BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003180
         (842 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score = 1707 bits (4422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 809/842 (96%), Positives = 830/842 (98%), Gaps = 2/842 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 354  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW+GIHRDP+MLV+TL
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTL 593

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R+LRRRVDVNTEVGVVRDI LKELRIYTDYGRCSRPLFIV+KQRLLIKK+DI ALQQRES
Sbjct: 594  RKLRRRVDVNTEVGVVRDIILKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRES 653

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            PEDGGWHDLV+KGFIEYIDTEEEETTMISMTINDLVQAR++PE+AYA TYTHCEIHPSLI
Sbjct: 654  PEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYAGTYTHCEIHPSLI 713

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ+EAQGQA 
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 893

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTRRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLTKE   ++ + KKK
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKE--VKTTNQKKK 1191

Query: 841  GA 842
            GA
Sbjct: 1192 GA 1193


>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score = 1707 bits (4420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 807/842 (95%), Positives = 830/842 (98%), Gaps = 3/842 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 354  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW+GIHRDP+MLV+TL
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTL 593

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            ++LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKK+DI ALQQRES
Sbjct: 594  KKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRES 653

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            PEDGGWHDLV+KGFIEYIDTEEEETTMISMTINDLVQAR++PE+AY+DTYTHCEIHPSLI
Sbjct: 654  PEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLI 713

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIV+IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ+EAQGQA 
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 893

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTRRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLTKE       ++KK
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKE---VKTTNQKK 1190

Query: 841  GA 842
            GA
Sbjct: 1191 GA 1192


>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
 gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 1706 bits (4418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 816/842 (96%), Positives = 834/842 (99%), Gaps = 1/842 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 354  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 414  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 473

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLVKTL
Sbjct: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTL 593

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES
Sbjct: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRES 653

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
             E+GGWHDLVAKGFIEYIDTEEEETTMISMTI+DLVQAR++PEEAY+DTYTHCEIHPSLI
Sbjct: 654  SEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLI 713

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+EAQGQ++
Sbjct: 834  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSA 893

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTRRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK D K +KD KKK
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-DVKPTKDQKKK 1192

Query: 841  GA 842
            GA
Sbjct: 1193 GA 1194


>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1213

 Score = 1701 bits (4404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 809/860 (94%), Positives = 832/860 (96%), Gaps = 19/860 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 355  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 415  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 474

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 475  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 534

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFE--------EISPAVIPQATKIFVNGCWVGIHRD 232
            LMVYITVGSAAYPILEFLEEWGTENFE        EISPAVIPQATKIFVNGCW+GIHRD
Sbjct: 535  LMVYITVGSAAYPILEFLEEWGTENFEVLVISFIKEISPAVIPQATKIFVNGCWMGIHRD 594

Query: 233  PEMLVKTLRRLRRR----------VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 282
            P+MLV+TLR+LRRR          VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+K
Sbjct: 595  PDMLVRTLRKLRRRFSAEGFDVVQVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDK 654

Query: 283  QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 342
            QRLLIKK+DI +LQQRESPEDGGWHDLV+KGFIEYIDTEEEETTMISMTINDLVQARL+P
Sbjct: 655  QRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNP 714

Query: 343  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
            EEAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD
Sbjct: 715  EEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 774

Query: 403  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
            TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGF
Sbjct: 775  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGF 834

Query: 463  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 522
            FRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDV
Sbjct: 835  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 894

Query: 523  IIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 582
            IIGKTTP+SQ+E QGQA+RY++RDHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVR
Sbjct: 895  IIGKTTPLSQEEQQGQAARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 954

Query: 583  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 642
            IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG
Sbjct: 955  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 1014

Query: 643  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 702
            KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYY
Sbjct: 1015 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYY 1074

Query: 703  QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLF 762
            QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLF
Sbjct: 1075 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLF 1134

Query: 763  DQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIA 822
            DQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIA
Sbjct: 1135 DQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIA 1194

Query: 823  PRMLTKEDTKQSKDHKKKGA 842
            PRMLTKE  K  KD KKKGA
Sbjct: 1195 PRMLTKE-VKAIKDQKKKGA 1213


>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera]
 gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
 gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
          Length = 1193

 Score = 1700 bits (4402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 803/842 (95%), Positives = 825/842 (97%), Gaps = 1/842 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 353  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 412

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 413  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 472

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 473  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 532

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+P++LVKTL
Sbjct: 533  LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTL 592

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKRDI ALQ RES
Sbjct: 593  RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRES 652

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            PEDGGWHDLV+KGFIEY+DTEEEETTMISMTINDL+ ARL+PEEAY++TYTHCEIHPSLI
Sbjct: 653  PEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLI 712

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 713  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 772

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 773  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 832

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD++QGQAS
Sbjct: 833  LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQAS 892

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 893  RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 952

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 953  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1012

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1013 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1072

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1073 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1132

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE  K  KD KKK
Sbjct: 1133 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE-VKPPKDQKKK 1191

Query: 841  GA 842
            GA
Sbjct: 1192 GA 1193


>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
 gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score = 1699 bits (4400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 813/842 (96%), Positives = 830/842 (98%), Gaps = 1/842 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G+FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 359  MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 418

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 419  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 478

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 479  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 538

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL
Sbjct: 539  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 598

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES
Sbjct: 599  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRES 658

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            PEDGGWHDLVAKGFIEYIDTEEEETTMISMTI+DL+QAR++P EAY+DTYTHCEIHPSLI
Sbjct: 659  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLI 718

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 719  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 778

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 779  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 838

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ+EAQGQA+
Sbjct: 839  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAA 898

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RY+RRDHSISLRHSE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 899  RYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 958

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 959  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1018

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1019 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1078

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1079 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIA 1138

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKK+SFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM TKE  K  KD KKK
Sbjct: 1139 IANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKE-IKPLKDQKKK 1197

Query: 841  GA 842
            G+
Sbjct: 1198 GS 1199


>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score = 1685 bits (4363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/842 (95%), Positives = 827/842 (98%), Gaps = 1/842 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 360  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 419

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGKDVNLQF IKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 420  LFRKLTRDVRSYVQKCVDNGKDVNLQFXIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 479

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLBSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 480  QVLNRLTYASTLSHLRRLBSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 539

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHR+P+MLV TL
Sbjct: 540  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGLWVGIHRNPDMLVSTL 599

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+D+ ALQQRES
Sbjct: 600  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDVQALQQRES 659

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            P+DGGWH+LVAKGFIEYIDTEEEETTMISMTINDL+ A+++P EAY+DTYTHCEIHPSLI
Sbjct: 660  PDDGGWHELVAKGFIEYIDTEEEETTMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLI 719

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 720  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 779

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 780  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 839

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR SGEDVIIGKTTPIS D+AQGQA+
Sbjct: 840  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDDAQGQAA 899

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 900  RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 959

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 960  GMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1019

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1020 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGP 1079

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1080 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIA 1139

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK D KQSK+ +KK
Sbjct: 1140 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTK-DIKQSKEQRKK 1198

Query: 841  GA 842
             A
Sbjct: 1199 AA 1200


>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
 gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide
 gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 1681 bits (4352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 810/842 (96%), Positives = 830/842 (98%), Gaps = 1/842 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 351  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDP+MLV+TL
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTL 590

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKK+DI  LQQRES
Sbjct: 591  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRES 650

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            P++GGWHDLVAKG+IEYIDTEEEETTMISMTINDLVQARL+P +AY+DTYTHCEIHPSLI
Sbjct: 651  PDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLI 710

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 770

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+AQGQAS
Sbjct: 831  LVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 890

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTR+DHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891  RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1130

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK D K +KD KKK
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-DVKLAKDQKKK 1189

Query: 841  GA 842
            GA
Sbjct: 1190 GA 1191


>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score = 1675 bits (4338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 805/842 (95%), Positives = 830/842 (98%), Gaps = 1/842 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 355  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 415  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 474

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 475  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 534

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEE GTENFEEISPAVIPQATKIFVBG W+GIHRDP+MLV+TL
Sbjct: 535  LMVYITVGSAAYPILEFLEEXGTENFEEISPAVIPQATKIFVBGTWMGIHRDPDMLVRTL 594

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ+LLIKK+DI  LQQRE+
Sbjct: 595  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQKLLIKKKDIQQLQQRET 654

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            PE+GGWHDLVAKG+IEYIDTEEEETTMISMTINDLVQA ++PE+AY+DTYTHCEIHPSLI
Sbjct: 655  PEEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQASINPEDAYSDTYTHCEIHPSLI 714

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 715  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 774

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 775  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 834

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+AQGQAS
Sbjct: 835  LVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 894

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTR+DHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 895  RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 954

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 955  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1014

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1015 TVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1074

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1075 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1134

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK D KQ++D KKK
Sbjct: 1135 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-DVKQARDQKKK 1193

Query: 841  GA 842
            GA
Sbjct: 1194 GA 1195


>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 1672 bits (4329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 800/827 (96%), Positives = 820/827 (99%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 351  MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411  LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 471  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLV+TL
Sbjct: 531  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTL 590

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK++DI ALQQRE+
Sbjct: 591  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRET 650

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+PEEAY++TYTHCEIHPSLI
Sbjct: 651  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLI 710

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT+AYVLYYPQKPLVTTRA
Sbjct: 711  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRA 770

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDV+IGKTTPI+QDEAQG A+
Sbjct: 831  LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAA 890

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTRRDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891  RYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951  GMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGRRLT+MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYR+HVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIA 1130

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1177


>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score = 1670 bits (4326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/840 (93%), Positives = 818/840 (97%), Gaps = 2/840 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G+FCETKKAYYFGYIIHRLL+CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 381  MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 440

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 441  LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 500

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 501  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 560

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAA PILEFLEEWGTENFEEISPAVIPQA KIFVNGCWVGIHR+P++LVKTL
Sbjct: 561  LMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTL 620

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRR++DVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVE QRLLIKKR I ALQQRE+
Sbjct: 621  RRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRET 680

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            PE+G WHDLVAKGFIEYIDTEEEETTMISMTINDL+ AR +PEEAY++TYTHCEIHPSLI
Sbjct: 681  PEEG-WHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLI 739

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 740  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 799

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 800  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 859

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QD+AQGQA+
Sbjct: 860  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQAT 919

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYT+RDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 920  RYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 979

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 980  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1039

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1040 TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1099

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+ FLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1100 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 1159

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT +D K  KD KK+
Sbjct: 1160 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT-QDNKTGKDQKKR 1218


>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score = 1669 bits (4321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/840 (93%), Positives = 818/840 (97%), Gaps = 2/840 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G+FCETKKAYYFGYIIHRLL+CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 385  MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 444

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 445  LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 504

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 505  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 564

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAA PILEFLEEWGTENFEEISPAVIPQA KIFVNGCWVGIHR+P++LVKTL
Sbjct: 565  LMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTL 624

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRR++DVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVE QRLLIKKR I ALQQRE+
Sbjct: 625  RRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRET 684

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            PE+G WHDLVAKGFIEYIDTEEEETTMISMTINDL+ AR +PEEAY++TYTHCEIHPSLI
Sbjct: 685  PEEG-WHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLI 743

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 744  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 803

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 804  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 863

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QD+AQGQA+
Sbjct: 864  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQAT 923

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYT+RDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 924  RYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 983

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 984  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1043

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1044 TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1103

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+ FLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1104 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 1163

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT +D K  KD KK+
Sbjct: 1164 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT-QDNKTGKDQKKR 1222


>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1087

 Score = 1667 bits (4318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 805/835 (96%), Positives = 824/835 (98%), Gaps = 1/835 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGG FRM
Sbjct: 254  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGXFRM 313

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVRAYVQK VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 314  LFRKLTRDVRAYVQKXVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 373

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 374  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 433

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDP+MLV+TL
Sbjct: 434  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTL 493

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI  LQQRES
Sbjct: 494  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRES 553

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            PE+GGWHDLVAKG+IEYIDTEEEETTMISMTINDL QARL+PEEAY+DTYTHCEIHPSLI
Sbjct: 554  PEEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLXQARLNPEEAYSDTYTHCEIHPSLI 613

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 614  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 673

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAI+CYSGY+QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 674  MEHLHFRQLPAGINAIVAISCYSGYSQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 733

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+AQGQAS
Sbjct: 734  LVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 793

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTR+DHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 794  RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 853

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 854  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 913

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 914  TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 973

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 974  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1033

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSK 835
            IANLKK+SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK D KQ+K
Sbjct: 1034 IANLKKSSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-DVKQAK 1087


>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score = 1664 bits (4308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 787/840 (93%), Positives = 816/840 (97%), Gaps = 2/840 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G+FCETKKAYYFGYIIHRLL+CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 391  MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 450

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 451  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 510

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 511  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 570

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAA PILEFLEEWGTENFEEISPAVIPQA KIFVNGCWVGIHR+P++LVKTL
Sbjct: 571  LMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTL 630

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRR++DVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIV+ QRLLIKK+ I ALQQRE+
Sbjct: 631  RRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVDGQRLLIKKKHIRALQQRET 690

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            P D GWHDLVAKGFIEYIDTEEEETTMISMTINDLV AR +P+EAY++TYTHCEIHPSLI
Sbjct: 691  P-DEGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARNNPQEAYSETYTHCEIHPSLI 749

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 750  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 809

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 810  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 869

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QD+AQGQA+
Sbjct: 870  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQAT 929

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RY++RDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 930  RYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 989

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 990  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1049

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1050 TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1109

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+ FLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1110 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 1169

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT  D K  KD KK+
Sbjct: 1170 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT-HDIKSGKDQKKR 1228


>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1188

 Score = 1663 bits (4307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 794/828 (95%), Positives = 813/828 (98%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 352  MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 411

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 412  LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 471

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 472  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTL
Sbjct: 532  LMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTL 591

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ QRLLIKKRDI ALQQRES
Sbjct: 592  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQRLLIKKRDIYALQQRES 651

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
             E+ GWH LVAKGFIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLI
Sbjct: 652  AEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLI 711

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 712  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 831

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+S
Sbjct: 832  LVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSS 891

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 892  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 951

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 952  GMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1011

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1012 TVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1071

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1072 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIA 1131

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1132 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179


>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
 gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide; AltName: Full=Protein EMBRYO DEFECTIVE 1989
 gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
          Length = 1188

 Score = 1659 bits (4297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 793/828 (95%), Positives = 812/828 (98%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G+ CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 352  MLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 411

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 412  LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 471

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 472  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTL
Sbjct: 532  LMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTL 591

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKKRDI ALQQRES
Sbjct: 592  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRES 651

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
             E+ GWH LVAKGFIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLI
Sbjct: 652  AEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLI 711

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 712  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 831

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+S
Sbjct: 832  LVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSS 891

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 892  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 951

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 952  GMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1011

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1012 TVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1071

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1072 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIA 1131

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1132 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179


>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score = 1654 bits (4283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 791/828 (95%), Positives = 811/828 (97%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            ML +VG G+ CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 352  MLLYVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 411

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 412  LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 471

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 472  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTL
Sbjct: 532  LMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTL 591

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKKRDI ALQQRES
Sbjct: 592  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRES 651

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
             E+ GWH LVAKGFIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLI
Sbjct: 652  AEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLI 711

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 712  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 831

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+S
Sbjct: 832  LVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSS 891

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 892  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 951

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 952  GMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1011

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1012 TVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1071

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1072 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIA 1131

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1132 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179


>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score = 1651 bits (4275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/828 (95%), Positives = 810/828 (97%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            ML +VG G+ CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 352  MLLYVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 411

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 412  LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 471

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 472  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAAYPILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTL
Sbjct: 532  LMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTL 591

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKKRDI ALQQRES
Sbjct: 592  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRES 651

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
             E+ GWH LVAKGFIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLI
Sbjct: 652  AEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLI 711

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 712  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINA VAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772  MEHLHFRQLPAGINANVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 831

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+S
Sbjct: 832  LVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSS 891

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 892  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 951

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 952  GMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1011

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1012 TVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1071

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1072 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIA 1131

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1132 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179


>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1207

 Score = 1618 bits (4191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 762/840 (90%), Positives = 804/840 (95%), Gaps = 2/840 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVGTG++CETKKAYYFGYIIHRLLLCALGRR EDDRDHY NKRLDLAGPLLGGLFRM
Sbjct: 369  MLPHVGTGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYANKRLDLAGPLLGGLFRM 428

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN+AG+RAGVS
Sbjct: 429  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANSAGSRAGVS 488

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 489  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 548

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHR+PE+LV+TL
Sbjct: 549  LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPLATKIFVNGCWVGIHRNPELLVRTL 608

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R+LRR+VDVNTEVGV+RDIRLKELR+YTD GRCSRPLFIVEKQ+L IKK+DI+ALQQRES
Sbjct: 609  RQLRRQVDVNTEVGVIRDIRLKELRLYTDCGRCSRPLFIVEKQKLQIKKKDILALQQRES 668

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            PE+ GWHDLVAKG+IEY+DTEEEETTMISMTINDL  ARL P++AY++TYTHCEIHPSLI
Sbjct: 669  PEEVGWHDLVAKGYIEYVDTEEEETTMISMTINDLTSARLCPDDAYSETYTHCEIHPSLI 728

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 729  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 788

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS+F+RSYRDEEKKMGT
Sbjct: 789  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKMGT 848

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFG P+R NTMGMRHGSYDKLDDDG APPGTRV+GEDVIIGKTTPI+ D+AQGQ +
Sbjct: 849  LVKEDFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVIIGKTTPIAPDDAQGQTA 908

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTRRDHS  LRHSE+GMVDQVLLTTNADGLRFVK+R+RS+RIPQIGDKFSSRHGQKGT+
Sbjct: 909  RYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHGQKGTI 968

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GM YTQEDMPWT+EGI PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 969  GMAYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1028

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFE MYNGHTGR LT  IFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1029 TVDNISKALHKCGYQMRGFERMYNGHTGRPLTYTIFLGPTYYQRLKHMVDDKIHSRGRGP 1088

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVC  CG++A
Sbjct: 1089 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCALCGIVA 1148

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECR CKNKTDIVQV+IPYACKLL QELMAMAIAPR+LTK+    S D KK+
Sbjct: 1149 IANLKKNSFECRHCKNKTDIVQVYIPYACKLLLQELMAMAIAPRLLTKD--IDSGDGKKR 1206


>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1203

 Score = 1615 bits (4181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 761/829 (91%), Positives = 806/829 (97%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVGT ++CETKKAYYFGYIIHRLLLC LGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 365  MLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 424

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVD+GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 425  LFRKLTRDVRSYVQKCVDSGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 484

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 485  QVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 544

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+P++LV+TL
Sbjct: 545  LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTL 604

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R+LRR+VDVNTEVGVVR+I LKELR+YTDYGRCSRPLFIV+K++L+IKK+DI+ALQ R+S
Sbjct: 605  RQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCSRPLFIVDKKKLIIKKKDILALQLRDS 664

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
             ED GWHDL AKGFIEY+DTEEEETTMI+MTINDL  +RL+P EAY++TYTHCEIHPSLI
Sbjct: 665  SEDSGWHDLXAKGFIEYVDTEEEETTMIAMTINDLTNSRLNPSEAYSETYTHCEIHPSLI 724

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 725  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 784

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 785  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 844

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR NTMGMRHGSYDKLDDDG APPGTRVSG+DVIIGKTTPISQD+AQGQ++
Sbjct: 845  LVKEDFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQGQSA 904

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTR+DHS SLRHSETG+VDQVLLTTNADGLRFVK+R+RSVRIPQIGDKFSSRHGQKGT+
Sbjct: 905  RYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTI 964

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQL+EC+MGKVAAHMGKEGDATPFTDV
Sbjct: 965  GMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLVECVMGKVAAHMGKEGDATPFTDV 1024

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1025 TVDNISKALHKCGYQMRGFERMYNGHTGRILTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1084

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYR+HVC+ CGLIA
Sbjct: 1085 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCQQCGLIA 1144

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            IANLKK SFECR CKNKTDIVQV+IPYACKLL QELM+MAIAPRMLTKE
Sbjct: 1145 IANLKKISFECRSCKNKTDIVQVYIPYACKLLIQELMSMAIAPRMLTKE 1193


>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1203

 Score = 1614 bits (4179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 763/834 (91%), Positives = 806/834 (96%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVGT ++CETKKAYYFGYIIHRLLLC LGRR EDDRDHYGBKRLDLAGPLLGGLFRM
Sbjct: 365  MLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYGBKRLDLAGPLLGGLFRM 424

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVD+GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 425  LFRKLTRDVRSYVQKCVDSGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 484

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 485  QVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 544

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+P++LV+TL
Sbjct: 545  LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTL 604

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R+LRR+VDVNTEVGVVR+I LKELR+YTDYGRCSRPLFIVEK++L+IKK+DIIALQ RES
Sbjct: 605  RQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCSRPLFIVEKKKLIIKKKDIIALQMRES 664

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
             ED GWHDLVAKGFIEY+DTEEEETTMI+MTINDL  +RL+PEEAY++TYTHCEIHPSLI
Sbjct: 665  SEDSGWHDLVAKGFIEYVDTEEEETTMIAMTINDLTNSRLNPEEAYSETYTHCEIHPSLI 724

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 725  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 784

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 785  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 844

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR NTMGMRHGSYDKLDDDG APPGTRVSG+DVIIGKTTPISQD+AQGQ +
Sbjct: 845  LVKEDFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQGQPA 904

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYT++DHS SLRHSETG+VDQVLLTTNADGLRFVK+R+RSVRIPQIGDKFSSRHGQKGT+
Sbjct: 905  RYTQKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTI 964

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPW +EGITPDIIVNPHAIPSRMTIGQL+ECIMGKVAAHMGKEGDATPFTDV
Sbjct: 965  GMTYTQEDMPWNIEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHMGKEGDATPFTDV 1024

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALH+CGYQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1025 TVDNISKALHRCGYQMRGFERMYNGHTGRVLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1084

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVC+ CGLIA
Sbjct: 1085 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQCGLIA 1144

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQS 834
            IANLKK SFECR C+NKTD VQV+IPYACKLL QELM+MAIAPRMLTKE    S
Sbjct: 1145 IANLKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKEPKPSS 1198


>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
 gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
          Length = 1205

 Score = 1612 bits (4174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/829 (90%), Positives = 797/829 (96%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVGT ++CETKKAYYFGYIIHRLLLC LGRR EDDRDHY NKRLDLAGPLLGGLFRM
Sbjct: 370  MLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAGPLLGGLFRM 429

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVD GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 430  LFRKLTRDVRSYVQKCVDGGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 489

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 490  QVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 549

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+P++LV+TL
Sbjct: 550  LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTL 609

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R+LRR+VDVNTEVGVVR+I LKELR+YTDYGRCSRPLFIV+K+RL IKK DIIALQ RES
Sbjct: 610  RQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCSRPLFIVDKKRLRIKKNDIIALQMRES 669

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
             ED GWHDLVAKGFIEY+DTEEEETTMI+MTINDL  +R++P+EAYA+TYTHCEIHPSLI
Sbjct: 670  SEDSGWHDLVAKGFIEYVDTEEEETTMIAMTINDLTNSRVNPDEAYAETYTHCEIHPSLI 729

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 730  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 789

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLFFRSYRDEEKKMGT
Sbjct: 790  MEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYRDEEKKMGT 849

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFGRPDR +TMGMRHG+YDKL+DDG APPGTRVSG+DVIIGKTTPISQDEAQGQ++
Sbjct: 850  LVKEDFGRPDREHTMGMRHGNYDKLEDDGFAPPGTRVSGDDVIIGKTTPISQDEAQGQSA 909

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYTR+DHS SLRHSETG+VDQVLLTTNADGLRFVK+R+RSVRIPQIGDKFSSRHGQKGT+
Sbjct: 910  RYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTI 969

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPW+ EGITPDIIVNPHAIPSRMTIGQL+ECIMGKVAAH+GKEGDATPFTDV
Sbjct: 970  GMTYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHIGKEGDATPFTDV 1029

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVD+IS+ LH CGYQMRGFE MYNGHTGR L AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1030 TVDSISRTLHNCGYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1089

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVC+ CGL+A
Sbjct: 1090 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQCGLMA 1149

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            IANLKK SFECR C+NKTD VQV+IPYACKLL QELM+MAIAPRMLTKE
Sbjct: 1150 IANLKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKE 1198


>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
 gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
          Length = 1218

 Score = 1608 bits (4165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 765/840 (91%), Positives = 797/840 (94%), Gaps = 17/840 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G+FCETKKAYYFGYIIHRLL+CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 396  MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 455

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
                           CVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 456  ---------------CVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 500

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 501  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 560

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAA PILEFLEEWGTENFEEISPAVIPQA KIFVNGCWVGIHR+P++LVKTL
Sbjct: 561  LMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTL 620

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            RRLRR++DVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVE QRLLIKK  IIALQ RE+
Sbjct: 621  RRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEGQRLLIKKAHIIALQHRET 680

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            P D GWH+LV+KG+IEYIDTEEEETTMISMTI+DL  AR +PE+AY++TYTHCEIHPSLI
Sbjct: 681  P-DEGWHELVSKGYIEYIDTEEEETTMISMTISDLHNARHNPEDAYSETYTHCEIHPSLI 739

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 740  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 799

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 800  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 859

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QD+AQGQAS
Sbjct: 860  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQAS 919

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RY++RDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 920  RYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 979

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA MG+EGDATPFTDV
Sbjct: 980  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAQMGREGDATPFTDV 1039

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALH+C YQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1040 TVDNISKALHRCNYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1099

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+ FLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1100 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 1159

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT  D K  KD KK+
Sbjct: 1160 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT-HDMKTGKDQKKR 1218


>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1185

 Score = 1598 bits (4138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 751/842 (89%), Positives = 795/842 (94%), Gaps = 3/842 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G+FCETKKAY+FGYIIHRLLLCA+G  AEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 346  MLPHVGVGEFCETKKAYFFGYIIHRLLLCAIGG-AEDDRDHYGNKRLDLAGPLLGGLFRM 404

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT+DVR Y+QKCVDNGK++NL +A+KAKTITSGLKYSLATGNWGQAN AG RAGVS
Sbjct: 405  LFRKLTKDVRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVS 464

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 465  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 524

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YITVGSAA PILEFLEEW TENFEEISPAVIP +TKIFVNG WVGIHR+PE+LV+TL
Sbjct: 525  LMAYITVGSAANPILEFLEEWSTENFEEISPAVIPNSTKIFVNGLWVGIHRNPELLVRTL 584

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+D+ ALQ +ES
Sbjct: 585  RQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKQDVRALQMKES 644

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
             E+  W+DLV+KGFIEY+DTEEEETTMISMTI DLV AR +PEEAY+DTYTHCEIHPS+I
Sbjct: 645  SENS-WYDLVSKGFIEYVDTEEEETTMISMTIADLVNARNNPEEAYSDTYTHCEIHPSMI 703

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 704  LGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 763

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS+F+RSYRDEEKK GT
Sbjct: 764  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKQGT 823

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            L+KE+F RP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+ QD+   QA 
Sbjct: 824  LIKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLPQDDNASQAQ 883

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK+RVRS+RIPQIGDKFSSRHGQKGTV
Sbjct: 884  RYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTV 943

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 944  GMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1003

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFE MYNGHTGRRLTA IFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1004 TVDNISKALHKCGYQMRGFEVMYNGHTGRRLTAHIFLGPTYYQRLKHMVDDKIHSRGRGP 1063

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCEHCG+IA
Sbjct: 1064 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGIIA 1123

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKKN++ECRGCKN TDIVQVHIPYACKLLFQELM+MAIAPRM TKE  K   +H KK
Sbjct: 1124 IANLKKNTYECRGCKNNTDIVQVHIPYACKLLFQELMSMAIAPRMFTKE-LKMRSEHAKK 1182

Query: 841  GA 842
             A
Sbjct: 1183 AA 1184


>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
 gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
          Length = 1178

 Score = 1591 bits (4119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 749/841 (89%), Positives = 794/841 (94%), Gaps = 3/841 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAY+FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR 
Sbjct: 339  MLPHVGVGEYCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQ 398

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT+DVRAY+QKCVDNGK+VNL +A+KAKTITSGLKYSLATGNWGQAN+   RAGVS
Sbjct: 399  LFRKLTKDVRAYLQKCVDNGKEVNLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVS 458

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKL-AKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            QVLNRLTYASTLSHLRRLNSPIGREG+L AKPRQLHNS WGMMCPAETPEGQACGLVKNL
Sbjct: 459  QVLNRLTYASTLSHLRRLNSPIGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNL 518

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVGSAA PIL FLEEW TENFEEISPAVIP ATKIFVNG WVGIHR+PE LVKT
Sbjct: 519  ALMAYITVGSAANPILVFLEEWSTENFEEISPAVIPNATKIFVNGAWVGIHREPEHLVKT 578

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            LR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK DI ALQQ+E
Sbjct: 579  LRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKE 638

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
            + E+G WH+LV+KGFIEY+DTEEEETTMISMTI+DLV ARL+PEEAY+DTYTHCEIHPS+
Sbjct: 639  AGENG-WHELVSKGFIEYVDTEEEETTMISMTISDLVNARLNPEEAYSDTYTHCEIHPSM 697

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTR
Sbjct: 698  ILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTR 757

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS+F+RSYRDEEKK G
Sbjct: 758  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAG 817

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
            TLVKE+F RP+R  T GMRHGSYDKLDDDG+APPGTRVSGEDVIIGKTTP++QDE   QA
Sbjct: 818  TLVKEEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPLAQDETGTQA 877

Query: 540  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
             RY++RD S  LRHSE+GM+DQVLLTTNADGLRFVK RVRS+RIPQIGDKFSSRHGQKGT
Sbjct: 878  QRYSKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGT 937

Query: 600  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
            +GMTYTQEDMP+T EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA MGKEGDATPFTD
Sbjct: 938  IGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTD 997

Query: 660  VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 719
            VTVDNISKALHKC YQ+RGFETMYNGHTGRRL+AMIF+GPTYYQRLKHMVDDKIHSRGRG
Sbjct: 998  VTVDNISKALHKCNYQLRGFETMYNGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRG 1057

Query: 720  PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
            PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCEHCGLI
Sbjct: 1058 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLI 1117

Query: 780  AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKK 839
            AIANLKKN+FECR CKNKT+IVQVHIPYACKLLFQELMAMAIAPRM  KE  K+ K H K
Sbjct: 1118 AIANLKKNTFECRSCKNKTEIVQVHIPYACKLLFQELMAMAIAPRMFMKE-VKKLKGHVK 1176

Query: 840  K 840
            K
Sbjct: 1177 K 1177


>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1198

 Score = 1590 bits (4116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 746/842 (88%), Positives = 798/842 (94%), Gaps = 3/842 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVGT ++CETKKAYYFGYII+RLLLCALGRR EDDRDHY NKRLDLAGPLL GLFRM
Sbjct: 360  MLPHVGTEEYCETKKAYYFGYIINRLLLCALGRRPEDDRDHYANKRLDLAGPLLAGLFRM 419

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTITSGLKYS+ATGNWGQANAAGTRAGVS
Sbjct: 420  LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSIATGNWGQANAAGTRAGVS 479

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 480  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 539

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LMVYITVGSAA PILEFL+EW TENFEEISPAVIPQATKIFVNG W+GIHR+PE+LV+TL
Sbjct: 540  LMVYITVGSAANPILEFLDEWSTENFEEISPAVIPQATKIFVNGNWIGIHRNPELLVRTL 599

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R+LRR+VDVNTEVG++RDI LKELR+YTDYGRCSRPLFIV+KQRL+IKK+DI+ALQQRES
Sbjct: 600  RQLRRQVDVNTEVGIIRDIHLKELRLYTDYGRCSRPLFIVDKQRLVIKKKDILALQQRES 659

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
             ++ GWHDLV  G +EY+DTEEEETTMISMTINDL+ +R +P+ AY++TYTHCEIHPSL+
Sbjct: 660  ADEYGWHDLVRNGSVEYVDTEEEETTMISMTINDLINSRHNPDAAYSETYTHCEIHPSLV 719

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 720  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 779

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 780  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 839

Query: 481  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
            LVKEDFG P+R NTMGMRHGSYDKL+DDG APPGTRVSG+DVIIGKTTP + DE   Q  
Sbjct: 840  LVKEDFGCPNRDNTMGMRHGSYDKLEDDGFAPPGTRVSGDDVIIGKTTPFTPDE--NQNI 897

Query: 541  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            R+TR+DHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGT+
Sbjct: 898  RFTRQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRSVRIPQIGDKFSSRHGQKGTI 957

Query: 601  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
            GMTYTQ+DMPW++EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 958  GMTYTQDDMPWSIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1017

Query: 661  TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            TVDNISKALHKCGYQMRGFETMYNGHTGR LT+MIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1018 TVDNISKALHKCGYQMRGFETMYNGHTGRPLTSMIFLGPTYYQRLKHMVDDKIHSRGRGP 1077

Query: 721  VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGL+ 
Sbjct: 1078 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLMG 1137

Query: 781  IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
            IANLKK+S+ECR CKNKTDIVQ++IPYACKLL QELM+MAIAPR+LT  D K  K   K 
Sbjct: 1138 IANLKKHSYECRSCKNKTDIVQIYIPYACKLLIQELMSMAIAPRLLTN-DVKSVKGQSKT 1196

Query: 841  GA 842
            G 
Sbjct: 1197 GG 1198


>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
 gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
          Length = 1178

 Score = 1589 bits (4115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 749/841 (89%), Positives = 793/841 (94%), Gaps = 3/841 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG G++CETKKAY+FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR 
Sbjct: 339  MLPHVGVGEYCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQ 398

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT+DVRAY+QKCVDNGK+VNL +A+KAKTITSGLKYSLATGNWGQAN+   RAGVS
Sbjct: 399  LFRKLTKDVRAYLQKCVDNGKEVNLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVS 458

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKL-AKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            QVLNRLTYASTLSHLRRLNSPIGREG+L AKPRQLHNS WGMMCPAETPEGQACGLVKNL
Sbjct: 459  QVLNRLTYASTLSHLRRLNSPIGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNL 518

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVGSAA PIL FLEEW TENFEEISPAVIP ATKIFVNG WVGIHR+PE LVKT
Sbjct: 519  ALMAYITVGSAANPILVFLEEWSTENFEEISPAVIPNATKIFVNGAWVGIHREPEHLVKT 578

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            LR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK DI ALQQ+E
Sbjct: 579  LRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKE 638

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
            + E+G WH+LV+KGFIEY+DTEEEETTMISMTI+DLV ARL+PEEAY+DTYTHCEIHPS+
Sbjct: 639  AGENG-WHELVSKGFIEYVDTEEEETTMISMTISDLVNARLNPEEAYSDTYTHCEIHPSM 697

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTR
Sbjct: 698  ILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTR 757

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS+F+RSYRDEEKK G
Sbjct: 758  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAG 817

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
            TLVKE+F RP+R  T GMRHGSYDKLDDDG+APPGTRVSGEDVIIGKTTP+ QDE   QA
Sbjct: 818  TLVKEEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPLVQDETGTQA 877

Query: 540  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
             RY++RD S  LRHSE+GM+DQVLLTTNADGLRFVK RVRS+RIPQIGDKFSSRHGQKGT
Sbjct: 878  QRYSKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGT 937

Query: 600  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
            +GMTYTQEDMP+T EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA MGKEGDATPFTD
Sbjct: 938  IGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTD 997

Query: 660  VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 719
            VTVDNISKALHKC YQ+RGFETMYNGHTGRRL+AMIF+GPTYYQRLKHMVDDKIHSRGRG
Sbjct: 998  VTVDNISKALHKCNYQLRGFETMYNGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRG 1057

Query: 720  PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
            PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCEHCGLI
Sbjct: 1058 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLI 1117

Query: 780  AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKK 839
            AIANLKKN+FECR CKNKT+IVQVHIPYACKLLFQELMAMAIAPRM  KE  K+ K H K
Sbjct: 1118 AIANLKKNTFECRSCKNKTEIVQVHIPYACKLLFQELMAMAIAPRMFMKE-VKKLKGHVK 1176

Query: 840  K 840
            K
Sbjct: 1177 K 1177


>gi|68131916|gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score = 1430 bits (3701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/705 (95%), Positives = 694/705 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+P++LVKTL
Sbjct: 427 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKRDI ALQ RES
Sbjct: 487 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           PEDGGWHDLV+KGFIEY+DTEEEETTMISMTINDL+ ARL+PEEAY++TYTHCEIHPSLI
Sbjct: 547 PEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD++QGQAS
Sbjct: 727 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQAS 786

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 787 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 846

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 847 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 906

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 907 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951


>gi|68131914|gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
          Length = 951

 Score = 1425 bits (3688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/705 (94%), Positives = 694/705 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LVKTL
Sbjct: 427 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES
Sbjct: 487 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           PE+GGWHDLVAKG+IEY+DTEEEETTMISMTINDL+ A+L+PEEAY+DTYTHCEIHPSLI
Sbjct: 547 PEEGGWHDLVAKGYIEYVDTEEEETTMISMTINDLITAKLNPEEAYSDTYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQ+PRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQTPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE+QGQAS
Sbjct: 727 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 786

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RS+RIPQIGDKFSSRHGQKGTV
Sbjct: 787 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSIRIPQIGDKFSSRHGQKGTV 846

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 847 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 906

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           TVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRL
Sbjct: 907 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRL 951


>gi|70794986|gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
          Length = 733

 Score = 1425 bits (3688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/724 (95%), Positives = 705/724 (97%), Gaps = 3/724 (0%)

Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
           VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN
Sbjct: 11  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 70

Query: 179 LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
           LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLVK
Sbjct: 71  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVK 130

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
           TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE QRLLIKKRDI ALQQR
Sbjct: 131 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVENQRLLIKKRDIQALQQR 190

Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
           ESPEDGGWHDLV+KG+IEYIDTEEEETTMISMTINDLV AR + +EAY+DTYTHCEIHPS
Sbjct: 191 ESPEDGGWHDLVSKGYIEYIDTEEEETTMISMTINDLVSARANKKEAYSDTYTHCEIHPS 250

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT
Sbjct: 251 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 310

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           RAMEHLHFR+LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM
Sbjct: 311 RAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 370

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-- 536
           GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DEA   
Sbjct: 371 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEATQG 430

Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           G A+RYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ
Sbjct: 431 GPAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 490

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGTVGMTYTQEDMPWT+EGI PDIIVNPHAIPSRMTIGQLIECIMGKVAA MGKEGDATP
Sbjct: 491 KGTVGMTYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAXMGKEGDATP 550

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
           FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL A IFLGPTYYQRLKHMVDDKIHSR
Sbjct: 551 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAXIFLGPTYYQRLKHMVDDKIHSR 610

Query: 717 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
           GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE C
Sbjct: 611 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERC 670

Query: 777 GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 836
           GL+AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRM+TK D KQ+KD
Sbjct: 671 GLVAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMMTK-DIKQAKD 729

Query: 837 HKKK 840
            KKK
Sbjct: 730 QKKK 733


>gi|68131842|gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
          Length = 951

 Score = 1423 bits (3684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 670/705 (95%), Positives = 692/705 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIH+LLLCA GRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIIHQLLLCAFGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+P++LVKTL
Sbjct: 427 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQ RES
Sbjct: 487 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQLRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           PEDGGWHDLV+KGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY++TYTHCEIHPSLI
Sbjct: 547 PEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD++QGQ S
Sbjct: 727 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQPS 786

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 787 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 846

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 847 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 906

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 907 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951


>gi|70794976|gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score = 1422 bits (3682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/705 (94%), Positives = 692/705 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 219 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 278

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 279 LFRKLTRDVRAYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 338

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 339 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 398

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LV TL
Sbjct: 399 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVNTL 458

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDI LKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRE+
Sbjct: 459 RKLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRET 518

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           PEDGGWHDLVAKG+IEY+DTEEEETTMISMTINDLV ARL+PEEAY++TYTHCEIHPSLI
Sbjct: 519 PEDGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLI 578

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 579 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 638

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 639 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 698

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E QGQAS
Sbjct: 699 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEPQGQAS 758

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 759 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 818

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 819 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 878

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           TVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 879 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 923


>gi|70794970|gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa
           s.n.]
          Length = 951

 Score = 1422 bits (3680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 679/705 (96%), Positives = 696/705 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG  ++CETKKAYYFGYIIHRLLL ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGMAEYCETKKAYYFGYIIHRLLLVALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP+ATKIFVNGCWVGIHRDP+MLVKTL
Sbjct: 427 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPEATKIFVNGCWVGIHRDPDMLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRE+
Sbjct: 487 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRET 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           PEDGGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY++ YTHCEIHPSLI
Sbjct: 547 PEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSEYYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R++TM MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+QDE+QGQAS
Sbjct: 727 LVKEDFGRPNRNDTMNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQGQAS 786

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 787 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 846

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 847 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 906

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 907 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951


>gi|70794972|gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
          Length = 951

 Score = 1420 bits (3676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 665/705 (94%), Positives = 693/705 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVR YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRGYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA+PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+PE+LVKTL
Sbjct: 427 LMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPELLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDI LKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQ RES
Sbjct: 487 RQLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQALQLRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           PE+GGWHDLVAKGFIEY+DTEEEETTMISMTINDLV AR++P+EAY++TYTHCEIHPSLI
Sbjct: 547 PEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARVNPKEAYSETYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           L+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++QGQAS
Sbjct: 727 LIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQGQAS 786

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 787 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 846

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 847 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 906

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           TVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRL
Sbjct: 907 TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRL 951


>gi|68131834|gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
          Length = 952

 Score = 1420 bits (3676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 683/706 (96%), Positives = 697/706 (98%), Gaps = 1/706 (0%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG  ++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVEEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTL HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLPHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAAYPILEFLEEWGTENFEEISP VIPQATKIFVNGCWVGIHRDP+MLVKTL
Sbjct: 427 LMVYITVGSAAYPILEFLEEWGTENFEEISPVVIPQATKIFVNGCWVGIHRDPDMLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQ RE 
Sbjct: 487 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQLREG 546

Query: 301 -PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
            P+D GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL+PEEAY++TYTHCEIHPSL
Sbjct: 547 GPDDVGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSL 606

Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
           ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR
Sbjct: 607 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 666

Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
           AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG
Sbjct: 667 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 726

Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
           TLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+AQGQA
Sbjct: 727 TLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQGQA 786

Query: 540 SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           SRY+RRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT
Sbjct: 787 SRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 846

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD
Sbjct: 847 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 906

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           VTVDNISKALH+CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 907 VTVDNISKALHRCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 952


>gi|68131844|gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa]
          Length = 952

 Score = 1417 bits (3669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/706 (96%), Positives = 695/706 (98%), Gaps = 1/706 (0%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G+FCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+P+MLVKTL
Sbjct: 427 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHREPDMLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           RRLRRRVDVNTEVGVVRDIRL+ELRIYTDYGRCSRPLFIVEKQRLLI+K+DI ALQQRES
Sbjct: 487 RRLRRRVDVNTEVGVVRDIRLRELRIYTDYGRCSRPLFIVEKQRLLIRKKDIHALQQRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           PEDGGWHDLV+KGFIEYIDTEEEETTMISMTI DLVQAR  PEEAY+D YTHCEIHPSLI
Sbjct: 547 PEDGGWHDLVSKGFIEYIDTEEEETTMISMTIRDLVQARNSPEEAYSDNYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGI AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGIYAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ-A 539
           LVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDEAQGQ A
Sbjct: 727 LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAA 786

Query: 540 SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           +RYTR DHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT
Sbjct: 787 ARYTRSDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 846

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD
Sbjct: 847 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 906

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           VTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 907 VTVDNISKALHKCGYQMRGFETMYNGHTGRQLSAMIFLGPTYYQRL 952


>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score = 1410 bits (3651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 665/705 (94%), Positives = 690/705 (97%), Gaps = 1/705 (0%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 239 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 298

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 299 LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 358

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 359 QVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 418

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTL
Sbjct: 419 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 478

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+ I +LQQRE+
Sbjct: 479 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKHIRSLQQRET 538

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            +D GWHDLVAKGFIEY+DTEEEETTMISMTI+DLV ARL+P+EAY++TYTHCEIHPSLI
Sbjct: 539 -QDEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPDEAYSETYTHCEIHPSLI 597

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 598 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 657

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 658 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 717

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           L+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE+QGQAS
Sbjct: 718 LIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 777

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 778 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 837

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA HMGKEGDATPFTDV
Sbjct: 838 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAVHMGKEGDATPFTDV 897

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 898 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 942


>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score = 1365 bits (3533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/827 (77%), Positives = 724/827 (87%), Gaps = 4/827 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV  G+F ETKKAY+FGY++HRLLL ALGRR +DDRDHY NKRLDL GPLL  LFR 
Sbjct: 344  MLPHVAIGEFSETKKAYFFGYMVHRLLLVALGRRDQDDRDHYCNKRLDLGGPLLANLFRQ 403

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT+DVR++VQK VD GK++NL  A+   TIT GL+YS+ATGNWG    AG RAGVS
Sbjct: 404  LFRKLTKDVRSHVQKAVDRGKEINLMAAVNKDTITRGLRYSIATGNWGMQGTAGMRAGVS 463

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRR++SPIGREGKLAKPRQLHNSQWG++CPAETPEGQACGLVKNLA
Sbjct: 464  QVLNRLTYASTLSHLRRISSPIGREGKLAKPRQLHNSQWGVICPAETPEGQACGLVKNLA 523

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VG  + PI EFLEEW TEN EEI+P+VI +ATK+FVNG WVGIHR P +LV TL
Sbjct: 524  LMSYVSVGCPSAPIGEFLEEWSTENLEEINPSVILEATKVFVNGVWVGIHRQPAVLVNTL 583

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--KQRLLIKKRDIIALQQR 298
            R++RR+VD++TEVG+V DIRL+ELR+YTDYGRC RPLFIV+  ++RL I K DI  LQ+R
Sbjct: 584  RKMRRQVDISTEVGIVHDIRLQELRLYTDYGRCCRPLFIVDPDRKRLTITKDDIRQLQER 643

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E     GW++LV KG IEYIDTEEEETTMI+M I DL  AR     AY++TYTHCEIHPS
Sbjct: 644  EVTH-FGWNELVHKGCIEYIDTEEEETTMIAMEIKDLENARTPGRVAYSETYTHCEIHPS 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+YVTNYQ RMDT AYVLYYPQKPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQTRMDTQAYVLYYPQKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            RAMEHLHFR+LPAG N IVAIACYSGYNQEDS++MNQSSIDRGFFRS+FFR+YR EEKK 
Sbjct: 763  RAMEHLHFRELPAGQNTIVAIACYSGYNQEDSLMMNQSSIDRGFFRSMFFRTYRAEEKKQ 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 538
            G+LV+E    PDRS T+ MRHG+YDKLDDDG+APPGTRVSGEDVIIGKT+P++ DE  G 
Sbjct: 823  GSLVQEVIEVPDRSVTVAMRHGTYDKLDDDGIAPPGTRVSGEDVIIGKTSPLA-DEQPGV 881

Query: 539  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
            A R++++D S SLR+SE+GM+DQV++TTNA+G RFVK+RVRS+RIPQ+GDKF+SRHGQKG
Sbjct: 882  AQRFSKKDVSTSLRNSESGMIDQVMVTTNAEGQRFVKIRVRSIRIPQVGDKFASRHGQKG 941

Query: 599  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
            T+GMTYTQEDMPWT EGI PD+I+NPHAIPSRMTIG L+E +M KVAA +GKEGDATPF 
Sbjct: 942  TIGMTYTQEDMPWTSEGIVPDLIINPHAIPSRMTIGHLVEALMSKVAALVGKEGDATPFA 1001

Query: 659  DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
            +VTVDNIS ALH CGYQ RG+ETMYNGHTGRRL A IFL PTYYQRLKHMVDDKIHSRGR
Sbjct: 1002 EVTVDNISAALHTCGYQSRGWETMYNGHTGRRLQAQIFLNPTYYQRLKHMVDDKIHSRGR 1061

Query: 719  GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
            GPVQILTRQP EGR+RDGGLRFGEMERDC+I+HG++ FLKERLFDQSDAYRVHVC+ CGL
Sbjct: 1062 GPVQILTRQPVEGRARDGGLRFGEMERDCIISHGSAAFLKERLFDQSDAYRVHVCDRCGL 1121

Query: 779  IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
             A+ANLKKN F C  CKN T IVQVH+PYACKLLFQELMAMAIAPRM
Sbjct: 1122 FAVANLKKNQFHCPACKNTTGIVQVHMPYACKLLFQELMAMAIAPRM 1168


>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
          Length = 1175

 Score = 1360 bits (3520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/831 (76%), Positives = 719/831 (86%), Gaps = 7/831 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  +FCETKKAY+FGY+IHRLLL ALGRR EDDRDHYGNKRLDL GPLL  LFR 
Sbjct: 347  LLPHVGMEEFCETKKAYFFGYVIHRLLLVALGRREEDDRDHYGNKRLDLGGPLLANLFRQ 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKL++DVR YVQKCVD GK++NL  AI   TIT GL+YSLATGNWG   A   R GVS
Sbjct: 407  LFRKLSKDVRGYVQKCVDKGKEINLTSAINKDTITRGLRYSLATGNWGVVGAGEVRPGVS 466

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRR+NSPIGREGK+AKPRQLHNSQWGM+CPAETPEGQACGLVKNLA
Sbjct: 467  QVLNRLTYASTLSHLRRINSPIGREGKIAKPRQLHNSQWGMICPAETPEGQACGLVKNLA 526

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VG A+ P+L+FL+EW TE+ EEISP+VIP+ATKIFVNG WVGIHRDP+ LV+TL
Sbjct: 527  LMTYISVGCASNPVLDFLQEWATEDLEEISPSVIPKATKIFVNGVWVGIHRDPQTLVETL 586

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R +RR+VD++TEVGVV DIRL+ELR+YTDYGRC RPLFIVE Q + +KKRDII LQ RE 
Sbjct: 587  RAMRRQVDISTEVGVVHDIRLQELRLYTDYGRCCRPLFIVEDQAVKVKKRDIINLQNRE- 645

Query: 301  PEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT---YTHCEIH 356
             E G  W  ++  G+IEY+D EEEETTMI+M INDL  AR+  + A A +   YTHCEIH
Sbjct: 646  -ETGFTWQSMIEAGYIEYVDVEEEETTMIAMFINDLRLARIAEDAATASSIALYTHCEIH 704

