6.8 40 375-414 9-48 (49)
301 3bas_A Myosin heavy chain, str 28.1 3E+02 0.01 24.0 11.4 71 341-416 12-82 (89)
302 2ycu_A Non muscle myosin 2C, a 28.0 32 0.0011 42.6 3.5 34 61-95 129-163 (995)
303 1xx6_A Thymidine kinase; NESG, 27.9 12 0.00041 37.2 -0.2 18 80-97 10-27 (191)
304 3kb2_A SPBC2 prophage-derived 27.8 18 0.0006 33.3 1.0 16 80-95 3-18 (173)
305 1z6g_A Guanylate kinase; struc 27.7 15 0.00051 36.5 0.5 16 80-95 25-40 (218)
306 1w7j_A Myosin VA; motor protei 27.5 33 0.0011 41.4 3.5 21 75-95 153-173 (795)
307 1kk8_A Myosin heavy chain, str 27.4 30 0.001 42.0 3.2 27 69-95 159-186 (837)
308 1j8m_F SRP54, signal recogniti 27.4 43 0.0015 35.2 4.0 17 80-96 100-116 (297)
309 1yks_A Genome polyprotein [con 27.3 20 0.0007 39.5 1.6 20 74-95 6-25 (440)
310 2ze6_A Isopentenyl transferase 27.2 17 0.00057 37.1 0.8 15 80-94 3-17 (253)
311 4db1_A Myosin-7; S1DC, cardiac 27.1 34 0.0012 41.3 3.5 34 61-95 154-188 (783)
312 1moz_A ARL1, ADP-ribosylation 27.0 23 0.00078 32.7 1.6 27 69-95 8-35 (183)
313 1f2t_A RAD50 ABC-ATPase; DNA d 27.0 19 0.00064 33.9 1.0 16 80-95 25-40 (149)
314 2efr_A General control protein 26.8 2.4E+02 0.0082 27.5 8.8 74 726-799 76-149 (155)
315 3t5d_A Septin-7; GTP-binding p 26.8 16 0.00056 37.3 0.6 22 74-95 4-25 (274)
316 1gku_B Reverse gyrase, TOP-RG; 26.7 27 0.00091 43.3 2.6 23 69-93 64-86 (1054)
317 2i3b_A HCR-ntpase, human cance 26.6 16 0.00055 36.0 0.5 16 80-95 3-18 (189)
318 1knq_A Gluconate kinase; ALFA/ 26.5 18 0.00061 33.9 0.8 17 79-95 9-25 (175)
319 3swk_A Vimentin; cytoskeleton, 26.4 1.9E+02 0.0064 25.4 7.3 31 384-414 50-80 (86)
320 2b9c_A Striated-muscle alpha t 26.3 3.4E+02 0.012 26.1 9.7 66 740-805 51-116 (147)
321 2yhs_A FTSY, cell division pro 26.3 29 0.001 39.8 2.6 16 80-95 295-310 (503)
322 2rhm_A Putative kinase; P-loop 26.0 18 0.00061 34.1 0.7 17 79-95 6-22 (193)
323 3crv_A XPD/RAD3 related DNA he 26.0 29 0.00099 39.4 2.5 27 67-95 13-39 (551)
324 3m6a_A ATP-dependent protease 26.0 40 0.0014 38.5 3.7 18 78-95 108-125 (543)
325 2d7d_A Uvrabc system protein B 25.9 39 0.0013 39.6 3.6 86 45-135 4-97 (661)
326 1tev_A UMP-CMP kinase; ploop, 25.8 19 0.00064 33.8 0.8 15 80-94 5-19 (196)
327 1v5w_A DMC1, meiotic recombina 25.7 30 0.001 37.0 2.4 29 68-96 109-140 (343)
328 2xau_A PRE-mRNA-splicing facto 25.6 22 0.00076 42.5 1.6 24 70-94 102-125 (773)
329 2p6r_A Afuhel308 helicase; pro 25.4 15 0.00051 42.9 0.0 30 56-95 28-57 (702)
330 2eyq_A TRCF, transcription-rep 25.4 45 0.0015 41.8 4.3 27 68-94 614-640 (1151)
331 2qag_A Septin-2, protein NEDD5 25.3 20 0.00067 38.8 0.9 24 72-95 31-54 (361)
332 2zj8_A DNA helicase, putative 25.3 15 0.00053 42.9 0.1 20 74-95 37-56 (720)
333 2ga8_A Hypothetical 39.9 kDa p 25.3 43 0.0015 36.8 3.6 21 75-95 21-41 (359)
334 3cm0_A Adenylate kinase; ATP-b 25.2 21 0.00072 33.5 1.0 15 80-94 6-20 (186)
335 3dm5_A SRP54, signal recogniti 25.2 56 0.0019 36.8 4.6 19 78-96 100-118 (443)
336 1uf9_A TT1252 protein; P-loop, 25.2 24 0.00082 33.5 1.4 21 75-95 5-25 (203)
337 4etp_A Kinesin-like protein KA 25.1 87 0.003 34.7 6.1 61 714-774 4-64 (403)
338 3okq_A BUD site selection prot 25.1 3.6E+02 0.012 26.0 9.5 49 345-393 30-78 (141)
339 4anj_A Unconventional myosin-V 25.1 39 0.0013 42.2 3.5 34 61-95 127-161 (1052)
340 2qor_A Guanylate kinase; phosp 25.0 20 0.00068 34.8 0.8 16 80-95 14-29 (204)
341 2xgj_A ATP-dependent RNA helic 24.9 25 0.00085 43.5 1.8 23 71-95 96-118 (1010)
342 2v3c_C SRP54, signal recogniti 24.5 62 0.0021 36.1 4.8 17 80-96 101-117 (432)
343 1nks_A Adenylate kinase; therm 24.4 20 0.00069 33.5 0.7 15 80-94 3-17 (194)
344 1y63_A LMAJ004144AAA protein; 24.3 21 0.00071 34.1 0.8 15 80-94 12-26 (184)
345 1svm_A Large T antigen; AAA+ f 24.3 37 0.0013 37.3 2.9 17 79-95 170-186 (377)
346 3rc3_A ATP-dependent RNA helic 24.2 20 0.00068 42.4 0.8 14 80-93 157-170 (677)
347 3brv_B NF-kappa-B essential mo 24.2 1E+02 0.0035 26.5 4.9 50 720-772 15-64 (70)
348 2vl7_A XPD; helicase, unknown 24.2 33 0.0011 38.9 2.6 35 55-95 9-43 (540)
349 3viq_B Mating-type switching p 24.2 1.7E+02 0.0057 26.1 6.4 65 708-772 3-72 (85)
350 1e6c_A Shikimate kinase; phosp 24.2 21 0.00072 33.0 0.8 15 80-94 4-18 (173)
351 4dyl_A Tyrosine-protein kinase 24.2 4.3E+02 0.015 28.9 11.4 37 719-755 118-155 (406)
352 3k1j_A LON protease, ATP-depen 24.1 33 0.0011 39.5 2.6 40 46-95 38-77 (604)
353 2r2a_A Uncharacterized protein 24.1 19 0.00066 35.8 0.5 16 80-95 7-22 (199)
354 2va8_A SSO2462, SKI2-type heli 24.0 24 0.00081 41.1 1.4 17 79-95 47-63 (715)
355 2bbw_A Adenylate kinase 4, AK4 24.0 21 0.0007 35.8 0.7 17 79-95 28-44 (246)
356 1pjr_A PCRA; DNA repair, DNA r 24.0 22 0.00076 41.9 1.1 20 77-96 23-42 (724)
357 2vli_A Antibiotic resistance p 23.9 24 0.0008 33.0 1.1 16 79-94 6-21 (183)
358 2w00_A HSDR, R.ECOR124I; ATP-b 23.7 28 0.00097 43.2 2.0 16 81-96 303-318 (1038)
359 1vma_A Cell division protein F 23.7 25 0.00084 37.5 1.3 18 79-96 105-122 (306)
360 1htw_A HI0065; nucleotide-bind 23.6 57 0.002 31.1 3.8 17 79-95 34-50 (158)
361 3asz_A Uridine kinase; cytidin 23.6 20 0.0007 34.5 0.6 16 80-95 8-23 (211)
362 1pzn_A RAD51, DNA repair and r 23.3 35 0.0012 36.7 2.4 29 67-95 117-148 (349)
363 2i1q_A DNA repair and recombin 23.3 36 0.0012 35.6 2.4 30 67-96 84-116 (322)
364 3l4q_C Phosphatidylinositol 3- 23.2 1.6E+02 0.0054 29.2 6.8 58 708-765 98-155 (170)
365 2eqb_B RAB guanine nucleotide 23.0 4.1E+02 0.014 24.1 8.9 14 740-753 39-52 (97)
366 2z43_A DNA repair and recombin 22.8 31 0.0011 36.4 1.9 29 68-96 94-125 (324)
367 4eun_A Thermoresistant glucoki 22.7 23 0.00079 34.2 0.8 17 79-95 30-46 (200)
368 2bwj_A Adenylate kinase 5; pho 22.5 23 0.00077 33.6 0.7 15 80-94 14-28 (199)
369 2iyv_A Shikimate kinase, SK; t 22.5 24 0.00081 33.3 0.8 15 80-94 4-18 (184)
370 2gno_A DNA polymerase III, gam 22.5 32 0.0011 36.4 1.8 29 68-96 8-36 (305)
371 1via_A Shikimate kinase; struc 22.3 24 0.00083 33.1 0.8 15 80-94 6-20 (175)
372 3l9o_A ATP-dependent RNA helic 22.2 27 0.00094 43.5 1.5 24 69-94 192-215 (1108)
373 2xnx_M M protein, M1-BC1; cell 22.0 2E+02 0.0067 28.0 7.0 75 725-799 64-138 (146)
374 1sq5_A Pantothenate kinase; P- 21.9 49 0.0017 34.6 3.2 18 78-95 80-97 (308)
375 3o0z_A RHO-associated protein 21.9 4.3E+02 0.015 26.2 9.6 17 741-757 55-71 (168)
376 3t61_A Gluconokinase; PSI-biol 21.8 25 0.00087 33.8 0.9 18 78-95 18-35 (202)
377 2pt5_A Shikimate kinase, SK; a 21.8 25 0.00087 32.4 0.8 15 80-94 2-16 (168)
378 3tif_A Uncharacterized ABC tra 21.6 24 0.00084 35.7 0.7 16 80-95 33-48 (235)
379 1s96_A Guanylate kinase, GMP k 21.6 25 0.00085 35.3 0.8 16 80-95 18-33 (219)
380 2ce2_X GTPase HRAS; signaling 21.5 23 0.00077 31.6 0.4 16 80-95 5-20 (166)
381 1qf9_A UMP/CMP kinase, protein 21.5 25 0.00084 32.9 0.7 15 80-94 8-22 (194)
382 4ddu_A Reverse gyrase; topoiso 21.4 37 0.0013 42.3 2.4 25 68-94 85-109 (1104)
383 2ged_A SR-beta, signal recogni 21.3 24 0.00081 33.0 0.5 19 77-95 47-65 (193)
384 1cr0_A DNA primase/helicase; R 21.3 26 0.0009 35.9 0.9 28 69-96 24-53 (296)
385 1ukz_A Uridylate kinase; trans 21.1 26 0.0009 33.5 0.8 17 79-95 16-32 (203)
386 1w4r_A Thymidine kinase; type 21.0 28 0.00097 35.0 1.0 23 72-94 14-36 (195)
387 3crm_A TRNA delta(2)-isopenten 21.0 32 0.0011 37.1 1.6 16 79-94 6-21 (323)
388 1zd8_A GTP:AMP phosphotransfer 20.9 25 0.00087 34.6 0.7 16 80-95 9-24 (227)
389 2c95_A Adenylate kinase 1; tra 20.9 26 0.00087 33.1 0.7 16 79-94 10-25 (196)
390 1gk4_A Vimentin; intermediate 20.7 2.4E+02 0.0082 24.4 6.8 34 537-570 1-35 (84)
391 1aky_A Adenylate kinase; ATP:A 20.6 27 0.00093 34.1 0.8 15 80-94 6-20 (220)
392 3o8b_A HCV NS3 protease/helica 20.5 36 0.0012 40.3 2.0 18 79-96 233-250 (666)
393 1z56_A Ligase interacting fact 20.5 53 0.0018 34.3 2.9 48 700-747 151-198 (246)
394 3fb4_A Adenylate kinase; psych 20.5 27 0.00094 33.7 0.8 15 81-95 3-17 (216)
395 3qks_A DNA double-strand break 20.4 30 0.001 34.1 1.0 16 80-95 25-40 (203)
396 4a15_A XPD helicase, ATP-depen 20.4 40 0.0014 39.2 2.2 38 52-95 2-39 (620)
397 3bbp_D GRIP and coiled-coil do 20.3 1.1E+02 0.0038 26.2 4.3 46 708-760 17-62 (71)
398 2zr9_A Protein RECA, recombina 20.3 38 0.0013 36.6 1.9 29 68-96 47-79 (349)
399 3a4m_A L-seryl-tRNA(SEC) kinas 20.1 30 0.001 35.2 1.0 17 79-95 5-21 (260)
400 3q0x_A Centriole protein; cent 20.0 1E+02 0.0034 32.0 4.9 40 710-749 182-221 (228)
No 1
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-89 Score=749.47 Aligned_cols=332 Identities=56% Similarity=0.829 Sum_probs=292.3
Q ss_pred CCceEEEEEeCCCCCCccCCC----ceEEEcCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 1 MEKICVAVRVRPPVSLETSGG----VFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 1 mE~IrV~VRVRP~~~~E~~~~----~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
.++|+|+|||||++..|...+ ..|..+++.+... ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G 76 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV------DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQG 76 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET------TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTT
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC------CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999886432 2345555554321 234789999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccccccccc--ccceeeec
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN--QKLQIHES 154 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~--~~L~IrEd 154 (842)
||+||||||||||||||||+|+.+++|||||++++||+.++..++..|.|+|||+|||||+|+|||++.. .++.++++
T Consensus 77 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed 156 (349)
T 1t5c_A 77 YNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIRED 156 (349)
T ss_dssp CCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEET
T ss_pred CccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEEC
Confidence 9999999999999999999999999999999999999999988888999999999999999999998754 57999999
Q ss_pred CCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeecc
Q 003179 155 LEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLA 234 (842)
Q Consensus 155 ~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLA 234 (842)
+.++++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++...............|+|+|||||
T Consensus 157 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLA 236 (349)
T 1t5c_A 157 VNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLA 236 (349)
T ss_dssp TTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECC
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998776543333446788999999999
Q ss_pred CCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchH
Q 003179 235 GSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIE 314 (842)
Q Consensus 235 GSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~e 314 (842)
||||..++++.|.|++|+.+||+||++||+||.+|+++.+ ..|||||||||||||||+|||||+|+|||||||+ +++
T Consensus 237 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ 313 (349)
T 1t5c_A 237 GSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQV-GGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFD 313 (349)
T ss_dssp CGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCC-TTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSH
T ss_pred CCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCC-CCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHH
Confidence 9999999999999999999999999999999999998643 4699999999999999999999999999999997 589
Q ss_pred hHHHHHHHHHHhhcccccceeccccCH
Q 003179 315 ETKGTLQFASRAKRITNCVQVNEILTD 341 (842)
Q Consensus 315 ETLsTLrFAsRAk~IkN~~~vNe~~~~ 341 (842)
||++||+||+||++|+|.|++|+....
T Consensus 314 ETlsTL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 314 ETLTALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred HHHHHHHHHHHHhhcccCceeccCCCC
Confidence 999999999999999999999998764
No 2
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=2.5e-90 Score=759.30 Aligned_cols=340 Identities=47% Similarity=0.695 Sum_probs=287.1
Q ss_pred CceEEEEEeCCCCCCccCCC--ceEEEcC----CeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhc
Q 003179 2 EKICVAVRVRPPVSLETSGG--VFWKVED----NRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVE 75 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~--~~~~v~~----~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~ 75 (842)
++|+|+|||||+++.|...+ .++.+.+ +.+.+ .++.|.||+||+++++|++||+.++.|+|+++++
T Consensus 11 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~--------~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~ 82 (365)
T 2y65_A 11 DSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI--------AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLA 82 (365)
T ss_dssp EECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE--------TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred CCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE--------CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhC
Confidence 48999999999999885433 2344433 23322 3578999999999999999999999999999999
Q ss_pred CCCeeEEeeccCCCCccccccCCCC---CCChHHhHHHHHHHHHHhc-cccceEEEEeeeeeecccccccccccccccee
Q 003179 76 GFNGTVFAYGQTSSGKTFTMNGSAD---NPGVISLGVKDIFDAIQMM-SNREFLVRVSYMEIYNEEINDLLAVENQKLQI 151 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM~Gs~~---~~GIIPRal~dLF~~I~~~-~~~ef~V~VSylEIYNE~V~DLL~~~~~~L~I 151 (842)
|||+||||||||||||||||+|+.. ++|||||++++||+.+... .+..|.|+|||+|||||+|+|||++....+.+
T Consensus 83 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i 162 (365)
T 2y65_A 83 GYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSV 162 (365)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCE
T ss_pred CCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceE
Confidence 9999999999999999999999754 4699999999999999764 45689999999999999999999998889999
Q ss_pred eecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEe
Q 003179 152 HESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLV 231 (842)
Q Consensus 152 rEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LV 231 (842)
++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+..... .....|+|+||
T Consensus 163 ~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-----~~~~~skL~lV 237 (365)
T 2y65_A 163 HEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN-----QKKLSGKLYLV 237 (365)
T ss_dssp EECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT-----CCEEEEEEEEE
T ss_pred EECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC-----CCEeEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999876532 34578999999
Q ss_pred eccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcC
Q 003179 232 DLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEED 311 (842)
Q Consensus 232 DLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~ 311 (842)
|||||||..++++.|.+++|+.+||+||++||+||.+|+++. ..|||||||||||||||+|||||+|+|||||||+..
T Consensus 238 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~--~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~ 315 (365)
T 2y65_A 238 DLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGN--KTHIPYRDSKLTRILQESLGGNARTTIVICCSPASF 315 (365)
T ss_dssp ECCCCCC----------------CCHHHHHHHHHHHHHHHCC--CSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGG
T ss_pred ECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCccccCHHHHHHHhhcCCCccEEEEEEecCccC
Confidence 999999999999999999999999999999999999999863 369999999999999999999999999999999999
Q ss_pred chHhHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHH
Q 003179 312 HIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELR 356 (842)
Q Consensus 312 ~~eETLsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr 356 (842)
+++||++||+||+||++|+|.|++|+..+...+++++++|+++++
T Consensus 316 ~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 316 NESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp GHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred CHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888888888877765
No 3
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1e-89 Score=755.79 Aligned_cols=342 Identities=45% Similarity=0.682 Sum_probs=289.6
Q ss_pred CceEEEEEeCCCCCCccCCC--ceEEEc--CCeEEEeecCCC-CCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 2 EKICVAVRVRPPVSLETSGG--VFWKVE--DNRVSLHRQHDT-PVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~--~~~~v~--~~~v~l~~~~~~-~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
++|+|+|||||++..|...+ .++.++ ++.+.+..+... ....+.|+||+||+++++|++||+.+++|+|+++++|
T Consensus 21 ~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 100 (372)
T 3b6u_A 21 ESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQG 100 (372)
T ss_dssp CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhCC
Confidence 68999999999998885433 344543 456777655432 2345789999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCccccccCCCC---CCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccccccccc-ccceee
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSAD---NPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN-QKLQIH 152 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~---~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~-~~L~Ir 152 (842)
||+||||||||||||||||+|... ++|||||++++||..+....+..|.|+|||+|||||+|+|||++.. ..+.++
T Consensus 101 ~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~ 180 (372)
T 3b6u_A 101 FNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELK 180 (372)
T ss_dssp CCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCCBCEE
T ss_pred CeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCCceEE
Confidence 999999999999999999999754 4699999999999999988888999999999999999999999764 579999
Q ss_pred ecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEee
Q 003179 153 ESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVD 232 (842)
Q Consensus 153 Ed~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVD 232 (842)
+++.+|++|.||+++.|.|++|++++|..|..+|++++|.||..|||||+||+|+|++.....+ .....+.|+|+|||
T Consensus 181 e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~--~~~~~~~skL~lVD 258 (372)
T 3b6u_A 181 ERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLD--GENHIRVGKLNLVD 258 (372)
T ss_dssp EETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred ECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCC--CCcceEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998765332 23457889999999
Q ss_pred ccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCc
Q 003179 233 LAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDH 312 (842)
Q Consensus 233 LAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~ 312 (842)
||||||..++++.|.+++|+.+||+||++||+||.+|+++. ..|||||||||||||||+|||||+|+|||||||+..+
T Consensus 259 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~--~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~ 336 (372)
T 3b6u_A 259 LAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGK--STHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYN 336 (372)
T ss_dssp CCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC-----CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred CCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCC--CCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccC
Confidence 99999999999999999999999999999999999999753 4699999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcccccceeccccCHHHHHHHH
Q 003179 313 IEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQ 348 (842)
Q Consensus 313 ~eETLsTLrFAsRAk~IkN~~~vNe~~~~~~li~~l 348 (842)
++||++||+||+||++|+|.|++|+...+ +++++|
T Consensus 337 ~~ETlsTLrfA~rak~I~n~~~~n~~~~~-~~~~~~ 371 (372)
T 3b6u_A 337 VEETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREF 371 (372)
T ss_dssp HHHHHHHHHHHHHHTTCBCCCCCCC-----------
T ss_pred HHHHHHHHHHHHHHhhccccceecCChHH-HHHHhc
Confidence 99999999999999999999999998544 556554
No 4
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=8.4e-90 Score=755.90 Aligned_cols=344 Identities=36% Similarity=0.539 Sum_probs=303.3
Q ss_pred CceEEEEEeCCCCCCccCCCc--eEEEcCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCe
Q 003179 2 EKICVAVRVRPPVSLETSGGV--FWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNG 79 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~~--~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~ 79 (842)
++|+|+|||||++..|...+. .+... +.+.+..+.. ....+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 5 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~-~~~~v~~~~~-~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~ 81 (369)
T 3cob_A 5 GKIRVYCRLRPLCEKEIIAKERNAIRSV-DEFTVEHLWK-DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNV 81 (369)
T ss_dssp CBCEEEEEECCCCHHHHHTTCCBCEEEC-SSSEEEEECT-TSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEE
T ss_pred CCeEEEEECCCCChhhccCCCcEEEEcC-CcEEEEecCC-CCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCce
Confidence 689999999999988854332 23333 3333332211 2345789999999999999999999 68999999999999
Q ss_pred eEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccc-cceEEEEeeeeeecccccccccccc---ccceeeecC
Q 003179 80 TVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSN-REFLVRVSYMEIYNEEINDLLAVEN---QKLQIHESL 155 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~-~ef~V~VSylEIYNE~V~DLL~~~~---~~L~IrEd~ 155 (842)
||||||||||||||||+|+..++|||||++++||+.+..... ..|.|++||+|||||+|+|||++.. ..+.+++++
T Consensus 82 tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~ 161 (369)
T 3cob_A 82 CIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDS 161 (369)
T ss_dssp EEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECT
T ss_pred EEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECC
Confidence 999999999999999999999999999999999999987654 5899999999999999999998753 579999999
Q ss_pred CCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccC
Q 003179 156 EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAG 235 (842)
Q Consensus 156 ~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAG 235 (842)
.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++.... ......|+|+||||||
T Consensus 162 ~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skL~lVDLAG 236 (369)
T 3cob_A 162 KGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-----TQAIARGKLSFVDLAG 236 (369)
T ss_dssp TSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-----TCCEEEEEEEEEECCC
T ss_pred CCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC-----CCcEEEEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999987653 3356789999999999
Q ss_pred CccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHh
Q 003179 236 SERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEE 315 (842)
Q Consensus 236 SER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eE 315 (842)
|||..++++.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+++|
T Consensus 237 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~---~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~E 313 (369)
T 3cob_A 237 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG---NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDE 313 (369)
T ss_dssp SSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTT---CSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHH
T ss_pred CCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcC---CCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHH
Confidence 9999999999999999999999999999999999975 3599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHH
Q 003179 316 TKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKL 359 (842)
Q Consensus 316 TLsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr~~L 359 (842)
|++||+||+||++|+|.|.+|+.. ..+.+|+.++..|+.++
T Consensus 314 Tl~TLrfA~rak~i~~~~~~n~~~---~ei~~L~~~l~~~~~~~ 354 (369)
T 3cob_A 314 THNSLTYASRVRSIVNDPSKNVSS---KEVARLKKLVSYWKEQA 354 (369)
T ss_dssp HHHHHHHHHHHHTCBCCCCCCEEC---HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHhhcccCCcccCCH---HHHHHHHHHHHHHHHhc
Confidence 999999999999999999999886 34555555555555443
No 5
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1.9e-89 Score=748.64 Aligned_cols=333 Identities=46% Similarity=0.685 Sum_probs=273.8
Q ss_pred CceEEEEEeCCCCCCccCCC--ceEEEc--CCeEEEeecCC------CCCCCcceeecEeeCCCCChHHHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETSGG--VFWKVE--DNRVSLHRQHD------TPVSGTSYAFDHVFEETCSNARVYELLTKDIIH 71 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~--~~~~v~--~~~v~l~~~~~------~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~ 71 (842)
++|+|+|||||++..|...+ .++.++ ++.+.+..+.. .....+.|.||+||+++++|++||+.++.|+|+
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~ 83 (350)
T 2vvg_A 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLID 83 (350)
T ss_dssp CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHHH
Confidence 79999999999999885433 345543 45666654321 123457899999999999999999999999999
Q ss_pred HHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHh-ccccceEEEEeeeeeeccccccccccccccce
Q 003179 72 AAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQM-MSNREFLVRVSYMEIYNEEINDLLAVENQKLQ 150 (842)
Q Consensus 72 svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~-~~~~ef~V~VSylEIYNE~V~DLL~~~~~~L~ 150 (842)
++++|||+||||||||||||||||+|+.+++|||||++++||+.++. ..+..|.|+|||+|||||+|+|||++ ...+.
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l~ 162 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-NTKLP 162 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-EEEEC
T ss_pred HHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-CcCce
Confidence 99999999999999999999999999999999999999999999984 45678999999999999999999984 45799
Q ss_pred eeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEE
Q 003179 151 IHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNL 230 (842)
Q Consensus 151 IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~L 230 (842)
+++++.+|++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|++..... .......|+|+|
T Consensus 163 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~~~skl~l 239 (350)
T 2vvg_A 163 LKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE---NKEVIRVGKLNL 239 (350)
T ss_dssp EEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC-------CEEEEEEEEE
T ss_pred eeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccC---CCccEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876542 234567899999
Q ss_pred eeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCc
Q 003179 231 VDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEE 310 (842)
Q Consensus 231 VDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~ 310 (842)
||||||||..++++.|.+++|+.+||+||++||+||.+|+++. .|||||||||||||||+|||||+|+|||||||+.
