Your job contains 1 sequence.
>003180
MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL
RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES
PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI
LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS
RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA
IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK
GA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003180
(842 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 4062 0. 1
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 3092 0. 1
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 2991 8.3e-312 1
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 2991 8.3e-312 1
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 2991 8.3e-312 1
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 2985 3.6e-311 1
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 2985 3.6e-311 1
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 2985 3.6e-311 1
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 2985 3.6e-311 1
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 2981 9.5e-311 1
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 2977 2.5e-310 1
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 2968 2.3e-309 1
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 2915 9.4e-304 1
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 1877 8.1e-298 2
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 1930 2.5e-296 2
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 2835 2.8e-295 1
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 1898 1.1e-291 2
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 1898 1.1e-291 2
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 1858 6.3e-289 2
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 2715 1.5e-282 1
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 1511 1.6e-263 2
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 1511 1.6e-263 2
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 1534 2.1e-157 1
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 1525 1.8e-156 1
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 1522 3.8e-156 1
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 1522 3.8e-156 1
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 1522 3.8e-156 1
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 1519 8.0e-156 1
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 1519 8.0e-156 1
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 1515 2.1e-155 1
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 1514 2.7e-155 1
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 1489 1.2e-152 1
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 1479 1.4e-151 1
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 1167 2.2e-150 2
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 1464 5.4e-150 1
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 1428 3.5e-146 1
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 750 7.7e-146 2
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 750 7.7e-146 2
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 1372 3.0e-140 1
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 996 1.7e-135 2
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 830 1.4e-97 2
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 950 1.6e-95 1
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 820 7.8e-95 2
UNIPROTKB|F5H643 - symbol:POLR1B "DNA-directed RNA polyme... 815 4.3e-94 2
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 815 4.3e-94 2
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 815 1.8e-93 2
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 780 3.7e-93 3
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 799 9.2e-93 2
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 802 9.6e-93 2
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 797 1.6e-92 2
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 797 1.6e-92 2
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 804 9.8e-92 2
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 799 1.0e-91 2
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 802 3.6e-91 2
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 766 5.3e-91 3
UNIPROTKB|I3LGN1 - symbol:LOC100737037 "DNA-directed RNA ... 907 5.7e-91 1
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 775 1.7e-90 3
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 790 1.5e-89 2
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 764 5.0e-86 2
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 746 7.8e-84 2
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 815 1.5e-83 2
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 738 1.7e-83 3
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 520 8.7e-79 3
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 520 8.7e-79 3
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 486 7.1e-58 3
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 451 8.6e-50 3
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 280 5.0e-47 4
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 222 7.4e-45 5
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 195 6.3e-44 5
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 249 1.1e-43 4
UNIPROTKB|F8VRE2 - symbol:POLR3B "DNA-directed RNA polyme... 468 1.7e-43 2
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 256 3.4e-43 4
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 197 8.2e-43 5
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 198 4.0e-42 5
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 219 7.2e-42 5
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 192 3.3e-40 5
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 198 4.3e-40 5
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 199 5.1e-40 5
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 191 1.1e-39 5
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 189 2.2e-39 5
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 189 2.2e-39 5
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 181 1.3e-38 5
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 307 2.5e-35 2
UNIPROTKB|I3L6M3 - symbol:LOC100737037 "Uncharacterized p... 388 4.9e-35 1
UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera... 301 3.5e-30 3
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera... 301 3.5e-30 3
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera... 301 3.5e-30 3
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera... 301 3.5e-30 3
UNIPROTKB|H7C0D9 - symbol:POLR1B "DNA-directed RNA polyme... 283 9.8e-24 1
UNIPROTKB|P21421 - symbol:rpoB "DNA-directed RNA polymera... 251 2.7e-17 4
UNIPROTKB|I3LR52 - symbol:I3LR52 "Uncharacterized protein... 151 1.4e-09 1
UNIPROTKB|F8VRU2 - symbol:POLR3B "DNA-directed RNA polyme... 136 5.4e-08 1
UNIPROTKB|F8VRS3 - symbol:POLR3B "DNA-directed RNA polyme... 115 9.5e-06 1
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 4062 (1435.0 bits), Expect = 0., P = 0.
Identities = 770/835 (92%), Positives = 790/835 (94%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG G+ CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 352 MLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 411
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
LFRKLTRDVR+YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 412 LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 471
Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 472 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531
Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTX 240
LMVYITVGSAAYPILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKT
Sbjct: 532 LMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTL 591
Query: 241 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKKRDI ALQQRES
Sbjct: 592 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRES 651
Query: 301 PEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLI 360
E+ GWH LVAKGF +DLVQARL PEEAY + YTHCEIHPSLI
Sbjct: 652 AEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLI 711
Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 712 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771
Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772 MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 831
Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
LVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+S
Sbjct: 832 LVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSS 891
Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 892 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 951
Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
GMTYTQEDMPWT+EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 952 GMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1011
Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
TVDNISKALHKCGYQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1012 TVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1071
Query: 721 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1072 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIA 1131
Query: 781 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSK 835
IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK K +K
Sbjct: 1132 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKH-LKSAK 1185
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 3092 (1093.5 bits), Expect = 0., P = 0.
Identities = 579/831 (69%), Positives = 680/831 (81%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHV +F ETKKA+YFGYI HRLLL +L RR DDRDH+ NKRLDLAGPLLG LFR
Sbjct: 345 MLPHVSVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQ 404
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
LF+KLT+DVR Y+Q+C+D K+ A+K+KTITSGLKYSLATGNWG + + GT++GV+
Sbjct: 405 LFKKLTKDVRLYLQRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVA 464
Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
QVLNRLT+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA
Sbjct: 465 QVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLA 524
Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISP-AVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+M YI+VGSA+ PILEFLEEW TEN EEIS + I ATKIFVNG WVGIH P+ L+ T
Sbjct: 525 MMSYISVGSASQPILEFLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLST 584
Query: 240 XXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
DV+ EV VVRDIR KELR+YTD GRC RPLF+V+ ++ IKK+ I L +
Sbjct: 585 LRLLRRCGDVSVEVSVVRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINND 644
Query: 300 SPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSL 359
+ W DL+++G DLV P E TYTHCEIHPS+
Sbjct: 645 EYK---WQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPM---PNEQIVHTYTHCEIHPSM 698
Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
ILG+C SIIPFPDHNQSPRNTYQ+AMGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR
Sbjct: 699 ILGICCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTR 758
Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
+ME+LHFR+LPAG N VAIACYSGYNQEDSVI+NQS+IDRG FRS+F+R+Y+DE+KK
Sbjct: 759 SMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQT 818
Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQG 537
+L++E F +P+R GMRHGSY+K+DDDGL PG RV+G+D+IIGKTTP+ S D+
Sbjct: 819 SLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGP 878
Query: 538 QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
+ R+T+RD S +LR SETG+VDQV+LTT+ +G +F KVRVRS+R+PQIGDKFSSRHGQK
Sbjct: 879 KTRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQK 938
Query: 598 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
GT GM Y QED+P+TVEGI PDIIVNPHAIPSRMTIGQLIEC++GKV+A G EGDATPF
Sbjct: 939 GTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPF 998
Query: 658 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
TDVTV+ IS+ALHK GYQM G E MYNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR
Sbjct: 999 TDVTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRS 1058
Query: 718 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERLFDQSD+YRVH+C+ CG
Sbjct: 1059 RGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICG 1118
Query: 778 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
LIAIANLKKNSFECR CKNKT I Q+ +PYA KLLFQELM+M+IAPRM T+
Sbjct: 1119 LIAIANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSIAPRMFTQ 1169
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 2991 (1057.9 bits), Expect = 8.3e-312, P = 8.3e-312
Identities = 569/832 (68%), Positives = 663/832 (79%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +DL + E AY TYTHCEIHPS
Sbjct: 647 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 702 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
G RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882 GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 2991 (1057.9 bits), Expect = 8.3e-312, P = 8.3e-312
Identities = 569/832 (68%), Positives = 663/832 (79%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +DL + E AY TYTHCEIHPS
Sbjct: 647 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 702 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
G RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882 GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 2991 (1057.9 bits), Expect = 8.3e-312, P = 8.3e-312
Identities = 569/832 (68%), Positives = 663/832 (79%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 340 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 399
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 400 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 459
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 460 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 519
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 520 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 579
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 580 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 639
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +DL + E AY TYTHCEIHPS
Sbjct: 640 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 694
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 695 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 754
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 755 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 814
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 815 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
G RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 875 GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 935 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 994
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 995 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1054
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1055 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1114
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1115 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 2985 (1055.8 bits), Expect = 3.6e-311, P = 3.6e-311
Identities = 568/832 (68%), Positives = 662/832 (79%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 340 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 399
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 400 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 459
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 460 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 519
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 520 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 579
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 580 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 639
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +DL + E AY TYTHCEIHPS
Sbjct: 640 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 694
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 695 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 754
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 755 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 814
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 815 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 875 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 935 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 994
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 995 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1054
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1055 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1114
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1115 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 2985 (1055.8 bits), Expect = 3.6e-311, P = 3.6e-311
Identities = 568/832 (68%), Positives = 662/832 (79%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 272 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 331
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 332 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 391
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 392 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 451
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 452 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 511
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 512 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 571
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +DL + E AY TYTHCEIHPS
Sbjct: 572 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 626
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 627 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 686
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 687 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 746
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 747 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 806
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 807 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 866
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 867 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 926
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 927 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 986
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 987 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1046
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1047 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1098
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 2985 (1055.8 bits), Expect = 3.6e-311, P = 3.6e-311
Identities = 568/832 (68%), Positives = 662/832 (79%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +DL + E AY TYTHCEIHPS
Sbjct: 647 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 702 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 2985 (1055.8 bits), Expect = 3.6e-311, P = 3.6e-311
Identities = 568/832 (68%), Positives = 662/832 (79%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +DL + E AY TYTHCEIHPS
Sbjct: 647 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 702 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 2981 (1054.4 bits), Expect = 9.5e-311, P = 9.5e-311
Identities = 567/832 (68%), Positives = 662/832 (79%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +DL + E AY TYTHCEIHPS
Sbjct: 647 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 702 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH Y+KLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 2977 (1053.0 bits), Expect = 2.5e-310, P = 2.5e-310
Identities = 566/832 (68%), Positives = 662/832 (79%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +DL + + AY TYTHCEIHPS
Sbjct: 647 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 701
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 702 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 822 GYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
R+T+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882 STNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 2968 (1049.8 bits), Expect = 2.3e-309, P = 2.3e-309
Identities = 566/833 (67%), Positives = 662/833 (79%)
Query: 1 MLPHVGTGDFCETKKAYYFGY-IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 59
MLPHVG DFCETKKAY+ GY ++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 348 MLPHVGVSDFCETKKAYFLGYYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFR 407
Query: 60 MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 118
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAG
Sbjct: 408 GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAG 467
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
VSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKN
Sbjct: 468 VSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKN 527
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
LALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+
Sbjct: 528 LALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMN 587
Query: 239 TXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 297
T +D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++
Sbjct: 588 TLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKE 647
Query: 298 RESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHP 357
RE + W DLVA G +DL + + AY TYTHCEIHP
Sbjct: 648 REY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHP 702
Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
S+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVT
Sbjct: 703 SMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVT 762
Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
TR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 763 TRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESK 822
Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEA 535
G +E F +P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE
Sbjct: 823 KGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDEL 882
Query: 536 QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
+ R+T+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 883 ESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHG 942
Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
QKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDAT
Sbjct: 943 QKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDAT 1002
Query: 656 PFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
PF D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIH
Sbjct: 1003 PFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIH 1062
Query: 715 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 774
SR RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1063 SRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCN 1122
Query: 775 HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1123 LCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1175
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 2915 (1031.2 bits), Expect = 9.4e-304, P = 9.4e-304
Identities = 552/831 (66%), Positives = 650/831 (78%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL +LGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 348 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LF+ L ++VR Y QK +D GKD NL+ AIK IT GL+YSLATGNWG Q A RAGV
Sbjct: 408 LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468 SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEI+P+ I ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVE LL+KK + L++R
Sbjct: 588 LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKER 647
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
+ + W LVA G DL Q + + AY TYTHCEIHP+
Sbjct: 648 DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYP KPLVTT
Sbjct: 704 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K
Sbjct: 764 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 823
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
+E+F +P R GMR+ YDKLDDDG+ PG RVSG+DV+IGKT P + DE
Sbjct: 824 VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
R+++RD S LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884 SNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDM +T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944 KGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLM 1174
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 1877 (665.8 bits), Expect = 8.1e-298, Sum P(2) = 8.1e-298
Identities = 347/493 (70%), Positives = 415/493 (84%)
Query: 339 RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
R+ P + +THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY
Sbjct: 715 RVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNY 774
Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
Q RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ+S
Sbjct: 775 QVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQAS 834
Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
IDRG FRS+F+R+Y D+EKK+G V E+F RP RS T+ M+HG+YDKL+DDGL PGTRV
Sbjct: 835 IDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRV 894
Query: 518 SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
SGED+IIGKT PI D E GQ ++ + +RD S LR +E+G+VDQV++TTN +GL+FVK
Sbjct: 895 SGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVK 954
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
VR+RS RIPQIGDKF+SRHGQKGT+GMTY EDMP++ +GI PDII+NPHAIPSRMT+
Sbjct: 955 VRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAH 1014
Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
L+EC + KV+A G EGDATPFTDVTV+ +SK L G+Q RGFE MY+GHTGR+L A +
Sbjct: 1015 LVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQV 1074
Query: 696 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 755
FLGPTYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDC I+HG S
Sbjct: 1075 FLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSS 1134
Query: 756 FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 815
L+ERLFD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T QV++PYA KLLFQE
Sbjct: 1135 VLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQE 1194
Query: 816 LMAMAIAPRMLTK 828
LM+M IAPR+ TK
Sbjct: 1195 LMSMNIAPRLFTK 1207
Score = 1006 (359.2 bits), Expect = 8.1e-298, Sum P(2) = 8.1e-298
Identities = 194/327 (59%), Positives = 242/327 (74%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+ T + ET+KA++ GY+IHR+LLCAL RR DDRDH+G KRLDLAGPLL LFRM
Sbjct: 346 LLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRM 405
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LFRK+TRDV Y+QKCV+ ++ NL A+K+ IT+GL+YSLATGNWG Q + R GV
Sbjct: 406 LFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGV 465
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 466 SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 525
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+LM Y++VGS + PI+EFLEEWG E E+ +P+ P ATK+FVNG W+G+HRDP L +T
Sbjct: 526 SLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTET 585
Query: 240 XXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
+D++ EV +VRDIR KELR++TD GR RPLFIV+ L I+K I
Sbjct: 586 LRSLRRRLDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHI 645
Query: 293 IAL-QQRE----SPEDG-GWHDLVAKG 313
L + ++ PE GW LV+ G
Sbjct: 646 QQLIEDKDRYDIDPEQRFGWTALVSSG 672