Query: 357  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
            P++ILGVCASI+PFPDHNQSPRNTYQSAMGKQAMG+YVTNYQ RMDT  YVL+YPQKPLV
Sbjct: 705  PAMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQVRMDTQGYVLFYPQKPLV 764

Query: 417  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
            TTR ME+LHFR+LPAGIN IVAIACYSGYNQEDS +MNQSSIDRG FRS+FFRSY+ EEK
Sbjct: 765  TTRNMEYLHFRELPAGINTIVAIACYSGYNQEDSTMMNQSSIDRGIFRSIFFRSYKTEEK 824

Query: 477  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ 536
            K G+LV+E   RP+R  T G RHG+YDKLDDDG+APPGTRVSG+D++IGKT+PI  D+  
Sbjct: 825  KQGSLVQESIERPNREITAGTRHGTYDKLDDDGIAPPGTRVSGDDIVIGKTSPIP-DDGS 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RY+++D S +LRHSE+GM+D VL+TT ADG RFVK+RVRSVRIPQ+GDKF+SRHGQ
Sbjct: 884  GLPQRYSKKDASTALRHSESGMIDSVLVTTGADGQRFVKMRVRSVRIPQVGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT+G+TYTQEDMP++ EGI+PD+I+NPHAIPSRMTIG L+E +M KVAA MGKEGDATP
Sbjct: 944  KGTIGITYTQEDMPFSAEGISPDLIINPHAIPSRMTIGHLVEALMSKVAACMGKEGDATP 1003

Query: 657  FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
            FT VTVDNIS ALH+CGYQ RG+E MYNGHTGR+L A IFL PTYYQRLKHMVDDKIHSR
Sbjct: 1004 FTSVTVDNISAALHRCGYQSRGWEVMYNGHTGRQLQAQIFLNPTYYQRLKHMVDDKIHSR 1063

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
            GRGPVQILTRQP EGR+RDGGLRFGEMERDC+I+HGA+ FLKERL+DQSDAYRVHVC  C
Sbjct: 1064 GRGPVQILTRQPVEGRARDGGLRFGEMERDCIISHGAAAFLKERLYDQSDAYRVHVCSVC 1123

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            GLIA+ANLKKN F C  CKN T IVQV IPYACKLLFQELMAM IAPRM+ 
Sbjct: 1124 GLIAVANLKKNQFYCTACKNTTGIVQVFIPYACKLLFQELMAMCIAPRMIV 1174


>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
            str. Neff]
          Length = 1196

 Score = 1357 bits (3513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/829 (75%), Positives = 723/829 (87%), Gaps = 6/829 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG   +CETKKAY+FGYIIHRLLL A G+R  DDRDHYGNKRLDLAGPLLG LFR 
Sbjct: 369  MLPHVGISQYCETKKAYFFGYIIHRLLLAAQGKRPLDDRDHYGNKRLDLAGPLLGTLFRQ 428

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LF+KL +DVR Y+QKCVD+GK+ NL  A+K+KTIT+GLKYSLATGNW    + G ++GVS
Sbjct: 429  LFKKLNKDVRGYLQKCVDSGKEFNLMMAVKSKTITNGLKYSLATGNWTSTRSVGAKSGVS 488

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLA
Sbjct: 489  QVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGMICPAETPEGQACGLVKNLA 548

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGSA+ PILEFLEEW TEN EEISP+ IP ATKIFVNG WVGIHR P+ LV+TL
Sbjct: 549  LMAYISVGSASAPILEFLEEWSTENLEEISPSNIPAATKIFVNGAWVGIHRQPDHLVQTL 608

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK---RDIIALQQ 297
            R LRR VDV+ EV VVRDIR +ELR+YTD GRC RPLFIV+KQRLL+KK   RDI  LQQ
Sbjct: 609  RSLRRCVDVSAEVSVVRDIREQELRLYTDAGRCCRPLFIVDKQRLLLKKSDIRDIQKLQQ 668

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
             ES  + GW  LV++GF+EYID EEEET MI+MTI+DL ++R   EEAY+ TYTHCEIHP
Sbjct: 669  DESLSEKGWSHLVSQGFVEYIDCEEEETVMIAMTIDDLKKSR--SEEAYSYTYTHCEIHP 726

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TNYQ RMDTLA+VLYYPQKPL+T
Sbjct: 727  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNYQLRMDTLAHVLYYPQKPLIT 786

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            T +MEHLHFR+LP+G N I+AIACYSGYNQEDS++MNQSS+DRGFFRS+F+RSY D EK 
Sbjct: 787  THSMEHLHFRKLPSGQNGIIAIACYSGYNQEDSLVMNQSSVDRGFFRSVFYRSYVDSEKH 846

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
            MG    E+F +P R +TMGMRHGSY+K++DDGL  PGTRVSG+D+IIGKTTP+S +E   
Sbjct: 847  MGQY-DEEFEKPIREDTMGMRHGSYEKIEDDGLIAPGTRVSGDDIIIGKTTPVSPNEEDT 905

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
            +A R++++D SIS+R SETG++D+V+L+TN+DG +F KVRVRSVR PQIGDKFSSRHGQK
Sbjct: 906  RAQRFSKKDSSISVRSSETGIIDKVMLSTNSDGYKFCKVRVRSVRTPQIGDKFSSRHGQK 965

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GTVG+ Y QEDMP+ +EGITPDIIVNPHAIPSRMTIGQLIEC+MGKV+A  G+EGDATPF
Sbjct: 966  GTVGIMYRQEDMPFNIEGITPDIIVNPHAIPSRMTIGQLIECLMGKVSATTGEEGDATPF 1025

Query: 658  TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
            T+ TV++IS  LH  GYQ RG E MYNGHTGR+L A  F+GPTYYQRLKHMVDDKIHSR 
Sbjct: 1026 TNTTVESISDLLHGVGYQRRGNEVMYNGHTGRKLEAQFFIGPTYYQRLKHMVDDKIHSRA 1085

Query: 718  RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
            RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERL+DQSDAYRVHVC+ CG
Sbjct: 1086 RGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLYDQSDAYRVHVCDLCG 1145

Query: 778  LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            +IAIANL+KN+FECR C+NKT I QVHIPYACKLLFQELM+M IAPRML
Sbjct: 1146 MIAIANLRKNTFECRSCRNKTQISQVHIPYACKLLFQELMSMCIAPRML 1194


>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1172

 Score = 1348 bits (3488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/832 (75%), Positives = 719/832 (86%), Gaps = 8/832 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  + CET+KAYY GYI+HRLLLCALGRR EDDRDH+GNKR+DLAGPL+  LFR 
Sbjct: 344  LLPHVGVDEECETRKAYYLGYIVHRLLLCALGRRNEDDRDHFGNKRMDLAGPLIAILFRQ 403

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT+DVR Y Q+CVD+GK++ L  A+KAKTITSGLKYSLATGNWG   A   RAGVS
Sbjct: 404  LFRKLTKDVRLYCQRCVDSGKEIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVS 463

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRL+++STLSHLRRLNSPIGREGKLAKPRQLHNS WGM+CPAETPEGQACGLVKNL+
Sbjct: 464  QVLNRLSFSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMVCPAETPEGQACGLVKNLS 523

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM  ++VGS + P+LEFLEEW  EN EEISP+VI  ATKIFVNG WVG+HRDP  LV+TL
Sbjct: 524  LMALVSVGSPSSPVLEFLEEWTMENLEEISPSVISHATKIFVNGVWVGVHRDPADLVRTL 583

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R LRR+VD+ TEVG+V DIRL+ELR+YTDYGRC RPLFIVE QR+ IKKR+I  LQ+++ 
Sbjct: 584  RELRRKVDITTEVGIVHDIRLQELRLYTDYGRCIRPLFIVEDQRMKIKKRNIEMLQEKDI 643

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL--HPEEAYADTYTHCEIHPS 358
                 W+DLV+ G IEY+DTEEEETTMISMTI DLVQARL  + E +    YTHCEIHPS
Sbjct: 644  -TGFTWNDLVSSGCIEYVDTEEEETTMISMTIEDLVQARLLANNETSVQHMYTHCEIHPS 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILG+C SIIPFPDHNQSPRNTYQSAMGKQAMG+YVTN+Q RMDTLAYVL+YPQKPLVTT
Sbjct: 703  MILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNFQLRMDTLAYVLFYPQKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            RAMEHLHFR+LPAG+N +V I CY+GYNQEDSVIMNQSSIDRG FRS+F+RS++DEEKK 
Sbjct: 763  RAMEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQ 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 538
            G+L KED   P    T+GMRHG+Y KLD DGL  PGTRVSGED+IIGKT+P+  D+    
Sbjct: 823  GSLTKEDLECPSPETTLGMRHGTYGKLDKDGLICPGTRVSGEDIIIGKTSPLPDDDPSAA 882

Query: 539  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
            ++R+T+RD S  +++SETG++DQVLLTTN  GLRFVK+RVRS R PQ+GDKFSSRHGQKG
Sbjct: 883  SNRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKG 942

Query: 599  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
            T+GMTYTQEDMP+T EG+ PDIIVNPHAIPSRMTIGQL+EC+MGKVAA MGKEGDATPFT
Sbjct: 943  TIGMTYTQEDMPFTCEGVVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMGKEGDATPFT 1002

Query: 659  DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
             VTV+NIS  LH+CGYQ RG E MYNGHTGR+L A IFLGPTYYQRLKHMVDDKIHSRGR
Sbjct: 1003 PVTVENISDMLHQCGYQKRGNEVMYNGHTGRKLEAKIFLGPTYYQRLKHMVDDKIHSRGR 1062

Query: 719  GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
            GPVQILTRQP EGRSRDGGLRFGEMERDC+I+HGA+ FLKERL DQSDAYRVHVC+ CGL
Sbjct: 1063 GPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYRVHVCQTCGL 1122

Query: 779  IAIANLKKNSFECRGCKNKTD---IVQVHIPYACKLLFQELMAMAIAPRMLT 827
            IA+ANLK  +FEC  CKN ++   +VQV +PYACKLLFQELM+MA+APR++T
Sbjct: 1123 IAVANLKNQTFEC--CKNPSERMKVVQVLLPYACKLLFQELMSMAVAPRLVT 1172


>gi|68131848|gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthus caryophyllus]
          Length = 674

 Score = 1347 bits (3485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/674 (95%), Positives = 659/674 (97%)

Query: 32  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 91
           GRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLTRDVRAYVQK VD GKD+NL FAIKA
Sbjct: 1   GRREEDDRDHYGNKRLDLAGPLLGGLFRQLFRKLTRDVRAYVQKNVDQGKDLNLTFAIKA 60

Query: 92  KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 151
           KTITSGLKYSLATGNWG ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 61  KTITSGLKYSLATGNWGAANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 120

Query: 152 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 211
           RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW TENFEEISP
Sbjct: 121 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISP 180

Query: 212 AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 271
           AVIPQATKIFVNG WVGIHRDP++LVKTLR LRRRVDVNTEVGVVRDIRLKELRIYTDYG
Sbjct: 181 AVIPQATKIFVNGGWVGIHRDPDLLVKTLRELRRRVDVNTEVGVVRDIRLKELRIYTDYG 240

Query: 272 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 331
           RCSRPLFIVEKQRLLIKK+DI ALQQRE+PEDGGWHDLVAKGFIEYIDTEEEETTMISMT
Sbjct: 241 RCSRPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 300

Query: 332 INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
           INDLV ARL+PEE+Y+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 301 INDLVSARLNPEESYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 360

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV
Sbjct: 361 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 420

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA
Sbjct: 421 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 480

Query: 512 PPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 571
           PPGTRVSGEDVIIGKTTP+S +EAQG A+RY+R+DHSISLRHSE+G+VDQVLLTTNADGL
Sbjct: 481 PPGTRVSGEDVIIGKTTPLSPEEAQGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGL 540

Query: 572 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 631
           RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM
Sbjct: 541 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 600

Query: 632 TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
           TIGQLIECIMGKVAAH+GKEGDATPFTDVTVDNISKAL KCGYQMRGFETMYNGHTGR+L
Sbjct: 601 TIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALQKCGYQMRGFETMYNGHTGRKL 660

Query: 692 TAMIFLGPTYYQRL 705
           +AMIFLGPTYYQRL
Sbjct: 661 SAMIFLGPTYYQRL 674


>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
 gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
          Length = 1178

 Score = 1334 bits (3452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/831 (74%), Positives = 716/831 (86%), Gaps = 7/831 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  + CETKKAY+ GYI++RLLLCALGR+ EDDRDH+GNKR+DL+GPL+  LFR 
Sbjct: 351  LLPHVGVNEGCETKKAYFLGYIVNRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQ 410

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRK+T+DVR Y Q+C+D+GKD+ L  A+KAKTITSGLKYSLATGNWG   A   RAGVS
Sbjct: 411  LFRKVTKDVRLYSQRCIDSGKDIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVS 470

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRL+++STLSHLRRLNSPIGREGKLAKPRQLHNS WGM+CPAETPEGQA GLVKNL+
Sbjct: 471  QVLNRLSFSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLS 530

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM  ++VGS + P+LEFLEEW  EN EEISP+VI  ATKIFVNG WVG+HR+P  LV+TL
Sbjct: 531  LMCLVSVGSPSAPLLEFLEEWSMENLEEISPSVIVNATKIFVNGVWVGVHREPAQLVQTL 590

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R LRR++D+  EVGVV DI L+ELR+YTDYGRC RPLFIVE   L+IKK+DI  L ++E 
Sbjct: 591  RNLRRKLDITIEVGVVHDIALRELRLYTDYGRCIRPLFIVEDNHLVIKKKDIQMLYEKEI 650

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA-YADTYTHCEIHPSL 359
                 W+DLVA G IEY+DTEEEETTMI+MTI++LV  R++ E       YTHCEIHPS+
Sbjct: 651  -TGYTWNDLVATGCIEYVDTEEEETTMIAMTIDELVGQRINAEPGGVKHMYTHCEIHPSM 709

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+YVTN+Q RMDTLAYVL+YPQKPLVTTR
Sbjct: 710  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNFQIRMDTLAYVLFYPQKPLVTTR 769

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            AMEHLHFR+LPAG+N +V I CY+GYNQEDSVIMNQSSIDRG FRS+F+RS++DEEKK G
Sbjct: 770  AMEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQG 829

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
            +L KE+  RP R  T+GMRHG+YDKLDDDGL  PGTRVSGED+IIGKT+P+ +D+    +
Sbjct: 830  SLTKEELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGEDIIIGKTSPLPEDDPSAVS 889

Query: 540  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
             R+T+RD S  +++SETG++DQVLLTTN  GLRFVK+RVRS R PQ+GDKFSSRHGQKGT
Sbjct: 890  KRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKGT 949

Query: 600  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
            +GMTYTQEDMP+T EGI PDIIVNPHAIPSRMTIGQL+EC+MGKVAA MGKEGDATPFT 
Sbjct: 950  IGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMGKEGDATPFTP 1009

Query: 660  VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 719
            VTV++IS  LH CGYQ RG E MYNGHTGR+L A IFLGPTYYQRLKHMVDDKIHSRGRG
Sbjct: 1010 VTVESISDMLHMCGYQKRGNEVMYNGHTGRKLEAKIFLGPTYYQRLKHMVDDKIHSRGRG 1069

Query: 720  PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
            PVQILTRQP EGRSRDGGLRFGEMERDC+I+HGA+ FLKERL DQSDAYR+HVCE CGLI
Sbjct: 1070 PVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYRIHVCETCGLI 1129

Query: 780  AIANLKKNSFECRGCKN---KTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            A+ANLK  +FEC  CKN   +T +VQV +PYACKLLFQELM+MA+APR++T
Sbjct: 1130 AVANLKNQTFEC--CKNPSERTKVVQVMMPYACKLLFQELMSMAVAPRLVT 1178


>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1174

 Score = 1326 bits (3432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/833 (74%), Positives = 720/833 (86%), Gaps = 9/833 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  + CETKKAY+ GY+IHRLLLC+LGRR EDDRDHYGNKRLDL GPLL  LFR 
Sbjct: 344  LLPHVGVREDCETKKAYFLGYMIHRLLLCSLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQ 403

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT+DVR Y Q+C+D+GK++ LQ AIKAKTIT GLKYSLATGNWG   AA  RAGVS
Sbjct: 404  LFRKLTKDVRLYCQRCIDSGKEIQLQLAIKAKTITQGLKYSLATGNWGSQGAADIRAGVS 463

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRL+Y+STLSHLRR+NSPIGREGKLAKPRQLHNS WGM+CPAETPEGQA GLVKNLA
Sbjct: 464  QVLNRLSYSSTLSHLRRINSPIGREGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLA 523

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM  ++VGS + PILEFL+EW  EN EEISP++I ++TKIF+NG WVG+HR+P  LV+TL
Sbjct: 524  LMALVSVGSPSEPILEFLDEWTMENLEEISPSLIAESTKIFLNGVWVGVHRNPADLVRTL 583

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-QRLLIKKRDIIALQQRE 299
            R+LRR+ D+++ V VV DIRLKELR+YTDYGRC+RPLFIVE  Q+L IKK+ I  L +++
Sbjct: 584  RKLRRQCDIDSSVSVVHDIRLKELRLYTDYGRCTRPLFIVEDDQKLKIKKQHIELLTEKD 643

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE--AYADTYTHCEIHP 357
                  W++LV  GFIEY+DTEEEETTMISMTI+DLV  R   E+    A  YTHCEIHP
Sbjct: 644  V-TGYTWNELVTSGFIEYVDTEEEETTMISMTIDDLVAGRHAVEQNTGVAINYTHCEIHP 702

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+YVTNYQ RMDTL YV++YPQKPLVT
Sbjct: 703  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQIRMDTLGYVMFYPQKPLVT 762

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            TRAME+LHFR+LPAG NA+VAI CY+GYNQEDSV+MNQS+IDRG FRSL++RS++DEEKK
Sbjct: 763  TRAMEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKK 822

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
             G+L +E+F RPDR   +GMRHG+YDKLDDDGL  PGTRVSG+D+IIGKT P+ +D+   
Sbjct: 823  QGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLICPGTRVSGDDIIIGKTAPLPEDDTAV 882

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
             + R++++D S  ++H+ETG++DQVLLTTN  GLRFVK+RVRS+R PQ+GDKFSSRHGQK
Sbjct: 883  LSKRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQK 942

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GTVGMTYTQEDMP+T EGITPDIIVNPHAIPSRMTIGQL+ECIMGKVAA MGKEGDATPF
Sbjct: 943  GTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGKEGDATPF 1002

Query: 658  TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
            T VT ++IS  LHKCGYQ RG E MYNGHTGR L A IF+GPTYYQRLKHMVDDKIHSRG
Sbjct: 1003 TPVTAEDISSMLHKCGYQKRGNEVMYNGHTGRMLDAQIFIGPTYYQRLKHMVDDKIHSRG 1062

Query: 718  RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
            RGPVQILTRQP EGRSRDGGLRFGEMERDC+++HGA+ FLKERL DQSDAYR+HVC+ CG
Sbjct: 1063 RGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSDAYRIHVCQKCG 1122

Query: 778  LIAIANLKKNSFECRGCKN---KTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            LIA+ANLK  +FEC  CKN   +T +VQV +PYACKLLFQELM+MAIAPR++T
Sbjct: 1123 LIAVANLKNQTFEC--CKNPSERTSVVQVMVPYACKLLFQELMSMAIAPRLIT 1173


>gi|68131836|gb|AAY85196.1| RNA polymerase II second largest subunit [Chimonanthus praecox]
          Length = 906

 Score = 1322 bits (3422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/661 (94%), Positives = 648/661 (98%), Gaps = 1/661 (0%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVGTG++CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGTGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT+TSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTVTSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA+PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LVKTL
Sbjct: 427 LMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R LRRRVDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI  LQQRE+
Sbjct: 487 RLLRRRVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRET 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            E+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV ARL+PEEAY+DTYTHCEIHPSLI
Sbjct: 547 QEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPEEAYSDTYTHCEIHPSLI 605

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 606 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 665

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 666 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 725

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+QDE+QGQ S
Sbjct: 726 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQGQTS 785

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR+PQIGDKFSSRHGQKGTV
Sbjct: 786 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTV 845

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 846 GMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 905

Query: 661 T 661
           T
Sbjct: 906 T 906


>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
 gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
          Length = 999

 Score = 1278 bits (3307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/833 (72%), Positives = 699/833 (83%), Gaps = 30/833 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPHVG  + CETKKAY+ GY+IHRLLLC+LGRR EDDRDHYGNKRLDL GPLL  LFR 
Sbjct: 190 LLPHVGVREDCETKKAYFLGYMIHRLLLCSLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQ 249

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLT+DVR Y Q+C+D+GK++ LQ AIKAKTIT GLKYSLATGNWG   A   RAGVS
Sbjct: 250 LFRKLTKDVRLYCQRCIDSGKEIQLQLAIKAKTITQGLKYSLATGNWGSQGAQDIRAGVS 309

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRL+Y+STLSHLRR+NSPIGREGKLAKPRQLHNS WGM+CPAETPEGQA GLVKNLA
Sbjct: 310 QVLNRLSYSSTLSHLRRINSPIGREGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLA 369

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LM  ++VGS + PILEFL+EW  EN EEISP++I ++TKIF+NG WVG+HRDP  LV+TL
Sbjct: 370 LMALVSVGSPSEPILEFLDEWTMENLEEISPSLIAESTKIFLNGVWVGVHRDPADLVRTL 429

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQRE 299
           R+LRR+ DV++ V VV DIRLKELR+YTDYGRC+RPLFIV + Q+L IKK+ I  L +++
Sbjct: 430 RKLRRQCDVDSSVSVVHDIRLKELRLYTDYGRCTRPLFIVDDDQKLRIKKQHIELLTEKD 489

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE--AYADTYTHCEIHP 357
                 W++LV  GFIEY+DTEEEETTMISMTI+DL  AR   +     A  YTHCEIHP
Sbjct: 490 V-TGYSWNELVTSGFIEYVDTEEEETTMISMTIDDLAAARQSADRKTGVAIRYTHCEIHP 548

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+YVTNYQ RMDTL YVL+YPQKPLVT
Sbjct: 549 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQIRMDTLGYVLFYPQKPLVT 608

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TRAME+LHFR+LPAG NA+VAI CY+GYNQEDSV+MNQS+IDRG FRSL++RS++DEEKK
Sbjct: 609 TRAMEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKK 668

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
            G+L +E+F RPDR   +GMRHG+YDKLDDDGL      +S                   
Sbjct: 669 QGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLIYDSAVLS------------------- 709

Query: 538 QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
              R++++D S  ++H+ETG++DQVLLTTN  GLRFVK+RVRS+R PQ+GDKFSSRHGQK
Sbjct: 710 --KRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQK 767

Query: 598 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
           GTVGMTYTQEDMP+T EGITPDIIVNPHAIPSRMTIGQL+ECIMGKVAA MGKEGDATPF
Sbjct: 768 GTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGKEGDATPF 827

Query: 658 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
           T VT ++IS  LHKCGYQ RG E MYNGHTGR L A IF+GPTYYQRLKHMVDDKIHSRG
Sbjct: 828 TPVTAEDISTMLHKCGYQKRGNEVMYNGHTGRMLDAQIFIGPTYYQRLKHMVDDKIHSRG 887

Query: 718 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
           RGPVQILTRQP EGRSRDGGLRFGEMERDC+++HGA+ FLKERL DQSDAYR+HVC+ CG
Sbjct: 888 RGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSDAYRIHVCQKCG 947

Query: 778 LIAIANLKKNSFECRGCKN---KTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
           LIA+ANLK  +FEC  CKN   +T +VQV +PYACKLLFQELM+MAIAPR++T
Sbjct: 948 LIAVANLKNQTFEC--CKNPSERTSVVQVMVPYACKLLFQELMSMAIAPRLIT 998


>gi|68131890|gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
          Length = 865

 Score = 1265 bits (3273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/627 (95%), Positives = 616/627 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 239 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 298

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 299 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 358

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 359 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 418

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTL
Sbjct: 419 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 478

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES
Sbjct: 479 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRES 538

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            E+GGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY++TYTHCEIHPSLI
Sbjct: 539 SEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLI 598

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 599 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 658

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 659 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 718

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++QGQ+S
Sbjct: 719 LVKEDFGRPSRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQGQSS 778

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 779 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 838

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAI 627
           GMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 839 GMTYTQEDMPWTVEGITPDIIVNPHAI 865


>gi|68300794|gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
          Length = 873

 Score = 1263 bits (3268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/627 (94%), Positives = 615/627 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LVKTL
Sbjct: 427 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES
Sbjct: 487 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            EDGGWHDLVAKGFIEY+DTEEEETTMISMTINDL+ A+L+PEEAY++TYTHCEIHPSLI
Sbjct: 547 HEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLISAKLNPEEAYSETYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+AQGQAS
Sbjct: 727 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 786

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 787 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 846

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAI 627
           GMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 847 GMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|68131876|gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
          Length = 873

 Score = 1263 bits (3267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/627 (94%), Positives = 616/627 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LVKTL
Sbjct: 427 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES
Sbjct: 487 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           PEDGGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY+DTYTHCEIHPSLI
Sbjct: 547 PEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSDTYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGIN+IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGINSIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+QD+AQG +S
Sbjct: 727 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDDAQGVSS 786

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 787 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 846

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAI 627
           GMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 847 GMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|68131860|gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
          Length = 874

 Score = 1261 bits (3264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/628 (94%), Positives = 617/628 (98%), Gaps = 1/628 (0%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTL
Sbjct: 427 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES
Sbjct: 487 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           P+DGGWHDLVAKGFIEY+DTEEEETTMISMTINDL+ AR++PEEAY++TYTHCEIHPSLI
Sbjct: 547 PDDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLITARINPEEAYSETYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA- 539
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E+QGQA 
Sbjct: 727 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEESQGQAS 786

Query: 540 SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           SRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGT
Sbjct: 787 SRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGT 846

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAI 627
           VGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 847 VGMTYTQEDMPWTVEGITPDIIVNPHAI 874


>gi|66806179|ref|XP_636812.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
 gi|74896933|sp|Q54J75.1|RPB2_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|60465215|gb|EAL63310.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
          Length = 1170

 Score = 1261 bits (3262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/831 (71%), Positives = 700/831 (84%), Gaps = 9/831 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +F ETKKA+YFGYI HRLLL +L RR  DDRDH+ NKRLDLAGPLLG LFR 
Sbjct: 345  MLPHVSVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQ 404

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LF+KLT+DVR Y+Q+C+D  K+     A+K+KTITSGLKYSLATGNWG + + GT++GV+
Sbjct: 405  LFKKLTKDVRLYLQRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVA 464

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA
Sbjct: 465  QVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLA 524

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISP-AVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +M YI+VGSA+ PILEFLEEW TEN EEIS  + I  ATKIFVNG WVGIH  P+ L+ T
Sbjct: 525  MMSYISVGSASQPILEFLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLST 584

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            LR LRR  DV+ EV VVRDIR KELR+YTD GRC RPLF+V+  ++ IKK+ I  L   +
Sbjct: 585  LRLLRRCGDVSVEVSVVRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINND 644

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
               +  W DL+++G +EYID EEEET +I+MT  DLV     P E    TYTHCEIHPS+
Sbjct: 645  ---EYKWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPM---PNEQIVHTYTHCEIHPSM 698

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+C SIIPFPDHNQSPRNTYQ+AMGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR
Sbjct: 699  ILGICCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTR 758

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+LHFR+LPAG N  VAIACYSGYNQEDSVI+NQS+IDRG FRS+F+R+Y+DE+KK  
Sbjct: 759  SMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQT 818

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQG 537
            +L++E F +P+R    GMRHGSY+K+DDDGL  PG RV+G+D+IIGKTTP+  S D+   
Sbjct: 819  SLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGP 878

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
            +  R+T+RD S +LR SETG+VDQV+LTT+ +G +F KVRVRS+R+PQIGDKFSSRHGQK
Sbjct: 879  KTRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQK 938

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT GM Y QED+P+TVEGI PDIIVNPHAIPSRMTIGQLIEC++GKV+A  G EGDATPF
Sbjct: 939  GTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPF 998

Query: 658  TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
            TDVTV+ IS+ALHK GYQM G E MYNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR 
Sbjct: 999  TDVTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRS 1058

Query: 718  RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
            RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERLFDQSD+YRVH+C+ CG
Sbjct: 1059 RGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICG 1118

Query: 778  LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            LIAIANLKKNSFECR CKNKT I Q+ +PYA KLLFQELM+M+IAPRM T+
Sbjct: 1119 LIAIANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSIAPRMFTQ 1169


>gi|68131824|gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
          Length = 873

 Score = 1260 bits (3261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/627 (94%), Positives = 615/627 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS W MMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWXMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LVKTL
Sbjct: 427 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES
Sbjct: 487 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            E+GGWHDLVAKGFIEY+DTEEEETTMISMTINDL+ ARL+PEEAY++TYTHCEIHPSLI
Sbjct: 547 HEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLITARLNPEEAYSETYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+AQGQAS
Sbjct: 727 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 786

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 787 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 846

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAI 627
           GMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 847 GMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|68131850|gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa]
          Length = 873

 Score = 1259 bits (3259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/627 (94%), Positives = 614/627 (97%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+PE+LVKTL
Sbjct: 427 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPELLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKRDI ALQ RES
Sbjct: 487 RALRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           P++GGWHDLVAKG+IEY+DTEEEETTMISMTINDLV ARL+PEEAY++TYTHCEIHPSLI
Sbjct: 547 PDEGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 667 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 726

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE+QGQAS
Sbjct: 727 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQAS 786

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 787 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 846

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAI 627
           GMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 847 GMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1215

 Score = 1258 bits (3256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/852 (68%), Positives = 695/852 (81%), Gaps = 24/852 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT    ET+K+Y+FGY+IHRLLL AL RR  DDRDHYG KR+DLAGPL+ GLFR+
Sbjct: 366  LLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRI 425

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRDV  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  A   RAGV
Sbjct: 426  LFRKLTRDVAKYLQKCIESSREFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGV 485

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 486  SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 545

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS+A P++ FLEEW  EN EE+S   I  +TK+FVNG W+GIHRDP  L+ +
Sbjct: 546  ALMSYISVGSSANPLIMFLEEWAMENLEELSATSIADSTKVFVNGVWIGIHRDPGELITS 605

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+++RR VD++ EV +VRDIR KELR+YTD GRC RPLF+VE Q+L + + D+  LQ  +
Sbjct: 606  LKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLRLTREDVGRLQ--D 663

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA-------------- 345
              +D GW DL+A+G +EY+D +EEET MI MT  DL ++R+  +                
Sbjct: 664  PDDDFGWQDLIAEGIVEYVDADEEETAMICMTPEDLAESRMATQYGAPLQQTRSLASRVK 723

Query: 346  -----YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
                 Y  T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q R
Sbjct: 724  SQTGTYTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQMR 783

Query: 401  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
            MDTLA +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDR
Sbjct: 784  MDTLANILYYPQKPLTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDR 843

Query: 461  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
            G FRSLFFR+Y D EKK G +  E+F +P R +T+ ++HG+Y+KL++DGL  PGTRVSG+
Sbjct: 844  GLFRSLFFRTYMDAEKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIAPGTRVSGD 903

Query: 521  DVIIGKTTPI-SQDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
            D+IIGKT PI ++ E  GQ  + + +RD S  LR +ETG+VDQV+LTTN DGL+FVKVRV
Sbjct: 904  DIIIGKTAPIPAESEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRV 963

Query: 579  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
            RS R+PQ+GDKF+SRHGQKGT+G+TY QED P++ EGITPD+I+NPHAIPSRMTIG LIE
Sbjct: 964  RSTRVPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHLIE 1023

Query: 639  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
            C++GKV+   G EGDATPFTDVTV+ IS+AL   GYQ RGFE MYNG TGR+L A +FLG
Sbjct: 1024 CLLGKVSTLTGNEGDATPFTDVTVEAISQALQAQGYQQRGFEVMYNGFTGRKLNAQVFLG 1083

Query: 699  PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 758
            PTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLK
Sbjct: 1084 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAQFLK 1143

Query: 759  ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 818
            ERLFD SDAYRVHVC+ CGL+AIANLKKN+FECR CKNKT I Q+HIPYACKLLFQELMA
Sbjct: 1144 ERLFDASDAYRVHVCDICGLMAIANLKKNNFECRSCKNKTRISQIHIPYACKLLFQELMA 1203

Query: 819  MAIAPRMLTKED 830
            M IAPRM    D
Sbjct: 1204 MNIAPRMFVDAD 1215


>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1193

 Score = 1258 bits (3254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/852 (68%), Positives = 696/852 (81%), Gaps = 24/852 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT    ET+K+Y+FGY+IHRLLL AL RR  DDRDHYG KR+DLAGPL+ GLFR+
Sbjct: 344  LLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRL 403

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRDV  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  A   RAGV
Sbjct: 404  LFRKLTRDVAKYLQKCIESSREFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGV 463

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 464  SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 523

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS+A P++ FLEEW  EN EE+S   I  +TK+FVNG W+GIHRDP  L+ +
Sbjct: 524  ALMSYISVGSSANPLIMFLEEWAMENLEELSATSIADSTKVFVNGVWIGIHRDPGELITS 583

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+++RR VD++ EV +VRDIR KELR+YTD GRC RPLF+VE Q+L + + D+  LQ  +
Sbjct: 584  LKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLRLTRDDVGRLQ--D 641

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA-------------- 345
              +D GW DL+A+G +EY+D +EEET MI MT  DL ++R+  +                
Sbjct: 642  PDDDFGWQDLIAEGIVEYVDADEEETAMICMTPEDLSESRMASQYGAPLQQTRSLASRVK 701

Query: 346  -----YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
                 YA T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q R
Sbjct: 702  SQTGTYAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQMR 761

Query: 401  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
            MDTLA +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDR
Sbjct: 762  MDTLANILYYPQKPLTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDR 821

Query: 461  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
            G FRSLFFR+Y D EKK G +  E+F +P R +T+ ++HG+Y+KL++DGL  PGTRVSG+
Sbjct: 822  GLFRSLFFRTYMDAEKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIAPGTRVSGD 881

Query: 521  DVIIGKTTPI-SQDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
            D+IIGKT PI ++ E  GQ  + + +RD S  LR +ETG+VDQV+LTTN DGL+FVKVRV
Sbjct: 882  DIIIGKTAPIPAESEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRV 941

Query: 579  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
            RS R+PQ+GDKF+SRHGQKGT+G+TY QED P++ EGITPD+I+NPHAIPSRMTIG +IE
Sbjct: 942  RSTRVPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIE 1001

Query: 639  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
            C++GKV+   G EGDATPFTDVTV+ IS+AL   GYQ RGFE MYNG TGR+L A +FLG
Sbjct: 1002 CLLGKVSTLTGNEGDATPFTDVTVEAISQALQAQGYQQRGFEVMYNGFTGRKLNAQVFLG 1061

Query: 699  PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 758
            PTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLK
Sbjct: 1062 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAQFLK 1121

Query: 759  ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 818
            ERLFD SDAYRVHVC+ CGL+AIANLKKN+FECR CKNKT I Q+HIPYACKLLFQELMA
Sbjct: 1122 ERLFDASDAYRVHVCDICGLMAIANLKKNNFECRSCKNKTRISQIHIPYACKLLFQELMA 1181

Query: 819  MAIAPRMLTKED 830
            M IAPRM    D
Sbjct: 1182 MNIAPRMFVDAD 1193


>gi|68131852|gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
          Length = 868

 Score = 1255 bits (3248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/627 (94%), Positives = 614/627 (97%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 242 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 301

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAK ITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 302 LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKPITSGLKYSLATGNWGQANAAGTRAGVS 361

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 362 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 421

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LVKTL
Sbjct: 422 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTL 481

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES
Sbjct: 482 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRES 541

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           PE+GGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY+DTYTHCEIHPSLI
Sbjct: 542 PEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSDTYTHCEIHPSLI 601

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 602 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 661

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGIN+IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 662 MEHLHFRQLPAGINSIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 721

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           L+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+QD+AQG +S
Sbjct: 722 LIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDDAQGVSS 781

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 782 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 841

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAI 627
           GMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 842 GMTYTQEDMPWTVEGITPDIIVNPHAI 868


>gi|330796313|ref|XP_003286212.1| RNA polymerase II core subunit [Dictyostelium purpureum]
 gi|325083799|gb|EGC37242.1| RNA polymerase II core subunit [Dictyostelium purpureum]
          Length = 1169

 Score = 1255 bits (3247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/829 (71%), Positives = 697/829 (84%), Gaps = 8/829 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +F ETKKA+YFGYI+HRLLL +L RR  DDRDH+ NKRLDLAGPLLG LFR 
Sbjct: 346  MLPHVSVAEFYETKKAFYFGYIVHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQ 405

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LF+KLT+DVR Y+Q+C+D  K+     A+K+KTITSGLKYSLATGNWG + + GT++GV+
Sbjct: 406  LFKKLTKDVRLYLQRCIDKDKEFIPSSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVA 465

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WG++CP+ETPEGQACGLVKNL+
Sbjct: 466  QVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLS 525

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISP-AVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +M YI+VGSA+ PILEFLEEW TEN EEIS  + I  ATKIFVNG WVGIH  P+ L+ T
Sbjct: 526  MMSYISVGSASQPILEFLEEWTTENLEEISDLSSIFTATKIFVNGMWVGIHHQPDKLLGT 585

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            LR LRR  DV+ EV VVRDIR KELR+YTD GRC RPLF+V+  +L +KK  I  L    
Sbjct: 586  LRLLRRCGDVSVEVSVVRDIREKELRLYTDPGRCCRPLFVVQDNKLQVKKHHISKLIN-- 643

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
            + ++  W DL+ +G IEYID EEEET +I+MT +DLV       E    TYTHCEIHPS+
Sbjct: 644  NSDEYKWQDLLNEGIIEYIDAEEEETVLIAMTPDDLVPL---ANEQIVHTYTHCEIHPSM 700

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILGVC SIIPFPDHNQSPRNTYQ+AMGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR
Sbjct: 701  ILGVCCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTR 760

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+LHFR+LPAG NA VAIACYSGYNQEDSVI+NQS+IDRG FRS+F+R+Y+DE+KK  
Sbjct: 761  SMEYLHFRELPAGQNACVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQT 820

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQG 537
            +L++E F +PDR    GMRHGSY+K+D+DGL  PG RV+G+D+IIGKTTP+   +D+   
Sbjct: 821  SLMEEQFEKPDRDTCAGMRHGSYEKIDEDGLVAPGVRVAGDDIIIGKTTPLPPQEDDLGP 880

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
            +  R+T+RD S +LR SE G+VDQV+LTT+ +G +F KVRVRS+R+PQIGDKFSSRHGQK
Sbjct: 881  KTRRHTKRDSSTALRSSENGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQK 940

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT GM Y QED+PWTVEGI PDI+VNPHAIPSRMTIGQLIEC++GKV+A  G EGDATPF
Sbjct: 941  GTCGMAYRQEDLPWTVEGIVPDIVVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPF 1000

Query: 658  TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
            TDVTV+ IS+ALHK GYQM G E MYNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR 
Sbjct: 1001 TDVTVEAISQALHKVGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRS 1060

Query: 718  RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
            RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG++ FL+ERLFDQSD YRVHVC+ CG
Sbjct: 1061 RGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGSAAFLRERLFDQSDHYRVHVCDICG 1120

Query: 778  LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            LIAIANLKKNSFECR CKNKT I QV +PYA KLLFQELM+M+IAPRM 
Sbjct: 1121 LIAIANLKKNSFECRRCKNKTQISQVRMPYAAKLLFQELMSMSIAPRMF 1169


>gi|68131878|gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
          Length = 875

 Score = 1251 bits (3237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/629 (94%), Positives = 613/629 (97%), Gaps = 2/629 (0%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYI+HRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVR YVQKCVD GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRGYVQKCVDQGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSP GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPTGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEE-ISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           LMVYITVGSAAYPILEFLEEW TENFEE ISPAVIPQA KIFVNGCWVGIHRDP++LVKT
Sbjct: 427 LMVYITVGSAAYPILEFLEEWSTENFEEEISPAVIPQAAKIFVNGCWVGIHRDPDLLVKT 486

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           LR+LRRRVDVNTEVGVVRDI LKELRIYTDYGRCSRPLFIV+KQRLLIKKRDI ALQ RE
Sbjct: 487 LRQLRRRVDVNTEVGVVRDIHLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIRALQLRE 546

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
           +PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL+ AR++PEEAY++TYTHCEIHPSL
Sbjct: 547 TPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLITARVNPEEAYSETYTHCEIHPSL 606

Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
           ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR
Sbjct: 607 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 666

Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
           AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG
Sbjct: 667 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 726

Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG-Q 538
           TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT+VSGEDVIIGKTTP++ DEAQG  
Sbjct: 727 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTKVSGEDVIIGKTTPLAPDEAQGPN 786

Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
           A+RYTRRDHSISLRHSE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG
Sbjct: 787 AARYTRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 846

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
           TVGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 847 TVGMTYTQEDMPWTVEGITPDIIVNPHAI 875


>gi|40644726|emb|CAD92665.1| RNA polymerase II [Mimulus guttatus]
          Length = 629

 Score = 1247 bits (3227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/629 (95%), Positives = 617/629 (98%), Gaps = 1/629 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR+P+MLV TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61  WVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+DI ALQQRESP+DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+P EA
Sbjct: 121 LIKKKDIQALQQRESPDDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPGEA 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181 YSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYR E KKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301 LFFRSYRAEXKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 360

Query: 526 KTTPISQDEAQGQA-SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           KTTPI+ DEAQGQA +RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP
Sbjct: 361 KTTPITPDEAQGQANARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 420

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           QIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIVNPHAIPSRMTIGQLIEC+MGKV
Sbjct: 421 QIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGINPDIIVNPHAIPSRMTIGQLIECVMGKV 480

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG+ETMYNGHTGR+LT+MIFLGPTYYQR
Sbjct: 481 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGYETMYNGHTGRKLTSMIFLGPTYYQR 540

Query: 705 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 764
           LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQ
Sbjct: 541 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQ 600

Query: 765 SDAYRVHVCEHCGLIAIANLKKNSFECRG 793
           SDAYR+HVCE CGLIAIANLKKNSFECR 
Sbjct: 601 SDAYRIHVCEKCGLIAIANLKKNSFECRA 629


>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
          Length = 1175

 Score = 1241 bits (3210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/832 (70%), Positives = 685/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLKYSLATGNWGDQKKAHLARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IV+  +LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVDNGKLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F RP R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 823  FCDQEEQFERPTRNTCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPDNEDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPLQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ ++FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNSTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
          Length = 1173

 Score = 1238 bits (3204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/832 (70%), Positives = 673/832 (80%), Gaps = 11/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLL  ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGISDFCETKKAYFLGYMVHRLLSAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR L ++VR Y QK +D GKD NL+ AIK + IT GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  LFRNLMKEVRLYAQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTYASTLSHLRRLNSPIGR+GKLAKPRQLHNS WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTYASTLSHLRRLNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISP+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPSAIANATKIFVNGCWVGIHRDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+LL+K R I  L  +
Sbjct: 587  LRKLRRQMDIIVSEVSMVRDIREREIRIYTDAGRICRPLLIVENQKLLLKTRHIDQL--K 644

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E      W DLVA G +EYID  EEET M++M   DL        E Y  TYTHCEIHP+
Sbjct: 645  EDYNSYSWQDLVASGVVEYIDPLEEETIMLAMFPEDLQDK----GEQYCSTYTHCEIHPA 700

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 701  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 760

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGINAIVAI+ Y+GYNQEDS+I+N+SS+DRGFFRS+F+RSY+D E K 
Sbjct: 761  RSMEYLRFRELPAGINAIVAISTYTGYNQEDSIIVNKSSVDRGFFRSVFYRSYKDAENKS 820

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F RP+RS   GMRH  YDKLDDDGL  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 821  AYDQEETFERPERSFCTGMRHAIYDKLDDDGLVSPGIRVSGDDVVIGKTVMLPENEDELE 880

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+ +RD S  LR SETG+VDQV+++ N DG +F K+RVRSVR+PQIGDKF+SRHGQ
Sbjct: 881  GTTQRFKKRDVSTFLRTSETGIVDQVMISINQDGYKFTKIRVRSVRVPQIGDKFASRHGQ 940

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+TY  EDMP+T EG+ PD+IVNPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 941  KGTCGITYRAEDMPFTSEGVQPDLIVNPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1000

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  LH+ GYQ RG E +YNGHTGR+L   +F GPTYYQRLKHMVDDKIHS
Sbjct: 1001 FNDTVNVQKISNLLHEYGYQQRGNEVLYNGHTGRKLNTQVFFGPTYYQRLKHMVDDKIHS 1060

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YRVHVC  
Sbjct: 1061 RARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNL 1120

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ ++FECRGCKNKT I QV +PYACKLLFQELM+M+IAPRM+ 
Sbjct: 1121 CGLIAIANLRSHTFECRGCKNKTHISQVRMPYACKLLFQELMSMSIAPRMMV 1172


>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
          Length = 1174

 Score = 1238 bits (3202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/831 (70%), Positives = 683/831 (82%), Gaps = 12/831 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GYI+HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 349  MLPHVGVSDFCETKKAYFLGYIVHRLLLAALGRRECDDRDHYGNKRLDLAGPLLAFLFRG 408

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR LT++VR + QK +D GKD NL+ AI+ +TIT GLKYSLATGNWG Q  A   RAGV
Sbjct: 409  LFRNLTKEVRLFSQKFIDQGKDFNLELAIRTRTITDGLKYSLATGNWGDQKKAHQARAGV 468

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ STLSHLRRLNSP+GR+GKLA+PRQLHN+QWGM+CPAETPEG   GLVKNL
Sbjct: 469  SQVLNRLTFVSTLSHLRRLNSPVGRDGKLARPRQLHNTQWGMICPAETPEGSCVGLVKNL 528

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 529  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIQDATKIFVNGCWVGIHRDPEQLMNT 588

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            L++LRR++D+  +EV +VRDI  +E+RIYTD GR  RPL IVE Q+LL+KKR I  L++R
Sbjct: 589  LKKLRRQMDIIVSEVSMVRDISDREIRIYTDAGRICRPLLIVENQKLLLKKRHIDLLKER 648

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW DLVA G +EYIDT EEET M+SM+ + L       E  Y  +YTHCEIHPS
Sbjct: 649  EY-NNYGWQDLVASGVVEYIDTLEEETIMLSMSPDQL------QESGYCSSYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VL+YPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGINAIVAIA Y+GYNQEDSVI+N+ ++DRGFFRS+F+RSY+D E K 
Sbjct: 762  RSMEYLRFRELPAGINAIVAIASYTGYNQEDSVILNEGAVDRGFFRSVFYRSYKDSESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK--TTPISQDEAQ 536
            G   +E F RPD ++  GMR   YDKLDDDG+  PGTRVSG+DV+IGK  T P ++DE  
Sbjct: 822  GLDQEELFERPDPNHVQGMRMAVYDKLDDDGIIAPGTRVSGDDVLIGKTLTLPENEDELD 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
             QA R+T+RD S+ +R SETG++DQV++T N +G +F K+RVR+V+ PQIGDKF+SRHGQ
Sbjct: 882  AQAKRFTKRDCSVFMRRSETGIIDQVMVTINQEGYKFCKIRVRTVKTPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E ++NGHTGR+L A IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVRKISDLLQDYGYHLRGNEVLFNGHTGRKLNAQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FLKERLF+ SD YRVHVC  
Sbjct: 1062 RARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEISDPYRVHVCNI 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            CGLIAIANL+ N+FECRGCKNKT I QV +PYACKLLFQELM+M+IAPRM+
Sbjct: 1122 CGLIAIANLRNNTFECRGCKNKTQISQVRMPYACKLLFQELMSMSIAPRMM 1172


>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
          Length = 1176

 Score = 1237 bits (3201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 684/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMST 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  RLL+KKR +  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKRHVDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW DLVA   +EYIDT EEET MI+M+++DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQDLVASSAVEYIDTLEEETVMIAMSLDDLRQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F R+Y+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFMRAYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE +
Sbjct: 823  VGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTRRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E M+NGH+GR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISALLQEYGYQLRGNEVMFNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
          Length = 1151

 Score = 1237 bits (3201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 684/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 322  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 381

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 382  MFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 441

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 442  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 501

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 502  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMST 561

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  RLL+KKR +  L++R
Sbjct: 562  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKRHVDMLKER 621

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW DLVA   +EYIDT EEET MI+M+++DL Q +   E AY  TYTHCEIHP+
Sbjct: 622  EY-NNYGWQDLVASSAVEYIDTLEEETVMIAMSLDDLRQDK---EYAYCTTYTHCEIHPA 677

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 678  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 737

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F R+Y+D E K 
Sbjct: 738  RSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFMRAYKDSESKR 797

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE +
Sbjct: 798  VGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPENDDELE 857

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 858  GTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 917

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 918  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 977

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E M+NGH+GR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 978  FNDAVNVQKISALLQEYGYQLRGNEVMFNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHS 1037

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1038 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1097

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1098 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1149


>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
 gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Canis lupus familiaris]
 gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Ailuropoda melanoleuca]
 gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Felis catus]
 gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
 gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
 gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
          Length = 1174

 Score = 1237 bits (3200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 685/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 822  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
          Length = 1174

 Score = 1236 bits (3199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/832 (70%), Positives = 682/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 346  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 405

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 406  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 465

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 466  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 525

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 526  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 585

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 586  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKRHIDMLKER 645

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 646  EY-NNFGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCMTYTHCEIHPA 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKR 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 822  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  GTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1062 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1122 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1173


>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
          Length = 1175

 Score = 1236 bits (3199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 685/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 408  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 648  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 823  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1063 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1123 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1174


>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
          Length = 1150

 Score = 1236 bits (3199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 685/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 322  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 381

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ LT++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 382  LFKNLTKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 441

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 442  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 501

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 502  ALMAYISVGSQPAPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 561

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR +  L++R
Sbjct: 562  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHVDMLKER 621

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA+G +EYIDT EEET MI+M+ +DL Q +   E AY +TYTHCEIHP+
Sbjct: 622  EY-NNYGWQVLVAQGVVEYIDTLEEETVMIAMSTDDLKQDK---EFAYCNTYTHCEIHPA 677

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 678  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 737