T Consensus 240 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~---~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~ 316 (350)
T 2vvg_A 240 VDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA---THIPYRDSKLTRLLQDSLGGNSKTLMCANISPAS 316 (350)
T ss_dssp EECCCCCC---------------CTTHHHHHHHHHHHHHHHTC---SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBG
T ss_pred EeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC---CCCCccccHHHHHHHHhcCCCccEEEEEEeCCcc
Confidence 9999999999999999999999999999999999999999863 6999999999999999999999999999999999
Q ss_pred CchHhHHHHHHHHHHhhcccccceeccccCH
Q 003179 311 DHIEETKGTLQFASRAKRITNCVQVNEILTD 341 (842)
Q Consensus 311 ~~~eETLsTLrFAsRAk~IkN~~~vNe~~~~ 341 (842)
.+++||++||+||+||++|+|+|++|+++.+
T Consensus 317 ~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 317 TNYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp GGHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred ccHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 9999999999999999999999999998654
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.5e-90 Score=759.39 Aligned_cols=335 Identities=35% Similarity=0.540 Sum_probs=255.5
Q ss_pred CceEEEEEeCCCCCCccCCC--ceEE-EcCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC
Q 003179 2 EKICVAVRVRPPVSLETSGG--VFWK-VEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFN 78 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~--~~~~-v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN 78 (842)
++|+|+|||||++..|...+ .++. +++..+.+..... ......|+||+||+++++|++||+.++.|+|+++++|||
T Consensus 21 ~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~-~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N 99 (388)
T 3bfn_A 21 ARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN-HQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQN 99 (388)
T ss_dssp CCCEEEEEECCCC------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCC
T ss_pred CCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCC-CCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCce
Confidence 68999999999999886432 2232 3444555443221 234578999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhc----cccceEEEEeeeeeeccccccccccccccceeeec
Q 003179 79 GTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMM----SNREFLVRVSYMEIYNEEINDLLAVENQKLQIHES 154 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~----~~~ef~V~VSylEIYNE~V~DLL~~~~~~L~IrEd 154 (842)
+||||||||||||||||+|+.+++|||||++++||+.++.. ....|.|+|||+|||||+|+|||++....+.|+++
T Consensus 100 ~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~ired 179 (388)
T 3bfn_A 100 ASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIRED 179 (388)
T ss_dssp EEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCCCEEC
T ss_pred eeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCceEEEc
Confidence 99999999999999999999999999999999999999753 34579999999999999999999998889999999
Q ss_pred CCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeecc
Q 003179 155 LEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLA 234 (842)
Q Consensus 155 ~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLA 234 (842)
+.++++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|++..... ......|+|+|||||
T Consensus 180 ~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~----~~~~~~skL~lVDLA 255 (388)
T 3bfn_A 180 CRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLA----PFRQREGKLYLIDLA 255 (388)
T ss_dssp TTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESST----TCCEEEEEEEEEECC
T ss_pred CCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCC----CCceeEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999876432 224578999999999
Q ss_pred CCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchH
Q 003179 235 GSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIE 314 (842)
Q Consensus 235 GSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~e 314 (842)
||||..++++.|.+++|+.+||+||++||+||.+|+++. .|||||||||||||||+|||||+|+|||||||+..+++
T Consensus 256 GSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~---~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ 332 (388)
T 3bfn_A 256 GSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL---PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYL 332 (388)
T ss_dssp CTTC--------------CCCCHHHHHHHHHHHHHHTTC---SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHH
T ss_pred CCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC---CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHH
Confidence 999999999999999999999999999999999999753 49999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccccceeccccCHHHH
Q 003179 315 ETKGTLQFASRAKRITNCVQVNEILTDAAL 344 (842)
Q Consensus 315 ETLsTLrFAsRAk~IkN~~~vNe~~~~~~l 344 (842)
||++||+||+||++|+|+|.+|+..+..++
T Consensus 333 ETlsTLrfA~rak~I~n~p~~n~~~~~~~l 362 (388)
T 3bfn_A 333 DTVSALNFAARSKEVINRPFTNESLQPHAL 362 (388)
T ss_dssp HHHHHHHHHCSEEEEC--------------
T ss_pred HHHHHHHHHHHHhhCcCcCcccCCCCHHHH
Confidence 999999999999999999999999877554
No 7
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=5.7e-89 Score=748.91 Aligned_cols=336 Identities=40% Similarity=0.616 Sum_probs=285.9
Q ss_pred CCceEEEEEeCCCCCCccC--CCceEEEcCCeEEEeecCCCCCCCcceeecEeeCCC--------CChHHHHHHHHHHHH
Q 003179 1 MEKICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEET--------CSNARVYELLTKDII 70 (842)
Q Consensus 1 mE~IrV~VRVRP~~~~E~~--~~~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~--------asQeeVYe~v~~pLV 70 (842)
|++|+|+|||||++..|.. ..+++.++++.+.+..+.......+.|+||+||+++ ++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 5799999999999988853 345678888888876554333456789999999987 899999999999999
Q ss_pred HHHhcCCCeeEEeeccCCCCccccccCCC--CCCChHHhHHHHHHHHHHhcc--ccceEEEEeeeeeecccccccccccc
Q 003179 71 HAAVEGFNGTVFAYGQTSSGKTFTMNGSA--DNPGVISLGVKDIFDAIQMMS--NREFLVRVSYMEIYNEEINDLLAVEN 146 (842)
Q Consensus 71 ~svL~GyN~TIfAYGQTGSGKTyTM~Gs~--~~~GIIPRal~dLF~~I~~~~--~~ef~V~VSylEIYNE~V~DLL~~~~ 146 (842)
+++++|||+||||||||||||||||+|+. +++|||||++++||+.|+... +..|.|+|||+|||||+|+|||++.+
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999999984 578999999999999998753 45899999999999999999999865
Q ss_pred -ccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEE
Q 003179 147 -QKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRV 225 (842)
Q Consensus 147 -~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~ 225 (842)
..+.+++++..|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++....... .......
T Consensus 163 ~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~-~~~~~~~ 241 (366)
T 2zfi_A 163 KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET-NITTEKV 241 (366)
T ss_dssp CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTT-TCEEEEE
T ss_pred CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCC-CccceeE
Confidence 57999999999999999999999999999999999999999999999999999999999999887654321 2234578
Q ss_pred EeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCC---------CCCCcccCCCCccccccccccCC
Q 003179 226 SVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGV---------KQRGHIPYRDSKLTRILQPALGG 296 (842)
Q Consensus 226 SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~---------kk~~hIPYRDSKLTrLLqDSLGG 296 (842)
|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+++. ++..|||||||||||||||+|||
T Consensus 242 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgG 321 (366)
T 2zfi_A 242 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321 (366)
T ss_dssp EEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSST
T ss_pred eEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999998742 24579999999999999999999
Q ss_pred CcceeeeecCCCCcCchHhHHHHHHHHHHhhcccccceecc
Q 003179 297 NAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNE 337 (842)
Q Consensus 297 NskT~mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~vNe 337 (842)
||+|+|||||||+..+++||++||+||+|||+|+|.|.++.
T Consensus 322 nskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp TCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 99999999999999999999999999999999999999874
No 8
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2.5e-88 Score=741.10 Aligned_cols=331 Identities=45% Similarity=0.674 Sum_probs=301.5
Q ss_pred CceEEEEEeCCCCCCccCC--CceEEEcCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCe
Q 003179 2 EKICVAVRVRPPVSLETSG--GVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNG 79 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~--~~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~ 79 (842)
++|+|+|||||++..|... ..++.+.++....... ....+.|.||+||+++++|++||+.++.|+|+++++|||+
T Consensus 6 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~---~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ 82 (355)
T 1goj_A 6 NSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDS---KEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNG 82 (355)
T ss_dssp CBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECS---TTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCE
T ss_pred CCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEcc---CCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcc
Confidence 6899999999999888543 3456665544332221 2345789999999999999999999999999999999999
Q ss_pred eEEeeccCCCCccccccCC----CCCCChHHhHHHHHHHHHHhc-cccceEEEEeeeeeeccccccccccccccceeeec
Q 003179 80 TVFAYGQTSSGKTFTMNGS----ADNPGVISLGVKDIFDAIQMM-SNREFLVRVSYMEIYNEEINDLLAVENQKLQIHES 154 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~Gs----~~~~GIIPRal~dLF~~I~~~-~~~ef~V~VSylEIYNE~V~DLL~~~~~~L~IrEd 154 (842)
||||||||||||||||+|+ ++++|||||++++||+.+... .+..|.|+|||+|||||+|+|||++....+.++++
T Consensus 83 tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~ 162 (355)
T 1goj_A 83 TVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEE 162 (355)
T ss_dssp EEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEE
T ss_pred eEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEc
Confidence 9999999999999999996 356899999999999999764 35689999999999999999999999889999999
Q ss_pred CCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeecc
Q 003179 155 LEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLA 234 (842)
Q Consensus 155 ~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLA 234 (842)
+.+|++|.|++++.|.|++|++++|..|..+|++++|.||..|||||+||+|+|.+.... ......|+|+|||||
T Consensus 163 ~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skL~lVDLA 237 (355)
T 1goj_A 163 KNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE-----TGSAKSGQLFLVDLA 237 (355)
T ss_dssp TTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETT-----TTEEEEEEEEEEECC
T ss_pred CCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccC-----CCceeeeEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999987653 235678999999999
Q ss_pred CCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchH
Q 003179 235 GSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIE 314 (842)
Q Consensus 235 GSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~e 314 (842)
||||..++++.|.+++|+.+||+||++||+||.+|+++. ..|||||||||||||||+|||||+|+|||||||+..+++
T Consensus 238 GSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~--~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ 315 (355)
T 1goj_A 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGK--SSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDA 315 (355)
T ss_dssp CCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCS--CSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHH
T ss_pred CCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCC--CCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHH
Confidence 999999999999999999999999999999999999853 469999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccccceeccccCHH
Q 003179 315 ETKGTLQFASRAKRITNCVQVNEILTDA 342 (842)
Q Consensus 315 ETLsTLrFAsRAk~IkN~~~vNe~~~~~ 342 (842)
||++||+||+|||+|+|+|++|+..+..
T Consensus 316 ETl~TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 316 ETLSTLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred HHHHHHHHHHHHhhccCCceeCCCCCHH
Confidence 9999999999999999999999987653
No 9
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3.4e-88 Score=758.35 Aligned_cols=337 Identities=38% Similarity=0.596 Sum_probs=276.9
Q ss_pred CceEEEEEeCCCCCCccCC--CceEEEcCC--eEEEeecCCC------------CCCCcceeecEeeCC-------CCCh
Q 003179 2 EKICVAVRVRPPVSLETSG--GVFWKVEDN--RVSLHRQHDT------------PVSGTSYAFDHVFEE-------TCSN 58 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~--~~~~~v~~~--~v~l~~~~~~------------~~~~~sF~FD~VF~~-------~asQ 58 (842)
++|+|+|||||+++.|... .+++.++.. .+.+..+... ....+.|+||+||++ .++|
T Consensus 38 ~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~asQ 117 (443)
T 2owm_A 38 ANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQ 117 (443)
T ss_dssp EECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCCCH
T ss_pred CCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCCCH
Confidence 5899999999999988533 345566543 3444332210 123578999999976 4899
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhc----cccceEEEEeeeeee
Q 003179 59 ARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMM----SNREFLVRVSYMEIY 134 (842)
Q Consensus 59 eeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~----~~~ef~V~VSylEIY 134 (842)
++||+.++.|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.|... .+..|.|+|||+|||
T Consensus 118 ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lEIY 197 (443)
T 2owm_A 118 EHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVY 197 (443)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEEEE
T ss_pred HHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999864 456899999999999
Q ss_pred cccccccccccc-----ccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEE
Q 003179 135 NEEINDLLAVEN-----QKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIE 209 (842)
Q Consensus 135 NE~V~DLL~~~~-----~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve 209 (842)
||+|+|||++.. ..+.|++++.+|++|.||+++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|+
T Consensus 198 nE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 277 (443)
T 2owm_A 198 NEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLK 277 (443)
T ss_dssp TTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEE
T ss_pred CCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEE
Confidence 999999998732 359999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCC---------------
Q 003179 210 SKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVK--------------- 274 (842)
Q Consensus 210 ~~~~~~~~~~~~~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~k--------------- 274 (842)
+...... ......+.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++..
T Consensus 278 ~~~~~~~-~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~ 356 (443)
T 2owm_A 278 QIHHDLE-TDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGR 356 (443)
T ss_dssp EEC--------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC------------------
T ss_pred EeecccC-CCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccccccccccccc
Confidence 8764322 123356789999999999999999999999999999999999999999999987542
Q ss_pred ----CCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhHHHHHHHHHHhhcccccceeccccCH
Q 003179 275 ----QRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTD 341 (842)
Q Consensus 275 ----k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~vNe~~~~ 341 (842)
...|||||||||||||||+|||||+|+|||||||+ +++||++||+||+|||+|+|+|++|++...
T Consensus 357 ~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~~ 425 (443)
T 2owm_A 357 TPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGV 425 (443)
T ss_dssp -------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC---
T ss_pred ccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCCc
Confidence 13499999999999999999999999999999997 599999999999999999999999995443
No 10
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.3e-88 Score=739.38 Aligned_cols=325 Identities=40% Similarity=0.674 Sum_probs=262.6
Q ss_pred CceEEEEEeCCCCCCccCCC--ceEEEcCCeEEEeecCCC------------------CCCCcceeecEeeCCCCChHHH
Q 003179 2 EKICVAVRVRPPVSLETSGG--VFWKVEDNRVSLHRQHDT------------------PVSGTSYAFDHVFEETCSNARV 61 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~--~~~~v~~~~v~l~~~~~~------------------~~~~~sF~FD~VF~~~asQeeV 61 (842)
++|+|+|||||++..|...+ .++.+.++.+.+.++... ......|.||+||+++++|++|
T Consensus 10 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~V 89 (355)
T 3lre_A 10 HHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEV 89 (355)
T ss_dssp --CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHHH
T ss_pred CCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHHH
Confidence 58999999999999885433 456776666655443211 1234579999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc-ccceEEEEeeeeeecccccc
Q 003179 62 YELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS-NREFLVRVSYMEIYNEEIND 140 (842)
Q Consensus 62 Ye~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~-~~ef~V~VSylEIYNE~V~D 140 (842)
|+.++.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++... ...|.|.|||+|||||+|+|
T Consensus 90 y~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i~D 169 (355)
T 3lre_A 90 FEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRD 169 (355)
T ss_dssp HHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999998753 55799999999999999999
Q ss_pred ccccccccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCC
Q 003179 141 LLAVENQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSST 220 (842)
Q Consensus 141 LL~~~~~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~ 220 (842)
||++. .++.+++++.+|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++...... ..
T Consensus 170 LL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~--~~ 246 (355)
T 3lre_A 170 LLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS--IN 246 (355)
T ss_dssp SSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSC--TT
T ss_pred CcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCC--CC
Confidence 99865 5799999999999999999999999999999999999999999999999999999999999998765432 23
Q ss_pred CceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcce
Q 003179 221 DAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKT 300 (842)
Q Consensus 221 ~~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT 300 (842)
..+..|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++.++..|||||||||||||||+|||||+|
T Consensus 247 ~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt 326 (355)
T 3lre_A 247 QNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQT 326 (355)
T ss_dssp CCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEE
T ss_pred CCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceE
Confidence 34567999999999999999999999999999999999999999999999876667899999999999999999999999
Q ss_pred eeeecCCCCcCchHhHHHHHHHHHHhhcc
Q 003179 301 SIICTIAPEEDHIEETKGTLQFASRAKRI 329 (842)
Q Consensus 301 ~mIatISPs~~~~eETLsTLrFAsRAk~I 329 (842)
+|||||||+..+++||++||+||+|||+|
T Consensus 327 ~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 327 IMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999987
No 11
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-87 Score=740.22 Aligned_cols=332 Identities=42% Similarity=0.671 Sum_probs=277.2
Q ss_pred CceEEEEEeCCCCCCccC--CCceEEEcCC-eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC
Q 003179 2 EKICVAVRVRPPVSLETS--GGVFWKVEDN-RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFN 78 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~--~~~~~~v~~~-~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN 78 (842)
++|+|+|||||++..|.. ...++.+.++ .+.+.... .....+.|+||+||+++++|++||+.++.|+|+++++|||
T Consensus 23 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n 101 (373)
T 2wbe_C 23 QNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTL-DSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYN 101 (373)
T ss_dssp EECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSS-SSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCC-CCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCce
Confidence 589999999999988843 2334555444 44443222 2234678999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCccccccCCCC-----------CCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccccccccc-
Q 003179 79 GTVFAYGQTSSGKTFTMNGSAD-----------NPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN- 146 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~Gs~~-----------~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~- 146 (842)
+||||||||||||||||+|+.. ++|||||++++||+.++.. +..|.|+|||+|||||+|+|||++..
T Consensus 102 ~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~ 180 (373)
T 2wbe_C 102 CTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLLSTDDT 180 (373)
T ss_dssp EEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESSCTTSC
T ss_pred EEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECCCCCCC
Confidence 9999999999999999999754 6799999999999999764 56899999999999999999998764
Q ss_pred ccceeeecC--CCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceE
Q 003179 147 QKLQIHESL--EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIR 224 (842)
Q Consensus 147 ~~L~IrEd~--~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~ 224 (842)
..+.+++++ .++++|.||+++.|.|++|++++|..|..+|++++|.||..|||||+||+|.|+...... ......+
T Consensus 181 ~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~~~ 258 (373)
T 2wbe_C 181 TKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI--EGEDMLK 258 (373)
T ss_dssp SCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT--TTCCEEE
T ss_pred CCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC--CCCccee
Confidence 567888874 567999999999999999999999999999999999999999999999999998765432 2234567
Q ss_pred EEeEEEeeccCCccccccCCC-chhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeee
Q 003179 225 VSVLNLVDLAGSERIAKTGAD-GVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSII 303 (842)
Q Consensus 225 ~SkL~LVDLAGSER~~ktga~-G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mI 303 (842)
.|+|+|||||||||..++++. |.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+||
T Consensus 259 ~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~---~~hvPyRdSkLT~lLqdsLgGnskt~mI 335 (373)
T 2wbe_C 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR---APHVPYRESKLTRLLQESLGGRTKTSII 335 (373)
T ss_dssp EEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHC---SSCCCGGGCHHHHHTHHHHHSSSEEEEE
T ss_pred EEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcC---CCcCccccchHHHHHHHHhCCCceEEEE
Confidence 899999999999999999987 999999999999999999999999975 3699999999999999999999999999
Q ss_pred ecCCCCcCchHhHHHHHHHHHHhhcccccceeccccC
Q 003179 304 CTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILT 340 (842)
Q Consensus 304 atISPs~~~~eETLsTLrFAsRAk~IkN~~~vNe~~~ 340 (842)
|||||+..+++||++||+||+|||+|+|+|++|+..+
T Consensus 336 a~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 336 ATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 9999999999999999999999999999999998754
No 12
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=4.8e-88 Score=739.91 Aligned_cols=330 Identities=41% Similarity=0.637 Sum_probs=275.9
Q ss_pred CceEEEEEeCCCCCCccCC--CceEEEcC--CeEEEeecC-CCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 2 EKICVAVRVRPPVSLETSG--GVFWKVED--NRVSLHRQH-DTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~--~~~~~v~~--~~v~l~~~~-~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
++|+|+|||||++..|... ..++.+++ ..+.+.... ......+.|+||+||+++++|++||+.++.|+|+++++|
T Consensus 8 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 87 (359)
T 1x88_A 8 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMG 87 (359)
T ss_dssp -CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHhCC
Confidence 6899999999999888543 23455543 355554311 111235789999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCccccccCCCC-----------CCChHHhHHHHHHHHHHhccccceEEEEeeeeeeccccccccccc
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSAD-----------NPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVE 145 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~-----------~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~ 145 (842)
||+||||||||||||||||+|+.. .+|||||++++||+.+.. .+..|.|+|||+|||||+|+|||++.
T Consensus 88 ~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL~~~ 166 (359)
T 1x88_A 88 YNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLLNPS 166 (359)
T ss_dssp CEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETTCTT
T ss_pred CceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehhccc
Confidence 999999999999999999999754 369999999999999875 46789999999999999999999976
Q ss_pred c---ccceeeecCC--CceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCC
Q 003179 146 N---QKLQIHESLE--HGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSST 220 (842)
Q Consensus 146 ~---~~L~IrEd~~--~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~ 220 (842)
. ..+.+++++. +|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|+......+ +.
T Consensus 167 ~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~--~~ 244 (359)
T 1x88_A 167 SDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 244 (359)
T ss_dssp SCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTT--SC
T ss_pred ccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCC--CC
Confidence 5 4689999874 789999999999999999999999999999999999999999999999999987654322 23
Q ss_pred CceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcce
Q 003179 221 DAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKT 300 (842)
Q Consensus 221 ~~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT 300 (842)
.....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|
T Consensus 245 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~---~~hvPyRdSkLT~lLqdsLgGnskt 321 (359)
T 1x88_A 245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER---TPHVPYRESKLTRILQDSLGGRTRT 321 (359)
T ss_dssp EEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTT---CSCCCGGGSHHHHHTGGGSSSSSEE
T ss_pred ceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcC---CCCCccccchHHHHHHHHhCCCCeE
Confidence 4567899999999999999999999999999999999999999999999974 4699999999999999999999999
Q ss_pred eeeecCCCCcCchHhHHHHHHHHHHhhcccccceecc
Q 003179 301 SIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNE 337 (842)
Q Consensus 301 ~mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~vNe 337 (842)
+|||||||+..+++||++||+||+|||+|+|+|++|+
T Consensus 322 ~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 322 SIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 9999999999999999999999999999999999996
No 13
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=8.9e-87 Score=726.23 Aligned_cols=321 Identities=42% Similarity=0.653 Sum_probs=266.9
Q ss_pred CceEEEEEeCCCCCCccC--CCceEEEcCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCe
Q 003179 2 EKICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNG 79 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~--~~~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~ 79 (842)
++|+|+|||||+++.|.. ...++.+.++...+.. ...+.|.||+||+++++|++||+.++.|+|+++++|||+
T Consensus 11 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ 85 (344)
T 4a14_A 11 APVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL-----GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNA 85 (344)
T ss_dssp CCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE-----TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred cceEEEEEecccchHHHhccCeeEEEEcCCCceEEe-----cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCe
Confidence 589999999999998853 2344555443322221 235789999999999999999999999999999999999
Q ss_pred eEEeeccCCCCccccccCC------CCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeeccccccccccc--ccccee
Q 003179 80 TVFAYGQTSSGKTFTMNGS------ADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVE--NQKLQI 151 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~Gs------~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~--~~~L~I 151 (842)
||||||||||||||||+|+ .+++|||||++++||+.++......|.|+|||+|||||+|+|||++. ...+.+
T Consensus 86 tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 165 (344)
T 4a14_A 86 TVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQL 165 (344)
T ss_dssp EEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGGGCEE
T ss_pred eEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhcccccccee
Confidence 9999999999999999997 46799999999999999998888899999999999999999999854 467999
Q ss_pred eecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCC---CCCCceEEEeE
Q 003179 152 HESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDS---SSTDAIRVSVL 228 (842)
Q Consensus 152 rEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~---~~~~~v~~SkL 228 (842)
++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++....... ........|+|
T Consensus 166 ~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl 245 (344)
T 4a14_A 166 REDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKF 245 (344)
T ss_dssp EECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEE
T ss_pred eeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeee
Confidence 999999999999999999999999999999999999999999999999999999999987643211 12345678999
Q ss_pred EEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCC
Q 003179 229 NLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAP 308 (842)
Q Consensus 229 ~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISP 308 (842)
+|||||||||..++++.|.|++|+.+||+||++||+||.+|+++.++..|||||||||||||||+|||||+|+|||||||
T Consensus 246 ~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP 325 (344)
T 4a14_A 246 HFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSP 325 (344)
T ss_dssp EEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECC
T ss_pred eEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCC
Confidence 99999999999999999999999999999999999999999987777789999999999999999999999999999999
Q ss_pred CcCchHhHHHHHHHHHHhh
Q 003179 309 EEDHIEETKGTLQFASRAK 327 (842)
Q Consensus 309 s~~~~eETLsTLrFAsRAk 327 (842)
+..+++||++||+||+|||
T Consensus 326 ~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 326 SSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp BGGGHHHHHHHHHHHHHTC
T ss_pred CccchhHHhhhhhhhhhcC
Confidence 9999999999999999996
No 14
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=4.9e-87 Score=723.42 Aligned_cols=312 Identities=46% Similarity=0.699 Sum_probs=286.3
Q ss_pred CceEEEEEeCCCCCCccCC--CceEEEc-CCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC
Q 003179 2 EKICVAVRVRPPVSLETSG--GVFWKVE-DNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFN 78 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~--~~~~~v~-~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN 78 (842)
++|+|+|||||+++.|... ..++.+. ++.+.+ .++.|.||+||+++++|++||+.+++|+|+++++|||
T Consensus 7 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~--------~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n 78 (325)
T 1bg2_A 7 CNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI--------ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYN 78 (325)
T ss_dssp CEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEE--------TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCC
T ss_pred CCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEE--------CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCe
Confidence 6899999999999988532 2334444 344433 2478999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCccccccCCCCC---CChHHhHHHHHHHHHHhc-cccceEEEEeeeeeeccccccccccccccceeeec
Q 003179 79 GTVFAYGQTSSGKTFTMNGSADN---PGVISLGVKDIFDAIQMM-SNREFLVRVSYMEIYNEEINDLLAVENQKLQIHES 154 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~Gs~~~---~GIIPRal~dLF~~I~~~-~~~ef~V~VSylEIYNE~V~DLL~~~~~~L~IrEd 154 (842)
+||||||||||||||||+|+..+ +|||||++++||+.+... .+..|.|+|||+|||||+|+|||++....+.++++
T Consensus 79 ~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~ 158 (325)
T 1bg2_A 79 GTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHED 158 (325)
T ss_dssp EEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEEC
T ss_pred EEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEEC
Confidence 99999999999999999997554 599999999999999764 46689999999999999999999998889999999
Q ss_pred CCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeecc
Q 003179 155 LEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLA 234 (842)
Q Consensus 155 ~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLA 234 (842)
+.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+.... ......|+|+|||||
T Consensus 159 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skl~lVDLA 233 (325)
T 1bg2_A 159 KNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ-----TEQKLSGKLYLVDLA 233 (325)
T ss_dssp TTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT-----TCCEEEEEEEEEECC
T ss_pred CCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecC-----CCcEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999987643 234578999999999
Q ss_pred CCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchH
Q 003179 235 GSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIE 314 (842)
Q Consensus 235 GSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~e 314 (842)
||||..++++.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+++
T Consensus 234 GSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~---~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ 310 (325)
T 1bg2_A 234 GSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG---STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNES 310 (325)
T ss_dssp CSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTT---CSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHH
T ss_pred CCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcC---CCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHH
Confidence 99999999999999999999999999999999999985 369999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcc
Q 003179 315 ETKGTLQFASRAKRI 329 (842)
Q Consensus 315 ETLsTLrFAsRAk~I 329 (842)
||++||+||+|||+|
T Consensus 311 ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 311 ETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999987
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=4.2e-86 Score=723.35 Aligned_cols=327 Identities=43% Similarity=0.654 Sum_probs=265.4
Q ss_pred CceEEEEEeCCCCCCccC--CCceEEEcCCeEEEeecCC------CCCCCcceeecEee--------CCCCChHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHD------TPVSGTSYAFDHVF--------EETCSNARVYELL 65 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~--~~~~~~v~~~~v~l~~~~~------~~~~~~sF~FD~VF--------~~~asQeeVYe~v 65 (842)
.+|+|+|||||++..|.. ..+++.++++.+.+..+.. .....+.|.||+|| ++.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 489999999999998853 3456788888877753221 11345789999999 4568999999999
Q ss_pred HHHHHHHHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhc--cccceEEEEeeeeeeccccccccc
Q 003179 66 TKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMM--SNREFLVRVSYMEIYNEEINDLLA 143 (842)
Q Consensus 66 ~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~--~~~ef~V~VSylEIYNE~V~DLL~ 143 (842)
+.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++.. .+..|.|+|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 999999999999999999999999999999999999999999999999999753 356799999999999999999999
Q ss_pred ccc--ccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCC
Q 003179 144 VEN--QKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTD 221 (842)
Q Consensus 144 ~~~--~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~ 221 (842)
+.+ ..+.+++++..|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|.+...+.. ....