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 1930 (684.5 bits), Expect = 2.5e-296, Sum P(2) = 2.5e-296
Identities = 357/485 (73%), Positives = 413/485 (85%)
Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
+A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A
Sbjct: 734 HATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMA 793
Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
+LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRS
Sbjct: 794 NILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRS 853
Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
LFFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLDDDGL PG RVSGEDVIIG
Sbjct: 854 LFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIG 913
Query: 526 KTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 583
KTTPIS DE + GQ + Y ++RD S LR +E G+VDQVL+TTN DGL+FVKVRVR+ +I
Sbjct: 914 KTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKI 973
Query: 584 PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 643
PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ K
Sbjct: 974 PQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK 1033
Query: 644 VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
VAA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPTYYQ
Sbjct: 1034 VAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQ 1093
Query: 704 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFD 763
RL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL +
Sbjct: 1094 RLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLME 1153
Query: 764 QSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIA 822
SDA+RVH+C CGL+ IA L N FEC+GC NK DI Q+HIPYA KLLFQELMAM I
Sbjct: 1154 ASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNIT 1213
Query: 823 PRMLT 827
PR+ T
Sbjct: 1214 PRLYT 1218
Score = 939 (335.6 bits), Expect = 2.5e-296, Sum P(2) = 2.5e-296
Identities = 182/316 (57%), Positives = 233/316 (73%)
Query: 2 LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
LPH+ + E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+ L
Sbjct: 361 LPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTL 420
Query: 62 FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
F+KLT+D+ Y+Q+ V+ D N++ AI AKTITSGLKY+LATGNWG Q A +RAGVS
Sbjct: 421 FKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVS 480
Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
QVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 481 QVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 540
Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTX 240
LM I+VG+ PI+ FL EWG E E+ P P AT++FVNG W G+HR+P L++T
Sbjct: 541 LMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETL 600
Query: 241 XXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIA 294
D+N EV ++RDIR KEL+I+TD GR RPLFIVE + L ++K I
Sbjct: 601 RTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAK 660
Query: 295 LQQRESPE-DGGWHDL 309
L E + +GG+ D+
Sbjct: 661 LMATEYQDIEGGFEDV 676
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 2835 (1003.0 bits), Expect = 2.8e-295, P = 2.8e-295
Identities = 542/847 (63%), Positives = 643/847 (75%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPHVG + CETKKA++ GY++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR
Sbjct: 353 LLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRS 412
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LFR L +++R QK ++ D L +K TIT GL YSLATGNWG Q A +RAGV
Sbjct: 413 LFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGV 472
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNL
Sbjct: 473 SQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNL 532
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EE+SP+ I ATKIFVNG WVGIHR+P+ L+ T
Sbjct: 533 ALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTT 592
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV +VRDIR +E+RIYTD GR RPL IVE Q+L +KKR I L++
Sbjct: 593 LKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEA 652
Query: 299 -ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHP 357
+ W DLV G DL Y DT+THCEIHP
Sbjct: 653 ADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSG------GYCDTHTHCEIHP 706
Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+ RMDTLA+VLYYPQKPLVT
Sbjct: 707 AMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 766
Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
TR+ME+L F +LPAGINAIVAI YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E
Sbjct: 767 TRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEAN 826
Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEA 535
+ +E +P R GMRH YDKLD+DG+ PG RVSG+DVIIGKT P D+
Sbjct: 827 LDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDL 886
Query: 536 QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
+Y +RD S LR SETG+VDQV+L+ N+DG +FVK+R+RSVR+PQIGDKF+SRHG
Sbjct: 887 DASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHG 946
Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
QKGT+G+ Y QEDMP+T EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDAT
Sbjct: 947 QKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDAT 1006
Query: 656 PFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
PF D V V IS L + GY +RG E MYNGHTG++LT IF GPTYYQRLKHMVDDKIH
Sbjct: 1007 PFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIH 1066
Query: 715 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 774
SR RGP+Q++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC
Sbjct: 1067 SRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCN 1126
Query: 775 HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-EDTKQ 833
+CGLI +ANL+ NSFEC+ C+NKT + V IPYACKLLFQELM+M+IAPR++ K +K+
Sbjct: 1127 NCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPRQSKR 1186
Query: 834 SKDHKKK 840
SK H+ +
Sbjct: 1187 SK-HQSE 1192
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 1898 (673.2 bits), Expect = 1.1e-291, Sum P(2) = 1.1e-291
Identities = 351/483 (72%), Positives = 411/483 (85%)
Query: 349 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 408
TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A +L
Sbjct: 744 TYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANIL 803
Query: 409 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 468
YYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFF
Sbjct: 804 YYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFF 863
Query: 469 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 528
RSY D EK+ G E F +P RS+T+ ++HG+Y+KLD+DGL PG RVSGED+IIGKTT
Sbjct: 864 RSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTT 923
Query: 529 PISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
PI D E GQ ++Y T+RD S LR +E+G+VDQVLLTTN DG +FVKVR+R+ ++PQI
Sbjct: 924 PIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQI 983
Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
GDKF+SRHGQKGT+G+TY EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ KV++
Sbjct: 984 GDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSS 1043
Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
G EGDA+PFTDVT + IS L GYQ RGFE MYNGHTG++L A +F GPTYYQRL+
Sbjct: 1044 LSGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLR 1103
Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL + SD
Sbjct: 1104 HMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASD 1163
Query: 767 AYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
A+RVHVC CGL++ IANLKKN FECR CKNKT+I Q+HIPYA KLLFQELMAM I+PR+
Sbjct: 1164 AFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1223
Query: 826 LTK 828
T+
Sbjct: 1224 YTE 1226
Score = 927 (331.4 bits), Expect = 1.1e-291, Sum P(2) = 1.1e-291
Identities = 170/282 (60%), Positives = 221/282 (78%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LP++ + ET+KA++ GY+++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR+
Sbjct: 355 LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 414
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LF+KLT+D+ Y+Q+CV+NG D N+ A+K++TIT GL+YSLATGNWG Q A +RAGV
Sbjct: 415 LFKKLTKDIYNYMQRCVENGGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGV 474
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+LM I+VG+ + PIL FL ++G E E+ P+ P +T++FVNG WVG+HRDP LV
Sbjct: 535 SLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDF 594
Query: 240 XXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
D++ EV ++RDIR KE +I+TD GR RPLFIV+
Sbjct: 595 MRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVD 636
Score = 39 (18.8 bits), Expect = 9.6e-198, Sum P(2) = 9.6e-198
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 154
A + QV + S +SH+ + S I + +L Q+
Sbjct: 214 ANIVQVFKKAA-PSPISHVAEIRSAIEKGSRLISSMQI 250
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 1898 (673.2 bits), Expect = 1.1e-291, Sum P(2) = 1.1e-291
Identities = 351/483 (72%), Positives = 411/483 (85%)
Query: 349 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 408
TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A +L
Sbjct: 744 TYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANIL 803
Query: 409 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 468
YYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFF
Sbjct: 804 YYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFF 863
Query: 469 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 528
RSY D EK+ G E F +P RS+T+ ++HG+Y+KLD+DGL PG RVSGED+IIGKTT
Sbjct: 864 RSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTT 923
Query: 529 PISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
PI D E GQ ++Y T+RD S LR +E+G+VDQVLLTTN DG +FVKVR+R+ ++PQI
Sbjct: 924 PIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQI 983
Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
GDKF+SRHGQKGT+G+TY EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ KV++
Sbjct: 984 GDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSS 1043
Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
G EGDA+PFTDVT + IS L GYQ RGFE MYNGHTG++L A +F GPTYYQRL+
Sbjct: 1044 LSGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLR 1103
Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL + SD
Sbjct: 1104 HMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASD 1163
Query: 767 AYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
A+RVHVC CGL++ IANLKKN FECR CKNKT+I Q+HIPYA KLLFQELMAM I+PR+
Sbjct: 1164 AFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1223
Query: 826 LTK 828
T+
Sbjct: 1224 YTE 1226
Score = 927 (331.4 bits), Expect = 1.1e-291, Sum P(2) = 1.1e-291
Identities = 170/282 (60%), Positives = 221/282 (78%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LP++ + ET+KA++ GY+++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR+
Sbjct: 355 LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 414
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LF+KLT+D+ Y+Q+CV+NG D N+ A+K++TIT GL+YSLATGNWG Q A +RAGV
Sbjct: 415 LFKKLTKDIYNYMQRCVENGGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGV 474
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+LM I+VG+ + PIL FL ++G E E+ P+ P +T++FVNG WVG+HRDP LV
Sbjct: 535 SLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDF 594
Query: 240 XXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
D++ EV ++RDIR KE +I+TD GR RPLFIV+
Sbjct: 595 MRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVD 636
Score = 39 (18.8 bits), Expect = 9.6e-198, Sum P(2) = 9.6e-198
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 154
A + QV + S +SH+ + S I + +L Q+
Sbjct: 214 ANIVQVFKKAA-PSPISHVAEIRSAIEKGSRLISSMQI 250
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 1858 (659.1 bits), Expect = 6.3e-289, Sum P(2) = 6.3e-289
Identities = 350/484 (72%), Positives = 405/484 (83%)
Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+ RM+T+A
Sbjct: 761 AHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMAN 820
Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
+LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSL
Sbjct: 821 ILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 880
Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
F+R+Y D EK +G V E F +P RS+T+GMR G+YDKLD+DG+ PG RVSGED+IIGK
Sbjct: 881 FYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGK 940
Query: 527 TTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
T P++ D E GQ ++ +T+ D S LR +E G+VDQVL+TT D LR VKVR+R ++P
Sbjct: 941 TAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVP 1000
Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
QIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI LIEC + KV
Sbjct: 1001 QIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKV 1060
Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
+A G EGDATPFTDVTVD+IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 1061 SALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 1120
Query: 705 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 764
L+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD
Sbjct: 1121 LRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDV 1180
Query: 765 SDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 823
SD +RVH+C+ CGL+ IA LKK FECR C NK I QVHIPYA KLLFQEL AM I+
Sbjct: 1181 SDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNISA 1240
Query: 824 RMLT 827
RM T
Sbjct: 1241 RMFT 1244
Score = 941 (336.3 bits), Expect = 6.3e-289, Sum P(2) = 6.3e-289
Identities = 176/312 (56%), Positives = 231/312 (74%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+ + ET+KA++ GY++HRLL CALGRR DDRDH+G KRLDLAGPLL LFR+
Sbjct: 378 LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 437
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LF ++TRD++ YVQ+CV++ +++ L +KA T+T GL+Y+LATGNWG Q AA +AGV
Sbjct: 438 LFTRVTRDLQRYVQRCVESDREIYLNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGV 497
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 498 SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 557
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YITVG+ + PI++F+ + E EE P V P ATK+FVNG WVG+HR P LV+T
Sbjct: 558 ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVET 617
Query: 240 XXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
++ EV ++RDIR +E +I+TD GR RPLF+V+ L++ K I
Sbjct: 618 MQALRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHI 677
Query: 293 IALQQ-RESPED 303
L++ +E P D
Sbjct: 678 RKLEEDKELPPD 689
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 2715 (960.8 bits), Expect = 1.5e-282, P = 1.5e-282
Identities = 522/776 (67%), Positives = 607/776 (78%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 347 VLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG-TRAGV 119
+F+ L +++R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG A RAGV
Sbjct: 407 MFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGV 466
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467 SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586
Query: 240 XXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+K+R I L++R
Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKER 646
Query: 299 ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +DL + + AY TYTHCEIHPS
Sbjct: 647 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 701
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 702 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH YDKLDDDGL PG RVSGEDVIIGKT P + DE
Sbjct: 822 GFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELD 881
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QE + +EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATP
Sbjct: 942 KGTCGIQYRQEVRVYIIEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATP 1001
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V +S L + GY +RG E +YNG TGR+LT+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHS 1061
Query: 716 RGRGPVQILTRQPAEGRSR--DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 769
R RGPVQIL RQP EGRSR DGGLRFGEMERDC IAHGA+ FLKERLF+ SD Y+
Sbjct: 1062 RARGPVQILNRQPMEGRSRRSDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQ 1117
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 1511 (537.0 bits), Expect = 1.6e-263, Sum P(2) = 1.6e-263
Identities = 290/540 (53%), Positives = 379/540 (70%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+GT E+KK+Y+ GY+I+RLLL LGR EDDRDH+G KRLD+AGPL+ F
Sbjct: 365 VLPHMGTHPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFST 424
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA-KTITSGLKYSLATGNWGQ-ANAAGTRAG 118
FRK+ +DVR +Q+ +DN K ++ AI++ IT G++Y LATGNWG+ + R G
Sbjct: 425 YFRKMAKDVRRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTG 484
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVLNRLTY+S LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKN
Sbjct: 485 VAQVLNRLTYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKN 544
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
L+LM I+VG++ I EFL EWG E+ +E+ P ++ + K+F+NG WVG + L++
Sbjct: 545 LSLMCDISVGTSTNNIYEFLTEWGLESLDEVPPELMKEKVKLFLNGKWVGCFNQIDNLIE 604
Query: 239 TXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE----KQRLLIKKRDIIA 294
T D++ E +VRD+ KE++I+TD GR RPL++V+ + +L + K +
Sbjct: 605 TLYELRRRCDISPEASIVRDVNSKEIKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNN 664
Query: 295 LQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCE 354
+++ PE W L+ +G +DL Y + +THCE
Sbjct: 665 IEKY--PETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGT-----GYYNNFTHCE 717
Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 414
IHPSLILGVCASIIPF DHNQSPRNTYQSAMGKQAMGIYVTN+ R+DTLA++LYYPQKP
Sbjct: 718 IHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQKP 777
Query: 415 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 474
LV T+ ME+L FR+LPAGINAIVAI CY+GYNQEDS+IMNQSSIDRG FRS+F+R+Y E
Sbjct: 778 LVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSE 837
Query: 475 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 534
EK+ G+L+ E F +P ++ G Y KLDDDGL PG RV G+D+IIGK +P DE
Sbjct: 838 EKQQGSLIIESFEKPSVRVVKNLKRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDE 897
Score = 1048 (374.0 bits), Expect = 1.6e-263, Sum P(2) = 1.6e-263
Identities = 186/286 (65%), Positives = 240/286 (83%)
Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
++D S+SLR +E G++D V+L++N+ G +F KV+VRSVRIPQIGDKF+SRHGQKGT+G+T
Sbjct: 1054 KKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1113
Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
Y EDMP++ GI PDII+NPHA+PSRMTIG L+EC+ GKVAA G EGDATPF+ +TV
Sbjct: 1114 YRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSKITVQ 1173
Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 723
IS+ LH GY+ G E +YNGH GR L + IF+GPTYYQRLKHMV+DKIH+R RGP+ +
Sbjct: 1174 EISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTM 1233
Query: 724 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 783
+TRQP EGRSRDGGLRFGEMERDCMI+HG++ LKERLF++SDAYRVHVC++CGL IA+
Sbjct: 1234 ITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIAD 1293
Query: 784 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
+ KN++EC C +KT+I Q+++PYACKLLFQELM MAI P+++ ++
Sbjct: 1294 INKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLED 1339
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 1511 (537.0 bits), Expect = 1.6e-263, Sum P(2) = 1.6e-263
Identities = 290/540 (53%), Positives = 379/540 (70%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+GT E+KK+Y+ GY+I+RLLL LGR EDDRDH+G KRLD+AGPL+ F
Sbjct: 365 VLPHMGTHPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFST 424
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA-KTITSGLKYSLATGNWGQ-ANAAGTRAG 118
FRK+ +DVR +Q+ +DN K ++ AI++ IT G++Y LATGNWG+ + R G
Sbjct: 425 YFRKMAKDVRRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTG 484
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVLNRLTY+S LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKN
Sbjct: 485 VAQVLNRLTYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKN 544
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
L+LM I+VG++ I EFL EWG E+ +E+ P ++ + K+F+NG WVG + L++
Sbjct: 545 LSLMCDISVGTSTNNIYEFLTEWGLESLDEVPPELMKEKVKLFLNGKWVGCFNQIDNLIE 604
Query: 239 TXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE----KQRLLIKKRDIIA 294
T D++ E +VRD+ KE++I+TD GR RPL++V+ + +L + K +
Sbjct: 605 TLYELRRRCDISPEASIVRDVNSKEIKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNN 664
Query: 295 LQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCE 354
+++ PE W L+ +G +DL Y + +THCE
Sbjct: 665 IEKY--PETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGT-----GYYNNFTHCE 717
Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 414
IHPSLILGVCASIIPF DHNQSPRNTYQSAMGKQAMGIYVTN+ R+DTLA++LYYPQKP
Sbjct: 718 IHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQKP 777
Query: 415 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 474
LV T+ ME+L FR+LPAGINAIVAI CY+GYNQEDS+IMNQSSIDRG FRS+F+R+Y E
Sbjct: 778 LVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSE 837
Query: 475 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 534
EK+ G+L+ E F +P ++ G Y KLDDDGL PG RV G+D+IIGK +P DE
Sbjct: 838 EKQQGSLIIESFEKPSVRVVKNLKRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDE 897
Score = 1048 (374.0 bits), Expect = 1.6e-263, Sum P(2) = 1.6e-263
Identities = 186/286 (65%), Positives = 240/286 (83%)
Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
++D S+SLR +E G++D V+L++N+ G +F KV+VRSVRIPQIGDKF+SRHGQKGT+G+T
Sbjct: 1054 KKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1113
Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
Y EDMP++ GI PDII+NPHA+PSRMTIG L+EC+ GKVAA G EGDATPF+ +TV
Sbjct: 1114 YRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSKITVQ 1173
Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 723
IS+ LH GY+ G E +YNGH GR L + IF+GPTYYQRLKHMV+DKIH+R RGP+ +
Sbjct: 1174 EISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTM 1233
Query: 724 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 783
+TRQP EGRSRDGGLRFGEMERDCMI+HG++ LKERLF++SDAYRVHVC++CGL IA+
Sbjct: 1234 ITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIAD 1293
Query: 784 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
+ KN++EC C +KT+I Q+++PYACKLLFQELM MAI P+++ ++
Sbjct: 1294 INKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLED 1339
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 1534 (545.1 bits), Expect = 2.1e-157, P = 2.1e-157
Identities = 331/832 (39%), Positives = 482/832 (57%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F KA Y ++ R++ L + DDRD+YGNKRL+LAG LL +F
Sbjct: 323 ILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFED 382
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+++ +++ K + K ++A IT+GL+ ++++GNW RAG
Sbjct: 383 LFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKMERAG 442
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R+NS + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 443 VTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 502
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENFEEIS--PAVIPQATKIFVNGCWVGIHRDPEML 236
LALM +IT P++ G E+ E+S P P +F+NG +G+ + + L
Sbjct: 503 LALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHL 562
Query: 237 VKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
V+ + + V V + + I+TD GR RP IVE +R L+K+ + L
Sbjct: 563 VRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELN 622
Query: 297 QRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIH 356
+ D D + G ND A E+ D TH EI
Sbjct: 623 RGIRKFD----DFLLDGLIEYLDVNEE---------NDSFIA--WNEDQIEDRTTHLEIE 667
Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
P +LGVCA ++P+P HNQSPRNTYQ AMGKQAMG+ N + R+D+L Y L YP P+V
Sbjct: 668 PFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMV 727
Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
++ +E +F +LPAG NA VA+ YSGY+ ED++I+N++SIDRG+ R L +++ + K
Sbjct: 728 KSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 787
Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDE 534
+ + P + +D LD DG+ PG +V + ++I K P S +
Sbjct: 788 RYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNP 847
Query: 535 AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 594
QGQ+++ IS + E +++V+++ NA+ +K+ +R RIP+IGDKFSSRH
Sbjct: 848 LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRH 907
Query: 595 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 654
GQKG G+ QEDMP+ GI PD+I+NPH PSRMT+G+ +E + GK GK
Sbjct: 908 GQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYG 967
Query: 655 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
T F V++I L + G+ G + Y+G TG L A I+ GP YYQ+LKHMV DK+H
Sbjct: 968 TAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMH 1027
Query: 715 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 774
+R RGP +LTRQP +GRSR+GGLR GEMERDC+I++GAS + ERL SDA+ V VC
Sbjct: 1028 ARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCR 1087
Query: 775 HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
CG +A + C C++ ++ ++ +PYACKLLFQEL +M + P+M+
Sbjct: 1088 TCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMI 1133
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 1525 (541.9 bits), Expect = 1.8e-156, P = 1.8e-156
Identities = 336/835 (40%), Positives = 482/835 (57%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 316 ILTHVLVKEFNFRAKCIYTAVMVRRVIL-AQGENKVDDRDYYGNKRLELAGQLLSLLFED 374
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 375 LFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 434
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 435 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 494
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDP 233
LALM +IT PI++ G E+ EE+S P +F+NG +G+ RD
Sbjct: 495 LALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDH 551
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ LV T +N V + ++ + + I +D GR RP IV+KQ+ + + +
Sbjct: 552 QKLVNTFRIMRRAGYINEFVSISTNLSDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHME 611
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
L Q + D + +G ND A L+ DT TH
Sbjct: 612 ELAQGYR----NFEDFLHEGLVEYLDVNEE---------NDCNIA-LYEHTINKDT-THL 656
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQK
Sbjct: 657 EIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQK 716
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
P+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ +
Sbjct: 717 PMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKC 776
Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQ 532
K+ + P ++ LD DG+ PG +V + V++ K+ P ++Q
Sbjct: 777 TLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQ 836
Query: 533 DEAQGQA--SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
+G + + +D ++ + + +++V++++NA+ +K+ +R R P+IGDKF
Sbjct: 837 TPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKF 896
Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
SSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+
Sbjct: 897 SSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGR 956
Query: 651 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
T F V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV
Sbjct: 957 FHYGTAFGGSKVKDVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVL 1016
Query: 711 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 770
DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V