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 738  RSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKR 797

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 798  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELE 857

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 858  GSTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 917

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 918  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 977

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 978  FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1037

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1038 RARGPLQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1097

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1098 CGLIAIANLRSNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1149


>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
          Length = 1174

 Score = 1236 bits (3199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 685/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E  +  GW DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 647  EY-KTTGWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 822  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGKEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
          Length = 1175

 Score = 1236 bits (3199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 684/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDNLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LV+ G +EYIDT EEETTMI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DY-NNYGWQVLVSSGVVEYIDTLEEETTMIAMSPDDLRQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIACY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 823  VGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTMTLPDNEDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGI+PDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFIGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
          Length = 1175

 Score = 1236 bits (3198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 683/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKRHIEMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCSTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F+RSY+D+E K 
Sbjct: 763  RSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKDQESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  VGDQEEQFEKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRFTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISSLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Equus caballus]
          Length = 1174

 Score = 1236 bits (3198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NLQ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLQLAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 822  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
          Length = 1167

 Score = 1236 bits (3198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 685/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 340  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 399

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 400  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 459

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 460  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 519

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 520  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 579

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 580  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 639

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 640  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 694

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 695  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 754

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 755  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 814

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 815  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 875  GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 935  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 994

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 995  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1054

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1055 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1114

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1115 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166


>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
            [Canis lupus familiaris]
 gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Felis catus]
          Length = 1099

 Score = 1236 bits (3198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 685/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 272  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 331

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 332  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 391

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 392  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 451

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 452  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 511

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 512  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 571

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 572  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 626

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 627  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 686

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 687  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 746

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 747  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 806

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 807  GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 866

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 867  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 926

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 927  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 986

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 987  RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1046

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1047 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1098


>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
          Length = 1168

 Score = 1236 bits (3197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 685/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 341  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 400

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 401  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 460

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 461  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 520

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 521  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 580

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 581  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 640

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 641  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 695

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 696  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 755

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 756  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 815

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 816  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 875

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 876  GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 935

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 936  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 995

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 996  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1055

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1056 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1115

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1116 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1167


>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
          Length = 1176

 Score = 1236 bits (3197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 684/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK + IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLLKEVRMYAQKFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMST 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  +L +KKR I  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGKLSLKKRHIEMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW DLVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 648  EY-NNYGWQDLVASGVVEYIDTLEEETVMIAMSPEDLRQDK---EYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VL+YPQKPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIACY+GYNQEDSVIMN S+++RGFFRS+F+R+Y+D+E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAIACYTGYNQEDSVIMNTSAVERGFFRSVFYRAYKDQECKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R +  GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   PI+ DE +
Sbjct: 824  SGDQEEQFEKPTRESCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPITDDELE 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+++RD S  LR+SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  GTTKRFSKRDASTFLRNSETGIVDQVMVTLNNEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNG TGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDTVNVQKISNLLQEYGYQLRGNEVMYNGQTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YRVHVC  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRVHVCNL 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1175


>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
          Length = 1150

 Score = 1235 bits (3196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/832 (70%), Positives = 679/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 322  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 381

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 382  LFKTLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 441

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 442  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 501

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 502  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMTT 561

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+KKR I  L+ R
Sbjct: 562  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRHIDMLKDR 621

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M   D+   +   E AY  TYTHCEIHP+
Sbjct: 622  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMMTEDMKHEK---EYAYCTTYTHCEIHPA 677

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYP KPLVTT
Sbjct: 678  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTT 737

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 738  RSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKR 797

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 798  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNEDELE 857

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 858  GTTKRFTKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQ 917

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 918  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 977

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 978  FNDAVNVQKISALLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1037

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1038 RARGPVQILVRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1097

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1098 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1149


>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
          Length = 1150

 Score = 1235 bits (3196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 687/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 322  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRA 381

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 382  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHMARAGV 441

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 442  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAAVGLVKNL 501

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 502  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 561

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+KKR+I  L++R
Sbjct: 562  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRNIDQLKER 621

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 622  DY-NNYGWQMLVASGVVEYIDTLEEETVMIAMSPDDLNQDK---EYAYCTTYTHCEIHPA 677

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 678  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 737

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N ++++RGFFRS+F+RSY+D E K 
Sbjct: 738  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDAESKR 797

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+RSN  GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 798  IGDQEEQFEKPNRSNCQGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDELE 857

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 858  GTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 917

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 918  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 977

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 978  FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1037

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1038 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1097

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M+IAPR++ 
Sbjct: 1098 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMSIAPRLMV 1149


>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B [Oryctolagus
            cuniculus]
          Length = 1174

 Score = 1235 bits (3196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 822  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
          Length = 1175

 Score = 1235 bits (3195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/832 (70%), Positives = 682/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDKGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHMARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGSLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MISM+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMISMSPDDLRQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
          Length = 1176

 Score = 1235 bits (3195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 683/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLKYSLATGNWGDQKKAHLARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IV+  RLL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVDNGRLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIACY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  ICDQEEQFEKPTRTTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPLQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIAN++ ++FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANMRNSTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
 gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
 gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Pan
            troglodytes]
 gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
            jacchus]
 gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
            [Pongo abelii]
 gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
            leucogenys]
 gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
            porcellus]
 gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Cricetulus griseus]
 gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Otolemur garnettii]
 gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Papio anubis]
 gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
 gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
            largest subunit [human, HeLa cells, Peptide, 1174 aa]
 gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted) [Rattus
            norvegicus]
 gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
 gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
 gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
 gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
          Length = 1174

 Score = 1235 bits (3195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 822  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Pongo abelii]
 gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1167

 Score = 1234 bits (3194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 340  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 399

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 400  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 459

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 460  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 519

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 520  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 579

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 580  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 639

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 640  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 694

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 695  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 754

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 755  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 814

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 815  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 875  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 935  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 994

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 995  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1054

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1055 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1114

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1115 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166


>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
          Length = 1173

 Score = 1234 bits (3194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 683/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 345  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 404

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 405  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 464

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 465  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 524

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 525  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 584

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 585  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDRLKER 644

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +  ++ GW  LVA+G +EYIDT EEET MI+M+++DL   R     AY  T+THCEIHP+
Sbjct: 645  DY-DNYGWQMLVAEGVVEYIDTLEEETVMIAMSLDDL---RHDKSYAYCSTHTHCEIHPA 700

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 701  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 760

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 761  RSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKR 820

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 821  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELE 880

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 881  GTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 940

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 941  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1000

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1001 FNDAVNVQKISSLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1060

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1061 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1120

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1121 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1172


>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Loxodonta africana]
          Length = 1010

 Score = 1234 bits (3193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 685/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 183  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 242

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 243  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 302

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 303  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 362

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 363  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 422

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 423  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 482

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 483  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 537

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 538  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 597

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 598  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 657

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 658  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 717

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 718  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 777

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 778  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 837

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 838  FNDAVNVQKISNLLSEYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 897

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 898  RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 957

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 958  CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1009


>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
          Length = 1150

 Score = 1234 bits (3193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 683/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 322  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 381

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 382  LFKNLMKEVRIYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 441

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 442  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 501

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 502  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 561

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 562  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGNLLLKKRHIDMLKER 621

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 622  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPA 677

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 678  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 737

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RGFFRS+FFR+Y+D E K 
Sbjct: 738  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRAYKDAESKR 797

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 798  IGDQEEQFEKPTRTTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDTEDELE 857

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 858  GTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 917

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 918  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 977

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 978  FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1037

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1038 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1097

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1098 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1149


>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
          Length = 1167

 Score = 1234 bits (3193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 340  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 399

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 400  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 459

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 460  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 519

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 520  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 579

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 580  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 639

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 640  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 694

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 695  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 754

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 755  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 814

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 815  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 875  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 935  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 994

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 995  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1054

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1055 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1114

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1115 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166


>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
          Length = 1175

 Score = 1234 bits (3193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 682/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKTLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHMARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHNS WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK+ I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGSLLLKKKHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTIMLPETEDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
            [Pongo abelii]
 gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Otolemur garnettii]
 gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1099

 Score = 1234 bits (3193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 272  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 331

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 332  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 391

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 392  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 451

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 452  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 511

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 512  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 571

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 572  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 626

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 627  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 686

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 687  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 746

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 747  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 806

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 807  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 866

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 867  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 926

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 927  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 986

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 987  RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1046

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1047 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1098


>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Papio anubis]
          Length = 1083

 Score = 1234 bits (3193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 256  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 315

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 316  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 375

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 376  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 435

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 436  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 495

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 496  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 555

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 556  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 610

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 611  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 670

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 671  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 730

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 731  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 790

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 791  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 850

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 851  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 910

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 911  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 970

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 971  RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1030

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1031 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1082


>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
          Length = 1175

 Score = 1234 bits (3193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 683/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKRHIEMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F+RSY+D+E K 
Sbjct: 763  RSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKDQESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  VGDQEEQFEKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRFTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E M+NGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISSLLQEYGYQLRGNEVMFNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
          Length = 1174

 Score = 1234 bits (3192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/832 (70%), Positives = 679/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 346  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 405

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 406  LFKNLMKEVRMYAQKFIDKGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGV 465

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 466  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 525

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 526  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 585

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 586  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKRHIDMLKER 645

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 646  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPA 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKR 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 822  LGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDELD 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  GTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1062 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1122 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1173


>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
            adamanteus]
          Length = 1167

 Score = 1234 bits (3192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 340  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 399

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 400  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 459

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 460  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 519

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 520  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 579

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 580  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 639

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 640  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 694

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 695  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 754

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 755  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 814

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 815  GYDQEEVFEKPSRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 875  STNRRYTKRDCSTFLRTSETGIVDQVMITLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 935  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 994

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 995  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1054

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1055 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1114

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGL+AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRML+
Sbjct: 1115 CGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMLS 1166


>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
            rotundus]
          Length = 1144

 Score = 1234 bits (3192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 317  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 376

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 377  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 436

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 437  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 496

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 497  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 556

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 557  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 616

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 617  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 671

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 672  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 731

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 732  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 791

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 792  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 851

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 852  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 911

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 912  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 971

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 972  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1031

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1032 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1091

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1092 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1143


>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
          Length = 1176

 Score = 1233 bits (3191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR+++A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKISAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
          Length = 1167

 Score = 1233 bits (3191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 683/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 340  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 399

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AI  K I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 400  MFKNLLKEVRIYAQKFIDRGKDFNLELAINTKIISDGLKYSLATGNWGDQKKAHQARAGV 459

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 460  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 519

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 520  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 579

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 580  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 639

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 640  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 694

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 695  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 754

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 755  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 814

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 815  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 875  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 935  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 994

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 995  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1054

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1055 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1114

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1115 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166


>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like,
           partial [Takifugu rubripes]
          Length = 982

 Score = 1233 bits (3191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 155 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 214

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGV 119
           +F+ L +++R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG    A   RAGV
Sbjct: 215 MFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGV 274

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 275 SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 334

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 335 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 394

Query: 240 LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
           LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++R
Sbjct: 395 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKER 454

Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
           E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 455 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 509

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 510 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 569

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 570 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 629

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
           G   +E F +P R    GMRH  Y+KLDDDGL  PG RVSGEDVIIGKT   P ++DE +
Sbjct: 630 GFDQEEIFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGEDVIIGKTVTLPDNEDELE 689

Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
               RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 690 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 749

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATP
Sbjct: 750 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATP 809

Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           F D V V  +S  L + GY +RG E +YNG TGR+LT+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 810 FNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHS 869

Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
           R RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FLKERLF+ SD Y+VHVC  
Sbjct: 870 RARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNL 929

Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
           CGL+AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 930 CGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 981


>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
 gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1174

 Score = 1233 bits (3191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  Y+KLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 822  GFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
          Length = 1175

 Score = 1233 bits (3190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 679/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L+ R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKSHVDMLKDR 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+  DL Q +   E AY +TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQDK---ENAYCNTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNAHYDKLDDDGIISPGIRVSGDDVVIGKTIMLPENEDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANLK N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGLIAIANLKNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1167

 Score = 1233 bits (3189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 340  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 399

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 400  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 459

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 460  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 519

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 520  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 579

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 580  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 639

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 640  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 694

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 695  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 754

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 755  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 814

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  Y+KLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 815  GFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 875  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 935  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 994

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 995  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1054

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1055 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1114

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1115 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166


>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
            domestica]
 gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
            harrisii]
          Length = 1174

 Score = 1233 bits (3189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 822  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
          Length = 1083

 Score = 1232 bits (3188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 683/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 256  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 315

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 316  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 375

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 376  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 435

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 436  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 495

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 496  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 555

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 556  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 610

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 611  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 670

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 671  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 730

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVII KT   P ++DE +
Sbjct: 731  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIISKTVTLPENEDELE 790

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 791  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 850

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 851  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 910

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 911  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 970

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 971  RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1030

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1031 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1082


>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
          Length = 1174

 Score = 1232 bits (3188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/832 (70%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 346  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 405

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 406  LFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 465

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 466  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 525

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 526  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 585

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 586  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDMLKER 645

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 646  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPA 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDSESKR 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE  
Sbjct: 822  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGLRVSGDDVVIGKTITLPENEDELD 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  GTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1062 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1122 CGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1173


>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
          Length = 1099

 Score = 1232 bits (3187), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 683/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 272  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 331

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 332  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 391

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 392  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 451

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 452  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 511

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 512  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 571

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 572  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 626

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 627  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 686

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DR FFRS+F+RSY+++E K 
Sbjct: 687  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRSFFRSVFYRSYKEQESKK 746

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 747  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 806

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 807  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 866

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 867  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 926

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 927  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 986

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 987  RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1046

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1047 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1098


>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
            carolinensis]
          Length = 1174

 Score = 1231 bits (3186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGI----AYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 822  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K++VRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIKVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGL+AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
          Length = 1175

 Score = 1231 bits (3186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/831 (70%), Positives = 682/831 (82%), Gaps = 9/831 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAISDATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK+ I  L+++
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGHLLLKKKHIDMLKEK 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA+G +EYIDT EEET MI+MT +DL Q +   E AY   YTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVAQGVVEYIDTLEEETVMIAMTPDDLRQDK---EYAYCTNYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKG 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  MGDQEEQFEKPSRTTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YRVHVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRVHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            CG+IAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELM+M IAPR++
Sbjct: 1123 CGIIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLM 1173


>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
            guttata]
          Length = 1174

 Score = 1231 bits (3186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 822  GYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
          Length = 1176

 Score = 1231 bits (3185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/832 (69%), Positives = 683/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD N++ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNMELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE Q LL+K+  +  L+QR
Sbjct: 587  LRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENQTLLLKRSHVDNLKQR 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W +LV+ G +EYIDT EEETTMI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DY-NNYKWQELVSSGVVEYIDTLEEETTMIAMSPEDLRQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+RS   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  IGDQEEQFEKPNRSTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RY++RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRYSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+ PDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGH+GR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC +
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNY 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
            magnipapillata]
          Length = 1184

 Score = 1231 bits (3185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVGT DFCETKKAY+ GY++HR+LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 352  MLPHVGTSDFCETKKAYFLGYMVHRILLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 411

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD  ++ AIK KTIT GL+YSLATGNWG Q  A   RAGV
Sbjct: 412  LFKNLMKEVRLYAQKFIDKGKDFKIELAIKTKTITDGLRYSLATGNWGDQKKAHQARAGV 471

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEGQA GLVKNL
Sbjct: 472  SQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTHWGMICPAETPEGQAVGLVKNL 531

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISP+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 532  ALMAYISVGSQPSPILEFLEEWAMENLEEISPSAIKDATKIFVNGCWVGIHRDPEQLILT 591

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LRRLRR++D+  +EV +VRDIR KE+RIYTD GR  RPL IVE Q+LL+KK  +  L++R
Sbjct: 592  LRRLRRQMDIIVSEVSMVRDIRDKEIRIYTDAGRVCRPLLIVENQKLLLKKSHVDQLKER 651

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW DLV+KG +EYID  EEET MI+M++ DL +     E  Y+ TYTH EIHPS
Sbjct: 652  EM-NNFGWQDLVSKGVVEYIDVNEEETAMIAMSLEDLEER----EHKYSSTYTHSEIHPS 706

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 707  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 766

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+M+ L FR+LPAGIN+IVAIA Y+GYNQEDSV++N S+I+RG +RS+F+RSYRDEE + 
Sbjct: 767  RSMDFLKFRELPAGINSIVAIASYTGYNQEDSVLLNASAINRGLYRSVFYRSYRDEESRK 826

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P+R  T GMR   YDKLDDDGL PPG+RVSG+DVIIGKT   P  +DE  
Sbjct: 827  GLDQEEKFEKPNRDETTGMRAAIYDKLDDDGLIPPGSRVSGDDVIIGKTVTLPDDEDETD 886

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
             QA  + +RD S  LR SETG+VDQV+LT N +G +F K++VRSVRIPQIGDKF+SRHGQ
Sbjct: 887  SQAKHFKKRDASTFLRASETGIVDQVMLTINEEGYKFCKIKVRSVRIPQIGDKFASRHGQ 946

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+TY QEDMP+T EGI+PDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 947  KGTCGITYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1006

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  +S  L + GY +RG E +YNG TGR+L A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1007 FNDAVNVQLVSSLLQEYGYHLRGNEVLYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHS 1066

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQILTRQP EGRSRDGGLRFGEMERDC IAHGA+ FL ERLF+ SDAYRVHVC  
Sbjct: 1067 RARGPVQILTRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLNERLFEASDAYRVHVCNL 1126

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FECR CKNKT + Q+ IPYACKLLFQELM+M+IAPRM+ 
Sbjct: 1127 CGLIAIANLRNNTFECRSCKNKTQVSQIRIPYACKLLFQELMSMSIAPRMMV 1178


>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan paniscus]
          Length = 1226

 Score = 1231 bits (3185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 399  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 458

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 459  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 518

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 519  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 578

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 579  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 638

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 639  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 698

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 699  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 753

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 754  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 813

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 814  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 873

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 874  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 933

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 934  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 993

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 994  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1053

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1054 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1113

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1114 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1173

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1174 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1225


>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
            vitripennis]
          Length = 1175

 Score = 1231 bits (3185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/830 (69%), Positives = 683/830 (82%), Gaps = 9/830 (1%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR L
Sbjct: 348  LPHVGVSDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 407

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
            F+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVS
Sbjct: 408  FKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVS 467

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRR+NSPIGR+GKLA+PRQLHN+ WGM+CPAETPEGQA GLVKNLA
Sbjct: 468  QVLNRLTFASTLSHLRRVNSPIGRDGKLARPRQLHNTLWGMLCPAETPEGQAVGLVKNLA 527

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TL
Sbjct: 528  LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATL 587

Query: 241  RRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            R+LRR++D+  +EV +VRDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R+
Sbjct: 588  RKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRISRPLLIVENQLLLLKKRHIEMLKERD 647

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
               DG W +LV++G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++
Sbjct: 648  YNNDG-WQELVSQGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPAM 703

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR
Sbjct: 704  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTR 763

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L FR+LPAGIN+IVAI CY+GYNQEDS+I+N S+++RGFFRS+F+RSY+D E K  
Sbjct: 764  SMEYLRFRELPAGINSIVAILCYTGYNQEDSIILNTSAVERGFFRSVFYRSYKDSETKRL 823

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 537
              V+E F +P+R    GMR+  YDKLD+DG+  PG RVSG+DVIIGKT   P + D+   
Sbjct: 824  GDVEEQFEKPNRQTCQGMRNAIYDKLDEDGIISPGIRVSGDDVIIGKTMTLPETDDDLDS 883

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
               R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQK
Sbjct: 884  STKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQK 943

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF
Sbjct: 944  GTCGIQYRQEDMPFTCEGMTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPF 1003

Query: 658  TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
             D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR
Sbjct: 1004 NDAVNVQKISTLLMEYGYQLRGNEIMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
             RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  C
Sbjct: 1064 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFC 1123

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            GLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++
Sbjct: 1124 GLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLM 1173


>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
          Length = 1150

 Score = 1231 bits (3184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/833 (69%), Positives = 682/833 (81%), Gaps = 9/833 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 322  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALSRRELDDRDHYGNKRLDLAGPLLAFLFRG 381

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 382  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 441

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 442  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 501

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 502  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAILDATKIFVNGCWVGIHRDPEQLMAT 561

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L+ R
Sbjct: 562  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENSNLLLKKRHIDMLKDR 621

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LV+ G +EYIDT EEET MI+M+  DL   +   E AY  TYTHCEIHP+
Sbjct: 622  DY-NNYGWQFLVSSGVVEYIDTLEEETVMIAMSPEDLHHDK---EYAYCTTYTHCEIHPA 677

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 678  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 737

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F+RSY+D+E K 
Sbjct: 738  RSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYKDQESKR 797

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+R+   GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE +
Sbjct: 798  IGDQEEQFEKPNRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLPENDDELE 857

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 858  GTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFSKIRVRSVRIPQIGDKFASRHGQ 917

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDI++NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 918  KGTCGIQYRQEDMPFTCEGLTPDIVINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 977

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 978  FNDAVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1037

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1038 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1097

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ +
Sbjct: 1098 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVE 1150


>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
          Length = 1171

 Score = 1231 bits (3184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/837 (67%), Positives = 684/837 (81%), Gaps = 20/837 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  D  ETKKAY+ GY++H+LL+C+LGR  EDDRDHYGNKRLDLAGPLLGGLFR+
Sbjct: 333  MLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRI 392

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LF+KLT+DV++++QKCVDNGKD NL  AI+++TIT+GL+YSLATGNWG   +A ++AGVS
Sbjct: 393  LFKKLTKDVKSFLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATGNWGMQKSA-SKAGVS 451

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYAS+LSHLRRLN+P+GREGK A+PRQLHN+ WGM+CPAETPEGQA GLVKNLA
Sbjct: 452  QVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLA 511

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS   PILEFLEEW TEN EEI P +IP +TKIFVNG WVG+HR+P  L++TL
Sbjct: 512  LMAYISVGSPQAPILEFLEEWATENLEEIKPQIIPHSTKIFVNGNWVGVHREPNELIRTL 571

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R LRR VD++ EV V+RD+  KELRIYTD GR  RPLFIVE  +LL++K  ++ LQ  + 
Sbjct: 572  RSLRRCVDIDAEVSVIRDLMNKELRIYTDAGRVCRPLFIVEDNQLLLQKEQVVKLQNHKI 631

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
              +  WH+L+  G +E IDTEEEE  MI+M   D+           +  +THCEIHPS+I
Sbjct: 632  -TNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGTG--------SQIHTHCEIHPSMI 682

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY +N++ RMDT+A VL YPQKPLVTTRA
Sbjct: 683  LGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYCSNFRARMDTMANVLNYPQKPLVTTRA 742

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            ME+LHFR+LP+GINAIV IA Y+GYNQEDS+IMNQS+IDRGFFRS F+R Y D+E+    
Sbjct: 743  MEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGFFRSTFYRCYIDQERNKSP 802

Query: 481  LVK----------EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
                         E+F +P R N +G+RHGSY KLD+DGL  PGTRVSG D+IIGKT+P+
Sbjct: 803  HGGPGGGAGGANCEEFEKPSRENCLGLRHGSYHKLDNDGLVAPGTRVSGNDIIIGKTSPL 862

Query: 531  SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
             Q E      R+ +RD S +LR  E G++D V+LTTNADG +F KVR R++R+PQIGDKF
Sbjct: 863  PQSEDSSLEQRHQKRDASTALRSHENGIIDSVMLTTNADGFKFTKVRFRNIRVPQIGDKF 922

Query: 591  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
            +SRHGQKGT+GMTY QEDMP+TVEGITPDI+VNPHAIPSRMT+G L+EC++GKV++  G 
Sbjct: 923  ASRHGQKGTIGMTYRQEDMPFTVEGITPDIVVNPHAIPSRMTVGHLVECLLGKVSSQTGD 982

Query: 651  EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
            EGDATPFTDVTV  I+  LH  GYQ  G E MY+GHTGRRLTA IF+GPT+YQRLKHMVD
Sbjct: 983  EGDATPFTDVTVQAIADTLHNLGYQKHGNEVMYSGHTGRRLTAQIFIGPTFYQRLKHMVD 1042

Query: 711  DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 770
            DKIHSR RGPV +LTRQP EGR+R+GGLR GEMERDC+I+HG+++FL +RLF  SDAYRV
Sbjct: 1043 DKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRV 1102

Query: 771  HVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            HVC+ CG+IAIANL+K +FECR C+NKT I QVHIPY+CKLLFQELMAM+IAPR+ T
Sbjct: 1103 HVCDICGIIAIANLRKMTFECRTCRNKTQISQVHIPYSCKLLFQELMAMSIAPRLFT 1159


>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
          Length = 1175

 Score = 1231 bits (3184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 682/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IV+   LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVDGGNLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  IGDQEEQFEKPTRLTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GATKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E M+NGHTGR+++A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEIMFNGHTGRKISAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG+IAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGIIAIANMRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
          Length = 1123

 Score = 1231 bits (3184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/832 (69%), Positives = 681/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 295  MLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRA 354

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 355  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 414

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 415  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 474

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ T
Sbjct: 475  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMAT 534

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R
Sbjct: 535  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKER 594

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   DG W +LV  G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 595  DYNNDG-WQELVGSGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPA 650

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 651  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 710

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY++ E K 
Sbjct: 711  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKEAESKK 770

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE  
Sbjct: 771  IGDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELD 830

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 831  STTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 890

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 891  KGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 950

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 951  FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1010

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1011 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1070

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++T
Sbjct: 1071 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMT 1122


>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
            niloticus]
          Length = 1174

 Score = 1231 bits (3184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 682/832 (81%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGV 119
            +F+ L +++R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG    A   RAGV
Sbjct: 407  MFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSGEDVIIGKT   P + DE  
Sbjct: 822  GFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELD 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  +S  L + GY +RG E +YNG TGR+LT+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGL+AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1122 CGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1173


>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
          Length = 1175

 Score = 1230 bits (3183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/832 (69%), Positives = 682/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK + IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR +  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGNLLLKKRHVDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNFGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 823  IGDQEEQFEKPTRATCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNEDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDM +T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMAFTAEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
          Length = 1179

 Score = 1230 bits (3183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 682/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 351  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 410

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK + IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 411  LFKNLLKEVRIYSQKFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGV 470

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 471  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 530

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 531  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMST 590

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  RL +KKR I  L++R
Sbjct: 591  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGRLALKKRHIEMLKER 650

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW DLVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 651  EY-NNYGWQDLVASGVVEYIDTLEEETVMIAMSPEDLRQDK---EYAYCTTYTHCEIHPA 706

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VL+YPQKPLVTT
Sbjct: 707  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTT 766

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F+RSY+D+E K 
Sbjct: 767  RSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKDQECKR 826

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P +    GMR+  YDKLD+DG+  PG RVSG+DVIIGKT   P + DE +
Sbjct: 827  SGDQEEQFEKPTKETCQGMRNAIYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELE 886

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV++T NA+G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 887  GTTRRFTKRDASTFLRNSETGIVDQVMVTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQ 946

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDM +T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 947  KGTCGIQYRQEDMIFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1006

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNG +GR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1007 FNDTVNVQKISNLLQEYGYQLRGNEVMYNGQSGRKINAQIFLGPTYYQRLKHMVDDKIHS 1066

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1067 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNL 1126

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPRM+ 
Sbjct: 1127 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRMMV 1178


>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
 gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
          Length = 1174

 Score = 1230 bits (3183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 822  GYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
 gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
          Length = 1202

 Score = 1230 bits (3183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/837 (67%), Positives = 684/837 (81%), Gaps = 20/837 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  D  ETKKAY+ GY++H+LL+C+LGR  EDDRDHYGNKRLDLAGPLLGGLFR+
Sbjct: 364  MLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRI 423

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LF+KLT+DV++++QKCVDNGKD NL  AI+++TIT+GL+YSLATGNWG   +A ++AGVS
Sbjct: 424  LFKKLTKDVKSFLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATGNWGMQKSA-SKAGVS 482

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYAS+LSHLRRLN+P+GREGK A+PRQLHN+ WGM+CPAETPEGQA GLVKNLA
Sbjct: 483  QVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLA 542

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS   PILEFLEEW TEN EEI P +IP +TKIFVNG WVG+HR+P  L++TL
Sbjct: 543  LMAYISVGSPQAPILEFLEEWATENLEEIKPQIIPHSTKIFVNGNWVGVHREPNELIRTL 602

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R LRR VD++ EV V+RD+  KELRIYTD GR  RPLFIVE  +LL++K  ++ LQ  + 
Sbjct: 603  RSLRRCVDIDAEVSVIRDLMNKELRIYTDAGRVCRPLFIVEDNQLLLQKEQVVKLQNHKI 662

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
              +  WH+L+  G +E IDTEEEE  MI+M   D+           +  +THCEIHPS+I
Sbjct: 663  -TNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGTG--------SQIHTHCEIHPSMI 713

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY +N++ RMDT+A VL YPQKPLVTTRA
Sbjct: 714  LGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYCSNFRARMDTMANVLNYPQKPLVTTRA 773

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
            ME+LHFR+LP+GINAIV IA Y+GYNQEDS+IMNQS+IDRGFFRS F+R Y D+E+    
Sbjct: 774  MEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGFFRSTFYRCYIDQERNKSP 833

Query: 481  LVK----------EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
                         E+F +P R N +G+RHGSY KLD+DGL  PGTRVSG D+IIGKT+P+
Sbjct: 834  HGGPGGGAGGANCEEFEKPSRENCLGLRHGSYHKLDNDGLVAPGTRVSGNDIIIGKTSPL 893

Query: 531  SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
             Q E      R+ +RD S +LR  E G++D V+LTTNADG +F KVR R++R+PQIGDKF
Sbjct: 894  PQSEDSSLEQRHQKRDASTALRSHENGIIDSVMLTTNADGFKFTKVRFRNIRVPQIGDKF 953

Query: 591  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
            +SRHGQKGT+GMTY QEDMP+TVEGITPDI+VNPHAIPSRMT+G L+EC++GKV++  G 
Sbjct: 954  ASRHGQKGTIGMTYRQEDMPFTVEGITPDIVVNPHAIPSRMTVGHLVECLLGKVSSQTGD 1013

Query: 651  EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
            EGDATPFTDVTV  I+  LH  GYQ  G E MY+GHTGRRLTA IF+GPT+YQRLKHMVD
Sbjct: 1014 EGDATPFTDVTVQAIADTLHNLGYQKHGNEVMYSGHTGRRLTAQIFIGPTFYQRLKHMVD 1073

Query: 711  DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 770
            DKIHSR RGPV +LTRQP EGR+R+GGLR GEMERDC+I+HG+++FL +RLF  SDAYRV
Sbjct: 1074 DKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRV 1133

Query: 771  HVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            HVC+ CG+IAIANL+K +FECR C+NKT I QVHIPY+CKLLFQELMAM+IAPR+ T
Sbjct: 1134 HVCDICGIIAIANLRKMTFECRTCRNKTQISQVHIPYSCKLLFQELMAMSIAPRLFT 1190


>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
          Length = 1176

 Score = 1230 bits (3182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/832 (69%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLLKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK+ I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGALLLKKKHIDHLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW +LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DY-NNYGWQNLVASGVVEYIDTLEEETVMIAMSPDDLAQVK---EYAYCSTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  LGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTRRYTKRDASTFLRNSETGIVDQVMVTLNREGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIECI GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
          Length = 1176

 Score = 1230 bits (3182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/832 (69%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLLKEVRMYAQKFIDKGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK+ I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKKHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW +LVA G +EYIDT EEET MI+M  +DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DY-NNYGWQNLVASGVVEYIDTLEEETVMIAMNPDDLQQIK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VL+YP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIECI GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris striicornis]
          Length = 1175

 Score = 1230 bits (3182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 683/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRHIENLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LV+ G +EYIDT EEETTMI+++  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DY-NNYGWQVLVSSGVVEYIDTLEEETTMIAISPEDLRQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIACY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  VGDQEEQFEKPMRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   ++T+RD S  LR+SETG+VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKKFTKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG++PDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLSPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNL 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
          Length = 1175

 Score = 1230 bits (3182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/832 (69%), Positives = 679/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   DG W +LV  G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DYNNDG-WQELVGSGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETDDELD 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  STTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba livia]
          Length = 1168

 Score = 1230 bits (3182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 341  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 400

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 401  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 460

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 461  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 520

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 521  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 580

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 581  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 640

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 641  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 695

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 696  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 755

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 756  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 815

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 816  GYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 875

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 876  STNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 935

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 936  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 995

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 996  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1055

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1056 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1115

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1116 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1167


>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
          Length = 1173

 Score = 1229 bits (3181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/832 (69%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 345  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 404

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 405  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 464

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 465  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 524

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 525  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 584

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR +D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L+ R
Sbjct: 585  LRKLRREMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDMLKDR 644

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LV+ G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 645  EY-NNYGWQVLVSSGLVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPA 700

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 701  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 760

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K 
Sbjct: 761  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKR 820

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQ 536
                +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT  +  + DE +
Sbjct: 821  IGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTMTLHETDDELE 880

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 881  GTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 940

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 941  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1000

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1001 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1060

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1061 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1120

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++ 
Sbjct: 1121 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMV 1172


>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
          Length = 1175

 Score = 1229 bits (3180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/832 (69%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR SRPL IVE   LL+KK  I  L+ R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLIIVENGSLLLKKSHIDMLKDR 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LV  G +EYIDT EEETTMI+++ +DL  ++   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQGLVGSGVVEYIDTLEEETTMIAISPDDLRNSK---EYAYCSTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMRH  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 823  IGEQEEQFEKPTRQTCSGMRHALYDKLDDDGIISPGVRVSGDDVVIGKTMTLPENEDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +F GPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFFGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP+EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPLQILVRQPSEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Megachile rotundata]
          Length = 1175

 Score = 1229 bits (3180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/832 (69%), Positives = 679/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   DG W +LV  G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DYNNDG-WQELVGSGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDELD 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  STTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
          Length = 1179

 Score = 1229 bits (3179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/833 (69%), Positives = 681/833 (81%), Gaps = 9/833 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 351  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALSRRELDDRDHYGNKRLDLAGPLLAFLFRG 410

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 411  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 470

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 471  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 530

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 531  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAILDATKIFVNGCWVGIHRDPEQLMST 590

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  I  L+ R
Sbjct: 591  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKVHIDMLKDR 650

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LV+ G +EYIDT EEET MI+M+ +DL   +   E AY  TYTHCEIHP+
Sbjct: 651  DY-NNYGWQFLVSSGVVEYIDTLEEETVMIAMSPDDLNHEK---EYAYCTTYTHCEIHPA 706

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 707  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 766

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F+RSY+D+E K 
Sbjct: 767  RSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYKDQESKK 826

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+R+   GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE +
Sbjct: 827  IGDQEEQFEKPNRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLPENDDELE 886

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   +Y +RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 887  GSTKKYVKRDASTFLRNSETGIVDQVMITLNSEGYKFSKIRVRSVRIPQIGDKFASRHGQ 946

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 947  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1006

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1007 FNDAVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1066

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1067 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1126

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ +
Sbjct: 1127 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVE 1179


>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
          Length = 1150

 Score = 1229 bits (3179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/832 (69%), Positives = 684/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 322  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRA 381

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 382  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHLARAGV 441

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 442  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAAVGLVKNL 501

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 502  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 561

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+KKR+I  L++R
Sbjct: 562  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRNIDQLKER 621

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 622  DY-NNYGWQMLVASGVVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPA 677

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYP KPLVTT
Sbjct: 678  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTT 737

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N ++++RGFFRS+F+RSY+D E K 
Sbjct: 738  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDAESKR 797

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+R+N  GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + D+  
Sbjct: 798  IGDQEEQFEKPNRNNCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDLD 857

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 858  GTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 917

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 918  KGTCGVQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 977

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS+ L   GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 978  FNDAVNVQKISQLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1037

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1038 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1097

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1098 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1149


>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Apis florea]
          Length = 1175

 Score = 1228 bits (3178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/832 (69%), Positives = 679/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   DG W +LV  G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DYNNDG-WQELVGSGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDELD 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  STTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
          Length = 1178

 Score = 1228 bits (3178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/831 (69%), Positives = 680/831 (81%), Gaps = 9/831 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 350  MLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 409

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 410  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 469

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 470  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 529

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ T
Sbjct: 530  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMAT 589

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R
Sbjct: 590  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKER 649

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   DG W +LV  G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 650  DYNNDG-WQELVGSGVVEYIDTLEEETVMIAMSPDDLKQDK---EYAYCTTYTHCEIHPA 705

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 706  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 765

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY++ E K 
Sbjct: 766  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKEAESKK 825

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE  
Sbjct: 826  IGDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELD 885

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 886  STTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 945

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 946  KGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1005

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1006 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1065

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1066 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1125

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            CGLIAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++
Sbjct: 1126 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLM 1176


>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            terrestris]
 gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            impatiens]
          Length = 1175

 Score = 1228 bits (3178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/832 (69%), Positives = 679/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQTLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   DG W +LV  G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DYNNDG-WQELVGSGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDELD 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  STTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
          Length = 1172

 Score = 1228 bits (3178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/832 (69%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 344  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 403

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 404  LFKNLMKEVRMYAQKFIDKGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 463

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 464  SQVLNRLTFASTLSHLRRINSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 523

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 524  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMST 583

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE + LL+KKR +  L++R
Sbjct: 584  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENRNLLLKKRHVDMLKER 643

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 644  DY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPA 699

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYP KPLVTT
Sbjct: 700  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPMKPLVTT 759

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 760  RSMEYLRFRELPAGINTIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKR 819

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R +  GMR+  YDKLD+DG+  PG RVSG+DVIIGKT   P + DE +
Sbjct: 820  LGDQEEQFEKPTRQSCQGMRNALYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELE 879

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 880  GTTKRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 939

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GK+ A+ G+ GDATP
Sbjct: 940  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGANKGEIGDATP 999

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1000 FNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1059

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1060 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1119

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1120 CGLIAIANLRSNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1171


>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
          Length = 1174

 Score = 1228 bits (3177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 682/832 (81%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  VLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGV 119
            +F+ L +++R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG    A   RAGV
Sbjct: 407  MFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSGEDVIIGKT   P + DE  
Sbjct: 822  GFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELD 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  +S  L + GY +RG E +YNG TGR+LT+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FLKERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGL+AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1122 CGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1173


>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
          Length = 1175

 Score = 1228 bits (3177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHLARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR +  L+++
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGTLLLKKRHVDMLKEK 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+  DL   R+  E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDL---RVDKEYAYCQTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y +HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYAIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M+IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMSIAPRLMV 1174


>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
          Length = 1174

 Score = 1228 bits (3177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/832 (69%), Positives = 678/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 346  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 405

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 406  LFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKIITDGLRYSLATGNWGDQKKAHMARAGV 465

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 466  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 525

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 526  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 585

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  I  L++R
Sbjct: 586  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKHHIDMLKER 645

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 646  EH-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPA 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RG FRS+F+RSY+D E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGLFRSVFYRSYKDSESKR 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE  
Sbjct: 822  NGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGLRVSGDDVVIGKTITLPENEDELD 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  GTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1062 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1122 CGLIAIANMRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMSMNIAPRLMV 1173


>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
 gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
          Length = 1175

 Score = 1228 bits (3177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 679/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKLITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIANATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIACY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTMTLPENDDELD 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDM +T EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMIFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDQYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
 gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
          Length = 1182

 Score = 1228 bits (3177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/837 (69%), Positives = 683/837 (81%), Gaps = 10/837 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 351  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 410

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR L ++VR Y QK +D GKD N++ A+K K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 411  LFRNLMKEVRMYAQKFIDRGKDFNIELALKPKVITDGLRYSLATGNWGDQKKAHQARAGV 470

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 471  SQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNTHWGMICPAETPEGHAVGLVKNL 530

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEF+EEW  EN EEI+P+ I  +TKIFVNGCWVGIHRDP+ L+ T
Sbjct: 531  ALMAYISVGSQPSPILEFMEEWTMENLEEITPSAINTSTKIFVNGCWVGIHRDPDQLMST 590

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRRR+D+  +EV +VRD R +E+RIY+D GR  RPL IVE Q+LL+KK  I  L++R
Sbjct: 591  LRKLRRRMDIIVSEVSMVRDFREREIRIYSDAGRICRPLLIVENQKLLLKKNHIDQLKER 650

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E  E   W +LVA G +EYID  EEET M++MT ++LV+      +AY  TYTHCEIHPS
Sbjct: 651  EYNE-YSWQELVANGIVEYIDVNEEETVMVAMTPDELVEK----GQAYCSTYTHCEIHPS 705

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYPQKPLVTT
Sbjct: 706  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTT 765

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGINAIVAIA Y+GYNQEDSVIMN S+IDRG +RS+F+RSYRD+E K 
Sbjct: 766  RSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLYRSVFYRSYRDQESKK 825

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMR+ SYDKLD+DGL  PG RVSG+DVI+GKT   P + DE +
Sbjct: 826  GLDQEETFEKPTRDAVQGMRNASYDKLDEDGLIAPGIRVSGDDVIVGKTVTLPDNDDELE 885

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G A +Y+++D S  LR SETG+VDQV++T N +G +F K++VRSVR+PQIGDKF+SRHGQ
Sbjct: 886  GTARKYSKKDASTFLRPSETGIVDQVMVTINQEGFKFTKIKVRSVRVPQIGDKFASRHGQ 945

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+TY QEDMP+T EG++PD+I+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 946  KGTCGITYRQEDMPFTCEGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1005

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS+ L+  GY +RG E +Y+G TGR+L   +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1006 FNDAVNVQKISQLLNDYGYHLRGNEVLYSGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHS 1065

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QILTRQP EGRSRDGGLRFGEMERDCMIAHG++ FL ERLF+ SD Y  HVC  
Sbjct: 1066 RARGPLQILTRQPMEGRSRDGGLRFGEMERDCMIAHGSAQFLNERLFEVSDPYSCHVCNL 1125

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTK 832
            CGLIAIANL+ N+FECRGCKNKT + ++ +PYA KLLFQELM+M+IAPRM+  +  K
Sbjct: 1126 CGLIAIANLRNNTFECRGCKNKTQVSRIRMPYAAKLLFQELMSMSIAPRMMVCDPVK 1182


>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
 gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
          Length = 1174

 Score = 1227 bits (3175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/832 (69%), Positives = 682/832 (81%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  VLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGV 119
            +F+ L +++R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG    A   RAGV
Sbjct: 407  MFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TY+HCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYSHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSGEDVIIGKT   P + DE  
Sbjct: 822  GFDQEEIFEKPTRETCSGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPETDDELD 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  +S  L + GY +RG E +YNG TGR++T+ IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1062 RARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGL+AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1122 CGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1173


>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Metaseiulus occidentalis]
          Length = 1178

 Score = 1227 bits (3175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/832 (70%), Positives = 677/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAYY GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPL+  LFR 
Sbjct: 345  MLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRG 404

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ LT++VR + QK +D GKD NL+ AIK + IT GLKYSLATGNWG Q  A   R GV
Sbjct: 405  LFKNLTKEVRMFAQKFIDKGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARPGV 464

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTYASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 465  SQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNL 524

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I +ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 525  ALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRDPEQLMLT 584

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            L++LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+LL+K+  I  L++R
Sbjct: 585  LQKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKRHHIDKLKER 644

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E      W DLVA G +EYIDT EEET M++MT +DL Q +     AY  TYTHCEIHPS
Sbjct: 645  ECSY-YSWQDLVASGVVEYIDTLEEETVMLAMTPDDLTQDK---ALAYCSTYTHCEIHPS 700

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPL TT
Sbjct: 701  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLTTT 760

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGINAIVAI  Y+GYNQEDSVI+N S++DRGFFRS+F+RSY+D E K 
Sbjct: 761  RSMEYLRFRELPAGINAIVAIMSYTGYNQEDSVILNASAVDRGFFRSVFYRSYKDSENKR 820

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PGTRVSG+DVIIGKT   P + D+  
Sbjct: 821  MGDQEETFEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLD 880

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RY++RD S  LR+SETG+VDQV+LT N+DG +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 881  STNKRYSKRDASTFLRNSETGIVDQVMLTINSDGYKFCKIRVRSVRIPQIGDKFASRHGQ 940

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+TY QEDMP+TVEG+TPDII+NPHAIPSRMTIG LIEC+ GKVA++ G+ GDATP
Sbjct: 941  KGTCGVTYRQEDMPFTVEGLTPDIIINPHAIPSRMTIGHLIECLQGKVASNKGEIGDATP 1000

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1001 FNDAVNVQKISNILMEYGYHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHS 1060

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF  SD YR H+C  
Sbjct: 1061 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFFASDPYRTHICNI 1120

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N FEC+GC+NKT I Q+ +PYACKLLFQELM+M IAPRM+ 
Sbjct: 1121 CGLIAIANLRNNIFECKGCRNKTQISQITLPYACKLLFQELMSMNIAPRMMV 1172


>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
            queenslandica]
          Length = 1175

 Score = 1227 bits (3174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/832 (70%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG   FCET+KAY+ GY++HRLL  ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 345  LLPHVGVSSFCETRKAYFLGYMVHRLLQAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 404

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR LT++VR Y QK +D G+D NL+ AIK KTIT GL+YSLATGNWG Q  A  TRAGV
Sbjct: 405  LFRNLTKEVRLYAQKFIDKGRDFNLELAIKTKTITDGLRYSLATGNWGDQKKAHQTRAGV 464

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 465  SQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTHWGMICPAETPEGHAVGLVKNL 524

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+VI  +TKIFVNG WVGIHR+PE L+ T
Sbjct: 525  ALMGYISVGSQPAPILEFLEEWSMENLEEITPSVIANSTKIFVNGNWVGIHREPEHLMTT 584

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LRRLRR++D+  +EV +VRDIR +E+RI+TD GR  RPL IVE Q+LL+KK  I  L++R
Sbjct: 585  LRRLRRQMDIIVSEVSMVRDIREREIRIFTDAGRICRPLLIVENQKLLLKKHHIQMLKER 644

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYID  EEET MI+MT +DL         +Y  TYTHCEIHP+
Sbjct: 645  EY-NNASWQDLVAGGVVEYIDCLEEETVMIAMTPDDL---STEGGASYCSTYTHCEIHPA 700

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYPQKPLVTT
Sbjct: 701  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTT 760

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGINAIVAIA Y+GYNQEDSVIMN S+IDRG FRS+F+RSY+DEE K 
Sbjct: 761  RSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLFRSVFYRSYKDEESKR 820

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMR+ +YDKLD+DG+  PG RVSG D IIGKT   P + DE +
Sbjct: 821  GFDQEEVFEKPTRDTCAGMRNAAYDKLDEDGIIAPGLRVSGNDAIIGKTISLPENDDELE 880

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RY +RD S  LR SETG++DQV+L+ N DG +F K+RVRSVR+PQIGDKF+SRHGQ
Sbjct: 881  GAPKRYQKRDASTFLRASETGIIDQVMLSLNQDGYKFCKIRVRSVRVPQIGDKFASRHGQ 940

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+TY QEDMP+T EG++PD+I+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 941  KGTCGITYRQEDMPFTCEGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1000

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS+ L++  Y +RG E +YNGHTGR+L   +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1001 FNDAVNVQKISELLNEYNYHLRGNEVLYNGHTGRKLNTQVFLGPTYYQRLKHMVDDKIHS 1060

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQILTRQP EGRSRDGGLRFGEMERDC IAHGA+ FL ERL+  SDAY++H+C  
Sbjct: 1061 RARGPVQILTRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLHERLYTVSDAYKIHLCNL 1120

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ NSFECRGCKNKT I Q+ IPYACKLLFQELM+M+IAPR++T
Sbjct: 1121 CGLIAIANLQTNSFECRGCKNKTQISQIEIPYACKLLFQELMSMSIAPRIMT 1172


>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
            nigrotuberculatum]
          Length = 1177

 Score = 1226 bits (3172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/832 (69%), Positives = 684/832 (82%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKLITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIVDATKIFVNGCWVGIHRDPEQLMGT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+KKR I +L++R
Sbjct: 588  LRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRHIDSLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LV+ G +EYIDT EEETTMI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 648  DY-NNYGWQVLVSNGVVEYIDTLEEETTMIAMSPDDLRQEK---EYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDSESKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+R +  GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 824  IGDQEEVFEKPNRQSCQGMRNAIYDKLDDDGIISPGLRVSGDDVIIGKTMTLPDNEDELE 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   +Y++RD S  LR+SETG++DQVLLT N++G +F K+RVRS RIPQIGDKF+SRHGQ
Sbjct: 884  GTTKKYSKRDCSTFLRNSETGLIDQVLLTLNSEGYKFCKIRVRSERIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNG +GR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGFSGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
          Length = 1178

 Score = 1226 bits (3172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/832 (69%), Positives = 679/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 350  MLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 409

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 410  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 469

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 470  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 529

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ T
Sbjct: 530  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMAT 589

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV +VRDIR +E+RIYTD GR SRPL IVE Q LL++ R I  L++R
Sbjct: 590  LRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRISRPLLIVEGQNLLLQTRHINMLKER 649

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   DG W +LV  G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 650  DYNNDG-WQELVGSGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPA 705

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 706  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 765

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY++ E K 
Sbjct: 766  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKESESKK 825

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE  
Sbjct: 826  IGDQEEQFEKPSRLTCSGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELD 885

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 886  STTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 945

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 946  KGTCGIQYRQEDMPFSSEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1005

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1006 FNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1065

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1066 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1125

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++T
Sbjct: 1126 CGLIAIANLRNNTFECKGCKNKTQIAQIRLPYAAKLLFQELMAMNIAPRLMT 1177


>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
          Length = 1174

 Score = 1226 bits (3171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/832 (69%), Positives = 679/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 345  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 404

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 405  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 464

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 465  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 524

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 525  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 584

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IV+   LL+KKR I  L++R
Sbjct: 585  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVDNGILLLKKRHIDMLKER 644

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 645  DL-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPA 700

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 701  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 760

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 761  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 820

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 821  IGDQEEQFEKPTRTTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 880

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 881  GTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 940

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GKV+++ G+ GDATP
Sbjct: 941  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATP 1000

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1001 FNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1060

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1061 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1120

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1121 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1172


>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
          Length = 1175

 Score = 1226 bits (3171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/832 (69%), Positives = 678/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE Q LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGQNLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DY-TNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETDDELD 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  SATKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
          Length = 1175