T Consensus 161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~-~~~~ 239 (354)
T 3gbj_A 161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVK-SGTS 239 (354)
T ss_dssp ------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTT-SCEE
T ss_pred CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccC-CCCC
Confidence 764 5799999999999999999999999999999999999999999999999999999999999987654322 2234
Q ss_pred ceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCC---CCCCcccCCCCccccccccccCCCc
Q 003179 222 AIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGV---KQRGHIPYRDSKLTRILQPALGGNA 298 (842)
Q Consensus 222 ~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~---kk~~hIPYRDSKLTrLLqDSLGGNs 298 (842)
....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++.. .+..|||||||||||||||+|||||
T Consensus 240 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGns 319 (354)
T 3gbj_A 240 GEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS 319 (354)
T ss_dssp EEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTC
T ss_pred CeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCC
Confidence 5678999999999999999999999999999999999999999999998743 3457999999999999999999999
Q ss_pred ceeeeecCCCCcCchHhHHHHHHHHHHhhcc
Q 003179 299 KTSIICTIAPEEDHIEETKGTLQFASRAKRI 329 (842)
Q Consensus 299 kT~mIatISPs~~~~eETLsTLrFAsRAk~I 329 (842)
+|+|||||||+..+++||++||+||.||+.-
T Consensus 320 kt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 320 KTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred eEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999853
No 16
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=2.9e-85 Score=715.53 Aligned_cols=323 Identities=35% Similarity=0.555 Sum_probs=263.2
Q ss_pred CceEEEEEeCCCCCCccCCCceEEEc---C--C--eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHh
Q 003179 2 EKICVAVRVRPPVSLETSGGVFWKVE---D--N--RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAV 74 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~~~~~v~---~--~--~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL 74 (842)
++|+|+|||||+...|...+..+.+. + + .+.+....+ ....+.|.||+||+++++|++||+.+ .|+|++++
T Consensus 5 gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~l 82 (349)
T 3t0q_A 5 GNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEG-RILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSSL 82 (349)
T ss_dssp CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC---CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGGG
T ss_pred CCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCC-cccceeeecCEEECCCccHHHHHHHH-HHHHHHHH
Confidence 68999999999999987654433332 1 1 233433222 23356899999999999999999986 68999999
Q ss_pred cCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc--ccceEEEEeeeeeecccccccccccc------
Q 003179 75 EGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS--NREFLVRVSYMEIYNEEINDLLAVEN------ 146 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~--~~ef~V~VSylEIYNE~V~DLL~~~~------ 146 (842)
+|||+||||||||||||||||+|+ ++|||||++++||+.++... +..|.|+|||+|||||+|+|||++..
T Consensus 83 ~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 160 (349)
T 3t0q_A 83 DGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNID 160 (349)
T ss_dssp TTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------
T ss_pred CCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccccc
Confidence 999999999999999999999996 46999999999999998643 45899999999999999999998643
Q ss_pred -----ccceeeecCC-CceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCC
Q 003179 147 -----QKLQIHESLE-HGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSST 220 (842)
Q Consensus 147 -----~~L~IrEd~~-~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~ 220 (842)
..+.+++++. +|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.....
T Consensus 161 ~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----- 235 (349)
T 3t0q_A 161 EILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT----- 235 (349)
T ss_dssp ------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT-----
T ss_pred cccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC-----
Confidence 4677777654 57999999999999999999999999999999999999999999999999999876542
Q ss_pred CceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcce
Q 003179 221 DAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKT 300 (842)
Q Consensus 221 ~~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT 300 (842)
+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++..+..|||||||||||||||+|||||+|
T Consensus 236 ~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt 315 (349)
T 3t0q_A 236 GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKT 315 (349)
T ss_dssp CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEE
T ss_pred CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceE
Confidence 34568999999999999999999999999999999999999999999999876555799999999999999999999999
Q ss_pred eeeecCCCCcCchHhHHHHHHHHHHhhcccccc
Q 003179 301 SIICTIAPEEDHIEETKGTLQFASRAKRITNCV 333 (842)
Q Consensus 301 ~mIatISPs~~~~eETLsTLrFAsRAk~IkN~~ 333 (842)
+|||||||+..+++||++||+||+|++.|+..+
T Consensus 316 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 316 LMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999997643
No 17
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.7e-85 Score=715.28 Aligned_cols=324 Identities=34% Similarity=0.546 Sum_probs=269.0
Q ss_pred CceEEEEEeCCCCC-CccCCCceEEEcC-----C--eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVS-LETSGGVFWKVED-----N--RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAA 73 (842)
Q Consensus 2 E~IrV~VRVRP~~~-~E~~~~~~~~v~~-----~--~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~sv 73 (842)
++|+|+|||||+.. .|......+.+.. + .+.+....+ ....+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 3 ~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN-TAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGG-TTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCC-CcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 68999999999987 4544444444421 1 344443322 23457899999999999999999986 5999999
Q ss_pred hcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc--ccceEEEEeeeeeeccccccccccccc----
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS--NREFLVRVSYMEIYNEEINDLLAVENQ---- 147 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~--~~ef~V~VSylEIYNE~V~DLL~~~~~---- 147 (842)
++|||+||||||||||||||||+|+ ++|||||++++||+.++... ...|.|+|||+|||||+|+|||++...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 158 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred cCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence 9999999999999999999999995 57999999999999998643 468999999999999999999987643
Q ss_pred -----cceeeecC-CCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCC
Q 003179 148 -----KLQIHESL-EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTD 221 (842)
Q Consensus 148 -----~L~IrEd~-~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~ 221 (842)
.+.+++++ .++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+.... .+
T Consensus 159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~ 233 (347)
T 1f9v_A 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK-----TG 233 (347)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC-------C
T ss_pred cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCC-----CC
Confidence 46787764 57899999999999999999999999999999999999999999999999999887643 23
Q ss_pred ceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCccee
Q 003179 222 AIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTS 301 (842)
Q Consensus 222 ~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~ 301 (842)
....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++..+..|||||||||||||||+|||||+|+
T Consensus 234 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~ 313 (347)
T 1f9v_A 234 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 313 (347)
T ss_dssp CEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEE
T ss_pred ceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEE
Confidence 45789999999999999999999999999999999999999999999998765557999999999999999999999999
Q ss_pred eeecCCCCcCchHhHHHHHHHHHHhhcccccce
Q 003179 302 IICTIAPEEDHIEETKGTLQFASRAKRITNCVQ 334 (842)
Q Consensus 302 mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~ 334 (842)
|||||||+..+++||++||+||+||++|+..++
T Consensus 314 mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 314 MFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999999998764
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-85 Score=711.34 Aligned_cols=317 Identities=38% Similarity=0.607 Sum_probs=273.8
Q ss_pred CceEEEEEeCCCCCCccCCC---ceEEE--cCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 2 EKICVAVRVRPPVSLETSGG---VFWKV--EDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~---~~~~v--~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
++|+|+|||||++..|...+ .++.+ .++.+...... ...+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 4 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G 79 (330)
T 2h58_A 4 GNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK---GKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDG 79 (330)
T ss_dssp -CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET---TEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTT
T ss_pred CCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC---CCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCC
Confidence 68999999999998885432 23444 33333322211 2357899999999999999999985 8999999999
Q ss_pred CCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhc-cccceEEEEeeeeeecccccccccccc-ccc--eee
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMM-SNREFLVRVSYMEIYNEEINDLLAVEN-QKL--QIH 152 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~-~~~ef~V~VSylEIYNE~V~DLL~~~~-~~L--~Ir 152 (842)
||+||||||||||||||||+|+.+++|||||++++||+.++.. .+..|.|+|||+|||||+|+|||++.+ ..+ .++
T Consensus 80 ~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~ 159 (330)
T 2h58_A 80 FNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLC 159 (330)
T ss_dssp CCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEEC
T ss_pred CEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEe
Confidence 9999999999999999999999999999999999999999864 456899999999999999999998754 334 445
Q ss_pred ecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEee
Q 003179 153 ESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVD 232 (842)
Q Consensus 153 Ed~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVD 232 (842)
+++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|++.... ......|+|+|||
T Consensus 160 ~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skL~lVD 234 (330)
T 2h58_A 160 PDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS-----TGLRTTGKLNLVD 234 (330)
T ss_dssp TTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT-----TTEEEEEEEEEEE
T ss_pred ecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC-----CCcEEEEEEEEEe
Confidence 68889999999999999999999999999999999999999999999999999999887643 3356789999999
Q ss_pred ccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCc
Q 003179 233 LAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDH 312 (842)
Q Consensus 233 LAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~ 312 (842)
||||||..++++.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+
T Consensus 235 LAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~---~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~ 311 (330)
T 2h58_A 235 LAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR---QGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKN 311 (330)
T ss_dssp CCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTT---CSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGG
T ss_pred CCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcC---CCCCcccccHHHHHHHHHhCCCceEEEEEEeCCcccc
Confidence 9999999999999999999999999999999999999874 4699999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhccc
Q 003179 313 IEETKGTLQFASRAKRIT 330 (842)
Q Consensus 313 ~eETLsTLrFAsRAk~Ik 330 (842)
++||++||+||+|||+|+
T Consensus 312 ~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 312 TSETLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhhCc
Confidence 999999999999999986
No 19
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-85 Score=716.80 Aligned_cols=318 Identities=38% Similarity=0.627 Sum_probs=260.1
Q ss_pred CceEEEEEeCCCCCCccCCCceEEE--cCCeEEEeecCCC-------CCCCcceeecEeeCCCCChHHHHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETSGGVFWKV--EDNRVSLHRQHDT-------PVSGTSYAFDHVFEETCSNARVYELLTKDIIHA 72 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~~~~~v--~~~~v~l~~~~~~-------~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~s 72 (842)
++|+|+|||||+...|.. .+.+ +...+.+..+... ....++|.||+||+ +++|++||+.+++|+|++
T Consensus 24 ~~i~V~vRvRP~~~~e~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~ 99 (359)
T 3nwn_A 24 KKVHAFVRVKPTDDFAHE---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQ 99 (359)
T ss_dssp CCEEEEEEECCCSSCCTT---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHH
T ss_pred CCEEEEEEcCCCCccccc---ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHH
Confidence 589999999999876643 2333 2334545433221 12346799999997 589999999999999999
Q ss_pred HhcCCCeeEEeeccCCCCccccccCCCC---CCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccccccccc---
Q 003179 73 AVEGFNGTVFAYGQTSSGKTFTMNGSAD---NPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN--- 146 (842)
Q Consensus 73 vL~GyN~TIfAYGQTGSGKTyTM~Gs~~---~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~--- 146 (842)
+++|||+||||||||||||||||+|+.. ++|||||++++||+.++...+..|.|+|||+|||||+|+|||++..
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 179 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVG 179 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSSTTSC
T ss_pred HhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccccccccc
Confidence 9999999999999999999999999754 4799999999999999998899999999999999999999998532
Q ss_pred ---ccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCce
Q 003179 147 ---QKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAI 223 (842)
Q Consensus 147 ---~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v 223 (842)
..+.+++++ .|++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|........ ....
T Consensus 180 ~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~---~~~~ 255 (359)
T 3nwn_A 180 PSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS---EEKY 255 (359)
T ss_dssp TTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC----------CC
T ss_pred cccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccccc---Cccc
Confidence 456777775 689999999999999999999999999999999999999999999999999987765432 3456
Q ss_pred EEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeee
Q 003179 224 RVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSII 303 (842)
Q Consensus 224 ~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mI 303 (842)
..|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++ +..|||||||||||||||+|||||+|+||
T Consensus 256 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~--~~~hVPYRdSkLT~lLqdsLgGnskt~mI 333 (359)
T 3nwn_A 256 ITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ--KRDHIPFRQCKLTHALKDSLGGNCNMVLV 333 (359)
T ss_dssp EEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-------CCGGGSHHHHHTHHHHSSSSEEEEE
T ss_pred ccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhc--CCCcCCcccCHHHHHHHHhcCCCccEEEE
Confidence 7899999999999999999999999999999999999999999999875 34699999999999999999999999999
Q ss_pred ecCCCCcCchHhHHHHHHHHHHhhcc
Q 003179 304 CTIAPEEDHIEETKGTLQFASRAKRI 329 (842)
Q Consensus 304 atISPs~~~~eETLsTLrFAsRAk~I 329 (842)
|||||+..+++||++||+||+|||+|
T Consensus 334 ~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 334 TNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999987
No 20
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=7.3e-85 Score=714.40 Aligned_cols=318 Identities=38% Similarity=0.626 Sum_probs=263.1
Q ss_pred CceEEEEEeCCCCCCccCCCceEEE--cCCeEEEeecCCC-------CCCCcceeecEeeCCCCChHHHHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETSGGVFWKV--EDNRVSLHRQHDT-------PVSGTSYAFDHVFEETCSNARVYELLTKDIIHA 72 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~~~~~v--~~~~v~l~~~~~~-------~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~s 72 (842)
++|+|+|||||+...+. ..+.+ ++..+.++.+... ......|.||+||+ +++|++||+.++.|+|++
T Consensus 23 g~IrV~vRvRP~~~~~~---~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~lv~~ 98 (358)
T 2nr8_A 23 KKVHAFVRVKPTDDFAH---EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQ 98 (358)
T ss_dssp CCEEEEEEECCCSSCCT---TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHH
T ss_pred CCeEEEEEcCCCCCCcc---ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHHHHHH
Confidence 68999999999876542 22333 4455666543221 12346799999995 789999999999999999
Q ss_pred HhcCCCeeEEeeccCCCCccccccCCCCC---CChHHhHHHHHHHHHHhccccceEEEEeeeeeeccccccccccc----
Q 003179 73 AVEGFNGTVFAYGQTSSGKTFTMNGSADN---PGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVE---- 145 (842)
Q Consensus 73 vL~GyN~TIfAYGQTGSGKTyTM~Gs~~~---~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~---- 145 (842)
+++|||+||||||||||||||||+|+.++ +|||||++++||+.++...+..|.|+|||+|||||+|+|||++.
T Consensus 99 ~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 178 (358)
T 2nr8_A 99 ALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVG 178 (358)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSSTTSC
T ss_pred HhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcCCccccC
Confidence 99999999999999999999999998764 89999999999999999888899999999999999999999863
Q ss_pred --cccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCce
Q 003179 146 --NQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAI 223 (842)
Q Consensus 146 --~~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v 223 (842)
..++.+++++ .|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++...... ....
T Consensus 179 ~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~---~~~~ 254 (358)
T 2nr8_A 179 PSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS---EEKY 254 (358)
T ss_dssp TTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC----------CC
T ss_pred ccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCC---CCCE
Confidence 3578999998 789999999999999999999999999999999999999999999999999998765422 3345
Q ss_pred EEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeee
Q 003179 224 RVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSII 303 (842)
Q Consensus 224 ~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mI 303 (842)
..|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+++ +..||||||||||+||||+|||||+|+||
T Consensus 255 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~--~~~hiPyRdSkLT~LLqdsLgGnskt~mI 332 (358)
T 2nr8_A 255 ITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ--KRDHIPFRQCKLTHALKDSLGGNCNMVLV 332 (358)
T ss_dssp EEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-------CCGGGSHHHHHTHHHHSSSSEEEEE
T ss_pred EEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhC--CCCcCCCccCHHHHHHHHhcCCCCeEEEE
Confidence 6899999999999999999999999999999999999999999999875 34699999999999999999999999999
Q ss_pred ecCCCCcCchHhHHHHHHHHHHhhcc
Q 003179 304 CTIAPEEDHIEETKGTLQFASRAKRI 329 (842)
Q Consensus 304 atISPs~~~~eETLsTLrFAsRAk~I 329 (842)
|||||+..+++||++||+||+|||.|
T Consensus 333 a~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 333 TNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986
No 21
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.7e-84 Score=713.81 Aligned_cols=319 Identities=36% Similarity=0.548 Sum_probs=250.7
Q ss_pred CceEEEEEeCCCCCCccCCCc--e-EE-------EcCCeEEEeecCC---------CCCCCcceeecEeeCCCCChHHHH
Q 003179 2 EKICVAVRVRPPVSLETSGGV--F-WK-------VEDNRVSLHRQHD---------TPVSGTSYAFDHVFEETCSNARVY 62 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~~--~-~~-------v~~~~v~l~~~~~---------~~~~~~sF~FD~VF~~~asQeeVY 62 (842)
++|+|+|||||+++.|...+. + +. .++..+.+..+.. .+...+.|+||+||+++++|++||
T Consensus 22 ~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy 101 (376)
T 2rep_A 22 GNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDEVF 101 (376)
T ss_dssp -CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHHHH
T ss_pred CCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchhhh
Confidence 689999999999999865432 1 11 1233444432111 112346899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeeEEeeccCCCCccccccCCCC----CCChHHhHHHHHHHHHHhcc--ccceEEEEeeeeeecc
Q 003179 63 ELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSAD----NPGVISLGVKDIFDAIQMMS--NREFLVRVSYMEIYNE 136 (842)
Q Consensus 63 e~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~----~~GIIPRal~dLF~~I~~~~--~~ef~V~VSylEIYNE 136 (842)
+.+ .|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.++... +..|.|+|||+|||||
T Consensus 102 ~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE 180 (376)
T 2rep_A 102 EEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNE 180 (376)
T ss_dssp HHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEETT
T ss_pred hhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEECC
Confidence 986 5899999999999999999999999999999754 68999999999999998643 4689999999999999
Q ss_pred ccccccccc-----cccceeeec--CCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEE
Q 003179 137 EINDLLAVE-----NQKLQIHES--LEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIE 209 (842)
Q Consensus 137 ~V~DLL~~~-----~~~L~IrEd--~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve 209 (842)
+|+|||++. ...+.++++ +.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|+
T Consensus 181 ~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~ 260 (376)
T 2rep_A 181 TVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQIS 260 (376)
T ss_dssp EEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEEEE
T ss_pred EeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEE
Confidence 999999875 246788888 5789999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCceEEEeEEEeeccCCccccccCCCc----hhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCc
Q 003179 210 SKGKDNDSSSTDAIRVSVLNLVDLAGSERIAKTGADG----VRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSK 285 (842)
Q Consensus 210 ~~~~~~~~~~~~~v~~SkL~LVDLAGSER~~ktga~G----~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSK 285 (842)
+.... ......|+|+|||||||||..++++.| .|++|+.+||+||++||+||.+|+++ ..||||||||
T Consensus 261 ~~~~~-----~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~---~~hVPYRdSk 332 (376)
T 2rep_A 261 GEHSS-----RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK---ESHVPYRNSK 332 (376)
T ss_dssp EEESS-----SCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTT---CSCCCGGGSH
T ss_pred EEecC-----CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC---CCccCCcCCH
Confidence 87643 234568999999999999999999999 99999999999999999999999974 4699999999
Q ss_pred cccccccccCCCcceeeeecCCCCcCchHhHHHHHHHHHHhhcc
Q 003179 286 LTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRI 329 (842)
Q Consensus 286 LTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFAsRAk~I 329 (842)
|||||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 333 LT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 333 LTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999864
No 22
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=2.1e-84 Score=711.21 Aligned_cols=323 Identities=32% Similarity=0.472 Sum_probs=271.1
Q ss_pred ceEEEEEeCCCCCCccCC--CceEEEc-CCeEEEeecCCC-----CCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHh
Q 003179 3 KICVAVRVRPPVSLETSG--GVFWKVE-DNRVSLHRQHDT-----PVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAV 74 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~~~--~~~~~v~-~~~v~l~~~~~~-----~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL 74 (842)
+|+|+|||||++..|... ..++.+. +..+.+..+... ....+.|.||+||+++++|++||+.++.|+|.+++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 699999999999988533 3345554 445555433211 01246899999999999999999999999999999
Q ss_pred c-CCCeeEEeeccCCCCccccccCCC-----CCCChHHhHHHHHHHHHHhc-cccceEEEEeeeeeeccccccccccccc
Q 003179 75 E-GFNGTVFAYGQTSSGKTFTMNGSA-----DNPGVISLGVKDIFDAIQMM-SNREFLVRVSYMEIYNEEINDLLAVENQ 147 (842)
Q Consensus 75 ~-GyN~TIfAYGQTGSGKTyTM~Gs~-----~~~GIIPRal~dLF~~I~~~-~~~ef~V~VSylEIYNE~V~DLL~~~~~ 147 (842)
+ |||+||||||||||||||||+|+. +++|||||++++||..++.. .+..|.|+|||+|||||+|+|||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 5 999999999999999999999974 67899999999999999864 456899999999999999999998654
Q ss_pred cceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEe
Q 003179 148 KLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSV 227 (842)
Q Consensus 148 ~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~Sk 227 (842)
.+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.+... ....|+
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~--------~~~~sk 231 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK--------NTSLGK 231 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT--------TEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC--------CcceeE
Confidence 577889999999999999999999999999999999999999999999999999999999986432 346799
Q ss_pred EEEeeccCCccccccCCCc-hhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecC
Q 003179 228 LNLVDLAGSERIAKTGADG-VRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTI 306 (842)
Q Consensus 228 L~LVDLAGSER~~ktga~G-~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatI 306 (842)
|+|||||||||..++++.| .+++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+|||||+|+|||||
T Consensus 232 L~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~---~~hvPyRdSkLT~lLqdsLgGnskt~mIa~i 308 (360)
T 1ry6_A 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD---KNHIPFRDSELTKVLRDIFVGKSKSIMIANI 308 (360)
T ss_dssp EEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTS---TTSCCGGGCHHHHHTGGGGSSSCEEEEEEEE
T ss_pred EEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcC---CCCCccccCHHHHHHHHHhCCCCeEEEEEEe
Confidence 9999999999999998876 57899999999999999999999864 4699999999999999999999999999999
Q ss_pred CCCcCchHhHHHHHHHHHHhhcccccceecc
Q 003179 307 APEEDHIEETKGTLQFASRAKRITNCVQVNE 337 (842)
Q Consensus 307 SPs~~~~eETLsTLrFAsRAk~IkN~~~vNe 337 (842)
||+..+++||++||+||+|||+|+|.|..|.
T Consensus 309 sP~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 309 SPTISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp CCBGGGHHHHHHHHHHHHHHCC---------
T ss_pred CCCcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 9999999999999999999999999555443
No 23
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-83 Score=713.25 Aligned_cols=324 Identities=35% Similarity=0.550 Sum_probs=273.2
Q ss_pred CceEEEEEeCCCCCC-ccCCCceEEEc---CC----eEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSL-ETSGGVFWKVE---DN----RVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAA 73 (842)
Q Consensus 2 E~IrV~VRVRP~~~~-E~~~~~~~~v~---~~----~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~sv 73 (842)
++|+|+|||||+.+. |......+.+. ++ .+.+.... .....+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 59 gnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~~~ 136 (403)
T 4etp_A 59 GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ-NTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 136 (403)
T ss_dssp CSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECS-SSCEEEEEEESEEECTTCCHHHHHHHH-HHHHHHH
T ss_pred CCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCC-CCcCceEEEcCEEECCCCchHHHHHHH-HHHHHHH
Confidence 689999999999877 43333333332 11 23332222 123457899999999999999999986 5899999
Q ss_pred hcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhc--cccceEEEEeeeeeecccccccccccc-----
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMM--SNREFLVRVSYMEIYNEEINDLLAVEN----- 146 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~--~~~ef~V~VSylEIYNE~V~DLL~~~~----- 146 (842)
++|||+||||||||||||||||+|+ ++|||||++++||+.++.. .+..|.|+|||+|||||+|+|||++..
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 214 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKED 214 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC-------
T ss_pred hCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccccc
Confidence 9999999999999999999999996 4699999999999999864 346899999999999999999998753
Q ss_pred ----ccceeeecC-CCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCC
Q 003179 147 ----QKLQIHESL-EHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTD 221 (842)
Q Consensus 147 ----~~L~IrEd~-~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~ 221 (842)
..+.+++++ .++++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+..... +
T Consensus 215 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-----~ 289 (403)
T 4etp_A 215 TSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT-----G 289 (403)
T ss_dssp -CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT-----C
T ss_pred cccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC-----C
Confidence 356677765 467999999999999999999999999999999999999999999999999998876432 3
Q ss_pred ceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCccee
Q 003179 222 AIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTS 301 (842)
Q Consensus 222 ~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~ 301 (842)
....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++.....||||||||||+||||+|||||+|+
T Consensus 290 ~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~ 369 (403)
T 4etp_A 290 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 369 (403)
T ss_dssp CEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEE
T ss_pred CeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEE
Confidence 45689999999999999999999999999999999999999999999998765567999999999999999999999999
Q ss_pred eeecCCCCcCchHhHHHHHHHHHHhhcccccce
Q 003179 302 IICTIAPEEDHIEETKGTLQFASRAKRITNCVQ 334 (842)
Q Consensus 302 mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~ 334 (842)
|||||||+..+++||++||+||+|++.|+..|.