Sbjct: 1017 DKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEV 1076
Query: 771 HVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
VC CGL+ + C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1077 DVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1125
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 340/841 (40%), Positives = 486/841 (57%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 317 ILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 375
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 376 LFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 435
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 436 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDP 233
LALM +IT PI++ G E+ EE+S P +F+NG +G+ RD
Sbjct: 496 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDH 552
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ LV T +N V + ++ + + I +D GR RP IV+KQ+ + + +
Sbjct: 553 KKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHME 612
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
L Q + H+ + + ND A L+ DT TH
Sbjct: 613 ELAQGYRNFEDFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THL 657
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQK
Sbjct: 658 EIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQK 717
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
P+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ +
Sbjct: 718 PMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKC 777
Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQ 532
K+ + P ++ LD DG+ PG +V + V++ K+ P ++Q
Sbjct: 778 TLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQ 837
Query: 533 DEAQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 588
+G Q +Y +D I+ + + +++V++++NA+ +K+ +R R P+IGD
Sbjct: 838 IPLEGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 895
Query: 589 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
KFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK
Sbjct: 896 KFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLD 955
Query: 649 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
G+ T F V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHM
Sbjct: 956 GRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHM 1015
Query: 709 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 768
V DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+
Sbjct: 1016 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAF 1075
Query: 769 RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LT 827
V VC CGL+ + C CK+ + + IPYACKLLFQEL +M I PR+ L+
Sbjct: 1076 EVDVCGQCGLLGYSGW------CHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLS 1129
Query: 828 K 828
K
Sbjct: 1130 K 1130
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 340/841 (40%), Positives = 486/841 (57%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 317 ILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 375
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 376 LFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 435
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 436 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDP 233
LALM +IT PI++ G E+ EE+S P +F+NG +G+ RD
Sbjct: 496 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDH 552
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ LV T +N V + ++ + + I +D GR RP IV+KQ+ + + +
Sbjct: 553 KKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHME 612
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
L Q + H+ + + ND A L+ DT TH
Sbjct: 613 ELAQGYRNFEDFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THL 657
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQK
Sbjct: 658 EIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQK 717
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
P+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ +
Sbjct: 718 PMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKC 777
Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQ 532
K+ + P ++ LD DG+ PG +V + V++ K+ P ++Q
Sbjct: 778 TLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQ 837
Query: 533 DEAQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 588
+G Q +Y +D I+ + + +++V++++NA+ +K+ +R R P+IGD
Sbjct: 838 IPLEGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 895
Query: 589 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
KFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK
Sbjct: 896 KFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLD 955
Query: 649 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
G+ T F V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHM
Sbjct: 956 GRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDFVTSGITGEPLEAYIYFGPVYYQKLKHM 1015
Query: 709 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 768
V DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+
Sbjct: 1016 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAF 1075
Query: 769 RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LT 827
V VC CGL+ + C CK+ + + IPYACKLLFQEL +M I PR+ L+
Sbjct: 1076 EVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLS 1129
Query: 828 K 828
K
Sbjct: 1130 K 1130
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 340/841 (40%), Positives = 486/841 (57%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 317 ILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 375
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 376 LFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 435
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 436 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDP 233
LALM +IT PI++ G E+ EE+S P +F+NG +G+ RD
Sbjct: 496 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDH 552
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ LV T +N V + ++ + + I +D GR RP IV+KQ+ + + +
Sbjct: 553 KKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHME 612
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
L Q + H+ + + ND A L+ DT TH
Sbjct: 613 ELAQGYRNFEDFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THL 657
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQK
Sbjct: 658 EIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQK 717
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
P+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ +
Sbjct: 718 PMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKC 777
Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQ 532
K+ + P ++ LD DG+ PG +V + V++ K+ P ++Q
Sbjct: 778 TLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQ 837
Query: 533 DEAQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 588
+G Q +Y +D I+ + + +++V++++NA+ +K+ +R R P+IGD
Sbjct: 838 IPLEGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 895
Query: 589 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
KFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK
Sbjct: 896 KFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLD 955
Query: 649 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
G+ T F V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHM
Sbjct: 956 GRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHM 1015
Query: 709 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 768
V DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+
Sbjct: 1016 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAF 1075
Query: 769 RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LT 827
V VC CGL+ + C CK+ + + IPYACKLLFQEL +M I PR+ L+
Sbjct: 1076 EVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLS 1129
Query: 828 K 828
K
Sbjct: 1130 K 1130
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 1519 (539.8 bits), Expect = 8.0e-156, P = 8.0e-156
Identities = 338/837 (40%), Positives = 483/837 (57%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 317 ILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 375
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 376 LFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 435
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 436 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDP 233
LALM +IT PI++ G E+ EE+S P +F+NG +G+ RD
Sbjct: 496 LALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDH 552
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ LV T +N V + ++ + + I +D GR RP IV+KQ+ + + +
Sbjct: 553 KKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHME 612
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
L Q + H+ + + ND A L+ DT TH
Sbjct: 613 ELAQGYRNFEDFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THL 657
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQK
Sbjct: 658 EIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQK 717
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
P+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ +
Sbjct: 718 PMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKC 777
Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQ 532
K+ + P ++ LD DG+ PG +V + V++ K+ P ++Q
Sbjct: 778 TLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQ 837
Query: 533 DEAQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 588
+G Q +Y +D I+ + + +++V++++NA+ +K+ +R R P+IGD
Sbjct: 838 IPLEGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 895
Query: 589 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
KFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK
Sbjct: 896 KFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLD 955
Query: 649 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
G+ T F V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHM
Sbjct: 956 GRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHM 1015
Query: 709 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 768
V DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+
Sbjct: 1016 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAF 1075
Query: 769 RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
V VC CGL+ + C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1076 EVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 1519 (539.8 bits), Expect = 8.0e-156, P = 8.0e-156
Identities = 338/837 (40%), Positives = 483/837 (57%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 317 ILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 375
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 376 LFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 435
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 436 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDP 233
LALM +IT PI++ G E+ EE+S P +F+NG +G+ RD
Sbjct: 496 LALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDH 552
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ LV T +N V + ++ + + I +D GR RP IV+KQ+ + + +
Sbjct: 553 KKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHME 612
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
L Q + H+ + + ND A L+ DT TH
Sbjct: 613 ELAQGYRNFEDFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THL 657
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQK
Sbjct: 658 EIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQK 717
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
P+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ +
Sbjct: 718 PMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKC 777
Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQ 532
K+ + P ++ LD DG+ PG +V + V++ K+ P ++Q
Sbjct: 778 TLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQ 837
Query: 533 DEAQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 588
+G Q +Y +D I+ + + +++V++++NA+ +K+ +R R P+IGD
Sbjct: 838 IPLEGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGD 895
Query: 589 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
KFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK
Sbjct: 896 KFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLD 955
Query: 649 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
G+ T F V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHM
Sbjct: 956 GRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHM 1015
Query: 709 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 768
V DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+
Sbjct: 1016 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAF 1075
Query: 769 RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
V VC CGL+ + C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1076 EVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
Identities = 341/846 (40%), Positives = 481/846 (56%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L H+ + KA Y G + R+L+ + DDRD+ GNKRL+LAG LL LF
Sbjct: 342 VLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFED 401
Query: 61 LFRKLTRDVRAYVQKCVDNGK-----DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 115
LF+K D++ + K + D Q + + IT G+ +L+TGNW
Sbjct: 402 LFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFKME 461
Query: 116 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 175
RAGV+ VL+RL+Y S L + R+ S + K++ PR L SQ+GM+C ++TPEG+ACGL
Sbjct: 462 RAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGL 521
Query: 176 VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI-PQATK-IFVNGCWVGIHRDP 233
VKNLALM +IT PI++ +G E+ IS + T +++NG +GI R P
Sbjct: 522 VKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYLNGAILGISRYP 581
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ V + ++ +G+ + + + I TD GR RPL IV+ ++ + I
Sbjct: 582 SLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLPKVESKHIR 641
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
L++ + G+ D + +G ND + + ++ + DT TH
Sbjct: 642 LLKEGK----WGFEDFLKQGLVEYVDVNEE---------NDSLIS-VYERDITPDT-THL 686
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL Y++ YPQ+
Sbjct: 687 EIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQ 746
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
P+V T+ +E + + +LPAG NA VAI YSGY+ ED++++N+SSIDRGF R F +
Sbjct: 747 PMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSV 806
Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP---- 529
+K + G P R G + ++DDGLA G RV + + K TP
Sbjct: 807 IVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNAL 866
Query: 530 ---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
I+ Q S Y + ++ + E G +D+V+LTT +KV +R R P++
Sbjct: 867 DNSITLGHTQTVESGY--KATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPEL 924
Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
GDKFSSRHGQKG G+ QEDMP+ +GI PDII+NPH PSRMT+G++IE + GKV
Sbjct: 925 GDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGV 984
Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
G T F V++ S+ L + GY G + + +G TG L A IF+GP YYQ+LK
Sbjct: 985 LRGTLEYGTCFGGTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLK 1044
Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
HMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+IA+GAS L ERL SD
Sbjct: 1045 HMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSD 1104
Query: 767 AYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
A V VC CGL+ C C++ ++V++ IPYA KLLFQEL++M I PR+
Sbjct: 1105 ACDVDVCGQCGLLGYKGW------CNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLA 1158
Query: 827 TKEDTK 832
+++ K
Sbjct: 1159 LEDEFK 1164
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 1514 (538.0 bits), Expect = 2.7e-155, P = 2.7e-155
Identities = 342/845 (40%), Positives = 489/845 (57%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 312 ILTHVPVKEFNFRAKCIYLAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 370
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 371 LFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 430
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL++ S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 431 VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 490
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDP 233
LALM +IT PI++ G E+ EE+S P +F+NG +G+ RD
Sbjct: 491 LALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELS---YPTVFLVFLNGNILGVIRDH 547
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ LV T +N V + ++ + + I +D GR RP IV+ + +K + I
Sbjct: 548 QKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKNGKPAVKNKHIE 607
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
L Q + H+ + + ND A L+ DT TH
Sbjct: 608 ELSQGYRTFEDFLHESLVE-------------YLDVNEENDCNIA-LYEHMISKDT-THL 652
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQ+
Sbjct: 653 EIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQR 712
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF----- 468
P+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +
Sbjct: 713 PMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKC 772
Query: 469 --RSYRDE--EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT-RVSGEDVI 523
R Y ++ +K MG ++ + +P RH LD DG+ PG+ +V + V+
Sbjct: 773 TLRRYTNQTFDKVMGPMLDAETRKPI------WRHSI---LDADGICSPGSEKVENKQVL 823
Query: 524 IGKTTP-ISQDEAQGQAS--RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 580
+ K+ P ++Q +G A + R+ +S + + +++V++++NA+ VK+ +R
Sbjct: 824 VNKSMPTVTQTPLEGSAQPGQPQYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQ 883
Query: 581 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 640
R P+IGDKFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE +
Sbjct: 884 TRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELL 943
Query: 641 MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
GK G+ T F V ++ + L + GY +G + + +G TG L A I+ GP
Sbjct: 944 AGKAGVLDGRFHYGTAFGGSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPV 1003
Query: 701 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 760
YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ER
Sbjct: 1004 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLER 1063
Query: 761 LFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 820
L SDA+ V VC CGL+ + C CK+ + + IPYACKLLFQEL +M
Sbjct: 1064 LMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMN 1117
Query: 821 IAPRM 825
I PR+
Sbjct: 1118 IIPRL 1122
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 1489 (529.2 bits), Expect = 1.2e-152, P = 1.2e-152
Identities = 333/840 (39%), Positives = 471/840 (56%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
M+ H+ D KA Y G + RL+ LG DDRD YGNKRL+LAG LL LF
Sbjct: 329 MITHIACPDGNFKMKAIYLGLMTRRLIQTELGENGLDDRDFYGNKRLELAGSLLSLLFED 388
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
+F++ +++ + L ++ IT+ + +++TGNW R G
Sbjct: 389 VFKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLG 448
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R+NS + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 449 VTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 508
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEML 236
LAL+ +IT S P+L L G E+ + + + P+ T IF+NG +G DPE +
Sbjct: 509 LALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERV 568
Query: 237 VKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
VK ++ V V R + + + I +D GR RP IV+ ++ + + L+
Sbjct: 569 VKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLTQAHVQELK 628
Query: 297 QRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIH 356
+ + + D V G ND + A ++ E +T TH EI
Sbjct: 629 EGKMI----FEDFVDDGIVEYLDVNEM---------NDALIA-VYGREIGPET-THLEIE 673
Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N Q R+D++ Y+L YPQ+PLV
Sbjct: 674 PFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLV 733
Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
++ +E +F +LPAG N I+A+ YSGY+ ED++++N++S+DRG+ R L ++ + K
Sbjct: 734 KSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAK 793
Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ 536
K + P + LD +G+ G R+ + II K P+ E+
Sbjct: 794 KYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESG 853
Query: 537 ----------GQASRYTR-RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
G A R +D SI+ + ++VLLT N D KV +R R P+
Sbjct: 854 PGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPE 913
Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
+GDKFSSRHGQKG G+ QEDMP+ G+ PD+I+NPH PSRMT+G+L+E + GK
Sbjct: 914 LGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAG 973
Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
G T F V ++ + L CGY G + + +G TG+ L+A I+ GP YYQ+L
Sbjct: 974 VVNGTYHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKL 1033
Query: 706 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 765
KHMV DK+H+R RGP LTRQP EGRSR+GGLR GEMERDC+IA+GAS L ERL S
Sbjct: 1034 KHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSS 1093
Query: 766 DAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
D ++V VC CG+I C+ C++ + + IPYACKLLFQEL +M I PR+
Sbjct: 1094 DEFKVDVCTGCGVIGSKGW------CQKCRSSKSMANIKIPYACKLLFQELQSMNIVPRL 1147
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
Identities = 329/847 (38%), Positives = 474/847 (55%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
++ H+ D KA Y + R+L+ DDRD+ GNKRL+LAG LL LF
Sbjct: 401 IISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLLALLFED 460
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA-----IKAKTITSGLKYSLATGNWGQANAAGT 115
LF+K D++ + K ++ V A + + IT G+ +++TGNW
Sbjct: 461 LFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQGMNRAISTGNWSLKRFRME 520
Query: 116 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 175
RAGV+ VL+RL+Y + L + R++S + K++ PR L SQ+GM+C A+TPEG+ACGL
Sbjct: 521 RAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMICLADTPEGEACGL 580
Query: 176 VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDP 233
VKNLALM +IT PI + G E+ + + I P + I +NG + + R P
Sbjct: 581 VKNLALMTHITTNDEEGPIKNLIFMLGAEDIQTVGGKEIYAPGSYTISINGTPMALTRRP 640
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ + ++ V + + + + + TD GR RPL IVE + +KK +
Sbjct: 641 KYFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIIVEDGKSRVKKHHLR 700
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
L+ D D +A+G ND + A ++ E+ DT TH
Sbjct: 701 KLRDGTMQFD----DFLAQGLVEYVDVNEE---------NDSLIA-IY-EKDITDTTTHM 745
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G +N R+D++ Y++ YPQK
Sbjct: 746 EIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQK 805
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
P+V +R +E + QLPAG NA VA+ YSGY+ ED++++N+ S+DRGF R FR Y
Sbjct: 806 PMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVT 865
Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 533
K K+ P N +R + L+ DGLA G +V+ +V I K+TP Q
Sbjct: 866 NMKSYSNGTKDILSPPTYENDAPIR--KHALLESDGLAAVGEQVNAGEVYINKSTP-DQS 922
Query: 534 EAQGQASRYTRRDHS-----ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 588
+ G R S ++ + + +D+V+++ + + +KV R R P++GD
Sbjct: 923 MSSGMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMISATENENQIIKVLTRQTRRPEVGD 982
Query: 589 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
KFSSRHGQKG G+ Q DMP+T +GI PDII+NPH PSRMT+G+++E + GK
Sbjct: 983 KFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLS 1042
Query: 649 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
G+ G T F+ V+ +++ L G+ G + + +G TG L +F GP YYQ+LKHM
Sbjct: 1043 GQHGYGTCFSGTPVEQMTQTLIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHM 1102
Query: 709 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 768
V DK+HSR RGP LTRQP EGRSRDGGLR GEMERDC+IA+G S L ERL SD +
Sbjct: 1103 VQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRH 1162
Query: 769 RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
V VCE CG + N C+ CK+ +V++ IPYA KLL QELM+M + R+ +
Sbjct: 1163 EVDVCEQCGFMGYLNW------CQRCKSSRSVVKMVIPYAAKLLIQELMSMNVTARLKLE 1216
Query: 829 EDTKQSK 835
++ ++K
Sbjct: 1217 DEFPETK 1223
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 1167 (415.9 bits), Expect = 2.2e-150, Sum P(2) = 2.2e-150
Identities = 262/660 (39%), Positives = 365/660 (55%)
Query: 173 CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ--ATKIFVNGCWVGIH 230
CGLVKN ALM ++T + P+L G ++ ++ + A + +NG +GIH
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIH 1029
Query: 231 RDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 290
P+ V T + V + ++ + + + D GR RP+ IV+ QR + +
Sbjct: 1030 NSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQE 1089
Query: 291 DIIALQQRESPEDG--GWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYAD 348
I E +DG + D + +G ND A E A
Sbjct: 1090 HI------EDLKDGLRTFDDFIREGIIEYLDVNEE---------NDSFLA--WREAAIQP 1132
Query: 349 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 408
TH EI P +LG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL Y+L
Sbjct: 1133 WTTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLL 1192
Query: 409 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 468
+ Q+PL TR ++ L++ +LPAG NA VA+ YSGY+ ED+++MN++S+DRGF R +
Sbjct: 1193 VHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVL 1252
Query: 469 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 528
+ KK G + P ++ +R Y LD DG+A PG +++ K +
Sbjct: 1253 KKQVTSIKKHGNDTSDRIFPPTPND---LRQPKYGLLDSDGIAKPGELAQKGQILVNKYS 1309
Query: 529 PISQDEAQGQASRYTRRDHSISL---RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
P++ +A + S ++ +D+VLLT+ D +K+ +RS R P+
Sbjct: 1310 PLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPE 1369
Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
+GDKFSSRHGQKG G+ QEDMP++ GI PDII+NPH PSRMTIG++IE + GK
Sbjct: 1370 LGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAG 1429
Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
GK G T F V+NISK L G+ G + + +G TG L IF GP +YQ+L
Sbjct: 1430 VLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKL 1489
Query: 706 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 765
KHMV DK+H+R RGP LTRQP EGR+R GGLR GEMERDC+I +GAS + ERL S
Sbjct: 1490 KHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISS 1549
Query: 766 DAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
D + V+ C++CG + C+ CK+ DI + IPYACKLLFQEL AM I PR+
Sbjct: 1550 DRFTVYACKNCGFLGYEGY------CQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRL 1603
Score = 322 (118.4 bits), Expect = 2.2e-150, Sum P(2) = 2.2e-150
Identities = 62/176 (35%), Positives = 106/176 (60%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV + K Y +I R+++ + + DD+D+YGNKR++L+G L+ LF
Sbjct: 331 VLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFED 390
Query: 61 LFRKLTRDVRAYVQKCV---DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRA 117
F+K +++ V + + + ++++L I+ TIT+G +++++G W R+
Sbjct: 391 CFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERS 450
Query: 118 GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 173
GVSQVL+RL+Y S + + R+ S + K+A PR L SQWGM+CP++TPEG+AC
Sbjct: 451 GVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
Identities = 328/839 (39%), Positives = 466/839 (55%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
++ H+ D +KA Y + R+++ + DDRD+ GNKRL+LAG L+ LF
Sbjct: 333 IIAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFED 392
Query: 61 LFRKLTRDVRAYVQKCVDNGK-----DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 115
LF+K D +A + K + D L I + IT GL +++TGNW
Sbjct: 393 LFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMGLNRAISTGNWSLKRFKME 452
Query: 116 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 175
RAGV+ VL+RL+Y S L + R++S + K++ PR L SQ+GM+C A+TPEG+ACGL