 Score = 1224 bits (3168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/832 (69%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMTT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE + LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENRTLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LVA G +EYIDT EEET MI+M+ +DL Q R +   AY  TYTHCEIHP+
Sbjct: 647  DY-TNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQERAY---AYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+R    GMR+  YDKLD+DG+  PG RVSG+DVIIGKT   P + DE +
Sbjct: 823  MGDQEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+ PDII+NPHAIPSRMTIG LIECI GK+ A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLMPDIIINPHAIPSRMTIGHLIECIQGKLGANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRSNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
          Length = 1175

 Score = 1223 bits (3165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/832 (69%), Positives = 678/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRLYAQKFIDRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRINSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDSGRICRPLLIVENGKLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+  DL   R   E AY  T+THCEIH +
Sbjct: 647  EY-NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDL---RHEKEYAYCTTHTHCEIHAA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNAHYDKLDDDGIISPGIRVSGDDVVIGKTITLPENEDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
            [Saccoglossus kowalevskii]
          Length = 1175

 Score = 1222 bits (3162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/832 (70%), Positives = 686/832 (82%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRH 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK + IT GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRIYAQKFIDKGKDFNLELAIKTRIITDGLKYSLATGNWGEQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEGQA GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGQAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+ + I +ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAASAINEATKIFVNGCWVGIHRDPEQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            L++LRR++D+  +EV +VRDIR KE+RIYTD GR  RPL IVEKQ+LL+KK+ I  L++R
Sbjct: 587  LKKLRRQMDIIVSEVSMVRDIREKEIRIYTDAGRICRPLLIVEKQKLLLKKKHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +     Y  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGM----GYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN S+++RGFFRS+F+RSYRD+E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNLSAVERGFFRSVFYRSYRDQESKK 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +PDR +  GMR   YDKLDDDG+  PG+RVSG+DV+IGKT   P + DE +
Sbjct: 822  GLDQEEVFEKPDRESCQGMRMAVYDKLDDDGIIAPGSRVSGDDVLIGKTVTLPENDDELE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  +R +ETG+VDQV+++ N +G +F K+++RSVRIPQIGDKF+SRHGQ
Sbjct: 882  GTTRRFTKRDSSTFMRRTETGIVDQVMVSINQEGYKFCKIKIRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  LH+ GY +RG E +YNG TGR+L   IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDTVNVQKISNLLHEYGYHLRGNEVLYNGFTGRKLGTQIFIGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVHVC  
Sbjct: 1062 RARGPLQILNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FECRGCKNKT I Q+ +PYACKLLFQELM+M+IAPRM+ 
Sbjct: 1122 CGLIAIANLRNNTFECRGCKNKTQISQIRLPYACKLLFQELMSMSIAPRMMV 1173


>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
 gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
          Length = 1175

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/832 (69%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR + QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMFAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKN+
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNI 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+KK  +  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGQLLLKKNHVNMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  EY-NNFGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VL+YP KPLV T
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPHKPLVIT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE +
Sbjct: 823  IGDQEEQFEKPNRQTCQGMRNAMYDKLDDDGIIAPGVRVSGDDVIIGKTITLPDNDDELE 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GATKRYTKRDASTFLRNSETGCVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYQLRGNELMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
          Length = 1175

 Score = 1221 bits (3158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/832 (69%), Positives = 680/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKLITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMST 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+KKR I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRHIDMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA+G +EYIDT EEET MI+++ +DL Q +   + AY  TYTHCEIHP+
Sbjct: 647  EY-NNYGWQVLVAQGVVEYIDTLEEETVMIAISPDDLRQEK---DYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIACY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSECKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 823  IGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTMTLPENDDELD 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   ++++RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKKFSKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDM +T EGITPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMIFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
 gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
          Length = 1176

 Score = 1221 bits (3158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/832 (69%), Positives = 678/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLLKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL++K  +  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLRKNHVDMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LVA G +EYIDT EEET MI+MT  DL Q +   E AY  TYTHCEIHP+
Sbjct: 648  DY-NNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDK---EYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKK 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + D+  
Sbjct: 824  IGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDLD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RY++RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  GTTKRYSKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANMRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
 gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
          Length = 1175

 Score = 1220 bits (3157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/832 (69%), Positives = 676/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL++K  I  L+ R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLRKNHIDMLKDR 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LVA G +EYIDT EEET MI+MT  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DY-NNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+R    GMR+  YDKLD+DG+  PG RVSG+DV+IGKT   P + D+  
Sbjct: 823  IGDQEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGLRVSGDDVVIGKTITLPETDDDLD 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIECI GK+ ++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
          Length = 1174

 Score = 1220 bits (3157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/832 (69%), Positives = 680/832 (81%), Gaps = 10/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPL+  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRA 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK + IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKTLMKEVRMYAQKFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV +VRDI+ +E+RIYTD GR  RPL IVE  +LL+KKR +  L+QR
Sbjct: 587  LRKLRRQMDIIVSEVSMVRDIQDREIRIYTDAGRICRPLLIVENCKLLLKKRHVDMLKQR 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W +LVA G +EYIDT EEET MI+M+  DL Q +    +AY  TYTHCEIHP+
Sbjct: 647  EYI-NFSWQELVATGVVEYIDTLEEETAMIAMSPEDLRQGK----DAYCTTYTHCEIHPA 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VL YPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLQYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAI  Y+GYNQEDSVIMN S+++RGFFRS+FFRSY+D+E K 
Sbjct: 762  RSMEYLRFRELPAGINSVVAILSYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDQESKR 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R +  GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + D+ +
Sbjct: 822  SADQEETFEKPFRDHCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDDLE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                ++++RD S  LRHSETG+VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STTKKFSKRDASTFLRHSETGIVDQVMLTLNAEGNKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E +YNGHTGR+L A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLQEYGYHLRGNEVLYNGHTGRKLNAQVFLGPTYYQRLKHMVDDKIHS 1061

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1062 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNL 1121

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CG+IA+ANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1122 CGIIAVANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1173


>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
          Length = 1176

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/832 (69%), Positives = 675/832 (81%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPL+  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMALLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKSLVKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L  T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLTAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL++K  +  L+ R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLRKNHVDMLKDR 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LVA G +EYIDT EEET MI+MT  DL Q +   E AY  TYTHCEIHP+
Sbjct: 648  DY-NNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDK---EYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINTIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKK 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + D+  
Sbjct: 824  IGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDLD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  GTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1124 CGLIAIANMRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMAMNIAPRLMV 1175


>gi|68300792|gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina]
          Length = 853

 Score = 1218 bits (3151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/627 (92%), Positives = 595/627 (94%), Gaps = 20/627 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWV             
Sbjct: 427 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWV------------- 473

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
                  DVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES
Sbjct: 474 -------DVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRES 526

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            EDGGWHDLVAKGFIEY+DTEEEETTMISMTINDL+ A+L+PEEAY++TYTHCEIHPSLI
Sbjct: 527 HEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLITAKLNPEEAYSETYTHCEIHPSLI 586

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 587 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 646

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 647 MEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 706

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+AQGQAS
Sbjct: 707 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 766

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 767 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 826

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAI 627
           GMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 827 GMTYTQEDMPWTVEGITPDIIVNPHAI 853


>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
          Length = 1234

 Score = 1217 bits (3149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/837 (67%), Positives = 678/837 (81%), Gaps = 20/837 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  D  ETKKAY+ GY++H+LL+C+LGR  EDDRDHYGNKRLDLAGPLLG LFR+
Sbjct: 392  MLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGSLFRI 451

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LF+KLT+DV+ Y+QKCVDNGKD NL  AI+++TIT+GL+YSLATGNWG    A ++AGVS
Sbjct: 452  LFKKLTKDVKTYLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATGNWGMQKTA-SKAGVS 510

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYAS+LSHLRRLN+P+GREGK A+PRQLHN+ WGM+CPAETPEGQA GLVKNLA
Sbjct: 511  QVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLA 570

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS   PILEFLEEW TEN EEI P +IP +TKIFVNG WVG+HR+P  LV+TL
Sbjct: 571  LMAYISVGSPQAPILEFLEEWATENLEEIKPQIIPHSTKIFVNGNWVGVHREPNELVRTL 630

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R LRR VD++ EV V+RD+  +ELRIYTD GR  RPLFIVE+ +LL++K  ++ LQ  + 
Sbjct: 631  RSLRRCVDIDAEVSVIRDLMNRELRIYTDAGRVCRPLFIVEENQLLLQKEQVVKLQNHKI 690

Query: 301  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
              +  WH+L+  G +E IDTEEEE  MI+M   D+              YTHCEIHPS+I
Sbjct: 691  -TNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGLG--------TQQYTHCEIHPSMI 741

Query: 361  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
            LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y +N++ RMDT+A VL YPQKPLVTTRA
Sbjct: 742  LGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYCSNFRARMDTMANVLNYPQKPLVTTRA 801

Query: 421  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG- 479
            ME LHFR+LP+GINAIV IA Y+GYNQEDS+IMNQS+IDRG FRS F+R Y D+E+    
Sbjct: 802  MEFLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGLFRSTFYRCYVDQERNKSP 861

Query: 480  -------TLVK--EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
                    LV   E+F +P R N +G+RHGSY KLD DGL  PGTRVSG D+IIGKT+P+
Sbjct: 862  HGGSAATALVSNCEEFEKPSRDNCLGLRHGSYHKLDADGLVAPGTRVSGNDIIIGKTSPL 921

Query: 531  SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
               E      R+ +RD S SLR  E G++D V+LTTNADG +F KVR R++RIPQIGDKF
Sbjct: 922  PVSEDSSLEQRHQKRDASTSLRSHENGIIDSVMLTTNADGFKFTKVRFRNIRIPQIGDKF 981

Query: 591  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
            +SRHGQKGT+GMTY QEDMP+T+EGITPDIIVNPHAIPSRMT+G LIEC++GKV++  G 
Sbjct: 982  ASRHGQKGTIGMTYRQEDMPFTLEGITPDIIVNPHAIPSRMTVGHLIECLLGKVSSQTGD 1041

Query: 651  EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
            EGDATPFTDVTV  I+  LH  GYQ  G E +Y+GHTGR LTA IF+GPT+YQRLKHMVD
Sbjct: 1042 EGDATPFTDVTVQAIADTLHNLGYQRHGNEVLYSGHTGRPLTAQIFIGPTFYQRLKHMVD 1101

Query: 711  DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 770
            DKIHSR RGPV +LTRQP EGR+R+GGLR GEMERDC+I+HG+++FL +RLF  SDAYRV
Sbjct: 1102 DKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRV 1161

Query: 771  HVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            HVC+ CG+IAIANL+K +FECR C+NKT I Q+HIPY+CKLLFQELM+M+IAPR+ T
Sbjct: 1162 HVCDICGIIAIANLRKMTFECRNCRNKTQISQLHIPYSCKLLFQELMSMSIAPRLFT 1218


>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
          Length = 1176

 Score = 1216 bits (3145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/832 (69%), Positives = 677/832 (81%), Gaps = 7/832 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 346  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 405

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR + QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 406  LFKNLMKEVRMFAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 465

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 466  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 525

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 526  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 585

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+K+  +  L++R
Sbjct: 586  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKRNHVNMLKER 645

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   + GW  LVA G +EYIDT EEET MI+M ++DL   +   E AY  T+THCEIHP+
Sbjct: 646  EF-NNYGWQVLVASGVVEYIDTLEEETVMIAMNLDDLRGGQ-EKEYAYCSTHTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VL+YP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPHKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FRS F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSCFYRSYKDSESKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + D+ +
Sbjct: 824  IGDQEEQFEKPTRQTCQGMRNAMYDKLDDDGIITPGVRVSGDDVVIGKTITLPDTDDDLE 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  GTTRRFTKRDASTFLRNSETGCVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTLLQEYGYHLRGNELMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNL 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Nasonia vitripennis]
          Length = 1174

 Score = 1215 bits (3143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/831 (69%), Positives = 674/831 (81%), Gaps = 9/831 (1%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR L
Sbjct: 347  LPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 406

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
            F+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVS
Sbjct: 407  FKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHLARAGVS 466

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 467  QVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLA 526

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TL
Sbjct: 527  LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATL 586

Query: 241  RRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            R+LRR++D+  +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L+ R+
Sbjct: 587  RKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVENQTLLLKKRHIDMLKDRD 646

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
               DG W +LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++
Sbjct: 647  YNNDG-WQELVASGVVEYIDTLEEETVMIAMSPDDLKQEK---EYAYCSTYTHCEIHPAM 702

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILGVCASIIPFPDHNQSPRNTYQ  M  + MG+Y+TN+  RMDTLA+VLYYP KPLVTTR
Sbjct: 703  ILGVCASIIPFPDHNQSPRNTYQVNMFPKVMGVYITNFHVRMDTLAHVLYYPHKPLVTTR 762

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K  
Sbjct: 763  SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKKF 822

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 537
               +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE   
Sbjct: 823  GDQEEQFEKPSRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTMTLPENDDELDS 882

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
               R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQK
Sbjct: 883  TTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQK 942

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF
Sbjct: 943  GTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPF 1002

Query: 658  TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
             D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR
Sbjct: 1003 NDAVNVQKISTLLCEYGYQLRGNEIMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1062

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
             RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  C
Sbjct: 1063 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFC 1122

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            GLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1123 GLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1173


>gi|40643994|emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [Gardenia sp.
           Oxelman 2319]
          Length = 627

 Score = 1212 bits (3137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/627 (90%), Positives = 606/627 (96%)

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNG
Sbjct: 1   AETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNG 60

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 284
           CWVGIHR+P++LV+TLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQR
Sbjct: 61  CWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQR 120

Query: 285 LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
           LLIKK+DI+ALQQRE  ++ GWHDLVAKG+IEY+DTEEEETTMISMTINDL+ +RL+P+E
Sbjct: 121 LLIKKKDILALQQREYTDEFGWHDLVAKGYIEYVDTEEEETTMISMTINDLMNSRLNPDE 180

Query: 345 AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 404
           AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RMDTL
Sbjct: 181 AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGMYITNYQLRMDTL 240

Query: 405 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 464
           AYVLYYPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSIDRGFFR
Sbjct: 241 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFR 300

Query: 465 SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 524
           S+FFRSYRDEEKKMGTLVKE+FG P+R NTMGMRHGSYDKLD DG APPGTRVSGEDVII
Sbjct: 301 SIFFRSYRDEEKKMGTLVKEEFGSPNRENTMGMRHGSYDKLDADGFAPPGTRVSGEDVII 360

Query: 525 GKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           GKTT + QDEAQGQASRYTRRDHS SLRHSE+G+VDQV LTTNADGLRFVKVR+RSVRIP
Sbjct: 361 GKTTSLPQDEAQGQASRYTRRDHSTSLRHSESGIVDQVALTTNADGLRFVKVRMRSVRIP 420

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           QIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 421 QIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIPSRMTIGQLIECIMGKV 480

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE +YNGHTGR +  +IF+GPTYYQR
Sbjct: 481 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERVYNGHTGRIMGDLIFMGPTYYQR 540

Query: 705 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 764
           LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQ
Sbjct: 541 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQ 600

Query: 765 SDAYRVHVCEHCGLIAIANLKKNSFEC 791
           SDAYRVH+CEHCGLIA+A  KK+SFEC
Sbjct: 601 SDAYRVHICEHCGLIALACFKKSSFEC 627


>gi|67810650|gb|AAY82001.1| RNA polymerase II second largest subunit [Sphagnum sp. JL-2005]
          Length = 704

 Score = 1210 bits (3131), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/659 (86%), Positives = 609/659 (92%), Gaps = 2/659 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALM YITVGSA  PILEFLEEW TENFEEISPAVIP +T
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMAYITVGSAVNPILEFLEEWSTENFEEISPAVIPNST 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNG WVGIHRDPE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGSWVGIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVEKQRLLIKK D+ ALQQ+E+ E  GW+DLV+KGFIEY+DTEEEETTMISMTI DLV A
Sbjct: 121 IVEKQRLLIKKSDVRALQQKEATE-SGWYDLVSKGFIEYVDTEEEETTMISMTIADLVNA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R +PE +++ TYTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180 RNNPEASFSVTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRS+F+RSYRDEEK+ GTL+KE+F RP+R NT GMRHGSYD+LDDDGLAPPGTRVS
Sbjct: 300 DRGFFRSIFYRSYRDEEKRQGTLIKEEFERPNRENTTGMRHGSYDELDDDGLAPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKTTP+ QD+   QA RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK+RV
Sbjct: 360 GEDVIIGKTTPLPQDDNASQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRV 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RS+RIPQIGDKFSSRHGQK TVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSIRIPQIGDKFSSRHGQKCTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAHMGKEGDATPFTD TVDNISKALHKCGYQMRGFE MYNGHTGRRL+A IFLG
Sbjct: 480 CIMGKVAAHMGKEGDATPFTDATVDNISKALHKCGYQMRGFEVMYNGHTGRRLSAHIFLG 539

Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 758
           PTYYQRLKHM+DDKIHSRGRGPVQILTRQPAEGRSR GGLRFGEMERDCMIAHGA+HFLK
Sbjct: 540 PTYYQRLKHMMDDKIHSRGRGPVQILTRQPAEGRSRVGGLRFGEMERDCMIAHGAAHFLK 599

Query: 759 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK-LLFQEL 816
           ERLFDQSDAYRVHVCEHCGLIAIANLKKN++ECR CKNK  +      YA     FQ+L
Sbjct: 600 ERLFDQSDAYRVHVCEHCGLIAIANLKKNTYECRACKNKQTLCSALYHYALXTFFFQKL 658


>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
 gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
          Length = 1176

 Score = 1209 bits (3128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/832 (68%), Positives = 672/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 648  DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 824  VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+ +RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  SNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
 gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
          Length = 1176

 Score = 1208 bits (3126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/832 (68%), Positives = 672/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKTHVEMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 648  DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 824  VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+ +RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  SNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
 gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
          Length = 1176

 Score = 1208 bits (3125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/832 (68%), Positives = 673/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 648  DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 824  VGDQEENFEKPNRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+++RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  SNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDM +T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
 gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
 gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
 gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
          Length = 1176

 Score = 1208 bits (3125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/832 (68%), Positives = 672/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 648  DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 824  VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+ +RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  SNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
 gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
          Length = 1176

 Score = 1208 bits (3125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/832 (68%), Positives = 672/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 648  DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 824  VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+ +RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  SNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
 gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
          Length = 1176

 Score = 1207 bits (3123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/832 (68%), Positives = 672/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKTHVEMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 648  DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 824  VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+ +RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  SNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
          Length = 1173

 Score = 1206 bits (3121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/831 (68%), Positives = 674/831 (81%), Gaps = 13/831 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDL GPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLGGPLLSFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK VD GKD N++ A+K + I+ GL+YSLATGNW  Q  A   RAGV
Sbjct: 408  MFKNLIKEVRLYAQKFVDRGKDFNIELAVKTRIISDGLRYSLATGNWADQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  +TKIFVNGCWVGIHRDPE+L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSSIADSTKIFVNGCWVGIHRDPELLMST 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-RLLIKKRDIIALQQ 297
            LR+LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IV+ + RLL+KK+DI  L+ 
Sbjct: 588  LRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVDSEGRLLMKKKDIDLLKD 647

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
            R    D GW  LV+ G +EYIDT EEET MI+MT NDL Q R   ++ Y   +THCEIHP
Sbjct: 648  R----DYGWQSLVSSGVVEYIDTLEEETIMIAMTPNDLRQNR---DDTYCANFTHCEIHP 700

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            S+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVT
Sbjct: 701  SMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVT 760

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            TR+ME+L FR+LPAGIN+IVAI CY+GYNQEDS+I+N S+++RGFFRS+F+RSYRD E +
Sbjct: 761  TRSMEYLRFRELPAGINSIVAILCYTGYNQEDSIIINASAVERGFFRSVFYRSYRDAEVR 820

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEA 535
                  E F +P+R    GMRH  YDKLD+DG+  PG RVSG+DV+IGKT  +  ++DE 
Sbjct: 821  RLGDQDEQFEKPNRLTCQGMRHAIYDKLDEDGIIAPGVRVSGDDVVIGKTITLMENEDEL 880

Query: 536  QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
            +    +YT+RD S  LR SETG+VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 881  ESVTKKYTKRDASTFLRRSETGVVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHG 940

Query: 596  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
            QKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDAT
Sbjct: 941  QKGTCGIQYRQEDMPFTSEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDAT 1000

Query: 656  PFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
            PF D V V  IS  L + GY +RG E MYNG+TGR++ A IF+GPTYYQRLKHMVDDKIH
Sbjct: 1001 PFNDAVNVQKISHLLQEYGYNLRGNEIMYNGYTGRKINAQIFIGPTYYQRLKHMVDDKIH 1060

Query: 715  SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 774
            SR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF  SD YR+HVC 
Sbjct: 1061 SRARGPVQILVRQPLEGRARDGGLRFGEMERDCQISHGAAQFLRERLFTVSDPYRIHVCN 1120

Query: 775  HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
             CGLI IANL+ N+FEC+ CKNKT I QVH+PYA KLL QELMAM I+PR+
Sbjct: 1121 LCGLIVIANLRNNTFECKSCKNKTQISQVHLPYASKLLMQELMAMLISPRI 1171


>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
 gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 140 kDa
            polypeptide
 gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
 gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
          Length = 1176

 Score = 1206 bits (3120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/832 (68%), Positives = 672/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 648  DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 824  VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+++RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  SNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDM +T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
 gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
          Length = 1176

 Score = 1206 bits (3119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/832 (68%), Positives = 672/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 648  DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 824  VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+++RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  SNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDM +T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
 gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
          Length = 1175

 Score = 1205 bits (3118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/832 (68%), Positives = 671/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKTHVEMLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 647  DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 823  VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+ +RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  SNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDM +T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
 gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
          Length = 1176

 Score = 1204 bits (3116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/832 (68%), Positives = 671/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 348  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 588  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKER 647

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EYIDT EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 648  DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 704  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 764  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 824  VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+++RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884  SNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDM +T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944  KGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+ CKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1124 CGLIAIANLRNNTFECKSCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
 gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
          Length = 1204

 Score = 1204 bits (3114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/852 (66%), Positives = 678/852 (79%), Gaps = 30/852 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHV   +  E+KKAY+FGY++HRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 350  LLPHVSMAEGSESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRM 409

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRK+T+DV  Y+QKCV++ KD NL  AIK  TI+ GLKYSLATGNWG Q  A   +AGV
Sbjct: 410  LFRKMTKDVYRYLQKCVESNKDFNLNLAIKHHTISQGLKYSLATGNWGDQKKAGAAKAGV 469

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 470  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 529

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VGS + P+++FL+EW  E+ EE + +     TK+FVNG W+G+HRDP  LV+T
Sbjct: 530  SLMACISVGSISAPVIDFLQEWNLESLEENARSSEATFTKVFVNGVWMGVHRDPAKLVET 589

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            +RRLRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q LL++K  + AL Q  
Sbjct: 590  IRRLRRKDDISQEVSVVRDIREKELRVYTDAGRVCRPLFIVENQSLLLEKHHVHALTQ-- 647

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE--------------- 344
                  W  LV +G IE +D EEEET MI+MT  DL  +R+ PEE               
Sbjct: 648  ---GAKWDSLVKQGIIELLDAEEEETVMIAMTPEDLENSRMTPEERAAQQAEEEVDMTAT 704

Query: 345  ------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                  A   T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN+ 
Sbjct: 705  KVAHTMANTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFI 764

Query: 399  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 765  LRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 824

Query: 459  DRGFFRSLFFRSYRDEEKK-MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
            DRG FRS+++R Y D EKK +G +  E+F +P R NT+ M+HG+YDKL+DDGL  PGT V
Sbjct: 825  DRGLFRSIYYRGYTDMEKKSVGMMPTEEFEKPSRDNTLRMKHGTYDKLEDDGLIAPGTGV 884

Query: 518  SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
            +GED+IIGKT PI  D E  GQ ++ +TRRD S  L+ +E+G++DQVLLTTN DG + ++
Sbjct: 885  NGEDIIIGKTAPIPPDSEELGQRTKNHTRRDVSTPLKSTESGIIDQVLLTTNEDGKKLIR 944

Query: 576  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
            VRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T +GI PDI++NPHAIPSRMTIG 
Sbjct: 945  VRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAQGIVPDIVINPHAIPSRMTIGH 1004

Query: 636  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
            L+EC++ KVA  +G EGDATPFTD+TV+ +SK+L   G+Q RG E MY+GHTGR+L A +
Sbjct: 1005 LVECLLSKVATLIGNEGDATPFTDLTVEAVSKSLAAKGFQQRGLEVMYHGHTGRKLQAQV 1064

Query: 696  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 755
            +LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + 
Sbjct: 1065 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAG 1124

Query: 756  FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 815
            FLKERLFD SDAYR+HVC+ CGL AIANLKK SFECR CKNKT   Q++IPYA KLLFQE
Sbjct: 1125 FLKERLFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQE 1184

Query: 816  LMAMAIAPRMLT 827
            L AM IAPR+ T
Sbjct: 1185 LQAMNIAPRLYT 1196


>gi|336376994|gb|EGO05329.1| hypothetical protein SERLA73DRAFT_101102 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336390144|gb|EGO31287.1| DNA-directed RNA polymerase II, subunit 2 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1209

 Score = 1203 bits (3113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/852 (67%), Positives = 681/852 (79%), Gaps = 26/852 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 349  MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 408

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 409  LFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 468

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 469  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 528

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 529  ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 587

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ I  L Q  
Sbjct: 588  IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGY 647

Query: 300  SPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD- 348
              +DG    W  LV  G IE +D EEEET MISMT  DL  +RL       H  +   D 
Sbjct: 648  RDDDGEEYKWEHLVKSGIIELLDAEEEETVMISMTPEDLENSRLQSAGIDPHTNDGDYDP 707

Query: 349  -----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                       T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+
Sbjct: 708  AARLKAGNNSHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNF 767

Query: 398  QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
              RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSS
Sbjct: 768  LVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 827

Query: 458  IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
            IDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT V
Sbjct: 828  IDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGV 887

Query: 518  SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
            SGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVK
Sbjct: 888  SGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVK 947

Query: 576  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
            +RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI++NPHAIPSRMTIG 
Sbjct: 948  IRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGH 1007

Query: 636  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
            L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A +
Sbjct: 1008 LVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQV 1067

Query: 696  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 755
            +LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + 
Sbjct: 1068 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAG 1127

Query: 756  FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 815
            FLKERLF+ SDAYR+HVC+ CGL AIANLKK SFECR CKNKT   Q++IPYA KLLFQE
Sbjct: 1128 FLKERLFEASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQE 1187

Query: 816  LMAMAIAPRMLT 827
            L +M IA R+ T
Sbjct: 1188 LQSMNIAARLYT 1199


>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
            delicata TFB-10046 SS5]
          Length = 1217

 Score = 1203 bits (3112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/852 (66%), Positives = 683/852 (80%), Gaps = 27/852 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   +  E+KKAY+ GY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 360  MLPHISMAEGSESKKAYFLGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRM 419

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+ NL  A+KA TIT+GLKYSLATGNWG Q  +   +AGV
Sbjct: 420  LFRKLTKDVYRYLQKCVEARKEFNLSLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGV 479

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 480  SQVLNRYTFASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 539

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P++EFLEEWG E+ EE + + +P +TK+FVNG W+G+HRDP  LVKT
Sbjct: 540  ALMACISVGSLSAPVIEFLEEWGLESLEENAHSGVP-STKVFVNGVWMGVHRDPANLVKT 598

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            +++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L+IKK  +  +Q +E
Sbjct: 599  IKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVEDQQLVIKKHHVEWIQNKE 658

Query: 300  SPEDGG---WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-----HPEEA------ 345
              E G    W +L+  G IE +D EEEET MI MT +DL  +RL      P +A      
Sbjct: 659  D-ESGAPYKWDNLIKTGVIELLDAEEEETVMICMTSDDLENSRLMSRGLAPRDADNEFDP 717

Query: 346  --------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                     A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+
Sbjct: 718  AARLKSVVNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNF 777

Query: 398  QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
            Q R DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSS
Sbjct: 778  QVRQDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 837

Query: 458  IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
            IDRG FRS+++RSY D EKK G +  E+F +P R  T+ M+HG+YDKL+DDGL  PGT V
Sbjct: 838  IDRGLFRSIYYRSYMDVEKKSGMVALEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGV 897

Query: 518  SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
            +GED+IIGKT P+ QD E  GQ +R + +RD S  L+ +E G+VDQVL+TTN DG +FVK
Sbjct: 898  AGEDIIIGKTAPLPQDSEELGQRTRTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVK 957

Query: 576  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
            +R+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPDII+NPHAIPSRMTIG 
Sbjct: 958  IRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGVTPDIIINPHAIPSRMTIGH 1017

Query: 636  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
            L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GY  RG E MY+GHTGR+L A +
Sbjct: 1018 LVECLLSKVATMIGNEGDATPFTDLTVESVSQVLRQRGYHSRGLEVMYHGHTGRKLQAQV 1077

Query: 696  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 755
            +LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + 
Sbjct: 1078 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGLAA 1137

Query: 756  FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 815
            FLKERLFD SDAYR+HVC+ CGL AIANLKK SFECR CKNK  + Q++IPYA KLL QE
Sbjct: 1138 FLKERLFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKVAVSQLYIPYAAKLLIQE 1197

Query: 816  LMAMAIAPRMLT 827
            L +M IA R+ T
Sbjct: 1198 LQSMNIAARLYT 1209


>gi|389751199|gb|EIM92272.1| DNA-dependent RNA polymerase II second largest subunit [Stereum
            hirsutum FP-91666 SS1]
          Length = 1230

 Score = 1202 bits (3111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/853 (66%), Positives = 684/853 (80%), Gaps = 27/853 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   +  E+KKAY+FGY+IHRLLL A+ RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 370  MLPHISMSEGSESKKAYFFGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRM 429

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRDV  Y+QKCV+  KD NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 430  LFRKLTRDVYRYLQKCVETHKDFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGV 489

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 490  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 549

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VGS + P+++FLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L+KT
Sbjct: 550  SLMATISVGSLSLPVIDFLEEWGLESLEENAHSATP-TTKVFVNGVWMGVHRDPANLIKT 608

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
            +++LRR+ D++ EV +VRDIR +ELR+YTD GR  RPLF+VE Q+L + K+ I  L +  
Sbjct: 609  IKKLRRKDDIHPEVSIVRDIRERELRLYTDAGRVCRPLFVVEDQQLAVTKKHINMLTRGT 668

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD-- 348
             ++ E+  W++L+  G +EY+D EEEET MI MT  DL  +RL       H E++  D  
Sbjct: 669  DDNGEEFKWNNLIKSGVVEYLDAEEEETVMICMTPEDLENSRLQSSGINPHAEDSDFDPA 728

Query: 349  ------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
                        T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN
Sbjct: 729  ARLKASSGLNTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTN 788

Query: 397  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
            +  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 789  FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 848

Query: 457  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
            SIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT 
Sbjct: 849  SIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTG 908

Query: 517  VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
            V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN +G +FV
Sbjct: 909  VNGEDIIIGKTAPIPPDSEELGQRTRIHTRRDVSTPLKSTESGIVDQVLITTNHEGQKFV 968

Query: 575  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
            KVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHAIPSRMTIG
Sbjct: 969  KVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIG 1028

Query: 635  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
             L+EC++ KVA  +G EGDATPFTD+TV+++S+ L   GYQ RG E MY+GHTGR+L A 
Sbjct: 1029 HLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRAQGYQSRGLEVMYHGHTGRKLQAQ 1088

Query: 695  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 754
            ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG +
Sbjct: 1089 VYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVA 1148

Query: 755  HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 814
             FLKERLFD SDAYR+HVC+ CGL AIANLKK SFECR CKNKT   Q+HIPYA KLLFQ
Sbjct: 1149 GFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQIHIPYAAKLLFQ 1208

Query: 815  ELMAMAIAPRMLT 827
            EL +M IA R+ T
Sbjct: 1209 ELQSMNIAARLYT 1221


>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
            edodes]
          Length = 1228

 Score = 1201 bits (3108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/851 (67%), Positives = 682/851 (80%), Gaps = 24/851 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +  E+KKA++FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 370  MLPHVSMAEGSESKKAFFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 429

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 430  LFRKLTKDVYRYMQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 489

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 490  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 549

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HR+P  LVKT
Sbjct: 550  ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTPTMTKVFVNGVWMGVHREPANLVKT 609

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL--QQ 297
            +R+LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L+++K+ I  L   Q
Sbjct: 610  IRKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKKHIKWLLNGQ 669

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-----PEE-------- 344
             +   +  W  LV  G +E +D EEEET MISMT  DL  +RL      P E        
Sbjct: 670  NDEGSEFKWEHLVKNGIVELLDAEEEETVMISMTPEDLENSRLQQQGIDPHENDGEFDPA 729

Query: 345  ------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                    A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+ 
Sbjct: 730  ARLKAGISAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 789

Query: 399  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 790  IRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 849

Query: 459  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
            DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT V 
Sbjct: 850  DRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVR 909

Query: 519  GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
            GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +FVK+
Sbjct: 910  GEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKI 969

Query: 577  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
            RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI++NPHAIPSRMTIG L
Sbjct: 970  RVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHL 1029

Query: 637  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
            +EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E M++GHTGR+L A ++
Sbjct: 1030 VECLLSKVATLIGNEGDATPFTDLTVESVSMFLKQKGYQSRGLEVMFHGHTGRKLQAQVY 1089

Query: 697  LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
            LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + F
Sbjct: 1090 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGF 1149

Query: 757  LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
            LKERLF+ SDAYRVHVCE CGL AIANLKK SFECR CKNKT + Q++IPYA KLLFQEL
Sbjct: 1150 LKERLFEASDAYRVHVCEICGLTAIANLKKQSFECRACKNKTAVSQLYIPYAAKLLFQEL 1209

Query: 817  MAMAIAPRMLT 827
             +M IA R+ T
Sbjct: 1210 QSMNIAARLYT 1220


>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
          Length = 1123

 Score = 1201 bits (3108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/832 (68%), Positives = 671/832 (80%), Gaps = 9/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 295  MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 354

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 355  LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 414

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 415  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 474

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 475  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 534

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L++R
Sbjct: 535  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKER 594

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   +  W  LVA G +EY+ T EEET MI+M+  DL Q +   + AY  TYTHCEIHP+
Sbjct: 595  DY-NNYSWQVLVASGVVEYMYTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 650

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 651  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 710

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 711  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 770

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 771  VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 830

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+++RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 831  SNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 890

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDM +T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 891  KGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 950

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 951  FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1010

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  
Sbjct: 1011 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1070

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1071 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1122


>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
            squalens LYAD-421 SS1]
          Length = 1222

 Score = 1197 bits (3098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/850 (67%), Positives = 683/850 (80%), Gaps = 24/850 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 366  MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRM 425

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+ N+  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 426  LFRKLTKDVYRYLQKCVETHKEFNISLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGV 485

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 486  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 545

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + P++EFLEEWG E+ EE + A  P  TK+FVNG W+G+HRDP  LV T
Sbjct: 546  SLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP-CTKVFVNGVWMGVHRDPVKLVST 604

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL-QQR 298
            LR+LRR+ D+N EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LLI+K+ I +L + +
Sbjct: 605  LRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKKHIESLVRAK 664

Query: 299  ESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEE------ 344
            + P  +  W  L+  G IE +D EEEET MI MT  DL  +RL       H +E      
Sbjct: 665  DDPTFNYNWDSLLKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADEEEDPSA 724

Query: 345  -----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 399
                   A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN+  
Sbjct: 725  RLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLI 784

Query: 400  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 459
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSID
Sbjct: 785  RMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID 844

Query: 460  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 519
            RG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V+G
Sbjct: 845  RGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNG 904

Query: 520  EDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 577
            ED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E G+VDQVL+TTNA+G +FVK+R
Sbjct: 905  EDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIR 964

Query: 578  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 637
            VRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+
Sbjct: 965  VRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLV 1024

Query: 638  ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 697
            EC++ K+A  +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A ++L
Sbjct: 1025 ECLLSKLATLIGNEGDATPFTDLTVESVSQYLRQKGYQSRGLEVMYHGHTGRKLQAQVYL 1084

Query: 698  GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFL 757
            GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FL
Sbjct: 1085 GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFL 1144

Query: 758  KERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 817
            KERLF+ SDAYR+HVC+ CGL AIANLKK +FECR CKNKT   Q++IPYA KLLFQEL 
Sbjct: 1145 KERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTACSQIYIPYAAKLLFQELQ 1204

Query: 818  AMAIAPRMLT 827
            +M IA R+ T
Sbjct: 1205 SMNIAARLYT 1214


>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
            B]
          Length = 1242

 Score = 1197 bits (3096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/866 (66%), Positives = 683/866 (78%), Gaps = 41/866 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 371  MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRM 430

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV++ K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 431  LFRKLTKDVYRYLQKCVESHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGV 490

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 491  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 550

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 551  ALMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHRDPANLVKT 609

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            +++LRR+ D++ EV VVRDIR +ELRIYTD GR  RPLFIVE Q+LL+ K+ I  L + +
Sbjct: 610  IKKLRRKDDISPEVSVVRDIRERELRIYTDAGRVCRPLFIVEDQQLLLTKKHISWLSRSK 669

Query: 300  SPE------------DGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQ------ 337
              E            +G     W +L+  G IE +D EEEET MI M+  DL        
Sbjct: 670  EEEKQRMSRGEDKDAEGAYVYRWDNLIKDGVIELLDAEEEETVMICMSPEDLENTRLIAA 729

Query: 338  --------------ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                          ARL P  +   TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 730  GVDPRADSTEVDPSARLKPTPS-IHTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 788

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA+VAI CYS
Sbjct: 789  AMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAVVAILCYS 848

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YD
Sbjct: 849  GYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPSRENTLRMKHGTYD 908

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 561
            KL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQ
Sbjct: 909  KLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQ 968

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            VL+TTNA+G +FVK+RVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI+
Sbjct: 969  VLITTNAEGQKFVKIRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIV 1028

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG E 
Sbjct: 1029 INPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQVLRQKGYQSRGLEV 1088

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFG
Sbjct: 1089 MYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFG 1148

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 801
            EMERDCMI+HG + FLKERLF+ SDAYR+HVC+ CGL AIANLKK  FECR CKNKT I 
Sbjct: 1149 EMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQMFECRSCKNKTAIS 1208

Query: 802  QVHIPYACKLLFQELMAMAIAPRMLT 827
            Q++IPYA KLLFQEL +M IA R+ T
Sbjct: 1209 QLYIPYAAKLLFQELQSMNIAARLYT 1234


>gi|47208444|emb|CAF93098.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1217

 Score = 1197 bits (3096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/902 (64%), Positives = 684/902 (75%), Gaps = 80/902 (8%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 320  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 379

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGV 119
            +F+ L +++R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG    A   RAGV
Sbjct: 380  MFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGV 439

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 440  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 499

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 500  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 559

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++R
Sbjct: 560  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKER 619

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 620  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 674

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 675  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 734

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 735  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 794

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  Y+KLDDDGL  PG RVSGEDVIIGKT   P ++DE  
Sbjct: 795  GFDQEEIFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGEDVIIGKTVTLPENEDELD 854

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR------------------- 577
            G   RYT+RD S  LR SETG+VDQV++T N +G +F K+R                   
Sbjct: 855  GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVSRRHLHLTRLRSSPGFKP 914

Query: 578  -----------VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
                       VRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHA
Sbjct: 915  SRMLSHSCSLQVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 974

Query: 627  IPSRMTIGQLIECIMGK----------------------------------------VAA 646
            IPSRMT+G LIEC+ GK                                        V+A
Sbjct: 975  IPSRMTVGHLIECLQGKVWTSTSTLHLPELHCSVPLILVAANTGWAVLYQLFPVSFQVSA 1034

Query: 647  HMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
            + G+ GDATPF D V V  +S  L + GY +RG E +YNG TGR+LT+ IF+GPTYYQRL
Sbjct: 1035 NKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRL 1094

Query: 706  KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 765
            KHMVDDKIHSR RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FLKERLF+ S
Sbjct: 1095 KHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEAS 1154

Query: 766  DAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
            D Y+VHVC  CGL+AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM
Sbjct: 1155 DPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1214

Query: 826  LT 827
            +T
Sbjct: 1215 MT 1216


>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
          Length = 1104

 Score = 1197 bits (3096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/811 (70%), Positives = 664/811 (81%), Gaps = 10/811 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 299  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 358

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 359  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 418

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 419  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 478

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 479  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 538

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++R
Sbjct: 539  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 598

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS
Sbjct: 599  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 653

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 654  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 713

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K 
Sbjct: 714  RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 773

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
            G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +
Sbjct: 774  GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 833

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 834  GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 893

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 894  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 953

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 954  FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1013

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  
Sbjct: 1014 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1073

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIP 806
            CG++AIAN + +++ECRGC+NKT I  V +P
Sbjct: 1074 CGIMAIANTRTHTYECRGCRNKTQISLVRMP 1104


>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
            gorilla gorilla]
          Length = 1097

 Score = 1196 bits (3094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/824 (69%), Positives = 671/824 (81%), Gaps = 10/824 (1%)

Query: 9    DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 68
            DF + +      Y++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 278  DFEDPEMMEMVIYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 337

Query: 69   VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 127
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 338  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 397

Query: 128  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 187
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 398  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 457

Query: 188  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 247
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 458  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 517

Query: 248  DV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 306
            D+  +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 518  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 576

Query: 307  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 366
             DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCAS
Sbjct: 577  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCAS 632

Query: 367  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 633  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 692

Query: 427  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 693  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 752

Query: 487  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 544
             +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+
Sbjct: 753  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 812

Query: 545  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 813  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 872

Query: 605  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 663
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 873  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 932

Query: 664  NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 723
             IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 933  KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 992

Query: 724  LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 783
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN
Sbjct: 993  LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1052

Query: 784  LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1053 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1096


>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
            disseminatus]
          Length = 1241

 Score = 1195 bits (3092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/851 (67%), Positives = 678/851 (79%), Gaps = 25/851 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 384  MLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRM 443

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q     ++AGV
Sbjct: 444  LFRKLTKDVYRYLQKCVETHKEFNLTLAVKQQTITNGLKYSLATGNWGDQKKTMSSKAGV 503

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 504  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 563

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 564  ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 622

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
            +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LL++K+ I  L    
Sbjct: 623  IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIGWLNDGV 682

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE------------- 344
             +  E   W +L+  G IE +D EEEET MISMT  DL  +R   E              
Sbjct: 683  DDQGEPYKWENLIKSGVIELLDAEEEETVMISMTPEDLDISRRQAEGEETPENDAEFDPA 742

Query: 345  ------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                   +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+ 
Sbjct: 743  ARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 802

Query: 399  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 803  VRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 862

Query: 459  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
            DRG FRS+++RSY D EKK G L  E+F +P R  T+ M+HG+YDK++DDG   PGT V+
Sbjct: 863  DRGLFRSMYYRSYMDLEKKSGALQLEEFEKPTRDTTLRMKHGTYDKIEDDGFIAPGTNVT 922

Query: 519  GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
            GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTNA+G +FVKV
Sbjct: 923  GEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTENGIVDQVLITTNAEGQKFVKV 982

Query: 577  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
            RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTIG L
Sbjct: 983  RVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIGHL 1042

Query: 637  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
            +EC++ KVA  +G EGDATPFTD+TV+ +S  L + GYQ RG E MY+GHTGR+L A ++
Sbjct: 1043 VECLLSKVATLIGNEGDATPFTDLTVEAVSNFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 1102

Query: 697  LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
            LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + F
Sbjct: 1103 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGF 1162

Query: 757  LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
            LKERLF+ SDAYR+HVC+ CGL AIANLKK SFECR CKNKT   Q++IPYA KLLFQEL
Sbjct: 1163 LKERLFEASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQEL 1222

Query: 817  MAMAIAPRMLT 827
             +M IA R+ T
Sbjct: 1223 QSMNIAARLYT 1233


>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
          Length = 1226

 Score = 1195 bits (3091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/851 (67%), Positives = 678/851 (79%), Gaps = 25/851 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +  E+KKAY+FGY+IHRLLL A+ RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 369  MLPHVSMAEGSESKKAYFFGYMIHRLLLAAMERRDLDDRDHFGKKRLDLAGPLLANLFRM 428

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 429  LFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGV 488

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 489  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 548

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 549  SLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHRDPANLVKT 607

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
            +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LL+ K+ I  L    
Sbjct: 608  IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLTKKHIKYLNDGV 667

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE-------------- 343
             +  E   W  L+  G IE +D EEEET MISM   DL  +RL                 
Sbjct: 668  DDQNEQYKWDQLIKGGVIELLDAEEEETVMISMNPEDLENSRLQSSGMDPHANDPDFDPA 727

Query: 344  -----EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                    A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+ 
Sbjct: 728  ARLKPTITAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 787

Query: 399  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 788  VRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 847

Query: 459  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
            DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT V+
Sbjct: 848  DRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTGVN 907

Query: 519  GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
            GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNA+G +FVK+
Sbjct: 908  GEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKI 967

Query: 577  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
            RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+I+NPHAIPSRMTIG L
Sbjct: 968  RVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHL 1027

Query: 637  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
            +EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A ++
Sbjct: 1028 VECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVY 1087

Query: 697  LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
            LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + F
Sbjct: 1088 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAF 1147

Query: 757  LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
            LKERLF+ SDAYR+HVC+ CGL AIANLKK +FECR CKNKT   Q++IPYA KLLFQEL
Sbjct: 1148 LKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQLYIPYAAKLLFQEL 1207

Query: 817  MAMAIAPRMLT 827
             +M IA R+ T
Sbjct: 1208 QSMNIAARLYT 1218


>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
            versicolor FP-101664 SS1]
          Length = 1231

 Score = 1194 bits (3088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/856 (66%), Positives = 682/856 (79%), Gaps = 30/856 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 369  MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRM 428

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+  L  A+K  TIT+GLKYSLATGNWG Q     ++AGV
Sbjct: 429  LFRKLTKDVYRYLQKCVETHKEFQLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGV 488

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 489  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 548

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 549  SLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 607

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-R 298
            +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LL++K+ I  L + +
Sbjct: 608  IKKLRRKDDISAEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIENLARGK 667

Query: 299  ESPEDGG------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-----PEE--- 344
            E PE         W +L+  G IE +D EEEET MI MT  DL  +RL      P E   
Sbjct: 668  EEPEKDATKFEYKWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHENDG 727

Query: 345  -----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 393
                         A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 728  ELDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 787

Query: 394  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 453
            +TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA+VAI CYSGYNQEDSVIM
Sbjct: 788  LTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAVVAILCYSGYNQEDSVIM 847

Query: 454  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 513
            NQSSIDRG FRS+++RSY D EKK G    E+F +P R +T+ M+HG+YDKL+DDGL  P
Sbjct: 848  NQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDSTLRMKHGTYDKLEDDGLIAP 907

Query: 514  GTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGL 571
            GT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E G++DQVL+TTNA+G 
Sbjct: 908  GTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQ 967

Query: 572  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 631
            +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRM
Sbjct: 968  KFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRM 1027

Query: 632  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
            TIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR++
Sbjct: 1028 TIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEIMYHGHTGRKI 1087

Query: 692  TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
             A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+H
Sbjct: 1088 QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISH 1147

Query: 752  GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL 811
            G + FLKERLF+ SDAYR+HVC+ CGL AIANLKK +FECR C+NKT   Q++IPYA KL
Sbjct: 1148 GVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACRNKTACSQIYIPYAAKL 1207

Query: 812  LFQELMAMAIAPRMLT 827
            LFQEL +M IA R+ T
Sbjct: 1208 LFQELQSMNIAARLYT 1223


>gi|392597726|gb|EIW87048.1| DNA-dependent RNA polymerase II second largest subunit [Coniophora
            puteana RWD-64-598 SS2]
          Length = 1228

 Score = 1193 bits (3087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/853 (67%), Positives = 681/853 (79%), Gaps = 27/853 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +  E+KKAY+FGY+IHRLLL A+ RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 367  MLPHVSMSEGSESKKAYFFGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRM 426

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 427  LFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGV 486

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 487  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 546

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P++EFLEEWG E+ EE + +     TK+FVNG W+G+HRDP  LVKT
Sbjct: 547  ALMSCISVGSFSAPVIEFLEEWGLESLEENAHSS-AACTKVFVNGVWMGVHRDPANLVKT 605

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
            +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LL++K+ I  L Q  
Sbjct: 606  IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVEDQQLLLQKKHIKWLNQGY 665

Query: 298  --RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP--------EEAY- 346
               +  E+  W  LV  G IE +D EEEET MI+MT  DL  +RL          +E Y 
Sbjct: 666  RDDDPTEEFKWDQLVKGGVIELLDAEEEETVMIAMTPEDLENSRLQSAGIDTRQSDEDYD 725

Query: 347  ----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
                      A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN
Sbjct: 726  PAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTN 785

Query: 397  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
            +  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 786  FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 845

Query: 457  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
            SIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT 
Sbjct: 846  SIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTG 905

Query: 517  VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
            VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FV
Sbjct: 906  VSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFV 965

Query: 575  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
            KVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG
Sbjct: 966  KVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIG 1025

Query: 635  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
             L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A 
Sbjct: 1026 HLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQ 1085

Query: 695  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 754
            ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG +
Sbjct: 1086 VYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVA 1145

Query: 755  HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 814
             FLKERLF+ SDAYR+HVC+ CGL AIANLKK +FECR CKNKT   Q++IPYA KLLFQ
Sbjct: 1146 AFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTACSQLYIPYAAKLLFQ 1205

Query: 815  ELMAMAIAPRMLT 827
            EL +M IA R+ T
Sbjct: 1206 ELQSMNIAARLYT 1218


>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1220

 Score = 1192 bits (3085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/851 (67%), Positives = 677/851 (79%), Gaps = 25/851 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 363  MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 422

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 423  LFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 482

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 483  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 542

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 543  ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTSP-CTKVFVNGVWMGVHRDPANLVKT 601

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            +++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL+ KR I  L    
Sbjct: 602  IKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGS 661

Query: 300  SPE--DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA----- 345
              E  +  W  L+  G IE +D EEEET MISMT  DL  +RL       H  +      
Sbjct: 662  DDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDPA 721