T Consensus 370 mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 370 MFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999999999999987764
No 24
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.1e-83 Score=710.47 Aligned_cols=317 Identities=38% Similarity=0.576 Sum_probs=256.0
Q ss_pred CceEEEEEeCCCCCCccCCC--ceEEEc-CCeEEEeecCCCC-----CCCcceeecEeeCCCCChHHHHHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETSGG--VFWKVE-DNRVSLHRQHDTP-----VSGTSYAFDHVFEETCSNARVYELLTKDIIHAA 73 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~--~~~~v~-~~~v~l~~~~~~~-----~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~sv 73 (842)
++|+|+|||||++..|...+ .++.+. ++.+.++.+.... ...+.|+||+||+++++|++||+.++.|+|+++
T Consensus 51 ~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~ 130 (387)
T 2heh_A 51 HRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTI 130 (387)
T ss_dssp CSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHH
T ss_pred CCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHHHH
Confidence 68999999999999885433 345554 4455554332111 124689999999999999999999999999999
Q ss_pred hcCCCeeEEeeccCCCCccccccCC------CCCCChHHhHHHHHHHHHHhc--cccceEEEEeeeeeeccccccccccc
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTMNGS------ADNPGVISLGVKDIFDAIQMM--SNREFLVRVSYMEIYNEEINDLLAVE 145 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM~Gs------~~~~GIIPRal~dLF~~I~~~--~~~ef~V~VSylEIYNE~V~DLL~~~ 145 (842)
++|||+||||||||||||||||+|+ ..++|||||++++||..++.. .+..|.|+|||+|||||+|+|||++.
T Consensus 131 l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~ 210 (387)
T 2heh_A 131 FEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKK 210 (387)
T ss_dssp HTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTTT
T ss_pred hcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCCC
Confidence 9999999999999999999999996 346899999999999999754 35689999999999999999999875
Q ss_pred cccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEE
Q 003179 146 NQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRV 225 (842)
Q Consensus 146 ~~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~ 225 (842)
..+.+++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++.. ...
T Consensus 211 -~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~----------~~~ 279 (387)
T 2heh_A 211 -AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG----------RMH 279 (387)
T ss_dssp -EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS----------SEE
T ss_pred -ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC----------eee
Confidence 469999999999999999999999999999999999999999999999999999999999997542 257
Q ss_pred EeEEEeeccCCccccccC-CCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccc-cCCCcceeee
Q 003179 226 SVLNLVDLAGSERIAKTG-ADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPA-LGGNAKTSII 303 (842)
Q Consensus 226 SkL~LVDLAGSER~~ktg-a~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDS-LGGNskT~mI 303 (842)
|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+ |||||+|+||
T Consensus 280 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~---~~hvPYRdSKLTrlLqdsllGgnskT~mI 356 (387)
T 2heh_A 280 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN---KAHTPFRESKLTQVLRDSFIGENSRTCMI 356 (387)
T ss_dssp EEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT---CSCCCGGGSHHHHHTGGGGSSTTEEEEEE
T ss_pred eEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC---CCCCCccccHHHHHHhhhccCCCCeEEEE
Confidence 999999999999998886 56788999999999999999999999864 469999999999999999 5999999999
Q ss_pred ecCCCCcCchHhHHHHHHHHHHhhccccc
Q 003179 304 CTIAPEEDHIEETKGTLQFASRAKRITNC 332 (842)
Q Consensus 304 atISPs~~~~eETLsTLrFAsRAk~IkN~ 332 (842)
|||||+..+++||++||+||+|||+|++.
T Consensus 357 a~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 357 ATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred EEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999999864
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=2.1e-83 Score=713.95 Aligned_cols=326 Identities=35% Similarity=0.599 Sum_probs=268.0
Q ss_pred CceEEEEEeCCCCCCccCCCc-eEEE-cCCeEEEeecCCC---CCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 2 EKICVAVRVRPPVSLETSGGV-FWKV-EDNRVSLHRQHDT---PVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~~-~~~v-~~~~v~l~~~~~~---~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
++|+|+|||||+.+.|...+. .|.. ++..+.+...... ....+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 59 gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~plv~~~l~G 137 (412)
T 3u06_A 59 DNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMV-SPLIQSALDG 137 (412)
T ss_dssp CSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTTT-HHHHHHHHTT
T ss_pred CCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHHH-HHHHHHHHCC
Confidence 789999999999988865443 4444 4555555433221 12357899999999999999999864 6999999999
Q ss_pred CCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc--ccceEEEEeeeeeeccccccccccccccceee--
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS--NREFLVRVSYMEIYNEEINDLLAVENQKLQIH-- 152 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~--~~ef~V~VSylEIYNE~V~DLL~~~~~~L~Ir-- 152 (842)
||+||||||||||||||||+|.++++|||||++++||+.|.... +..|.|+|||+|||||+|+|||++....+.++
T Consensus 138 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~~~ 217 (412)
T 3u06_A 138 YNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMA 217 (412)
T ss_dssp CCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEEEC
T ss_pred CceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceeeee
Confidence 99999999999999999999999999999999999999998643 56899999999999999999998877665554
Q ss_pred ecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEee
Q 003179 153 ESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVD 232 (842)
Q Consensus 153 Ed~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVD 232 (842)
+++.++++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+.... ......|+|+|||
T Consensus 218 ~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~~kL~lVD 292 (412)
T 3u06_A 218 KNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE-----KQEISVGSINLVD 292 (412)
T ss_dssp SSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETT-----TTEEEEEEEEEEE
T ss_pred ecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCC-----CCCEEEEEEEEEE
Confidence 67788999999999999999999999999999999999999999999999999999887643 3356789999999
Q ss_pred ccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCc
Q 003179 233 LAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDH 312 (842)
Q Consensus 233 LAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~ 312 (842)
||||||.. .|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+
T Consensus 293 LAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~---~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~ 365 (412)
T 3u06_A 293 LAGSESPK----TSTRMTETKNINRSLSELTNVILALLQK---QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDC 365 (412)
T ss_dssp CCCCCC--------------CTTTHHHHHHHHHHHHHHTT---CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGG
T ss_pred CCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhcc---CCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhh
Confidence 99999974 4689999999999999999999999974 4699999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcccc-cceeccccC
Q 003179 313 IEETKGTLQFASRAKRITN-CVQVNEILT 340 (842)
Q Consensus 313 ~eETLsTLrFAsRAk~IkN-~~~vNe~~~ 340 (842)
++||++||+||+|++.|+. .+..|.+..
T Consensus 366 ~~ETl~TLrfA~rv~~i~~~~~~~n~~~~ 394 (412)
T 3u06_A 366 FQESVKSLRFAASVNSCKMTKAKRNRYLN 394 (412)
T ss_dssp HHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHHhhcccccccccccCC
Confidence 9999999999999999984 455565543
No 26
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=2.6e-83 Score=711.82 Aligned_cols=319 Identities=37% Similarity=0.564 Sum_probs=260.0
Q ss_pred CceEEEEEeCCCCCCccCCC--ceEEEcC-CeEEEeecCCCC-----CCCcceeecEeeCCCCChHHHHHHHHHHHHHHH
Q 003179 2 EKICVAVRVRPPVSLETSGG--VFWKVED-NRVSLHRQHDTP-----VSGTSYAFDHVFEETCSNARVYELLTKDIIHAA 73 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~--~~~~v~~-~~v~l~~~~~~~-----~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~sv 73 (842)
++|+|+|||||++..|...+ .++.+.+ +.+.++.+.... ...+.|+||+||+++++|++||+.++.|+|+++
T Consensus 71 ~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~ 150 (410)
T 1v8k_A 71 HRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTI 150 (410)
T ss_dssp CCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHH
T ss_pred CCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHHH
Confidence 68999999999999885433 3455544 455554332111 124689999999999999999999999999999
Q ss_pred hcCCCeeEEeeccCCCCccccccCCC------CCCChHHhHHHHHHHHHHhc--cccceEEEEeeeeeeccccccccccc
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTMNGSA------DNPGVISLGVKDIFDAIQMM--SNREFLVRVSYMEIYNEEINDLLAVE 145 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM~Gs~------~~~GIIPRal~dLF~~I~~~--~~~ef~V~VSylEIYNE~V~DLL~~~ 145 (842)
++|||+||||||||||||||||+|+. .++|||||++++||..+... .+..|.|+|||+|||||+|+|||++.
T Consensus 151 l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~ 230 (410)
T 1v8k_A 151 FEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK 230 (410)
T ss_dssp HTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTTT
T ss_pred hcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCCC
Confidence 99999999999999999999999963 46899999999999999753 35689999999999999999999875
Q ss_pred cccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEE
Q 003179 146 NQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRV 225 (842)
Q Consensus 146 ~~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~ 225 (842)
..+.+++++.++++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|++.. ...
T Consensus 231 -~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~----------~~~ 299 (410)
T 1v8k_A 231 -AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG----------RLH 299 (410)
T ss_dssp -EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS----------SEE
T ss_pred -CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC----------cce
Confidence 479999999999999999999999999999999999999999999999999999999999997642 257
Q ss_pred EeEEEeeccCCccccccC-CCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccc-cCCCcceeee
Q 003179 226 SVLNLVDLAGSERIAKTG-ADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPA-LGGNAKTSII 303 (842)
Q Consensus 226 SkL~LVDLAGSER~~ktg-a~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDS-LGGNskT~mI 303 (842)
|+|+|||||||||..+++ +.|.+++|+++||+||++||+||.+|+.+ ..||||||||||+||||+ |||||+|+||
T Consensus 300 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~---~~hIPYRdSKLTrLLqdsllGgnskT~mI 376 (410)
T 1v8k_A 300 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN---KAHTPFRESKLTQVLRDSFIGENSRTCMI 376 (410)
T ss_dssp EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC---------CCCCHHHHHTTHHHHSSSEEEEEE
T ss_pred eEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC---CCCCCcccchhHHHHhhcccCCCceEEEE
Confidence 999999999999998886 56788999999999999999999999864 469999999999999999 6999999999
Q ss_pred ecCCCCcCchHhHHHHHHHHHHhhcccccce
Q 003179 304 CTIAPEEDHIEETKGTLQFASRAKRITNCVQ 334 (842)
Q Consensus 304 atISPs~~~~eETLsTLrFAsRAk~IkN~~~ 334 (842)
|||||+..+++||++||+||+||+.|..+|.
T Consensus 377 a~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 377 AMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred EEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999999987664
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.3e-81 Score=685.43 Aligned_cols=306 Identities=31% Similarity=0.480 Sum_probs=242.2
Q ss_pred CceEEEEEeCCCCCCccCC-CceEEEcC---CeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCC
Q 003179 2 EKICVAVRVRPPVSLETSG-GVFWKVED---NRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGF 77 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~-~~~~~v~~---~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~Gy 77 (842)
++|+|+|||||+.+.|... ..++.+.. +.... ...+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 22 ~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~-------~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~ 94 (344)
T 3dc4_A 22 SAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLI-------VDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94 (344)
T ss_dssp SEEEEEEEECCCC-------CCSEECCSSSCSSEEE-------ETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcccccCCceEEEecCCCCCceEE-------ecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCC
Confidence 5899999999998776332 22333321 22211 2357899999999999999999999999999999999
Q ss_pred CeeEEeeccCCCCccccccCCC------CCCChHHhHHHHHHHHHHhccc---cceEEEEeeeeeecccccccccccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMNGSA------DNPGVISLGVKDIFDAIQMMSN---REFLVRVSYMEIYNEEINDLLAVENQK 148 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~Gs~------~~~GIIPRal~dLF~~I~~~~~---~ef~V~VSylEIYNE~V~DLL~~~~~~ 148 (842)
|+||||||||||||||||+|+. +++|||||++++||+.+..... ..|.|+|||+|||||+|+|||++....
T Consensus 95 N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 174 (344)
T 3dc4_A 95 QCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM 174 (344)
T ss_dssp CEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTS
T ss_pred ceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCC
Confidence 9999999999999999999874 5689999999999999986533 469999999999999999999876532
Q ss_pred ceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeE
Q 003179 149 LQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVL 228 (842)
Q Consensus 149 L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL 228 (842)
.. .+..+.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.. ..|+|
T Consensus 175 ~~------~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-----------~~skl 237 (344)
T 3dc4_A 175 PM------VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT-----------HHSRM 237 (344)
T ss_dssp BC------CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECSS-----------CEEEE
T ss_pred cc------ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEecC-----------cEEEE
Confidence 11 22345689999999999999999999999999999999999999999999996421 36999
Q ss_pred EEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCC
Q 003179 229 NLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAP 308 (842)
Q Consensus 229 ~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISP 308 (842)
+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||
T Consensus 238 ~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~---~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP 314 (344)
T 3dc4_A 238 NIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAG---HTVIPYRDSVLTTVLQASLTAQSYLTFLACISP 314 (344)
T ss_dssp EEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTT---CSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECC
T ss_pred EEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhcc---CCcCCccccHHHHHHHHHhCCCCEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999975 359999999999999999999999999999999
Q ss_pred CcCchHhHHHHHHHHHHhhcccccce
Q 003179 309 EEDHIEETKGTLQFASRAKRITNCVQ 334 (842)
Q Consensus 309 s~~~~eETLsTLrFAsRAk~IkN~~~ 334 (842)
+..+++||++||+||+||+.....|.
T Consensus 315 ~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 315 HQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred chhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999876553
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.8e-78 Score=713.94 Aligned_cols=320 Identities=37% Similarity=0.547 Sum_probs=256.1
Q ss_pred CCceEEEEEeC----CCCCCccCCC-ceEEE---------cCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHH
Q 003179 1 MEKICVAVRVR----PPVSLETSGG-VFWKV---------EDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLT 66 (842)
Q Consensus 1 mE~IrV~VRVR----P~~~~E~~~~-~~~~v---------~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~ 66 (842)
.++++|+|||| |+...|.+.+ ....+ ..+.+++..+.......++|+||+||+++++|++||+.+
T Consensus 373 l~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~- 451 (715)
T 4h1g_A 373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL- 451 (715)
T ss_dssp SCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGT-
T ss_pred HhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHH-
Confidence 47899999999 6555554333 11111 245677766655556778999999999999999999876
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc--ccceEEEEeeeeeecccccccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS--NREFLVRVSYMEIYNEEINDLLAV 144 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~--~~ef~V~VSylEIYNE~V~DLL~~ 144 (842)
.|+|+++++|||+||||||||||||||||+|. ++|||||++++||+.|+... +..|.|+|||+|||||+|+|||++
T Consensus 452 ~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~ 529 (715)
T 4h1g_A 452 SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNP 529 (715)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSC
T ss_pred HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCC
Confidence 58999999999999999999999999999994 67999999999999998643 458999999999999999999987
Q ss_pred cc---ccceeeecCC-CceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCC
Q 003179 145 EN---QKLQIHESLE-HGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSST 220 (842)
Q Consensus 145 ~~---~~L~IrEd~~-~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~ 220 (842)
.. ..+.++++.. ++++|.||+++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|++.... .
T Consensus 530 ~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~-----~ 604 (715)
T 4h1g_A 530 KIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL-----T 604 (715)
T ss_dssp CCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETT-----T
T ss_pred CCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecC-----C
Confidence 53 4566776554 4599999999999999999999999999999999999999999999999999887653 2
Q ss_pred CceEEEeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcce
Q 003179 221 DAIRVSVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKT 300 (842)
Q Consensus 221 ~~v~~SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT 300 (842)
.....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.+ +..|||||||||||||||+|||||+|
T Consensus 605 ~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~--~~~~vpyR~SkLT~lL~~slggn~~t 682 (715)
T 4h1g_A 605 KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLK--DGSHVPYRNSKLTYLLKHSLGGNSKT 682 (715)
T ss_dssp CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHC--SCCCCCGGGCHHHHHTGGGTSTTCEE
T ss_pred CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCcCCCccCHHHHHHHhhcCCCceE
Confidence 3467899999999999999999999999999999999999999999999874 34799999999999999999999999
Q ss_pred eeeecCCCCcCchHhHHHHHHHHHHhhccc
Q 003179 301 SIICTIAPEEDHIEETKGTLQFASRAKRIT 330 (842)
Q Consensus 301 ~mIatISPs~~~~eETLsTLrFAsRAk~Ik 330 (842)
+|||||||+..+++||++||+||+|||+|+
T Consensus 683 ~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 683 LMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=1.5e-30 Score=238.10 Aligned_cols=100 Identities=51% Similarity=0.688 Sum_probs=93.9
Q ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhHHHHHHHHHHhhcccc
Q 003179 252 GKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITN 331 (842)
Q Consensus 252 g~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFAsRAk~IkN 331 (842)
+.+||+||++||+||.+|+++. ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|+|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~--~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~ 78 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGT--KTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKN 78 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTC--CSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEE
T ss_pred CCcchHHHHHHHHHHHHHHhcC--CCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccC
Confidence 3589999999999999999863 47999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccccCHHHHHHHHHHHHH
Q 003179 332 CVQVNEILTDAALLKRQKLEIE 353 (842)
Q Consensus 332 ~~~vNe~~~~~~li~~lk~EI~ 353 (842)
.|.+|+..+...+++++++||+
T Consensus 79 ~~~~n~~~~~~~l~~~~~~e~~ 100 (100)
T 2kin_B 79 TVSVNLELTAEEWKKKYEKEKE 100 (100)
T ss_dssp EECCEEECCHHHHHHHHHHHHC
T ss_pred cceeccCCCHHHHHHHHHHhhC
Confidence 9999999999888888888763
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=4.4e-28 Score=227.65 Aligned_cols=98 Identities=51% Similarity=0.688 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhHHHHHHHHHHhhccccccee
Q 003179 256 NKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQV 335 (842)
Q Consensus 256 NkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~v 335 (842)
|+||++||+||.+|+++. ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|+|.|.+
T Consensus 1 N~SL~~Lg~vi~aL~~~~--~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~ 78 (117)
T 3kin_B 1 NKSLSALGNVISALAEGT--KTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSV 78 (117)
T ss_dssp CCHHHHHHHHHHHHHHSC--CSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CCCHHHHHHHHHHHHhCC--CCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCcee
Confidence 789999999999999863 369999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHH
Q 003179 336 NEILTDAALLKRQKLEIEEL 355 (842)
Q Consensus 336 Ne~~~~~~li~~lk~EI~~L 355 (842)
|+..+...++++++.+++++
T Consensus 79 n~~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 79 NLELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp CBCCCHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHHH
Confidence 99998877777666655543
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.8e-25 Score=231.16 Aligned_cols=264 Identities=10% Similarity=0.134 Sum_probs=176.9
Q ss_pred CceEEEEEeCCCC-CCccCCCceEEEcCCeEEEeecCCCCCCCcceeecEeeCCCCChH--HHHHHHHHHHHHHHhc-CC
Q 003179 2 EKICVAVRVRPPV-SLETSGGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNA--RVYELLTKDIIHAAVE-GF 77 (842)
Q Consensus 2 E~IrV~VRVRP~~-~~E~~~~~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQe--eVYe~v~~pLV~svL~-Gy 77 (842)
++|||+|||||.. + ..+.+...+..+.+ .. ..++|.||+||++.+.|+ +||+++ .++|+.+++ ||
T Consensus 24 GnIRVFcrvrp~~~p----~~~~v~y~~~~I~v-~~-----~~k~f~FDRVf~p~s~Qe~~~vf~E~-~~~i~scLd~Gy 92 (298)
T 2o0a_A 24 GTMRCYAYVMEQNLP----ENLLFDYENGVITQ-GL-----SEHVYKFNRVIPHLKVSEDKFFTQEY-SVYHDMCLNQKK 92 (298)
T ss_dssp TCCEEEEEECGGGSC----TTEEEETTTTEEEE-TT-----TCCEEECSEEEETTTSCHHHHHHHTT-HHHHHHHHHTTC
T ss_pred CceEEEEEeccccCC----ccceeecCccceee-cC-----CCceEEeeeEECccccccHHHHHHHH-HHHHHHHHhCCC
Confidence 6899999999964 3 12334555555553 11 237899999999999999 999995 899999999 99
Q ss_pred CeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeee-cccccccccc--ccccceeeec
Q 003179 78 NGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIY-NEEINDLLAV--ENQKLQIHES 154 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIY-NE~V~DLL~~--~~~~L~IrEd 154 (842)
|+||||||||||||| ||++..+|...+......|.+.+||+||| ||.++|||.. .+..+.|+.+
T Consensus 93 NvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~ 159 (298)
T 2o0a_A 93 NFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLK 159 (298)
T ss_dssp CEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETTSCCC------CEEE
T ss_pred ceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhcCCCCCCCcceEEec
Confidence 999999999999999 99999999876541228999999999999 9999999962 2346788888
Q ss_pred CCCceEecCcEEEEcCC-HHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeec
Q 003179 155 LEHGVFVAGLREEIVNS-AEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDL 233 (842)
Q Consensus 155 ~~~gv~V~gLtev~V~S-~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDL 233 (842)
..++.+|.|++.+.|.+ ++|+..++.-+...+ .|. +.-.|+.+.+..++....+. .....--++|+.+
T Consensus 160 ~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~~------~~~---~gi~i~k~~~~~~~~~~~~~--~~~~~~d~yf~e~ 228 (298)
T 2o0a_A 160 FEKHSISLDSKLVIIENGLEDLPLNFSCDEHPN------LPH---SGMGIIKVQFFPRDSKSDGN--NDPVPVDFYFIEL 228 (298)
T ss_dssp ECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC---------CCCEEEEEEEE
T ss_pred CCCCEEecccEEEEccccHHHHHHHhhcccccc------cCC---CCceEEEEEEecCccccccc--CCCCceEEEEEEe
Confidence 89999999999999999 999988884433221 121 23455555554432211111 0001123677765
Q ss_pred cCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCch
Q 003179 234 AGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHI 313 (842)
Q Consensus 234 AGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~ 313 (842)
.... +...|.+.+ ..+ -+-.|+++-+|+--|- ..|-++++++.....
T Consensus 229 ~~~~--------------------~~~~l~~~~---~~~-------~~~~spi~~il~~ll~-~tks~~~~~l~~~~~-- 275 (298)
T 2o0a_A 229 NNLK--------------------SIEQFDKSI---FKK-------ESCETPIALVLKKLIS-DTKSFFLLNLNDSKN-- 275 (298)
T ss_dssp CSHH--------------------HHHHHHHHH---HTC--------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGG--
T ss_pred CCHH--------------------HHHHHHhhc---ccc-------cccCCcHHHHHHHHHh-cCcceEEEEecCCCc--
Confidence 3221 233444433 221 2456888888876664 468889999986443
Q ss_pred HhHHHHHHHHHHhhccccccee
Q 003179 314 EETKGTLQFASRAKRITNCVQV 335 (842)
Q Consensus 314 eETLsTLrFAsRAk~IkN~~~v 335 (842)
.-.-|..++++.+++|....
T Consensus 276 --~~~lL~~s~~i~~~~~~~~~ 295 (298)
T 2o0a_A 276 --VNKLLTISEEVQTQLCKRKK 295 (298)
T ss_dssp --HHHHHHHHHHHHHHTC----
T ss_pred --hhHHHHHHHHhhcccCcccc
Confidence 33478889998888875443
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.71 E-value=0.015 Score=55.93 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=35.6
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.++||.....+..|..+++.+ ..++.++--.-...++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 467888666555677777654 455555443334567889999999999864
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.52 E-value=0.036 Score=53.95 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=33.2
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC-eeEEeeccCCCCcccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFN-GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN-~TIfAYGQTGSGKTyTM~ 96 (842)
.++||.+...+..+..+++.+ ..++...-.+.. ..|+-||++|+||||.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 467887665544566677643 344444333322 678999999999999863
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.43 E-value=0.058 Score=57.41 Aligned_cols=51 Identities=12% Similarity=0.266 Sum_probs=33.1
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.++||.+...+..+..++. .+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 3677775544334555665 33455554433445678899999999999875
No 35
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=90.66 E-value=13 Score=36.28 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhH
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESVVSSKDF 601 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (842)
+.+..|+.+++.+..+..++.....+...--..+..++.+++.+...++.-=..+-+.+..+...
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEK 70 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666555544432222333344444444433333333333333333333
No 36
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.01 E-value=1.7 Score=45.18 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=66.7
Q ss_pred hhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHH--hHhhhhhHH
Q 003179 711 LSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKE--NVLKDYNTE 788 (842)
Q Consensus 711 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 788 (842)
|..++..+-.++..|+.++..-+..++..+..++.++++..-++.+-+.+-.++.+..+++..|+..|| .+.+++...
T Consensus 23 l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~ 102 (256)
T 3na7_A 23 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIA 102 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 444555566677777777777788888888888888888888888888888888888888887777553 556666666
Q ss_pred HHHHHhHHHHHHHHH
Q 003179 789 VEKKKNLEEEIKQFS 803 (842)
Q Consensus 789 ~~~~~~~~~~~~~~~ 803 (842)
..|...++.+|..+-
T Consensus 103 ~~~i~~lE~eile~~ 117 (256)
T 3na7_A 103 KERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666655554443
No 37
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.97 E-value=0.81 Score=57.34 Aligned_cols=35 Identities=14% Similarity=0.370 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 60 RVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 60 eVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
.||... .....+++ +|.|.||+..|.+|||||.+.
T Consensus 151 Hi~aia-~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 151 HIYAIA-DTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CHHHHH-HHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred cHhhhH-HHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 355433 33333433 799999999999999999764
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.49 E-value=0.22 Score=52.26 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=31.1
Q ss_pred ecEeeCCCCChHHHHHHHHHHHHHHHhcCCC----eeEEeeccCCCCccccc
Q 003179 48 FDHVFEETCSNARVYELLTKDIIHAAVEGFN----GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 48 FD~VF~~~asQeeVYe~v~~pLV~svL~GyN----~TIfAYGQTGSGKTyTM 95 (842)
||.+|+..---..+.+.++..++...+...+ ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4444444333456667777777776654222 36788999999999864
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.45 E-value=0.56 Score=58.77 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 003179 537 RDVQKLKRQLENVTEE 552 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~ 552 (842)
.++..++.+++.+...