Sbjct: 453 RAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGL 512
Query: 176 VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRDP 233
VKNLALM +IT P+ + G E + A + +++NG +G R P
Sbjct: 513 VKNLALMTHITTDDEEAPVKKLCIALGCEPIFALDSATLHVDGNFGVYLNGTLIGTTRFP 572
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
V V+ + + + + + I TD GR RPL IVE + + +
Sbjct: 573 VKFVHDFRHLRRVGKVSAFISIYTNTHHQAVHIATDGGRICRPLIIVENGKSKVTAEHLA 632
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
L +E D D + G +D+ +P TH
Sbjct: 633 KLINQEWSFD----DFLTHGLVEYLDVNEENDSLIALYEDDITA---NP----GAIVTHL 681
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P +LG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL Y + YPQ+
Sbjct: 682 EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQ 741
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
P+V T+ +E + + +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R R
Sbjct: 742 PMVKTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRKNTV 801
Query: 474 EEKKMGTLVKEDFG--RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
+ KK ++ R D +N +H + L DGL G+R+ V K P +
Sbjct: 802 QLKKYPNHTQDILAGMRVDENNKPIFQHQA---LGPDGLGEVGSRIFNGQVFANKCVPTN 858
Query: 532 QDEA-----QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
++ Q Q + + R+ + E +DQV+++ + + +KV +R R P++
Sbjct: 859 SGDSTLGAQQEQRAAESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPEL 918
Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
GDKFSSRHGQKG G+ QED+P+ GI+PDII+NPH PSRMT+G++IE I GK
Sbjct: 919 GDKFSSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIELISGKAGV 978
Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
G T F ++++SK L + G+ G + +Y+G TG L A IF GP YYQ+LK
Sbjct: 979 LNGSLEYGTCFGGSKLEDMSKILIEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLK 1038
Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
HMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+IA+GAS L ERL SD
Sbjct: 1039 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSD 1098
Query: 767 AYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
A+ V VC CGL+ NS+ C CK+ +++++ IPYA KLLFQEL++M IAPR+
Sbjct: 1099 AFEVDVCNKCGLMGY-----NSW-CTTCKSSENVIKMTIPYAAKLLFQELLSMNIAPRL 1151
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
Identities = 325/846 (38%), Positives = 468/846 (55%)
Query: 2 LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
L HV D +K +Y G ++ R++ L + A DD+D+ GNKRL+L+G L+ LF L
Sbjct: 324 LAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDL 383
Query: 62 FRKLT----RDVRAYVQKCVDNGKDVNLQFAIKAK--TITSGLKYSLATGNWGQANAAGT 115
F+ + ++V + K + + Q K +I+ GL+ +L+TGN+
Sbjct: 384 FKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMH 443
Query: 116 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 175
R G++QVL RL++ ++ + +++ + K++ PR L SQWGM+CP +TPEG++CGL
Sbjct: 444 RKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGL 503
Query: 176 VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDP 233
VKNLALM ++T P++ + G + E +S + P + + +NG +G H P
Sbjct: 504 VKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRP 563
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ + + V V + + + + +D GR RPL I +K +K+ +
Sbjct: 564 QYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMK 623
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXND-LVQARLHPEEAYADTYTH 352
LQ D D + G +D + E A ADT TH
Sbjct: 624 ELQDGVRTFD----DFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADT-TH 678
Query: 353 CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 412
EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG N RMDTL Y+L YPQ
Sbjct: 679 IEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQ 738
Query: 413 KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 472
+PL+TTR +E + + +L AG NA VA+ +SGY+ ED+++MN+SS+DRGF R + +
Sbjct: 739 RPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIV 798
Query: 473 DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 532
+K + P R+ G LDDDGLA PG + D+ I K P+
Sbjct: 799 AMSQKYDNCTADRILIPQRT---GPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDT 855
Query: 533 DEAQGQA---SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 589
A S+Y ET +VD+V L ++ G +K +R R P++GDK
Sbjct: 856 VTKFTSALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDK 915
Query: 590 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA--- 646
FSSRHGQKG G+ QED P++ GI PD+I+NPH PSRMT+G++IE + K
Sbjct: 916 FSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCG 975
Query: 647 --HMGKE-GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
H G G+ + D V+ IS L + G+ G + +Y+G +G + A IF+GP YYQ
Sbjct: 976 RFHYGSAFGERSGHAD-KVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQ 1034
Query: 704 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFD 763
+LKHMV DK+H+RG GP ++TRQP EG+S++GGLR GEMERDC+IA+GAS + ERL
Sbjct: 1035 KLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMI 1094
Query: 764 QSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 823
SD + V VC CGL+ N K C CKN +I + +PYACKLLFQEL +M + P
Sbjct: 1095 SSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNVVP 1154
Query: 824 RM-LTK 828
R+ LT+
Sbjct: 1155 RLKLTE 1160
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 750 (269.1 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
Identities = 152/371 (40%), Positives = 221/371 (59%)
Query: 470 SYRDEEKKMGTLVKEDFGRPDRSNT-------MGMRH-GSYDKLDDDGLAPPGTRVSGED 521
SY + K+ + K+ +G + SN M + Y LD DG+A G +
Sbjct: 1085 SYNNNVSKIDNVKKDSYGHKNISNESKDDIKKMANKDIRKYHSLDMDGVASIGYLIKEGQ 1144
Query: 522 VIIGKTTPIS-QDEAQ--GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
+ + K +P + +D + G+ + + I + +D+++ T N++GL+ K+ +
Sbjct: 1145 LYVNKFSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYIDKIIFTENSEGLKLYKIIM 1204
Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
R R+P++GDKFSSRHGQKG VG+ QEDMP+T GI PD+I+NPH PSRMT+G+L+E
Sbjct: 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLE 1264
Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
+ K A G+ + F+ + I++ L + G+ E +Y+G TG L IF+G
Sbjct: 1265 LVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMG 1324
Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 758
P YYQ+LKHMV DKIH+R RGP Q+LTRQP EGRS++GGLR GEMERDC+IA+G S+ L
Sbjct: 1325 PIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLL 1384
Query: 759 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 818
ERL SD V++CE CG++ C CK + + +PYACKLLFQEL
Sbjct: 1385 ERLMLSSDVCNVYICEDCGMMGY------DLYCTFCKKCDKNIVIQMPYACKLLFQELQT 1438
Query: 819 MAIAPRMLTKE 829
M + P+++ KE
Sbjct: 1439 MNVFPKIIVKE 1449
Score = 717 (257.5 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
Identities = 177/484 (36%), Positives = 267/484 (55%)
Query: 15 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK--------LT 66
KA +I R+L A + DD+D+YGNKRL+LAG L+ LF L+++ +
Sbjct: 559 KARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQID 618
Query: 67 RDVRAYVQ-----KCVDNGKDVNLQFA-----IKAKTITSGLKYSLATGNWGQANAAGTR 116
+ + Y+Q K G ++N + + IT G++ +++TGNW +
Sbjct: 619 QTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEK 678
Query: 117 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 176
+GVSQVL+RL++ + + + RLNS + K++ PR L SQWG++CP +TPEG++CGLV
Sbjct: 679 SGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLV 738
Query: 177 KNLALMVYITVGSAAYP-ILEFLEEWGTENFEEISPAVIPQATKIFV--NGCWVGIHRDP 233
KNLALM ++T + ++E L G E+ + ++ I + FV NG +G+H+ P
Sbjct: 739 KNLALMTHVTNDNENNENLIEILYTLGVEDSDSLTGEEIYKEGVFFVILNGILLGVHKRP 798
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ ++ + V + + + I TD GR RPL I+E + + + I
Sbjct: 799 QKFMQRIRYLRRYGKIGQFVSIYDNFLHNAIYISTDGGRLCRPLIIIENGKSKLLPQHIK 858
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
AL+ + DL+ N+L+ A L+ + T TH
Sbjct: 859 ALENGTI----NFFDLLKSSVIEWIDVNEQ---------NNLLIA-LNESDISLST-THL 903
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P ILGV A +IP+P+HNQSPRNTYQ AMGKQA+G N R DTL Y+L YPQK
Sbjct: 904 EIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQK 963
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
PLV ++ +E ++F +LPAG NAIVA+ + GY+ ED+++MN+SSIDRGF R + R +
Sbjct: 964 PLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSV 1023
Query: 474 EEKK 477
E KK
Sbjct: 1024 ELKK 1027
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 750 (269.1 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
Identities = 152/371 (40%), Positives = 221/371 (59%)
Query: 470 SYRDEEKKMGTLVKEDFGRPDRSNT-------MGMRH-GSYDKLDDDGLAPPGTRVSGED 521
SY + K+ + K+ +G + SN M + Y LD DG+A G +
Sbjct: 1085 SYNNNVSKIDNVKKDSYGHKNISNESKDDIKKMANKDIRKYHSLDMDGVASIGYLIKEGQ 1144
Query: 522 VIIGKTTPIS-QDEAQ--GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
+ + K +P + +D + G+ + + I + +D+++ T N++GL+ K+ +
Sbjct: 1145 LYVNKFSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYIDKIIFTENSEGLKLYKIIM 1204
Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
R R+P++GDKFSSRHGQKG VG+ QEDMP+T GI PD+I+NPH PSRMT+G+L+E
Sbjct: 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLE 1264
Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
+ K A G+ + F+ + I++ L + G+ E +Y+G TG L IF+G
Sbjct: 1265 LVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMG 1324
Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 758
P YYQ+LKHMV DKIH+R RGP Q+LTRQP EGRS++GGLR GEMERDC+IA+G S+ L
Sbjct: 1325 PIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLL 1384
Query: 759 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 818
ERL SD V++CE CG++ C CK + + +PYACKLLFQEL
Sbjct: 1385 ERLMLSSDVCNVYICEDCGMMGY------DLYCTFCKKCDKNIVIQMPYACKLLFQELQT 1438
Query: 819 MAIAPRMLTKE 829
M + P+++ KE
Sbjct: 1439 MNVFPKIIVKE 1449
Score = 717 (257.5 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
Identities = 177/484 (36%), Positives = 267/484 (55%)
Query: 15 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK--------LT 66
KA +I R+L A + DD+D+YGNKRL+LAG L+ LF L+++ +
Sbjct: 559 KARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQID 618
Query: 67 RDVRAYVQ-----KCVDNGKDVNLQFA-----IKAKTITSGLKYSLATGNWGQANAAGTR 116
+ + Y+Q K G ++N + + IT G++ +++TGNW +
Sbjct: 619 QTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEK 678
Query: 117 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 176
+GVSQVL+RL++ + + + RLNS + K++ PR L SQWG++CP +TPEG++CGLV
Sbjct: 679 SGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLV 738
Query: 177 KNLALMVYITVGSAAYP-ILEFLEEWGTENFEEISPAVIPQATKIFV--NGCWVGIHRDP 233
KNLALM ++T + ++E L G E+ + ++ I + FV NG +G+H+ P
Sbjct: 739 KNLALMTHVTNDNENNENLIEILYTLGVEDSDSLTGEEIYKEGVFFVILNGILLGVHKRP 798
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ ++ + V + + + I TD GR RPL I+E + + + I
Sbjct: 799 QKFMQRIRYLRRYGKIGQFVSIYDNFLHNAIYISTDGGRLCRPLIIIENGKSKLLPQHIK 858
Query: 294 ALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHC 353
AL+ + DL+ N+L+ A L+ + T TH
Sbjct: 859 ALENGTI----NFFDLLKSSVIEWIDVNEQ---------NNLLIA-LNESDISLST-THL 903
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P ILGV A +IP+P+HNQSPRNTYQ AMGKQA+G N R DTL Y+L YPQK
Sbjct: 904 EIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQK 963
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
PLV ++ +E ++F +LPAG NAIVA+ + GY+ ED+++MN+SSIDRGF R + R +
Sbjct: 964 PLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSV 1023
Query: 474 EEKK 477
E KK
Sbjct: 1024 ELKK 1027
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
Identities = 315/781 (40%), Positives = 432/781 (55%)
Query: 9 DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 68
DF E KA Y + R+++ + DDRD+ GNKRL+LAG L+ LF LF+K D
Sbjct: 341 DFRE--KALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNND 398
Query: 69 VRAYVQKCVDNGK-----DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVL 123
+ + K + D L + + ITSGL +++TGNW RAGV+ VL
Sbjct: 399 FKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVL 458
Query: 124 NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 183
+RL+Y S L + R++S + K++ PR L SQ+GM+C A+TPEG+ACGLVKNLALM
Sbjct: 459 SRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMT 518
Query: 184 YITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 243
+IT PI + G E+ I A + +++NG +G R P V
Sbjct: 519 HITTDDEEEPIKKLCYVLGVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHL 578
Query: 244 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 303
V+ + + + + I TD GR RPL IV + +K + L E D
Sbjct: 579 RRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFD 638
Query: 304 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 363
D + G D+V P + TH EI P ILG
Sbjct: 639 ----DFLKLGLVEYLDVNEENDSYIALYEKDIV-----P------SMTHLEIEPFTILGA 683
Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL Y++ YPQ+P+V T+ +E
Sbjct: 684 VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIEL 743
Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
+ + +LPAG NA VA+ YSGY+ ED++++N+SSIDRGF R R K+ +
Sbjct: 744 IDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQ 803
Query: 484 EDFG--RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG--QA 539
+ G R D + +H S L DGL G +V + I K+ P + +A
Sbjct: 804 DIIGGMRVDENGDPIWQHQS---LGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNV 860
Query: 540 SRYTR-RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
+ T+ R+ + R E +DQV+++ + + +KV +R R P++GDKFSSRHGQKG
Sbjct: 861 NVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKG 920
Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
G+ QEDMP+ +GI PDII+NPH PSRMT+G++IE I GK G T F
Sbjct: 921 VCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG 980
Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
++++SK L G+ G + +Y+G TG L A IF GP YYQ+LKHMV DK+H+R R
Sbjct: 981 GSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARAR 1040
Query: 719 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
GP +LTRQP EGRSRDGGLR GEMERDC+IA+GAS L ERL SDA+ V VC+ CGL
Sbjct: 1041 GPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGL 1100
Query: 779 I 779
+
Sbjct: 1101 M 1101
Score = 1076 (383.8 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 230/496 (46%), Positives = 308/496 (62%)
Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
E+ + TH EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G N R+D
Sbjct: 663 EKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRID 722
Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
TL Y++ YPQ+P+V T+ +E + + +LPAG NA VA+ YSGY+ ED++++N+SSIDRGF
Sbjct: 723 TLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGF 782
Query: 463 FRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
R R K+ ++ G R D + +H S L DGL G +V
Sbjct: 783 GRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQS---LGPDGLGEVGMKVQSG 839
Query: 521 DVIIGKTTPISQDEAQG--QASRYTR-RDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 577
+ I K+ P + +A + T+ R+ + R E +DQV+++ + + +KV
Sbjct: 840 QIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVL 899
Query: 578 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 637
+R R P++GDKFSSRHGQKG G+ QEDMP+ +GI PDII+NPH PSRMT+G++I
Sbjct: 900 LRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMI 959
Query: 638 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 697
E I GK G T F ++++SK L G+ G + +Y+G TG L A IF
Sbjct: 960 ELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFF 1019
Query: 698 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFL 757
GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+IA+GAS L
Sbjct: 1020 GPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLL 1079
Query: 758 KERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 817
ERL SDA+ V VC+ CGL+ + C CK+ +I+++ IPYA KLLFQEL+
Sbjct: 1080 LERLMISSDAFEVDVCDKCGLMGYSGW------CTTCKSAENIIKMTIPYAAKLLFQELL 1133
Query: 818 AMAIAPRMLTKEDTKQ 833
+M IAPR L ED Q
Sbjct: 1134 SMNIAPR-LRLEDIFQ 1148
Score = 39 (18.8 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 171 QACGLVKNLALMVYITVGSAAY 192
+ACG++ +L +M + ++Y
Sbjct: 258 KACGILSDLEIMQLVCGNDSSY 279
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 996 (355.7 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
Identities = 219/501 (43%), Positives = 297/501 (59%)
Query: 350 YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG-KQAMGIYVTNYQFRMDTLAYVL 408
YTHCE+ S +LGV +++PF +H+ R YQS +QA+G TN R DTL+ L
Sbjct: 686 YTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQL 745
Query: 409 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 468
+YPQKPL T A E L L G NAIVA+ + GYNQEDS++MN++S++RG FRS
Sbjct: 746 FYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQI 805
Query: 469 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH---GSYDKLDDDGLAPPGTRVSGEDVIIG 525
RSY+ E + E + D G H G D L+DDG G +S D++IG
Sbjct: 806 RSYKAEVDAKDS---EKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIG 862
Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
+ T + DHSI L+H+E G+V +V+L++N +G F V +R VR P
Sbjct: 863 RCTE-------------SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPC 909
Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK-V 644
+GDKFSS HGQKG +G Q++ P+T++GI PDI++NPHA PSR T GQL+E + K +
Sbjct: 910 LGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGI 969
Query: 645 AAHMGKEGD----------ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
A + KEG ATPF+ V I++ LH+ G+ G E +YNG +G + +M
Sbjct: 970 ACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSM 1029
Query: 695 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 754
IF+GPT+YQRL HM +DK+ R GPV LTRQP R R GG++FGEMERDC+IAHGAS
Sbjct: 1030 IFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAS 1089
Query: 755 HFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFE------CRGCKNKTDIVQVHIPY 807
L ERLF SD+ ++H+C C A + +S CR C + +V+V++PY
Sbjct: 1090 ANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPY 1149
Query: 808 ACKLLFQELMAMAIAPRMLTK 828
KLL QEL +M I TK
Sbjct: 1150 GAKLLCQELFSMGITLNFDTK 1170
Score = 352 (129.0 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
Identities = 92/279 (32%), Positives = 140/279 (50%)
Query: 14 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 73
KKA + GY++ LL G+R ++RD + NKR++LAG LL R+ R + +
Sbjct: 367 KKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAM 426
Query: 74 QKCVDNGKDVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYAST 131
QK + D+ ++ + A IT+GL + +TG W R +GV L R T
Sbjct: 427 QKHLSGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQT 486
Query: 132 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 191
L LRR + GK+ R H S WG +C TP+G+ CGLVKN++L+ ++ S
Sbjct: 487 LIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLE 546
Query: 192 YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNT 251
++E L G E + + + K+ +NG WVG+ D E V ++
Sbjct: 547 -SVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPR 605
Query: 252 EVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-QRLLIKK 289
E+ + RD E+RI+TD GR RPL +VE Q+L +K
Sbjct: 606 EMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEK 644
Score = 41 (19.5 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 247 VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ VN +V V ++ +K + T G+ + VEK+ L +KK+DI+
Sbjct: 132 IKVNVQVEVFKNTVVKSDKFKT--GQDN----YVEKKILDVKKQDIL 172
Score = 41 (19.5 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 742 EMERDCMIAHGASHFLKE 759
E E DC A G LKE
Sbjct: 665 EEEEDCNTAWGIKQLLKE 682
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 830 (297.2 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
Identities = 200/495 (40%), Positives = 268/495 (54%)
Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
TH E+ P IL V A++IPF DHNQSPRN YQ MGKQ MG V NY+ R D Y+L+
Sbjct: 542 THQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHT 601
Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
PQ PLV R ++ P G N++VA+ YSGY+ ED++I+N+SS +RGF +
Sbjct: 602 PQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGF-------A 654
Query: 471 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKT 527
Y K + R + G+R G +KLD DGL G+ + D
Sbjct: 655 YGSVIKMESIDLSLKANRGGDNLVFGIRPGDPNVKEKLDADGLPFVGSILQPGD------ 708
Query: 528 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RFVK--VRVRSVRIP 584
P + T ++ ++ E G+VD + L +N G +F K + VR R P
Sbjct: 709 -PF-----YSYMNLNTGETFTVYYQNKEVGIVDNIKLCSNDRGTGKFKKACITVRVPRNP 762
Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
+GDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK
Sbjct: 763 TVGDKFASRHGQKGILSQLWPVEDMPFTENGMVPDILFNPHGFPSRMTIGMLIESMAGKS 822
Query: 645 AAHMGKEGDATPFTDVTVDNISK----ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
AA G DATPFT ++ K L GY G E MY+G +G L A IF+G
Sbjct: 823 AALHGAYYDATPFTFTEKNSALKYFGETLVSAGYNFFGTEKMYSGISGVELEADIFVGVV 882
Query: 701 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 760
YYQRL+HMV DK R GP +T QP +GR+ +GG+RFGEMERD ++AHG S L +R
Sbjct: 883 YYQRLRHMVSDKFQVRTTGPRDSVTNQPIKGRNVEGGIRFGEMERDALLAHGTSFLLHDR 942
Query: 761 LFDQSDAYRVHVCEHCGLIAIANLKK---------NSFECRGCKNKTDIVQV-HIPYACK 810
LF SD +VC CG + L++ + C C + D +Q+ +P+ +
Sbjct: 943 LFSCSDGCEAYVCTSCGSMLSPLLQRPPPSSVASSRRYSCMLC-GRMDTIQIIPVPHVFR 1001
Query: 811 LLFQELMAMAIAPRM 825
EL AM I R+
Sbjct: 1002 YFLAELAAMNIKLRL 1016
Score = 159 (61.0 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
Identities = 46/181 (25%), Positives = 81/181 (44%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 72
T+K Y + +L A G ED+ D N+ + AG L + + V+
Sbjct: 225 TEKFYLLCMMTRKLCAFAKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFV 284
Query: 73 VQKCVDNGK-DVNLQFAIKA----KTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNR 125
++K + ++N +KA +T +Y LATGN G +G+ V ++
Sbjct: 285 LEKRTEKADININADSLMKAFNMTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDK 344
Query: 126 LTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 184
L + LSH R ++ + + R+L WG +CP +TP+G+ CGL+ ++ +
Sbjct: 345 LNFVRYLSHFRCIHRGSAFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCE 404
Query: 185 I 185
I
Sbjct: 405 I 405
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 220/607 (36%), Positives = 337/607 (55%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 314 ILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 372
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 373 LFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 432
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 433 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 492
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEML 236
LALM +IT PI++ G E+ + + P +F+NG +G+ RD + L
Sbjct: 493 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKL 552
Query: 237 VKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
V T +N V + ++ + + I +D GR RP IV+KQ+ + + + L
Sbjct: 553 VNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELA 612
Query: 297 QRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIH 356
Q + H+ + + ND A L+ DT TH EI
Sbjct: 613 QGYRNFEDFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIE 657
Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V
Sbjct: 658 PFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMV 717
Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K
Sbjct: 718 KTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLK 777
Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEA 535
+ + P ++ LD DG+ PG +V + V++ K+ P ++Q
Sbjct: 778 RYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 837
Query: 536 QG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
+G Q +Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFS
Sbjct: 838 EGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 895
Query: 592 SRHGQKG 598
SRHGQKG
Sbjct: 896 SRHGQKG 902
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 820 (293.7 bits), Expect = 7.8e-95, Sum P(2) = 7.8e-95
Identities = 200/504 (39%), Positives = 268/504 (53%)
Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
+E A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 649 DEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSD 708
Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 463 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 518
++S + D +K +K+ D S G++ G KLDDDGL G R+
Sbjct: 769 AHGSVYKSEFIDLSEK----IKQG----DDSLVFGVKPGDPRILQKLDDDGLPFIGARLQ 820
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RF--VK 575
D ++ + + + Y +++ I VD + + +N G RF V
Sbjct: 821 YGDPYYSY---LNLNTGESFVTYYKSKENCI---------VDNIKVCSNDTGNGRFKCVC 868
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 869 ITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGM 928
Query: 636 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
LIE + GK AA G DATPFT + ++ + L GY G E +Y+G +G L
Sbjct: 929 LIESMAGKSAALHGLCHDATPFTFSEENSALEYFGELLKAAGYNFYGTERLYSGISGIEL 988
Query: 692 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 989 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAH 1048
Query: 752 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 801
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 1049 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCDRSDTID 1108
Query: 802 QVHIPYACKLLFQELMAMAIAPRM 825
V +PY + EL AM I ++
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKL 1132
Score = 143 (55.4 bits), Expect = 7.8e-95, Sum P(2) = 7.8e-95
Identities = 51/195 (26%), Positives = 87/195 (44%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLT 66
T+K Y + +L A G ED+ D N+ + G L + ++ K+
Sbjct: 340 TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMESWLVSIKIA 399
Query: 67 RDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLN 124
D R+ N +++ F + +T +Y LATGN G +G+ V +
Sbjct: 400 LDKRSQKTNVSINTENLMRIFNL-GTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVAD 458
Query: 125 RLTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALM 182
+L + LSH R ++ + + R+L WG +CP TP+G+ CGL+ +L A+
Sbjct: 459 KLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVC 518
Query: 183 VYIT--VGSAAYPIL 195
+T V +A+ P L
Sbjct: 519 EVVTQCVYTASVPTL 533
Score = 44 (20.5 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIP 584
G VD+ L + A+ LR KV ++ RIP
Sbjct: 564 GWVDKELAPSIAESLRHFKV-LKEKRIP 590
>UNIPROTKB|F5H643 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04565 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 GO:GO:0017126
Gene3D:2.40.50.150 IPI:IPI01013053 ProteinModelPortal:F5H643
Ensembl:ENST00000537335 ArrayExpress:F5H643 Bgee:F5H643
Uniprot:F5H643
Length = 924
Score = 815 (292.0 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 438 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 497
Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 498 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 557
Query: 463 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 518
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 558 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 609
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 575
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 610 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 657
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 658 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 717
Query: 636 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 718 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 777
Query: 692 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 778 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 837