Query: 346  -------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                   +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM KQAMGIY+TN+ 
Sbjct: 722  ARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTNFL 781

Query: 399  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 782  IRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 841

Query: 459  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
            DRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V 
Sbjct: 842  DRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVR 901

Query: 519  GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
            GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVKV
Sbjct: 902  GEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKV 961

Query: 577  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
            RVR+ RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGI PD+I+NPHAIPSRMTIG L
Sbjct: 962  RVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHL 1021

Query: 637  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
            +EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A I+
Sbjct: 1022 VECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIY 1081

Query: 697  LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
            LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + F
Sbjct: 1082 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGF 1141

Query: 757  LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
            LKERLF+ SDAYR+HVC+ CGL AIANLKK +FECR CKNKT   Q++IPYA KLLFQEL
Sbjct: 1142 LKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQIYIPYAAKLLFQEL 1201

Query: 817  MAMAIAPRMLT 827
             +M IA R+ T
Sbjct: 1202 QSMNIAARLYT 1212


>gi|67810558|gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
          Length = 670

 Score = 1192 bits (3085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/669 (82%), Positives = 613/669 (91%), Gaps = 1/669 (0%)

Query: 167 TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 226
           TPEGQA GLVKNLALM YITVGS+A PIL+FLEEW  EN EEISPA+IP ATKIFVNGCW
Sbjct: 2   TPEGQAVGLVKNLALMTYITVGSSANPILDFLEEWTMENLEEISPALIPTATKIFVNGCW 61

Query: 227 VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 286
           VG+HRDPEML++TLR+LRR+++V +EV +VRD+RL ELR+YTDYGRCSRPLFIV+ QRLL
Sbjct: 62  VGVHRDPEMLIRTLRKLRRQLNVKSEVSMVRDVRLNELRLYTDYGRCSRPLFIVKNQRLL 121

Query: 287 IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 346
           IKK DI ALQQ+E     GWH L+AKG IEY+DT EEETTMI+MTIND+V AR +PE AY
Sbjct: 122 IKKEDIDALQQKEI-TGVGWHQLIAKGIIEYVDTMEEETTMIAMTINDVVSARANPETAY 180

Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
           +DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY
Sbjct: 181 SDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 240

Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
           +LYYPQKPLVTTRAMEHLHFR+LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF RS+
Sbjct: 241 ILYYPQKPLVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFHRSI 300

Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
           F+RSYRDEEKK GTL KE+F +P+R  T GMRHGSYDKLD DG+APPGTRV+GEDVIIGK
Sbjct: 301 FYRSYRDEEKKQGTLTKEEFEKPNRDITSGMRHGSYDKLDSDGIAPPGTRVAGEDVIIGK 360

Query: 527 TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
           T P+ QD++  QA R+T+RD S +LRHSE+GM+DQV+LT N DG RFVK+RVRS+RIPQI
Sbjct: 361 TMPLPQDDSGTQAQRFTKRDQSTTLRHSESGMIDQVILTINNDGFRFVKIRVRSIRIPQI 420

Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
           GDKF+SRHGQKGT+GMTYTQEDMP++ EGI+PD++VNPHAIPSRMTIG LIEC+MGKVAA
Sbjct: 421 GDKFASRHGQKGTIGMTYTQEDMPFSQEGISPDLVVNPHAIPSRMTIGHLIECLMGKVAA 480

Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
            MGKEGDATPFTDVTVD+IS+ALH CGYQMRGFE MYNGHTGR+L A IFLGPTYYQRLK
Sbjct: 481 LMGKEGDATPFTDVTVDSISRALHSCGYQMRGFEVMYNGHTGRKLQAHIFLGPTYYQRLK 540

Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
           HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSD
Sbjct: 541 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSD 600

Query: 767 AYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
           AYRVHVCEHCGLIA ANLKK+ FECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRM+
Sbjct: 601 AYRVHVCEHCGLIANANLKKSFFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMM 660

Query: 827 TKEDTKQSK 835
           T++  K  +
Sbjct: 661 TRDLPKSKR 669


>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
          Length = 807

 Score = 1192 bits (3084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/811 (70%), Positives = 666/811 (82%), Gaps = 10/811 (1%)

Query: 22  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 81
           ++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK +D GK
Sbjct: 1   MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK 60

Query: 82  DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 140
           D NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLNS
Sbjct: 61  DFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS 120

Query: 141 PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 200
           PIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEE
Sbjct: 121 PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE 180

Query: 201 WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVVRDI 259
           W  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D+  +EV ++RDI
Sbjct: 181 WSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDI 240

Query: 260 RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 319
           R +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G +EYID
Sbjct: 241 REREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYID 299

Query: 320 TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           T EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 300 TLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 355

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAI
Sbjct: 356 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 415

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           A Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R    GMRH
Sbjct: 416 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRH 475

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETG 557
             YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  LR SETG
Sbjct: 476 AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETG 535

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGIT
Sbjct: 536 IVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGIT 595

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQM 676
           PDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L   GY +
Sbjct: 596 PDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHL 655

Query: 677 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 736
           RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDG
Sbjct: 656 RGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDG 715

Query: 737 GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN 796
           GLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++ECRGC+N
Sbjct: 716 GLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRN 775

Query: 797 KTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
           KT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 776 KTQISLVRMPYACKLLFQELMSMSIAPRMMS 806


>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
 gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
          Length = 1206

 Score = 1191 bits (3082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/853 (66%), Positives = 672/853 (78%), Gaps = 25/853 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+GT +F ET+K Y+ GY++HRL+L ALGRR EDDRDHY NKRLDL GPL+ GLFR+
Sbjct: 351  LLPHLGTEEFMETRKGYFVGYMVHRLMLVALGRRPEDDRDHYANKRLDLGGPLMAGLFRL 410

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKL +++R + Q+ VD GK++N+  AI  K IT GLKYSLATGNWG+    G RAGVS
Sbjct: 411  LFRKLCKELRMHAQRMVDAGKEINVLSAINEKIITRGLKYSLATGNWGEQGKQGIRAGVS 470

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVL RLTYASTLSHLRR+NSPIGREGKLAKPRQLHNS WGM CPAETPEGQA GLVKN+A
Sbjct: 471  QVLARLTYASTLSHLRRVNSPIGREGKLAKPRQLHNSLWGMFCPAETPEGQAVGLVKNMA 530

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YITVG+ + P++  LEE+ TE  +E++PA I  ATK+F+NG W+GI RDP  L+K L
Sbjct: 531  LMCYITVGTPSLPVVAHLEEFNTEALDEVTPADIAAATKVFINGVWLGIQRDPTALIKNL 590

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL-QQRE 299
            R +RR+V  +TEV ++ D  LKELRI+TDYGR SRPL+IVE  RLL+ K  I  L     
Sbjct: 591  RAMRRQVAFSTEVSIIYDGPLKELRIFTDYGRTSRPLYIVEDNRLLVTKNHIRRLISPLP 650

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
              E+  W  LV  G +EYID EEEETTMI+MTI DL  AR     A   TYTHCEIHP++
Sbjct: 651  DEEEYAWPQLVQDGLVEYIDAEEEETTMIAMTIADLRNAR-EAGSATGTTYTHCEIHPAM 709

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TNYQ RMDT  +VLYYPQKPLV TR
Sbjct: 710  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTR 769

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            AM++L FR+LPAGINAIVAI CYSGYNQEDS+++N SSIDRGF RS+F+R+Y++EEKK G
Sbjct: 770  AMDYLKFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSIFYRAYKEEEKKAG 829

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
            +L +E+   PD   T  M+HG+YDKLD DGL PPGTRVSGED+I GKT  +  D+  G  
Sbjct: 830  SLSREEIEAPDPVVTAKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLP-DDPTGAV 888

Query: 540  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
             R+T++D S++LR  E G++DQV+LTTN +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT
Sbjct: 889  QRFTKKDASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGT 948

Query: 600  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
             G+TYT EDMP++ EGI PDIIVNPHAIPSRMTIG L+E +M KVAA MG EGDATPFT 
Sbjct: 949  CGITYTMEDMPFSAEGIVPDIIVNPHAIPSRMTIGHLVEALMSKVAALMGSEGDATPFTK 1008

Query: 660  VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 719
            VTVDN+S+ LH  GYQ RG+E MYNGHTGR+L A IFL PTYYQRLKHMVD KIHSRGRG
Sbjct: 1009 VTVDNVSQMLHDLGYQRRGWEVMYNGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRG 1068

Query: 720  PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
            PVQ+LTRQPAEGR+RDGGLRFGEMERDC+I+HGA+ FLKERLFDQSDAYRVHVCE  GLI
Sbjct: 1069 PVQVLTRQPAEGRARDGGLRFGEMERDCIISHGAAAFLKERLFDQSDAYRVHVCERSGLI 1128

Query: 780  AIANLKKNSFECRGCKNKTDIVQ----------------------VHIPYACKLLFQELM 817
            A+ANLKK  F     K+ ++I Q                      V++PYACKLLFQELM
Sbjct: 1129 AVANLKKQQFTSTIYKDGSNIYQASYRRNPRWAAGGGYKRMWNKDVYVPYACKLLFQELM 1188

Query: 818  AMAIAPRMLTKED 830
            AM IAPRM  + D
Sbjct: 1189 AMCIAPRMQFERD 1201


>gi|390604597|gb|EIN13988.1| DNA-dependent RNA polymerase II second largest subunit [Punctularia
            strigosozonata HHB-11173 SS5]
          Length = 1247

 Score = 1190 bits (3079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/868 (66%), Positives = 681/868 (78%), Gaps = 42/868 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 370  MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 429

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKC++ GK  NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 430  LFRKLTKDVYRYLQKCIETGKQFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGV 489

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 490  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 549

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 550  SLMATISVGSISAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPLNLVKT 608

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            +++LRR+ D++ E  VVRDIR +ELRI TD GR  RPLFIVE Q+L++KK  I  L +  
Sbjct: 609  IKKLRRKDDISPETSVVRDIRERELRISTDAGRVCRPLFIVENQQLVLKKSHIEKLHKHN 668

Query: 300  SP---EDGG----------------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 340
            +    +D G                + +LV +G IEY+D EEEET MI MT  DL  ARL
Sbjct: 669  TEPVLDDAGAPTFDENGKQRFFQYQFDELVKEGVIEYLDAEEEETVMICMTPEDLENARL 728

Query: 341  H-----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  P +                A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 729  KQQGHDPSQDDPDFDPAARIKTGTQAHLWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 788

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 789  QSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIMC 848

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRS++FRSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 849  YSGYNQEDSVIMNQSSIDRGLFRSMYFRSYMDMEKKSGIQQLEEFEKPTRDTTLRMKHGT 908

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G V
Sbjct: 909  YDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTRRDVSTPLKSTEQGTV 968

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL+TTN++G +FVKVR+RS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 969  DQVLITTNSEGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPD 1028

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            II+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG 
Sbjct: 1029 IIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQRGYQSRGL 1088

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MY+GHTGR+L A I+LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLR
Sbjct: 1089 EVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 1148

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 799
            FGEMERDCMI+HG + FLKERLF+ SDAYR+HVC+ CGL AIANLKK +FECR CKNKT+
Sbjct: 1149 FGEMERDCMISHGIAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTE 1208

Query: 800  IVQVHIPYACKLLFQELMAMAIAPRMLT 827
              Q++IPYA KLLFQEL +M IA R+ T
Sbjct: 1209 CSQLYIPYAAKLLFQELQSMNIAARLYT 1236


>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
 gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
          Length = 1222

 Score = 1190 bits (3078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/850 (66%), Positives = 680/850 (80%), Gaps = 24/850 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 366  MLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 425

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 426  LFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 485

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 486  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 545

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 546  ALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANLVKT 604

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDI--IALQQ 297
            +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L+++K+ +  +A  +
Sbjct: 605  IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKKHVRWLANSE 664

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE-------EAY---- 346
             +  E+  W +L+  G +E +D EEEET MI MT  DL  +R   E       E Y    
Sbjct: 665  NDDGEEWKWENLIKSGIVELLDAEEEETVMICMTPEDLEVSRRQSEGMEIQDHEDYDPAA 724

Query: 347  -------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 399
                   A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN+  
Sbjct: 725  RLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLI 784

Query: 400  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 459
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG N+IVAI CYSGYNQEDSVI+NQSSID
Sbjct: 785  RMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNSIVAILCYSGYNQEDSVIVNQSSID 844

Query: 460  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 519
            RG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT V+G
Sbjct: 845  RGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIAPGTNVTG 904

Query: 520  EDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 577
            ED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVKVR
Sbjct: 905  EDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVR 964

Query: 578  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 637
            VRS RIPQIGDKF+SRHGQKGT+G+ Y QEDMP+T EGI PD+I+NPHAIPSRMTIG L+
Sbjct: 965  VRSTRIPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLV 1024

Query: 638  ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 697
            EC++ KVA  +G EGDATPFTD+TV+ +S  L + GYQ RG E MY+GHTGR+L A ++L
Sbjct: 1025 ECLLSKVATLIGNEGDATPFTDLTVEGVSTFLRQRGYQSRGLEVMYHGHTGRKLQAQVYL 1084

Query: 698  GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFL 757
            GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FL
Sbjct: 1085 GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFL 1144

Query: 758  KERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 817
            KERLFD SDAYR+HVC+ CGL AIANLKK SFECR CKNKT   Q++IPYA KLLFQEL 
Sbjct: 1145 KERLFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQ 1204

Query: 818  AMAIAPRMLT 827
            +M IA R+ T
Sbjct: 1205 SMNIAARLYT 1214


>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
 gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
          Length = 1210

 Score = 1189 bits (3076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/862 (64%), Positives = 681/862 (79%), Gaps = 34/862 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+ T +  ET+KA++ GY++HR+LLCAL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 346  MLPHITTLEGFETRKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRM 405

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+K+TRDV  Y+QKCV+  ++ NL  A+K+ TIT+GL+YSLATGNWG Q      R GV
Sbjct: 406  LFKKMTRDVYKYMQKCVETNREFNLTLAVKSNTITNGLRYSLATGNWGDQKRGLANRVGV 465

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 466  SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 525

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS + PI+EFLEEWG E+ E+ +P+  P ATK+FVNG W+G+HRDP  L +T
Sbjct: 526  SLMSYVSVGSPSAPIIEFLEEWGMESLEDYNPSASPNATKVFVNGIWLGVHRDPVHLTET 585

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            LR LRRR+D++ EV +VRDIR KELR++TD GR  RPLFIV+       K  L I+K  I
Sbjct: 586  LRSLRRRLDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNDSNSDTKGELCIRKEHI 645

Query: 293  IALQQRESPED------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL----------- 335
              L +     D       GW  L+A G IEY+D EEEET MI+M+ +DL           
Sbjct: 646  QQLLEDRDRFDINAEQRFGWSSLIASGLIEYLDAEEEETVMIAMSPDDLELSRQANAGYE 705

Query: 336  VQARLHPEE-------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
            +Q  L P +        +   +THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 706  MQEELDPAKRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQ 765

Query: 389  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
            AMGIY+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQE
Sbjct: 766  AMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQE 825

Query: 449  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
            DS+IMNQSSIDRG FRS+F+R+Y D+EKK+G  V E+F RP RS T+ M+HG+YDKL+DD
Sbjct: 826  DSIIMNQSSIDRGLFRSIFYRTYMDQEKKIGMTVMEEFERPTRSTTLRMKHGTYDKLEDD 885

Query: 509  GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTT 566
            GL  PGTRVSG+D+IIGKT P+  D E  GQ ++ + +RD S  LR +E+G+VDQV++TT
Sbjct: 886  GLIAPGTRVSGDDIIIGKTAPVPPDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTT 945

Query: 567  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
            N +GL+FVKVR+RS RIPQIGDKF+SRHGQKGT+GMTY  EDMP++ +GI PDII+NPHA
Sbjct: 946  NQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHA 1005

Query: 627  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
            IPSRMT+  L+EC + KV+A  G EGDATPFT+VTV+ +SK L   G+  RGFE MY+GH
Sbjct: 1006 IPSRMTVAHLVECQLSKVSALSGLEGDATPFTEVTVEAVSKLLRSHGFHSRGFEVMYHGH 1065

Query: 687  TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
            TGR+L A +FLGPTYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERD
Sbjct: 1066 TGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1125

Query: 747  CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 806
            C I+HG S  L+ERLFD SDAYRV VC+ CGLIAIA+ KKNS+ECR C+N+T   Q+++P
Sbjct: 1126 CQISHGCSSVLRERLFDCSDAYRVIVCDLCGLIAIASFKKNSYECRSCQNRTRFSQIYLP 1185

Query: 807  YACKLLFQELMAMAIAPRMLTK 828
            YA KLLFQELM+M IAPR+ TK
Sbjct: 1186 YAAKLLFQELMSMNIAPRLFTK 1207


>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
            972h-]
 gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 138 kDa
            polypeptide
 gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
          Length = 1210

 Score = 1186 bits (3068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/862 (65%), Positives = 681/862 (79%), Gaps = 34/862 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+ T +  ET+KA++ GY+IHR+LLCAL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 346  LLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRM 405

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRK+TRDV  Y+QKCV+  ++ NL  A+K+  IT+GL+YSLATGNWG Q  +   R GV
Sbjct: 406  LFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGV 465

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 466  SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 525

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS + PI+EFLEEWG E  E+ +P+  P ATK+FVNG W+G+HRDP  L +T
Sbjct: 526  SLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTET 585

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            LR LRRR+D++ EV +VRDIR KELR++TD GR  RPLFIV+          L I+K  I
Sbjct: 586  LRSLRRRLDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHI 645

Query: 293  IALQQRES-----PEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------- 335
              L + +      PE   GW  LV+ G IEY+D EEEET MI+M+  DL           
Sbjct: 646  QQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYE 705

Query: 336  VQARLHPEE-------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
            V+  L P +        +   +THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 706  VKEELDPAQRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQ 765

Query: 389  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
            AMG+Y+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQE
Sbjct: 766  AMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQE 825

Query: 449  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
            DS+IMNQ+SIDRG FRS+F+R+Y D+EKK+G  V E+F RP RS T+ M+HG+YDKL+DD
Sbjct: 826  DSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDD 885

Query: 509  GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTT 566
            GL  PGTRVSGED+IIGKT PI  D E  GQ ++ + +RD S  LR +E+G+VDQV++TT
Sbjct: 886  GLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTT 945

Query: 567  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
            N +GL+FVKVR+RS RIPQIGDKF+SRHGQKGT+GMTY  EDMP++ +GI PDII+NPHA
Sbjct: 946  NQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHA 1005

Query: 627  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
            IPSRMT+  L+EC + KV+A  G EGDATPFTDVTV+ +SK L   G+Q RGFE MY+GH
Sbjct: 1006 IPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGH 1065

Query: 687  TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
            TGR+L A +FLGPTYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERD
Sbjct: 1066 TGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1125

Query: 747  CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 806
            C I+HG S  L+ERLFD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T   QV++P
Sbjct: 1126 CQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLP 1185

Query: 807  YACKLLFQELMAMAIAPRMLTK 828
            YA KLLFQELM+M IAPR+ TK
Sbjct: 1186 YAAKLLFQELMSMNIAPRLFTK 1207


>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
            98AG31]
          Length = 1257

 Score = 1186 bits (3068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/862 (66%), Positives = 675/862 (78%), Gaps = 37/862 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   +  + KKAY+FGY++HRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 382  MLPHISMSEGQQGKKAYFFGYMVHRLLLAALERRDLDDRDHFGKKRLDLAGPLLAGLFRM 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  ++QKCV+  K  NL  A+K+ TIT+GLKYSLATGNWG Q  A   RAGV
Sbjct: 442  LFRKLTKDVYRHLQKCVEMQKPFNLNTAVKSNTITNGLKYSLATGNWGDQKKAMQARAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHNS WGM+CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS + PI+EFLEEWG E+ +E S A +   TK+FVNG W G+HR P  L+ T
Sbjct: 562  ALMSYISVGSPSAPIVEFLEEWGMESLDEFS-ADMATGTKVFVNGVWQGVHRSPAELLDT 620

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            ++RLRR  D+  EV VVRD+R +ELR++TD GR  RPLFIVE Q+LL+ K  +  L    
Sbjct: 621  IKRLRRCGDIEPEVSVVRDVRERELRVFTDGGRVCRPLFIVENQQLLLTKDHVEWLSNGY 680

Query: 300  S----------PEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
                       PED G    W  LVAKG +EY+D EEEET MI MT  DL Q+R + E  
Sbjct: 681  VTGTEDPNGIVPEDEGQPFGWSQLVAKGIVEYLDAEEEETVMICMTPEDLEQSREYQETG 740

Query: 346  -------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
                               Y+ T+THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMG
Sbjct: 741  QVPKEVFDPAARLKGNTSMYSHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMG 800

Query: 387  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
            KQAMG+Y+TN++ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYN
Sbjct: 801  KQAMGVYLTNFRMRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYN 860

Query: 447  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
            QEDSVIMNQSSIDRG FRS ++RSY D+EKK G L  E+F +P R NT+ ++HG+Y+KLD
Sbjct: 861  QEDSVIMNQSSIDRGLFRSFYYRSYMDQEKKAGALQMEEFEKPSRENTLRLKHGTYEKLD 920

Query: 507  DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLL 564
            DDG+  PGTRVSG+D+IIGKT PI  D E  GQ  + +T+RD S+ L+ +E G++DQVL+
Sbjct: 921  DDGIITPGTRVSGDDIIIGKTAPIPPDSEELGQRMKTHTKRDVSMPLKSTENGIIDQVLI 980

Query: 565  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 624
            TTN DGL+FVKVR+RS RIP+ GDKF+SRHGQKGTVG+ Y QEDMP+T EGI PDII+NP
Sbjct: 981  TTNQDGLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILYRQEDMPFTSEGICPDIIINP 1040

Query: 625  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 684
            HAIPSRMTIG L+EC++ KV+   G EGDATPF++VTV+ IS  L   GYQ RG E MYN
Sbjct: 1041 HAIPSRMTIGHLVECLLSKVSTITGNEGDATPFSEVTVEAISSLLKDNGYQSRGLEIMYN 1100

Query: 685  GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 744
            GHTGR+L A  +LGPTYYQRLKHMV+DKIHSR RGPVQILTRQP EGRSRDGGLRFGEME
Sbjct: 1101 GHTGRKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEME 1160

Query: 745  RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVH 804
            RDCMI+HG + FLKER+FD SDAYRVHVC+ CG++AIANLKK SFECR C+NKT I QV+
Sbjct: 1161 RDCMISHGIAGFLKERMFDVSDAYRVHVCDICGMVAIANLKKQSFECRACRNKTAISQVY 1220

Query: 805  IPYACKLLFQELMAMAIAPRML 826
            IPYA KLLFQEL +M IA R +
Sbjct: 1221 IPYAAKLLFQELQSMNIASRFV 1242


>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1277

 Score = 1185 bits (3066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/840 (66%), Positives = 662/840 (78%), Gaps = 20/840 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHVG G   E KK ++ GY++H+LL+C+LGR  EDDRDHYG KRLDLAG LL GLFR 
Sbjct: 440  FLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQ 499

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT++VR Y+Q C+D G    +  AIK++ IT GLKYSLATGNWG    A T+AGVS
Sbjct: 500  LFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTA-TKAGVS 558

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYAS LSHLRRLN+P+GREGK AKPRQLHN+ WG +CPAETPEGQA GLVKNLA
Sbjct: 559  QVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLA 618

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVK 238
            LM YI+VG +  PILEFLEEW  EN +EI+P +I Q   TK+FVNG WVG+HRDP  LV+
Sbjct: 619  LMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQ 678

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            TL   RR +D++ EV VVRDI+ +ELR+YTD GR  RPLF+VE  RL I+K+ I  L   
Sbjct: 679  TLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHD- 737

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
                + GW +L+ +G +EYIDTEEEETTM++M   DL ++       Y+ TYTHCEIHPS
Sbjct: 738  ---PNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEES-----GGYSSTYTHCEIHPS 789

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQ RMDTLA+VL+YP+KPLVTT
Sbjct: 790  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPEKPLVTT 849

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK- 477
            RAMEHLHFR+LP+G N IV I  YSGYNQEDS+IMNQS++DRG FRS FFR+  D+EK  
Sbjct: 850  RAMEHLHFRELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQEKAG 909

Query: 478  -----MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 532
                 M  L  E F RP R NT GM+HG+YDKL++DGL  PGTRVSG DV+IGKTTP+  
Sbjct: 910  RGMGDMAVLSAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVSGTDVLIGKTTPLGG 969

Query: 533  DEAQGQASRY--TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
              A         +++D S  +R  E G+VD+V+LTTN +G +F KVR+R+VR+PQIGDKF
Sbjct: 970  GVAGVTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKVRIRNVRVPQIGDKF 1029

Query: 591  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
            +SRHGQKGT+GMTY QEDMPW+++GI PDIIVNPHAIPSRMTI QLIEC++GKV    G 
Sbjct: 1030 ASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGT 1089

Query: 651  EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
            EGDATPFTDVTV N+S  LHK G+Q  G E MY+GHTGR L   +FLGPT+YQRLKH+VD
Sbjct: 1090 EGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVD 1149

Query: 711  DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 770
            DKIHSR RGPV  LTRQP EGR RDGGLR GEMERDC+I+HG ++FL++RLF  SDAYRV
Sbjct: 1150 DKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRV 1209

Query: 771  HVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKED 830
            HVC+ CGLIA+ANL+K SFECRGCK K+D+ Q+H+PYACKLLFQELMAM IAPRM  + D
Sbjct: 1210 HVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMFVRAD 1269


>gi|406604825|emb|CCH43700.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
          Length = 1241

 Score = 1185 bits (3066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/859 (65%), Positives = 676/859 (78%), Gaps = 32/859 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 377  FLPHITQQEGFESRKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLANLFRI 436

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLTRD+  Y+Q+ V+   D NL+ A+KA TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 437  LFKKLTRDIYRYMQRSVETDTDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGV 496

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 497  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 556

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VGS + PI+ FLEEWG E  E+  P   P AT+IFVNG W GIHRDP  L+ T
Sbjct: 557  SLMSCISVGSGSDPIIYFLEEWGMEPLEDYLPHQAPDATRIFVNGVWHGIHRDPAKLIST 616

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            +R LRRR +++ EV ++RDIR KE +++TD GR  RPLF+VE       + L +K+  + 
Sbjct: 617  MRNLRRRGEISPEVSIIRDIREKEFKVFTDAGRVYRPLFVVEDNEETGAKELALKREHVQ 676

Query: 294  ALQQRE-------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL----------- 335
             +   E         E   W+ LV  G +EY+D EEEET MI+M+  DL           
Sbjct: 677  KIVDTEYGDYEEMEEEPFVWNSLVTNGIVEYVDAEEEETIMIAMSPEDLNPEKYGTQNYD 736

Query: 336  ---VQARLHP-EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                  RL P    +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 737  DPDPNKRLKPGTNKHAQTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 796

Query: 392  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
            +++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 797  VFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSM 856

Query: 452  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
            IMNQSSIDRG FRSLFFRSY D+EK++G  V E F +P+RSNT+ ++HG+Y+KLDDDGL 
Sbjct: 857  IMNQSSIDRGLFRSLFFRSYMDQEKRVGMTVVEQFEKPNRSNTLRLKHGTYEKLDDDGLI 916

Query: 512  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
             PG RVSGED+IIGKTTPI  D E  GQ + Y ++RD S  LR +E G+VDQVL+TTN +
Sbjct: 917  APGVRVSGEDIIIGKTTPIQADSEELGQRTVYHSKRDASTPLRSTENGIVDQVLITTNQE 976

Query: 570  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
            GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 977  GLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTREGIVPDLIINPHAIPS 1036

Query: 630  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
            RMT+  LIEC++ KV+A  G EGDA+PFTDVTVD ISK L + GYQ RGFE MYNGHTG+
Sbjct: 1037 RMTVAHLIECLLSKVSALSGLEGDASPFTDVTVDAISKLLREHGYQSRGFEVMYNGHTGK 1096

Query: 690  RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
            +L A IF GPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1097 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMI 1156

Query: 750  AHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYA 808
            AHGA+ F+KERL + SDA+RVHVC  CGL++ IA LK N FECRGCKNK DI Q+HIPYA
Sbjct: 1157 AHGAAAFMKERLMEASDAFRVHVCGVCGLMSVIAKLKHNQFECRGCKNKIDIYQIHIPYA 1216

Query: 809  CKLLFQELMAMAIAPRMLT 827
             KLLFQELMAM IAPR+ T
Sbjct: 1217 AKLLFQELMAMNIAPRLYT 1235


>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces pombe]
          Length = 1210

 Score = 1185 bits (3065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/862 (65%), Positives = 680/862 (78%), Gaps = 34/862 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+ T +  ET+KA++ GY+IHR+LLCAL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 346  LLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRM 405

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRK+TRDV  Y+QKCV+  ++ NL  A+K+  IT+GL+YSLATGNWG Q  +   R GV
Sbjct: 406  LFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGV 465

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 466  SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 525

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS + PI+EFLEEWG E  E+ +P+  P ATK+FVNG W+G+HRDP  L +T
Sbjct: 526  SLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTET 585

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            LR LRRR+D++ EV +VRDIR KELR++TD GR  RPLFIV+          L I+K  I
Sbjct: 586  LRSLRRRLDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHI 645

Query: 293  IALQQRES-----PEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------- 335
              L + +      PE   GW  LV+ G IEY+D EEEET MI+M+  DL           
Sbjct: 646  QQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYE 705

Query: 336  VQARLHPEE-------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
            V+  L P +        +    THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 706  VKEELDPAQRVKPAPNPHVHARTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQ 765

Query: 389  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
            AMG+Y+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQE
Sbjct: 766  AMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQE 825

Query: 449  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
            DS+IMNQ+SIDRG FRS+F+R+Y D+EKK+G  V E+F RP RS T+ M+HG+YDKL+DD
Sbjct: 826  DSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDD 885

Query: 509  GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTT 566
            GL  PGTRVSGED+IIGKT PI  D E  GQ ++ + +RD S  LR +E+G+VDQV++TT
Sbjct: 886  GLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTT 945

Query: 567  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
            N +GL+FVKVR+RS RIPQIGDKF+SRHGQKGT+GMTY  EDMP++ +GI PDII+NPHA
Sbjct: 946  NQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHA 1005

Query: 627  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
            IPSRMT+  L+EC + KV+A  G EGDATPFTDVTV+ +SK L   G+Q RGFE MY+GH
Sbjct: 1006 IPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGH 1065

Query: 687  TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
            TGR+L A +FLGPTYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERD
Sbjct: 1066 TGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1125

Query: 747  CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 806
            C I+HG S  L+ERLFD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T   QV++P
Sbjct: 1126 CQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLP 1185

Query: 807  YACKLLFQELMAMAIAPRMLTK 828
            YA KLLFQELM+M IAPR+ TK
Sbjct: 1186 YAAKLLFQELMSMNIAPRLFTK 1207


>gi|427798029|gb|JAA64466.1| Putative rna polymerase i second largest subunit, partial
            [Rhipicephalus pulchellus]
          Length = 1149

 Score = 1184 bits (3064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/808 (70%), Positives = 657/808 (81%), Gaps = 11/808 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAYY GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPL+  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT-ITSGLKYSLATGNWG-QANAAGTRAG 118
            LFR LT++VR Y QK +D GKD NL+ AIK    IT GL+YSLATGNWG Q  A   RAG
Sbjct: 407  LFRNLTKEVRMYAQKFIDRGKDFNLELAIKTXXXITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            VSQVLNRLTYASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKN
Sbjct: 467  VSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKN 526

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM YI+VGS   PILEFLEEW  EN EEI+P+ I +ATKIFVNGCWVGIHRDP+ L+ 
Sbjct: 527  LALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRDPDQLMN 586

Query: 239  TLRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 297
            TLR+LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+LL+K+R I  L+ 
Sbjct: 587  TLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLKRRHIDNLKD 646

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
            RE   +  W DLVA G +EYIDT EEET M+SMT +DL    L    AY  TYTHCEIHP
Sbjct: 647  REY-NNYSWQDLVASGVVEYIDTLEEETVMLSMTPDDLQDKGL----AYCSTYTHCEIHP 701

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            S+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDTLA+VLYYP KPL T
Sbjct: 702  SMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTT 761

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            TR+ME+L FR+LPAGIN+IVAI  Y+GYNQEDS+I+N S++DRGFFRS+F+RSY+D E K
Sbjct: 762  TRSMEYLRFRELPAGINSIVAIMSYTGYNQEDSIIVNASAVDRGFFRSVFYRSYKDSECK 821

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEA 535
                 +E F +P R    GMR+  YDKLDDDG+  PGTRVSG+DVIIGKT   P + D+ 
Sbjct: 822  RVGDQEEQFEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDL 881

Query: 536  QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
            +    R+T+RD S  LR+SETG+VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 882  ESTNRRFTKRDASTFLRNSETGIVDQVMLTVNAEGYKFCKIRVRSVRIPQIGDKFASRHG 941

Query: 596  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
            QKGT G+TY QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDAT
Sbjct: 942  QKGTCGITYRQEDMPFTAEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDAT 1001

Query: 656  PFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
            PF D V V  IS  L + GY +RG E M+NGHTGR++ A IFLGPTYYQRLKHMVDDKIH
Sbjct: 1002 PFNDSVNVQKISNLLQEYGYHLRGNEVMFNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIH 1061

Query: 715  SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 774
            SR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR H+C 
Sbjct: 1062 SRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICN 1121

Query: 775  HCGLIAIANLKKNSFECRGCKNKTDIVQ 802
             CGL+AIANL+ N+FEC+GC+NKT I Q
Sbjct: 1122 LCGLLAIANLRNNTFECKGCRNKTQISQ 1149


>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
          Length = 1173

 Score = 1184 bits (3064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/832 (67%), Positives = 660/832 (79%), Gaps = 13/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR 
Sbjct: 349  MLPHVGISDFCETKKAYFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRA 408

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR   QK ++   D  L   +K  TIT GL YSLATGNWG Q  A  +RAGV
Sbjct: 409  LFKNLLKEVRLTAQKYINKNGDFILDACVKTSTITRGLAYSLATGNWGDQKKAHQSRAGV 468

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNL
Sbjct: 469  SQVLNRLTYTATLSHLRRCNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNL 528

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EE++P+ I  ATKIFVNG WVGIHRDPE L+ T
Sbjct: 529  ALMAYISVGSLPEPILEFLEEWSMENLEEVAPSAIADATKIFVNGAWVGIHRDPEQLMST 588

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            L++LRR +D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L++KK+ I  L  +
Sbjct: 589  LKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLVLKKKHIDQL--K 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            ++ ++  W DLVA G +E ID  EEET M++M   DL          Y DTYTHCEIHP+
Sbjct: 647  DTNDNYAWSDLVAGGVVELIDAMEEETVMLAMMPEDLKAG------GYCDTYTHCEIHPA 700

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 701  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTT 760

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L F +LPAGINAIVAI  Y+GYNQEDSVIMNQS IDRG FRS+F+RSYRD+E  +
Sbjct: 761  RSMEYLRFNELPAGINAIVAILSYTGYNQEDSVIMNQSGIDRGLFRSVFYRSYRDQEANL 820

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P  +D+ +
Sbjct: 821  DNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDVEDDLE 880

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                +YT+RD S  LR SETG+VDQV+LT N DG +FVK+RVRSVR+PQIGDKF+SRHGQ
Sbjct: 881  ANTKKYTKRDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQ 940

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT+G+ Y QEDMP+T EGITPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATP
Sbjct: 941  KGTMGIMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATP 1000

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTG +LT  +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1001 FNDTVNVQKISNLLSEYGYHLRGNEIMYNGHTGHKLTTQVFLGPTYYQRLKHMVDDKIHS 1060

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQ++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC +
Sbjct: 1061 RARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYVCNN 1120

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLI IANL+ N+FEC+ C+NKT +  + IPYACKLLFQELM+M+IAPR++ 
Sbjct: 1121 CGLIVIANLRTNTFECKACRNKTQVSAIRIPYACKLLFQELMSMSIAPRLMV 1172


>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1198

 Score = 1183 bits (3060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/854 (65%), Positives = 676/854 (79%), Gaps = 29/854 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV T +  ETKKAY+FGY+IHRL+L  L RR  DDRDH+G KRLDL GPLL  LFRM
Sbjct: 338  MLPHVATNEGSETKKAYFFGYMIHRLMLARLERRELDDRDHFGKKRLDLGGPLLASLFRM 397

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+ NL  A+KA TIT+GLKYSLATGNWG Q      RAGV
Sbjct: 398  LFRKLTKDVYRYMQKCVETHKEFNLNQAVKANTITNGLKYSLATGNWGDQKKFMQARAGV 457

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 458  SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 517

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ++ GS++ PI +FL+EWG E  EE +P       K+FVNG W+G+HRDP  LVKT
Sbjct: 518  ALMANVSTGSSSAPIQDFLQEWGMEELEEFNPR--SNQVKVFVNGVWIGVHRDPTNLVKT 575

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV--EKQRLLIKKRDIIALQQ 297
            LR+LRR  D+  EV VVRD+R KE++++TD GR  RPLF+V  E Q+L I K  I  ++ 
Sbjct: 576  LRKLRREGDIQHEVSVVRDVREKEIKVFTDAGRVCRPLFLVDEETQQLEINKSHIAKIEA 635

Query: 298  RESPEDG------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--LHPEEAYAD- 348
              + ED        W  L++ G +E +D EEEET MI MT  +L  +R    P++   D 
Sbjct: 636  HTNGEDEDPDQPYNWAKLMSDGVMELLDAEEEETVMICMTPEELEHSRQGFIPQDEEFDP 695

Query: 349  -------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
                         T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ+AMGKQAMG+++T
Sbjct: 696  AARIKSASTLDTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQAAMGKQAMGVHLT 755

Query: 396  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
            N+Q RMDTL+ +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 756  NFQQRMDTLSNILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQ 815

Query: 456  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
            S+IDRG FRS+F+RSY D EKK+GT++ E+F +P R   + M+HG+YDK+++DGL  PGT
Sbjct: 816  SAIDRGLFRSIFYRSYMDTEKKVGTMLLEEFEKPTRETCLRMKHGTYDKIENDGLIAPGT 875

Query: 516  RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
             V+G+D+IIGKT PI  D E  GQ ++ +T+RD S  L+ +E G+VDQVL+TTNADGL+F
Sbjct: 876  AVTGDDIIIGKTAPIPPDSEELGQRTKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKF 935

Query: 574  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
             KVR+RS RIPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GITPD+I+NPHAIPSRMTI
Sbjct: 936  SKVRMRSTRIPQIGDKFASRHGQKGTIGITYRNEDMPFTSDGITPDLIINPHAIPSRMTI 995

Query: 634  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
            G L+EC++ KVA   G EGDATPFT+VTV++IS  LH+ GYQ RG E MYNGHTGR+L A
Sbjct: 996  GHLVECLLSKVATLQGSEGDATPFTEVTVESISSILHEKGYQKRGLEVMYNGHTGRKLQA 1055

Query: 694  MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 753
             +++GPTYYQRLKHMVDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDCMIAHG 
Sbjct: 1056 QVYIGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGV 1115

Query: 754  SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 813
            + FLKERLFD SDAYR+HVC+ CG+ AIANLKK +FECR C+NKTDI Q+H+PYA KLLF
Sbjct: 1116 AAFLKERLFDASDAYRLHVCDLCGMTAIANLKKQTFECRACRNKTDISQIHVPYAAKLLF 1175

Query: 814  QELMAMAIAPRMLT 827
            QEL +M I+PR+ +
Sbjct: 1176 QELQSMGISPRLYS 1189


>gi|344234576|gb|EGV66444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1233

 Score = 1182 bits (3057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/871 (64%), Positives = 679/871 (77%), Gaps = 43/871 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +   T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 355  LLPNITQEEGFATRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRD+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 415  LFRKLTRDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 474

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+++ PIL FLEEWG E  E+ SP+  P +T++FVNG WVG HRDP  LV+T
Sbjct: 535  SLMSCISVGTSSEPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPSSLVET 594

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRR+ D++ EV ++RDIR +E +I+TD GR  RPLFIV+       K  L++ K  +
Sbjct: 595  IRSLRRKGDISPEVSIIRDIREREFKIFTDAGRVYRPLFIVDDNPYSETKGELMLNKSHV 654

Query: 293  IALQQRE--------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--------- 335
              L   E          E  GW  LV  G IEY+D EEEET MI+MT  DL         
Sbjct: 655  KKLMDSEYDDYVYDDEQEAYGWSSLVRDGIIEYVDAEEEETIMIAMTPEDLESSKSTLSE 714

Query: 336  -VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
              Q  +  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 715  AQQKSMQMEEQEKDPAKRIKPTFSGNLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT 774

Query: 381  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
            YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIA
Sbjct: 775  YQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIA 834

Query: 441  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
            CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F RP RS+T+ ++HG
Sbjct: 835  CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFERPSRSDTLRLKHG 894

Query: 501  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
            +Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 895  TYEKLDDDGLITPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGI 954

Query: 559  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
            VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI P
Sbjct: 955  VDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPFTSQGIVP 1014

Query: 619  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
            D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RG
Sbjct: 1015 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEEVSKLLREHGYQSRG 1074

Query: 679  FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
            FE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGL
Sbjct: 1075 FEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGL 1134

Query: 739  RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNK 797
            RFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNK
Sbjct: 1135 RFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRACKNK 1194

Query: 798  TDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            T+I Q+HIPYA KLLFQELMAM I+PRM T+
Sbjct: 1195 TNIYQIHIPYAAKLLFQELMAMNISPRMYTE 1225


>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
 gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
          Length = 1142

 Score = 1180 bits (3052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/831 (67%), Positives = 658/831 (79%), Gaps = 40/831 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAYY GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPL+  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR LT++VR Y QK +D GKD NL+ AIK + IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFRNLTKEVRMYAQKFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTYASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I +ATKIFVNGCWVGIHRDP+ L+ T
Sbjct: 527  ALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRDPDQLMNT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+LL+K+R I +L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLKRRHIDSLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M+SMT +DL         AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLSMTPDDLQDKGF----AYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDTLA+VLYYP KPL TT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI  Y+GYNQEDS+I+N S++DRGFFRS+F+RSY+D E K 
Sbjct: 762  RSMEYLRFRELPAGINSIVAIMSYTGYNQEDSIIVNASAVDRGFFRSVFYRSYKDSECKR 821

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PGTRVSG+DVIIGKT   P + D+ +
Sbjct: 822  VGDQEEQFEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLE 881

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR+SETG+VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882  STNRRFTKRDASTFLRNSETGIVDQVMLTVNAEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+TY QEDMP+T +G+TPDII+NPHAIPSRMT                        
Sbjct: 942  KGTCGITYRQEDMPFTADGLTPDIIINPHAIPSRMT------------------------ 977

Query: 657  FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
                    IS  L + GY +RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR
Sbjct: 978  -------KISNLLQEYGYHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSR 1030

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
             RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR H+C  C
Sbjct: 1031 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLC 1090

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            GL+AIANL+ N+FEC+GC+NKT I Q+ +PYACKLLFQELM+M+IAPRM+ 
Sbjct: 1091 GLLAIANLRNNTFECKGCRNKTQISQIRLPYACKLLFQELMSMSIAPRMMV 1141


>gi|448117721|ref|XP_004203325.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
 gi|359384193|emb|CCE78897.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
          Length = 1233

 Score = 1179 bits (3051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/870 (64%), Positives = 681/870 (78%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 356  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 415

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+CV+N K+ N   A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 416  LFRKLTKDIYNYMQRCVENDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 475

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 476  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 535

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FLEEWG E  E+  P+  P+AT++FVNG WVG HR+P  LV+T
Sbjct: 536  SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPEATRVFVNGVWVGTHREPAHLVET 595

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRRR D++ EV +VRDIR +E +I+TD GR  RPLFIV+       K  L +KK  +
Sbjct: 596  MRNLRRRGDISPEVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKEHV 655

Query: 293  IALQQRESPE--------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----- 339
              L   E  E        +  W  L+  G +EY+D EEEET MI+MT  DL  +R     
Sbjct: 656  NKLLNAEYDEFSDEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAMTPEDLEASRSSLSE 715

Query: 340  -----LHPEEAYAD-------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                 L  EE  +D             T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 716  TQQKNLQLEEQESDPAKRIRPTFSGSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 775

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIAC
Sbjct: 776  QSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIAC 835

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 836  YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLKLKHGT 895

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
            Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+V
Sbjct: 896  YEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIV 955

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD
Sbjct: 956  DQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPD 1015

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVTV+ +SK L + GYQ RGF
Sbjct: 1016 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTVEAVSKLLREHGYQSRGF 1075

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTG++L A IF GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLR
Sbjct: 1076 EVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLR 1135

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT
Sbjct: 1136 FGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKT 1195

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            +I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1196 NIYQIHIPYAAKLLFQELMAMNISPRLYTE 1225


>gi|448120161|ref|XP_004203908.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
 gi|359384776|emb|CCE78311.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
          Length = 1233

 Score = 1179 bits (3049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/870 (64%), Positives = 681/870 (78%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 356  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 415

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+CV+N K+ N   A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 416  LFRKLTKDIYNYMQRCVENDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 475

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 476  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 535

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FLEEWG E  E+  P+  P+AT++FVNG WVG HR+P  LV+T
Sbjct: 536  SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPEATRVFVNGVWVGTHREPAHLVET 595

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRRR D++ EV +VRDIR +E +I+TD GR  RPLFIV+       K  L +KK  +
Sbjct: 596  MRNLRRRGDISPEVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKEHV 655

Query: 293  IALQQRESPE--------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----- 339
              L   E  E        +  W  L+  G +EY+D EEEET MI+MT  DL  +R     
Sbjct: 656  NKLLNAEYDEFSDEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAMTPEDLEASRSSLSE 715

Query: 340  -----LHPEEAYAD-------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                 L  EE  +D             T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 716  TQQKDLQLEEQESDPAKRIKPTFSGSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 775

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIAC
Sbjct: 776  QSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIAC 835

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 836  YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGT 895

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
            Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+V
Sbjct: 896  YEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIV 955

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD
Sbjct: 956  DQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPD 1015

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVTV+ ISK L + GYQ RGF
Sbjct: 1016 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTVEAISKLLREHGYQSRGF 1075

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTG++L A IF GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLR
Sbjct: 1076 EVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLR 1135

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT
Sbjct: 1136 FGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKT 1195

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            +I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1196 NIYQIHIPYAAKLLFQELMAMNISPRLYTE 1225


>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia malayi]
 gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
            [Brugia malayi]
          Length = 1185

 Score = 1178 bits (3048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/832 (67%), Positives = 653/832 (78%), Gaps = 15/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR 
Sbjct: 363  MLPHVGISDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHMGNKRLDLAGPLLAFLFRA 422

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR L ++VR   QK ++   D  L   +K   IT GL YSLATGNWG Q  A  +RAGV
Sbjct: 423  LFRNLLKEVRLTAQKYINKNGDFMLDLCVKTPLITRGLAYSLATGNWGDQKKAHQSRAGV 482

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNL
Sbjct: 483  SQVLNRLTYTATLSHLRRCNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNL 542

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EE++P  I  ATKIFVNG WVGIHRDPE L+ T
Sbjct: 543  ALMAYISVGSLPEPILEFLEEWSMENLEEVAPTAIADATKIFVNGAWVGIHRDPEQLMTT 602

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            L++LRR +D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L +K++ I  L+  
Sbjct: 603  LKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDN 662

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
                   W +LVA G +E ID  EEET M++M   DL          Y DTYTHCEIHP+
Sbjct: 663  SY----TWSELVAGGVVELIDAMEEETVMLAMMPEDLKAG------GYCDTYTHCEIHPA 712

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 713  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTT 772

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L F +LPAGINAIVAI  Y+GYNQEDS+IMNQS IDRG FRS+F+RSYRD+E  +
Sbjct: 773  RSMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQEANL 832

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P ++D+  
Sbjct: 833  DNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLD 892

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT++D S  LR SETG+VDQV+LT N DG +FVK+RVRSVR+PQIGDKF+SRHGQ
Sbjct: 893  AAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQ 952

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT+GM Y QEDMP+T EGITPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATP
Sbjct: 953  KGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATP 1012

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR+LT  +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1013 FNDTVNVQKISNLLQEYGYHLRGNEIMYNGHTGRKLTIQVFLGPTYYQRLKHMVDDKIHS 1072

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQ++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V++C +
Sbjct: 1073 RARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYICNN 1132

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLI +ANL+ NSFEC+ C+NKT +    IPYACKLLFQELM+M+IAPR++ 
Sbjct: 1133 CGLIVVANLRTNSFECKACRNKTQVSAFRIPYACKLLFQELMSMSIAPRLMV 1184


>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
          Length = 1954

 Score = 1178 bits (3048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/803 (69%), Positives = 653/803 (81%), Gaps = 9/803 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL IVE   LL++K  I  L+ R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGSLLLRKHHIDMLKDR 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   + GW  LVA G +EYIDT EEET MI+MT  DL Q +   E AY  TYTHCEIHP+
Sbjct: 647  DY-NNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDK---EYAYCTTYTHCEIHPA 702

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 762

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 763  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 822

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P+R    GMR+  YDKLD+DG+  PG RVSG+DV+IGKT   P + D+  
Sbjct: 823  IGDQEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGLRVSGDDVVIGKTITLPETDDDLD 882

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            G   R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 883  GTTKRFTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 942

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIECI GK+ ++ G+ GDATP
Sbjct: 943  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATP 1002

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1003 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1122

Query: 776  CGLIAIANLKKNSFECRGCKNKT 798
            CGLIAIANL+ N+FEC+GCKNKT
Sbjct: 1123 CGLIAIANLRNNTFECKGCKNKT 1145


>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Apis mellifera]
          Length = 1154

 Score = 1178 bits (3047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/832 (67%), Positives = 660/832 (79%), Gaps = 30/832 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+  +I                     NKRLDLAGPLL   FR 
Sbjct: 347  MLPHVGIRDFCETKKAYFLEFI---------------------NKRLDLAGPLLAFXFRG 385

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 386  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 445

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 446  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 505

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ T
Sbjct: 506  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMAT 565

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R
Sbjct: 566  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKER 625