T Consensus 864 ~eL~el~~~L~~le~~ 879 (1184)
T 1i84_S 864 EELQRTKERQQKAEAE 879 (1184)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 40
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.25 E-value=0.32 Score=45.25 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 344455555667789999999999999863
No 41
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=87.08 E-value=3.6 Score=44.64 Aligned_cols=240 Identities=12% Similarity=0.182 Sum_probs=126.1
Q ss_pred CceEEEEEeCCCCCCccCCCceEEEcCCeEEEeecCCCCCCCcceeecEeeCCCC-ChHHHHHHHHHHHHHHHh-cCCCe
Q 003179 2 EKICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETC-SNARVYELLTKDIIHAAV-EGFNG 79 (842)
Q Consensus 2 E~IrV~VRVRP~~~~E~~~~~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~a-sQeeVYe~v~~pLV~svL-~GyN~ 79 (842)
|.||+++=+-+-..+ ....+...+..++ . ...+..|.|++|++... +-.+++..-.+..++-++ .+.|+
T Consensus 59 G~IRcFAYi~~~~~p---~~~~idY~~~~It--~----~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~Nf 129 (333)
T 4etp_B 59 GTMRVYAYVMEQNLP---ENLLFDYENGVIT--Q----GLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNF 129 (333)
T ss_dssp TCCEEEEEECCSSCC---SSCEEETTTTEEE--C------CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCE
T ss_pred CcEEEEEEECcccCC---ccEEEecccceEe--e----cCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCe
Confidence 568888877663222 1333444455554 1 13568999999997765 334444444588899999 99999
Q ss_pred eEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhc---cccceEEEEeeeeeeccc-ccccccccc----c--cc
Q 003179 80 TVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMM---SNREFLVRVSYMEIYNEE-INDLLAVEN----Q--KL 149 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~---~~~ef~V~VSylEIYNE~-V~DLL~~~~----~--~L 149 (842)
.|+..|+.- + +.....|+..+... -...|.+.+-|+-+-++. ..|||.+.. . .+
T Consensus 130 slIsis~~~------------w----~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~l 193 (333)
T 4etp_B 130 NLISLSTTP------------H----GSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKL 193 (333)
T ss_dssp EEEEEESSC------------C----CHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC----------C
T ss_pred eEEEecCCC------------c----HHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceE
Confidence 999998641 1 23444555555543 246788999998888776 699998652 1 22
Q ss_pred eeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEE
Q 003179 150 QIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLN 229 (842)
Q Consensus 150 ~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~ 229 (842)
.+.++ .+.+ +-+.+.+.+..+.+..+..-. +..+. ....-.|+.+.+.....+.++. . ....-.++
T Consensus 194 kiee~---sI~l-dS~~i~i~~~~~~l~~~~kl~-------~~~~~-~~~GI~IlKfqf~~~~~~~~~n-~-~~~~~~fY 259 (333)
T 4etp_B 194 KFEKH---SISL-DSKLVIIENGLEDLPLNFSAD-------EHPNL-PHSGMGIIKVQFFPRDSKSDGN-N-DPVPVDFY 259 (333)
T ss_dssp EEETT---EEEC-CSCCEEESSGGGGSCTTSSCC-------C---------CEEEEEEEEECC----------CCCEEEE
T ss_pred Eeecc---eEee-cceEEEeccccccchhhhccc-------cCCCC-CCCCceEEEEEEEecCcccccc-c-CCcceeEE
Confidence 23321 2222 233445554443332222110 00000 1123446666665544321111 0 11123578
Q ss_pred EeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCC
Q 003179 230 LVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPE 309 (842)
Q Consensus 230 LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs 309 (842)
||.+-+.. ....|.++|..= -.-.|+++-+|+--|. ..+.++|+++...
T Consensus 260 FiEi~~~~--------------------ti~~l~~~i~~~----------~~~~spi~~ilkkLl~-~TKS~flfnl~~~ 308 (333)
T 4etp_B 260 FIELNNLK--------------------SIEQFDKSIFKK----------ESAETPIALVLKKLIS-DTKSFFLLNLNDS 308 (333)
T ss_dssp EEEECSHH--------------------HHHHHHSCC--------------CCCCHHHHHHHHHHH-HSBCEEEEEECCS
T ss_pred EEEecChh--------------------HHHHHHhhcCcc----------cccCCCHHHHHHHHHh-hCcceEEEEcCCc
Confidence 88775543 223333333211 1234667777765443 4688999999766
Q ss_pred cC
Q 003179 310 ED 311 (842)
Q Consensus 310 ~~ 311 (842)
..
T Consensus 309 ~~ 310 (333)
T 4etp_B 309 KN 310 (333)
T ss_dssp TT
T ss_pred ch
Confidence 54
No 42
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.32 E-value=0.28 Score=49.74 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=32.4
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHH-----HHHHhcCCCeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDI-----IHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pL-----V~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+.||.+.+.+.....+.+.+ ..+ ...+-......|+-||++|+|||+..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 3578899998876666665533 221 11111122345899999999999876
No 43
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.47 E-value=0.3 Score=49.70 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=21.8
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.|+||.+.+.+..-..+.+ .+..+. ..+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 4789998765422222222 223333 23467888999999999875
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.24 E-value=0.37 Score=50.60 Aligned_cols=49 Identities=24% Similarity=0.549 Sum_probs=30.7
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcC-CCeeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEG-FNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G-yN~TIfAYGQTGSGKTyTM~ 96 (842)
..|+||.++... .+...+.. +..++.. .| ....++-||++|+|||+.+.
T Consensus 6 ~~~~f~~fv~g~-~~~~a~~~-~~~~~~~--~~~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 6 PKYTLENFIVGE-GNRLAYEV-VKEALEN--LGSLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TTCCSSSCCCCT-TTHHHHHH-HHHHHHT--TTTSCSSEEEECSSSSSHHHHHH
T ss_pred CCCCcccCCCCC-cHHHHHHH-HHHHHhC--cCCCCCeEEEECCCCCcHHHHHH
Confidence 458898876432 34445543 2333332 12 33568999999999999864
No 45
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.98 E-value=1.1 Score=50.25 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=49.2
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHH-HHhc--CC--CeeEEeeccCCCCcccccc--------------CC---CCCC
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIH-AAVE--GF--NGTVFAYGQTSSGKTFTMN--------------GS---ADNP 102 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~--Gy--N~TIfAYGQTGSGKTyTM~--------------Gs---~~~~ 102 (842)
.-+||.|-+-+.--+++.+.+..|+.. ..+. |. .-.|+-||++|+|||++.- |+ ....
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence 356777777654445566666555543 2222 32 2359999999999997652 11 2345
Q ss_pred ChHHhHHHHHHHHHHhc
Q 003179 103 GVISLGVKDIFDAIQMM 119 (842)
Q Consensus 103 GIIPRal~dLF~~I~~~ 119 (842)
|--++.++++|......
T Consensus 248 Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 248 GEGPRMVRDVFRLAREN 264 (428)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHc
Confidence 88889999999887654
No 46
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.81 E-value=0.38 Score=44.85 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 344455555667788999999999998764
No 47
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.12 E-value=0.33 Score=50.89 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=29.5
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..|+||.|++.+ .+... +...++.+..+.|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 458899887643 33332 233344444556999999999999875
No 48
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.37 E-value=1.9 Score=48.54 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=49.2
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHH-HHhc--CC--CeeEEeeccCCCCcccccc--------------CC---CCCC
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIH-AAVE--GF--NGTVFAYGQTSSGKTFTMN--------------GS---ADNP 102 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~--Gy--N~TIfAYGQTGSGKTyTM~--------------Gs---~~~~ 102 (842)
..+||.|-+-+.--+++.+.+.-|+.. ..+. |. .-.|+-||++|+|||++.- |+ ....
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI 256 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSS
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccc
Confidence 456788877654455666666666543 2333 32 3469999999999998652 11 2345
Q ss_pred ChHHhHHHHHHHHHHhc
Q 003179 103 GVISLGVKDIFDAIQMM 119 (842)
Q Consensus 103 GIIPRal~dLF~~I~~~ 119 (842)
|--.+.++.+|......
T Consensus 257 Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 257 GESARIIREMFAYAKEH 273 (437)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 77788899999887654
No 49
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.19 E-value=0.25 Score=50.00 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=29.3
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHH-HHHhcCC----CeeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDII-HAAVEGF----NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV-~svL~Gy----N~TIfAYGQTGSGKTyTM~ 96 (842)
..++||.|.+.+.....+-+ +...+- ..++.++ ...|+-||++|+|||+.+-
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 45788988776533333322 221110 1223322 2238999999999999863
No 50
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.16 E-value=0.29 Score=49.98 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=31.3
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHH-----HHhcCCCeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIH-----AAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~-----svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+.||.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3578888887654444444444332211 111134456899999999999865
No 51
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.02 E-value=0.48 Score=51.19 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 63 ELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 63 e~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+..-+-..+-.|...+|+-||++|+|||.++
T Consensus 30 ~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 30 TRIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333333444444788889999999999999875
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.61 E-value=0.39 Score=50.38 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=31.5
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHH-Hh----cCCCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHA-AV----EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~s-vL----~GyN~TIfAYGQTGSGKTyTM 95 (842)
.++||.|.+.+..-+.+.+.+..|+... .+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 4678888776544455555544442211 11 123456899999999999875
No 53
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.12 E-value=9.2 Score=38.66 Aligned_cols=65 Identities=23% Similarity=0.399 Sum_probs=33.3
Q ss_pred ccchhhHHHH---hhhhhhhhhHhhh-------hchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 003179 700 KEEESTCWKE---KLSSELNTIKEKY-------HGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSES 767 (842)
Q Consensus 700 ~~~~~~~~~~---~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (842)
...|.++||+ .+.+++..+...| ..||.+|.. .|+.+..+...|......|+.|.+++-.|+..+
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~---eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEA---QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999988 3344444443333 344444432 233333355555555555555555555555444
No 54
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.45 E-value=0.92 Score=51.05 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=50.8
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHH-HHhc--C--CCeeEEeeccCCCCcccccc--------------CC---CCCC
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIH-AAVE--G--FNGTVFAYGQTSSGKTFTMN--------------GS---ADNP 102 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~--G--yN~TIfAYGQTGSGKTyTM~--------------Gs---~~~~ 102 (842)
.-+||.|-+-+.--+++.+.+..|+.. ..+. | ..-.|+-||++|+|||++.- |+ ....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhccc
Confidence 457888877765556677777766652 2332 3 23468999999999997652 11 2345
Q ss_pred ChHHhHHHHHHHHHHhc
Q 003179 103 GVISLGVKDIFDAIQMM 119 (842)
Q Consensus 103 GIIPRal~dLF~~I~~~ 119 (842)
|--.+.++.+|......
T Consensus 257 Gese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 257 GEGAKLVRDAFALAKEK 273 (434)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhc
Confidence 77888899999877654
No 55
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=81.06 E-value=43 Score=32.63 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 003179 538 DVQKLKRQLENVTEEKNEFQRKY 560 (842)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~ 560 (842)
++..+..+|+.+..+...+...+
T Consensus 14 ~~~~~~~~~~~l~~~l~~l~~~~ 36 (284)
T 1c1g_A 14 DKENALDRADEAEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 56
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.80 E-value=7.1 Score=48.70 Aligned_cols=55 Identities=16% Similarity=0.364 Sum_probs=33.4
Q ss_pred hhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccc
Q 003179 713 SELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQT 770 (842)
Q Consensus 713 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (842)
.+++....++..+|..+ .++.++..+...+|++|...|+.+.|.|-..+.+..+.
T Consensus 998 ~~~~~~~ke~~~lee~~---~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~ 1052 (1080)
T 2dfs_A 998 KELHQTQTEKKTIEEWA---DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443334444444333 23335566788888888888888888887666665553
No 57
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=80.09 E-value=0.78 Score=51.11 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=29.6
Q ss_pred CcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 43 GTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 43 ~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
...|+||...... ++...+..+ ..+... .|....++-||++|+|||+.+.
T Consensus 99 ~~~~tfd~fv~g~-~n~~a~~~~-~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 99 NPDYTFENFVVGP-GNSFAYHAA-LEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CTTCSGGGCCCCT-TTHHHHHHH-HHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCCChhhcCCCC-chHHHHHHH-HHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 3568898765332 334344332 222222 2313468899999999999874
No 58
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.36 E-value=0.47 Score=48.88 Aligned_cols=52 Identities=10% Similarity=0.220 Sum_probs=31.0
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHH-HHhc---CCCeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIH-AAVE---GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~---GyN~TIfAYGQTGSGKTyTM 95 (842)
....||.|.+.+..-..+.+.+..|+.. ..+. .....|+-||++|+|||+..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3467888877543334444444333321 1112 23567999999999999875
No 59
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=79.08 E-value=0.99 Score=42.90 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=17.0
Q ss_pred cCCCeeEEeeccCCCCcccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|-...++-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4444459999999999998753
No 60
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.06 E-value=2.8 Score=46.79 Aligned_cols=74 Identities=24% Similarity=0.293 Sum_probs=50.0
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHH-Hhc--CC--CeeEEeeccCCCCcccccc--------------CC---CCCCC
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHA-AVE--GF--NGTVFAYGQTSSGKTFTMN--------------GS---ADNPG 103 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~s-vL~--Gy--N~TIfAYGQTGSGKTyTM~--------------Gs---~~~~G 103 (842)
-+||.|-+-+.--+++.+.+.-|+... .+. |. .-.|+-||++|+|||...- |+ ....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 567777776655566666666665432 233 32 3469999999999998652 21 23457
Q ss_pred hHHhHHHHHHHHHHhc
Q 003179 104 VISLGVKDIFDAIQMM 119 (842)
Q Consensus 104 IIPRal~dLF~~I~~~ 119 (842)
--.+.++.+|......
T Consensus 225 ese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 225 EGSRMVRELFVMAREH 240 (405)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7889999999887654
No 61
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.97 E-value=0.84 Score=44.47 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=28.0
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCcccccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
++||.++... .+..++..+ ..+. .+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~~-~~~~~~~~l-----~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPAA-GNDELIGAL-----KSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHHH-----HHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCCC-CCHHHHHHH-----HHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 5666655532 344555432 2333 3356778999999999998764
No 62
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.30 E-value=4.3 Score=45.81 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=48.6
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHH-HHhc--C--CCeeEEeeccCCCCcccccc--------------CC---CCCC
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIH-AAVE--G--FNGTVFAYGQTSSGKTFTMN--------------GS---ADNP 102 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~--G--yN~TIfAYGQTGSGKTyTM~--------------Gs---~~~~ 102 (842)
.-+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||++|+|||.+.- |+ ....
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSS
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccC
Confidence 346677766554445566666555432 2222 3 23579999999999997542 21 2346
Q ss_pred ChHHhHHHHHHHHHHhc
Q 003179 103 GVISLGVKDIFDAIQMM 119 (842)
Q Consensus 103 GIIPRal~dLF~~I~~~ 119 (842)
|--.+.++.+|......
T Consensus 258 Gesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhc
Confidence 88889999999987664
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.82 E-value=0.96 Score=44.33 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
++..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4555678876 67889999999987
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=77.54 E-value=0.5 Score=49.66 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHHHHh-cCCCeeEEeeccCCCCcccccc
Q 003179 57 SNARVYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 57 sQeeVYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.++...+.+.. .+..++ .+....++-||++|+|||+++.
T Consensus 23 gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 23 HREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp TCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 34555554432 233333 3455689999999999998763
No 65
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=77.43 E-value=1.1 Score=43.23 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3455667866 577889999999754
No 66
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.20 E-value=1.3 Score=45.28 Aligned_cols=21 Identities=29% Similarity=0.140 Sum_probs=18.1
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM 95 (842)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556678999999999999875
No 67
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.86 E-value=0.43 Score=49.15 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=29.0
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHH-HHHhcCC----CeeEEeeccCCCCcccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDII-HAAVEGF----NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV-~svL~Gy----N~TIfAYGQTGSGKTyTM~ 96 (842)
..++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|||||+.+-
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 45788888766433233322 221110 1223322 2238999999999999763
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=76.62 E-value=1.1 Score=43.09 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=17.9
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
+..+++|.| ++..++||||||.+
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHH
Confidence 445677866 57778999999987
No 69
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.19 E-value=0.51 Score=50.83 Aligned_cols=50 Identities=14% Similarity=0.315 Sum_probs=28.6
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHH----hcCCCeeEEeeccCCCCccccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAA----VEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~sv----L~GyN~TIfAYGQTGSGKTyTM 95 (842)
..||.|.+.+..-..+.+.+..|+...- +.+....|+-||++|+|||+..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 5677776543322333333333221111 2345667999999999999875
No 70
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.10 E-value=14 Score=38.40 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhccccccchh-------hHHhHhhhhhHHHHHHHhHHHHH-HHHHHHHHhhcccee
Q 003179 743 YDSLEREFRLLQEERDSLLNKVSESSQTLTMVTD-------QKENVLKDYNTEVEKKKNLEEEI-KQFSVAFACRQKSLV 814 (842)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 814 (842)
|.+|.+|++.++.+...|-..+-+-...+.-... .-..+-.+|.....+.+.--.+| +......+.|..-..
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~ 171 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE 171 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777776666666655544443321111 11111112222222222222222 223334456665555
Q ss_pred eehhhhHHHHHhhhh
Q 003179 815 SFHSDLKSKIEKLRA 829 (842)
Q Consensus 815 ~~~~~~~~~~~~~~~ 829 (842)
.+-.++.+.-+.+|.
T Consensus 172 ~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 172 KTEPKIYSFYERIRR 186 (256)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 666777777777775
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=75.16 E-value=1.8 Score=45.71 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=28.2
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC-e--eEEeeccCCCCccccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFN-G--TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN-~--TIfAYGQTGSGKTyTM 95 (842)
|.++.+++ ++...+.+. ..+..++.|.. . .++-||++|+|||+++
T Consensus 14 ~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 14 YVPKRLPH----REQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CCCSCCTT----CHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 44454443 444554443 34455555543 4 6899999999999875
No 72
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.82 E-value=0.7 Score=49.19 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=30.2
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHH-HHhcCC---CeeEEeeccCCCCccccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIH-AAVEGF---NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~-svL~Gy---N~TIfAYGQTGSGKTyTM 95 (842)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46777776554334444444444322 222332 246899999999999875
No 73
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.05 E-value=27 Score=33.41 Aligned_cols=64 Identities=14% Similarity=0.301 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 347 RQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQN 415 (842)
Q Consensus 347 ~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~ 415 (842)
.++.+++.|+.++.. ...++..|+.++.......+.+..++++.++...+++..+..++..+.+
T Consensus 72 k~~~~~~~L~~~l~~-----~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 72 KAKKMADSLSLDIEN-----KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566555543 4566667776666666666666666666666666666666555555443
No 74
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=73.95 E-value=1.4 Score=43.93 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
..+..+++|.+ ++..++||||||.+
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence 34556678877 57888999999987
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.70 E-value=1.5 Score=46.49 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=26.0
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|+.+++ |..+.+. +-..+-.|--..++-||++|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4566664 4444443 3333345533337889999999999874
No 76
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.36 E-value=1.6 Score=46.03 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=31.7
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCe--eEEeeccCCCCcccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNG--TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~--TIfAYGQTGSGKTyTM~ 96 (842)
.+.||.+.+. +.+...+ ..++..+..|... .++-||++|+|||+...
T Consensus 40 ~~~~~~ivG~----~~~~~~l-~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRAA-GVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEESC----HHHHHHH-HHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccCh----HHHHHHH-HHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 4668877764 3443332 3455555667654 89999999999998763
No 77
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.31 E-value=1.7 Score=49.43 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=48.0
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHH-HHhc--C--CCeeEEeeccCCCCcccccc--------------CC---CCCC
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIH-AAVE--G--FNGTVFAYGQTSSGKTFTMN--------------GS---ADNP 102 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~--G--yN~TIfAYGQTGSGKTyTM~--------------Gs---~~~~ 102 (842)
..+||.|-+-+.--+++.+.+.-|+.. ..+. | .--.|+-||++|+|||++.- |+ ....
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 356777776654445555555555433 2333 3 23469999999999997542 11 2345
Q ss_pred ChHHhHHHHHHHHHHhc
Q 003179 103 GVISLGVKDIFDAIQMM 119 (842)
Q Consensus 103 GIIPRal~dLF~~I~~~ 119 (842)
|--.+.++.+|......
T Consensus 285 Gesek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 285 GEGARMVRELFEMARTK 301 (467)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 77788899999877654
No 78
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=72.98 E-value=1.1 Score=46.26 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=16.3
Q ss_pred CCCeeEEeeccCCCCccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM 95 (842)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34446999999999999875
No 79
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=72.66 E-value=0.62 Score=47.09 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=28.1
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhc---------CCCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVE---------GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~---------GyN~TIfAYGQTGSGKTyTM 95 (842)
.+.||.|.+.+..-+.+.+ ++..+.. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAE-----LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHH-----HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHH-----HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 4678888776433333332 2322211 23446899999999999875
No 80
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=72.59 E-value=0.97 Score=45.26 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=19.9
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+..+++|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34556678877 678899999999873
No 81
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.17 E-value=1.7 Score=48.54 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=23.1
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+++..++..-.+.|...|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 45566666667789999999999999974
No 82
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=71.77 E-value=1.7 Score=43.06 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=18.9
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..+++|.| ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 4455678877 567789999999863
No 83
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=70.75 E-value=1.8 Score=42.34 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=18.8
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3456677877 566789999999864
No 84
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=70.02 E-value=0.67 Score=48.30 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=27.0
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHH-HHhcCCC----eeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIH-AAVEGFN----GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~GyN----~TIfAYGQTGSGKTyTM 95 (842)
..+||.|-+.+.--+.+.+.+..|+-. .++.+++ ..|+-||++|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 356777665544444555555444422 2334333 22899999999999875
No 85
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=69.83 E-value=1.8 Score=47.16 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
++.+++.--.+.|.-.|+||||||.+|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4445555556688999999999999974
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=69.77 E-value=0.99 Score=43.46 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=17.9
Q ss_pred HHHhcCCCeeEEeeccCCCCcccccc
Q 003179 71 HAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 71 ~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..+++|.+ ++..|+||+|||.+..
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 34456765 5678999999999753
No 87
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=68.96 E-value=1.6 Score=41.28 Aligned_cols=18 Identities=17% Similarity=0.599 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457779999999999864
No 88
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.81 E-value=2.5 Score=47.04 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=32.2
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCC--eeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFN--GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN--~TIfAYGQTGSGKTyTM 95 (842)
..+.||.|.+ |+++.+.+ ..++..+..|.. ..|+-||++|+|||+..
T Consensus 32 ~~~~~~~iiG----~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 32 AKQAASGLVG----QENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp BCSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhhchhhccC----HHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 3566777775 45555543 345666666654 36888999999999875
No 89
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.81 E-value=2.4 Score=44.81 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=28.6
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcC-CCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEG-FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G-yN~TIfAYGQTGSGKTyTM 95 (842)
.|.++.+++ ++...+.+. ..+..++.| ....|+-||++|+|||+++
T Consensus 16 ~~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 16 LSVFKEIPF----REDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHCSSCTT----CHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 344444443 445555443 344454444 4558999999999999865
No 90
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=68.75 E-value=1.6 Score=44.69 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
.++..++.|.| +++.++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 34555677876 67889999999986
No 91
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=68.73 E-value=2.1 Score=42.11 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.0
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..+++|.|. +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34556788775 67789999999863
No 92
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=68.46 E-value=2.2 Score=42.85 Aligned_cols=25 Identities=40% Similarity=0.452 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..+++|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455677877 566789999999864
No 93
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=68.30 E-value=3.6 Score=41.05 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.5
Q ss_pred CCeeEEeeccCCCCcccccc
Q 003179 77 FNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~ 96 (842)
....|+-||++|+|||+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 44568999999999998753
No 94
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=68.17 E-value=8.4 Score=33.86 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=53.9
Q ss_pred HhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 003179 709 EKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT 772 (842)
Q Consensus 709 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (842)
+.+..+|+.+..+.+.||..+..-++.|++|+.+...+..|+..+-+--|.=+..+++-.|+|+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4577789999999999999999999999999999999999988888888877777777666654
No 95
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=68.03 E-value=9.6 Score=32.96 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=53.8
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT 772 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (842)
.+..+|+.+..+.+.||..+..-++.|++|+.+...+..|+..+-+--|.=++.+++-.|+|+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999998888888877777777666654
No 96
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=67.88 E-value=1.2 Score=48.40 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=28.2
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHH-Hhc---CCCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHA-AVE---GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~s-vL~---GyN~TIfAYGQTGSGKTyTM 95 (842)
.+.||.|.+.+.--+.+.+.+..++... ++. .-...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3567777764432233333332222210 011 22357999999999999865
No 97
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=67.88 E-value=1.1 Score=47.28 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=29.0
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHH-HhcCC---CeeEEeeccCCCCccccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHA-AVEGF---NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~s-vL~Gy---N~TIfAYGQTGSGKTyTM 95 (842)
.+||.|.+.+..-+.+.+.+..|+... .+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 567877765433334444443333211 11221 346899999999999875
No 98
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=67.25 E-value=1.3 Score=47.73 Aligned_cols=51 Identities=14% Similarity=0.267 Sum_probs=30.2
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHH-HHhcC---CCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIH-AAVEG---FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~G---yN~TIfAYGQTGSGKTyTM 95 (842)
..+||.|.+.+..-..+.+.+..|+-. .++.+ ....|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 467888876654444444444333221 12222 1235888999999999875
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.91 E-value=1.1e+02 Score=42.56 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=48.5
Q ss_pred hhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHH
Q 003179 713 SELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKK 792 (842)
Q Consensus 713 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (842)
.+|....+++...+.+|..-+..|+..++.|+.+-+|-+.|+.|-+..-.++..+ +.++..|..|..|-
T Consensus 2021 ~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA-----------~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2021 NAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS-----------IALLDNLNSERGRW 2089 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhccccH
Confidence 3444444444444444444444444455555555555555555544444444433 45666677777664
Q ss_pred Hh----HHHHHH------HHHHHHHhhccceeee
Q 003179 793 KN----LEEEIK------QFSVAFACRQKSLVSF 816 (842)
Q Consensus 793 ~~----~~~~~~------~~~~~~~~~~~~~~~~ 816 (842)
.+ ++.+++ .+|.||-.=-|.|..-
T Consensus 2090 ~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~ 2123 (3245)
T 3vkg_A 2090 EQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQN 2123 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHH
Confidence 33 333333 4678888777766653
No 100
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=66.86 E-value=2.9 Score=39.92 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999998753
No 101
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.81 E-value=2.6 Score=44.76 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45667778888 678899999999873
No 102
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=66.65 E-value=2.1 Score=42.82 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=18.7
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.++..+..|- .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3455555664 4678899999999754
No 103
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=66.37 E-value=2.3 Score=42.53 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=18.2
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..+++|.|. +..++||||||.+.
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 34456678764 56679999999873
No 104
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=66.29 E-value=2.4 Score=44.55 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+..++.|-+.-+++.++||||||.+.
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3456667774455788999999999873
No 105
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=65.74 E-value=2.7 Score=41.72 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=17.7
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
+..+++|.| ++..++||||||.+
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 445677877 46678999999987
No 106
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.32 E-value=1.6 Score=45.68 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=16.7
Q ss_pred CCCeeEEeeccCCCCccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM 95 (842)
+....|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44568999999999999875
No 107
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=65.30 E-value=2.9 Score=42.63 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.5
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999875
No 108
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=65.08 E-value=3.4 Score=38.26 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.0
Q ss_pred CCeeEEeeccCCCCcccccc
Q 003179 77 FNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~ 96 (842)
.+..|+-||++|+|||+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 34457889999999998764
No 109
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=64.75 E-value=2.9 Score=42.41 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=18.7
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..+++|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 4555678866 566779999999874
No 110
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.19 E-value=1.3 Score=49.36 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=27.9
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHH-HHhcC---CCeeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIH-AAVEG---FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~G---yN~TIfAYGQTGSGKTyTM 95 (842)
...||.|.+.+..-..+.+.+..|+.. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 466777766432222233322222211 12222 2356899999999999875
No 111
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=63.89 E-value=3.4 Score=42.34 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=25.4
Q ss_pred ecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 48 FDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 48 FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
|+.+.+ |+++.+.+ ...+-.|....++-||++|+|||++..