Query: 752 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 801
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 838 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 897
Query: 802 QVHIPYACKLLFQELMAMAIAPRM 825
V +PY + EL AM I ++
Sbjct: 898 TVSVPYVFRYFVAELAAMNIKVKL 921
Score = 141 (54.7 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 53/194 (27%), Positives = 85/194 (43%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL-LGGLFRMLFRKLTRDVRA 71
T+K Y + +L A G ED+ D N+ + G L L L L L A
Sbjct: 129 TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIA 188
Query: 72 YVQKCVDNGKDVNLQFAIKAKT----ITSGLKYSLATGNWGQANAAGTR--AGVSQVLNR 125
+ +K +N ++ T +T +Y ATGN G +G+ V ++
Sbjct: 189 FDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADK 248
Query: 126 LTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMV 183
L + LSH R ++ + + R+L WG +CP TP+G+ CGL+ +L A+
Sbjct: 249 LNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCE 308
Query: 184 YIT--VGSAAYPIL 195
+T V +A+ P L
Sbjct: 309 VVTQFVYTASIPAL 322
Score = 47 (21.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIP 584
G VD+ L AD LR KV +R RIP
Sbjct: 353 GWVDKDLAPGIADSLRHFKV-LREKRIP 379
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 815 (292.0 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 649 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 708
Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 463 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 518
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 769 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 820
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 575
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 821 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 868
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 869 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 928
Query: 636 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 929 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 988
Query: 692 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 989 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 1048
Query: 752 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 801
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 1049 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 1108
Query: 802 QVHIPYACKLLFQELMAMAIAPRM 825
V +PY + EL AM I ++
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKL 1132
Score = 141 (54.7 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 53/194 (27%), Positives = 85/194 (43%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL-LGGLFRMLFRKLTRDVRA 71
T+K Y + +L A G ED+ D N+ + G L L L L L A
Sbjct: 340 TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIA 399
Query: 72 YVQKCVDNGKDVNLQFAIKAKT----ITSGLKYSLATGNWGQANAAGTR--AGVSQVLNR 125
+ +K +N ++ T +T +Y ATGN G +G+ V ++
Sbjct: 400 FDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADK 459
Query: 126 LTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMV 183
L + LSH R ++ + + R+L WG +CP TP+G+ CGL+ +L A+
Sbjct: 460 LNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCE 519
Query: 184 YIT--VGSAAYPIL 195
+T V +A+ P L
Sbjct: 520 VVTQFVYTASIPAL 533
Score = 47 (21.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIP 584
G VD+ L AD LR KV +R RIP
Sbjct: 564 GWVDKDLAPGIADSLRHFKV-LREKRIP 590
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 815 (292.0 bits), Expect = 1.8e-93, Sum P(2) = 1.8e-93
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 687 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 746
Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 747 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 806
Query: 463 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 518
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 807 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 858
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 575
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 859 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 906
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 907 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 966
Query: 636 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 967 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 1026
Query: 692 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 1027 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 1086
Query: 752 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 801
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 1087 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 1146
Query: 802 QVHIPYACKLLFQELMAMAIAPRM 825
V +PY + EL AM I ++
Sbjct: 1147 TVSVPYVFRYFVAELAAMNIKVKL 1170
Score = 141 (54.7 bits), Expect = 1.8e-93, Sum P(2) = 1.8e-93
Identities = 53/194 (27%), Positives = 85/194 (43%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL-LGGLFRMLFRKLTRDVRA 71
T+K Y + +L A G ED+ D N+ + G L L L L L A
Sbjct: 378 TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIA 437
Query: 72 YVQKCVDNGKDVNLQFAIKAKT----ITSGLKYSLATGNWGQANAAGTR--AGVSQVLNR 125
+ +K +N ++ T +T +Y ATGN G +G+ V ++
Sbjct: 438 FDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADK 497
Query: 126 LTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMV 183
L + LSH R ++ + + R+L WG +CP TP+G+ CGL+ +L A+
Sbjct: 498 LNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCE 557
Query: 184 YIT--VGSAAYPIL 195
+T V +A+ P L
Sbjct: 558 VVTQFVYTASIPAL 571
Score = 47 (21.6 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIP 584
G VD+ L AD LR KV +R RIP
Sbjct: 602 GWVDKDLAPGIADSLRHFKV-LREKRIP 628
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 780 (279.6 bits), Expect = 3.7e-93, Sum P(3) = 3.7e-93
Identities = 182/469 (38%), Positives = 250/469 (53%)
Query: 342 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 401
PEE + ++H E P+ IL + A++ PF D NQSPRN YQ MGKQ MG T R
Sbjct: 653 PEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRS 712
Query: 402 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 461
D Y L Q P+V + P G+NAIVA+ Y+GY+ +D++I+N+S+ +RG
Sbjct: 713 DNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERG 772
Query: 462 FFRSLFFRSYR---DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
F +++ + + ++ G + + FG + +KLD DGL G +V
Sbjct: 773 FGYGTVYKTEKVDLSQSRRRGDPITQHFGFGSDEWPEAWK----EKLDADGLPLIGVKVE 828
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLT---TNADGLRFVK 575
D I+ D+ G+ T HS SE +++V L +N + +
Sbjct: 829 EGDPIVAY-----YDDTLGKTKVKTY--HS-----SEPAYIEEVKLLGDDSNEQEGQQIT 876
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
++ R R P IGDKFSSRHGQKG + Q DMP+T G+ PD+I+NPHA PSRMTIG
Sbjct: 877 IKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGM 936
Query: 636 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
+E + GK A G D+TP+ D D + L K GY G E MY+G TG L
Sbjct: 937 FVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEEL 996
Query: 692 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
I++G YYQRL+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I H
Sbjct: 997 RCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGH 1056
Query: 752 GASHFLKERLFDQSDAYRVHVCEHCGLI-----AIANL-KKNSFECRGC 794
G S L++RL + SD + VC CG I ++ + S CR C
Sbjct: 1057 GTSFLLQDRLLNCSDYTQTPVCRSCGSILTTQTSVPRIGSMASIRCRRC 1105
Score = 148 (57.2 bits), Expect = 3.7e-93, Sum P(3) = 3.7e-93
Identities = 41/171 (23%), Positives = 79/171 (46%)
Query: 21 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 80
++I +L G A D+ D ++ + L G L G + + + ++++ +Q ++ G
Sbjct: 353 FMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRG 412
Query: 81 KDVNLQ--------FAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYAS 130
+N F+ + I L+Y L+TGN + + +G + V ++ +
Sbjct: 413 VGINFDDRKYMTRVFSRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYR 472
Query: 131 TLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
+SH R ++ E K R+L WG +CP TP+G CGL+ +L+
Sbjct: 473 FISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLS 523
Score = 47 (21.6 bits), Expect = 3.7e-93, Sum P(3) = 3.7e-93
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 799 DIVQVHIPYACKLLFQELMAMAIAPR 824
D V IP+ K L EL AM I R
Sbjct: 1135 DTTTVAIPFVLKYLDSELSAMGIKMR 1160
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 799 (286.3 bits), Expect = 9.2e-93, Sum P(2) = 9.2e-93
Identities = 190/502 (37%), Positives = 268/502 (53%)
Query: 342 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 401
P E TH E P+ + + A++ PF D+NQSPRN YQ M KQ MG + +Y FR
Sbjct: 642 PHEVIKGVTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRT 701
Query: 402 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 461
D Y + QKP+V T+ P G NA++A+ +GY+ ED++I+N+S+ +RG
Sbjct: 702 DNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERG 761
Query: 462 FFR-SLFFRSYRDEEKKMGTLVKED--FGRPDRSNTMGMRHGSYDK-LDDDGLAPPGTRV 517
F S++ Y D ++ + ++ FGRP NT+ DK +D DGL G +
Sbjct: 762 FGHGSVYKNEYIDLDQGLSRFEQKKTFFGRP---NTVV---DELDKFIDTDGLPFVGRLI 815
Query: 518 S-GEDVIIGKTTPISQDEAQGQASRYTRRDHS----ISLRHSETGMVDQVLLTTNADGLR 572
GE T I + + Y ++ + + + G T + +
Sbjct: 816 KPGEPYY----TYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGA------TRDPSKIN 865
Query: 573 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
+ V++R R P IGDKFSSRHGQKG + + + +MP+T G+ PD+I+NP+A PSRMT
Sbjct: 866 NICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMT 925
Query: 633 IGQLIECIMGKVAAHMGKEGDATPF----TDVTVDNISKALHKCGYQMRGFETMYNGHTG 688
IG L+E + GK A GK DAT F + +D + L K G+ G E MY+G TG
Sbjct: 926 IGMLVEILAGKAGAIHGKFQDATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTG 985
Query: 689 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 748
+ IF G YYQRL+HMV DK R G V LTRQP +GR GG+RFGEMERD +
Sbjct: 986 KEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSL 1045
Query: 749 IAHGASHFLKERLFDQSDAYRVHVCEHCG-LIAIANLKKNS----FECRGCKNKTDIVQV 803
+AHGAS L +RL SD ++ VC+ CG + I + K S EC+ CK+ I +
Sbjct: 1046 LAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIATI 1105
Query: 804 HIPYACKLLFQELMAMAIAPRM 825
IPY L EL A+ I ++
Sbjct: 1106 SIPYVFTYLVAELAAVNITMKL 1127
Score = 147 (56.8 bits), Expect = 9.2e-93, Sum P(2) = 9.2e-93
Identities = 46/186 (24%), Positives = 83/186 (44%)
Query: 22 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 81
+I +L G+ D+ D + + LAG + G + + + +++V K ++ K
Sbjct: 333 MIQKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKK 392
Query: 82 DVN--LQFAIKAKTITSGLK------YSLATGNWGQANAAGTR--AGVSQVLNRLTYAST 131
L A+K K + K Y LATGN ++ + +G + ++L +
Sbjct: 393 KSGDKLPDALK-KVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRF 451
Query: 132 LSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 190
+SH R ++ K R+L WG CP TP+G CGL+ +L+ +TV +A
Sbjct: 452 ISHFRSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAA 511
Query: 191 AYPILE 196
P ++
Sbjct: 512 QDPTVQ 517
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 802 (287.4 bits), Expect = 9.6e-93, Sum P(2) = 9.6e-93
Identities = 192/504 (38%), Positives = 264/504 (52%)
Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
+E + TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 649 DEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSD 708
Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
Y L PQ PLV + P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 463 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 518
++S + D + E F + + + G++ G KLDDDGL G ++
Sbjct: 769 AHGSVYKSEFID--------LSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLE 820
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 575
D ++ + +G Y +++ + VD + + +N G + +
Sbjct: 821 YGDPYYSY---LNLNTGEGFVVYYKSKENCV---------VDNIKVCSNDMGSGKFKCIC 868
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
+ VR R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 869 ITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGM 928
Query: 636 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 929 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMEL 988
Query: 692 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 989 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAH 1048
Query: 752 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 801
G S L +RLF+ SD H+C CG + L+K + C C I
Sbjct: 1049 GTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTID 1108
Query: 802 QVHIPYACKLLFQELMAMAIAPRM 825
V +PY + EL AM I ++
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKL 1132
Score = 144 (55.7 bits), Expect = 9.6e-93, Sum P(2) = 9.6e-93
Identities = 54/199 (27%), Positives = 89/199 (44%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR--------- 63
T K Y + +L A G +D+ D N+ ++ P G LF M +
Sbjct: 340 TDKFYLLCLMTRKLFALARGECMDDNPDSLVNQ--EVLSP--GQLFLMFLKEKMENWLVS 395
Query: 64 -KLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG--TRAGVS 120
K+ D RA N +++ F++ + +T +Y LATGN G +G+
Sbjct: 396 IKIVLDKRAQKANVSINNENLMKIFSMGTE-LTRPFEYLLATGNLRSKTGLGFLQDSGLC 454
Query: 121 QVLNRLTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
V ++L + LSH R ++ + + R+L WG +CP TP+G CGL+ +L
Sbjct: 455 VVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHL 514
Query: 180 -ALMVYIT--VGSAAYPIL 195
A+ +T V +A+ P L
Sbjct: 515 TAVCEVVTKFVYTASIPAL 533
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 797 (285.6 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
Identities = 194/490 (39%), Positives = 258/490 (52%)
Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
PS V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D Y L PQ PLV
Sbjct: 663 PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-YRDEE 475
+H P G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S + D
Sbjct: 723 RPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID-- 780
Query: 476 KKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 532
+ E F + D S G++ G KLD+DGL G ++ D G ++
Sbjct: 781 ------LSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGY---LNL 831
Query: 533 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDK 589
+ +G Y +++ + VD + + +N G + V V VR R P IGDK
Sbjct: 832 NTGEGFVVYYKSKENCV---------VDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDK 882
Query: 590 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 649
F+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK AA G
Sbjct: 883 FASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHG 942
Query: 650 KEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
DATPF + ++ + L GY G E +Y+G +G L A IF+G YYQRL
Sbjct: 943 LCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRL 1002
Query: 706 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 765
+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S L +RLF+ S
Sbjct: 1003 RHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCS 1062
Query: 766 DAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIVQVHIPYACKLLFQE 815
D HVC CG + L+K + C C I V +PY + E
Sbjct: 1063 DRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAE 1122
Query: 816 LMAMAIAPRM 825
L AM I ++
Sbjct: 1123 LAAMNIKVKL 1132
Score = 148 (57.2 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
Identities = 53/195 (27%), Positives = 87/195 (44%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLT 66
T K Y + +L A G ED+ D N+ + G L + +L K+
Sbjct: 340 TDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIA 399
Query: 67 RDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLN 124
D RA N +++ F++ + +T +Y LATGN G +G+ V +
Sbjct: 400 LDKRAQKTNVSINNENLMKIFSMGTE-LTRPFEYLLATGNLRSKTGLGFMQDSGLCVVAD 458
Query: 125 RLTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALM 182
+L + LSH R ++ + + R+L WG +CP TP+G CGL+ +L A+
Sbjct: 459 KLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVC 518
Query: 183 VYIT--VGSAAYPIL 195
+T V +A+ P L
Sbjct: 519 EVVTKFVYTASIPAL 533
Score = 37 (18.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
G VD+ L AD LR KV +R R + H +K
Sbjct: 564 GWVDKELAPEVADTLRRFKV-LRERRCSSLDGGGPDSHDRK 603
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 797 (285.6 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
Identities = 194/490 (39%), Positives = 258/490 (52%)
Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
PS V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D Y L PQ PLV
Sbjct: 663 PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-YRDEE 475
+H P G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S + D
Sbjct: 723 RPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID-- 780
Query: 476 KKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 532
+ E F + D S G++ G KLD+DGL G ++ D G ++
Sbjct: 781 ------LSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGY---LNL 831
Query: 533 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDK 589
+ +G Y +++ + VD + + +N G + V V VR R P IGDK
Sbjct: 832 NTGEGFVVYYKSKENCV---------VDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDK 882
Query: 590 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 649
F+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK AA G
Sbjct: 883 FASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHG 942
Query: 650 KEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
DATPF + ++ + L GY G E +Y+G +G L A IF+G YYQRL
Sbjct: 943 LCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRL 1002
Query: 706 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 765
+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S L +RLF+ S
Sbjct: 1003 RHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCS 1062
Query: 766 DAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIVQVHIPYACKLLFQE 815
D HVC CG + L+K + C C I V +PY + E
Sbjct: 1063 DRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAE 1122
Query: 816 LMAMAIAPRM 825
L AM I ++
Sbjct: 1123 LAAMNIKVKL 1132
Score = 148 (57.2 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
Identities = 53/195 (27%), Positives = 87/195 (44%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLT 66
T K Y + +L A G ED+ D N+ + G L + +L K+
Sbjct: 340 TDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIA 399
Query: 67 RDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLN 124
D RA N +++ F++ + +T +Y LATGN G +G+ V +
Sbjct: 400 LDKRAQKTNVSINNENLMKIFSMGTE-LTRPFEYLLATGNLRSKTGLGFMQDSGLCVVAD 458
Query: 125 RLTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALM 182
+L + LSH R ++ + + R+L WG +CP TP+G CGL+ +L A+
Sbjct: 459 KLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVC 518
Query: 183 VYIT--VGSAAYPIL 195
+T V +A+ P L
Sbjct: 519 EVVTKFVYTASIPAL 533
Score = 37 (18.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
G VD+ L AD LR KV +R R + H +K
Sbjct: 564 GWVDKELAPEVADTLRRFKV-LRERRCSSLDGGGPDSHDRK 603
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 804 (288.1 bits), Expect = 9.8e-92, Sum P(2) = 9.8e-92
Identities = 199/505 (39%), Positives = 267/505 (52%)
Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
+E A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + ++ R D
Sbjct: 686 DEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFKDRSD 745
Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 746 NKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMILNKASWERGF 805
Query: 463 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 518
++S + D +K +K+ D S G+R G KLDDDGL G ++
Sbjct: 806 AHGSVYKSEFIDLSEK----IKQG----DDSLVFGVRPGDPRVAQKLDDDGLPFVGAQLQ 857
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RF--VK 575
G D + T + + E +VD + + N G RF V
Sbjct: 858 -----YG-------DPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVC 905
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 906 ITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGM 965
Query: 636 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 966 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLEL 1025
Query: 692 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 1026 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 1085
Query: 752 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 801
G S L +RLF+ SD HVC CG + L+K + C C N++D +
Sbjct: 1086 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYSCSLC-NRSDTI 1144
Query: 802 Q-VHIPYACKLLFQELMAMAIAPRM 825
V +PY + EL AM I ++
Sbjct: 1145 DTVSVPYVFRYFVAELAAMNIKVKL 1169
Score = 137 (53.3 bits), Expect = 9.8e-92, Sum P(2) = 9.8e-92
Identities = 53/194 (27%), Positives = 84/194 (43%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL-LGGLFRMLFRKLTRDVRA 71
T+K Y + +L A G E++ D N+ + G L L L L L A
Sbjct: 377 TEKFYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKLEAWLVSIKIA 436
Query: 72 YVQKCVDNGKDVNLQFAIKAKTI----TSGLKYSLATGNWGQANAAG--TRAGVSQVLNR 125
+K +N + +K + T +Y LATGN G +G+ V ++
Sbjct: 437 IDKKAQKTSVSLNTENLMKILNLGIDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADK 496
Query: 126 LTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMV 183
L + LSH R ++ + + R+L WG +CP TP+G+ CGL+ +L A
Sbjct: 497 LNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTATCE 556
Query: 184 YIT--VGSAAYPIL 195
+T V +A+ P L
Sbjct: 557 VVTQFVYTASIPAL 570
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 799 (286.3 bits), Expect = 1.0e-91, Sum P(2) = 1.0e-91
Identities = 195/504 (38%), Positives = 269/504 (53%)
Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
+E A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + +Q R D
Sbjct: 649 DEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSD 708
Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 463 FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSG 519
++S E + +K+ D S G++ G KLD+DGL G ++
Sbjct: 769 AHGSVYKS---EFIDLSERIKQG----DDSLVFGVKPGDPRVLQKLDNDGLPFIGAQLKY 821
Query: 520 EDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RF--VKV 576
D ++ + +G Y +++ I VD + + +N G +F V +
Sbjct: 822 GDPYYSY---LNLNTGEGFVMYYKSKENCI---------VDNIKVCSNDTGTGKFKCVCI 869
Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
+R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG L
Sbjct: 870 TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGML 929
Query: 637 IECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 692
IE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 930 IESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLELE 989
Query: 693 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 752
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG
Sbjct: 990 ADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHG 1049
Query: 753 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIVQ 802
S L +RLF+ SD HVC CG + L+K + C C N++D +
Sbjct: 1050 TSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSALRNRKYICALC-NRSDTID 1108
Query: 803 -VHIPYACKLLFQELMAMAIAPRM 825
+ +PY + EL AM I ++
Sbjct: 1109 TISLPYVFRYFVAELAAMNIKVKL 1132
Score = 138 (53.6 bits), Expect = 1.0e-91, Sum P(2) = 1.0e-91
Identities = 49/195 (25%), Positives = 88/195 (45%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLT 66
T+K Y + +L A G E++ D N+ + G L + ++ K+
Sbjct: 340 TEKFYMLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFLMFLKEKLEAWLVSIKIA 399
Query: 67 RDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLN 124
D ++ N +++ F++ +T +Y LATGN G +G+ V +
Sbjct: 400 IDKKSQKTNVSLNSENLMKIFSLGID-LTKPFEYLLATGNLRSKTGLGFLQDSGLCVVAD 458
Query: 125 RLTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALM 182
+L + LSH R ++ + + R+L WG +CP TP+G+ CGL+ +L A+
Sbjct: 459 KLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAIC 518
Query: 183 VYIT--VGSAAYPIL 195
+T V +A+ P L
Sbjct: 519 EVVTQSVYTASIPAL 533
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 802 (287.4 bits), Expect = 3.6e-91, Sum P(2) = 3.6e-91
Identities = 190/471 (40%), Positives = 254/471 (53%)
Query: 342 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 401
P+E TH E P+ +L + A++ PF D NQSPRN YQ MGKQ MG T ++R
Sbjct: 663 PKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRT 722
Query: 402 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 461
D Y L Q P+V + P G NA+VA+ Y+GY+ ED++I+N+S+ +RG
Sbjct: 723 DNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERG 782
Query: 462 FFRSLFFR--SYR-DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
F ++ S+ ++++ G V FG S R KLD DGL G ++
Sbjct: 783 FGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTP---RREWLQKLDADGLPFIGIKLE 839
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 575
D I+ DE+ GQ + H +E G VD+V L N G + +
Sbjct: 840 DGDPIVAY-----YDESTGQ--NFIETYHG-----TEPGFVDEVRLLGNDVGDSECQQIH 887
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
V++R R P IGDKFSSRHGQKG + DMP+T G+ PDII+NPHA PSRMTIG
Sbjct: 888 VKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGM 947
Query: 636 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
IE + GK A G D+TPF D + L K GY G E MY+G TG+ +
Sbjct: 948 FIESLAGKAGACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEM 1007
Query: 692 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
A I++G YYQRL+HMV DK R GP+ LTRQP +GR R GG+RFGEMERD +I H
Sbjct: 1008 KADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGH 1067
Query: 752 GASHFLKERLFDQSDAYRVHVCEHCG-LIAI-ANLKKNSF------ECRGC 794
G S +++RL + SD + VC CG +I+I + + N CR C
Sbjct: 1068 GTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSC 1118
Score = 134 (52.2 bits), Expect = 3.6e-91, Sum P(2) = 3.6e-91
Identities = 46/172 (26%), Positives = 73/172 (42%)
Query: 21 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN- 79
++I +L G D+ D ++ + L G L G + + +RA + V
Sbjct: 351 FMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRS 410
Query: 80 --GKDVNLQ------FAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYA 129
G D + + F+ I + L+Y L+TGN + G + V +L +
Sbjct: 411 APGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFY 470
Query: 130 STLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
LSH R ++ E K R+L WG MCP TP+G CGL+ +LA
Sbjct: 471 RFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLA 522
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 766 (274.7 bits), Expect = 5.3e-91, Sum P(3) = 5.3e-91
Identities = 175/447 (39%), Positives = 239/447 (53%)
Query: 340 LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 399
L PEEA H E+HPS + ++IPFPDHNQSPRN YQ MGKQ MG V +
Sbjct: 625 LDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHS 684
Query: 400 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 459
R D Y L +PQ+P++ A E + P G NA VA+ Y+GY+ ED++ +N++S
Sbjct: 685 RADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQ 744
Query: 460 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 519
RGF + R LV E R ++ + DGL PG R
Sbjct: 745 RGFAHGTVIKVERIN------LVTE---RERKTIFYRNPREEIKTVGPDGLPIPGRRYFL 795
Query: 520 EDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 579
++V T + + + Y + +R E G D G + ++ R
Sbjct: 796 DEVYY-VTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDS--------GAKHALIQWR 846
Query: 580 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 639
R P IGDKF+SRHGQKG + E +P++ G+ PDII NPH PSRMTIG +IE
Sbjct: 847 IERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIES 906
Query: 640 IMGKVAAHMGKEGDATPFT---DVT-VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
+ GK AA G+ DA+PF D T +++ + L K GY G ET Y+G GR++ I
Sbjct: 907 MAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQI 966