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +   DG W +LV  G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP+
Sbjct: 626  DYNNDG-WQELVGSGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPA 681

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 682  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 741

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K 
Sbjct: 742  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKR 801

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  
Sbjct: 802  IGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDELD 861

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 862  STTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 921

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 922  KGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 981

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 982  FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1041

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1042 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1101

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLIAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++ 
Sbjct: 1102 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMV 1153


>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
 gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
          Length = 1171

 Score = 1177 bits (3045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/832 (67%), Positives = 653/832 (78%), Gaps = 15/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR 
Sbjct: 349  MLPHVGISDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHMGNKRLDLAGPLLAFLFRA 408

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR L ++VR   QK ++   D  L   +K   IT GL YSLATGNWG Q  A  +RAGV
Sbjct: 409  LFRNLLKEVRLTAQKYINKNGDFMLDLCVKTPLITRGLAYSLATGNWGDQKKAHQSRAGV 468

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNL
Sbjct: 469  SQVLNRLTYTATLSHLRRCNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNL 528

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EE++P  I  ATKIFVNG WVGIHRDPE L+ T
Sbjct: 529  ALMAYISVGSLPEPILEFLEEWSMENLEEVAPTAIADATKIFVNGAWVGIHRDPEQLMTT 588

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            L++LRR +D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L +K++ I  L+  
Sbjct: 589  LKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDN 648

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
                   W +LVA G +E ID  EEET M++M   DL          Y DTYTHCEIHP+
Sbjct: 649  SY----TWSELVAGGVVELIDAMEEETVMLAMMPEDLKAG------GYCDTYTHCEIHPA 698

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 699  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTT 758

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L F +LPAGINAIVAI  Y+GYNQEDS+IMNQS IDRG FRS+F+RSYRD+E  +
Sbjct: 759  RSMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQEANL 818

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P ++D+  
Sbjct: 819  DNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLD 878

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                RYT++D S  LR SETG+VDQV+LT N DG +FVK+RVRSVR+PQIGDKF+SRHGQ
Sbjct: 879  ATIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQ 938

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT+GM Y QEDMP+T EGITPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATP
Sbjct: 939  KGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATP 998

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTGR+LT  +FLGPTYYQRLKHMVDDKIHS
Sbjct: 999  FNDTVNVQKISNLLQEYGYHLRGNEIMYNGHTGRKLTIQVFLGPTYYQRLKHMVDDKIHS 1058

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQ++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V++C +
Sbjct: 1059 RARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYICNN 1118

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLI +ANL+ NSFEC+ C+NKT +    IPYACKLLFQELM+M+IAPR++ 
Sbjct: 1119 CGLIVVANLRTNSFECKACRNKTQVSAFRIPYACKLLFQELMSMSIAPRLMV 1170


>gi|150951109|ref|XP_001387366.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388327|gb|EAZ63343.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
          Length = 1232

 Score = 1177 bits (3045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/871 (64%), Positives = 679/871 (77%), Gaps = 43/871 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 354  LLPNITQEEGFESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 413

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 414  LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 473

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 474  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 533

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HRDP  LV T
Sbjct: 534  SLMTCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHRDPANLVDT 593

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +
Sbjct: 594  MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDEAESETKGDLKLQKEHV 653

Query: 293  IAL-----QQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQA----- 338
              L      + E P++ G    W  L+  G +EY+D EEEET MI+MT  DL  +     
Sbjct: 654  HNLLSSEYDEYEDPDNEGASYTWSSLINDGVVEYVDAEEEETIMIAMTPEDLEASKNAIT 713

Query: 339  -----------------RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                             R+ P   A   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 714  ETPDKSVLEEQELDPAKRIKPTFSAATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT 773

Query: 381  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
            YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIA
Sbjct: 774  YQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIA 833

Query: 441  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
            CYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG
Sbjct: 834  CYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHG 893

Query: 501  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
            +Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 894  TYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGI 953

Query: 559  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
            VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI P
Sbjct: 954  VDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVP 1013

Query: 619  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
            D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RG
Sbjct: 1014 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRG 1073

Query: 679  FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
            FE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGL
Sbjct: 1074 FEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGL 1133

Query: 739  RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNK 797
            RFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL+  IANLKKN FECR CKNK
Sbjct: 1134 RFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMTVIANLKKNQFECRSCKNK 1193

Query: 798  TDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            T+I Q+HIPYA KLLFQELMAM I+PRM T+
Sbjct: 1194 TNIYQIHIPYAAKLLFQELMAMNISPRMYTE 1224


>gi|164660997|ref|XP_001731621.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
 gi|159105522|gb|EDP44407.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
          Length = 1197

 Score = 1176 bits (3043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/850 (65%), Positives = 684/850 (80%), Gaps = 27/850 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   +   TKKAY+FGY++HRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 349  MLPHISMSEGSNTKKAYFFGYMVHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSGLFRM 408

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRK+TRD+  ++Q+CV++ ++ +LQ A++  TIT+GL+YSLATGNWG Q  A  ++AGV
Sbjct: 409  LFRKVTRDIYRHLQRCVEDQREFHLQAAVRHATITNGLRYSLATGNWGDQKKAMQSKAGV 468

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 469  SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 528

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PI+EFLEE+G  +  ++  A  P+ATK+FVNG W+G H DP  LV T
Sbjct: 529  SLMSNISVGTPSAPIVEFLEEFGLTSLIDMQGAD-PKATKVFVNGVWLGTHDDPGQLVDT 587

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQ 297
            LR LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIV++    LLIK+  + AL +
Sbjct: 588  LRDLRRKDDISHEVSVVRDIREKELRIYTDAGRLLRPLFIVDQPSMTLLIKRHHVEALNE 647

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--------LHPEEA---- 345
             E+ E   W  LV  G IEY+DTEEEET +I M+  DL Q+R        + P+ +    
Sbjct: 648  -ETGEGWDWTRLVQSGVIEYLDTEEEETVLICMSPYDLEQSREYKATNGHMPPDMSDATR 706

Query: 346  --------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                     ADT+THCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY
Sbjct: 707  RLRSAHTFAADTWTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNY 766

Query: 398  QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
            Q RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAI CYSGYNQEDSVIMNQS+
Sbjct: 767  QIRMDTMANILYYPQKPLATTRAMEHLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSA 826

Query: 458  IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
            IDRG FRSL++R+++D EKK+G +  E+F +P R   + ++HG+Y+KLD DGL PPGTRV
Sbjct: 827  IDRGLFRSLYYRTFQDMEKKVGVITMEEFEKPTRDTAIRLKHGTYEKLDVDGLVPPGTRV 886

Query: 518  SGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
            SGED+IIGKT P+    DE   ++  +T++D S  ++ +E+G++DQVL+TTN +G +FVK
Sbjct: 887  SGEDIIIGKTAPLPPDSDELGMRSKMHTKKDVSTPMKSTESGIIDQVLITTNGEGAKFVK 946

Query: 576  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
            VRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG 
Sbjct: 947  VRVRSTRVPQVGDKFASRHGQKGTIGITYRQEDMPFTCEGITPDIIINPHAIPSRMTIGH 1006

Query: 636  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
            L+EC++ KVA   G+EGDATPFTD+TV  +S  L   G+Q RG E MYNGHTGR+L A +
Sbjct: 1007 LVECLLSKVATLSGQEGDATPFTDLTVKGVSDILFSLGFQSRGLEVMYNGHTGRKLQAQV 1066

Query: 696  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 755
            +LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG ++
Sbjct: 1067 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGMAN 1126

Query: 756  FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 815
            FLKER++D SDAYR+H+C+ CGL A+ANL+K++FECR C+N++ I Q+HIPYA KLLFQE
Sbjct: 1127 FLKERMYDASDAYRLHICDLCGLTAVANLRKSTFECRACRNRSAISQIHIPYAAKLLFQE 1186

Query: 816  LMAMAIAPRM 825
            LM+M IA R+
Sbjct: 1187 LMSMGIASRL 1196


>gi|254567802|ref|XP_002491011.1| RNA polymerase II second largest subunit B150, part of central core
            [Komagataella pastoris GS115]
 gi|238030808|emb|CAY68731.1| RNA polymerase II second largest subunit B150, part of central core
            [Komagataella pastoris GS115]
 gi|328352458|emb|CCA38857.1| DNA-directed RNA polymerase III subunit C2 [Komagataella pastoris CBS
            7435]
          Length = 1227

 Score = 1176 bits (3041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/867 (64%), Positives = 677/867 (78%), Gaps = 39/867 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+K ++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 353  LLPHITQEEGFETRKTFFLGYMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRI 412

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTR++  Y+Q+C++  +D NL  A+K+ TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 413  LFRKLTREIYRYMQRCIETDRDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGV 472

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 473  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 532

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +L+  I++GS + PI+ FLEEWG E  E+  PA   ++T+IFVNG W GIHRDP MLV T
Sbjct: 533  SLLSGISIGSPSEPIINFLEEWGMEPLEDYDPAQHTKSTRIFVNGVWTGIHRDPSMLVST 592

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRR   ++ EV ++RDIR +E +I+TD GR  RPLFIVE       K  L I K  I
Sbjct: 593  MRDLRRSGAISPEVSIIRDIREREFKIFTDVGRVYRPLFIVEDDESKDNKGELRITKEHI 652

Query: 293  IALQQ-----------RESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
              +QQ            E  +D  GW  LV  G IEY+D EEEET MI+MT  DL     
Sbjct: 653  RKIQQGYDDDAMNDDSEEQEQDVYGWSSLVTSGVIEYVDGEEEETIMIAMTPEDLQTRSL 712

Query: 336  ---------VQARLHPEEAYAD--TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
                        R+ PE + +   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSA
Sbjct: 713  EQKEIDLNDTAKRIKPEMSTSSHHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSA 772

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG+++TNY  RMDT+A +LYYPQKPL  T+AME+L FR+LPAG NAIVAIACYSG
Sbjct: 773  MGKQAMGVFLTNYNVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAIACYSG 832

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDS+IMNQSSIDRG FRSLFFRSY D+EK+ G  + E+F +P R+ T+ ++HG+Y+K
Sbjct: 833  YNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKRFGISIVEEFEKPTRATTLRLKHGTYEK 892

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQV 562
            LD+DGL  PG RVSG+D+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E G+VDQV
Sbjct: 893  LDEDGLIAPGVRVSGDDIIIGKTTPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQV 952

Query: 563  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 622
            LLTTN +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+
Sbjct: 953  LLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLII 1012

Query: 623  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 682
            NPHAIPSRMT+  LIEC++ KV +  G EGDATPFTD+TVD +S  L   GYQ RGFE M
Sbjct: 1013 NPHAIPSRMTVAHLIECLLSKVGSIRGYEGDATPFTDLTVDAVSNLLRDNGYQSRGFEVM 1072

Query: 683  YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 742
            YNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGE
Sbjct: 1073 YNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGE 1132

Query: 743  MERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIV 801
            MERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+I 
Sbjct: 1133 MERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIY 1192

Query: 802  QVHIPYACKLLFQELMAMAIAPRMLTK 828
            Q+HIPYA KLLFQELMAM IAPR+ T+
Sbjct: 1193 QLHIPYAAKLLFQELMAMNIAPRLYTE 1219


>gi|365984393|ref|XP_003669029.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
 gi|343767797|emb|CCD23786.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
          Length = 1227

 Score = 1176 bits (3041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/861 (65%), Positives = 674/861 (78%), Gaps = 34/861 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 361  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 420

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 421  LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 480

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 481  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 540

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L+ T
Sbjct: 541  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMDT 600

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 601  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIN 660

Query: 294  ALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             L   E  + +GG        W  L+ +G +EYID EEEET +I+M   DL    ++ +E
Sbjct: 661  KLMATEYQDIEGGFEDVEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPPAVNEDE 720

Query: 345  AYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
               D               T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 721  PMVDDLDPAKRIRAVQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 780

Query: 390  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
            MG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 781  MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQED 840

Query: 450  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
            S+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDG
Sbjct: 841  SMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDG 900

Query: 510  LAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTN 567
            L  PG RVSGEDVIIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN
Sbjct: 901  LIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTN 960

Query: 568  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
             DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAI
Sbjct: 961  QDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAI 1020

Query: 628  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
            PSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ IS+ L + GYQ RGFE MYNGHT
Sbjct: 1021 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISRLLREHGYQSRGFEVMYNGHT 1080

Query: 688  GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
            G++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1081 GKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDC 1140

Query: 748  MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIP 806
            MIAHGA+ FLKERL + SDA+RVHVC +CGL++ IA L  N FEC+GC NK DI Q+HIP
Sbjct: 1141 MIAHGAASFLKERLMEASDAFRVHVCGNCGLMSVIAKLNHNQFECKGCDNKIDIYQIHIP 1200

Query: 807  YACKLLFQELMAMAIAPRMLT 827
            YA KLLFQELMAM I PR+ T
Sbjct: 1201 YAAKLLFQELMAMNITPRLYT 1221


>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1237

 Score = 1176 bits (3041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/866 (65%), Positives = 676/866 (78%), Gaps = 48/866 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+         KAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 373  MLPHI--------HKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRM 424

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRDV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +   +AGV
Sbjct: 425  LFRKLTRDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGV 484

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 485  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 544

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 545  SLMACISVGSLSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANLVKT 603

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
            +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE  +L ++K+ I  +    
Sbjct: 604  IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENNQLTLRKKHIEWIASGV 663

Query: 298  --------RESPEDGG-------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-- 340
                    R   EDG        W +LV  G IE +D EEEET MI MT  DL  ARL  
Sbjct: 664  PQYDDAGSRLLKEDGTYDNQPYEWSNLVKDGVIELLDAEEEETVMICMTPEDLENARLQQ 723

Query: 341  -----HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                 H +E+  D             +THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 724  AGIDSHRDESEFDPSARLKNFSMAHLWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 783

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYS
Sbjct: 784  AMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYS 843

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YD
Sbjct: 844  GYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYD 903

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 561
            KL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E+G++DQ
Sbjct: 904  KLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGIIDQ 963

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            VL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI+
Sbjct: 964  VLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIV 1023

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG E 
Sbjct: 1024 INPHAIPSRMTIGHLVECLLSKVATIVGNEGDATPFTDLTVESVSQILREQGYQSRGLEI 1083

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MY+GHTGR+L A ++ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFG
Sbjct: 1084 MYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFG 1143

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 801
            EMERDCMI+HG + FLKERLF+ SDAYR+HVC+ CGL AIANLKK +FECR CKNKT   
Sbjct: 1144 EMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACS 1203

Query: 802  QVHIPYACKLLFQELMAMAIAPRMLT 827
            Q++IPYA KLLFQEL +M IA R+ T
Sbjct: 1204 QLYIPYAAKLLFQELQSMNIAARLYT 1229


>gi|367008806|ref|XP_003678904.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
 gi|359746561|emb|CCE89693.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
          Length = 1222

 Score = 1175 bits (3039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/859 (65%), Positives = 673/859 (78%), Gaps = 32/859 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 358  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 417

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 418  LFRKLTKDIFRYMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 477

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 478  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 537

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 538  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 597

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV +VRDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 598  LRTLRRKGDINPEVSMVRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIG 657

Query: 294  ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHP 342
             L   E           ED  W  L+ +G +EYID EEEET +ISM   DL  VQ     
Sbjct: 658  KLMATEYQDIEGGFEDSEDYTWSSLLNEGLVEYIDAEEEETILISMQPEDLEPVQEAHEF 717

Query: 343  EE-----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
             E            +A T+THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 718  NEDDDLAKRIRATQHATTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMG 777

Query: 392  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
            +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 778  VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 837

Query: 452  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
            IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 838  IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 897

Query: 512  PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
             PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN D
Sbjct: 898  APGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQD 957

Query: 570  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
            GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 958  GLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPS 1017

Query: 630  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
            RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 1018 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 1077

Query: 690  RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
            +L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1078 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMI 1137

Query: 750  AHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYA 808
            AHGA+ FLKERL + SDA+RVH+C  CGL++ IA L  N FEC+GC NK DI Q++IPYA
Sbjct: 1138 AHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQINIPYA 1197

Query: 809  CKLLFQELMAMAIAPRMLT 827
             KLLFQELMAM I PR+ T
Sbjct: 1198 AKLLFQELMAMNITPRLYT 1216


>gi|398365417|ref|NP_014794.3| Rpb2p [Saccharomyces cerevisiae S288c]
 gi|2507349|sp|P08518.2|RPB2_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; AltName: Full=B150; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide
 gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
 gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
 gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
 gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
            The Inhibitor Alpha Amanitin
 gi|30749617|pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
 gi|30749738|pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
 gi|34810554|pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
 gi|46015416|pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
 gi|46015781|pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
 gi|56965912|pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
            Matched Nucleotide
 gi|56965924|pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
            Mismatched Nucleotide
 gi|56966108|pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
 gi|56966122|pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
 gi|56966132|pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
 gi|56966142|pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
 gi|56966152|pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
 gi|58177165|pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
 gi|61679445|pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
 gi|61679462|pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With Substrate
            Analogue Gmpcpp
 gi|61679503|pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
 gi|61679516|pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
 gi|83754244|pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
 gi|110590855|pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
 gi|122920062|pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
 gi|122920077|pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dgtp
 gi|122920092|pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
            Gmpcpp
 gi|122921031|pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            2'dutp
 gi|122921067|pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            Gmpcpp
 gi|122921083|pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dutp
 gi|122921098|pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
 gi|122921110|pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
            112006
 gi|134104675|pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
 gi|134104690|pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
 gi|134104711|pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104723|pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104735|pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
 gi|146387185|pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
 gi|160877774|pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
            Complex
 gi|161172228|pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
            Scaffold
 gi|161172241|pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
            Delta Virus-Derived Rna Stem Loop
 gi|190613463|pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
            Elongation Complex
 gi|194368735|pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
            With The Inhibitor Alpha-Amanitin
 gi|224983591|pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
 gi|239781917|pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
 gi|239781930|pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
 gi|239781943|pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
 gi|239781956|pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
            Mismatch
 gi|239781969|pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
 gi|239781983|pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
 gi|239781996|pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
 gi|239782009|pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
 gi|240104512|pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
            Active Site
 gi|254839442|pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839457|pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839472|pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
 gi|254839487|pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
            Mismatch And A Frayed Rna 3'-Uridine
 gi|254839502|pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
 gi|254839517|pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
 gi|254839532|pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
            Mismatch And A Frayed Rna 3'-Guanine
 gi|257471947|pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            D
 gi|257471962|pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            E
 gi|266618766|pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
 gi|269914553|pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
 gi|295982476|pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
 gi|295982489|pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
 gi|325053964|pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
 gi|325053979|pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
 gi|326634539|pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
            Subunit
 gi|343197457|pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
 gi|343197469|pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
 gi|343197481|pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
 gi|343197493|pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
 gi|343197505|pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
 gi|343197517|pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
 gi|343197529|pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 1)
 gi|343197541|pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 2)
 gi|343197553|pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Atp
 gi|343197565|pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Gtp
 gi|343197577|pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            Containing A 5br- U
 gi|343781198|pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
            Containing A 2[prime]-Iodo Atp
 gi|353251634|pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
            Vp16-Mediator-Pol Ii-Tfiif Assembly
 gi|357380837|pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid
 gi|359546291|pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid
 gi|359546309|pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid
 gi|359546326|pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546343|pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546360|pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid And Soaked With Gmpcpp
 gi|359546377|pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid
 gi|359546393|pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546410|pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|374977880|pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid
 gi|374977895|pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
 gi|380764980|pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
 gi|414145447|pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
 gi|414145460|pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
            Tfiib Complex
 gi|1293711|gb|AAC49637.1| Rpb2p polymerase [Saccharomyces cerevisiae]
 gi|1420379|emb|CAA99357.1| RPB2 [Saccharomyces cerevisiae]
 gi|151945769|gb|EDN64010.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
 gi|256272775|gb|EEU07746.1| Rpb2p [Saccharomyces cerevisiae JAY291]
 gi|259149634|emb|CAY86438.1| Rpb2p [Saccharomyces cerevisiae EC1118]
 gi|285815031|tpg|DAA10924.1| TPA: Rpb2p [Saccharomyces cerevisiae S288c]
 gi|349581308|dbj|GAA26466.1| K7_Rpb2p [Saccharomyces cerevisiae Kyokai no. 7]
 gi|392296478|gb|EIW07580.1| Rpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1224

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/859 (65%), Positives = 673/859 (78%), Gaps = 32/859 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 360  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 419

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 420  LFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 479

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 480  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 539

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 540  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 599

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 600  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIA 659

Query: 294  ALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             L   E  + +GG        W  L+ +G +EYID EEEE+ +I+M   DL  A  + E 
Sbjct: 660  KLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEN 719

Query: 345  A-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                          +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 720  DLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 779

Query: 392  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
            +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 780  VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 839

Query: 452  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
            IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 840  IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 899

Query: 512  PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
             PG RVSGEDVIIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN D
Sbjct: 900  APGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD 959

Query: 570  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
            GL+FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 960  GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPS 1019

Query: 630  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
            RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 1020 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 1079

Query: 690  RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
            +L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1080 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMI 1139

Query: 750  AHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYA 808
            AHGA+ FLKERL + SDA+RVH+C  CGL+  IA L  N FEC+GC NK DI Q+HIPYA
Sbjct: 1140 AHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYA 1199

Query: 809  CKLLFQELMAMAIAPRMLT 827
             KLLFQELMAM I PR+ T
Sbjct: 1200 AKLLFQELMAMNITPRLYT 1218


>gi|366996268|ref|XP_003677897.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
 gi|342303767|emb|CCC71550.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
          Length = 1224

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/860 (64%), Positives = 674/860 (78%), Gaps = 32/860 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 360  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLASLFKT 419

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 420  LFRKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 479

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 480  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 539

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L+ T
Sbjct: 540  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMDT 599

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 600  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIA 659

Query: 294  ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISM-------------T 331
             L   E           E+  W  L+ +G +EYID EEEET +ISM              
Sbjct: 660  KLMATEYQDIEGGFEDAEEYTWTSLLNEGLVEYIDAEEEETILISMQPEDLEPPMENEEV 719

Query: 332  INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
            I+D+  A+      +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 720  IDDMDPAKRIRATQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 779

Query: 392  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
            +++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 780  VFLTNYNVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 839

Query: 452  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
            IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 840  IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 899

Query: 512  PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
             PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN D
Sbjct: 900  APGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQD 959

Query: 570  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
            GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 960  GLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPS 1019

Query: 630  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
            RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 1020 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 1079

Query: 690  RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
            +L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1080 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMI 1139

Query: 750  AHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYA 808
            AHGA+ FLKERL + SDA+RVH+C +CGL++ IA L  N FEC+GC NK DI Q+HIPYA
Sbjct: 1140 AHGAAAFLKERLMEASDAFRVHICGNCGLMSVIAKLNHNQFECKGCDNKIDIYQIHIPYA 1199

Query: 809  CKLLFQELMAMAIAPRMLTK 828
             KLLFQELMAM I PR+ T+
Sbjct: 1200 AKLLFQELMAMNITPRLYTE 1219


>gi|344304446|gb|EGW34678.1| DNA-dependent RNA polymerase II [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1238

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/868 (64%), Positives = 679/868 (78%), Gaps = 40/868 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 363  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 422

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 423  LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 482

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 483  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 542

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FLEEWG E+ E+  P+  P +T++FVNG WVG HRDP  LV T
Sbjct: 543  SLMTCISVGTPSEPILYFLEEWGMESLEDYVPSNSPDSTRVFVNGVWVGTHRDPVNLVDT 602

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +
Sbjct: 603  MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDSESETKGDLKLQKEHV 662

Query: 293  IALQQRESPEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------- 339
            + L   E  +  G     W  LV  G +EY+D EEEET MI+MT  DL  ++        
Sbjct: 663  LKLLNSEYDDYDGDEGYNWTSLVNDGIVEYVDAEEEETIMIAMTPEDLEASKNTLSQTQI 722

Query: 340  --LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
              +  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQS
Sbjct: 723  KAMQVEEQELDPAKRIKPVFSSATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS 782

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYS
Sbjct: 783  AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYS 842

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+
Sbjct: 843  GYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYE 902

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQ 561
            KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQ
Sbjct: 903  KLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQ 962

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            VLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I
Sbjct: 963  VLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLI 1022

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMT+  LIEC++ KV+A  G EGDA+PFTDVT + +S+ L + GYQ RGFE 
Sbjct: 1023 INPHAIPSRMTVAHLIECLLSKVSALSGLEGDASPFTDVTAEAVSRLLREHGYQSRGFEV 1082

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFG
Sbjct: 1083 MYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFG 1142

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+I
Sbjct: 1143 EMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMSVIANLKKNQFECRSCKNKTNI 1202

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLTK 828
             Q+HIPYA KLLFQELMAM I+PRM T+
Sbjct: 1203 YQIHIPYAAKLLFQELMAMNISPRMYTE 1230


>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
          Length = 1255

 Score = 1174 bits (3037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/869 (64%), Positives = 675/869 (77%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   D  ETKKA++ GY++HR+L CALGRR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 379  LLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAGPLLAGLFRM 438

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLKYSLATGNWG Q  AA ++AGV
Sbjct: 439  LFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGV 498

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 499  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 558

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+   PI++F+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV  
Sbjct: 559  ALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVSN 618

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 619  VQDLRRGHIISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDTRSMNYGNLVLTKEHI 678

Query: 293  IALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-- 339
              L++ +    G           GW  LV +G +EY+D EEEET MI MT  DL  +R  
Sbjct: 679  TRLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVEYVDAEEEETVMIVMTPGDLETSRQI 738

Query: 340  ----LHPEEA--------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PE A               A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 739  QLGKAVPENAEDEPNKRVNAMSHRSAQTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 798

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TNY  RMDT+A +LYYPQKP+ TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 799  QSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPMATTRSMEFLKFRELPAGQNAIVAIAC 858

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  + E F +P R++T+ ++HG+
Sbjct: 859  YSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQFEKPMRTDTLRLKHGT 918

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            Y+KLDDDG+  PG RVSGED+IIGKT PI  D E  GQ ++ + +RD S  LR +E G+V
Sbjct: 919  YEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDSEELGQRTKMHIKRDASTPLRSTENGIV 978

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 979  DQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPD 1038

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFT+VTVD++SK L   GYQ RGF
Sbjct: 1039 LIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTEVTVDSVSKILRAHGYQSRGF 1098

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYN HTG++L A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGLR
Sbjct: 1099 EVMYNAHTGQKLVAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLR 1158

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLF+ SDA+RVH+C+ CGL+  +ANLKKNSFECR CKNKT
Sbjct: 1159 FGEMERDCMIAHGASAFLKERLFEVSDAFRVHICDICGLMTPVANLKKNSFECRPCKNKT 1218

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1219 RISQVHIPYAAKLLFQELASMNIAARMYT 1247


>gi|294659491|ref|XP_002770594.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
 gi|199434003|emb|CAR65929.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
          Length = 1232

 Score = 1174 bits (3037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/869 (64%), Positives = 680/869 (78%), Gaps = 41/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 356  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 415

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 416  LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 475

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 476  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 535

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+++ PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 536  SLMSCISVGTSSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 595

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L +KK ++
Sbjct: 596  MRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDAESETKGELKLKKENV 655

Query: 293  IALQQRESPEDG--------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----- 339
              L   E  + G         W  LV  G +EY+D EEEET MI+MT  DL  +R     
Sbjct: 656  HKLINAEYDDFGDDPDSLSYSWSSLVNDGIVEYVDAEEEETIMIAMTPEDLETSRSTLSE 715

Query: 340  -----LHPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                 +  EE   D            T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQ
Sbjct: 716  TEQKDMQLEEQEVDPAKRIKPTLGLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQ 775

Query: 383  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
            SAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACY
Sbjct: 776  SAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACY 835

Query: 443  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
            SGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ +RHG+Y
Sbjct: 836  SGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLRHGTY 895

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVD 560
            +KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VD
Sbjct: 896  EKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGIVD 955

Query: 561  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
            QVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD+
Sbjct: 956  QVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVPDL 1015

Query: 621  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
            I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE
Sbjct: 1016 IINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFE 1075

Query: 681  TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
             MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRF
Sbjct: 1076 VMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRF 1135

Query: 741  GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTD 799
            GEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+
Sbjct: 1136 GEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTN 1195

Query: 800  IVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1196 IYQIHIPYAAKLLFQELMAMNISPRLYTE 1224


>gi|50293059|ref|XP_448959.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51701949|sp|Q6FLD5.1|RPB2_CANGA RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|49528272|emb|CAG61929.1| unnamed protein product [Candida glabrata]
          Length = 1223

 Score = 1174 bits (3037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/860 (64%), Positives = 675/860 (78%), Gaps = 33/860 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 358  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 417

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 418  LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 477

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 478  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 537

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 538  SLMSCISVGADPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 597

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR +EL+I+TD GR  RPLFIVE      ++ L ++K  + 
Sbjct: 598  LRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVA 657

Query: 294  ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--- 341
             L   E           ED  W  L+ +G +EYID EEEE+ +I+M   DL    +    
Sbjct: 658  KLMATEYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDI 717

Query: 342  PEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
            P+E            +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 718  PKENVDLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 777

Query: 391  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 450
            G+++TNY FRMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 778  GVFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDS 837

Query: 451  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 510
            +IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLD+DGL
Sbjct: 838  MIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGL 897

Query: 511  APPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 568
              PG RVSGED+IIGKTTPI+ DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN 
Sbjct: 898  IAPGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQ 957

Query: 569  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
            DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIP
Sbjct: 958  DGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIP 1017

Query: 629  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 688
            SRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG
Sbjct: 1018 SRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTG 1077

Query: 689  RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 748
            ++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCM
Sbjct: 1078 KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCM 1137

Query: 749  IAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPY 807
            IAHGA+ FLKERL + SDA+RVH+C  CGL++ IA L  N FEC+GC NK DI Q+HIPY
Sbjct: 1138 IAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQIHIPY 1197

Query: 808  ACKLLFQELMAMAIAPRMLT 827
            A KLLFQELMAM I PR+ T
Sbjct: 1198 AAKLLFQELMAMNITPRLYT 1217


>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
          Length = 1228

 Score = 1174 bits (3036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/870 (64%), Positives = 677/870 (77%), Gaps = 44/870 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 353  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 412

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 413  LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 472

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 473  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 532

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PI  FL +WG E  E+  P+  P AT++FVNG WVG+HR+P  LV  
Sbjct: 533  SLMSCISVGTPSEPISSFLRDWGLEPLEDYVPSNSPDATRVFVNGVWVGVHREPASLVDY 592

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRR  D++ EV ++RDIR KEL+I+TD GR  RPLFIV+       K  L +KK  +
Sbjct: 593  MRDLRRNGDISPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLKKEHV 652

Query: 293  IALQQRESPEDGG-------WHDLVAKGFIEYIDTEEEETTMISMTINDL---------- 335
              L   ES  DG        W  LV +G +EY+D EEEET MI+MT +DL          
Sbjct: 653  NRL--LESSYDGDEDEPSYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTET 710

Query: 336  VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
             Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 711  QQQDLQMEEQELDPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 770

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIAC
Sbjct: 771  QSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIAC 830

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDS+IMNQSSIDRGFFRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 831  YSGYNQEDSMIMNQSSIDRGFFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGT 890

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
            Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+V
Sbjct: 891  YEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIV 950

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD
Sbjct: 951  DQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPD 1010

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGF
Sbjct: 1011 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGF 1070

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLR
Sbjct: 1071 EVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLR 1130

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL+  IANLKKN FECR CKNKT
Sbjct: 1131 FGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMTVIANLKKNQFECRSCKNKT 1190

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            +I Q+HIPYA KLLFQELMAM I PR+ T+
Sbjct: 1191 NIYQIHIPYAAKLLFQELMAMNITPRLYTE 1220


>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
          Length = 1194

 Score = 1174 bits (3036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/833 (66%), Positives = 657/833 (78%), Gaps = 11/833 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  + CETKKA++ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR 
Sbjct: 354  LLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRA 413

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR L +++R   QK ++   D  L   +K  TIT GL YSLATGNWG Q  A  +RAGV
Sbjct: 414  LFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLAYSLATGNWGDQKKAHQSRAGV 473

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNL
Sbjct: 474  SQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNL 533

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EE+SP+ I  ATKIFVNG WVGIHR+PE+L+ T
Sbjct: 534  ALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPELLMDT 593

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            L++LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVEKQ+L ++KR I  L+  
Sbjct: 594  LKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEKQKLALRKRHIDLLKDV 653

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +  +   W DLV  G +E ID+ EEET+MI+M   DL          Y DTYTHCEIHP+
Sbjct: 654  DETKKYTWSDLVGNGVVELIDSMEEETSMIAMMPEDLRSG------GYCDTYTHCEIHPA 707

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 708  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTT 767

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L F +LPAGINAIVAI  YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E  +
Sbjct: 768  RSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANI 827

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P   D+  
Sbjct: 828  DNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLD 887

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                +Y +RD S  LR SETG+VDQV+L+ N DG +FVK+R+RSVR+PQIGDKF+SRHGQ
Sbjct: 888  ATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQ 947

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT+G+ Y QEDMP+T EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATP
Sbjct: 948  KGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATP 1007

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTG++LT  IF GPTYYQRLKHMVDDKIHS
Sbjct: 1008 FNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHS 1067

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+Q++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC +
Sbjct: 1068 RARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNN 1127

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            CGLI +ANL+ NSFEC+ C+NKT +  V IPYACKLLFQELM+M+IAPR++ K
Sbjct: 1128 CGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVK 1180


>gi|156835986|ref|XP_001642238.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
 gi|156112711|gb|EDO14380.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
          Length = 1223

 Score = 1173 bits (3034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/859 (65%), Positives = 672/859 (78%), Gaps = 34/859 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ 
Sbjct: 357  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKT 416

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 417  LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 476

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 477  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 536

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 537  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 596

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 597  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVENDEQLGHKELKVRKGHIA 656

Query: 294  ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQ----- 337
             L   E           E+  W  L+ +G +EYID EEEET +I+M   DL  VQ     
Sbjct: 657  RLMATEYQDIEGGFEDSEEYTWSSLLNEGLVEYIDAEEEETILIAMQPEDLDPVQEEEEM 716

Query: 338  --------ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
                    A+      +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 717  EVDENVDTAKRIRSVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 776

Query: 390  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
            MG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 777  MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQED 836

Query: 450  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
            S+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HGSYDKLDDDG
Sbjct: 837  SMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDG 896

Query: 510  LAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTN 567
            L  PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN
Sbjct: 897  LIAPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTN 956

Query: 568  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
             DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAI
Sbjct: 957  QDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAI 1016

Query: 628  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
            PSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHT
Sbjct: 1017 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHT 1076

Query: 688  GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
            G++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1077 GKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDC 1136

Query: 748  MIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIP 806
            MIAHGA+ FLKERL + SDA+RVH+C  CGL+  IA L  N FEC+GC NK DI Q+HIP
Sbjct: 1137 MIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIP 1196

Query: 807  YACKLLFQELMAMAIAPRM 825
            YA KLLFQELMAM I PR+
Sbjct: 1197 YAAKLLFQELMAMNITPRL 1215


>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
 gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
          Length = 1220

 Score = 1172 bits (3033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/861 (64%), Positives = 680/861 (78%), Gaps = 35/861 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 355  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRD+  ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  A  +RAGV
Sbjct: 415  LFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMTSRAGV 474

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T
Sbjct: 535  SLMSCISVGTDPLPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPAKLVDT 594

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            +R+LRR+ DV +EV +VRDIR KEL+I+TD GR  RPLFIV++      + L ++K  I 
Sbjct: 595  IRKLRRKGDVTSEVSIVRDIREKELKIFTDAGRVYRPLFIVDENEETGVKELKLRKGHIR 654

Query: 294  ALQQRESPE-DGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARL 340
             L   E  + +GG         W  L+ +G +EYID EEEET +I+M   DL   ++A  
Sbjct: 655  KLMMTEYQDIEGGFEEEDINYTWSSLLNEGLVEYIDAEEEETILIAMQHEDLDPTIEA-A 713

Query: 341  HPEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
             PEE            ++ T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 714  DPEEELDPAKRIKAIHHSSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 773

Query: 390  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
            MG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 774  MGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQED 833

Query: 450  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
            S+IMNQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDDG
Sbjct: 834  SMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPQRTNTLRMKHGTYDKLDDDG 893

Query: 510  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTN 567
            L  PG RVSG+D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TTN
Sbjct: 894  LIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTN 953

Query: 568  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
             +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHAI
Sbjct: 954  QEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAI 1013

Query: 628  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
            PSRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGHT
Sbjct: 1014 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHT 1073

Query: 688  GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
            G++L A IF GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1074 GKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDC 1133

Query: 748  MIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIP 806
            MIAHGA+ FLKERL + SDA+RVH+C  CGL+  +A LK N FECRGCKNK DI Q+HIP
Sbjct: 1134 MIAHGAAAFLKERLMEASDAFRVHICGVCGLMTVVAKLKHNQFECRGCKNKIDIYQIHIP 1193

Query: 807  YACKLLFQELMAMAIAPRMLT 827
            YA KLLFQELMAM IAPR+ T
Sbjct: 1194 YAAKLLFQELMAMNIAPRLYT 1214


>gi|403214331|emb|CCK68832.1| hypothetical protein KNAG_0B03910 [Kazachstania naganishii CBS 8797]
          Length = 1220

 Score = 1172 bits (3032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/859 (64%), Positives = 675/859 (78%), Gaps = 32/859 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ 
Sbjct: 356  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKT 415

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 416  LFRKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 475

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 476  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 535

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 536  SLMSSISVGTDPMPIITFLSEWGLEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 595

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 596  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHIA 655

Query: 294  ALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMT------------- 331
             L   E  + +GG        W  L+ +G +EYID EEEET +I+M              
Sbjct: 656  KLMATEYQDIEGGLDEADEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPVIEEENP 715

Query: 332  INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
            I+D+  A+       A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 716  IDDMDPAKRIKASQNATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 775

Query: 392  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
            +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 776  VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 835

Query: 452  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
            IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 836  IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 895

Query: 512  PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
             PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G++DQVL+TTN D
Sbjct: 896  APGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIIDQVLVTTNQD 955

Query: 570  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
            GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY++EDMP+T EGI PD+I+NPHAIPS
Sbjct: 956  GLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYSREDMPFTAEGIVPDLIINPHAIPS 1015

Query: 630  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
            RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GY  RGFE MYNGHTG+
Sbjct: 1016 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYHSRGFEVMYNGHTGK 1075

Query: 690  RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
            +L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1076 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMI 1135

Query: 750  AHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYA 808
            AHGA+ FLKERL + SD++RVH+C +CGL++ IA L  N FEC+GC NK DI Q+ IPYA
Sbjct: 1136 AHGAAAFLKERLMEASDSFRVHICGNCGLMSVIAKLSHNQFECKGCNNKIDIYQIRIPYA 1195

Query: 809  CKLLFQELMAMAIAPRMLT 827
             KLLFQELMAM I PR+ T
Sbjct: 1196 AKLLFQELMAMNITPRLYT 1214


>gi|393218117|gb|EJD03605.1| DNA-dependent RNA polymerase II second largest subunit [Fomitiporia
            mediterranea MF3/22]
          Length = 1274

 Score = 1172 bits (3032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/890 (63%), Positives = 682/890 (76%), Gaps = 65/890 (7%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 379  MLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLTGLFRM 438

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+ N+  AIK +T+T+GLKYSLATGNWG Q  A  ++AGV
Sbjct: 439  LFRKLTKDVYRYLQKCVETHKEFNINMAIKTQTLTNGLKYSLATGNWGDQKKAMSSKAGV 498

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 499  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 558

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P+++FLEEWG E  EE + +     TK+FVNG W+G+ RDP  +V T
Sbjct: 559  ALMAVISVGSVSGPVIDFLEEWGLETLEENTQST--NLTKVFVNGVWLGVCRDPLNMVNT 616

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR- 298
            LR LRR  D ++EV +VRDIR +E+RIY+D GR  RPLFIVE  +L +K++ +  LQ++ 
Sbjct: 617  LRTLRRMQDFDSEVSIVRDIREREIRIYSDAGRVLRPLFIVEDHKLKLKRQHLRWLQEKW 676

Query: 299  ---ESP---------------------EDG-----------------GWHDLVAKGFIEY 317
               E P                     E+G                  W  L+  G IE 
Sbjct: 677  RIEERPYVPREERNKEEVSEGETVADEEEGRPIMRDERRVKRKKKPFTWSSLIRDGVIEL 736

Query: 318  IDTEEEETTMISMTINDLVQARL-------------HPEE-----AYADTYTHCEIHPSL 359
            +D EEEET MI MT +DL+++RL             +P         A T+THCEIHPS+
Sbjct: 737  LDAEEEETVMICMTPDDLLESRLLRRGLDPRAEADFNPAARLKPLPIAHTWTHCEIHPSM 796

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  R DT+A +LYYPQKPL TTR
Sbjct: 797  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLMRQDTMANILYYPQKPLATTR 856

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            AME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D+EK+ G
Sbjct: 857  AMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYMDQEKRSG 916

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ 538
             ++ ++F +P R  T+ M+HG+YDKL+DDGL  PG  V G+D+IIGKT PI  D E  GQ
Sbjct: 917  AIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPPDSEELGQ 976

Query: 539  ASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
             +R +T+RD S  L+ +E G+VDQV++TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQK
Sbjct: 977  RTRGHTKRDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRSTRIPQIGDKFASRHGQK 1036

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPF
Sbjct: 1037 GTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATIVGNEGDATPF 1096

Query: 658  TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
            TD+TVD++S  L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIH+R 
Sbjct: 1097 TDLTVDSVSSVLREKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHARA 1156

Query: 718  RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
            RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLFD SDAYR+HVC+ CG
Sbjct: 1157 RGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAAFLKERLFDASDAYRLHVCDLCG 1216

Query: 778  LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            L AIANLKK SFECR CKNKT I Q++IPYA KLLFQEL AM IA R+ T
Sbjct: 1217 LTAIANLKKQSFECRACKNKTSISQLYIPYAAKLLFQELQAMNIAARLYT 1266


>gi|409193805|gb|AFV31136.1| RPB2 [Amoeboaphelidium protococcarum]
          Length = 1174

 Score = 1172 bits (3031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/834 (65%), Positives = 671/834 (80%), Gaps = 9/834 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHVG  +  E+KKA++FGY+I+RLL CAL RR  DDRDH+  KRLDLAGPLLGGLFRM
Sbjct: 344  FLPHVGVEEHSESKKAFFFGYMINRLLQCALERRELDDRDHFAKKRLDLAGPLLGGLFRM 403

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT DV  Y+QKC++ G++ NL  A+K + ITSGLKYS+ATGNWG Q+ A  TRAGV
Sbjct: 404  LFRKLTTDVGKYLQKCINEGREFNLPLAVKHQIITSGLKYSIATGNWGDQSKAMSTRAGV 463

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY STLSHLRR N+PIGREGKLAKPRQLHNSQ+GM+CPAE+PEGQACGLVKNL
Sbjct: 464  SQVLNRYTYISTLSHLRRCNAPIGREGKLAKPRQLHNSQFGMVCPAESPEGQACGLVKNL 523

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM Y++VGS   P+LEFLEEW  EN  +++P+ I  ATK+FVNG WVGIHRDP+ML + 
Sbjct: 524  ALMAYVSVGSPTSPVLEFLEEWAMENLADVNPSFIGGATKVFVNGVWVGIHRDPDMLAEN 583

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L++LRR +D++ EV +VRD R +ELR+YTD GR  RPLFIV+   L++ K  +  L+++E
Sbjct: 584  LKQLRRSLDLSQEVSIVRDYRDRELRLYTDSGRVCRPLFIVKDGALVLTKNHVRLLEKKE 643

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD--TYTHCEIHP 357
                 GW+ L+A G +EYIDTEEEET +ISMT  DLV++++       D   +THCE+HP
Sbjct: 644  I----GWNQLLADGVVEYIDTEEEETALISMTPEDLVESKMRAMNGQPDLKKWTHCELHP 699

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            SL+ GV AS IPFPDHNQSPRN Y ++  KQ +G+Y+TN+Q RMDTL+ VL+YPQKPLVT
Sbjct: 700  SLMFGVSASTIPFPDHNQSPRNCYSASQSKQTIGVYLTNFQQRMDTLSSVLFYPQKPLVT 759

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            TRAMEHLH+R+LPAG NAIVAIAC+ GYNQEDS++M+QS+IDRG FRS FFR+Y ++ KK
Sbjct: 760  TRAMEHLHYRELPAGQNAIVAIACHGGYNQEDSILMSQSAIDRGLFRSFFFRTYTEQVKK 819

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
            +G L  E+  +P+  +T+  R  +Y+KLD DGL PPGTRVSG+D+++GKT PI  D E  
Sbjct: 820  VGALELEEIEKPNPRDTLIRRGNNYEKLDADGLVPPGTRVSGDDILVGKTVPIPVDSEEL 879

Query: 537  GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
            GQ  +R+ +RD S ++R +E G+VDQVLLTTN   L+  K RVRSV+IPQ+GDK  SRHG
Sbjct: 880  GQRTARHVKRDSSATMRSTEYGVVDQVLLTTNDLDLKMCKTRVRSVKIPQVGDKHCSRHG 939

Query: 596  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
            QKG +GM Y QED+P+T +GI PD+I+NPHAIPSRMTIG LIEC++ KV+A  G EGD T
Sbjct: 940  QKGVLGMLYRQEDLPYTADGIVPDVIINPHAIPSRMTIGHLIECLLSKVSALTGDEGDGT 999

Query: 656  PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            PFTDVTV++IS AL KCGYQ RGFE +YNG TG++L A IF+GPT+YQRLKHMVDDKIH+
Sbjct: 1000 PFTDVTVEDISNALAKCGYQKRGFEVLYNGQTGQKLAANIFIGPTFYQRLKHMVDDKIHA 1059

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQILTRQP EGRSRDGGLRFGEME D ++AHGA+ FLKERLFD SDA+RVHVC+ 
Sbjct: 1060 RARGPVQILTRQPVEGRSRDGGLRFGEMEHDVIVAHGAAMFLKERLFDVSDAFRVHVCDL 1119

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            CGL+ IANL KNS+ECR C NKT I Q+H+PYA KLLFQELM+M IAPR++  E
Sbjct: 1120 CGLMCIANLSKNSYECRICHNKTQISQIHLPYATKLLFQELMSMNIAPRIVVDE 1173


>gi|452820468|gb|EME27510.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1184

 Score = 1171 bits (3030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/863 (65%), Positives = 671/863 (77%), Gaps = 45/863 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+G G+ CE KK Y+ GY+I+RLL  ALGRR  DDRDHYGNKRLDLAGPLLG +FR 
Sbjct: 334  FLPHIGIGEGCELKKGYFLGYVINRLLSTALGRREVDDRDHYGNKRLDLAGPLLGEMFRH 393

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
              R++ ++ R+ +Q+ +D GK +NLQ A+K++TIT+GLK +LATGNW +      R GVS
Sbjct: 394  HLRRVLKETRSILQRNLDTGKGLNLQGAVKSRTITNGLKNALATGNWIRG-----RTGVS 448

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN+ WGM+CPAETPEGQACGL KNLA
Sbjct: 449  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNTHWGMICPAETPEGQACGLTKNLA 508

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VG+ + P++EFLEEW  EN  EISP+V+P ATK+FVNG WVGIHR+PE LV+TL
Sbjct: 509  LMAYISVGTPSAPVIEFLEEWSMENLLEISPSVVPLATKVFVNGAWVGIHREPEDLVRTL 568

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------------------ 282
            + LRR+  +  EV +V D + KELRIYTD GR  RPLFIV                    
Sbjct: 569  KELRRQGTIKEEVSIVMDHQFKELRIYTDPGRVCRPLFIVNPPPPPISFEDANEDTNVFG 628

Query: 283  ----QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
                Q L IKK  I  L+ R   +   +  LV  G IEY+D  EEETTMI+M I DL+  
Sbjct: 629  QRPPQTLAIKKSHIDMLK-RTDGDRCSFSFLVENGLIEYVDVNEEETTMIAMNIKDLI-- 685

Query: 339  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                E      YTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQ+AMGKQAMGIY TNYQ
Sbjct: 686  ----ETDSEVVYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQAAMGKQAMGIYATNYQ 741

Query: 399  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
             RMDT+A+VLYYPQKPLVTTRAMEHL FR LPAGINAIVAIACYSG+NQEDSVI++QS++
Sbjct: 742  LRMDTMAHVLYYPQKPLVTTRAMEHLQFRSLPAGINAIVAIACYSGFNQEDSVILSQSAV 801

Query: 459  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
            DRG FRSLFFR++RDEE++     +E F  P+    +G + G+YDKL++DGL   GTRVS
Sbjct: 802  DRGLFRSLFFRTFRDEERRRLGGAQETFEVPNPKECIGTKRGAYDKLEEDGLVAEGTRVS 861

Query: 519  GEDVIIGKTTPISQDEAQGQASRY-----------TRRDHSISLRHSETGMVDQVLLTTN 567
            G+D+++GKT P+ +  A G+               T++D S S+R +ETG+VD+V+L  N
Sbjct: 862  GDDILVGKTCPLGRMAANGEEDETWKAYSQTLGGKTKKDASTSMRSTETGVVDKVMLAAN 921

Query: 568  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
              G RFVKVR+RSVR+PQ+GDKFSSRHGQKGTVG+TY QED+P+ V+GI PDII+NPHAI
Sbjct: 922  EAGARFVKVRIRSVRVPQVGDKFSSRHGQKGTVGITYGQEDLPFNVDGIVPDIIINPHAI 981

Query: 628  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
            PSRMTIGQLIEC+ GKV+A  G+EGDATPFT VTVD IS+ L   GYQ RG+E MYNG T
Sbjct: 982  PSRMTIGQLIECLQGKVSAIAGREGDATPFTWVTVDEISQQLKTLGYQSRGWELMYNGFT 1041

Query: 688  GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
            GR L A IF+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGR+R+GGLRFGEMERDC
Sbjct: 1042 GRPLEAHIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRAREGGLRFGEMERDC 1101

Query: 748  MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 807
            MI+HGA+ FLKERL D+SDAYR+HVC  CGLIAIA+LK+N+FECR C+NKT+I QV IPY
Sbjct: 1102 MISHGAAFFLKERLMDESDAYRIHVCNLCGLIAIADLKRNTFECRSCRNKTEISQVFIPY 1161