T Consensus 24 ~~~~~g----~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 24 LDDIVG----QEHIVKRL----KHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp TTTCCS----CHHHHHHH----HHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred HHHhhC----CHHHHHHH----HHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 455443 45555433 222334544458999999999998753
No 112
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=63.87 E-value=3.4 Score=43.69 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=23.8
Q ss_pred HHHHHHHhcCC---CeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVEGF---NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~Gy---N~TIfAYGQTGSGKTyTM~ 96 (842)
...+..++.|. -.||+-||+.|+|||+...
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 44577888887 3489999999999998753
No 113
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=62.99 E-value=3.2 Score=43.93 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.++..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3456667775566788899999999873
No 114
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=62.97 E-value=2 Score=42.18 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=17.5
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
+..+++|.|+ +..++||||||.+
T Consensus 35 i~~~~~~~~~--lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 35 IPGALRGESM--VGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHTCCE--EEECCSSHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHH
Confidence 4555678664 6678999999987
No 115
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=62.91 E-value=2.9 Score=42.88 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|+-+|++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57999999999999875
No 116
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=62.82 E-value=3.1 Score=43.54 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=20.0
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..++.|-+..++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345567774455788899999999864
No 117
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=62.53 E-value=3.1 Score=45.78 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
..+..++.|.+..++..|+||||||.+
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 345666778667789999999999977
No 118
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=62.30 E-value=2.8 Score=43.46 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=17.1
Q ss_pred CCCeeEEeeccCCCCcccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.-...+.-.|+||||||.+|.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHH
Confidence 345678889999999999874
No 119
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=62.14 E-value=2.5 Score=48.06 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=29.3
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHH-----HHHhcCCCeeEEeeccCCCCccccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDII-----HAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV-----~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..||.+.+.+..-+.+.+.+..++- ...--.....|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 4566666554333445554443321 1111234567999999999999865
No 120
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=61.87 E-value=3.2 Score=44.23 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+..+++|.| ++..++||||||.+.
T Consensus 66 ~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 66 RAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 34566778877 577789999999764
No 121
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=61.76 E-value=3.2 Score=38.50 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.5
Q ss_pred CCCeeEEeeccCCCCccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM 95 (842)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566899999999999864
No 122
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.34 E-value=2.8 Score=43.66 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=25.9
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|+.+++.+. +. ..+...+..|....++-||++|+|||+++.
T Consensus 35 ~~~~i~g~~~----~~----~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 35 NLDEVTAQDH----AV----TVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp STTTCCSCCT----TH----HHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhhCCHH----HH----HHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 4666665432 22 233334445533448999999999998763
No 123
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=60.49 E-value=4.7 Score=42.11 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=27.9
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHh--cCCCeeEEeeccCCCCccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAV--EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL--~GyN~TIfAYGQTGSGKTyTM 95 (842)
+||.+.+ ++.+...+ ..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4666654 44555443 23444443 344567999999999999865
No 124
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=60.35 E-value=22 Score=33.70 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH-HHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHH------HHHHHHHHhhccce
Q 003179 741 EMYDSLEREFRLLQEERDSLLN-KVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEI------KQFSVAFACRQKSL 813 (842)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 813 (842)
...+.++.=..+|.+|++-|.. .=. ..|.-++.+|..++..|.....+|..+-+.+ .-+...+ .....+
T Consensus 15 ~~~~~l~~L~~lL~~E~~~L~~~~d~---~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~-~~~~~l 90 (154)
T 3opc_A 15 RENALVVEFLHALEAETEALMDRRAH---ESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAA-AAHPEL 90 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHH-HHCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHH-HhChHH
Confidence 3444455555667777776655 333 3667777999999999998888777775542 1122222 345567
Q ss_pred eeehhhhHHHHHhhhhcC
Q 003179 814 VSFHSDLKSKIEKLRAQN 831 (842)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~ 831 (842)
...+.+++..++.|+..|
T Consensus 91 ~~~w~~l~~l~~~c~~~N 108 (154)
T 3opc_A 91 GPLWQALQANAAQAREHN 108 (154)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777888888998888766
No 125
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=59.73 E-value=3.7 Score=41.95 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=17.8
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+..+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 445567776 566789999999865
No 126
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=59.73 E-value=3.5 Score=43.68 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=18.6
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 3455667876 577789999999764
No 127
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=59.32 E-value=3 Score=42.86 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHhcCCC--eeEEeeccCCCCcccccc
Q 003179 70 IHAAVEGFN--GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 70 V~svL~GyN--~TIfAYGQTGSGKTyTM~ 96 (842)
+..++.|.- .+++-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 445555632 469999999999998754
No 128
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=58.61 E-value=4.4 Score=46.07 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=19.0
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
++..+..|.+.++++ ++||||||.+++
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 344444576665555 899999999965
No 129
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=58.09 E-value=4 Score=47.51 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|..++..-.. .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 35555543333 4667999999999964
No 130
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=57.57 E-value=4.7 Score=46.08 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=16.7
Q ss_pred hcCCCeeEEeeccCCCCcccccc
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
-.|.+ |.-.|+||||||+||.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 36665 6778999999999874
No 131
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=57.27 E-value=3.3 Score=42.31 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=17.1
Q ss_pred cCCCeeEEeeccCCCCcccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|....++-||++|+|||++..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 4544458999999999998753
No 132
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=57.26 E-value=6.5 Score=40.52 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=26.3
Q ss_pred eecEeeCCCCChHHHHHHHHHHHHHHHh--cCCCeeEEeeccCCCCccccc
Q 003179 47 AFDHVFEETCSNARVYELLTKDIIHAAV--EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 47 ~FD~VF~~~asQeeVYe~v~~pLV~svL--~GyN~TIfAYGQTGSGKTyTM 95 (842)
+||.+.+. ..+...+ ..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig~----~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQ----ERLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSC----HHHHHHH-HHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCH----HHHHHHH-HHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 56666554 3333332 23333333 234567889999999999775
No 133
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=57.23 E-value=5.2 Score=42.48 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.0
Q ss_pred HHHhcC---CCeeEEe--eccCCCCcccccc
Q 003179 71 HAAVEG---FNGTVFA--YGQTSSGKTFTMN 96 (842)
Q Consensus 71 ~svL~G---yN~TIfA--YGQTGSGKTyTM~ 96 (842)
..+..| -...++- ||++|+|||+.+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 555666 5567888 9999999998763
No 134
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=57.00 E-value=9 Score=40.06 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCC-----CeeEEeeccCCCCccccc
Q 003179 64 LLTKDIIHAAVEGF-----NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 64 ~v~~pLV~svL~Gy-----N~TIfAYGQTGSGKTyTM 95 (842)
.+...++..++.|+ ...|+..|++|||||+..
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 34456666666553 346889999999999864
No 135
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=56.80 E-value=4.5 Score=43.01 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=18.3
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+..++.|.|. +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4456788774 67789999999764
No 136
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.51 E-value=37 Score=30.98 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=34.1
Q ss_pred HHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 003179 708 KEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNK 763 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (842)
|.-|-++-=.|..+|+.+|.|-..-+++-..+-.+...|+.|++-|+.|+.-|++.
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343445555555555544444444445567778888888888888888765
No 137
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=56.34 E-value=4.1 Score=41.25 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=18.2
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+..++++.+ ++.+|+||+|||++..
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 344566655 6677899999999854
No 138
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=55.99 E-value=3.1 Score=43.57 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 57 sQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|+++-..+ ...+..| ..|+-||++|+|||+.+.
T Consensus 31 g~~~~~~~l----~~~l~~~--~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 31 GQKYMINRL----LIGICTG--GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp SCHHHHHHH----HHHHHHT--CCEEEESCCCHHHHHHHH
T ss_pred CcHHHHHHH----HHHHHcC--CeEEEECCCCCcHHHHHH
Confidence 345554433 3333444 357889999999998763
No 139
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=55.41 E-value=66 Score=31.95 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003179 369 QEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNHNSLV 420 (842)
Q Consensus 369 ~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~v 420 (842)
.-+..|.......+.+...|+.+|+++++.+....+.+.+++.++..|..-+
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El 106 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEV 106 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555667777888888899999999888888888888888776554
No 140
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=55.34 E-value=23 Score=33.92 Aligned_cols=17 Identities=6% Similarity=0.086 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhhHhh
Q 003179 662 QCKVFCEKLKSTISALI 678 (842)
Q Consensus 662 ~~~~~~~~~~~~~~~~~ 678 (842)
....+...|+..|+.+.
T Consensus 29 ~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 29 YLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555555555554
No 141
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.63 E-value=39 Score=33.06 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=47.3
Q ss_pred hhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHH
Q 003179 720 EKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEI 799 (842)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (842)
.+-..|+.+|..-++.|+.++.+...||.. +++.+.|...++ .+......+..+|..|..+|...+.+.
T Consensus 13 n~qs~LeD~L~~~R~el~~~~~ri~~lE~~----r~~~~~l~~~~~-------~~~~e~~~L~~~l~~E~~~R~~aE~~~ 81 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQKAAIENYNQL----KEDYNTLKRELS-------DRDDEVKRLREDIAKENELRTKAEEEA 81 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHH----HHHHHHHHTHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888888764 344444443322 255666677778888887776555444
Q ss_pred HHH
Q 003179 800 KQF 802 (842)
Q Consensus 800 ~~~ 802 (842)
+++
T Consensus 82 ~~i 84 (154)
T 2ocy_A 82 DKL 84 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 142
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=54.12 E-value=3.3 Score=47.07 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=28.1
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHH-----hcC----CCeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAA-----VEG----FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~sv-----L~G----yN~TIfAYGQTGSGKTyTM 95 (842)
..++||.|.+.+..-.++. .++..+ +.+ ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~-----e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELK-----EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHH-----HHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHH-----HHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 4567888876543322332 233322 122 2345999999999999875
No 143
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=53.98 E-value=3.6 Score=44.93 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=20.5
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
++..+.-.-...|.-.|+||||||++|.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHH
Confidence 3444443445678899999999999874
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=53.68 E-value=6.9 Score=41.50 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999986
No 145
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.80 E-value=18 Score=41.10 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=40.3
Q ss_pred HHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003179 708 KEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKV 764 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (842)
++.+..+...++++.+.++.++....+..++.++.|+.+++|...++..-+.-.+++
T Consensus 504 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 504 SDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 567788888888888888888877777777777777777776666665554444433
No 146
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=52.70 E-value=76 Score=29.50 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=48.9
Q ss_pred hhhhhhhhhHhhhhchhhhhh----hhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhh
Q 003179 710 KLSSELNTIKEKYHGLEKDLD----LNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDY 785 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (842)
.|..|+..++.||....++-. .-...+...+...+.|-..++-|...+|.|-+.- ++++.-=+++=.-|
T Consensus 14 ~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~-------R~t~~SLeD~E~k~ 86 (111)
T 2v66_B 14 RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK-------RATIVSLEDFEQRL 86 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH-------HHHHhhHHHHHHHH
Confidence 677778888888877655422 2223333344444444455555555555554321 11222235566778
Q ss_pred hHHHHHHHhHHHHHH
Q 003179 786 NTEVEKKKNLEEEIK 800 (842)
Q Consensus 786 ~~~~~~~~~~~~~~~ 800 (842)
|..++|--=|+.||.
T Consensus 87 n~aiErnalLE~El~ 101 (111)
T 2v66_B 87 NQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999886
No 147
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=52.62 E-value=7.7 Score=40.30 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888999999999863
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.48 E-value=6 Score=40.42 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=17.1
Q ss_pred hcCCCeeEEeeccCCCCcccccc
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
-.|.-..++-||++|+|||++..
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHHH
Confidence 34443348999999999998753
No 149
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=52.20 E-value=5.6 Score=41.73 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=18.9
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..++.|.+ ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556677876 566789999999864
No 150
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=51.93 E-value=28 Score=34.03 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=42.3
Q ss_pred HhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHH-------HHHHHHHHHHHHHHhHHHHHHHh
Q 003179 709 EKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEM-------YDSLEREFRLLQEERDSLLNKVS 765 (842)
Q Consensus 709 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 765 (842)
+.|..++..+..++..|+.++...+..++..+.- +..+|.++.-|++|++.|++++-
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888887776666666655554 45567788888888888887754
No 151
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=51.69 E-value=8.9 Score=40.17 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=16.3
Q ss_pred CCeeEEeeccCCCCcccccc
Q 003179 77 FNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~ 96 (842)
....++-||++|+|||+++.
T Consensus 37 ~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568999999999998763
No 152
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=51.32 E-value=7.1 Score=43.82 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
.++..++.|-+.-+++.++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 345666766566788999999999986
No 153
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=51.27 E-value=5.8 Score=42.61 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
++..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3455677875 57889999999984
No 154
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=51.21 E-value=13 Score=34.94 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=50.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHH---------HHHHHHHH
Q 003179 737 ETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEI---------KQFSVAFA 807 (842)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 807 (842)
....+.++.++.=..+|.+|++-|...= ...|.-++.+|+.++..|+.-..+|..+...+ ..+..+ +
T Consensus 10 ~~L~~~~~~l~~L~~lL~~E~~~L~~~d---~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~ 85 (157)
T 2fup_A 10 DLFAEDIGHANQLLQLVDEEFQALERRE---LPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-R 85 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-c
Confidence 3334444555555566666766664432 33566667888888888877666665554432 222111 2
Q ss_pred hhccceeeehhhhHHHHHhhhhcC
Q 003179 808 CRQKSLVSFHSDLKSKIEKLRAQN 831 (842)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~ 831 (842)
.-...+...+..++..++.|+..|
T Consensus 86 ~~~~~l~~~~~~l~~l~~~~~~~N 109 (157)
T 2fup_A 86 ADGAELLARGDELGELLERCQQAN 109 (157)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 223334455666777777776655
No 155
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=51.16 E-value=4.3 Score=41.57 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=16.8
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+..++.|.++ +..++||||||.+..
T Consensus 122 i~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 122 VFEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 3344555444 338999999998754
No 156
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.00 E-value=5 Score=44.97 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 57 SNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 57 sQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.|+.+... ...+...+-.|.-..|+-||++|+|||+..
T Consensus 30 Gq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 30 GQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 35555421 133444444566578999999999999875
No 157
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.39 E-value=83 Score=35.59 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003179 344 LLKRQKLEIEELRRKLQ 360 (842)
Q Consensus 344 li~~lk~EI~~Lr~~L~ 360 (842)
.+..++.++++.+..+.
T Consensus 478 ~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 478 LLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhhcC
Confidence 34555555665555544
No 158
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=50.36 E-value=19 Score=29.09 Aligned_cols=44 Identities=27% Similarity=0.429 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhH
Q 003179 741 EMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNL 795 (842)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (842)
++|+.|-+.++.||.|+.-|.+++..-|..|+ .|.+|..-||++
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~dNS~~ls-----------kLE~ets~mKev 46 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELEDNSNHLT-----------KLETEASNMKEV 46 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH-----------HHHhhhhhHHHH
Confidence 47999999999999999999999988776554 456666555543
No 159
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.27 E-value=66 Score=29.27 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 003179 347 RQKLEIEELRRKL 359 (842)
Q Consensus 347 ~lk~EI~~Lr~~L 359 (842)
.++.++..|..++
T Consensus 9 ~lre~l~~le~~~ 21 (97)
T 2eqb_B 9 QLKEDYNTLKREL 21 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 160
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=49.96 E-value=6.4 Score=38.61 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=21.6
Q ss_pred HHHHHHhcC-C--CeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEG-F--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~G-y--N~TIfAYGQTGSGKTyTM~ 96 (842)
+-++.++.| + ...+.-+|++|+|||+.+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 456777753 3 4467889999999998764
No 161
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=49.90 E-value=6.3 Score=40.70 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=17.5
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+..+++|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 444566632 3567799999999874
No 162
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=49.83 E-value=6.6 Score=44.10 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=19.7
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+..++.|-+..++..++||||||.+.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 45567774456788899999999873
No 163
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.72 E-value=7.8 Score=43.34 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=20.7
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
++..+..+....++-||++|+|||+...
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 4444445566678899999999998864
No 164
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=49.54 E-value=80 Score=25.95 Aligned_cols=40 Identities=28% Similarity=0.542 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 370 EILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQ 409 (842)
Q Consensus 370 ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~ 409 (842)
-+..|+.+......+..+|..-++++++++..++..+...
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666677888899999999998888777544
No 165
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=49.47 E-value=4 Score=42.81 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=18.8
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4555667866 467789999999873
No 166
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=49.00 E-value=7.2 Score=43.04 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=18.8
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3455677877 566789999999874
No 167
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=48.84 E-value=6.9 Score=42.86 Aligned_cols=25 Identities=36% Similarity=0.415 Sum_probs=18.9
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..++.|.| +++.++||||||.+.
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 3455678876 577789999999863
No 168
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=48.69 E-value=4.5 Score=48.68 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=21.7
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccccC
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~G 97 (842)
.++..+..+....++-||++|+|||+.+.+
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 344444556555678899999999998753
No 169
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=47.81 E-value=9.1 Score=44.29 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+|..++.|.+ +++.++||+|||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 34556678887 577889999999863
No 170
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=47.68 E-value=6.9 Score=45.41 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.1
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3567899999999999874
No 171
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.34 E-value=59 Score=31.85 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003179 371 ILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNHN 417 (842)
Q Consensus 371 i~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~ 417 (842)
+..+.......+.+..+|..++.+++..+.+.+.........+++|+
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445556666666676666666666666666666666663
No 172
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=47.34 E-value=8 Score=41.38 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.5
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999875
No 173
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=47.11 E-value=3.1 Score=47.49 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=27.7
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHHH-----hcCC----CeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHAA-----VEGF----NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~sv-----L~Gy----N~TIfAYGQTGSGKTyTM 95 (842)
..++||.|.+.+..-.++ ..++..+ +..+ ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l-----~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEEL-----KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHH-----HHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHH-----HHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 457788887654222222 2233322 2222 224899999999999875
No 174
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=46.91 E-value=10 Score=42.11 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 56 CSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 56 asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..|.+++..+. ..+..| ...++..|..|||||+++.
T Consensus 28 ~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 28 EGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp HHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 45777766543 333333 3478999999999998763
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.87 E-value=5.7 Score=41.59 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=14.3
Q ss_pred EEeeccCCCCcccccc
Q 003179 81 VFAYGQTSSGKTFTMN 96 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~ 96 (842)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999863
No 176
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=46.87 E-value=13 Score=37.77 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCC-----eeEEeeccCCCCcccc
Q 003179 62 YELLTKDIIHAAVEGFN-----GTVFAYGQTSSGKTFT 94 (842)
Q Consensus 62 Ye~v~~pLV~svL~GyN-----~TIfAYGQTGSGKTyT 94 (842)
|+.+...++..++.|+. ..|+-.|++|||||+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 33333444555555443 3588999999999975
No 177
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=46.84 E-value=8.2 Score=42.41 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=18.0
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445567876 466789999999773
No 178
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.69 E-value=29 Score=30.93 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHH----Hhcchhhhhhhhcc
Q 003179 543 KRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVI----REIPRRLYESVVSS 598 (842)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 598 (842)
++=-+....+..+++....+...-|..|..+|.+|++|+..+ ..+|.++...+++|
T Consensus 28 rrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~~~~~ 87 (87)
T 1hjb_A 28 RKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSGHC 87 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhccccCC
Confidence 344467777788888888888888999999999998888754 45677777777766
No 179
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.56 E-value=87 Score=27.63 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchhHHHHHHHhhh
Q 003179 540 QKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESVVSSKDFYEDLLCSMK 610 (842)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (842)
..|..+++.+.+...-|+-..++.+.=|..+..+..+++......+..+++|.+-..+..+-...+|+.|.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666666666666666667777777777777777777777777777888888888888888888888875
No 180
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=46.16 E-value=1.1e+02 Score=27.50 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=30.3
Q ss_pred hhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccc
Q 003179 714 ELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTL 771 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (842)
+.....+++..++.++..-++..+..-+-..+|-+.+..|.++.|.+...+.++.++|
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445555555666666666666655555554443
No 181
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=46.13 E-value=9.1 Score=40.24 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.8
Q ss_pred CCCeeEEeeccCCCCccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM 95 (842)
..+..|+-||++|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678999999999999864
No 182
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=45.21 E-value=1.1e+02 Score=27.36 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=8.1
Q ss_pred hhhHHHHHHHhHHHHHH
Q 003179 784 DYNTEVEKKKNLEEEIK 800 (842)
Q Consensus 784 ~~~~~~~~~~~~~~~~~ 800 (842)
.|.....++.+.+.++.
T Consensus 73 kLe~~ek~~~~AE~eva 89 (101)
T 3u59_A 73 KLEQAEKKATDAEAEVA 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444555555554
No 183
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=45.19 E-value=7.6 Score=37.47 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=20.2
Q ss_pred HHHHHHhc-CC--CeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVE-GF--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~-Gy--N~TIfAYGQTGSGKTyTM~ 96 (842)
+.++.++. |+ ...+.-+|++|||||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 44566664 43 2356778999999998764
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=45.08 E-value=8.7 Score=37.04 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=22.3
Q ss_pred HHHHHHhc-CCC--eeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVE-GFN--GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~-GyN--~TIfAYGQTGSGKTyTM~ 96 (842)
+-++.++. |+. ..+.-+|++|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 45677775 554 468899999999998764
No 185
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=44.88 E-value=8.3 Score=44.77 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=18.1
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
|..++. +..++..|++|||||+|+.
T Consensus 189 v~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 189 VKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 444443 3456789999999999975
No 186
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=44.82 E-value=12 Score=36.68 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=19.1
Q ss_pred HHHHHHHhc--CCCeeEEeeccCCCCccccc
Q 003179 67 KDIIHAAVE--GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 67 ~pLV~svL~--GyN~TIfAYGQTGSGKTyTM 95 (842)
..+++.+.. +-...|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 34456677899999999865
No 187
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=44.07 E-value=1.6e+02 Score=27.20 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 382 ELEREKLQLELEEERRSRKERDQCVREQQMRLQ 414 (842)
Q Consensus 382 e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~ 414 (842)
|.+...+.+.+++..-.+.+++..+.-++..|.
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555544443
No 188
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.59 E-value=77 Score=39.59 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.2
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM 95 (842)
++.|-||+.-|.+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 799999999999999999763
No 189
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.33 E-value=96 Score=26.80 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003179 392 LEEERRSRKERDQCVREQQMRLQNHNSL 419 (842)
Q Consensus 392 lee~~~~~~e~e~~~~e~q~~i~~l~~~ 419 (842)
+++......+.+..+.+++.+++.+.+.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333344445666777888888777653
No 190
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=43.30 E-value=9.4 Score=44.01 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4455667876 577799999999875
No 191
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=43.23 E-value=11 Score=42.76 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=19.7
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
++..++.|-+.-+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 45556655555678889999999986
No 192
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=42.70 E-value=6.4 Score=41.98 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.2
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999864
No 193
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=42.65 E-value=1.1e+02 Score=26.02 Aligned_cols=51 Identities=16% Similarity=0.009 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 342 AALLKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLEL 392 (842)
Q Consensus 342 ~~li~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~el 392 (842)
....+.++.|+..|+.++....+..--....+|+..+.+...+.+.+..++
T Consensus 5 ~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 5 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999887654433344555555555444444444443
No 194
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=42.48 E-value=15 Score=35.83 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=19.1
Q ss_pred HHHHHHhc---CCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVE---GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~---GyN~TIfAYGQTGSGKTyTM 95 (842)
.+++.+.. +-...|.-.|++|||||+.+
T Consensus 9 ~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 34444443 33456888899999999875
No 195
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=42.41 E-value=9 Score=41.93 Aligned_cols=24 Identities=21% Similarity=0.030 Sum_probs=17.7
Q ss_pred HHHHhcCCCeeEEeeccCCCCccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+..++.|.+ ++..|+||||||.+.
T Consensus 102 i~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 102 LERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 445566644 667789999999985
No 196
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.37 E-value=1.1e+02 Score=27.14 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 367 LEQEILKLRNDMLKYELEREKLQLELE 393 (842)
Q Consensus 367 ~e~ei~kLr~~~~~~e~e~e~l~~ele 393 (842)
.+.+|..|+..+.....++.++..+++
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444444444443
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=42.29 E-value=11 Score=36.58 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=20.7
Q ss_pred HHHHHHhc-CC--CeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVE-GF--NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~-Gy--N~TIfAYGQTGSGKTyTM 95 (842)
+-++.++. |+ ...+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45667774 44 346788899999999876
No 198
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=42.26 E-value=9.3 Score=40.52 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=18.4
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.+..++.| .++..++||+|||.+..
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 45566777 44566899999998764
No 199
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=42.03 E-value=14 Score=43.34 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=45.5
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccCCC---CCCChH----HhHHHHHHHHHHh
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSA---DNPGVI----SLGVKDIFDAIQM 118 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~---~~~GII----PRal~dLF~~I~~ 118 (842)
|.+.. |.|...|..-+.. ++..+-.|... ....|.||||||+||..-. ..|-|| ......|++.+..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHH
Confidence 44444 4788888877765 45555666543 3457999999999996311 112111 1234555555554
Q ss_pred c-cccceEEEEee
Q 003179 119 M-SNREFLVRVSY 130 (842)
Q Consensus 119 ~-~~~ef~V~VSy 130 (842)
. ++..+....||
T Consensus 76 ~~~~~~V~~fps~ 88 (664)
T 1c4o_A 76 LFPENAVEYFISY 88 (664)
T ss_dssp HCTTSEEEECCCG
T ss_pred HCCCCeEEEcCch
Confidence 3 34445555666
No 200
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=41.61 E-value=7.3 Score=35.60 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.3
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999843
No 201
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=41.53 E-value=7.1 Score=37.21 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..+.-.|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356778999999999875
No 202
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=41.48 E-value=12 Score=42.82 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=18.4
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..+..|. .|+-||++|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 344444553 5788999999999876
No 203
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=41.44 E-value=11 Score=37.62 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=18.0
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+++++-.|-- +.-.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 34555545543 445899999999876
No 204
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.31 E-value=50 Score=28.54 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=29.7
Q ss_pred hhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccc
Q 003179 714 ELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTL 771 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (842)
++....+++..++.++..-++..+..-+-+.+|.|.+.+|.++-|.....+.....+|
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445444444444444445555555555566666555555555444433
No 205
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=40.89 E-value=8.3 Score=44.07 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.5
Q ss_pred CCCeeEEeeccCCCCcccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM~ 96 (842)
-.++.++..|..|||||+|+.