Query: 696 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 755
F G YYQRL+HM+ DK R GP+ +T QP +GR + GG+RFGEMERD +IAHG S
Sbjct: 967 FFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSF 1026
Query: 756 FLKERLFDQSDAYRVHVCEHCG-LIAI 781
L++RL + SD + C CG L+++
Sbjct: 1027 VLQDRLLNCSDRDVAYACRRCGSLLSV 1053
Score = 140 (54.3 bits), Expect = 5.3e-91, Sum P(3) = 5.3e-91
Identities = 56/232 (24%), Positives = 99/232 (42%)
Query: 12 ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 71
+ +K + Y+ +L+ G A + D+ + ++G +L + R + VR
Sbjct: 311 DEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRR 370
Query: 72 YVQKCVDNGKDVNLQFA--IKAK------TITSGLKYSLATGNWGQ--ANAAGTRAGVSQ 121
++ + + KD L A +KA IT G+ Y LATGN A +G S
Sbjct: 371 KLEY-MSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSV 429
Query: 122 VLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
+ R+ +SH R ++ E + R+L WG +CP TP+G CGL+ ++
Sbjct: 430 IAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVT 489
Query: 181 LMVYITVG-SAAYPILEFLEEWGTENFEEISPAVIPQATKIF---VNGCWVG 228
I S + L E G + + A+ P +++ +NG ++G
Sbjct: 490 ASCRIVTDLSDNSNVPSLLAELGMYTHKTV--ALAPPGEELYPVLMNGRFLG 539
Score = 46 (21.3 bits), Expect = 5.3e-91, Sum P(3) = 5.3e-91
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 791 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTK 832
CR C + + +P + L EL AM + ++ + +K
Sbjct: 1082 CRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIEHPSK 1123
>UNIPROTKB|I3LGN1 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU914657
Ensembl:ENSSSCT00000028672 OMA:MSYEGYN Uniprot:I3LGN1
Length = 425
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 188/429 (43%), Positives = 267/429 (62%)
Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
Y+L YPQKP+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R
Sbjct: 2 YLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRC 61
Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
L +++ + K+ + P ++ LD DG+ PG +V + V++
Sbjct: 62 LVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVN 121
Query: 526 KTTP-ISQDEAQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 580
K+ P ++Q +G Q +Y +D I+ + + +++V++++NA+ +K+ +R
Sbjct: 122 KSMPTVTQIPLEGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQ 179
Query: 581 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 640
R P+IGDKFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE +
Sbjct: 180 TRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELL 239
Query: 641 MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
GK G+ T F V ++ + L + GY G + + +G TG L A I+ GP
Sbjct: 240 AGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPV 299
Query: 701 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 760
YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ER
Sbjct: 300 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLER 359
Query: 761 LFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 820
L SDA+ V VC CGL+ + C CK+ + + IPYACKLLFQEL +M
Sbjct: 360 LMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMN 413
Query: 821 IAPRM-LTK 828
I PR+ L+K
Sbjct: 414 IIPRLKLSK 422
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 775 (277.9 bits), Expect = 1.7e-90, Sum P(3) = 1.7e-90
Identities = 180/449 (40%), Positives = 241/449 (53%)
Query: 342 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 401
P+E + +TH E P+ IL + A++ PF D NQSPRN YQ MGKQ MG R
Sbjct: 678 PQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRS 737
Query: 402 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 461
D Y L Q P+V + P G NA+VA+ Y+GY+ +D++I+N+S+ +RG
Sbjct: 738 DNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERG 797
Query: 462 FFRSLFFRSYRDE---EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
F +++ + + + G + + FG N + +KLD+DGL GT V
Sbjct: 798 FGYGTMYKTEKVDLALNRNRGDPITQHFGF---GNDEWPKEW-LEKLDEDGLPYIGTYVE 853
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG----LRFV 574
D I D+ + T HS SE +++V L + L+ V
Sbjct: 854 EGDPICAYF-----DDTLNKTKIKTY--HS-----SEPAYIEEVNLIGDESNKFQELQTV 901
Query: 575 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
++ R R PQIGDKFSSRHGQKG + DMP++ GI PDII+NPHA PSRMTIG
Sbjct: 902 SIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIG 961
Query: 635 QLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRR 690
+E + GK A G D+TP+ D D + L K GY G E MY+G TG
Sbjct: 962 MFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEE 1021
Query: 691 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 750
L A I++G YYQRL+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I
Sbjct: 1022 LRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIG 1081
Query: 751 HGASHFLKERLFDQSDAYRVHVCEHCGLI 779
HG S L++RL + SD + VC CG I
Sbjct: 1082 HGTSFLLQDRLLNSSDYTQASVCRECGSI 1110
Score = 137 (53.3 bits), Expect = 1.7e-90, Sum P(3) = 1.7e-90
Identities = 44/191 (23%), Positives = 88/191 (46%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L H+G D + K ++I +L G + D+ D ++ + L G L G + +
Sbjct: 358 VLVHLGK-DGSQDKFRMLL-FMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQ---FAIKA-----KTITSGLKYSLATGNWGQANA 112
+ +++ A V+ ++ G +N + + + + I S ++Y L+TGN +
Sbjct: 416 KIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSG 475
Query: 113 AGTR--AGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPE 169
+ +G + V ++ + +SH R ++ + K R+L WG +CP TP+
Sbjct: 476 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPD 535
Query: 170 GQACGLVKNLA 180
G CGL+ + A
Sbjct: 536 GSPCGLLNHFA 546
Score = 42 (19.8 bits), Expect = 1.7e-90, Sum P(3) = 1.7e-90
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 803 VHIPYACKLLFQELMAMAIAPR 824
V IP+ K L EL AM I R
Sbjct: 1176 VAIPFVLKYLDSELSAMGIRLR 1197
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 790 (283.2 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 200/497 (40%), Positives = 260/497 (52%)
Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
TH E+ P +L V A IPF DHNQSPRN YQ M KQ MG + +YQ+R D Y L
Sbjct: 655 THQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQT 714
Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
PQ PLV +H P G NAIVA+ Y+GY+ ED++I+N+SS +RGF
Sbjct: 715 PQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSV--- 771
Query: 471 YRDEEKKMGTLVKED----FG-RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
Y+ E + VK D FG +P MG KLD DGL G+ + D G
Sbjct: 772 YKTEIIDLSEKVKGDDSIVFGVKPGDPKVMG-------KLDADGLPFIGSVLKYGDPFYG 824
Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
IS + Q Y ++ + + T + + V R R P
Sbjct: 825 Y---ISLNTGQSHVYFYKYQESCV------VDNIKVCSNETGTGRFKRICVTSRVPRNPT 875
Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
IGDKF+SRHGQKG + + EDMP+T G++PDI+ NPH PSRMTIG LIE + GK A
Sbjct: 876 IGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSA 935
Query: 646 AHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 701
+ G DATPFT + +++ + L GY G E +Y+G +G L A IF+G Y
Sbjct: 936 SLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVY 995
Query: 702 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERL 761
YQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S L +RL
Sbjct: 996 YQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRL 1055
Query: 762 FDQSDAYRVHVCEHCGLIAIANLKK---NSFECRGCK------NKTDIVQ-VHIPYACKL 811
F+ SD VC CG + L+K N R K NK+D ++ V +PY K
Sbjct: 1056 FNCSDRSVAQVCMDCGSLLSTLLEKPPPNWSATRHRKTICLLCNKSDSIETVSVPYVFKY 1115
Query: 812 LFQELMAMAIAPRMLTK 828
EL AM I ++ K
Sbjct: 1116 FVAELAAMNIKIKLDVK 1132
Score = 128 (50.1 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 94 ITSGLKYSLATGNWGQANAAGT--RAGVSQVLNRLTYASTLSHLRRLNSPIG-REGKLAK 150
+T +Y LATGN G +G+ V ++L + LSH R ++ + +
Sbjct: 424 LTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTT 483
Query: 151 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 193
R+L WG +CP TP+G+ CGL+ ++ + + + YP
Sbjct: 484 VRKLLPESWGFLCPVHTPDGEPCGLMNHMT--AHCEIVAPVYP 524
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 764 (274.0 bits), Expect = 5.0e-86, Sum P(2) = 5.0e-86
Identities = 173/450 (38%), Positives = 240/450 (53%)
Query: 342 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 401
P + TH E P+ IL + A++ PF D+NQSPRN YQ M KQ MG T +R
Sbjct: 687 PSDLVKGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRT 746
Query: 402 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 461
D Y L Q P+V P G NA+VAI Y+GY+ +D++I+N+SS +RG
Sbjct: 747 DNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERG 806
Query: 462 FFRSLFFRS--YRDEEK-----KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 514
F +++ + +EK K V++ FG S + LD+DG G
Sbjct: 807 FGYGTVYKTKVHSLDEKDSRRTKSKQAVQKLFGFAPGSEIRAEWRAT---LDEDGFPHIG 863
Query: 515 TRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLT---TNADGL 571
+ E I+ + D H + + SE +D + + T +
Sbjct: 864 AEIK-EGSIVAAYHTVRYDATSDSYINVDGITHFVKYKDSERAYIDSIRIMGSETGTEPA 922
Query: 572 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 631
+ + V+ R R P IGDKFSSRHGQKG + DMP++ GI PD+I+NPHA PSRM
Sbjct: 923 QAISVKYRIPRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRM 982
Query: 632 TIGQLIECIMGKVAAHMGKEGDATPFT---DVTV-DNISKALHKCGYQMRGFETMYNGHT 687
TI Q+IE + GK A G D TPF + T D + L + GY G E +Y+G T
Sbjct: 983 TIAQMIESMAGKAGALHGHPQDCTPFQFSEEYTATDYFGEQLRRAGYNYYGNEPLYSGIT 1042
Query: 688 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
G+ A IF+G +YQRL+HMV+DK R GPV LT QP +GR++ GG+R GEMERD
Sbjct: 1043 GKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNNLTGQPVKGRAKGGGIRVGEMERDS 1102
Query: 748 MIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
+IAHGA++ L++RL + SD+ R +C CG
Sbjct: 1103 LIAHGAAYILQDRLMNCSDSQRAWICRDCG 1132
Score = 130 (50.8 bits), Expect = 5.0e-86, Sum P(2) = 5.0e-86
Identities = 51/224 (22%), Positives = 94/224 (41%)
Query: 21 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR-------MLFRKLTRDV--RA 71
++I +L G A D+ D N+ + L G L G L + F + RD R
Sbjct: 384 FMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMLLKERLDEWVRSFGPILRDWSNRN 443
Query: 72 YVQKCVDNG--KD-VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRL 126
+ + D +D V+ + I ++Y L+TGN + +G + + ++
Sbjct: 444 HGARFTDPAFERDFVSKVIRRSNENIGGAMEYFLSTGNLVSPTGLDLQQTSGYTVMAEKI 503
Query: 127 TYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 185
+ +SH R ++ + K R+L WG +CP TP+G CGL+ +LA +
Sbjct: 504 NFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCLV 563
Query: 186 TVGSAAYPIL-EFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 228
L + L + G N +S + ++ + ++G +G
Sbjct: 564 ATSDTDVSHLPKLLVQLGVRNESSVS---LDESVTVQLDGRIIG 604
Score = 65 (27.9 bits), Expect = 3.6e-79, Sum P(2) = 3.6e-79
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 1 MLPHVGTGDFCETK---KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 57
+LPH+G + ET+ K ++I +L G A D+ D N+ + L G L G L
Sbjct: 361 VLPHLGNQNVTETQDYDKFKMLMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGML 420
Query: 58 FRMLFRKLTRDVRAY 72
+ +L VR++
Sbjct: 421 LK---ERLDEWVRSF 432
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 746 (267.7 bits), Expect = 7.8e-84, Sum P(2) = 7.8e-84
Identities = 188/514 (36%), Positives = 267/514 (51%)
Query: 336 VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
++ + +E Y D TH E+ + + A++IP PD+NQSPRN YQ MGKQ MG
Sbjct: 640 MEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCL 699
Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
N+ + Y L P PL +++ G NAIVA+ Y+GY+ ED++I+N+
Sbjct: 700 NWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINK 759
Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKED--FGRPDRSNTMGMRHGSYDKLDDDGLAPP 513
++ +RGF +++ K TL K+ F R + ++H LD DGL P
Sbjct: 760 AAYERGFAYGSIYKT------KFLTLDKKSSYFARHPHMPEL-IKH-----LDTDGLPHP 807
Query: 514 GTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQV--LLTTNADGL 571
G+++S G D G+ + Y + + E +V+ + L + +
Sbjct: 808 GSKLS-----YGSPLYCYFD---GEVATYK----VVKMDEKEDCIVESIRQLGSFDLSPK 855
Query: 572 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 631
+ V + +R R IGDKF+SR GQKG Y ED+P+T G+ PDI+ NPH PSRM
Sbjct: 856 KMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRM 915
Query: 632 TIGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHT 687
TI +IE + GK AA G DATPF + +D K L GY G E +Y+G
Sbjct: 916 TIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVD 975
Query: 688 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
GR +TA IF G +YQRL+HMV DK R G V+ T QP +GR R GG+RFGEMERD
Sbjct: 976 GREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDA 1035
Query: 748 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL----KKNSF--------ECRGCK 795
+I+HGA+ L++RLF SD VC CG I +A L K+N CR C
Sbjct: 1036 LISHGAAFLLQDRLFHNSDKTHTLVCHKCGSI-LAPLQRIVKRNETGGLSSQPDTCRLCG 1094
Query: 796 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
+ + + + IP++ K L EL ++ I R E
Sbjct: 1095 DNSSVSMIEIPFSFKYLVTELSSVNINARFKLNE 1128
Score = 123 (48.4 bits), Expect = 7.8e-84, Sum P(2) = 7.8e-84
Identities = 45/178 (25%), Positives = 77/178 (43%)
Query: 21 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 80
++I +L CA G+ ++ D + + L G L VR +QK + +
Sbjct: 348 FMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSP 407
Query: 81 -----KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT--RAGV---SQVLNRLTYAS 130
V Q +A + ++ LATGN G +G+ ++ +NR+ Y
Sbjct: 408 DALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRY-- 465
Query: 131 TLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 187
+SH R ++ + + RQL WG +CP TP+G CGL+ +L L I++
Sbjct: 466 -MSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISM 522
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 815 (292.0 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 466 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 525
Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 526 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 585
Query: 463 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 518
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 586 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 637
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 575
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 638 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 685
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 686 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 745
Query: 636 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 746 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 805
Query: 692 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 806 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 865
Query: 752 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 801
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 866 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 925
Query: 802 QVHIPYACKLLFQELMAMAIAPRM 825
V +PY + EL AM I ++
Sbjct: 926 TVSVPYVFRYFVAELAAMNIKVKL 949
Score = 41 (19.5 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 53
T+K Y + +L A G ED+ D N+ + G L
Sbjct: 340 TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQL 380
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 738 (264.8 bits), Expect = 1.7e-83, Sum P(3) = 1.7e-83
Identities = 171/450 (38%), Positives = 244/450 (54%)
Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
TH EIHP+ ++ V A++ P+ DHNQSPRN YQ M KQ M QFR D Y L
Sbjct: 675 THEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQT 734
Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
PQ P+V T+ + P G NAIVA+ ++G++ ED++I+N+SS++RG +++
Sbjct: 735 PQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQT 794
Query: 471 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
+ + + D G +S + ++D DGL G ++ ++
Sbjct: 795 ENIDLSDQNS--RFDSG--SKSFRRSTNKAEHFRIDADGLPSVGQKLYPDEPYCS----- 845
Query: 531 SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RFVKVRVRSVRIPQIGDK 589
DE + +R+ +R + ++ +VD V + + + +R R R P IGDK
Sbjct: 846 IYDEVTNK-TRHMKR------KGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDK 898
Query: 590 FSSRHGQKGTVGMTYTQEDMPWT-VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
FSSRHGQKG + DMP+ V G+ PD+I+NPHA PSRMTI L+E I K +
Sbjct: 899 FSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLH 958
Query: 649 GKEGDATPFTDVT--------------VDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
GK DATPF D VD++ L + G+ G ET+Y+G+ G L
Sbjct: 959 GKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCE 1018
Query: 695 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 754
IF+GP YYQRL+HMV DK R G V LT QP +GR R GG+RFGEMERD ++AHGAS
Sbjct: 1019 IFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGAS 1078
Query: 755 HFLKERLFDQSDAYRVHVCEHCGLIAIANL 784
+ L +RL SD + VC CG + +++
Sbjct: 1079 YLLHDRLHTSSDHHIADVCSLCGSLLTSSV 1108
Score = 101 (40.6 bits), Expect = 1.7e-83, Sum P(3) = 1.7e-83
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 116 RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KLAKPRQLHNSQWGMMCPAETPEGQACG 174
RAG + RL + LS R ++ G + R+L WG +CP TP+G CG
Sbjct: 452 RAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCG 511
Query: 175 LVKNLALMVYIT 186
L+ ++ IT
Sbjct: 512 LLNHMTRTSRIT 523
Score = 50 (22.7 bits), Expect = 1.7e-83, Sum P(3) = 1.7e-83
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 791 CRGCKNKTDIVQVHIPYACKLLFQELMAMAI 821
C CK + V +PY + L EL +M I
Sbjct: 1134 CYSCKTSKGMETVAMPYVFRYLAAELASMNI 1164
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 520 (188.1 bits), Expect = 8.7e-79, Sum P(3) = 8.7e-79
Identities = 134/345 (38%), Positives = 184/345 (53%)
Query: 344 EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 403
E + + E+ + L AS+ PF DHNQSPRN YQ M KQ MGI N +
Sbjct: 924 EQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTN 983
Query: 404 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 463
Y + PQ PLV TR E P+G NA+VAI Y+GY+ ED++I+N++S DRG F
Sbjct: 984 KIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIF 1043
Query: 464 RSLFFRSYRDEEKKMGTLVKEDFGRPDR---SNTMGMRHGSYDK----LDDDGLAPPGTR 516
R+ +++ + +K+G FG R +N ++ +Y+ L+ DGL P +
Sbjct: 1044 RTHIYKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLNKDGL--PCVQ 1101
Query: 517 VSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
I + +P+ +G + T + S R+ VD V + N + V
Sbjct: 1102 QK-----ITEGSPLYSYINKG--NELTTYE---SFRNHGEYFVDFVSIGKNNSN-QVAVV 1150
Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
++RS R PQ+GDKF+SRHGQKG V + QEDMP+ GI PDII NPH IPSRMTIG L
Sbjct: 1151 KLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPSRMTIGML 1210
Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNI--SKALHKCGYQMRGF 679
IE I GK A+ GK DATPF T + + CG ++GF
Sbjct: 1211 IESICGKAASLYGKRIDATPFRKYTQQKSFNNPWIDNCG--IKGF 1253
Score = 285 (105.4 bits), Expect = 8.7e-79, Sum P(3) = 8.7e-79
Identities = 70/184 (38%), Positives = 97/184 (52%)
Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
D +D +K L GY G E +Y+G G L A IF+G YYQRL+HM DK R
Sbjct: 1325 DEKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRT 1384
Query: 719 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
GPV LT QP +G+ + GG+R GEMERD +I+HG S + ER SD + VC CGL
Sbjct: 1385 GPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGL 1444
Query: 779 IAIANLKKNS----FECR--GCKNKTDIVQ--------VHIPYACKLLFQELMAMAIAPR 824
I ++ N+ + R G K+K + + + IPY + L EL+ + + R
Sbjct: 1445 ILSPIMQFNTTGKIMKGRSIGGKSKMAVCKSCDVSCKIIFIPYVIRYLLNELICLNVTIR 1504
Query: 825 MLTK 828
+ K
Sbjct: 1505 LNMK 1508
Score = 116 (45.9 bits), Expect = 8.7e-79, Sum P(3) = 8.7e-79
Identities = 41/166 (24%), Positives = 72/166 (43%)
Query: 25 RLLLCALGRRAEDDRDH-Y--GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 81
RL +L + +ED D Y N + + L +F KL R V Y ++ N
Sbjct: 477 RLNQISLSKSSEDINDSSYQDNNDYKNESKKKLKSIFINEKEKLFRSVDNYFKELY-NDN 535
Query: 82 DVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLTYASTLSHLRRLN- 139
+ L+ +S + + TGN N ++G + + +++ R ++
Sbjct: 536 YMFLENCKSFSNTSSAILFFFKTGNISSENLHYQQKSGWVIAADEINNLRLITNFRAIHR 595
Query: 140 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 185
++ K+ PR+L WG +CP TP+G CGL+ +LA +I
Sbjct: 596 GTFFQDVKVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHI 641
Score = 42 (19.8 bits), Expect = 9.5e-27, Sum P(3) = 9.5e-27
Identities = 19/90 (21%), Positives = 29/90 (32%)
Query: 446 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY-DK 504
+++ S + IDR + L + D + V D G S D
Sbjct: 827 SKDGSYKYEKHKIDRKLLKILDQKKNNDSDTNTDNYVSSSEYDTDSDYDYGYDSNSDGDS 886
Query: 505 LDDDGLAPPGTRVSGEDVIIGKTTPISQDE 534
+ +SG D + TT I DE
Sbjct: 887 KSNSNFDSKSDNISGSDNNMSTTTYIDSDE 916
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 520 (188.1 bits), Expect = 8.7e-79, Sum P(3) = 8.7e-79
Identities = 134/345 (38%), Positives = 184/345 (53%)
Query: 344 EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 403
E + + E+ + L AS+ PF DHNQSPRN YQ M KQ MGI N +
Sbjct: 924 EQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTN 983
Query: 404 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 463
Y + PQ PLV TR E P+G NA+VAI Y+GY+ ED++I+N++S DRG F
Sbjct: 984 KIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIF 1043
Query: 464 RSLFFRSYRDEEKKMGTLVKEDFGRPDR---SNTMGMRHGSYDK----LDDDGLAPPGTR 516
R+ +++ + +K+G FG R +N ++ +Y+ L+ DGL P +
Sbjct: 1044 RTHIYKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLNKDGL--PCVQ 1101
Query: 517 VSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
I + +P+ +G + T + S R+ VD V + N + V
Sbjct: 1102 QK-----ITEGSPLYSYINKG--NELTTYE---SFRNHGEYFVDFVSIGKNNSN-QVAVV 1150
Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
++RS R PQ+GDKF+SRHGQKG V + QEDMP+ GI PDII NPH IPSRMTIG L
Sbjct: 1151 KLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPSRMTIGML 1210
Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNI--SKALHKCGYQMRGF 679
IE I GK A+ GK DATPF T + + CG ++GF
Sbjct: 1211 IESICGKAASLYGKRIDATPFRKYTQQKSFNNPWIDNCG--IKGF 1253
Score = 285 (105.4 bits), Expect = 8.7e-79, Sum P(3) = 8.7e-79
Identities = 70/184 (38%), Positives = 97/184 (52%)
Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
D +D +K L GY G E +Y+G G L A IF+G YYQRL+HM DK R
Sbjct: 1325 DEKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRT 1384
Query: 719 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
GPV LT QP +G+ + GG+R GEMERD +I+HG S + ER SD + VC CGL
Sbjct: 1385 GPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGL 1444
Query: 779 IAIANLKKNS----FECR--GCKNKTDIVQ--------VHIPYACKLLFQELMAMAIAPR 824
I ++ N+ + R G K+K + + + IPY + L EL+ + + R
Sbjct: 1445 ILSPIMQFNTTGKIMKGRSIGGKSKMAVCKSCDVSCKIIFIPYVIRYLLNELICLNVTIR 1504
Query: 825 MLTK 828
+ K
Sbjct: 1505 LNMK 1508
Score = 116 (45.9 bits), Expect = 8.7e-79, Sum P(3) = 8.7e-79
Identities = 41/166 (24%), Positives = 72/166 (43%)
Query: 25 RLLLCALGRRAEDDRDH-Y--GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 81
RL +L + +ED D Y N + + L +F KL R V Y ++ N
Sbjct: 477 RLNQISLSKSSEDINDSSYQDNNDYKNESKKKLKSIFINEKEKLFRSVDNYFKELY-NDN 535
Query: 82 DVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLTYASTLSHLRRLN- 139
+ L+ +S + + TGN N ++G + + +++ R ++
Sbjct: 536 YMFLENCKSFSNTSSAILFFFKTGNISSENLHYQQKSGWVIAADEINNLRLITNFRAIHR 595
Query: 140 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 185
++ K+ PR+L WG +CP TP+G CGL+ +LA +I
Sbjct: 596 GTFFQDVKVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHI 641
Score = 42 (19.8 bits), Expect = 9.5e-27, Sum P(3) = 9.5e-27
Identities = 19/90 (21%), Positives = 29/90 (32%)
Query: 446 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY-DK 504
+++ S + IDR + L + D + V D G S D
Sbjct: 827 SKDGSYKYEKHKIDRKLLKILDQKKNNDSDTNTDNYVSSSEYDTDSDYDYGYDSNSDGDS 886
Query: 505 LDDDGLAPPGTRVSGEDVIIGKTTPISQDE 534
+ +SG D + TT I DE
Sbjct: 887 KSNSNFDSKSDNISGSDNNMSTTTYIDSDE 916
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 486 (176.1 bits), Expect = 7.1e-58, Sum P(3) = 7.1e-58
Identities = 135/421 (32%), Positives = 217/421 (51%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
+L G N +VA + GYN ED++++++ + F S+ Y + + L E+
Sbjct: 679 ELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIHIEEYECDARDT-KLGPEEIT 737
Query: 488 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE--AQ--------G 537
R D N +G + LD+ G+ G V D+++GK TP + E A+ G
Sbjct: 738 R-DIPN-VG--EDALKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFG 793
Query: 538 QASRYTRRDHSISLRHSETG-MVD-QVLLTTNADGLR-----FVKVRVRSVRIPQIGDKF 590
+ +R R D S+ + H E+G +VD +V N D L V+V + R +GDK
Sbjct: 794 EKAREVR-DTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRVYIAQKRKISVGDKM 852
Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
+ RHG KG V +EDMP+ +G +I++NP +PSRM IGQ++EC +G A +G
Sbjct: 853 AGRHGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPSRMNIGQILECHLGWAAKALGI 912
Query: 651 EGDATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
ATP F T ++I +AL K G G + +G TG + + +G Y +L H+V
Sbjct: 913 NV-ATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRTGEPFDSRVTVGYVYMLKLAHLV 971
Query: 710 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 769
DDKIH+R GP ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 972 DDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDD-- 1029
Query: 770 VHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
+ +K +G +I + +P + K+L +EL ++ + ++LT
Sbjct: 1030 ----------VVGRVKTYEAIVKG----ENIPEPGVPESFKVLIKELQSLGLDVKVLTDN 1075
Query: 830 D 830
D
Sbjct: 1076 D 1076
Score = 168 (64.2 bits), Expect = 7.1e-58, Sum P(3) = 7.1e-58
Identities = 52/163 (31%), Positives = 78/163 (47%)
Query: 21 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 80
Y I LL G+ DD DH GN+RL G LL FR+ ++ R VR + + +
Sbjct: 318 YTIRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQNQFRIGLARMERVVRE--RMTIQDA 375
Query: 81 KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 140
+ Q I + I + +K + +SQ +++ + L+H RRL++
Sbjct: 376 DSLTPQVLINTRPIVAAIKEFFGSSQ------------LSQFMDQTNPLAELTHKRRLSA 423
Query: 141 --PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
P G RE + R +H+S +G MCP ETPEG GL+ NL
Sbjct: 424 LGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGNL 466
Score = 65 (27.9 bits), Expect = 7.1e-58, Sum P(3) = 7.1e-58
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 333 NDLVQAR-----LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
+++V AR LH E + D ++ P + V S+IPF +H+ + R + M +
Sbjct: 524 DEMVNARHGSEILHVEPSKVD---FVDVSPKQVFSVATSLIPFLEHDDANRALMGANMQR 580
Query: 388 QAMGIYVT 395
QA+ + T
Sbjct: 581 QAVPLIRT 588
Score = 38 (18.4 bits), Expect = 2.7e-44, Sum P(3) = 2.7e-44
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 197 FLEEWGTENFEEISP 211
FL+E E F EISP
Sbjct: 37 FLDEGLREVFREISP 51
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 451 (163.8 bits), Expect = 8.6e-50, Sum P(3) = 8.6e-50
Identities = 127/423 (30%), Positives = 214/423 (50%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
+L G N +V + GYN ED++IM++ + + S+ Y E + L E+
Sbjct: 751 ELALGRNVLVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESEARDT-KLGPEEIT 809
Query: 488 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDEAQ--------G 537
R D N +G + LD+ G+ G V D+++GK TP +++ A+ G
Sbjct: 810 R-DIPN-VG--EDALRNLDERGIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFG 865
Query: 538 QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF---VKVRVRS--VRIPQI--GDKF 590
+ +R R D S+ + H G++ V + DG V VR+ V+ +I GDK