Query: 808  ACKLLFQELMAMAIAPRMLTKED 830
            ACKLLFQELMAM IAPR++T ++
Sbjct: 1162 ACKLLFQELMAMGIAPRIVTADE 1184


>gi|444313813|ref|XP_004177564.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
 gi|387510603|emb|CCH58045.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
          Length = 1236

 Score = 1171 bits (3029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/869 (64%), Positives = 671/869 (77%), Gaps = 44/869 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 364  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 423

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRD+  Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 424  LFRKLTRDIFRYMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 483

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 484  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 543

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 544  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 603

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIV+       + L ++K  I 
Sbjct: 604  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVDDDSELGHKELKVRKGHIA 663

Query: 294  ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             L   E           ED  W  L+ +G +EYID EEEET +ISM   DL    + PEE
Sbjct: 664  KLLATEYQDIEGGYEDEEDYTWTSLLNEGLVEYIDAEEEETILISMAPEDL--EPISPEE 721

Query: 345  A-----------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                                    +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 722  IDEANNSEESAGHVDVAKRIKALHHAATFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 781

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIAC
Sbjct: 782  QSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIAC 841

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HGS
Sbjct: 842  YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLKMKHGS 901

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMV 559
            YDKLDDDGL  PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G++
Sbjct: 902  YDKLDDDGLISPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGII 961

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL+TTN DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD
Sbjct: 962  DQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPD 1021

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GY  RGF
Sbjct: 1022 LIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYHSRGF 1081

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLR
Sbjct: 1082 EIMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLR 1141

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGA+ FLKERL + SDA+RVH+C  CGL+  IA L  N FEC+GC NK 
Sbjct: 1142 FGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKI 1201

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            DI Q+ IPYA KLLFQELMAM I PR+ T
Sbjct: 1202 DIYQIKIPYAAKLLFQELMAMNITPRLYT 1230


>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
          Length = 1255

 Score = 1170 bits (3027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/869 (64%), Positives = 673/869 (77%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   D  ETKKA++ GY++HR+L CALGRR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 379  LLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAGPLLAGLFRM 438

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLKYSLATGNWG Q  AA ++AGV
Sbjct: 439  LFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGV 498

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 499  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 558

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+   PI++F+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV  
Sbjct: 559  ALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVSN 618

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 619  VQDLRRGHIISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDTRSMNYGNLVLTKEHI 678

Query: 293  IALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-- 339
              L++ +    G           GW  LV +G +EY+D EEEET MI MT  DL  +R  
Sbjct: 679  ARLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVEYVDAEEEETVMIVMTPGDLETSRQI 738

Query: 340  ----LHPEEA--------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  P  A               A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 739  QLGKAVPGNAEDEPNKRVNAMSHRSAQTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 798

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TNY  RMDT+A +LYYPQKP+ TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 799  QSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPMATTRSMEFLKFRELPAGQNAIVAIAC 858

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  + E F +P R++T+ ++HG+
Sbjct: 859  YSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQFEKPMRTDTLRLKHGT 918

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            Y+KLDDDG+  PG RVSGED+IIGKT PI  D E  GQ ++ + +RD S  LR +E G+V
Sbjct: 919  YEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDSEELGQRTKLHVKRDASTPLRSTENGIV 978

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 979  DQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPD 1038

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFT+VTVD++SK L   GYQ RGF
Sbjct: 1039 LIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTEVTVDSVSKILRAHGYQSRGF 1098

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYN HTG +L A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGLR
Sbjct: 1099 EVMYNAHTGLKLVAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLR 1158

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLF+ SDA+RVH+C+ CGL+  +ANLKKNSFECR CKNKT
Sbjct: 1159 FGEMERDCMIAHGASAFLKERLFEVSDAFRVHICDICGLMTPVANLKKNSFECRPCKNKT 1218

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1219 RISQVHIPYAAKLLFQELASMNIAARMYT 1247


>gi|149244118|ref|XP_001526602.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146448996|gb|EDK43252.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1238

 Score = 1170 bits (3026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/873 (64%), Positives = 677/873 (77%), Gaps = 45/873 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 358  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 417

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 418  LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 477

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 478  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 537

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FL +WG E  E+ +PA  P  T++FVNG WVG+HR+P  LV  
Sbjct: 538  SLMSCISVGTPSDPILSFLRDWGLEPLEDYTPANSPDVTRVFVNGVWVGVHREPASLVDY 597

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +
Sbjct: 598  MRDLRRNGDISPEVSLIRDIREKEFKIFTDAGRVYRPLFIVDDKPDSATKGDLKLQKEHV 657

Query: 293  IALQQR------ESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDL------- 335
              L +       E  ED      W  LV +G +EY+D EEEET MI+MT +DL       
Sbjct: 658  NQLLESSYEGYDEDDEDAAPKYTWSSLVKEGIVEYVDAEEEETIMIAMTPDDLEASKSSL 717

Query: 336  ---VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
                Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPR
Sbjct: 718  TETQQQNLQMEEQELDPAKRIKPTNSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPR 777

Query: 379  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
            NTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVA
Sbjct: 778  NTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVA 837

Query: 439  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
            IACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++
Sbjct: 838  IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLK 897

Query: 499  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSET 556
            HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+
Sbjct: 898  HGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTES 957

Query: 557  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
            G+VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+
Sbjct: 958  GIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSEGV 1017

Query: 617  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
             PD+I+NPHAIPSRMT+  LIEC++ KV+A  G EGDA+PFTDVT + +SK L + GYQ 
Sbjct: 1018 VPDLIINPHAIPSRMTVAHLIECLLSKVSALSGLEGDASPFTDVTAEAVSKLLREHGYQS 1077

Query: 677  RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 736
            RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDG
Sbjct: 1078 RGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDG 1137

Query: 737  GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCK 795
            GLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CK
Sbjct: 1138 GLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCK 1197

Query: 796  NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            NKT+I Q+HIPYA KLLFQELMAM I PR+ T+
Sbjct: 1198 NKTNIYQIHIPYAAKLLFQELMAMNITPRLYTE 1230


>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
 gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
          Length = 1222

 Score = 1170 bits (3026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/862 (64%), Positives = 672/862 (77%), Gaps = 36/862 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ 
Sbjct: 356  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKT 415

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 416  LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 475

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 476  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 535

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 536  SLMSCISVGTDPMPIITFLSEWGMEPLEDYIPHQSPDATRVFVNGVWHGVHRNPARLMET 595

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 596  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHIN 655

Query: 294  ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             L   E           E+  W  L+ +G +EYID EEEET +I+M   DL +     EE
Sbjct: 656  KLMATEYQDIEGGFEDSEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDL-EPMGEEEE 714

Query: 345  AYADT----------------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
               DT                +THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 715  TQNDTAMDPAKRIKATQNATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQ 774

Query: 389  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
            AMG+++TN+  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQE
Sbjct: 775  AMGVFLTNFNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQE 834

Query: 449  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
            DS+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDD
Sbjct: 835  DSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPHRTNTLRMKHGTYDKLDDD 894

Query: 509  GLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
            GL  PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TT
Sbjct: 895  GLIAPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITT 954

Query: 567  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
            N DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T +GI PD+I+NPHA
Sbjct: 955  NQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTADGIVPDLIINPHA 1014

Query: 627  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
            IPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GY  RGFE MYNGH
Sbjct: 1015 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYHSRGFEVMYNGH 1074

Query: 687  TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
            TG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERD
Sbjct: 1075 TGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1134

Query: 747  CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHI 805
            CMIAHGA+ FLKERL + SDA+RVH+C +CGL++ IA L  N FEC+GC NK DI Q+HI
Sbjct: 1135 CMIAHGAAAFLKERLMEASDAFRVHICGNCGLMSVIAKLSHNQFECKGCNNKIDIYQIHI 1194

Query: 806  PYACKLLFQELMAMAIAPRMLT 827
            PYA KLLFQELMAM I PR+ T
Sbjct: 1195 PYAAKLLFQELMAMNITPRLFT 1216


>gi|401623583|gb|EJS41677.1| rpb2p [Saccharomyces arboricola H-6]
          Length = 1224

 Score = 1169 bits (3025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/859 (64%), Positives = 669/859 (77%), Gaps = 32/859 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 360  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 419

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 420  LFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 479

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 480  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 539

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 540  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 599

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR--------- 290
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE    L  K          
Sbjct: 600  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIG 659

Query: 291  DIIALQQR------ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             I+A + +      E  E+  W  L+ +G +EYID EEEE+ +I+M   DL       E 
Sbjct: 660  KIMATEYQDIEGGFEDSEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTESGEEN 719

Query: 345  A-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                          +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 720  DPDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 779

Query: 392  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
            +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 780  VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 839

Query: 452  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
            IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 840  IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 899

Query: 512  PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
             PG RVSGEDVIIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN D
Sbjct: 900  APGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD 959

Query: 570  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
            GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 960  GLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPS 1019

Query: 630  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
            RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 1020 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 1079

Query: 690  RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
            +L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1080 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMI 1139

Query: 750  AHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYA 808
            AHGA+ FLKERL + SDA+RVH+C  CGL+  IA L  N FEC+GC NK DI Q+HIPYA
Sbjct: 1140 AHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYA 1199

Query: 809  CKLLFQELMAMAIAPRMLT 827
             KLLFQELMAM I PR+ T
Sbjct: 1200 AKLLFQELMAMNITPRLYT 1218


>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
 gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
          Length = 1196

 Score = 1169 bits (3025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/833 (66%), Positives = 666/833 (79%), Gaps = 24/833 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  D+CETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRL             
Sbjct: 349  MLPHVGISDYCETKKAYFLGYMVHRLLLTALGRREVDDRDHYGNKRL------------- 395

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
             FR L ++V+ Y QK VDNG+D NL+ AIK K IT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 396  -FRNLLKEVKMYAQKFVDNGRDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQSRAGV 454

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ STLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEGQA GLVKNL
Sbjct: 455  SQVLNRLTFVSTLSHLRRLNSPIGRDGKLARPRQLHNTHWGMICPAETPEGQAVGLVKNL 514

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EE+S + +  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 515  ALMAYISVGSQPSPILEFLEEWSMENLEEVSHSALASATKIFVNGCWVGIHRDPEQLMST 574

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++DV  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L++KK  I +++  
Sbjct: 575  LRKLRRQMDVIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLVLKKNHIESMKTA 634

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +  E  GW DL+A G +EY+DT EEET MI+MT  D + A ++    Y  TYTHCEIHPS
Sbjct: 635  DDYEVFGWQDLIANGIVEYVDTLEEETVMIAMT-PDYLTAGVN----YCRTYTHCEIHPS 689

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 690  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTT 749

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN IVAIA Y+GYNQEDS+IMN+ +IDRG FRS+F+RSYRD+E   
Sbjct: 750  RSMEYLRFRELPAGINTIVAIASYTGYNQEDSIIMNRGAIDRGLFRSVFYRSYRDQESSG 809

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 537
                +E F +P +    GM +  YDKLDDDGL  PGTRVSG D++IGKT  + +D +A G
Sbjct: 810  DFNSEEIFEKPSKETCSGMHNAMYDKLDDDGLVAPGTRVSGGDIVIGKTALLPEDADALG 869

Query: 538  QAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
              + R+ +RD S  LR SE+G+VDQVLLT + +G +F KVRVRSVRIPQIGDKF+SRHGQ
Sbjct: 870  DTNKRFVKRDASTGLRSSESGIVDQVLLTVSQEGYKFTKVRVRSVRIPQIGDKFASRHGQ 929

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 930  KGTCGITYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 989

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D +TV  IS  L   GY +RG E +YNG TGR+L   +FLGPTYYQRLKHMVDDKIH+
Sbjct: 990  FNDTLTVQKISSLLSDYGYHLRGNEVLYNGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHA 1049

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+Q LTRQP +GR+RDGGLRFGEMERDC I+HGA+ FL+ERL+D SD Y VH+C  
Sbjct: 1050 RARGPLQNLTRQPMQGRARDGGLRFGEMERDCQISHGAAQFLRERLYDASDPYIVHMCNL 1109

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            CGL+A+ANL+ +++EC+GC+NKT I QV IPYACKLLFQELM+M++APR++++
Sbjct: 1110 CGLVAVANLRNDTYECKGCRNKTRISQVRIPYACKLLFQELMSMSLAPRIMSR 1162


>gi|448519935|ref|XP_003868181.1| RNA polymerase II subunit B150 [Candida orthopsilosis Co 90-125]
 gi|380352520|emb|CCG22746.1| RNA polymerase II subunit B150 [Candida orthopsilosis]
          Length = 1228

 Score = 1169 bits (3025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/870 (64%), Positives = 676/870 (77%), Gaps = 44/870 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 353  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 412

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 413  LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 472

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 473  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 532

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PI  FL +WG E  E+  P+  P AT++FVNG WVG+HR+P  LV  
Sbjct: 533  SLMSCISVGTPSEPISSFLRDWGLEPLEDYVPSNSPDATRVFVNGVWVGVHREPASLVDY 592

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRR  D++ EV ++RDIR KEL+I+TD GR  RPLFIV+       K  L ++K  +
Sbjct: 593  MRDLRRNGDISPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLRKEHV 652

Query: 293  IALQQRESPEDG-------GWHDLVAKGFIEYIDTEEEETTMISMTINDL---------- 335
              L   ES  DG        W  LV +G +EY+D EEEET MI+MT +DL          
Sbjct: 653  NQL--LESSYDGLDDEPTYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTET 710

Query: 336  VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
             Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 711  QQQDLQMEEQELDPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 770

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIAC
Sbjct: 771  QSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIAC 830

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 831  YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGT 890

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
            Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+V
Sbjct: 891  YEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIV 950

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD
Sbjct: 951  DQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPD 1010

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGF
Sbjct: 1011 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGF 1070

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLR
Sbjct: 1071 EVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLR 1130

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL+  IANLKKN FECR CKNKT
Sbjct: 1131 FGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMTVIANLKKNQFECRSCKNKT 1190

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            +I Q+HIPYA KLLFQELMAM I PR+ T+
Sbjct: 1191 NIYQIHIPYAAKLLFQELMAMNITPRLYTE 1220


>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
 gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
          Length = 1193

 Score = 1169 bits (3023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/847 (65%), Positives = 660/847 (77%), Gaps = 12/847 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  + CETKKA++ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR 
Sbjct: 353  LLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRS 412

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR L +++R   QK ++   D  L   +K  TIT GL YSLATGNWG Q  A  +RAGV
Sbjct: 413  LFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGV 472

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNL
Sbjct: 473  SQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNL 532

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EE+SP+ I  ATKIFVNG WVGIHR+P+ L+ T
Sbjct: 533  ALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTT 592

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            L++LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L +KKR I  L++ 
Sbjct: 593  LKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEA 652

Query: 299  ESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
                +   W DLV  G +E ID+ EEET+MI+M   DL          Y DT+THCEIHP
Sbjct: 653  ADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSG------GYCDTHTHCEIHP 706

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            ++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVT
Sbjct: 707  AMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 766

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            TR+ME+L F +LPAGINAIVAI  YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E  
Sbjct: 767  TRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEAN 826

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEA 535
            +    +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P   D+ 
Sbjct: 827  LDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDL 886

Query: 536  QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
                 +Y +RD S  LR SETG+VDQV+L+ N+DG +FVK+R+RSVR+PQIGDKF+SRHG
Sbjct: 887  DASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHG 946

Query: 596  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
            QKGT+G+ Y QEDMP+T EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDAT
Sbjct: 947  QKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDAT 1006

Query: 656  PFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
            PF D V V  IS  L + GY +RG E MYNGHTG++LT  IF GPTYYQRLKHMVDDKIH
Sbjct: 1007 PFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIH 1066

Query: 715  SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 774
            SR RGP+Q++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC 
Sbjct: 1067 SRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCN 1126

Query: 775  HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQS 834
            +CGLI +ANL+ NSFEC+ C+NKT +  V IPYACKLLFQELM+M+IAPR++ K    + 
Sbjct: 1127 NCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPRQSKR 1186

Query: 835  KDHKKKG 841
              H+ + 
Sbjct: 1187 SKHQSEA 1193


>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
 gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
          Length = 1224

 Score = 1168 bits (3021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/861 (64%), Positives = 672/861 (78%), Gaps = 34/861 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ 
Sbjct: 358  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKT 417

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 418  LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMTSRAGV 477

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 478  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 537

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 538  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 597

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR +EL+I+TD GR  RPLFIV+       + L ++K  + 
Sbjct: 598  LRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVDDDDDLGHKELRVRKGHVA 657

Query: 294  ALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             L   E  + +GG        W  L+ +G +EYID EEEE+ +I+M   DL      PE 
Sbjct: 658  RLMATEYQDIEGGFEDVEEYTWTSLLNEGLVEYIDAEEEESILIAMQPEDLDPVSDEPEA 717

Query: 345  A---------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
                            +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 718  IPDVETDTAKRIRAVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 777

Query: 390  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
            MG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 778  MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQED 837

Query: 450  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
            S+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HGSYDKLDDDG
Sbjct: 838  SMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDG 897

Query: 510  LAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTN 567
            L  PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN
Sbjct: 898  LISPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTN 957

Query: 568  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
             DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAI
Sbjct: 958  QDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAI 1017

Query: 628  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
            PSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHT
Sbjct: 1018 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHT 1077

Query: 688  GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
            G++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1078 GKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDC 1137

Query: 748  MIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIP 806
            MIAHGA+ FLKERL + SDA+RVHVC  CGL+  IA L  N FEC+GC NK DI Q+ IP
Sbjct: 1138 MIAHGAAAFLKERLMEASDAFRVHVCGICGLMTVIAKLNHNQFECKGCDNKIDIYQIRIP 1197

Query: 807  YACKLLFQELMAMAIAPRMLT 827
            YA KLLFQELMAM I PR+ T
Sbjct: 1198 YAAKLLFQELMAMNITPRLYT 1218


>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
          Length = 1233

 Score = 1168 bits (3021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/845 (65%), Positives = 667/845 (78%), Gaps = 28/845 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT +  +TKKA++ GYI+H+LL+C+L R  EDDRDHYG KRLDLAGPLLGGLFRM
Sbjct: 395  VLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRM 454

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT+DV AY+QKC+D+G+D NL  AIK++ +T GL+YSLATGNWG    A +RAGVS
Sbjct: 455  LFRKLTKDVLAYLQKCIDDGRDFNLASAIKSRVVTDGLRYSLATGNWGDRKDA-SRAGVS 513

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLN+P+GREGK AKPRQLHN+ WG +CPAETPEGQA GLVKNLA
Sbjct: 514  QVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLA 573

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVK 238
            LM Y++VGS   PILEFLEEW  EN EEISP  I  P  TKIFVNG WVG+HRDP  L  
Sbjct: 574  LMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLES 633

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA---- 294
            TLR LRR++D++ EV VVRDI+ KELR+YTD GR  RPL IVE    + + R   A    
Sbjct: 634  TLRSLRRQIDIDPEVSVVRDIKEKELRVYTDAGRVCRPLLIVEAASTVTRVRSQEATFQE 693

Query: 295  LQQRES------PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD 348
            L+ R+S        D GW  L+ KG +E IDTEEEET MI+M  +DL        E Y+ 
Sbjct: 694  LRLRKSHVQKLVNGDLGWTQLLVKGLVELIDTEEEETAMIAMIPSDL-------NEPYSS 746

Query: 349  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 408
            TYTHCEIHPS+ILG+C SIIPFPDHNQSPRNTYQSAMGKQAMGIY +N+Q RMDTL++VL
Sbjct: 747  TYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFQQRMDTLSHVL 806

Query: 409  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 468
            +YPQKPL TTRAMEHLHFR+LP+G+NAIVAI CY+GYNQEDS+IMNQ++IDRG FRS F+
Sbjct: 807  HYPQKPLATTRAMEHLHFRELPSGVNAIVAIMCYTGYNQEDSLIMNQAAIDRGLFRSTFY 866

Query: 469  RSYRDEEKKMGTL-----VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 523
            R+Y D+E   G       ++E F RP+R     MRHGSY+K+D DGL  PG RVSG D++
Sbjct: 867  RTYSDKEHNKGIWDSPEYLQETFERPNRDECTAMRHGSYEKIDSDGLVSPGVRVSGSDIL 926

Query: 524  IGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 583
            +GKT+P      + + S  ++RD S ++R +E+G+VDQV+L+TN DG++F KVR R++RI
Sbjct: 927  VGKTSPSWHSGLKAERSGPSKRDSSTTMRPNESGLVDQVMLSTNQDGMKFTKVRTRTIRI 986

Query: 584  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 643
            PQIGDKF+SRHGQKGT+GMTY QEDMPWT +G++PDIIVNPHAIPSRMTIG L+EC+  K
Sbjct: 987  PQIGDKFASRHGQKGTIGMTYAQEDMPWTRDGVSPDIIVNPHAIPSRMTIGHLVECLQSK 1046

Query: 644  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
            V A  GKEGDATPFTDV+VD I+  LH+ GY   G E MY+GHTGR + A +FLGPT+YQ
Sbjct: 1047 VGALTGKEGDATPFTDVSVDQIAGVLHELGYHRHGNEVMYSGHTGRIIHAKVFLGPTFYQ 1106

Query: 704  RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFD 763
            RLKH+VDDKIH+R RGPV +LTRQP EGR+RDGGLR GEMERDC+I+HG S FL++R+F 
Sbjct: 1107 RLKHLVDDKIHARSRGPVTMLTRQPMEGRARDGGLRMGEMERDCLISHGVSSFLRDRMFA 1166

Query: 764  QSDAYRVHVCEHCGLIAIANLKKNSFEC--RGCKN-KTDIVQVHIPYACKLLFQELMAMA 820
             SD Y +HVC  CGLIA A+L+K +F C  + C++  + IV+VHIPYACKLLFQELMAM 
Sbjct: 1167 NSDPYSIHVCTLCGLIAHADLRKRAFWCNNKDCQHANSSIVRVHIPYACKLLFQELMAMC 1226

Query: 821  IAPRM 825
            IAPR+
Sbjct: 1227 IAPRI 1231


>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1158

 Score = 1168 bits (3021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/830 (67%), Positives = 661/830 (79%), Gaps = 11/830 (1%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPHVG  DFCET+KAY+ GY++HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR L
Sbjct: 328  LPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGL 387

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
            FR LT+++R Y QK +D GKD NL+ AI+++ IT GLKYSLATGNWG Q  A   R GVS
Sbjct: 388  FRNLTKEIRLYAQKFIDKGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVS 447

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 448  QVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLA 507

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS   PILEFLEEW  EN EEI+P+ I +  KIFVNGCWVGIH  P+ L+ TL
Sbjct: 508  LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTL 567

Query: 241  RRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            R+LRR+VDV  +EV ++RD R +E+RIYTD GR  RPL IVEK +LL+K R  I L + +
Sbjct: 568  RKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLK-RSHIELLKDK 626

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
            +     W DLV  G +EYIDT EEET MI+M       A +     Y  T+THCEIHPS+
Sbjct: 627  AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMG-----PAEMQAAVNYCKTHTHCEIHPSM 681

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y++N+  RMDTLA VLYYPQKPLV TR
Sbjct: 682  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATR 741

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L FR+LPAGINAIVAIA Y+GYNQEDSVI+N+S+I RGFFRS F+R+Y+D+E + G
Sbjct: 742  SMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHG 801

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 537
              ++E F +P+  N  GMRH  YDKLDDDGL  PGTRVSG+DV+IGKT   P ++DE +G
Sbjct: 802  MDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEG 861

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
               RYT+RD S+ +R SE G+VDQV++T N +G +F KVRVR+ + PQ+GDKF+SRHGQK
Sbjct: 862  GQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRHGQK 921

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF
Sbjct: 922  GTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPF 981

Query: 658  TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
             D V V  IS  L + GYQ  G E MYNG TGR+L + IFLGPTYYQRLKHMVDDKIHSR
Sbjct: 982  NDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSR 1041

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
             RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF  SD Y+V+VC  C
Sbjct: 1042 SRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLC 1101

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            GLIAIA+ +  ++ECR CKN T I  V +PYACKLLFQELM+M+IAPRM+
Sbjct: 1102 GLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMM 1151


>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1304

 Score = 1167 bits (3020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/830 (67%), Positives = 661/830 (79%), Gaps = 11/830 (1%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPHVG  DFCET+KAY+ GY++HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR L
Sbjct: 474  LPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGL 533

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
            FR LT+++R Y QK +D GKD NL+ AI+++ IT GLKYSLATGNWG Q  A   R GVS
Sbjct: 534  FRNLTKEIRLYAQKFIDKGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVS 593

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 594  QVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLA 653

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS   PILEFLEEW  EN EEI+P+ I +  KIFVNGCWVGIH  P+ L+ TL
Sbjct: 654  LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTL 713

Query: 241  RRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            R+LRR+VDV  +EV ++RD R +E+RIYTD GR  RPL IVEK +LL+K R  I L + +
Sbjct: 714  RKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLK-RSHIELLKDK 772

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
            +     W DLV  G +EYIDT EEET MI+M       A +     Y  T+THCEIHPS+
Sbjct: 773  AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMG-----PAEMQAAVNYCKTHTHCEIHPSM 827

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y++N+  RMDTLA VLYYPQKPLV TR
Sbjct: 828  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATR 887

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L FR+LPAGINAIVAIA Y+GYNQEDSVI+N+S+I RGFFRS F+R+Y+D+E + G
Sbjct: 888  SMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHG 947

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 537
              ++E F +P+  N  GMRH  YDKLDDDGL  PGTRVSG+DV+IGKT   P ++DE +G
Sbjct: 948  MDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEG 1007

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
               RYT+RD S+ +R SE G+VDQV++T N +G +F KVRVR+ + PQ+GDKF+SRHGQK
Sbjct: 1008 GQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRHGQK 1067

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF
Sbjct: 1068 GTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPF 1127

Query: 658  TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
             D V V  IS  L + GYQ  G E MYNG TGR+L + IFLGPTYYQRLKHMVDDKIHSR
Sbjct: 1128 NDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSR 1187

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
             RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF  SD Y+V+VC  C
Sbjct: 1188 SRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLC 1247

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            GLIAIA+ +  ++ECR CKN T I  V +PYACKLLFQELM+M+IAPRM+
Sbjct: 1248 GLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMM 1297


>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
          Length = 1195

 Score = 1167 bits (3019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/845 (65%), Positives = 657/845 (77%), Gaps = 11/845 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  + CETKKA++ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR 
Sbjct: 352  LLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRA 411

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR L +++R   QK ++   D  L   +K  TIT GL YSLATGNWG Q  A  +RAGV
Sbjct: 412  LFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLAYSLATGNWGDQKKAHQSRAGV 471

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNL
Sbjct: 472  SQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNL 531

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EE+SP+ I  ATKIFVNG WVGIHR+P+ L+ T
Sbjct: 532  ALMAYISVGSLPEPILEFLEEWSMENLEEVSPSSISDATKIFVNGSWVGIHREPDQLMTT 591

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            L++LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L +KK  I  L+  
Sbjct: 592  LKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEDQKLALKKTHIDQLKDV 651

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +      W DLV  G +E ID+ EEET+MI+M   DL          Y DT+THCEIHP+
Sbjct: 652  DEANKFSWSDLVGGGVVELIDSMEEETSMIAMMPEDLRTG------GYCDTHTHCEIHPA 705

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 706  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTT 765

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L F +LPAGINAIVAI  YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E  +
Sbjct: 766  RSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANL 825

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
                +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P   D+  
Sbjct: 826  DNANEELIEKPTREKCSGMRHALYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLD 885

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
                +Y +RD S  LR SETG+VDQV+L+ N DG +FVK+R+RSVR+PQIGDKF+SRHGQ
Sbjct: 886  ATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQ 945

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT+G+ Y QEDMP+T EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATP
Sbjct: 946  KGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATP 1005

Query: 657  FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F D V V  IS  L + GY +RG E MYNGHTG++LT  IF GPTYYQRLKHMVDDKIHS
Sbjct: 1006 FNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHS 1065

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+Q++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC +
Sbjct: 1066 RARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNN 1125

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSK 835
            CGLI +ANL+ NSFEC+ C+NKT +  V IPYACKLLFQELM+M+IAPR++ K  T +  
Sbjct: 1126 CGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPQTSKRP 1185

Query: 836  DHKKK 840
              + K
Sbjct: 1186 TKQPK 1190


>gi|365758370|gb|EHN00218.1| Rpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1224

 Score = 1167 bits (3018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/859 (64%), Positives = 669/859 (77%), Gaps = 32/859 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPL+  LF+ 
Sbjct: 360  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLMAQLFKT 419

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 420  LFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 479

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 480  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 539

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 540  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 599

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  + 
Sbjct: 600  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHVG 659

Query: 294  ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             L   E           E+  W  L+ +G +EYID EEEE+ +I+M   DL       E 
Sbjct: 660  KLMATEYQDIEGGFEDAEEYTWSTLLNEGLVEYIDAEEEESILIAMQPEDLEPNEGSEEN 719

Query: 345  A-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                          +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 720  DLDVDPAKRIRVARHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 779

Query: 392  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
            +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 780  VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 839

Query: 452  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
            IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 840  IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 899

Query: 512  PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
             PG RVSGEDVIIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN D
Sbjct: 900  APGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD 959

Query: 570  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
            GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 960  GLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPS 1019

Query: 630  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
            RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 1020 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 1079

Query: 690  RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
            +L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1080 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMI 1139

Query: 750  AHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYA 808
            AHGA+ FLKERL + SDA+RVH+C  CGL+  IA L  N FEC+GC NK DI Q+HIPYA
Sbjct: 1140 AHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYA 1199

Query: 809  CKLLFQELMAMAIAPRMLT 827
             KLLFQELMAM I PR+ T
Sbjct: 1200 AKLLFQELMAMNITPRLYT 1218


>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
            polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
          Length = 1196

 Score = 1166 bits (3017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/830 (67%), Positives = 661/830 (79%), Gaps = 11/830 (1%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPHVG  DFCET+KAY+ GY++HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR L
Sbjct: 366  LPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGL 425

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
            FR LT+++R Y QK +D GKD NL+ AI+++ IT GLKYSLATGNWG Q  A   R GVS
Sbjct: 426  FRNLTKEIRLYAQKFIDKGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVS 485

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 486  QVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLA 545

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS   PILEFLEEW  EN EEI+P+ I +  KIFVNGCWVGIH  P+ L+ TL
Sbjct: 546  LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTL 605

Query: 241  RRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            R+LRR+VDV  +EV ++RD R +E+RIYTD GR  RPL IVEK +LL+K R  I L + +
Sbjct: 606  RKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLK-RSHIELLKDK 664

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
            +     W DLV  G +EYIDT EEET MI+M       A +     Y  T+THCEIHPS+
Sbjct: 665  AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMG-----PAEMQAAVNYCKTHTHCEIHPSM 719

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y++N+  RMDTLA VLYYPQKPLV TR
Sbjct: 720  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATR 779

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L FR+LPAGINAIVAIA Y+GYNQEDSVI+N+S+I RGFFRS F+R+Y+D+E + G
Sbjct: 780  SMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHG 839

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 537
              ++E F +P+  N  GMRH  YDKLDDDGL  PGTRVSG+DV+IGKT   P ++DE +G
Sbjct: 840  MDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEG 899

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
               RYT+RD S+ +R SE G+VDQV++T N +G +F KVRVR+ + PQ+GDKF+SRHGQK
Sbjct: 900  GQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRHGQK 959

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF
Sbjct: 960  GTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPF 1019

Query: 658  TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
             D V V  IS  L + GYQ  G E MYNG TGR+L + IFLGPTYYQRLKHMVDDKIHS+
Sbjct: 1020 NDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSQ 1079

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
             RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF  SD Y+V+VC  C
Sbjct: 1080 SRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLC 1139

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            GLIAIA+ +  ++ECR CKN T I  V +PYACKLLFQELM+M+IAPRM+
Sbjct: 1140 GLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMM 1189


>gi|363752349|ref|XP_003646391.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
 gi|356890026|gb|AET39574.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1222

 Score = 1166 bits (3017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/862 (64%), Positives = 676/862 (78%), Gaps = 35/862 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 355  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRD+  ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  A  +RAGV
Sbjct: 415  LFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGV 474

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T
Sbjct: 535  SLMSCISVGTDPVPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDT 594

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-------QRLLIKKRDI 292
            +R+LRR+ D+  EV +VRDIR KEL+I+TD GR  RPLF+V +       + L ++K  I
Sbjct: 595  IRKLRRKGDITAEVSIVRDIREKELKIFTDAGRVYRPLFVVAESLHNDGHKELKVRKGHI 654

Query: 293  IALQQRESPE-DGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQAR 339
              L   E  + +GG         W  L+ +G +EYID EEEET +I+M   DL   V   
Sbjct: 655  RKLMLTEYQDIEGGFEEEDINYTWTSLLNEGIVEYIDAEEEETILIAMQQEDLDPNVPQT 714

Query: 340  LHPEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
              P +            +++T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 715  ADPSDELDPARRIKAIHHSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQ 774

Query: 389  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
            AMG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQE
Sbjct: 775  AMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQE 834

Query: 449  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
            DS+IMNQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDD
Sbjct: 835  DSMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDD 894

Query: 509  GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
            GL  PG RVSG+D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TT
Sbjct: 895  GLIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITT 954

Query: 567  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
            N +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHA
Sbjct: 955  NQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTSEGVVPDLIINPHA 1014

Query: 627  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
            IPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGH
Sbjct: 1015 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGH 1074

Query: 687  TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
            TG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERD
Sbjct: 1075 TGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1134

Query: 747  CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHI 805
            CMIAHGA+ FLKERL + SDA+RVH+C  CGL+  +A LK N FECRGCKNK DI QVHI
Sbjct: 1135 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIFQVHI 1194

Query: 806  PYACKLLFQELMAMAIAPRMLT 827
            PYA KLLFQELMAM IAPR+ T
Sbjct: 1195 PYAAKLLFQELMAMNIAPRLYT 1216


>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
 gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
          Length = 1190

 Score = 1165 bits (3015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/829 (67%), Positives = 654/829 (78%), Gaps = 13/829 (1%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPHVG  DFCETKKAY+ GY++HRLLL A+GRR  DDRDHYGNKRLDLAGPL       L
Sbjct: 372  LPHVGISDFCETKKAYFLGYMVHRLLLAAMGRRELDDRDHYGNKRLDLAGPL------GL 425

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
            F+ L ++V+   Q+ ++   D NL+  ++   +T GL+YSLATGNWG Q  A  TRAGVS
Sbjct: 426  FKNLLKEVKMVAQRYINKTGDFNLELCVRTGILTKGLQYSLATGNWGDQKKAHQTRAGVS 485

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYA+TLSHLRRLNSPIGREGKLAKPRQLHN+ WGM+CPAETPEGQA GLVKNLA
Sbjct: 486  QVLNRLTYAATLSHLRRLNSPIGREGKLAKPRQLHNTLWGMICPAETPEGQAVGLVKNLA 545

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS   PILEFLEEW  E  EE++P+ I   TKIFVNG WVGIHR+P+ L+ TL
Sbjct: 546  LMAYISVGSQQEPILEFLEEWSMETLEEVAPSAISATTKIFVNGAWVGIHREPQQLMATL 605

Query: 241  RRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            R+LRR++D V +EV +VRDIR +E+RIYTD GR  RPL IVE QRLL+KK  I  L++R 
Sbjct: 606  RKLRRQMDIVVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQRLLLKKNHIENLKRRN 665

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
                 GW +LVA   +EYIDT EEET M++MT +DL    +     Y DTYTHCEIHPS+
Sbjct: 666  ESNGHGWSELVANSIVEYIDTMEEETIMLAMTPDDLQDRGV----GYCDTYTHCEIHPSM 721

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY TN+  RMDTLA+VL+YPQKPLVTTR
Sbjct: 722  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTTNFHVRMDTLAHVLWYPQKPLVTTR 781

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L F +LPAGIN+IVAI  Y+GYNQEDSVIMN SSIDRG FRS+F+RSYRD+E    
Sbjct: 782  SMEYLRFNELPAGINSIVAILSYTGYNQEDSVIMNSSSIDRGMFRSIFYRSYRDQESSRE 841

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
               +E   +P R    GMR+  Y KLDDDG+  PGTRVSG+DVIIGKT  +   +     
Sbjct: 842  ARNEETIEKPTRQICQGMRNAVYHKLDDDGIVSPGTRVSGDDVIIGKTIMLEDTDDSSTT 901

Query: 540  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
             R +++D S  LR SETG+VDQV+L+ NADG +FVKVRVRS+RIPQIGDKF+SRHGQKGT
Sbjct: 902  KRSSKKDASTFLRASETGIVDQVMLSVNADGNKFVKVRVRSIRIPQIGDKFASRHGQKGT 961

Query: 600  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
            +GM Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D
Sbjct: 962  IGMIYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANRGEIGDATPFND 1021

Query: 660  -VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
             V V  +S  L + GY +RG E MY+G TGR+L   +F+GPTYYQRLKHMVDDKIHSR R
Sbjct: 1022 SVNVQKVSSLLQEYGYHLRGNEVMYSGFTGRKLNTQVFIGPTYYQRLKHMVDDKIHSRAR 1081

Query: 719  GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
            GP+Q++ RQP EGRSRDGGLRFGEMERDC IAHGA+HFLKERLF+ SD Y V+VC+ CG+
Sbjct: 1082 GPLQMMARQPMEGRSRDGGLRFGEMERDCQIAHGAAHFLKERLFEVSDPYTVYVCKICGI 1141

Query: 779  IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            IAIAN +   +ECR C+NKT I +V+IPYACKLLFQEL +M IAPRM T
Sbjct: 1142 IAIANSRTGHYECRTCRNKTKISRVNIPYACKLLFQELTSMCIAPRMKT 1190


>gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
          Length = 1224

 Score = 1165 bits (3014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/859 (64%), Positives = 670/859 (77%), Gaps = 32/859 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 360  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 419

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 420  LFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 479

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 480  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 539

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 540  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 599

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 600  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIA 659

Query: 294  ALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             L   E  + +GG        W  L+ +G +EYID EEEE+ +I+M   DL  A  + E 
Sbjct: 660  KLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEN 719

Query: 345  A-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                          +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 720  DLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 779

Query: 392  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
            +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 780  VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 839

Query: 452  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
            IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 840  IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 899

Query: 512  PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
             PG RVSGEDVIIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN D
Sbjct: 900  APGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD 959

Query: 570  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
            GL+FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T     PD+I+NPHAIPS
Sbjct: 960  GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTRRRYVPDLIINPHAIPS 1019

Query: 630  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
            RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 1020 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 1079

Query: 690  RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
            +L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1080 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMI 1139

Query: 750  AHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYA 808
            AHGA+ FLKERL + SDA+RVH+C  CGL+  IA L  N FEC+GC NK DI Q+HIPYA
Sbjct: 1140 AHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYA 1199

Query: 809  CKLLFQELMAMAIAPRMLT 827
             KLLFQELMAM I PR+ T
Sbjct: 1200 AKLLFQELMAMNITPRLYT 1218


>gi|190346609|gb|EDK38735.2| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1291

 Score = 1165 bits (3013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/875 (64%), Positives = 677/875 (77%), Gaps = 47/875 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 409  LLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRI 468

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 469  LFKKLTKDIYNYMQRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 528

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 529  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 588

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 589  SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 648

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I
Sbjct: 649  MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHI 708

Query: 293  IALQQRESPEDG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
              L   E  E+             GW  LV  G +EY+D EEEET MI+MT  DL     
Sbjct: 709  HKLLNAEYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKS 768

Query: 336  -----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
                  Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQS
Sbjct: 769  SLTATQQKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQS 828

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAI
Sbjct: 829  PRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAI 888

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ 
Sbjct: 889  VAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLR 948

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHS 554
            ++HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +
Sbjct: 949  LKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRST 1008

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E+G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +
Sbjct: 1009 ESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQ 1068

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            GI PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GY
Sbjct: 1069 GIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGY 1128

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MY+GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSR
Sbjct: 1129 QSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1188

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR 
Sbjct: 1189 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRS 1248

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            CKNKT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1249 CKNKTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1283


>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
          Length = 1921

 Score = 1165 bits (3013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/835 (67%), Positives = 664/835 (79%), Gaps = 11/835 (1%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPHVG  DFCET+KAY+ GY++HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR L
Sbjct: 1091 LPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGL 1150

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
            FR LT+++R Y QK +D GKD NL+ AI+++ IT GLKYSLATGNWG Q  A   R GVS
Sbjct: 1151 FRNLTKEIRLYAQKFIDKGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVS 1210

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 1211 QVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGSAVGLVKNLA 1270

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS   PILEFLEEW  EN EEI+P+ I +  KIFVNGCWVGIH  P+ L+ TL
Sbjct: 1271 LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHNSPDHLMVTL 1330

Query: 241  RRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            R+LRR+VDV  +EV +VRD R +E+RIYTD GR  RPL IVEK +LL+K+  I  L+ + 
Sbjct: 1331 RKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLKRSHIEFLKDK- 1389

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
            +     W DLV  G +EYIDT EEET MI+M   ++ QA +H    Y  T+THCEIHPS+
Sbjct: 1390 AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEM-QAAVH----YCKTHTHCEIHPSM 1444

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y++N+  RMDTLA VLYYPQKPLV TR
Sbjct: 1445 ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATR 1504

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L FR+LPAGINAIVAIA Y+GYNQEDSVI+N+S+I RGFFRS F+R+Y+D+E + G
Sbjct: 1505 SMEYLRFRELPAGINAIVAIATYTGYNQEDSVILNESAIQRGFFRSEFYRTYKDQEARHG 1564

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 537
               +E F +P+     GMRH  YDKLDDDGL  PGTRVSG+DV+IGKT   P ++DE +G
Sbjct: 1565 MDQEEVFEKPNPQQCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEG 1624

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
               RYT+RD S+ +R SE G+VDQV++T N +G +F KVRVR+ + PQ+GDKF+SRHGQK
Sbjct: 1625 GQRRYTKRDASVFMRRSEYGIVDQVMITWNNEGNKFCKVRVRTTKTPQVGDKFASRHGQK 1684

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF
Sbjct: 1685 GTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPF 1744

Query: 658  TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
             D V V  IS  L + GYQ  G E MYNG TGR+L + IFLGPTYYQRLKHMVDDKIHSR
Sbjct: 1745 NDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSR 1804

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
             RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF  SD Y+V+VC  C
Sbjct: 1805 ARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLC 1864

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDT 831
            GLIAIA+ +  ++ECR CKN T I  V +PYACKLLFQELM+M+IAPRM+    T
Sbjct: 1865 GLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMMVTGTT 1919


>gi|50549809|ref|XP_502376.1| YALI0D03718p [Yarrowia lipolytica]
 gi|49648244|emb|CAG80564.1| YALI0D03718p [Yarrowia lipolytica CLIB122]
          Length = 1229

 Score = 1164 bits (3012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/869 (64%), Positives = 678/869 (78%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KAY+ GY++HR+LL ALGR+  DDRDH+G KRLDLAGPL+ G+FRM
Sbjct: 352  LLPHITQEEGFETRKAYFLGYMVHRMLLVALGRKEPDDRDHFGKKRLDLAGPLMAGIFRM 411

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+ KCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 412  LFKKLTKDIYRYMLKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGV 471

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 472  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 531

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ ++PI+ FL+EWG E  E+  P     +T++FVNG WVG+HRD   L   
Sbjct: 532  SLMSCISVGTPSFPIINFLDEWGMEPLEDYVPHTHTTSTRVFVNGVWVGVHRDATQLTDM 591

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            ++ LRR  D+ +EV ++RDIR KE+RI+TD GR  RPLF+VE       K  L+++K  I
Sbjct: 592  IKSLRRMGDIESEVSIIRDIREKEIRIFTDAGRVYRPLFVVENNPDAERKGELVLQKDHI 651

Query: 293  IALQQRESPE------------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
              LQQ+ + +            + GW+ LV  G IEYID EEEET MI+MT  DL     
Sbjct: 652  YQLQQQMAEQAETEGDEGKGDKNTGWNWLVDNGVIEYIDGEEEETVMIAMTPEDLEFSRQ 711

Query: 336  VQARLH-PEE-------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            +QA +  PE+              ++ T+THCEIHPS+ILG+ ASIIPFPDHNQSPRNTY
Sbjct: 712  MQAGVEMPEDELDPARRVKPAYNPHSHTWTHCEIHPSMILGILASIIPFPDHNQSPRNTY 771

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI C
Sbjct: 772  QSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILC 831

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSV+MNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ M+HG+
Sbjct: 832  YSGYNQEDSVVMNQSSIDRGLFRSLFFRSYMDQERRVGMSVVEEFEKPTRADTLRMKHGT 891

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
            YDKLDDDGL  PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+V
Sbjct: 892  YDKLDDDGLVCPGVRVSGEDIIIGKTAPIPPDAEELGQRTKYHTKRDASTPLRSTENGIV 951

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVLLTTN +GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ EG+ PD
Sbjct: 952  DQVLLTTNQEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGVVPD 1011

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            II+NPHAIPSRMT+  LIEC++ KV+   G EGDATPFTDVTVD ISK L   GYQ RGF
Sbjct: 1012 IIINPHAIPSRMTVAHLIECLLSKVSCLSGLEGDATPFTDVTVDAISKLLRSHGYQSRGF 1071

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MY+GHTG+++ A  FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGRSR+GGLR
Sbjct: 1072 EVMYHGHTGKKIMAQCFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRSREGGLR 1131

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG-LIAIANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGA+ FLKERL + SDA+R+HVC  CG +  IANLKKN FECR C+NKT
Sbjct: 1132 FGEMERDCMIAHGAAAFLKERLMEASDAFRIHVCGVCGSMNVIANLKKNQFECRSCRNKT 1191

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QV IPYA KLLFQELMAM IAPR+ +
Sbjct: 1192 KIYQVQIPYAAKLLFQELMAMNIAPRLFS 1220


>gi|223590257|sp|A5DHT2.3|RPB2_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
          Length = 1236

 Score = 1164 bits (3012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/875 (64%), Positives = 677/875 (77%), Gaps = 47/875 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 354  LLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRI 413

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 414  LFKKLTKDIYNYMQRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 473

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 474  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 533

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 534  SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 593

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I
Sbjct: 594  MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHI 653

Query: 293  IALQQRESPEDG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
              L   E  E+             GW  LV  G +EY+D EEEET MI+MT  DL     
Sbjct: 654  HKLLNAEYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKS 713

Query: 336  -----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
                  Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQS
Sbjct: 714  SLTATQQKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQS 773

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAI
Sbjct: 774  PRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAI 833

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ 
Sbjct: 834  VAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLR 893

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHS 554
            ++HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +
Sbjct: 894  LKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRST 953

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E+G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +
Sbjct: 954  ESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQ 1013

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            GI PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GY
Sbjct: 1014 GIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGY 1073

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MY+GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSR
Sbjct: 1074 QSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1133

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR 
Sbjct: 1134 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRS 1193

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            CKNKT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1194 CKNKTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1228


>gi|45198922|ref|NP_985951.1| AFR404Cp [Ashbya gossypii ATCC 10895]
 gi|51701974|sp|Q753Q4.1|RPB2_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|44984951|gb|AAS53775.1| AFR404Cp [Ashbya gossypii ATCC 10895]
 gi|374109181|gb|AEY98087.1| FAFR404Cp [Ashbya gossypii FDAG1]
          Length = 1222

 Score = 1164 bits (3010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/862 (64%), Positives = 674/862 (78%), Gaps = 35/862 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 355  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRD+  ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  A  +RAGV
Sbjct: 415  LFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGV 474

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T
Sbjct: 535  SLMSCISVGTDPVPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDT 594

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDI 292
            +R+LRR+ D+  EV +VRDIR KEL+I+TD GR  RPLF+V   +       L ++K  I
Sbjct: 595  IRKLRRKGDITAEVSIVRDIREKELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHI 654

Query: 293  IALQQRESPE-DGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQAR 339
              L   E  + +GG         W  L+  G +EYID EEEET +I+M   DL   V   
Sbjct: 655  RKLMLTEYQDIEGGFEDEDINYTWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQT 714

Query: 340  LHPEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
            + P +            +++T+THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQ
Sbjct: 715  VDPSDELDPARRIKAIHHSNTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQ 774

Query: 389  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
            AMG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQE
Sbjct: 775  AMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQE 834

Query: 449  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
            DS+IMNQSSID G FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+Y+KLDDD
Sbjct: 835  DSMIMNQSSIDSGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDD 894

Query: 509  GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
            GL  PG RVSG+D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TT
Sbjct: 895  GLIAPGVRVSGDDIIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITT 954

Query: 567  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
            N +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHA
Sbjct: 955  NQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHA 1014

Query: 627  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
            IPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD ISK L + GYQ RGFE MYNGH
Sbjct: 1015 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISKLLREHGYQSRGFEVMYNGH 1074

Query: 687  TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
            TG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERD
Sbjct: 1075 TGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1134

Query: 747  CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHI 805
            CMIAHGA+ FLKERL + SDA+RVH+C  CGL+  +A LK N FECRGCKNK DI QVHI
Sbjct: 1135 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIYQVHI 1194

Query: 806  PYACKLLFQELMAMAIAPRMLT 827
            PYA KLLFQELMAM IAPR+ T
Sbjct: 1195 PYAAKLLFQELMAMNIAPRLYT 1216


>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
          Length = 1221

 Score = 1164 bits (3010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/862 (64%), Positives = 674/862 (78%), Gaps = 35/862 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 354  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 413

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRD+  ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  +  +RAGV
Sbjct: 414  LFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGV 473

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 474  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 533

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T
Sbjct: 534  SLMSCISVGTDPLPIITFLNEWGMEPLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDT 593

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDII 293
            +R+LRR+ D+  EV +VRDIR KEL+I+TD GR  RPLFIV+      ++ L +KK  + 
Sbjct: 594  IRKLRRKGDITPEVSIVRDIREKELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVR 653

Query: 294  ALQQRESPE-DGG----------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 342
             L   E  + +GG          W  L+ +G +EYID EEEET +I+M   DL  A L  
Sbjct: 654  KLMLTEYQDIEGGFDDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPV 713

Query: 343  EEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
             ++  D               +THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQ
Sbjct: 714  ADSEDDLDPARRIRAIHNSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQ 773