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHH
Confidence 346678899999999999975
No 206
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=39.98 E-value=15 Score=38.86 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..+.-.|++|||||+|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 36778899999999987
No 207
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.83 E-value=17 Score=43.02 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=20.7
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
++..+..+....++-||++|+|||....
T Consensus 192 l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 4444445666678999999999998754
No 208
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=39.72 E-value=2.4e+02 Score=26.36 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003179 341 DAALLKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNHNSL 419 (842)
Q Consensus 341 ~~~li~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~ 419 (842)
.+.+|..|+.+|+.|+.++...... ....+..| +.....|..+|++.+....+.--....+++.++.+...
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E-~q~~v~ql-------~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTE-SQRVVLQL-------KGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999998764211 12223333 33344445555554443333333444555666655333
No 209
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=39.63 E-value=72 Score=29.31 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHH
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIR 585 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (842)
-+|.-||..||..+|...++++.|.+...--..+...++.|+.+...++
T Consensus 30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999886444445555555555554444
No 210
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.55 E-value=14 Score=41.61 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=16.0
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
...++-||++|+|||++..
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578899999999998863
No 211
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=39.14 E-value=15 Score=44.58 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=35.8
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHH-HHhcCCC----eeEEeeccCCCCccccc
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIH-AAVEGFN----GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~-svL~GyN----~TIfAYGQTGSGKTyTM 95 (842)
..+||.|-+-+..-+++.+.+.-|+.. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 457888877776666777666666543 3445544 36999999999999764
No 212
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=39.02 E-value=7.7 Score=43.26 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.9
Q ss_pred HhcCCCeeEEeeccCCCCccccc
Q 003179 73 AVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 73 vL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+++|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 58899999999999999999854
No 213
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=39.00 E-value=7.8 Score=40.83 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=16.7
Q ss_pred HHhcCCCeeEEeeccCCCCccccc
Q 003179 72 AAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 72 svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999765
No 214
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=38.95 E-value=8.2 Score=36.93 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=13.1
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566799999999875
No 215
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=38.55 E-value=7.8 Score=41.85 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=14.9
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
|.-++..|+||||||+++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHH
Confidence 3445677999999999874
No 216
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=38.34 E-value=14 Score=42.58 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=17.6
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
+..++.|.| ++..++||||||..
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHH
Confidence 445567877 46778999999985
No 217
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=38.17 E-value=9.7 Score=37.37 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
-.|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999875
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=38.16 E-value=15 Score=43.22 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=20.9
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
+++.+.......++-||++|+|||+.+.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 4444445556668889999999999865
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.14 E-value=17 Score=42.89 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCC------eeEEeeccCCCCccccc
Q 003179 58 NARVYELLTKDIIHAAVEGFN------GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 58 QeeVYe~v~~pLV~svL~GyN------~TIfAYGQTGSGKTyTM 95 (842)
|..+-..+... +..+..|.. +.|+-||++|+|||++.
T Consensus 496 q~~a~~~l~~~-i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 496 QDEAVVAVAKA-VRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp CHHHHHHHHHH-HHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred hHHHHHHHHHH-HHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 45555444333 333444443 37999999999999874
No 220
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=38.02 E-value=26 Score=42.11 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=35.7
Q ss_pred cceeecEeeCCCCChHHHHHHHHHHHHHH-Hhc----CCCeeEEeeccCCCCccccc
Q 003179 44 TSYAFDHVFEETCSNARVYELLTKDIIHA-AVE----GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 44 ~sF~FD~VF~~~asQeeVYe~v~~pLV~s-vL~----GyN~TIfAYGQTGSGKTyTM 95 (842)
..+.||.|.+.+..-+.+.+.+..|+... ++. .....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 45789999888766677776665554432 222 12346899999999999765
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=37.82 E-value=18 Score=43.41 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999875
No 222
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=37.71 E-value=3.3e+02 Score=27.70 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=35.7
Q ss_pred HHHHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHH
Q 003179 706 CWKEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQE 755 (842)
Q Consensus 706 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (842)
.|.+........+.+....+++++......++.+|..|+.+-++.+.++.
T Consensus 102 ~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~ 151 (301)
T 2efk_A 102 KYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQ 151 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443334444566677777888888888889999999998888876654
No 223
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=37.58 E-value=42 Score=29.03 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=29.6
Q ss_pred hhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 003179 716 NTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSE 766 (842)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (842)
..|+.|.+.|..+...-...++.+.......+....-+..|..+|-.++..
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~ 52 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKG 52 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356677777776666555555555555555555555555555555555543
No 224
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=37.51 E-value=12 Score=36.75 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=19.1
Q ss_pred HHHHhcC-C--CeeEEeeccCCCCcccccc
Q 003179 70 IHAAVEG-F--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 70 V~svL~G-y--N~TIfAYGQTGSGKTyTM~ 96 (842)
++.++.| + ...+.-+|++|+|||..+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4555533 3 3467889999999998753
No 225
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=37.40 E-value=1.4e+02 Score=26.27 Aligned_cols=33 Identities=9% Similarity=0.206 Sum_probs=19.8
Q ss_pred hchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHH
Q 003179 723 HGLEKDLDLNNKFLETSKEMYDSLEREFRLLQE 755 (842)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (842)
+.|+.+|...-+.|+++..+...||..+..|+.
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~ 34 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMER 34 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456778888888888888888888887776654
No 226
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=37.29 E-value=1.7e+02 Score=26.38 Aligned_cols=57 Identities=16% Similarity=0.018 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 340 TDAALLKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLELEEER 396 (842)
Q Consensus 340 ~~~~li~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~elee~~ 396 (842)
......+.++.|+.+|+.++....+..--..-.+|+..+.+...+.+.+..++...+
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k 76 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 76 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999998876544334455666666665555555555554433
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=36.99 E-value=9.1 Score=36.63 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=13.3
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999865
No 228
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=36.37 E-value=9 Score=36.79 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=12.9
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|.-.|++|||||+++
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 229
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=35.91 E-value=10 Score=35.87 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|.-.|++|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999865
No 230
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=35.86 E-value=22 Score=41.90 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999875
No 231
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=35.68 E-value=13 Score=44.75 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..++..|+.|||||+|+.
T Consensus 376 ~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 346789999999999975
No 232
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=35.68 E-value=17 Score=37.34 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..++-||+.|+|||..+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 678899999999998763
No 233
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.64 E-value=73 Score=28.08 Aligned_cols=48 Identities=25% Similarity=0.509 Sum_probs=36.4
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHHHHhhH---HHH-Hhhhhh---hhhhHhhhHHH
Q 003179 534 ENY-RDVQKLKRQLENVTEEKNEFQRKYS---EEK-ILNARL---TGEISELRQEV 581 (842)
Q Consensus 534 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~---~~~~~~~~~~~ 581 (842)
+.+ .||..|+-+++....++.+-+++.. +++ .|+.+| ..||.-|+.+.
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567 9999999999999999999998875 333 777777 33555555443
No 234
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=35.58 E-value=14 Score=44.51 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=18.0
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
|..++.+ ..++..|++|||||+|+.
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 3444432 356789999999999975
No 235
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=35.50 E-value=8.2 Score=42.17 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
+.-++.+|+||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 556789999999999986
No 236
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=35.46 E-value=11 Score=41.81 Aligned_cols=24 Identities=13% Similarity=-0.105 Sum_probs=18.5
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
+..+++|.+. +++.|+||||||.+
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 3456778665 56779999999987
No 237
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=35.43 E-value=9.5 Score=39.68 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.8
Q ss_pred CCeeEEeeccCCCCccccc
Q 003179 77 FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM 95 (842)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567888999999999765
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=35.25 E-value=26 Score=37.69 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=15.2
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
...|.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346778899999999987
No 239
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=35.13 E-value=11 Score=34.98 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|.+|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999984
No 240
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=34.46 E-value=13 Score=41.16 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=17.0
Q ss_pred HHHhcCCCeeEEeeccCCCCcccccc
Q 003179 71 HAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 71 ~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
..++.|.+ ++..|+||||||.+..
T Consensus 123 ~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 123 FEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 33445544 4677999999999864
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=34.45 E-value=9.7 Score=37.22 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999886
No 242
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.44 E-value=1.8e+02 Score=25.61 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003179 367 LEQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNHNSL 419 (842)
Q Consensus 367 ~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~ 419 (842)
+-+|+..|+..+...+.|+......|.-.+.....+.+.+......|+.+...
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45666666666666666666666655555544444555555555555555443
No 243
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=34.40 E-value=15 Score=42.55 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=18.6
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.+..++. +..++..|+.|||||+++.
T Consensus 197 Av~~~~~--~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAG--HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHHh--CCEEEEEcCCCCCHHHHHH
Confidence 3444443 3567778999999999874
No 244
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.21 E-value=69 Score=36.95 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHH-Hhhhhh---------hhhhH-hhhHHHHHHHhcchhhhhhhhcchhHHHHH
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEK-ILNARL---------TGEIS-ELRQEVLVIREIPRRLYESVVSSKDFYEDL 605 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (842)
.-|+.||++++....-..+..+-|.... .|..++ ..|++ ||++-+..|++-=......+..-+...+++
T Consensus 64 krINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq 143 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ 143 (562)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666444444444343333 333333 23666 888888888876666668888888899999
Q ss_pred HHhhhhhccCC
Q 003179 606 LCSMKSFAADG 616 (842)
Q Consensus 606 ~~~~~~~~~~~ 616 (842)
+..||.+=-|.
T Consensus 144 ~~kIQRLEvDI 154 (562)
T 3ghg_A 144 LVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999875443
No 245
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.09 E-value=52 Score=31.62 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=40.3
Q ss_pred hchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHH
Q 003179 723 HGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIK 800 (842)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (842)
+.||.+|..-+..+..++.+...+|+ ++++.+.|...+ ..+......+..+|..|..+|...|.+.+
T Consensus 4 s~LEd~L~~~r~~l~~~~~~~~~le~----l~~~l~~l~~~l-------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~ 70 (135)
T 2e7s_A 4 GSLEEQLNKSLKTIASQKAAIENYNQ----LKEDYNTLKREL-------SDRDDEVKRLREDIAKENELRTKAEEEAD 70 (135)
T ss_dssp --CCSTTTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHT-------TTHHHHHHTHHHHHHHTTSHHHHHHHTTH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777766655 455555554333 34455666677777777766655544433
No 246
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=33.99 E-value=1.3e+02 Score=28.05 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 345 LKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLE 391 (842)
Q Consensus 345 i~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~e 391 (842)
+.+++.++..++..+. ....+++++.-.+.++..-...++++..+
T Consensus 47 idelk~ei~q~~~~lE--~I~vLkaQv~IY~~DF~aERadREkl~~e 91 (110)
T 2v4h_A 47 IDKLKEEAEQHKIVME--TVPVLKAQADIYKADFQAERHAREKLVEK 91 (110)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchhhHHHHHhH
Confidence 3344444444444332 13344444444444444333334444433
No 247
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=33.94 E-value=11 Score=36.95 Aligned_cols=18 Identities=39% Similarity=0.383 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..+.-.|++|||||..+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 356668999999998774
No 248
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=33.92 E-value=9.3 Score=39.00 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=16.6
Q ss_pred CeeEEeeccCCCCccccccC
Q 003179 78 NGTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~G 97 (842)
...++-||++|+|||..++|
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 35678899999999998764
No 249
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=33.72 E-value=7.9 Score=37.79 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=15.3
Q ss_pred eEEeeccCCCCccccccC
Q 003179 80 TVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~G 97 (842)
.++-||+.|+|||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567899999999998763
No 250
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=33.67 E-value=12 Score=35.28 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=13.1
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999974
No 251
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.27 E-value=3e+02 Score=25.53 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 003179 345 LKRQKLEIEELRRKLQGSH 363 (842)
Q Consensus 345 i~~lk~EI~~Lr~~L~~~~ 363 (842)
..++..|++.+|.++...+
T Consensus 12 ~~~L~~E~e~~k~K~~~~~ 30 (111)
T 2v66_B 12 NQRLKYEVEALKEKLEHQY 30 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577788888888887643
No 252
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=33.12 E-value=13 Score=43.19 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=17.4
Q ss_pred CCeeEEeeccCCCCcccccc
Q 003179 77 FNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~ 96 (842)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46788899999999999975
No 253
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=33.10 E-value=11 Score=39.07 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=16.5
Q ss_pred eeEEeeccCCCCccccccC
Q 003179 79 GTVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~G 97 (842)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4689999999999999863
No 254
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=33.09 E-value=13 Score=39.59 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35667799999999987
No 255
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.08 E-value=1.9e+02 Score=31.72 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003179 365 GVLEQEILKLRNDMLKYELER-----------EKLQLELEEERRSRKERDQCVREQQMRLQNHNSL 419 (842)
Q Consensus 365 ~~~e~ei~kLr~~~~~~e~e~-----------e~l~~elee~~~~~~e~e~~~~e~q~~i~~l~~~ 419 (842)
..+++++.+++..+.+.+... +.|..+..+-++..+|++..+.+|..+|+++...
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777666665554432 1222222233345566677777777777766443
No 256
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=32.94 E-value=4e+02 Score=26.97 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=30.5
Q ss_pred hhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHH
Q 003179 714 ELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEE 756 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (842)
.-..+.+....+.+++......++.+|..|+..-++.+.++..
T Consensus 117 ~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~ 159 (305)
T 2efl_A 117 ERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQY 159 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666677777777888888888888888887766553
No 257
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=32.87 E-value=23 Score=38.62 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|.-.|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 36778899999999987
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=32.87 E-value=13 Score=34.82 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999864
No 259
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=32.62 E-value=18 Score=44.67 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=18.0
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
+|..+++|.+ ++..|+||||||.+
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3455677754 68899999999954
No 260
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=32.57 E-value=11 Score=36.61 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999876
No 261
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=32.52 E-value=12 Score=35.72 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.5
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999865
No 262
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=32.43 E-value=18 Score=42.93 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=18.8
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 4455678876 466789999999874
No 263
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.21 E-value=87 Score=27.64 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=31.1
Q ss_pred hhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHH
Q 003179 717 TIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSL 760 (842)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (842)
+|+|+.......+..-...|.++..++..|+.|++.|+++-.-|
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554444555555567788999999999999988876654
No 264
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=31.92 E-value=26 Score=41.80 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHh-cCCCeeEEeeccCCCCcccccc
Q 003179 61 VYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 61 VYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
||.-. ......++ ++.|.||+.-|.+|||||.+.-
T Consensus 77 ifaiA-~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 112 (697)
T 1lkx_A 77 MYALA-NDAYRSMRQSQENQCVIISGESGAGKTEASK 112 (697)
T ss_dssp HHHHH-HHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred HHHHH-HHHHHHHHhcCCCcEEEecCCCCCCchhhHH
Confidence 66433 23333333 7999999999999999998753
No 265
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=31.90 E-value=13 Score=35.15 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 5788999999999854
No 266
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=31.88 E-value=22 Score=42.82 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=25.3
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 54 ETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 54 ~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
+..-|..++..+ ....-.|....++..|+||||||...
T Consensus 369 lt~~Q~~ai~~I----~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 369 LTNAQKRAHQEI----RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCHHHHHHHHHH----HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCHHHHHHHHHH----HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 444465555443 34445566567788999999999864
No 267
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=31.79 E-value=15 Score=36.38 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=9.3
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 268
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=31.73 E-value=17 Score=44.34 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=18.8
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..++.|.| ++..++||||||.+.
T Consensus 256 ai~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCchHHHHH
Confidence 3455578877 466789999999874
No 269
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=31.45 E-value=2e+02 Score=28.94 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=43.4
Q ss_pred hhhhhhhhhHhhhhchhhh----hhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhh
Q 003179 710 KLSSELNTIKEKYHGLEKD----LDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDY 785 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (842)
.|..++..++.||..+..+ ...-...+...++.+.+|-..+.-|...+|.|-...--.+ .-=+++=..|
T Consensus 67 ~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~-------~SleD~e~kl 139 (189)
T 2v71_A 67 RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI-------MSLEDFEQRL 139 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------hhHHHHHHHH
Confidence 5566666666666666555 2223333444555555666666666666666554332111 1113334455
Q ss_pred hHHHHHHHhHHHHHH
Q 003179 786 NTEVEKKKNLEEEIK 800 (842)
Q Consensus 786 ~~~~~~~~~~~~~~~ 800 (842)
|..++|--=|+.|+.
T Consensus 140 n~aiEr~alLE~El~ 154 (189)
T 2v71_A 140 NQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666555555554
No 270
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=31.26 E-value=13 Score=35.39 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.4
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|.-.|++|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999875
No 271
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=31.11 E-value=11 Score=42.65 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=18.3
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
++..+++|.++ +..++||||||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 34556788765 55679999999864
No 272
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.97 E-value=69 Score=35.51 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=53.8
Q ss_pred hhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhh
Q 003179 711 LSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDY 785 (842)
Q Consensus 711 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (842)
++.......+.++.+|.+...-++..+...++...|++|...++.+-+.+...+.+..+++--.+.+|.++...|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 444444555556666666666678888888888888888888888888888888888777765555666655443
No 273
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=30.93 E-value=15 Score=37.78 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..++-||+.|+|||..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 589999999999998763
No 274
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.70 E-value=1.3e+02 Score=34.81 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=31.2
Q ss_pred hhhhhhhhhHhhhhchhh------------------hhhhhhhhHHhhHHHHH-HHHHHHHHHHHHhHHHHHHH
Q 003179 710 KLSSELNTIKEKYHGLEK------------------DLDLNNKFLETSKEMYD-SLEREFRLLQEERDSLLNKV 764 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 764 (842)
-+.++++.|+.+|..+.+ .+...+ ..+...-.|. .|||.+.-||++-++-++.+
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnI 133 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHI 133 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666544 333333 2333333344 78888888888877766544
No 275
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=30.62 E-value=40 Score=37.80 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..|+..|++|+|||+|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467777999999999864
No 276
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=30.53 E-value=12 Score=40.39 Aligned_cols=20 Identities=35% Similarity=0.325 Sum_probs=14.9
Q ss_pred cCCCeeEEeeccCCCCcccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.|-+ |.-.|+||||||+++-
T Consensus 174 ~G~~--i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 174 LERV--IVVAGETGSGKTTLMK 193 (361)
T ss_dssp TTCC--EEEEESSSSCHHHHHH
T ss_pred cCCE--EEEECCCCCCHHHHHH
Confidence 5554 4455999999999873
No 277
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=30.48 E-value=1.3e+02 Score=28.05 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=49.6
Q ss_pred hhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHH
Q 003179 714 ELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKK 793 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (842)
++++|+......|+.|.......+..|+..+.++.++ ....|.-.|=+---.|...|+.-|.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l------------------E~I~vLkaQv~IY~~DF~aERadRE 86 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM------------------ETVPVLKAQADIYKADFQAERHARE 86 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHccchhhHH
Confidence 5666666666666655554444444444333333222 2233333555666678999999999
Q ss_pred hHHHHHHHHHHHHHhhccc
Q 003179 794 NLEEEIKQFSVAFACRQKS 812 (842)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~ 812 (842)
.+-+|+.++...++.=|++
T Consensus 87 kl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 9999999888877755544
No 278
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=30.47 E-value=27 Score=36.84 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHhcCC-CeeEEeeccCCCCccccc
Q 003179 58 NARVYELLTKDIIHAAVEGF-NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 58 QeeVYe~v~~pLV~svL~Gy-N~TIfAYGQTGSGKTyTM 95 (842)
|.++++.. ...+-.|. ...++-||+.|+|||.+.
T Consensus 7 ~~~~~~~l----~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEKL----VASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHHH----HHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHHH----HHHHHcCCcceeEEEECCCCchHHHHH
Confidence 45555543 34444554 456899999999999875
No 279
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=30.37 E-value=19 Score=34.83 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=15.5
Q ss_pred CCCeeEEeeccCCCCccccc
Q 003179 76 GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 76 GyN~TIfAYGQTGSGKTyTM 95 (842)
.-...|.-.|++|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456778899999999764
No 280
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=30.27 E-value=13 Score=39.92 Aligned_cols=19 Identities=42% Similarity=0.466 Sum_probs=14.9
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM 95 (842)
.|- .+.-.|+||||||+++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 555 4566799999999876
No 281
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=30.22 E-value=13 Score=34.97 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=13.5
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5677899999999765
No 282
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.06 E-value=98 Score=28.83 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=29.5
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 003179 728 DLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT 772 (842)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (842)
++...+.-+-+.+-...+|+-|++-|+-.+.+|-..+.+.-+...
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444455556666667778888888888888888887776655544
No 283
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=29.97 E-value=29 Score=41.87 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.0
Q ss_pred HHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
...+++ ++.|.||+.-|.+|||||.+.
T Consensus 162 Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 162 AYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 333433 799999999999999999875
No 284
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=29.90 E-value=31 Score=36.29 Aligned_cols=37 Identities=30% Similarity=0.245 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHh--cCCCeeEEeeccCCCCccccc
Q 003179 59 ARVYELLTKDIIHAAV--EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 59 eeVYe~v~~pLV~svL--~GyN~TIfAYGQTGSGKTyTM 95 (842)
..++..++..+..... .+-...|.-.|++|||||+..
T Consensus 10 ~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 3455555444443222 234456777899999999865
No 285
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.79 E-value=1.5e+02 Score=26.10 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=26.6
Q ss_pred hhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 003179 722 YHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVS 765 (842)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (842)
+..|..+-....+..+..+...+.|.++..-|++|+.+...++.
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445555666777788888888887776655554
No 286
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=29.66 E-value=29 Score=41.88 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 61 VYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 61 VYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
||.-. ......++ ++.|.||+.-|.+|||||.+.
T Consensus 123 ifaiA-~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 123 VFAIA-DKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HHHHH-HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHH-HHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 55432 33333433 699999999999999999885
No 287
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=29.62 E-value=15 Score=34.46 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.6
Q ss_pred eeEEeeccCCCCcccc
Q 003179 79 GTVFAYGQTSSGKTFT 94 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyT 94 (842)
..|+-.|..|||||+.
T Consensus 4 ~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588899999999975
No 288
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=29.58 E-value=14 Score=36.00 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.1
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.+.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 289
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.49 E-value=77 Score=29.67 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=27.0
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccc
Q 003179 728 DLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTM 773 (842)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (842)
++...+.-+-+.+-...+|+-|++-++-.+.+|-..+.+.-+...+
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444455556666677788888888888888887777766655543
No 290
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=29.46 E-value=21 Score=39.31 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=13.8
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688899999999884
No 291
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=28.78 E-value=35 Score=30.70 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=39.7
Q ss_pred HhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHH
Q 003179 709 EKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRL 752 (842)
Q Consensus 709 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (842)
.|+++|+-.|.|=...+|++...-.|++.-.||-++++|+++.-
T Consensus 40 ~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~sLKEL~~s~e~d~kd 83 (91)
T 4aj5_A 40 NKIGDEIIVINELLNKLELEIQYQEQTNNSLKELCESLEEDYKD 83 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999987653
No 292
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.76 E-value=14 Score=38.93 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..|.-.|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356778999999999974
No 293
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=28.69 E-value=21 Score=39.67 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=13.4
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4677899999999983
No 294
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=28.64 E-value=3e+02 Score=26.22 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHH-hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHH
Q 003179 707 WKE-KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQ 754 (842)
Q Consensus 707 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (842)
|.+ .|..+-..|+.++..+..++...+..++....++..|+.+-+-|+
T Consensus 22 l~n~~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~ 70 (155)
T 2oto_A 22 IQNIRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLE 70 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 443 555555556666665555555555555555555555544444333
No 295
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=28.61 E-value=29 Score=42.99 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 61 VYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 61 VYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
||.. +.....+++ ++.|.||+.-|.+|||||.+.
T Consensus 155 ifai-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 155 IFAI-SDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HHHH-HHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred HHHH-HHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 5542 333334443 799999999999999999874
No 296
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=28.59 E-value=1.8e+02 Score=25.91 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhhhHHHHHHHhcchhhhhhhhcchh
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESVVSSKD 600 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (842)
+-++.|+.+.+++.++..+++.+....-.-..+...+|..|++-+..+..--...-+.+.....
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~ 72 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999988888888888888888888887776665555554444433
No 297
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.44 E-value=1.7e+02 Score=26.32 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=35.0
Q ss_pred hhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHh
Q 003179 715 LNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKN 794 (842)
Q Consensus 715 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (842)
...|+.|.+.|.-+...-..-.+........+|....-+-+|-.||-.++...-..+.-+..+=..+...|.....+..+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~ 83 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666555433333333333333333333333333444444444332222221111112233334444444555
Q ss_pred HHHHHHH
Q 003179 795 LEEEIKQ 801 (842)
Q Consensus 795 ~~~~~~~ 801 (842)
.+.++..
T Consensus 84 aE~ev~~ 90 (101)
T 3u1c_A 84 AESEVAS 90 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=28.28 E-value=16 Score=33.92 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|.-.|+.|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999864
No 299
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=28.19 E-value=17 Score=35.10 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.8
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999764
No 300
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.19 E-value=2.1e+02 Score=22.19 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 375 RNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQ 414 (842)
Q Consensus 375 r~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~ 414 (842)
.++....+.+.+.+....--.+.....++..+..++++|+
T Consensus 9 enevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 3344444445555554444444444455555555555553
No 301
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=28.09 E-value=3e+02 Score=24.04 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003179 341 DAALLKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNH 416 (842)
Q Consensus 341 ~~~li~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~elee~~~~~~e~e~~~~e~q~~i~~l 416 (842)
....+..+..++..|+..+... +.....+...+.+...++..|..++.+.......+...-.++..++.++
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~-----e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKT-----ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888642 2223334444444445555555444333333333333344444444444
No 302
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=28.01 E-value=32 Score=42.64 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 61 VYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 61 VYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
||.- +.....+++ ++.|.||+.-|.+|||||.+.
T Consensus 129 ifai-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 129 VYAV-TEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HHHH-HHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred HHHH-hHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 5542 333333433 799999999999999999875
No 303
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=27.92 E-value=12 Score=37.17 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.5
Q ss_pred eEEeeccCCCCccccccC
Q 003179 80 TVFAYGQTSSGKTFTMNG 97 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~G 97 (842)
.++-||+.|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 678899999999988764
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=27.79 E-value=18 Score=33.32 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=13.3
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999753
No 305
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=27.71 E-value=15 Score=36.53 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=12.9
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.+.-.|++|||||..+
T Consensus 25 ~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLI 40 (218)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 306
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=27.49 E-value=33 Score=41.44 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.4
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM 95 (842)
++.|.||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999864
No 307
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=27.39 E-value=30 Score=42.02 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=21.9
Q ss_pred HHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
...+++ ++.|.||+.-|.+|||||.+.