Sbjct: 866 EKAREVR-DTSLRVPHGGGGIILDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKM 924
Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
+ RHG KG + +EDMP+ +G DI++NP +PSRM IGQ++E +G A ++G
Sbjct: 925 AGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGI 984
Query: 651 EGDATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
ATP F +++ + + G +Y+G TG + +G Y +L HMV
Sbjct: 985 H-IATPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIKLAHMV 1043
Query: 710 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 769
DDK+H+R GP ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1044 DDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDD-- 1101
Query: 770 VHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
I +K +G ++ + +P + K+L +EL ++ + +M++ +
Sbjct: 1102 ----------VIGRVKTYEAIVKG----ENVPEPGVPESFKVLIKELQSLGMDVKMMSSD 1147
Query: 830 DTK 832
DT+
Sbjct: 1148 DTE 1150
Score = 148 (57.2 bits), Expect = 8.6e-50, Sum P(3) = 8.6e-50
Identities = 45/148 (30%), Positives = 72/148 (48%)
Query: 37 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
DD DH GN+RL G LL FR+ ++ R VR + + + + Q I + + +
Sbjct: 398 DDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMS--IQDTNAITPQALINIRPVIA 455
Query: 97 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPR 152
+K + +SQ +++ + L+H RRL++ P G RE + R
Sbjct: 456 AIKEFFGSSQ------------LSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVR 503
Query: 153 QLHNSQWGMMCPAETPEGQACGLVKNLA 180
+H S +G MCP ETPEG GL+ +L+
Sbjct: 504 DVHYSHYGRMCPIETPEGPNIGLINSLS 531
Score = 48 (22.0 bits), Expect = 8.6e-50, Sum P(3) = 8.6e-50
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 334 DLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
D+V AR E + + ++ P ++ + IPF +++ S R + M +QA+
Sbjct: 590 DIV-ARFRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAV 647
Score = 38 (18.4 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 197 FLEEWGTENFEEISP 211
FL+E E F++ISP
Sbjct: 40 FLDEGLREMFQDISP 54
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 280 (103.6 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 83/262 (31%), Positives = 132/262 (50%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--EKKMGTLVKED 485
+L G N +VA + G+N ED++I+++ + F S+ + E + K+G E+
Sbjct: 721 ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHELEAHDTKLGG---EE 777
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--------- 536
R D N +G S +LD+DG+ G V +D+++GK TP + E
Sbjct: 778 ITR-DIPN-VGEE--SLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKLLRAI 833
Query: 537 -GQASRYTRRDHSISLRHSETGMVDQVLLTT--NADGL-----RFVKVRVRSVRIPQIGD 588
G+ +R + D S+ + H E G V V + + N D L ++V+V V R +GD
Sbjct: 834 FGEKAREVK-DTSLRMPHGEWGKVINVRVFSRENGDDLPARVNKWVQVWVAQKRKVSVGD 892
Query: 589 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
K + RHG KG + + EDMP+ +G D+++NP +PSRM +GQ++E +G A H+
Sbjct: 893 KLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGW-AGHL 951
Query: 649 GKEGDATPFTDVTVDN-ISKAL 669
ATP D D I AL
Sbjct: 952 LGFRVATPVFDGADDTAIEDAL 973
Score = 194 (73.4 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 49/152 (32%), Positives = 84/152 (55%)
Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
G + +G TG + +G Y +L H+V+DK+H+R GP ++++QP G+++ GG
Sbjct: 1067 GKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGG 1126
Query: 738 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 797
RFGEME M A+G +H L+E L +SD IA K ++E K +
Sbjct: 1127 QRFGEMEVWAMYAYGTAHNLQEMLTIKSDD-------------IAGRAK-AYESI-VKGE 1171
Query: 798 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
D++Q +P + K+L +EL ++ +A ++ +E
Sbjct: 1172 -DVIQPGVPESFKVLVKELQSLGLAVEVINEE 1202
Score = 140 (54.3 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 47/163 (28%), Positives = 80/163 (49%)
Query: 22 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 81
II R+++ G+ DD DH GN+R+ G L+ FR+ +L R R + + N +
Sbjct: 312 IIKRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLERVARERMS--IVNLE 369
Query: 82 DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS- 140
V + + + S +K G++ +SQ +++ + +++ RRL++
Sbjct: 370 VVTPSALVNIRPVVSAVKEFFG----------GSQ--LSQFMDQTNPLAEITNKRRLSAM 417
Query: 141 -PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
P G RE R +H S +G +CP ETPEG GL+ +LA
Sbjct: 418 GPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLA 460
Score = 67 (28.6 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 333 NDLVQARLHPEEAYA----DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
++ ++ARL E Y + + ++ P I V AS+IPF +H+ + R + M +Q
Sbjct: 566 DERIEARL--AERYVIEPPEKIDYMDVSPKQIFSVAASLIPFLEHDDANRALMGANMQRQ 623
Query: 389 AM 390
A+
Sbjct: 624 AV 625
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 222 (83.2 bits), Expect = 7.4e-45, Sum P(5) = 7.4e-45
Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 654 ATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
+TP F V ++ SK M G +Y+G TG ++ + +G Y +L H+VD+K
Sbjct: 1214 STPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMYMLKLHHLVDEK 1273
Query: 713 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
+H+R GP ++T+QP G++ GG RFGEME + A+GA+H L+E L +SD
Sbjct: 1274 VHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTIKSD 1327
Score = 167 (63.8 bits), Expect = 7.4e-45, Sum P(5) = 7.4e-45
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
++ VKV + + R ++GDK + RHG KG V + DMP+ G + DI +NP +PSR
Sbjct: 1076 IKLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSR 1135
Query: 631 MTIGQLIECIMGKVAAHMGKE 651
M IGQ++E +G V +G +
Sbjct: 1136 MNIGQILESHLGLVGLRLGDQ 1156
Score = 149 (57.5 bits), Expect = 7.4e-45, Sum P(5) = 7.4e-45
Identities = 51/156 (32%), Positives = 75/156 (48%)
Query: 32 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR-AYVQKCVDNGKDVNLQFAIK 90
G+ DDRDH GN+R+ G LL + K+ + +R + D K + I
Sbjct: 451 GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDL-IN 509
Query: 91 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 150
K IT+ + TG GQ +SQ +++ S ++H RRL S +G EG L K
Sbjct: 510 PKMITTTI-IEFFTG--GQ---------LSQFMDQTNPLSEVTHKRRL-SALG-EGGLVK 555
Query: 151 PR------QLHNSQWGMMCPAETPEGQACGLVKNLA 180
R +H + +G +CP ETPEGQ GL+ L+
Sbjct: 556 ERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLS 591
Score = 104 (41.7 bits), Expect = 7.4e-45, Sum P(5) = 7.4e-45
Identities = 26/102 (25%), Positives = 52/102 (50%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
+L G NA++A ++GYN ED++++++ I F S+ E +++ ++E
Sbjct: 804 ELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKDGIEEI-- 861
Query: 488 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
D N ++ LD+ G+A GT + +++GK +P
Sbjct: 862 TKDIPN---VKEEDVAHLDESGIAKIGTHIKPGMILVGKVSP 900
Score = 68 (29.0 bits), Expect = 7.4e-45, Sum P(5) = 7.4e-45
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 334 DLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
+ V+AR E A + ++ +++GV AS+IPF +H+ + R S M +QA+
Sbjct: 647 EFVEARQDGETILARREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAV 705
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 195 (73.7 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 44/114 (38%), Positives = 65/114 (57%)
Query: 654 ATPFTDVTVDN-ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
A P + D+ IS L + G +Y+G G + + +G Y +L H+VDDK
Sbjct: 1211 AAPVFEGPKDSQISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLKLHHLVDDK 1270
Query: 713 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
IH+R GP ++T+QP G+S GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1271 IHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1324
Score = 161 (61.7 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 38/103 (36%), Positives = 57/103 (55%)
Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
L VKV V Q GDK + RHG KG + EDMP+ +G DII+N +PSR
Sbjct: 1076 LCIVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSR 1135
Query: 631 MTIGQLIECIMGKVAAHMGKE-GDATPFTD-VTVDNISKALHK 671
M +GQ++E +G + ++GK+ G D +TV ++ L++
Sbjct: 1136 MNVGQILETHLGWASVNLGKKIGHILDNLDELTVSHLRNFLYQ 1178
Score = 159 (61.0 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 49/170 (28%), Positives = 83/170 (48%)
Query: 21 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDN 79
++I +L+L G + DD DH GN+R+ G + FR+ +L R + Y+ DN
Sbjct: 451 HVIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFIENQFRIGILRLERMIMDYMSSVNFDN 510
Query: 80 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 139
+ + K + + LK ++ +SQ +++ S ++H RRL+
Sbjct: 511 AMPCDF---VNPKVLATVLKDFFSSSQ------------LSQFMDQTNPLSEVTHKRRLS 555
Query: 140 S--PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 185
+ P G RE + R +H + +G +CP ETPEGQ GL+ +LA+ I
Sbjct: 556 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYARI 605
Score = 121 (47.7 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 30/102 (29%), Positives = 48/102 (47%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
+L G N +VA + GYN EDS++++ + + F S+ + + TL E
Sbjct: 816 ELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFTSIHIEEFECVVRDT-TLGPEKIM 874
Query: 488 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
R + + S LDD G+ G VS D+++GK TP
Sbjct: 875 R----SVPDINEDSLSHLDDVGIVNVGAEVSAGDILVGKVTP 912
Score = 67 (28.6 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
+ ++ P I+ V AS+IPF ++N + R S M +QA+
Sbjct: 676 YIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 714
Score = 47 (21.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
+R +SL G+ + +L T D +R+VK V +P + D+F
Sbjct: 224 KRKLPVSLLLRALGLSNNDILDTFYDKIRYVKSEKGWV-VPFVADRF 269
Score = 37 (18.1 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 457 SID--RGFFRSLFFRSYRDEEKKMGTLVKED 485
S+D + FF LFF R + +G + D
Sbjct: 401 SLDTIKAFFDGLFFEKERYDLSTVGRIKLND 431
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 249 (92.7 bits), Expect = 1.1e-43, Sum P(4) = 1.1e-43
Identities = 72/237 (30%), Positives = 115/237 (48%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK--KMGTLVKED 485
++ G N +VAI + G+N ED++I++ ++ S+ + + + K+G E+
Sbjct: 703 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGA---EE 759
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--------- 536
R D N + LD+ G+ G V D+++GK TP + E
Sbjct: 760 ITR-DIPN---VSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAI 815
Query: 537 -GQASRYTRRDHSISLRHSETGMVDQVLLTTNAD------GLR-FVKVRVRSVRIPQIGD 588
G+ +R R D S+ + H E+G V + + + D G+ V+V V R GD
Sbjct: 816 FGEKAREVR-DTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGD 874
Query: 589 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
K + RHG KG +G EDMP+ +G DII+N H +P RM IGQ++E +G VA
Sbjct: 875 KLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVA 931
Score = 191 (72.3 bits), Expect = 1.1e-43, Sum P(4) = 1.1e-43
Identities = 42/99 (42%), Positives = 62/99 (62%)
Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
G T+++G +G + +G Y +L H+VDDKIH+R GP ++T+QP G+++ GG
Sbjct: 997 GKSTLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1056
Query: 738 LRFGEMERDCMIAHGASHFLKERLFDQSD--AYRVHVCE 774
RFGEME M A+GA++ L+E L +SD RV V E
Sbjct: 1057 QRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE 1095
Score = 148 (57.2 bits), Expect = 1.1e-43, Sum P(4) = 1.1e-43
Identities = 48/155 (30%), Positives = 75/155 (48%)
Query: 37 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
DD DH+GN+RL G L+ R+ ++ R VR + + + + Q I + + +
Sbjct: 359 DDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRE--RMTTQDVEAITPQTLINIRPVVA 416
Query: 97 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPR 152
+K T +SQ +++ S L+H RRL++ P G RE + R
Sbjct: 417 AIKEFFGTSQ------------LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVR 464
Query: 153 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 187
+H S +G MCP ETPEG GL+ +L+ VY V
Sbjct: 465 DVHPSHYGRMCPIETPEGPNIGLIGSLS--VYARV 497
Score = 61 (26.5 bits), Expect = 1.1e-43, Sum P(4) = 1.1e-43
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
AD + ++ P ++ V ++IPF +H+ + R + M +QA+
Sbjct: 564 ADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 607
>UNIPROTKB|F8VRE2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR015712
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022248 ProteinModelPortal:F8VRE2
SMR:F8VRE2 Ensembl:ENST00000551370 ArrayExpress:F8VRE2 Bgee:F8VRE2
Uniprot:F8VRE2
Length = 676
Score = 468 (169.8 bits), Expect = 1.7e-43, Sum P(2) = 1.7e-43
Identities = 109/304 (35%), Positives = 166/304 (54%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 317 ILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 375
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 376 LFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 435
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 436 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDP 233
LALM +IT PI++ G E+ EE+S P +F+NG +G+ RD
Sbjct: 496 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDH 552
Query: 234 EMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ LV T +N V + ++ + + I +D GR RP IV+KQ+ + + +
Sbjct: 553 KKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHME 612
Query: 294 ALQQ 297
L Q
Sbjct: 613 ELAQ 616
Score = 52 (23.4 bits), Expect = 1.7e-43, Sum P(2) = 1.7e-43
Identities = 18/77 (23%), Positives = 40/77 (51%)
Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH--FRQLPAGINAIVAIACYSGYNQED 449
+Y+++ R+ Y++ QKP VT + ME L +R ++ ++ Y N+E+
Sbjct: 583 VYISSDGGRL-CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHE--SLVEYLDVNEEN 639
Query: 450 --SVIMNQSSIDRGFFR 464
++ + + +I++ F R
Sbjct: 640 DCNIALYEHTINKTFSR 656
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 256 (95.2 bits), Expect = 3.4e-43, Sum P(4) = 3.4e-43
Identities = 75/246 (30%), Positives = 119/246 (48%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK--KMGTLVKED 485
++ G N +VAI + G+N ED++I++ ++ S+ + + + K+G E+
Sbjct: 712 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGA---EE 768
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--------- 536
R D N + LD+ G+ G V D+++GK TP + E
Sbjct: 769 ITR-DIPN---ISDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAI 824
Query: 537 -GQASRYTRRDHSISLRHSETGMVDQVLLTTNAD------GLR-FVKVRVRSVRIPQIGD 588
G+ +R R D S+ + H E+G V + + + D G+ V+V V R GD
Sbjct: 825 FGEKAREVR-DTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGD 883
Query: 589 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
K + RHG KG +G EDMP+ +G DII+N H +P RM IGQ++E +G AH
Sbjct: 884 KLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGW-CAHS 942
Query: 649 GKEGDA 654
G + DA
Sbjct: 943 GWKVDA 948
Score = 186 (70.5 bits), Expect = 3.4e-43, Sum P(4) = 3.4e-43
Identities = 41/99 (41%), Positives = 61/99 (61%)
Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
G +++G +G + +G Y +L H+VDDKIH+R GP ++T+QP G+++ GG
Sbjct: 1006 GKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1065
Query: 738 LRFGEMERDCMIAHGASHFLKERLFDQSD--AYRVHVCE 774
RFGEME M A+GA++ L+E L +SD RV V E
Sbjct: 1066 QRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE 1104
Score = 148 (57.2 bits), Expect = 3.4e-43, Sum P(4) = 3.4e-43
Identities = 48/155 (30%), Positives = 75/155 (48%)
Query: 37 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
DD DH+GN+RL G L+ R+ ++ R VR + + + + Q I + + +
Sbjct: 368 DDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRE--RMTTQDVEAITPQTLINIRPVVA 425
Query: 97 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPR 152
+K T +SQ +++ S L+H RRL++ P G RE + R
Sbjct: 426 AIKEFFGTSQ------------LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVR 473
Query: 153 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 187
+H S +G MCP ETPEG GL+ +L+ VY V
Sbjct: 474 DVHPSHYGRMCPIETPEGPNIGLIGSLS--VYARV 506
Score = 54 (24.1 bits), Expect = 3.4e-43, Sum P(4) = 3.4e-43
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
+ ++ P ++ V ++IPF +H+ + R + M +QA+
Sbjct: 578 YMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 616
Score = 47 (21.6 bits), Expect = 8.6e-32, Sum P(3) = 8.6e-32
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 119 VSQVLNRLTYASTLSHL-RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 177
VS + LT H+ + NSPI +G+ +PR L + G + P + +
Sbjct: 524 VSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGEV--EYVPSSEVDYMDV 581
Query: 178 NLALMVYITVGSAAYPILE 196
+ MV +V +A P LE
Sbjct: 582 SPRQMV--SVATAMIPFLE 598
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 197 (74.4 bits), Expect = 8.2e-43, Sum P(5) = 8.2e-43
Identities = 47/124 (37%), Positives = 70/124 (56%)
Query: 654 ATPFTDVTVD-NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
A P + D IS+ L G +Y+G +G++ + +G Y +L H+VDDK
Sbjct: 1215 AAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVGYIYMLKLHHLVDDK 1274
Query: 713 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY--RV 770
IH+R GP ++T+QP G+S GG RFGEME + A+GA++ L+E L +SD RV
Sbjct: 1275 IHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDIVGRV 1334
Query: 771 HVCE 774
+ E
Sbjct: 1335 RIYE 1338
Score = 161 (61.7 bits), Expect = 8.2e-43, Sum P(5) = 8.2e-43
Identities = 55/193 (28%), Positives = 92/193 (47%)
Query: 21 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDN 79
++I +L+L G DD DH GN+R+ G + FR+ +L R + Y+ DN
Sbjct: 452 HVIKKLVLLPDGEGVVDDIDHLGNRRVRSVGEFIENQFRVGILRLERMIMDYMSSVNFDN 511
Query: 80 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 139
V F + K + + LK ++ +SQ +++ S ++H RRL+
Sbjct: 512 A--VPCDF-VNPKILATVLKDFFSSSQ------------LSQFMDQTNPLSEVTHKRRLS 556
Query: 140 S--PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT-VGSAAYPI 194
+ P G RE + R +H + +G +CP ETPEGQ GL+ +LA+ I G P
Sbjct: 557 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIESPY 616
Query: 195 LEFLEEWGTENFE 207
+ ++ T++ E
Sbjct: 617 RKVIDGVVTDSVE 629
Score = 154 (59.3 bits), Expect = 8.2e-43, Sum P(5) = 8.2e-43
Identities = 34/79 (43%), Positives = 44/79 (55%)
Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
L VKV V Q GDK + RHG KG + EDMP +G DII+N +PSR
Sbjct: 1078 LTIVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGVPSR 1137
Query: 631 MTIGQLIECIMGKVAAHMG 649
M IGQ++E +G A ++G
Sbjct: 1138 MNIGQILETHLGWAAVNLG 1156
Score = 113 (44.8 bits), Expect = 8.2e-43, Sum P(5) = 8.2e-43
Identities = 33/104 (31%), Positives = 48/104 (46%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
+L G N +VA + GYN EDS++++ + R F S+ + + L E
Sbjct: 817 ELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFTSIHIEEFECVVRDT-PLGPEKIM 875
Query: 488 R--PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
R PD N + H LDD G+ G VS V++GK TP
Sbjct: 876 RSVPD-VNEESLSH-----LDDVGIVNIGAEVSAGSVLVGKVTP 913
Score = 67 (28.6 bits), Expect = 8.2e-43, Sum P(5) = 8.2e-43
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
+ ++ P I+ V AS+IPF ++N + R S M +QA+
Sbjct: 677 YIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 715
Score = 40 (19.1 bits), Expect = 1.7e-30, Sum P(5) = 1.7e-30
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 256 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 287
V+++ KE++ D G R + +++Q + I
Sbjct: 117 VQEVSFKEVKYVVDEGTLERSVKYMKEQEVSI 148
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 198 (74.8 bits), Expect = 4.0e-42, Sum P(5) = 4.0e-42
Identities = 40/110 (36%), Positives = 64/110 (58%)
Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
F T + I + L G +Y+G TG++ + +G Y +L H+VDDK+H+R
Sbjct: 1220 FDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYMLKLNHLVDDKMHAR 1279
Query: 717 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1280 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329
Score = 169 (64.5 bits), Expect = 4.0e-42, Sum P(5) = 4.0e-42
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
++ VKV + R Q GDK + RHG KG + EDMP+ +G DI++NP +PSR
Sbjct: 1082 IKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSR 1141
Query: 631 MTIGQLIECIMGKVAAHMGKE 651
M IGQ++E +G A +GK+
Sbjct: 1142 MNIGQVLETHLGWAAKGLGKK 1162
Score = 132 (51.5 bits), Expect = 4.0e-42, Sum P(5) = 4.0e-42
Identities = 48/185 (25%), Positives = 87/185 (47%)
Query: 32 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNGKDVNLQFAIK 90
G+ DD DH GN+R+ G + FR+ ++ R V+ + V+N +L +
Sbjct: 459 GKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKDRLSLADVENLMPQDL---VN 515
Query: 91 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REG 146
AK +++ +K + +SQ +++ S ++H RR+++ P G RE
Sbjct: 516 AKPVSAAIKEFFGSSQ------------LSQFMDQNNPLSEITHKRRVSALGPGGLTRER 563
Query: 147 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT-VGSAAYPILEFLEEWGTEN 205
+ R +H + +G +CP ETPEG GL+ +LA+ G P + ++ T+
Sbjct: 564 AGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFLETPYRKVVDRVVTDE 623
Query: 206 FEEIS 210
E +S
Sbjct: 624 TEYLS 628
Score = 112 (44.5 bits), Expect = 4.0e-42, Sum P(5) = 4.0e-42
Identities = 27/104 (25%), Positives = 54/104 (51%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 485
+L G N +VA ++GYN EDS+++++ ++ F ++ + + + K+G E+
Sbjct: 815 ELALGQNLLVAFMPWNGYNFEDSILISERLVEEDRFTTIHIQEFTCVARDTKLGP---EE 871
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
S+ + + KLD+ G+ G V+ D+++GK TP
Sbjct: 872 I----TSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGKVTP 911
Score = 74 (31.1 bits), Expect = 4.0e-42, Sum P(5) = 4.0e-42
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 333 NDLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
+DL+ R E D + ++ P I+ V A++IPF +H+ + R S M +QA+
Sbjct: 652 DDLISCRYKGEFTLTTPDKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAV 711
Score = 44 (20.5 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 365 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH- 423
++ I +P+ ++ N +GK+ + I T Y +Y + QK + + ++
Sbjct: 11 SATISYPEKRRARVN-----LGKREVEILKTPYLLETQIESYRKFL-QKDIAAEKREDNG 64
Query: 424 LHFRQLPAGINAIVAIACYSGY 445
LH A ++ I YSGY
Sbjct: 65 LH-----AAFKSVFPITSYSGY 81
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 219 (82.2 bits), Expect = 7.2e-42, Sum P(5) = 7.2e-42
Identities = 48/124 (38%), Positives = 75/124 (60%)
Query: 654 ATPFTDVTVD-NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
ATP D + +++ AL + G+ G +++G TG + + +G Y +L H+VDDK
Sbjct: 1215 ATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFARPVTVGIKYLLKLHHLVDDK 1274
Query: 713 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD--AYRV 770
IH+R GP ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD A R
Sbjct: 1275 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT 1334
Query: 771 HVCE 774
V E
Sbjct: 1335 KVYE 1338
Score = 165 (63.1 bits), Expect = 7.2e-42, Sum P(5) = 7.2e-42
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
++ VKV + R Q GDK + RHG KG + EDMP+ +G D +NP +PSR
Sbjct: 1079 MKMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSR 1138
Query: 631 MTIGQLIECIMGKVAAHMGKEGD 653
M +GQ++E MG A +G D
Sbjct: 1139 MNVGQILETHMGWAARGLGLNVD 1161
Score = 133 (51.9 bits), Expect = 7.2e-42, Sum P(5) = 7.2e-42
Identities = 44/154 (28%), Positives = 74/154 (48%)
Query: 32 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNGKDVNLQFAIK 90
G+ DD DH GN+R+ G L+ +R+ ++ R ++ + +D V Q I
Sbjct: 458 GKGDIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVEIDT---VMPQDLIN 514
Query: 91 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REG 146
AK + ++ + +SQ +++ S ++H RRL++ P G RE
Sbjct: 515 AKPAAAAVREFFGSSQ------------LSQFMDQTNPLSEVTHKRRLSALGPGGLTRER 562
Query: 147 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
+ R +H + +G MCP ETPEG GL+ +LA
Sbjct: 563 AGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLA 596
Score = 101 (40.6 bits), Expect = 7.2e-42, Sum P(5) = 7.2e-42
Identities = 30/104 (28%), Positives = 51/104 (49%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 485
+L G N +VA ++GYN EDS+++++ F S+ + + K+G E+
Sbjct: 812 ELALGKNVVVAFMPWNGYNYEDSILISERIARDDVFTSIHIEEFEVAARDTKLGP---EE 868
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
R D N +G + LD+ G+ G V D+++GK TP
Sbjct: 869 ITR-DIPN-VGEE--ALRNLDEAGIVYIGAEVQPGDILVGKITP 908
Score = 63 (27.2 bits), Expect = 7.2e-42, Sum P(5) = 7.2e-42
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 333 NDLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
N+LV R + A ++ ++ P ++ V AS+IPF +++ + R S M +QA+
Sbjct: 651 NELVNTRQAGDYTLAPMESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAV 710
Score = 40 (19.1 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 360 ILGVCASIIPFPDHNQS 376
I+GV S+ P D N++
Sbjct: 53 IMGVFQSVFPIKDFNET 69
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 192 (72.6 bits), Expect = 3.3e-40, Sum P(5) = 3.3e-40
Identities = 44/114 (38%), Positives = 66/114 (57%)
Query: 654 ATPFTDVTVDNISKALHKCG-YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
ATP D + K L K G G +Y+G TG + + +G Y +L H+VDDK
Sbjct: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242
Query: 713 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 169 (64.5 bits), Expect = 3.3e-40, Sum P(5) = 3.3e-40
Identities = 44/133 (33%), Positives = 67/133 (50%)
Query: 524 IGKTTPISQDEAQGQASRYTRRDHSISLR-HSETGMVDQVLLTTNADG-LRFVKVRVRSV 581
+G T Q++ + A +Y H + ++ + Q A G L+ VKV +
Sbjct: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG--DDLAPGVLKIVKVYLAVK 1057
Query: 582 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 641
R Q GDK + RHG KG + EDMP+ G DI++NP +PSRM IGQ++E +
Sbjct: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117
Query: 642 GKVAAHMGKEGDA 654
G A +G + +A
Sbjct: 1118 GMAAKGIGDKINA 1130
Score = 133 (51.9 bits), Expect = 3.3e-40, Sum P(5) = 3.3e-40
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 22 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 81
++ +L+ G+ DD DH GN+R+ G + FR+ L R RA ++
Sbjct: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV---GLVRVERAVKERLSLGDL 484
Query: 82 DVNL-QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 140
D + Q I AK I++ +K + +SQ +++ S ++H RR+++
Sbjct: 485 DTLMPQDMINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEITHKRRISA 532
Query: 141 --PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 181
P G RE + R +H + +G +CP ETPEG GL+ +L++
Sbjct: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577
Score = 109 (43.4 bits), Expect = 3.3e-40, Sum P(5) = 3.3e-40
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 485
+L G N VA ++GYN EDS+++++ + F ++ + + K+G E+
Sbjct: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP---EE 849
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
D N +G + KLD+ G+ G V+G D+++GK TP
Sbjct: 850 I-TADIPN-VG--EAALSKLDESGIVYIGAEVTGGDILVGKVTP 889
Score = 63 (27.2 bits), Expect = 3.3e-40, Sum P(5) = 3.3e-40
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 334 DLVQARLHPEEAY--ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
DLV R E + D + ++ ++ V AS+IPF +H+ + R + M +QA+
Sbjct: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 198 (74.8 bits), Expect = 4.3e-40, Sum P(5) = 4.3e-40
Identities = 43/114 (37%), Positives = 67/114 (58%)
Query: 654 ATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
A+P F + + I L K G+ ++Y+G +G + +G Y +L H+VDDK
Sbjct: 1208 ASPVFEGASEEQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTVGVMYVLKLHHLVDDK 1267
Query: 713 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
IH+R GP ++T+QP G+++ GG R GEME M A+GA++ L+E L +SD
Sbjct: 1268 IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSD 1321