T Consensus 159 Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 159 AYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 333433 699999999999999999874
No 308
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=27.36 E-value=43 Score=35.25 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.0
Q ss_pred eEEeeccCCCCcccccc
Q 003179 80 TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~ 96 (842)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999864
No 309
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=27.34 E-value=20 Score=39.54 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=15.5
Q ss_pred hcCCCeeEEeeccCCCCccccc
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM 95 (842)
++|.| ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 45554 578899999999984
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=27.21 E-value=17 Score=37.11 Aligned_cols=15 Identities=47% Similarity=0.536 Sum_probs=12.8
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 477899999999974
No 311
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=27.09 E-value=34 Score=41.27 Aligned_cols=34 Identities=15% Similarity=0.414 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 61 VYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 61 VYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
||.. +......++ ++.|-||+.-|.+|||||.+.
T Consensus 154 ifai-A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 154 IFSI-SDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HHHH-HHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hhHH-HHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 4542 333344443 799999999999999999875
No 312
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=27.04 E-value=23 Score=32.69 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=19.8
Q ss_pred HHHHHhc-CCCeeEEeeccCCCCccccc
Q 003179 69 IIHAAVE-GFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 69 LV~svL~-GyN~TIfAYGQTGSGKTyTM 95 (842)
++..++. .....|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3444444 45678999999999999765
No 313
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=27.01 E-value=19 Score=33.88 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.3
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999865
No 314
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=26.78 E-value=2.4e+02 Score=27.51 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=45.0
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHH
Q 003179 726 EKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEI 799 (842)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (842)
+.++..-...|.++..|++--||.+..|..+.|.|-+++.....+...+...=...+.+|+.=...-..|+.||
T Consensus 76 EeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 33444445567777778888888888888888887777765555555444444455555544444444444444
No 315
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=26.78 E-value=16 Score=37.33 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=17.3
Q ss_pred hcCCCeeEEeeccCCCCccccc
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM 95 (842)
-.|+...|+..|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 3688999999999999999754
No 316
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=26.71 E-value=27 Score=43.29 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=17.7
Q ss_pred HHHHHhcCCCeeEEeeccCCCCccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTF 93 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTy 93 (842)
++..+++|.| +++.|+||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4455677866 5788999999994
No 317
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=26.63 E-value=16 Score=35.98 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.+.-.|++|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4667899999999986
No 318
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=26.54 E-value=18 Score=33.86 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|+-.|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35778899999999864
No 319
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=26.44 E-value=1.9e+02 Score=25.41 Aligned_cols=31 Identities=10% Similarity=0.204 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 384 EREKLQLELEEERRSRKERDQCVREQQMRLQ 414 (842)
Q Consensus 384 e~e~l~~elee~~~~~~e~e~~~~e~q~~i~ 414 (842)
+...+.+.+++.--.+.+++..+.-++..|.
T Consensus 50 d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 50 TLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555544443
No 320
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=26.31 E-value=3.4e+02 Score=26.10 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHHHHHHHH
Q 003179 740 KEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEIKQFSVA 805 (842)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (842)
-+|.+.||.++...+.--..-..+.-+...+|.++..+=+.+-..+..--.+-++|+++++....-
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666777777777776666666666666666777888888766543
No 321
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=26.27 E-value=29 Score=39.78 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=14.2
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|.-.|++|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5778899999999987
No 322
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=26.01 E-value=18 Score=34.12 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999853
No 323
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=25.98 E-value=29 Score=39.45 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 67 KDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 67 ~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..+...+..|.++ ++-.+||||||.+.
T Consensus 13 ~~v~~~l~~~~~~--~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 13 DKVIEGLRNNFLV--ALNAPTGSGKTLFS 39 (551)
T ss_dssp HHHHHHHHTTCEE--EEECCTTSSHHHHH
T ss_pred HHHHHHHHcCCcE--EEECCCCccHHHHH
Confidence 3344556678654 55568999998875
No 324
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=25.95 E-value=40 Score=38.51 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
...++-||++|+|||+++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346889999999999875
No 325
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=25.90 E-value=39 Score=39.61 Aligned_cols=86 Identities=19% Similarity=0.352 Sum_probs=51.8
Q ss_pred ceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccccCCC---CCCChH----HhHHHHHHHHHH
Q 003179 45 SYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSA---DNPGVI----SLGVKDIFDAIQ 117 (842)
Q Consensus 45 sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM~Gs~---~~~GII----PRal~dLF~~I~ 117 (842)
.|....=|.|...|..-+.. ++..+-.|... ....|.|||||||||-.-. ..|-|| ......|+..+.
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 36666668899999888765 45555666533 3456999999999996411 112111 133455555555
Q ss_pred hc-cccceEEEEeeeeeec
Q 003179 118 MM-SNREFLVRVSYMEIYN 135 (842)
Q Consensus 118 ~~-~~~ef~V~VSylEIYN 135 (842)
.. ++..+....||+--|.
T Consensus 79 ~~~~~~~v~~fps~yd~~~ 97 (661)
T 2d7d_A 79 EFFPNNAVEYFVSYYDYYQ 97 (661)
T ss_dssp HHCTTSEEEEECCCEEEEE
T ss_pred HHcCCCcEEEccccccccC
Confidence 43 3445666777754443
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=25.78 E-value=19 Score=33.78 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|..|||||+.
T Consensus 5 ~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 327
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=25.66 E-value=30 Score=36.99 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=22.3
Q ss_pred HHHHHHhc-CC--CeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVE-GF--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~-Gy--N~TIfAYGQTGSGKTyTM~ 96 (842)
+-++.++. |+ ...+.-||++|||||..+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 55788885 44 3468899999999998753
No 328
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=25.64 E-value=22 Score=42.53 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHhcCCCeeEEeeccCCCCcccc
Q 003179 70 IHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 70 V~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
+..++.|. ..++..|+||||||..
T Consensus 102 i~~~l~~~-~~vii~gpTGSGKTtl 125 (773)
T 2xau_A 102 FLKLYQNN-QIMVFVGETGSGKTTQ 125 (773)
T ss_dssp HHHHHHHC-SEEEEECCTTSSHHHH
T ss_pred HHHHHhCC-CeEEEECCCCCCHHHH
Confidence 33444442 3467789999999993
No 329
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=25.40 E-value=15 Score=42.87 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 56 CSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 56 asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.-|.+++.. +++|.| ++..|+||||||...
T Consensus 28 ~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 28 PPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCHHHHHH--------HTTCSC--EEEECSSHHHHHHHH
T ss_pred HHHHHHHHH--------HhCCCc--EEEEcCCccHHHHHH
Confidence 457766654 345655 577889999999864
No 330
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=25.39 E-value=45 Score=41.79 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
.++...-.|...-++..|+||||||.+
T Consensus 614 ~il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 614 AVLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 344444457766789999999999975
No 331
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=25.31 E-value=20 Score=38.78 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.8
Q ss_pred HHhcCCCeeEEeeccCCCCccccc
Q 003179 72 AAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 72 svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 357899999999999999999754
No 332
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=25.26 E-value=15 Score=42.88 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=15.4
Q ss_pred hcCCCeeEEeeccCCCCccccc
Q 003179 74 VEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 74 L~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+|. .++..|+||||||...
T Consensus 37 ~~~~--~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 37 LEGK--NALISIPTASGKTLIA 56 (720)
T ss_dssp GGTC--EEEEECCGGGCHHHHH
T ss_pred cCCC--cEEEEcCCccHHHHHH
Confidence 4554 4788899999999764
No 333
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=25.26 E-value=43 Score=36.81 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.8
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM 95 (842)
.|.-..|+-+|+.|+|||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 576677899999999999865
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=25.23 E-value=21 Score=33.53 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|..|||||+.
T Consensus 6 ~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 335
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=25.20 E-value=56 Score=36.78 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.3
Q ss_pred CeeEEeeccCCCCcccccc
Q 003179 78 NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM~ 96 (842)
...|+..|.+|+|||+|..
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4578889999999999975
No 336
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=25.17 E-value=24 Score=33.49 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=16.1
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 003179 75 EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 75 ~GyN~TIfAYGQTGSGKTyTM 95 (842)
.+..-.|.-.|++|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 345567888999999999753
No 337
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.09 E-value=87 Score=34.70 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=39.8
Q ss_pred hhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccc
Q 003179 714 ELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMV 774 (842)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (842)
++..++++...|++++..-.+.++++++++..|...+.....+|..|.+.+.+-..++.++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 4555666666666666666666666666777776666666677777777777666555544
No 338
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=25.08 E-value=3.6e+02 Score=26.00 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 345 LKRQKLEIEELRRKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLELE 393 (842)
Q Consensus 345 i~~lk~EI~~Lr~~L~~~~~~~~e~ei~kLr~~~~~~e~e~e~l~~ele 393 (842)
+..|+.-|+.||+.....+.......+..+..++.....+...|..-+.
T Consensus 30 VDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 30 VDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777776555444444444444444444444444444333
No 339
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=25.05 E-value=39 Score=42.17 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHh-cCCCeeEEeeccCCCCccccc
Q 003179 61 VYELLTKDIIHAAV-EGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 61 VYe~v~~pLV~svL-~GyN~TIfAYGQTGSGKTyTM 95 (842)
||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 127 Ifai-A~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 127 VFAI-ADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HHHH-HHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHH-HHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 5533 333444444 799999999999999999875
No 340
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=25.03 E-value=20 Score=34.78 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=13.0
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+-.|++|||||+.+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999754
No 341
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=24.90 E-value=25 Score=43.47 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=17.1
Q ss_pred HHHhcCCCeeEEeeccCCCCccccc
Q 003179 71 HAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 71 ~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..++.|.| ++..++||||||...
T Consensus 96 ~~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 96 SCIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHHcCCC--EEEECCCCCChHHHH
Confidence 33456665 688899999999863
No 342
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=24.55 E-value=62 Score=36.09 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=15.0
Q ss_pred eEEeeccCCCCcccccc
Q 003179 80 TVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM~ 96 (842)
.|...|++|+|||++..
T Consensus 101 vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CEEEECCSSSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67889999999999975
No 343
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=24.36 E-value=20 Score=33.50 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=12.9
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|..|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=24.35 E-value=21 Score=34.14 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=13.3
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 488899999999975
No 345
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=24.27 E-value=37 Score=37.29 Aligned_cols=17 Identities=29% Similarity=0.173 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|.-+|++|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36788999999999865
No 346
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=24.22 E-value=20 Score=42.41 Aligned_cols=14 Identities=50% Similarity=0.861 Sum_probs=12.7
Q ss_pred eEEeeccCCCCccc
Q 003179 80 TVFAYGQTSSGKTF 93 (842)
Q Consensus 80 TIfAYGQTGSGKTy 93 (842)
.|+..|+||||||+
T Consensus 157 ~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 157 IIFHSGPTNSGKTY 170 (677)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 57889999999998
No 347
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=24.21 E-value=1e+02 Score=26.46 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=37.0
Q ss_pred hhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 003179 720 EKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT 772 (842)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (842)
.+-|.|-..+..+||.+ |+||+.|..=-+--|+||+=|..++-++.+.+-
T Consensus 15 ~EN~~LreAlkqsNq~m---keR~eeL~~wqekQkeErefl~~kf~EAr~lv~ 64 (70)
T 3brv_B 15 EENQELRDAIRQSNQIL---RERCEELLHFQASQREEKEFLMCKFQEARKLVE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666654 569999988888889999999999988765543
No 348
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=24.19 E-value=33 Score=38.94 Aligned_cols=35 Identities=20% Similarity=0.075 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 55 TCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 55 ~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
..-|.++-.. +...+..|.++ ++-.+||+|||.+.
T Consensus 9 r~~Q~~~~~~----v~~~~~~~~~~--~~~a~TGtGKT~~~ 43 (540)
T 2vl7_A 9 RQWQAEKLGE----AINALKHGKTL--LLNAKPGLGKTVFV 43 (540)
T ss_dssp CCHHHHHHHH----HHHHHHTTCEE--EEECCTTSCHHHHH
T ss_pred CHHHHHHHHH----HHHHHHcCCCE--EEEcCCCCcHHHHH
Confidence 3345555443 34455677654 55568999999764
No 349
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.16 E-value=1.7e+02 Score=26.07 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=49.1
Q ss_pred HHhhhhhhhhhHhhhhchhhhhhhhhhhHH-----hhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 003179 708 KEKLSSELNTIKEKYHGLEKDLDLNNKFLE-----TSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLT 772 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (842)
++.|..++..+++++..|++++..-...|. .--.+|-.+-.++.-+|+=-..|+.+++...+-..
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv~~ 72 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKCTS 72 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcH
Confidence 357888889999999999988866544333 23467888888888888888889998887766443
No 350
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=24.16 E-value=21 Score=33.04 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.9
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 4 PIFMVGARGCGMTTV 18 (173)
T ss_dssp CEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478889999999975
No 351
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=24.16 E-value=4.3e+02 Score=28.86 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=23.2
Q ss_pred Hhhhhchhhhhhhhh-hhHHhhHHHHHHHHHHHHHHHH
Q 003179 719 KEKYHGLEKDLDLNN-KFLETSKEMYDSLEREFRLLQE 755 (842)
Q Consensus 719 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 755 (842)
.+....+++++...- +.|+.+|..|+...++.+..+.
T Consensus 118 ~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~ 155 (406)
T 4dyl_A 118 SEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKR 155 (406)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666655 6777777777777777666554
No 352
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=24.11 E-value=33 Score=39.51 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=25.9
Q ss_pred eeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 46 YAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 46 F~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
-.|+.+++. ..+. ..+-..+-.| ..++-+|++|+|||+.+
T Consensus 38 ~~l~~i~G~----~~~l----~~l~~~i~~g--~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 38 KLIDQVIGQ----EHAV----EVIKTAANQK--RHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp SHHHHCCSC----HHHH----HHHHHHHHTT--CCEEEECCTTSSHHHHH
T ss_pred cccceEECc----hhhH----hhccccccCC--CEEEEEeCCCCCHHHHH
Confidence 356666653 3333 3334444566 36788999999999876
No 353
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=24.07 E-value=19 Score=35.84 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.++-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4678899999999975
No 354
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=24.01 E-value=24 Score=41.14 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..++..|+||||||...
T Consensus 47 ~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CcEEEEcCCCCcHHHHH
Confidence 44678899999999874
No 355
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=23.97 E-value=21 Score=35.76 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46888899999999865
No 356
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=23.95 E-value=22 Score=41.91 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=16.8
Q ss_pred CCeeEEeeccCCCCcccccc
Q 003179 77 FNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~ 96 (842)
.++.++..|..|||||+||.
T Consensus 23 ~~g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 23 TEGPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH
Confidence 45677888999999999975
No 357
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=23.88 E-value=24 Score=33.03 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=9.7
Q ss_pred eeEEeeccCCCCcccc
Q 003179 79 GTVFAYGQTSSGKTFT 94 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyT 94 (842)
..|+-.|..|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 6 PIIWINGPFGVGKTHT 21 (183)
T ss_dssp CEEEEECCC----CHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588899999999985
No 358
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=23.70 E-value=28 Score=43.23 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=13.0
Q ss_pred EEeeccCCCCcccccc
Q 003179 81 VFAYGQTSSGKTFTMN 96 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~ 96 (842)
.+...+||||||.||+
T Consensus 303 gli~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSF 318 (1038)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEEecCCCCHHHHHH
Confidence 3556699999999985
No 359
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=23.65 E-value=25 Score=37.45 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
..|+-.|++|+|||+|+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 367888999999999874
No 360
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=23.61 E-value=57 Score=31.06 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..+.-.|+.|||||..+
T Consensus 34 e~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35677899999999876
No 361
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=23.56 E-value=20 Score=34.52 Aligned_cols=16 Identities=38% Similarity=0.301 Sum_probs=13.1
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|--.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 362
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=23.28 E-value=35 Score=36.72 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=21.8
Q ss_pred HHHHHHHhcC---CCeeEEeeccCCCCccccc
Q 003179 67 KDIIHAAVEG---FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 67 ~pLV~svL~G---yN~TIfAYGQTGSGKTyTM 95 (842)
-+-++.++.| ....+.-+|++|||||..+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3557788754 3456888999999999865
No 363
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=23.27 E-value=36 Score=35.57 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=22.6
Q ss_pred HHHHHHHhc-CC--CeeEEeeccCCCCcccccc
Q 003179 67 KDIIHAAVE-GF--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 67 ~pLV~svL~-Gy--N~TIfAYGQTGSGKTyTM~ 96 (842)
-+-++.++. |+ ...+.-||++|||||....
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 366788885 43 3568999999999998653
No 364
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=23.16 E-value=1.6e+02 Score=29.24 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=36.5
Q ss_pred HHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 003179 708 KEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVS 765 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (842)
-++|+++|+.|.++...|+.+|..-....-..-.+..+|--++.-|...||..+..+.
T Consensus 98 ~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~ 155 (170)
T 3l4q_C 98 SERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLT 155 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3499999999999999988776543332222333444555555555666666655543
No 365
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.96 E-value=4.1e+02 Score=24.14 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 003179 740 KEMYDSLEREFRLL 753 (842)
Q Consensus 740 ~~~~~~~~~~~~~~ 753 (842)
+.+....|++..-+
T Consensus 39 ~~~R~~aE~~~~~i 52 (97)
T 2eqb_B 39 NELRTKAEEEADKL 52 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 366
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=22.76 E-value=31 Score=36.36 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHhc-CC--CeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVE-GF--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~-Gy--N~TIfAYGQTGSGKTyTM~ 96 (842)
+-++.++. |+ ...+.-||++|||||..+.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHH
Confidence 56788885 33 3468899999999998653
No 367
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=22.67 E-value=23 Score=34.21 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=13.7
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|.-.|+.|||||+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667899999999864
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=22.52 E-value=23 Score=33.56 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|..|||||+.
T Consensus 14 ~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQ 28 (199)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588899999999975
No 369
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=22.50 E-value=24 Score=33.28 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.8
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477889999999975
No 370
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=22.47 E-value=32 Score=36.41 Aligned_cols=29 Identities=7% Similarity=-0.099 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyTM~ 96 (842)
.+...+-.|..-.++-||+.|+|||.+..
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSL 36 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHH
Confidence 34444456765678889999999988653
No 371
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=22.33 E-value=24 Score=33.06 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=12.7
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|+.|||||+.
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 477789999999975
No 372
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=22.16 E-value=27 Score=43.54 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=18.0
Q ss_pred HHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 69 IIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 69 LV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
++..++.|.+ ++..|+||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 3445577765 58889999999975
No 373
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=22.04 E-value=2e+02 Score=27.97 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=24.3
Q ss_pred hhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccchhhHHhHhhhhhHHHHHHHhHHHHH
Q 003179 725 LEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTLTMVTDQKENVLKDYNTEVEKKKNLEEEI 799 (842)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (842)
|++++......|+.|++-...++.++.-|+.+...|-....+-...-.+--.-+.-+-.||+.-+.-.|.++.++
T Consensus 64 le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKqlEadl 138 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEKDL 138 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------------------------
T ss_pred hHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666655555554433332222222222344556677777777777766553
No 374
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=21.92 E-value=49 Score=34.62 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.5
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
...|--.|++|||||+++
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 346667799999999875
No 375
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=21.89 E-value=4.3e+02 Score=26.19 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003179 741 EMYDSLEREFRLLQEER 757 (842)
Q Consensus 741 ~~~~~~~~~~~~~~~~~ 757 (842)
++|..|+.....|..|.
T Consensus 55 ~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDY 71 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 376
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=21.79 E-value=25 Score=33.76 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.5
Q ss_pred CeeEEeeccCCCCccccc
Q 003179 78 NGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 78 N~TIfAYGQTGSGKTyTM 95 (842)
...|+-.|..|||||+..
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346888999999999753
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=21.78 E-value=25 Score=32.38 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.8
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|..|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477889999999975
No 378
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=21.60 E-value=24 Score=35.69 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.2
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.+.-.|++|||||..|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999865
No 379
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=21.57 E-value=25 Score=35.35 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=13.2
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999875
No 380
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=21.54 E-value=23 Score=31.62 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=13.5
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999763
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=21.46 E-value=25 Score=32.90 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.0
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|..|||||+.
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999985
No 382
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=21.39 E-value=37 Score=42.34 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCeeEEeeccCCCCcccc
Q 003179 68 DIIHAAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 68 pLV~svL~GyN~TIfAYGQTGSGKTyT 94 (842)
..+..++.|.| +++.++||||||..
T Consensus 85 ~ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 85 LWAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 34556677876 57888999999984
No 383
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=21.26 E-value=24 Score=33.05 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=15.7
Q ss_pred CCeeEEeeccCCCCccccc
Q 003179 77 FNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM 95 (842)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457999999999999764
No 384
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=21.25 E-value=26 Score=35.94 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=19.8
Q ss_pred HHHHHhcCCC--eeEEeeccCCCCcccccc
Q 003179 69 IIHAAVEGFN--GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 69 LV~svL~GyN--~TIfAYGQTGSGKTyTM~ 96 (842)
.++.+.-|+. ..+.-.|++|+|||..+.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence 3555555553 357788999999998763
No 385
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=21.09 E-value=26 Score=33.52 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
-.|+-.|..|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788899999999753
No 386
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=20.99 E-value=28 Score=35.05 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=14.6
Q ss_pred HHhcCCCeeEEeeccCCCCcccc
Q 003179 72 AAVEGFNGTVFAYGQTSSGKTFT 94 (842)
Q Consensus 72 svL~GyN~TIfAYGQTGSGKTyT 94 (842)
......---.|-||+.|||||.-
T Consensus 14 ~~~~~~g~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 14 RGSKTRGQIQVILGPMFSGKSTE 36 (195)
T ss_dssp -----CCEEEEEEECTTSCHHHH
T ss_pred cCCCCceEEEEEECCCCCcHHHH
Confidence 33334445789999999999943
No 387
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=20.95 E-value=32 Score=37.11 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=13.7
Q ss_pred eeEEeeccCCCCcccc
Q 003179 79 GTVFAYGQTSSGKTFT 94 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyT 94 (842)
-.|+-.|+||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4688999999999974
No 388
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=20.92 E-value=25 Score=34.57 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
.|+-.|.+|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999854
No 389
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=20.91 E-value=26 Score=33.09 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.5
Q ss_pred eeEEeeccCCCCcccc
Q 003179 79 GTVFAYGQTSSGKTFT 94 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyT 94 (842)
-.|+-.|..|||||+.
T Consensus 10 ~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3578889999999985
No 390
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.69 E-value=2.4e+02 Score=24.41 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHH-Hhhhhh
Q 003179 537 RDVQKLKRQLENVTEEKNEFQRKYSEEK-ILNARL 570 (842)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 570 (842)
+|+++|+.+-...+....+++..|..++ .++..+
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i 35 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAVEAANYQDTI 35 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999998876 555554
No 391
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=20.56 E-value=27 Score=34.09 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.1
Q ss_pred eEEeeccCCCCcccc
Q 003179 80 TVFAYGQTSSGKTFT 94 (842)
Q Consensus 80 TIfAYGQTGSGKTyT 94 (842)
.|+-.|..|||||+.
T Consensus 6 ~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQ 20 (220)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 392
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=20.54 E-value=36 Score=40.28 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCcccccc
Q 003179 79 GTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM~ 96 (842)
-.++..|+||||||+.+.
T Consensus 233 ~~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEEECCTTSCTTTHHH
T ss_pred CeEEEEeCCchhHHHHHH
Confidence 346888999999997653
No 393
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=20.50 E-value=53 Score=34.28 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=33.3
Q ss_pred ccchhhHHHHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHH
Q 003179 700 KEEESTCWKEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLE 747 (842)
Q Consensus 700 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (842)
...+-=-|...|.+++.++..+|+.+|+-+...+.+|++.-+.-+.++
T Consensus 151 ~eIdLFewA~~L~q~i~~ln~k~~~~E~si~~L~~qLeElv~~k~~~d 198 (246)
T 1z56_A 151 GEIDLFEMADKLYKDICCVNDSYRNIKESDSSNRNRVEQLARERELLD 198 (246)
T ss_dssp --------CTTSGGGTTHHHHHHHHTTTTTTHHHHHHHHTTTTHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555677789999999999999999999999999988655444443
No 394
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=20.50 E-value=27 Score=33.74 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.4
Q ss_pred EEeeccCCCCccccc
Q 003179 81 VFAYGQTSSGKTFTM 95 (842)
Q Consensus 81 IfAYGQTGSGKTyTM 95 (842)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999753
No 395
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=20.40 E-value=30 Score=34.08 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.2
Q ss_pred eEEeeccCCCCccccc
Q 003179 80 TVFAYGQTSSGKTFTM 95 (842)
Q Consensus 80 TIfAYGQTGSGKTyTM 95 (842)
..+-||++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4567899999999765
No 396
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=20.36 E-value=40 Score=39.24 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=22.7
Q ss_pred eCCCCChHHHHHHHHHHHHHHHhcCCCeeEEeeccCCCCccccc
Q 003179 52 FEETCSNARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 52 F~~~asQeeVYe~v~~pLV~svL~GyN~TIfAYGQTGSGKTyTM 95 (842)
|.+-..|.++-..+ ...+.+|.+ +++-.+||||||.+.
T Consensus 2 ~~~R~~Q~~~~~~v----~~~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDFL----RSSLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHHH----HHHHHHSSE--EEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHH----HHHHHcCCC--EEEECCCCCCHHHHH
Confidence 33444565555544 344456655 577779999999874
No 397
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=20.33 E-value=1.1e+02 Score=26.23 Aligned_cols=46 Identities=28% Similarity=0.365 Sum_probs=30.9
Q ss_pred HHhhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHHHHHHHHHhHHH
Q 003179 708 KEKLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSL 760 (842)
Q Consensus 708 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (842)
+|-|.+.|+.+ .|.+.|-+.+|..+..--+.|.....+||+|-..|
T Consensus 17 ~eel~~~L~~~-------~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 17 KEELVQKLSST-------TKSADHLNGLLRETEATNAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp -------------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 34455555554 88999999999999999999999999999986554
No 398
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=20.27 E-value=38 Score=36.55 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=21.4
Q ss_pred HHHHHHhc--CC--CeeEEeeccCCCCcccccc
Q 003179 68 DIIHAAVE--GF--NGTVFAYGQTSSGKTFTMN 96 (842)
Q Consensus 68 pLV~svL~--Gy--N~TIfAYGQTGSGKTyTM~ 96 (842)
+-++.++. |+ ...+.-||++|||||+.+.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHH
Confidence 45677776 43 3468889999999998753
No 399
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=20.14 E-value=30 Score=35.22 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCccccc
Q 003179 79 GTVFAYGQTSSGKTFTM 95 (842)
Q Consensus 79 ~TIfAYGQTGSGKTyTM 95 (842)
..|+-.|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 46888999999999853
No 400
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.03 E-value=1e+02 Score=31.98 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=33.5
Q ss_pred hhhhhhhhhHhhhhchhhhhhhhhhhHHhhHHHHHHHHHH
Q 003179 710 KLSSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLERE 749 (842)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (842)
.|.+.|+.+.++..++-+.+..++|++...+|+|+.+--|
T Consensus 182 ~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 182 DLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 5688888888888888889999999999999999876433
Done!