Score = 170 (64.9 bits), Expect = 4.3e-40, Sum P(5) = 4.3e-40
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
++ VKV + R Q+GDK + RHG KG V +EDMP+ +G +I++NP +PSR
Sbjct: 1075 IKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSR 1134
Query: 631 MTIGQLIECIMGKVAAHMG 649
M +GQ++E +G A +G
Sbjct: 1135 MNVGQILETHLGWAAKGIG 1153
Score = 130 (50.8 bits), Expect = 4.3e-40, Sum P(5) = 4.3e-40
Identities = 46/165 (27%), Positives = 83/165 (50%)
Query: 22 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV--RAYVQKCVDN 79
++ L+ G+ DD DH GN+R+ G LL +R+ ++ R + R +Q+ V+N
Sbjct: 436 VVRYLIDLKNGKGTIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQE-VEN 494
Query: 80 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 139
+L I +K +++ +K + +SQ +++ S ++H RRL+
Sbjct: 495 LMPHDL---INSKPVSAVVKEFFGSSQ------------LSQFMDQTNPLSEVTHKRRLS 539
Query: 140 S--PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
+ P G RE + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLS 584
Score = 104 (41.7 bits), Expect = 4.3e-40, Sum P(5) = 4.3e-40
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 485
+L G N +VA + GYN EDS+++++ + + S+ + + K+G KE+
Sbjct: 801 ELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEFECVARDTKLG---KEE 857
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
S+ + + LD+ G+ G V D+++GK TP
Sbjct: 858 I----TSDIPNLGEEALKDLDESGIIRIGAEVKPGDILVGKITP 897
Score = 63 (27.2 bits), Expect = 4.3e-40, Sum P(5) = 4.3e-40
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 333 NDLVQARLHPEE--AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
N+ V AR E + D ++ P ++ V AS+IPF +++ + R S M +QA+
Sbjct: 639 NEYVSARKSGEFLLVHRDELELMDVAPMQLVSVAASLIPFLENDDANRALMGSNMQRQAV 698
Score = 50 (22.7 bits), Expect = 6.0e-32, Sum P(5) = 6.0e-32
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 248 DVNTEVGVVRDIR-LKELRIYTDYGRCSRPLFIVEKQRLLIKKRD-IIALQQRESPEDGG 305
DVN + GV R IR +KE +Y +G PL + E +I + +I Q SP G
Sbjct: 110 DVNKDTGV-RSIRDIKEQEVY--FGEI--PL-MTENGTFIINGTERVIVSQLHRSP--GV 161
Query: 306 WHD 308
++D
Sbjct: 162 FYD 164
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 199 (75.1 bits), Expect = 5.1e-40, Sum P(5) = 5.1e-40
Identities = 44/113 (38%), Positives = 64/113 (56%)
Query: 654 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
A+ F D I + L G G E +Y+G TG + + +G Y +L H+V+DKI
Sbjct: 1183 ASVFEGPKTDEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHLVNDKI 1242
Query: 714 HSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
H+R G ++T+QP G+S GG RFGEME + A+GA+ L+E L +SD
Sbjct: 1243 HARSIGSYSLITQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIKSD 1295
Score = 177 (67.4 bits), Expect = 5.1e-40, Sum P(5) = 5.1e-40
Identities = 38/85 (44%), Positives = 50/85 (58%)
Query: 568 ADG-LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
A G L VKV V Q GDK S RHG KG + EDMP+ +G DII+NP
Sbjct: 1045 AQGVLMVVKVFVAVKHTLQPGDKMSGRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLG 1104
Query: 627 IPSRMTIGQLIECIMGKVAAHMGKE 651
+PSRM +GQ++E +G A ++GK+
Sbjct: 1105 VPSRMNVGQILETHLGWAAYNLGKK 1129
Score = 119 (46.9 bits), Expect = 5.1e-40, Sum P(5) = 5.1e-40
Identities = 38/153 (24%), Positives = 74/153 (48%)
Query: 37 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
DD DH GN+R+ G + FR+ ++ + + V+N + + + I S
Sbjct: 439 DDIDHLGNRRVRSVGEFMDNQFRIGLVRMAKVI-------VENMATADFDTVMPCEMINS 491
Query: 97 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG-REGKLA-KPR 152
+ ++ + ++A +SQ +++ S ++H RR+++ P G G+ + R
Sbjct: 492 KILGAVIR-EFFMSSA------LSQFMDQTNPLSEITHKRRISALGPGGLNRGRAGFEVR 544
Query: 153 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 185
+H + +G +C ETPEG GL+ +LA+ I
Sbjct: 545 DVHTTHYGRICATETPEGATIGLINSLAIYAKI 577
Score = 109 (43.4 bits), Expect = 5.1e-40, Sum P(5) = 5.1e-40
Identities = 33/104 (31%), Positives = 50/104 (48%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
+L G N +VA + GYN EDSV+++ + + F S+ + + L E+
Sbjct: 785 ELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVRDT-RLGPEEIT 843
Query: 488 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
R D S G+ LD+ G+A G V DV++GK TP S
Sbjct: 844 R-DVS---GVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTPKS 883
Score = 60 (26.2 bits), Expect = 5.1e-40, Sum P(5) = 5.1e-40
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 333 NDLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
+DLV R + E + ++ I+ V AS+IPF +++ + R S M +QA+
Sbjct: 627 DDLVYCRRNYENVFIPRSEVQFADVSAKQIVSVAASLIPFLENDDANRALMGSNMQRQAV 686
Score = 44 (20.5 bits), Expect = 2.1e-38, Sum P(5) = 2.1e-38
Identities = 17/71 (23%), Positives = 27/71 (38%)
Query: 289 KRDIIALQQRESPEDG-GWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYA 347
+R + L E+P G G VA+G N +V A ++ +
Sbjct: 682 QRQAVPLIMPEAPLVGTGMEGYVARGSGAVIVAKRAGVVQYIDARN-IVVASESKDDFWI 740
Query: 348 DTYTHCEIHPS 358
D+YT C+ S
Sbjct: 741 DSYTLCKFRKS 751
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 191 (72.3 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 42/114 (36%), Positives = 64/114 (56%)
Query: 654 ATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
ATP F I + L G G +++G TG + +G Y +L H+VDDK
Sbjct: 1186 ATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDK 1245
Query: 713 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1246 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1299
Score = 165 (63.1 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
L+ VKV + R Q GDK + RHG KG + EDMP+ +G DI++NP +PSR
Sbjct: 1048 LKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSR 1107
Query: 631 MTIGQLIECIMGKVAAHMG 649
M IGQ++E +G A +G
Sbjct: 1108 MNIGQVLEVHLGAAAKGIG 1126
Score = 134 (52.2 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 43/148 (29%), Positives = 74/148 (50%)
Query: 37 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
DD DH GN+R+ G + FR+ ++ R VR + + + ++ Q I AK I++
Sbjct: 444 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS--LGDLNELMPQDLINAKPISA 501
Query: 97 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPR 152
+K + +SQ +++ S ++H RR+++ P G RE + R
Sbjct: 502 AVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVR 549
Query: 153 QLHNSQWGMMCPAETPEGQACGLVKNLA 180
+H + +G +CP ETPEG GL+ +LA
Sbjct: 550 DVHPTHYGRLCPIETPEGPNIGLINSLA 577
Score = 103 (41.3 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 45/179 (25%), Positives = 85/179 (47%)
Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR--SYRDEEKKMGTLVKEDF 486
L G N +A ++GYN EDS+++++ F ++ + S + K+G+ E+
Sbjct: 795 LALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGS---EEI 851
Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-----ISQDEAQGQASR 541
D N +G + KLD+ G+ G V G D+++GK TP ++ +E +A
Sbjct: 852 -TADIPN-VG--ESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIF 907
Query: 542 YTR----RDHSISLRHSETGMVDQVLLTTNADGLRFVK--VRVRSVRIPQ----IGDKF 590
+ +D S+ + +S G + V + T DG+ K + + + I Q +G++F
Sbjct: 908 GEKASDVKDSSLRVPNSVKGTIIDVQVFTR-DGVEKDKRAIEIEEMHIAQARKDLGEEF 965
Score = 68 (29.0 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
A + ++ P I+ V AS+IPF +H+ + R + M +QA+
Sbjct: 648 ASDIQYMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAV 691
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 189 (71.6 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 654 ATPFTDVTVDNISKA-LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
ATP D ++ KA L G T+++G TG + +G Y +L H+VDDK
Sbjct: 1182 ATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDK 1241
Query: 713 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1242 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 162 (62.1 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
L+ VKV + R Q GDK + RHG KG + EDMP+ G DI++NP +PSR
Sbjct: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSR 1106
Query: 631 MTIGQLIECIMGKVAAHMG 649
M IGQ++E +G A +G
Sbjct: 1107 MNIGQILEVHLGLAAKGIG 1125
Score = 135 (52.6 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 22 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNG 80
++ +L+ G+ DD DH GN+R+ G + FR+ ++ R V+ + +DN
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDN- 486
Query: 81 KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 140
V Q I AK I++ +K + +SQ +++ S ++H RR+++
Sbjct: 487 --VMPQDLINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISA 532
Query: 141 --PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
P G RE + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 533 LGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 105 (42.0 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR--SYRDEEKKMGTLVKED 485
+L G N +A ++GYN EDS+++++ + F ++ + S + K+G E+
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGA---EE 849
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
D N +G + KLD+ G+ G V G D+++GK TP
Sbjct: 850 I-TADIPN-VG--EAALSKLDESGIVYIGAEVKGGDILVGKVTP 889
Score = 67 (28.6 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 337 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
++ LHP E + D + ++ + ++ + AS+IPF +H+ + R + M +QA+
Sbjct: 641 ESGLHPRE-HVD---YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 189 (71.6 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 654 ATPFTDVTVDNISKA-LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
ATP D ++ KA L G T+++G TG + +G Y +L H+VDDK
Sbjct: 1182 ATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDK 1241
Query: 713 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1242 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 162 (62.1 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
L+ VKV + R Q GDK + RHG KG + EDMP+ G DI++NP +PSR
Sbjct: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSR 1106
Query: 631 MTIGQLIECIMGKVAAHMG 649
M IGQ++E +G A +G
Sbjct: 1107 MNIGQILEVHLGLAAKGIG 1125
Score = 135 (52.6 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 22 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNG 80
++ +L+ G+ DD DH GN+R+ G + FR+ ++ R V+ + +DN
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDN- 486
Query: 81 KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 140
V Q I AK I++ +K + +SQ +++ S ++H RR+++
Sbjct: 487 --VMPQDLINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISA 532
Query: 141 --PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
P G RE + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 533 LGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 105 (42.0 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR--SYRDEEKKMGTLVKED 485
+L G N +A ++GYN EDS+++++ + F ++ + S + K+G E+
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGA---EE 849
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
D N +G + KLD+ G+ G V G D+++GK TP
Sbjct: 850 I-TADIPN-VG--EAALSKLDESGIVYIGAEVKGGDILVGKVTP 889
Score = 67 (28.6 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 337 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
++ LHP E + D + ++ + ++ + AS+IPF +H+ + R + M +QA+
Sbjct: 641 ESGLHPRE-HVD---YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 181 (68.8 bits), Expect = 1.3e-38, Sum P(5) = 1.3e-38
Identities = 42/114 (36%), Positives = 63/114 (55%)
Query: 654 ATPFTDVTVDNISKALHKCG-YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
ATP D + K L G + +G TGR + +G Y +L H+VDDK
Sbjct: 1183 ATPAFDGAAEKEIKELFVLADMPQSGQFVLTDGRTGREFERPVTVGYMYMLKLNHLVDDK 1242
Query: 713 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 165 (63.1 bits), Expect = 1.3e-38, Sum P(5) = 1.3e-38
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
L+ VKV + R Q GDK + RHG KG + EDMP+ G+ DI++NP +PSR
Sbjct: 1048 LKIVKVYLAVKRHIQPGDKMAGRHGNKGVISNVVPVEDMPYDQFGVPVDIVLNPLGVPSR 1107
Query: 631 MTIGQLIECIMGKVAAHMGKE 651
M IGQ++E +G +G++
Sbjct: 1108 MNIGQILETHLGMACRGIGEK 1128
Score = 130 (50.8 bits), Expect = 1.3e-38, Sum P(5) = 1.3e-38
Identities = 43/153 (28%), Positives = 75/153 (49%)
Query: 32 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 91
G+ DD DH GN+R+ G + FR+ ++ R VR + + + + Q I A
Sbjct: 439 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS--LGDLDAIMPQDLINA 496
Query: 92 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGK 147
K I++ +K + +SQ +++ S ++H RR+++ P G RE
Sbjct: 497 KPISAAVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISALGPGGLTRERA 544
Query: 148 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
+ R +H + +G +CP ETPEG GL+ +L+
Sbjct: 545 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 577
Score = 100 (40.3 bits), Expect = 1.3e-38, Sum P(5) = 1.3e-38
Identities = 44/170 (25%), Positives = 82/170 (48%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 485
+L G N +A ++GYN EDS+++++ F ++ + + K+G+ E+
Sbjct: 794 ELALGQNMRIAFMPWNGYNFEDSMLLSERVAIEDRFTTIHIQELTCIARDTKLGS---EE 850
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-----ISQDEAQGQAS 540
D N +G + KLD+ G+ G V+G D+++GK TP ++ +E +A
Sbjct: 851 I-TADIPN-VG--ESALSKLDEAGVVYIGAEVNGGDILVGKVTPKGETQLTPEEKLLRAI 906
Query: 541 RYTR----RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
+ +D S+ + +S G + V + T DG V+ R+V I Q+
Sbjct: 907 FGEKAADVKDSSLRVPNSVKGTIIDVQIFTR-DG---VEKDARAVEIEQM 952
Score = 75 (31.5 bits), Expect = 1.3e-38, Sum P(5) = 1.3e-38
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 334 DLVQARLHPE---EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
DLV R E +A A+ + ++ P I+ V AS+IPF +H+ + R S M +QA+
Sbjct: 633 DLVNCRHRNEFILKASAEVQ-YMDVSPQQIISVAASLIPFLEHDDANRALMGSNMQRQAV 691
Score = 37 (18.1 bits), Expect = 3.0e-20, Sum P(3) = 3.0e-20
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 78 DNGK-DVNLQFAIKAKTITSG 97
DN K D + +F +K + IT G
Sbjct: 1020 DNIKEDFDKKFEVKRRKITQG 1040
Score = 37 (18.1 bits), Expect = 3.0e-20, Sum P(3) = 3.0e-20
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 461 GFFRSLFFRSYRDEEKKMGTL 481
G F +LFF S R + +G +
Sbjct: 384 GLFSNLFFASERYDLSTVGRM 404
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 307 (113.1 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
Identities = 83/229 (36%), Positives = 116/229 (50%)
Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
TH E+ P IL V A++IPF DHNQSPRN YQ MGKQ MG V NY+ R D Y+L+
Sbjct: 547 THQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHT 606
Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
PQ PLV R ++ P G N++VA+ YSGY+ ED++I+N+SS +RGF +
Sbjct: 607 PQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGF-------A 659
Query: 471 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKT 527
Y K + R + G+R G +KLD DGL G+ + D
Sbjct: 660 YGSVIKMESIDLSLKANRGGDNLVFGIRPGDPNVKEKLDADGLPFVGSILQPGD------ 713
Query: 528 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RFVK 575
P + T ++ ++ E G+VD + L +N G +F K
Sbjct: 714 -PF-----YSYMNLNTGETFTVYYQNKEVGIVDNIKLCSNDRGTGKFKK 756
Score = 159 (61.0 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
Identities = 46/181 (25%), Positives = 81/181 (44%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 72
T+K Y + +L A G ED+ D N+ + AG L + + V+
Sbjct: 228 TEKFYLLCMMTRKLCAFAKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFV 287
Query: 73 VQKCVDNGK-DVNLQFAIKA----KTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNR 125
++K + ++N +KA +T +Y LATGN G +G+ V ++
Sbjct: 288 LEKRTEKADININADSLMKAFNMTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDK 347
Query: 126 LTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 184
L + LSH R ++ + + R+L WG +CP +TP+G+ CGL+ ++ +
Sbjct: 348 LNFVRYLSHFRCIHRGSAFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCE 407
Query: 185 I 185
I
Sbjct: 408 I 408
>UNIPROTKB|I3L6M3 [details] [associations]
symbol:LOC100737037 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU683880 EMBL:CU914657
Ensembl:ENSSSCT00000030129 OMA:LLNTTEC Uniprot:I3L6M3
Length = 232
Score = 388 (141.6 bits), Expect = 4.9e-35, P = 4.9e-35
Identities = 83/219 (37%), Positives = 134/219 (61%)
Query: 385 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
MGKQAMG N + R+DTL Y+L YPQKP+V T+ +E + F +LPAG NA VA+ YSG
Sbjct: 1 MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSG 60
Query: 445 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
Y+ ED++++N++S+DRGF R L +++ + K+ + P ++
Sbjct: 61 YDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEI 120
Query: 505 LDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----QASRYTRRDHSISLRHSETGMV 559
LD DG+ PG +V + V++ K+ P ++Q +G Q +Y +D I+ + + +
Sbjct: 121 LDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQY--KDVPITYKGATDSYI 178
Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 179 EKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 217
>UNIPROTKB|P0C501 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
Uniprot:P0C501
Length = 1075
Score = 301 (111.0 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 683
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 684 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 739 RFGEMERDCMIAHGASHFLKERLFDQSD 766
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 4.2e-21, Sum P(3) = 4.2e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 485
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 541
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 542 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 593
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 594 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 653
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 654 ATPFTDVTVDNISKAL 669
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 36 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 95
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 96 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 151
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 152 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 200
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
>UNIPROTKB|P0C502 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
Gramene:P0C502 Uniprot:P0C502
Length = 1075
Score = 301 (111.0 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 683
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 684 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 739 RFGEMERDCMIAHGASHFLKERLFDQSD 766
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 4.2e-21, Sum P(3) = 4.2e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 485
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 541
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 542 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 593
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 594 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 653
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 654 ATPFTDVTVDNISKAL 669
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 36 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 95
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 96 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 151
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 152 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 200
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
>UNIPROTKB|P0C503 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
ProteinModelPortal:P0C503 STRING:P0C503
EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
Length = 1075
Score = 301 (111.0 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 683
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 684 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 739 RFGEMERDCMIAHGASHFLKERLFDQSD 766
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 4.2e-21, Sum P(3) = 4.2e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 485
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 541
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 542 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 593
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 594 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 653
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 654 ATPFTDVTVDNISKAL 669
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 36 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 95
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 96 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 151
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 152 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 200
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
>UNIPROTKB|Q6ENI4 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
Length = 1075
Score = 301 (111.0 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 683
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 684 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 739 RFGEMERDCMIAHGASHFLKERLFDQSD 766
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 4.2e-21, Sum P(3) = 4.2e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 485
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 541
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 542 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 593
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 594 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 653
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 654 ATPFTDVTVDNISKAL 669
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 36 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 95
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 96 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 151
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 152 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 200
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
>UNIPROTKB|H7C0D9 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
Ensembl:ENST00000458012 Bgee:H7C0D9 Uniprot:H7C0D9
Length = 308
Score = 283 (104.7 bits), Expect = 9.8e-24, P = 9.8e-24
Identities = 75/226 (33%), Positives = 116/226 (51%)
Query: 412 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS- 470
Q PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S
Sbjct: 103 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 162
Query: 471 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKT 527
+ D +K +K+ D S G++ G KLDDDGL G ++ D
Sbjct: 163 FIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSY- 213
Query: 528 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIP 584
++ + + Y +++ + VD + + +N G + V + +R R P
Sbjct: 214 --LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVCITMRVPRNP 262
Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSR
Sbjct: 263 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSR 308
>UNIPROTKB|P21421 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=NAS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0020011 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 PANTHER:PTHR20856:SF3
EMBL:X75544 EMBL:X95275 EMBL:X52177 PIR:S72282
ProteinModelPortal:P21421 GenomeReviews:X95275_GR Uniprot:P21421
Length = 1024
Score = 251 (93.4 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 109/423 (25%), Positives = 175/423 (41%)
Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
G N +V Y GY ED++I+++ + + SL Y E + + +
Sbjct: 600 GNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIY---EISLNII--NNIPEICS 654
Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--P-ISQDEAQ--------GQAS 540
N M + + LD G+ GT + +++I K P I +++ G
Sbjct: 655 INLSKMYYKNIKHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINFLFGSKL 714
Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTN------ADGLRFVKVRVRS--VRIPQIGDKFSS 592
R + IS H + G V ++ + N ++K R+ + Q+GDK +
Sbjct: 715 RIFKNKPIISTIH-DIGRVIKIEILPNHLYNKTEKNNIYLKFRIYIGIQKYLQLGDKICN 773
Query: 593 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 652
RHG KG + D+P+ I PDI ++ +IPSR+ IGQ+ E I G + ++
Sbjct: 774 RHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIGQIFEGIYGLNSLYLNTRY 833
Query: 653 ------DATPFTDVT-VDNISKALHKCGYQMRG-----FETMY--NGHTGRRLTAMIFLG 698
+ + + + N K + + + + Y N TG + I L
Sbjct: 834 IISNNLNKNYYNNYNHIFNYYKYNYNNNFNINSKMSYNYNKYYLKNPFTGNMINNSICLN 893
Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 758
YY +L HM+ DK R G LT+QP +G ++ GG RFGEME + A GAS+ K
Sbjct: 894 NIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVWALEAFGASYLFK 953
Query: 759 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 818
E +SD + LK F N I I KL+ +EL +
Sbjct: 954 EFFTYKSDDIKSRKI----------LKNYLF------NNYKIKNTFISETFKLILKELQS 997
Query: 819 MAI 821
+AI
Sbjct: 998 LAI 1000
Score = 50 (22.7 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI-Y------VTNYQFRMDT-LAYVLYYP 411
+L ++IPF +N S RN M Q + I Y +TNY F ++ L +++
Sbjct: 470 LLSFIENLIPFIHYNDSIRNLMSIKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIISY 529
Query: 412 QKPLV 416
Q+ +V
Sbjct: 530 QEGIV 534
Score = 49 (22.3 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 152 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 187
R+L + G + T EG CGLV L +++ +
Sbjct: 360 RELPRNILGYISLINTNEGLTCGLVNYLTTNIFLNL 395
Score = 38 (18.4 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 53 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 83
+L GL++ + ++ + ++ K +N K++
Sbjct: 110 ILNGLYKTCIQLFKKNNKIFIIKFKNNNKNI 140
>UNIPROTKB|I3LR52 [details] [associations]
symbol:I3LR52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR015712 Pfam:PF00562 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00690000102214 EMBL:CU683880
Ensembl:ENSSSCT00000028377 Uniprot:I3LR52
Length = 80
Score = 151 (58.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
MP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F V ++ +
Sbjct: 1 MPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCED 60
Query: 669 LHKCGYQMRGFETMYNGHTG 688
L + GY G + + +G TG
Sbjct: 61 LVRHGYNYLGKDYVTSGITG 80
>UNIPROTKB|F8VRU2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR015712 Pfam:PF04561
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022585 ProteinModelPortal:F8VRU2
SMR:F8VRU2 Ensembl:ENST00000549569 ArrayExpress:F8VRU2 Bgee:F8VRU2
Uniprot:F8VRU2
Length = 170
Score = 136 (52.9 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 75 ILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 133
Query: 61 LFRKLTRDVRAYVQKCV 77
LF+K +++ + +
Sbjct: 134 LFKKFNSEMKKIADQVI 150
>UNIPROTKB|F8VRS3 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR015712 PANTHER:PTHR20856 GO:GO:0006351
GO:GO:0003899 EMBL:AC009721 GO:GO:0032549 EMBL:AC078992
EMBL:AC080012 HGNC:HGNC:30348 IPI:IPI01021275
ProteinModelPortal:F8VRS3 SMR:F8VRS3 Ensembl:ENST00000549195
ArrayExpress:F8VRS3 Bgee:F8VRS3 Uniprot:F8VRS3
Length = 54
Score = 115 (45.5 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 22 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 70
++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 1 MVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 48
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 842 817 0.0010 121 3 11 22 0.37 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 93
No. of states in DFA: 623 (66 KB)
Total size of DFA: 413 KB (2200 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 61.95u 0.20s 62.15t Elapsed: 00:00:05
Total cpu time: 62.00u 0.20s 62.20t Elapsed: 00:00:05
Start: Sat May 11 03:31:35 2013 End: Sat May 11 03:31:40 2013