Query: 389  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
            AMG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQE
Sbjct: 774  AMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQE 833

Query: 449  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
            DS+IMNQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDD
Sbjct: 834  DSMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDD 893

Query: 509  GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
            GL  PG RVSG+D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TT
Sbjct: 894  GLIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITT 953

Query: 567  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
            N +GL+FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHA
Sbjct: 954  NQEGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHA 1013

Query: 627  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
            IPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGH
Sbjct: 1014 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGH 1073

Query: 687  TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
            TG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERD
Sbjct: 1074 TGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1133

Query: 747  CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHI 805
            CMIAHGA+ FLKERL + SDA+RVH+C  CGL++ +A LK N FECR CKNK DI QVHI
Sbjct: 1134 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHI 1193

Query: 806  PYACKLLFQELMAMAIAPRMLT 827
            PYA KLLFQELMAM IAPR+ T
Sbjct: 1194 PYAAKLLFQELMAMNIAPRLYT 1215


>gi|146418277|ref|XP_001485104.1| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1291

 Score = 1163 bits (3009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/875 (64%), Positives = 677/875 (77%), Gaps = 47/875 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 409  LLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRI 468

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 469  LFKKLTKDIYNYMQRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 528

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 529  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 588

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 589  SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 648

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I
Sbjct: 649  MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHI 708

Query: 293  IALQQRESPEDG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
              L   E  E+             GW  LV  G +EY+D EEEET MI+MT  DL     
Sbjct: 709  HKLLNAEYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKS 768

Query: 336  -----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
                  Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQS
Sbjct: 769  SLTATQQKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQS 828

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAI
Sbjct: 829  PRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAI 888

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ 
Sbjct: 889  VAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPLRSDTLR 948

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHS 554
            ++HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +
Sbjct: 949  LKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRST 1008

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E+G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +
Sbjct: 1009 ESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQ 1068

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            GI PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GY
Sbjct: 1069 GIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGY 1128

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MY+GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSR
Sbjct: 1129 QSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1188

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR 
Sbjct: 1189 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRS 1248

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            CKNKT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1249 CKNKTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1283


>gi|46277275|gb|AAS86828.1| RNA polymerase II second largest subunit, partial [Acer circinatum]
          Length = 580

 Score = 1163 bits (3009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/580 (97%), Positives = 573/580 (98%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ+T
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQST 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVEKQRLLIKKRDI ALQQRES E GGWH+LV+KGFIEYIDTEEEETTMISMTINDLVQA
Sbjct: 121 IVEKQRLLIKKRDIHALQQRESTEVGGWHELVSKGFIEYIDTEEEETTMISMTINDLVQA 180

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           RL+PE+AY+  YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 181 RLNPEDAYSGCYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 240

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
           FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 241 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 300

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 301 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRCNTMGMRHGSYDKLDDDGLAPPGTRVS 360

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKTTPI+QDEAQGQ+SRYTRRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRV
Sbjct: 361 GEDVIIGKTTPIAQDEAQGQSSRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRV 420

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 421 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 480

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLG
Sbjct: 481 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLG 540

Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
           PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL
Sbjct: 541 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 580


>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
 gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
          Length = 1224

 Score = 1162 bits (3006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/859 (65%), Positives = 675/859 (78%), Gaps = 32/859 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  E++KA++ GY+I+RLLLCAL RR +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 360  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKT 419

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLTRD+  Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 420  LFRKLTRDIFRYMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 479

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 480  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 539

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+   PI+ FL EWG E  E+  P   P+AT++FVNG W G+HR+P  L++T
Sbjct: 540  SLMSCISVGTDPMPIITFLSEWGMEPLEDYIPHQSPEATRVFVNGVWHGVHRNPARLMET 599

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDII 293
            LR LRR+ D+N EV +VRDIR KEL+I+TD GR  RPLFIV+      ++ L I+K  I 
Sbjct: 600  LRTLRRKGDINPEVSMVRDIREKELKIFTDAGRVYRPLFIVDDDETLNRKELRIRKGHIS 659

Query: 294  ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHP 342
             L   E           E+  W  L+  G +EYID EEEET +ISM   DL  VQ     
Sbjct: 660  KLMATEYQDIEGGFEDSEEYTWTSLLNDGLVEYIDAEEEETILISMQPEDLEPVQENTFN 719

Query: 343  EEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
            E+            +A T+THCE+HPS+ILGV ASIIPFPDHNQSPRNTYQ+AMGKQAMG
Sbjct: 720  EDDDDLARRIKATHHATTFTHCEVHPSMILGVAASIIPFPDHNQSPRNTYQAAMGKQAMG 779

Query: 392  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
            +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 780  VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 839

Query: 452  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
            IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 840  IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 899

Query: 512  PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
             PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQ+L+TTN D
Sbjct: 900  APGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQILITTNQD 959

Query: 570  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
            GL+FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 960  GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPS 1019

Query: 630  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
            RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 1020 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 1079

Query: 690  RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
            +L + IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1080 KLMSQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMI 1139

Query: 750  AHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYA 808
            AHGA+ FLKERL + SDA+RVH+C  CGL++ +A L  N FECRGC NK DI Q+HIPYA
Sbjct: 1140 AHGAAAFLKERLMEASDAFRVHICGICGLMSVVAKLNHNQFECRGCDNKIDIYQIHIPYA 1199

Query: 809  CKLLFQELMAMAIAPRMLT 827
             KLLFQELMAM I PR+ T
Sbjct: 1200 AKLLFQELMAMNITPRLYT 1218


>gi|46277289|gb|AAS86835.1| RNA polymerase II second largest subunit, partial [Camellia
           japonica]
          Length = 591

 Score = 1162 bits (3005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/591 (91%), Positives = 577/591 (97%)

Query: 147 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 206
           KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENF
Sbjct: 1   KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENF 60

Query: 207 EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 266
           EEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+
Sbjct: 61  EEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRL 120

Query: 267 YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 326
           YTDYGRCSRPLFIV+KQRLLIKK+DI+ LQQRESPE+ GWHDLVAKGFIEY+DTEEEETT
Sbjct: 121 YTDYGRCSRPLFIVDKQRLLIKKKDILILQQRESPEESGWHDLVAKGFIEYVDTEEEETT 180

Query: 327 MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
           MISMTINDLV +R++P+EAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 181 MISMTINDLVTSRVNPDEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 240

Query: 387 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
           KQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA VAIACYSGYN
Sbjct: 241 KQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINATVAIACYSGYN 300

Query: 447 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
           QEDS+IMNQSSIDRGFFRSLFFRSYRDEEKKMGTL+KEDFG P+R NTMGMRHGSYDKLD
Sbjct: 301 QEDSLIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGCPNRDNTMGMRHGSYDKLD 360

Query: 507 DDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 566
           DDGLAPPGTRVSGEDVIIGKTTP+  +E QG +SRYTRRDHS +LRHSE+GMVDQVLLTT
Sbjct: 361 DDGLAPPGTRVSGEDVIIGKTTPMVPEETQGPSSRYTRRDHSTALRHSESGMVDQVLLTT 420

Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           NADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW++EGITPDIIVNPHA
Sbjct: 421 NADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWSIEGITPDIIVNPHA 480

Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
           IPSRMT+GQLIECIMGKVAAH+GK+GDATPFTDVT+DNISKALHKCGYQMRGFETMYNGH
Sbjct: 481 IPSRMTVGQLIECIMGKVAAHVGKKGDATPFTDVTLDNISKALHKCGYQMRGFETMYNGH 540

Query: 687 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
           TGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 541 TGRQLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 591


>gi|402219896|gb|EJT99968.1| DNA-dependent RNA polymerase II second largest subunit [Dacryopinax
            sp. DJM-731 SS1]
          Length = 1258

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/849 (65%), Positives = 671/849 (79%), Gaps = 25/849 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+ T +  E+KKAY+FGY++HRL+L AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 395  MLPHISTQEGAESKKAYFFGYMVHRLVLAALDRRELDDRDHFGKKRLDLAGPLLATLFRM 454

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR+LT+DV  Y+QKCV+  ++ N+  A+K  TIT+GLKYSLATGNWG Q      +AGV
Sbjct: 455  LFRRLTKDVYRYMQKCVETHREFNINAAVKPATITNGLKYSLATGNWGDQKKFMQAKAGV 514

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+A+PRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 515  SQVLNRYTFASTLSHLRRTNTPIGRDGKIARPRQLHNTHWGMVCPAETPEGQACGLVKNL 574

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P++EFLEEWG E   + +   I  ATK+FVNG W+GIHR+P+ LV+T
Sbjct: 575  ALMACISVGSLSQPVVEFLEEWGLEPLGDQTNETI-TATKVFVNGVWMGIHRNPQHLVET 633

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQ 297
            +R LRR   +++E+ VVRDIR +ELR+YTD GR  RPLFIV +  Q L+I K++I  LQ 
Sbjct: 634  VRTLRRSDGISSEISVVRDIRERELRLYTDAGRVCRPLFIVNEGTQDLVIGKKEINCLQN 693

Query: 298  RESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---------HPEEA- 345
            R   E    GW  LV+ G +E +D EEEET MI+MT  DL  ++           P+ A 
Sbjct: 694  RVDDEGQPYGWSQLVSSGMVELLDAEEEETVMIAMTPEDLEASKTKRGTGYISNEPQNAA 753

Query: 346  -------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                   + + +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+Q
Sbjct: 754  VRIKSIVHHEHWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQ 813

Query: 399  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 814  VRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 873

Query: 459  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
            DRG FRS+++RSY D EK  G +  E+F +P R  T+ M+HG+Y+KL+ DGL  PG  ++
Sbjct: 874  DRGLFRSIYYRSYTDMEKSTGVVPIEEFEKPHRDTTVRMKHGTYEKLEADGLVAPGIGIN 933

Query: 519  GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
            GED+IIGKT P+  D E  GQ +R +TRRD S  L+ +E G+VDQVLL+TN +G++FVKV
Sbjct: 934  GEDIIIGKTAPLPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLLSTNENGVKFVKV 993

Query: 577  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
            R+RS RIPQIGDKF+SRHGQKGT+GMTY QEDMP+   GITPDI++NPHAIPSRMTIG L
Sbjct: 994  RIRSTRIPQIGDKFASRHGQKGTIGMTYRQEDMPFAANGITPDIVINPHAIPSRMTIGHL 1053

Query: 637  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
            +EC++ K+A  +G EGDATPFTD+TV+++S  L   GYQ RG E MY+GHTGR+L A ++
Sbjct: 1054 VECLLSKLATLIGNEGDATPFTDLTVESVSSLLRNKGYQQRGLEVMYHGHTGRKLQAQVY 1113

Query: 697  LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
            LGPTYYQRLKHMVDDKIH+R RGPVQI+TRQP EGRSRDGGLRFGEMERDCMI+HG + F
Sbjct: 1114 LGPTYYQRLKHMVDDKIHARARGPVQIMTRQPVEGRSRDGGLRFGEMERDCMISHGVASF 1173

Query: 757  LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
            LKER+FDQSDA R+HVC+ CGL +IANLKK +FECR CKNKT   Q +IPYA KLL QEL
Sbjct: 1174 LKERMFDQSDAARLHVCDICGLASIANLKKQTFECRACKNKTRSTQFYIPYAAKLLLQEL 1233

Query: 817  MAMAIAPRM 825
             AM IAPRM
Sbjct: 1234 QAMNIAPRM 1242


>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
 gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
          Length = 1207

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/854 (64%), Positives = 658/854 (77%), Gaps = 19/854 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  + CETKKA++ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR 
Sbjct: 360  LLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRA 419

Query: 61   LFRKLTRD--------VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 111
            LFR L ++        +R   QK ++   D  L   +K  TIT GL YSLATGNWG Q  
Sbjct: 420  LFRNLLKEKMITSCIQMRMTAQKYINKNDDFALDVCVKTSTITRGLAYSLATGNWGDQKK 479

Query: 112  AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 171
            A  +RAGVSQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQ
Sbjct: 480  AHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQ 539

Query: 172  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
            A GLVKNLALM YI+VGS   PILEFLEEW  EN EE+SP+ I  ATKIFVNG WVGIHR
Sbjct: 540  AVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHR 599

Query: 232  DPEMLVKTLRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 290
            +P+ L+ TL++LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L ++KR
Sbjct: 600  EPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEDQKLALRKR 659

Query: 291  DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 350
             I  L+  +      W DLV  G +E ID+ EEET+MI+M   DL          Y DT+
Sbjct: 660  HIDQLKDIDEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSG------VYCDTH 713

Query: 351  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
            THCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYY
Sbjct: 714  THCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYY 773

Query: 411  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
            PQKPLVTTR+ME+L F +LPAGINAIVAI  YSGYNQEDSVIMN S+IDRG FRS+F+RS
Sbjct: 774  PQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRS 833

Query: 471  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT-- 528
            YRD E  +    +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   
Sbjct: 834  YRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVAL 893

Query: 529  PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 588
            P   D+      +Y +RD S  LR SETG+VDQV+L+ N DG +FVK+R+RSVR+PQIGD
Sbjct: 894  PDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGD 953

Query: 589  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
            KF+SRHGQKGT+G+ Y QEDMP+T EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ 
Sbjct: 954  KFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANK 1013

Query: 649  GKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            G+ GDATPF D V V  IS  L + GY +RG E MYNGHTG++LT  IF GPTYYQRLKH
Sbjct: 1014 GEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKH 1073

Query: 708  MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDA 767
            MVDDKIHSR RGP+Q++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD 
Sbjct: 1074 MVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDP 1133

Query: 768  YRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            Y V+VC +CGLI +ANL+ NSFEC+ C+NKT +  V IPYACKLLFQELM+M+IAPR++ 
Sbjct: 1134 YHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMV 1193

Query: 828  KEDTKQSKDHKKKG 841
            K    +   H+ + 
Sbjct: 1194 KPQQPKRAKHQTEA 1207


>gi|225680527|gb|EEH18811.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb03]
 gi|226292836|gb|EEH48256.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1258

 Score = 1160 bits (3000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/870 (64%), Positives = 672/870 (77%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRI 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHLVST 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI MT  DL     V
Sbjct: 682  HKLEADKEIPADLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEMSKQV 741

Query: 337  QARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            QA  + PEE + D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGYNLPEEDHTDRNRRVRSNLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 802  QSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKQHTKVDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 982  DQVLISTSNDDLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGITPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            II+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + GYQ RGF
Sbjct: 1042 IIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISGLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR CKNK 
Sbjct: 1162 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKN 1221

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             I QVHIPYA KLLFQELM+M IA RM TK
Sbjct: 1222 KISQVHIPYAAKLLFQELMSMNIAARMFTK 1251


>gi|295661506|ref|XP_002791308.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226280870|gb|EEH36436.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1258

 Score = 1159 bits (2999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/870 (64%), Positives = 672/870 (77%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRI 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHLVST 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI MT  DL     V
Sbjct: 682  HKLEADKEIPADLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEMSKQV 741

Query: 337  QARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            QA  + PEE + D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGYNLPEEDHTDRNRRVRSNLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 802  QSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKQHTKVDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 982  DQVLISTSNDDLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGITPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            II+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + GYQ RGF
Sbjct: 1042 IIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISGLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR CKNK 
Sbjct: 1162 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKN 1221

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             I QVHIPYA KLLFQELM+M IA RM TK
Sbjct: 1222 KISQVHIPYAAKLLFQELMSMNIAARMFTK 1251


>gi|241948201|ref|XP_002416823.1| DNA-dependent RNA polymerase II component, putative [Candida
            dubliniensis CD36]
 gi|223640161|emb|CAX44408.1| DNA-dependent RNA polymerase II component, putative [Candida
            dubliniensis CD36]
          Length = 1234

 Score = 1159 bits (2997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/872 (63%), Positives = 676/872 (77%), Gaps = 44/872 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 355  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+NG D N+  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 415  LFKKLTKDIYNYMQRCVENGGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGV 474

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FL ++G E  E+  P+  P +T++FVNG WVG+HRDP  LV  
Sbjct: 535  SLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDF 594

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L I K  I
Sbjct: 595  MRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPESETKGELKITKEHI 654

Query: 293  IALQQRESPEDGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDLV------- 336
              L + +  ++           W  LVA G +EY+D EEEET MI+MT +D+        
Sbjct: 655  KQLLRSDELDEDDEDYDNTRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKDSVS 714

Query: 337  ---QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
               Q ++  EE   D              TYTHCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 715  ESEQQKIQLEEQELDPGKRIKPTTSGSTHTYTHCEIHPSMILGVAASIIPFPDHNQSPRN 774

Query: 380  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
            TYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 775  TYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAI 834

Query: 440  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            ACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++H
Sbjct: 835  ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKH 894

Query: 500  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
            G+Y+KLD+DGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 895  GTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTESG 954

Query: 558  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            +VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI 
Sbjct: 955  IVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIV 1014

Query: 618  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
            PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + IS  L   GYQ R
Sbjct: 1015 PDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTTEQISTLLRDHGYQSR 1074

Query: 678  GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
            GFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGG
Sbjct: 1075 GFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1134

Query: 738  LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 796
            LRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKN
Sbjct: 1135 LRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKN 1194

Query: 797  KTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            KT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1195 KTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1226


>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans WO-1]
          Length = 1234

 Score = 1158 bits (2996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/872 (63%), Positives = 676/872 (77%), Gaps = 44/872 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 355  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+NG D N+  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 415  LFKKLTKDIYNYMQRCVENGGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGV 474

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FL ++G E  E+  P+  P +T++FVNG WVG+HRDP  LV  
Sbjct: 535  SLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDF 594

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L I K  +
Sbjct: 595  MRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHV 654

Query: 293  IALQQRESPEDGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDLV------- 336
              L + +  ++           W  LVA G +EY+D EEEET MI+MT +D+        
Sbjct: 655  KQLLRSDELDEDDEDYENSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSVS 714

Query: 337  ---QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
               Q ++  EE   D              TYTHCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 715  ESEQQKIQLEEQELDPGKRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPRN 774

Query: 380  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
            TYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 775  TYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAI 834

Query: 440  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            ACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++H
Sbjct: 835  ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKH 894

Query: 500  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
            G+Y+KLD+DGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 895  GTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTESG 954

Query: 558  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            +VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI 
Sbjct: 955  IVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIV 1014

Query: 618  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
            PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + IS  L   GYQ R
Sbjct: 1015 PDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTTEQISTLLRDHGYQSR 1074

Query: 678  GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
            GFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGG
Sbjct: 1075 GFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1134

Query: 738  LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 796
            LRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKN
Sbjct: 1135 LRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKN 1194

Query: 797  KTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            KT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1195 KTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1226


>gi|320582153|gb|EFW96371.1| DNA-directed RNA polymerase II [Ogataea parapolymorpha DL-1]
          Length = 1275

 Score = 1157 bits (2992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/874 (63%), Positives = 675/874 (77%), Gaps = 45/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+      ET KAY+ GYI++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 396  FLPHISQDSGYETNKAYFLGYIVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 455

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKL+RD+  Y+Q+C++ G D N+  A+K+ TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 456  LFRKLSRDIYRYMQRCIERGDDFNIVSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGV 515

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 516  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 575

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM   +VGSA+ PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV+T
Sbjct: 576  SLMACASVGSASEPITYLLEEWGLEPLSDYEPQEHKNATRVFLNGNWVGTHRDPAMLVET 635

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
            +R+LRR   ++ EV ++RDIR +E +I+TD GR  RPLFIV+       K  L + K   
Sbjct: 636  MRQLRRSGTISPEVSLIRDIREREFKIFTDAGRIYRPLFIVDNDPDSEHKGELKLTKEHC 695

Query: 290  -----RDIIALQQRESPEDGG-----------WHDLVAKGFIEYIDTEEEETTMISMTIN 333
                 R++  + Q E  +D G           W  L++ G IEY+D EEEET +I+M+  
Sbjct: 696  RKILDREVEEIVQDEEFDDEGQPLGPVQRVFGWDSLLSNGIIEYLDAEEEETVLIAMSPE 755

Query: 334  DLVQAR----------LHPEE-----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
            DL+ +           L P +       A ++THCEIHPS+ILGV ASIIPFPDHNQSPR
Sbjct: 756  DLISSASAEVQKAERDLDPAKRIKNVVKAHSFTHCEIHPSMILGVAASIIPFPDHNQSPR 815

Query: 379  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
            NTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL  T++ME+L FR+LPAG NAIVA
Sbjct: 816  NTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLAKTQSMEYLKFRELPAGQNAIVA 875

Query: 439  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
            IACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RS+T+G +
Sbjct: 876  IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRSGISVVEEFEKPMRSSTLGFK 935

Query: 499  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSET 556
             G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+
Sbjct: 936  QGTYEKLDDDGLIAPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTES 995

Query: 557  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
            G+VDQVLLTTNA+GL+F KVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI
Sbjct: 996  GIVDQVLLTTNAEGLKFAKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGI 1055

Query: 617  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
             PD+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ 
Sbjct: 1056 VPDLIINPHAIPSRMTVAHLIECLLSKVASMRGYEGDATPFTDLTVDAVSKLLRENGYQS 1115

Query: 677  RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 736
            RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGP Q LTRQP EGR+RDG
Sbjct: 1116 RGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPYQNLTRQPMEGRARDG 1175

Query: 737  GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCK 795
            GLRFGEMERDCMIAHGA+ FLKERL D SDA+RVH+C  CGL++ IANLKKN FEC+ CK
Sbjct: 1176 GLRFGEMERDCMIAHGAAGFLKERLMDSSDAFRVHICGICGLMSVIANLKKNQFECKSCK 1235

Query: 796  NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            NKT+I Q+HIPYA KLLFQELM+M IAPR+ T++
Sbjct: 1236 NKTNIYQIHIPYAAKLLFQELMSMNIAPRLYTQK 1269


>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1258

 Score = 1155 bits (2987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/871 (62%), Positives = 673/871 (77%), Gaps = 46/871 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++H++L CAL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 384  LLPHISQAEGHETRKAFFLGYMVHKMLQCALERRETDDRDHFGRKRLDLAGPLLANLFRM 443

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KL +DV  Y+QKCV++G+D N+  AIK+ TIT+GLKYSLATGNWG Q   A  +AGV
Sbjct: 444  LFKKLVKDVFKYLQKCVESGRDFNVTLAIKSNTITNGLKYSLATGNWGDQKKPASAKAGV 503

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 504  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 563

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM YITVGS   PI  F+E+   E  E   P   P  TK+F+NG WVG+HRD   L +T
Sbjct: 564  SLMSYITVGSPTEPIQAFMEQRNLEPLETFEPGRSPNVTKVFINGSWVGVHRDAASLYRT 623

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +  LRR   ++ EV V+RDIR +E +I++D GR +RPL++++       K  L+++K  I
Sbjct: 624  VLSLRRTNVISHEVSVIRDIRDREFKIFSDAGRVTRPLYVIDNDPGSLRKGELVLQKYHI 683

Query: 293  IALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-------- 335
              L+  +           E  GW+ L+  G +EY+D EEEET MISM+  DL        
Sbjct: 684  EKLENAKFQTAEDLAPGEEKYGWNGLLNDGCVEYVDAEEEETIMISMSPEDLEISRQVQA 743

Query: 336  ---------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                           V+A+++P   YA T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 744  GYEIPVDDSGDMAKRVKAKVNP---YAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 800

Query: 381  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIV I 
Sbjct: 801  YQSAMGKQAMGIFLTNFNERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVGIM 860

Query: 441  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
            CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK++G    E+F +P R+NT+ ++HG
Sbjct: 861  CYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDSEKRIGMTTIEEFEKPMRNNTLRLKHG 920

Query: 501  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
            +YDKLDDDGL  PG RVSGED+IIGKT PI  D E  GQ ++ +T+RD S  LR +E G+
Sbjct: 921  TYDKLDDDGLVAPGVRVSGEDIIIGKTAPIPADTEELGQRTKNHTKRDVSTPLRSTENGI 980

Query: 559  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
            VDQV+LTTNA+G+RFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI P
Sbjct: 981  VDQVMLTTNAEGMRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAEGIVP 1040

Query: 619  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
            D+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV+N+S+ L + GYQ RG
Sbjct: 1041 DLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVENVSRLLREHGYQSRG 1100

Query: 679  FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
            FE MYNGHTG++L   +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGL
Sbjct: 1101 FEVMYNGHTGKKLVCQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGL 1160

Query: 739  RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNK 797
            RFGEMERDCMI+HGAS FLKERLF+ SDA+RVHVC+ CGL+  IANLKKN FECR C+NK
Sbjct: 1161 RFGEMERDCMISHGASAFLKERLFEVSDAFRVHVCDICGLMTPIANLKKNLFECRPCRNK 1220

Query: 798  TDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            T I Q+H+PYA KLLFQEL AM IA RM +K
Sbjct: 1221 TKISQIHLPYAAKLLFQELTAMNIAARMYSK 1251


>gi|255730467|ref|XP_002550158.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
            tropicalis MYA-3404]
 gi|240132115|gb|EER31673.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
            tropicalis MYA-3404]
          Length = 1240

 Score = 1154 bits (2986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/876 (62%), Positives = 678/876 (77%), Gaps = 48/876 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL GLFR+
Sbjct: 357  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRI 416

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N  D NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 417  LFKKLTKDIYNYMQRCVENDSDFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGV 476

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 477  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 536

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VGS++ PIL FL ++G E  E+  P+  P +T+IFVNG WVG+HRDP  LV  
Sbjct: 537  SLMTCISVGSSSEPILGFLRDFGLEVLEDYVPSNAPDSTRIFVNGVWVGVHRDPAQLVDY 596

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L+I K  I
Sbjct: 597  VRDLRRSGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNEDSPTKGDLMITKEHI 656

Query: 293  IAL-------------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA- 338
              L             ++        W  LV++G +EY+D EEEET MI+M+ +D+  + 
Sbjct: 657  RKLVAEDMDDDELEEDEEGGESRKYTWSSLVSEGIVEYVDAEEEETIMIAMSPDDVKASK 716

Query: 339  ----------------------RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
                                  R+ P   +   TYTHCEIHPS+ILGV ASIIPFPDHNQ
Sbjct: 717  STMSESEQQELQLQEQELDPAKRIKPTTSSNTHTYTHCEIHPSMILGVAASIIPFPDHNQ 776

Query: 376  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
            SPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 777  SPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 836

Query: 436  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
            +VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G  + E F +P RS+T+
Sbjct: 837  VVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKLLETFEKPSRSDTL 896

Query: 496  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS-RYTRRDHSISLRH 553
             ++HG+Y+KLD+DGL  PG RVSGED+IIGKTTPI  D E  GQ +  +++RD S  LR 
Sbjct: 897  RLKHGTYEKLDEDGLIAPGIRVSGEDIIIGKTTPIPADTEELGQRTLHHSKRDASTPLRS 956

Query: 554  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
            +E+G+VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ 
Sbjct: 957  TESGIVDQVLLTTNGDGSKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSA 1016

Query: 614  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
            EGI PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + I+K L + G
Sbjct: 1017 EGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTAEAIAKLLREHG 1076

Query: 674  YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 733
            YQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRS
Sbjct: 1077 YQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRS 1136

Query: 734  RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECR 792
            RDGGLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR
Sbjct: 1137 RDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECR 1196

Query: 793  GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             CKNKT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1197 SCKNKTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1232


>gi|407925273|gb|EKG18288.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
            phaseolina MS6]
          Length = 1258

 Score = 1154 bits (2986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/879 (63%), Positives = 673/879 (76%), Gaps = 51/879 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ETKKA++ GY+I+RLL C LGRR EDDRDH+G KRLDLAGPLL  LFR 
Sbjct: 372  FLPHISQTEGSETKKAFFLGYMIYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRS 431

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLTRDV  Y++KCV+ G+  +LQ A+K  TI++GLKYSLATGNWG Q  AA ++AGV
Sbjct: 432  LFLKLTRDVYNYLKKCVEAGRPFSLQSAVKQGTISNGLKYSLATGNWGDQKKAASSKAGV 491

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 492  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 551

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM ++TVGS   PI +F+ +   E  EE  P+V P ATKIFVNG WVG+HRDP  LV  
Sbjct: 552  SLMCHVTVGSDVTPIQDFMTQRNMELLEEYEPSVSPHATKIFVNGVWVGVHRDPTQLVSV 611

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +++LRR   ++ E+ ++RD+R +E +I+TD GR  RPLFI++       K  L++ +  I
Sbjct: 612  VKKLRRDGTLSPEMSLIRDVRDREFKIFTDAGRVCRPLFIIDDNPTSANKGNLVLSREHI 671

Query: 293  IALQQRESPEDGG------------WHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
              L++ +  +  G            W  L+  G +EY+D EEEE+ MI MT +DL     
Sbjct: 672  DKLEEDQQIDVSGLSDDERDERRYGWKGLLTSGVVEYMDAEEEESAMIVMTPDDLRAHHR 731

Query: 336  ----------VQARLH---------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                       + RL+         P       YTHCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 732  ARQGIVDEEDEETRLNRDPHERVVPPPNPSVKQYTHCEIHPSMILGICASIIPFPDHNQS 791

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TNY+ RMDT+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 792  PRNTYQSAMGKQAMGVCLTNYELRMDTMVNVLYYPQKPLATTRSMEYLRFRELPAGQNAI 851

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EKK+G  V E F +P RS+TM 
Sbjct: 852  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKVGMAVVEQFEKPMRSDTMR 911

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
            ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR +
Sbjct: 912  LKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKMHIKRDVSTPLRST 971

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVLLTTN+DGL+FVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T E
Sbjct: 972  ENGIVDQVLLTTNSDGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTRE 1031

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+I+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVTV  +S  L + GY
Sbjct: 1032 GLTPDLIINPHAIPSRMTIAHLIECLLSKVGALRGQEGDATPFTDVTVTQVSSLLREHGY 1091

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG++LTA +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+R
Sbjct: 1092 QSRGFEIMYNGHTGKKLTAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRAR 1151

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAI-----ANLKKNSF 789
            DGGLRFGEMERDCMI+HGAS FLKERLF+ SDAYRVH+CE CGL+       +NLK+N F
Sbjct: 1152 DGGLRFGEMERDCMISHGASAFLKERLFEVSDAYRVHICEICGLMTPIACPRSNLKRNQF 1211

Query: 790  ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            ECR CKNKT I Q++IPYA KLLFQEL +M IA RM TK
Sbjct: 1212 ECRPCKNKTKIAQIYIPYAAKLLFQELASMNIASRMYTK 1250


>gi|67810752|gb|AAY82003.1| RNA polymerase II second largest subunit [Psilotum nudum]
          Length = 614

 Score = 1154 bits (2985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/613 (88%), Positives = 574/613 (93%), Gaps = 1/613 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQAT
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHRDPE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVE QRLLIKK  I ALQQ+ES     W+DLVAKGFIEY+DTEEEETTMISM  +D   A
Sbjct: 121 IVENQRLLIKKSHIRALQQKESTX-SAWYDLVAKGFIEYVDTEEEETTMISMNXSDXEAA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R HPEEAY+DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180 RDHPEEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVL+YPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTLAYVLFYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRS+F+RSYRDEE K GTLVKE+F RP+R     MRHGSYDKLDDDGL PPGTRVS
Sbjct: 300 DRGFFRSIFYRSYRDEEXKQGTLVKEEFERPNRETXTNMRHGSYDKLDDDGLTPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKTTP+SQD+   QA RY++RD S  LR SE+GM+DQVLLTTNADGLRFVK+RV
Sbjct: 360 GEDVIIGKTTPLSQDDTGNQAQRYSKRDQSTCLRXSESGMIDQVLLTTNADGLRFVKIRV 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RS+R+PQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGI+PDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSIRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAHMG+EGDATPFTDVTVD+ISKALHKCGYQMRGFETMYNGHT RRL AMIF+G
Sbjct: 480 CIMGKVAAHMGREGDATPFTDVTVDSISKALHKCGYQMRGFETMYNGHTXRRLNAMIFIG 539

Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 758
           PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLK
Sbjct: 540 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLK 599

Query: 759 ERLFDQSDAYRVH 771
           ERLFDQSDAYRVH
Sbjct: 600 ERLFDQSDAYRVH 612


>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1131

 Score = 1153 bits (2983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/863 (65%), Positives = 679/863 (78%), Gaps = 38/863 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   +  + KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 255  MLPHISMSEGQQGKKAYFFGYMIHRLLLAALDRRDLDDRDHFGKKRLDLAGPLLAGLFRM 314

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  ++QKCV+  K  NL  A+K+ TIT+GLKYSLATGNWG Q  A   RAGV
Sbjct: 315  LFRKLTKDVYRHLQKCVEMQKPFNLNAAVKSNTITNGLKYSLATGNWGDQKKAMQARAGV 374

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHNS WGM+CPAETPEGQACGLVKNL
Sbjct: 375  SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNL 434

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS + PI+EFLEEWG E+ +E S + +   TK+FVNG W G+HR P  L+ T
Sbjct: 435  ALMSYISVGSPSAPIVEFLEEWGMESLDEFS-SDMSNGTKVFVNGVWQGVHRAPAELLDT 493

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
            ++RLRR  D+  EV V+RD+R +ELR++TD GR  RPLFIVE Q+LL+KK  I  L    
Sbjct: 494  IKRLRRCGDIEPEVSVMRDVRERELRVFTDGGRVCRPLFIVENQQLLLKKEHIEWLSNGC 553

Query: 298  ----------RESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
                       E+ +DG   GW  LVA+G +EY+D EEEET MI MT  +L Q+R + E 
Sbjct: 554  ETAEEDQDAGEEAADDGVPFGWSQLVARGIVEYLDAEEEETVMICMTPEELEQSREYQET 613

Query: 345  A-------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
                                Y+ T+THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAM
Sbjct: 614  GQVPKENYDPAARLKGNTSMYSHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAM 673

Query: 386  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
            GKQAMG+Y+TN++ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGY
Sbjct: 674  GKQAMGVYLTNFRTRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGY 733

Query: 446  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
            NQEDSVIMNQSSIDRG FRS ++RSY D+EK+ G L  E+F +P R +T+ ++HG+YDKL
Sbjct: 734  NQEDSVIMNQSSIDRGLFRSFYYRSYMDQEKRAGALQMEEFEKPTRDSTLRLKHGTYDKL 793

Query: 506  DDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVL 563
            DDDG+  PGTRVSG+D+IIGKT PI +D E  GQ  + +T+RD S+ L+ +E G++DQVL
Sbjct: 794  DDDGIITPGTRVSGDDIIIGKTAPIPKDSEELGQRMKTHTKRDVSMPLKSTENGIIDQVL 853

Query: 564  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
            +TTN DGL+FVKVR+RS RIP+ GDKF+SRHGQKGTVG+ Y QEDMP+T EG+ PDII+N
Sbjct: 854  VTTNQDGLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILYRQEDMPFTSEGVCPDIIIN 913

Query: 624  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
            PHAIPSRMTIG L+EC++ KV+   G EGDATPF++VTV+ IS  L   GYQ RG E M+
Sbjct: 914  PHAIPSRMTIGHLVECLLSKVSTITGNEGDATPFSEVTVEAISALLKDKGYQSRGLEIMF 973

Query: 684  NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 743
            NGHTG++L A  +LGPTYYQRLKHMV+DKIHSR RGPVQILTRQP EGRSRDGGLRFGEM
Sbjct: 974  NGHTGKKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEM 1033

Query: 744  ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 803
            ERDCMI+HG + FLKER+FD SDAYRVHVC+ CG++AIANLKK SFECR C+NKT I QV
Sbjct: 1034 ERDCMISHGIAGFLKERMFDVSDAYRVHVCDFCGMVAIANLKKQSFECRSCRNKTAISQV 1093

Query: 804  HIPYACKLLFQELMAMAIAPRML 826
            +IPYA KLLFQEL +M IA R +
Sbjct: 1094 YIPYAAKLLFQELQSMNIASRFV 1116


>gi|440639504|gb|ELR09423.1| DNA-directed RNA polymerase II subunit B [Geomyces destructans
            20631-21]
          Length = 1272

 Score = 1152 bits (2980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/870 (63%), Positives = 672/870 (77%), Gaps = 43/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 395  LLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRN 454

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT D+  Y+Q+CV+N K+ N    IKA T+T+GLKYSLATGNWG Q  AA + AGV
Sbjct: 455  LFRKLTGDLYKYIQRCVENKKEFNPALGIKATTLTNGLKYSLATGNWGDQKKAASSTAGV 514

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 515  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 574

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV+T
Sbjct: 575  ALMCYVTVGTPSEPIIEFMIQRSMEVLEEYEPLRSPNATKVFVNGVWVGVHRDPSHLVET 634

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRR   ++ EV ++RDIR +E +I+TD GR  RPLF+V+ +       +L+     I
Sbjct: 635  VQDLRRSSLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVVDNKTDSENNGKLVFNAEHI 694

Query: 293  ------------IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
                        + L+++E     G+  L+  G +EY+D EEEET MI MT  DL     
Sbjct: 695  RRLEDDLALPNNMDLEEKEERGYYGFQGLINDGVVEYLDAEEEETVMIVMTPQDLEDGRK 754

Query: 336  --------------VQARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                          + AR+  + +A +  YTHCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 755  ARQGYTVATGAEDSINARVQTKPKATSMVYTHCEIHPSMILGICASIIPFPDHNQSPRNT 814

Query: 381  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
            YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL  TR+ME+L FR+LPAG NAIVAI 
Sbjct: 815  YQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLAITRSMEYLKFRELPAGQNAIVAIL 874

Query: 441  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
            CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+T+ ++HG
Sbjct: 875  CYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYHDQEKRIGMNVVEQFEKPFRSDTLKLKHG 934

Query: 501  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
            +YDKLDDDG+  PG R+SGED+IIGKT P+  D E  GQ ++ +T+RD S  LR +E G+
Sbjct: 935  TYDKLDDDGIVAPGVRISGEDIIIGKTAPLPPDAEELGQRTKSHTKRDASTPLRSTENGI 994

Query: 559  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
            VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ P
Sbjct: 995  VDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVP 1054

Query: 619  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
            D+I+NPHAIPSRMTI  LIEC + KVA+ +GKEGDATPFTDVTVD++S  L   GYQ RG
Sbjct: 1055 DLIINPHAIPSRMTIAHLIECQLSKVASLIGKEGDATPFTDVTVDSVSSRLRDMGYQSRG 1114

Query: 679  FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
            FE MY+GHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGL
Sbjct: 1115 FEVMYHGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGL 1174

Query: 739  RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNK 797
            RFGEMERDCMI+HGAS FLKERLF+ SDA+RVHVC+ CGL+  IA L   SFECR C+NK
Sbjct: 1175 RFGEMERDCMISHGASAFLKERLFEVSDAFRVHVCDICGLMTPIAKLNTQSFECRPCRNK 1234

Query: 798  TDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            T I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1235 TKISQVHIPYATKLLFQELASMNIAARMFT 1264


>gi|260944180|ref|XP_002616388.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
 gi|238850037|gb|EEQ39501.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
          Length = 858

 Score = 1152 bits (2980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/850 (64%), Positives = 663/850 (78%), Gaps = 43/850 (5%)

Query: 22  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 81
           +++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  Y+Q+CV+N K
Sbjct: 1   MVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRLLFKKLTRDIYNYMQRCVENDK 60

Query: 82  DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 140
           + NL  A+K++TIT GL+YSLATGNWG Q  A   RAGVSQVLNR TY+STLSHLRR N+
Sbjct: 61  EFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTLSHLRRTNT 120

Query: 141 PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 200
           PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+A+ PIL FLEE
Sbjct: 121 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTASEPILYFLEE 180

Query: 201 WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 260
           WG E  E+  P+  P  T++FVNG WVG HR+P  LV T+RRLRR+ D++ EV ++RDIR
Sbjct: 181 WGMEPLEDYVPSNSPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDISPEVSIIRDIR 240

Query: 261 LKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG--------G 305
            +E +I+TD GR  RPLFIV+       K  L+++K  I  L   E  E           
Sbjct: 241 EREFKIFTDAGRVYRPLFIVDDDPESETKGDLVLQKEHIHKLINSEYDEYDEESQANAYT 300

Query: 306 WHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPEEAYAD------- 348
           W  LV  G +EY+D EEEET MI+MT +DL           Q  L  EE   D       
Sbjct: 301 WSSLVNDGVVEYVDAEEEETIMIAMTPDDLEASKSSLSETQQKSLQLEEQELDPAKRIKP 360

Query: 349 -------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 401
                  T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM
Sbjct: 361 TYTSSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRM 420

Query: 402 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 461
           DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG
Sbjct: 421 DTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRG 480

Query: 462 FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 521
            FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG RVSGED
Sbjct: 481 LFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGED 540

Query: 522 VIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 579
           +IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +FVKVR+R
Sbjct: 541 IIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMR 600

Query: 580 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 639
           + +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRMT+  LIEC
Sbjct: 601 TTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHAIPSRMTVAHLIEC 660

Query: 640 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 699
           ++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG++L A +F GP
Sbjct: 661 LLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGP 720

Query: 700 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 759
           TYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKE
Sbjct: 721 TYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKE 780

Query: 760 RLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 818
           RL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+I Q+HIPYA KLLFQELMA
Sbjct: 781 RLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMA 840

Query: 819 MAIAPRMLTK 828
           M I+PR+ T+
Sbjct: 841 MNISPRLYTE 850


>gi|46277261|gb|AAS86821.1| RNA polymerase II second largest subunit, partial [Akebia
           longeracemosa]
          Length = 575

 Score = 1151 bits (2977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/575 (94%), Positives = 565/575 (98%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAARPILEFLEEWSTENFEEISPAVIPQATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQ+L
Sbjct: 61  WVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQQL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+DI ALQQRE+PE+GGWH+LVAKGFIEY+DTEEEETTMISMTINDLV AR +PEEA
Sbjct: 121 LIKKKDIRALQQRETPEEGGWHELVAKGFIEYVDTEEEETTMISMTINDLVSARFNPEEA 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 181 YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           L FRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG RVSGEDVIIG
Sbjct: 301 LSFRSYRDEEKKMGTLVKEDFGRPNRDNTMGMRHGSYDKLDDDGLAPPGIRVSGEDVIIG 360

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTPI+Q+E+QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQ
Sbjct: 361 KTTPIAQEESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 420

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRL
Sbjct: 481 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRL 540

Query: 706 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 541 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 575


>gi|154279576|ref|XP_001540601.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
 gi|150412544|gb|EDN07931.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
          Length = 1743

 Score = 1150 bits (2976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/870 (63%), Positives = 669/870 (76%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 867  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRI 926

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  AA ++AGV
Sbjct: 927  LFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGV 986

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 987  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 1046

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 1047 ALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHLVST 1106

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L++ K  I
Sbjct: 1107 VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSKEHI 1166

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI MT  DL     +
Sbjct: 1167 HKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLETSKQL 1226

Query: 337  QARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            QA    PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 1227 QAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 1286

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 1287 QSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 1346

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 1347 YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGT 1406

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 1407 YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 1466

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 1467 DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPD 1526

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + GYQ RGF
Sbjct: 1527 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISSLLREHGYQSRGF 1586

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNG+TGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1587 EVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1646

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR CKNK 
Sbjct: 1647 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKN 1706

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             I QVHIPYA KLLFQELM+M IA RM TK
Sbjct: 1707 KISQVHIPYAAKLLFQELMSMNIAARMFTK 1736


>gi|119489058|ref|XP_001262829.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
 gi|119410987|gb|EAW20932.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
          Length = 1255

 Score = 1150 bits (2976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/867 (64%), Positives = 671/867 (77%), Gaps = 40/867 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 381  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 440

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 441  LFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASSKAGV 500

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 501  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 560

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 561  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDPAHLVNT 620

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            +  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 621  MLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKEHI 680

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+Q +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 681  RKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQL 740

Query: 341  H-----PEE------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                  PEE              A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 741  QAGYALPEEDDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 800

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYS
Sbjct: 801  AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYS 860

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+YD
Sbjct: 861  GYNQEDSVIMNQSSIDRGLFRSLFYRTYTDTEKMVGLTVVERFEKPMRSDTIGMRKGTYD 920

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 561
            KLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G+VDQ
Sbjct: 921  KLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQ 980

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            VL++T+ D L+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG++PD+I
Sbjct: 981  VLVSTSNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLI 1040

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD+IS+ L + GYQ RGFE 
Sbjct: 1041 INPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEV 1100

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFG
Sbjct: 1101 MYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFG 1160

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK  I
Sbjct: 1161 EMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRI 1220

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1221 SQVHIPYAAKLLFQELAAMNIAARMFT 1247


>gi|70982424|ref|XP_746740.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|66844364|gb|EAL84702.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|159123019|gb|EDP48139.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus A1163]
          Length = 1255

 Score = 1150 bits (2975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/867 (64%), Positives = 671/867 (77%), Gaps = 40/867 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 381  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 440

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 441  LFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASSKAGV 500

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 501  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 560

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 561  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDPAHLVNT 620

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            +  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 621  MLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKDHI 680

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+Q +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 681  RKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQL 740

Query: 341  H-----PEE------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                  PEE              A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 741  QAGYALPEEDDPNKRVRSVLSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 800

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYS
Sbjct: 801  AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYS 860

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+YD
Sbjct: 861  GYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYD 920

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 561
            KLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G+VDQ
Sbjct: 921  KLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQ 980

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            VL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG++PD+I
Sbjct: 981  VLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLI 1040

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD+IS+ L + GYQ RGFE 
Sbjct: 1041 INPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEV 1100

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFG
Sbjct: 1101 MYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFG 1160

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK  I
Sbjct: 1161 EMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRI 1220

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1221 SQVHIPYAAKLLFQELAAMNIAARMFT 1247


>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Oryzias latipes]
          Length = 1120

 Score = 1150 bits (2974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/831 (66%), Positives = 642/831 (77%), Gaps = 62/831 (7%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGV 119
            +F+ L +++R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG    A   RAGV
Sbjct: 407  MFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            LR+LRR++                                           DII  +   
Sbjct: 587  LRKLRRQM-------------------------------------------DIIVSE--- 600

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
                    DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+
Sbjct: 601  --------DLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSM 648

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR
Sbjct: 649  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTR 708

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G
Sbjct: 709  SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG 768

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 537
               +E F +P R    GMRH  YDKLDDDGL  PG RVSGEDVIIGKT   P + DE   
Sbjct: 769  FDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDS 828

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
               RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQK
Sbjct: 829  TNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQK 888

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT G+ Y QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATPF
Sbjct: 889  GTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPF 948

Query: 658  TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
             D V V  +S  L + GY +RG E +YNG TGR+LT+ IF+GPTYYQRLKHMVDDKIHSR
Sbjct: 949  NDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSR 1008

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
             RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FLKERLF+ SD Y+VHVC  C
Sbjct: 1009 ARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLC 1068

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            GL+AIAN + +++ECRGC+NKT I  + +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1069 GLMAIANTRTHTYECRGCRNKTQISLIRMPYACKLLFQELMSMSIAPRMMT 1119


>gi|190333344|gb|AAS67502.2| DNA-dependent RNA polymerase II second largest subunit, partial
            [Meyerozyma guilliermondii]
          Length = 1219

 Score = 1150 bits (2974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/866 (64%), Positives = 668/866 (77%), Gaps = 47/866 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 354  LLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRI 413

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 414  LFKKLTKDIYNYMQRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 473

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 474  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 533

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 534  SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 593

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I
Sbjct: 594  MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHI 653

Query: 293  IALQQRESPEDG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
              L   E  E+             GW  LV  G +EY+D EEEET MI+MT  DL     
Sbjct: 654  HKLLNAEYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKS 713

Query: 336  -----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
                  Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQS
Sbjct: 714  SLTATQQKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQS 773

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAI
Sbjct: 774  PRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAI 833

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ 
Sbjct: 834  VAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLR 893

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHS 554
            ++HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +
Sbjct: 894  LKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRST 953

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E+G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +
Sbjct: 954  ESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQ 1013

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            GI PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+P TDVT + +SK L + GY
Sbjct: 1014 GIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPLTDVTAEAVSKLLREHGY 1073

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MY+GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSR
Sbjct: 1074 QSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1133

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR 
Sbjct: 1134 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRS 1193

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAM 819
            CKNKT+I QVHIPYA KLLFQE MAM
Sbjct: 1194 CKNKTNIYQVHIPYAAKLLFQESMAM 1219


>gi|115385276|ref|XP_001209185.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114196877|gb|EAU38577.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1256

 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/869 (63%), Positives = 670/869 (77%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 380  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA  +AGV
Sbjct: 440  LFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 560  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNT 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            +  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 620  MSSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKEHI 679

Query: 293  IALQQ-RESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+Q +E P D           GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 680  RKLEQDKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQL 739

Query: 341  H-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 740  QAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 799

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 800  QSAMGKQAMGVFLTNFDQRMETMANLLYYPQKPLATTRSMEFLRFRELPAGQNAIVAIAC 859

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+
Sbjct: 860  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGT 919

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 920  YDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTESGIV 979

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 980  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVAPD 1039

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD+IS+ L + GYQ RGF
Sbjct: 1040 LIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRGF 1099

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1100 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1159

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK 
Sbjct: 1160 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKH 1219

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1220 RISQVHIPYAAKLLFQELASMNIAARMFT 1248


>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
 gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
          Length = 1196

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/849 (65%), Positives = 659/849 (77%), Gaps = 24/849 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT + CETKK ++ GY +H+LL+C LGR  EDDRDH+G KRLDLAGPLLGGLFR+
Sbjct: 355  VLPHVGTEEHCETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRV 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT+DVR ++Q+C+D GK  N+  AIK+  I+ GLKYSLATGNWG      ++AGVS
Sbjct: 415  LFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHISDGLKYSLATGNWGDKGNT-SKAGVS 473

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYAS+LSHLRR N+P+ R GK AKPRQLHNS WGM+CPAETPEGQA GLVKN+A
Sbjct: 474  QVLNRLTYASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMA 533

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVK 238
            LM YIT G++  P++EFLEE+ TEN  +I P+VI  P   KIFVNG WVGIHRDP+ LV 
Sbjct: 534  LMAYITTGTSQVPVMEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKQLVH 593

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            T R LRR +D++ EV +VRDI   E+RIYTD GR  RPLFIV  Q L IKK  I  LQ  
Sbjct: 594  TFRSLRRMIDIDAEVSIVRDIPESEVRIYTDAGRICRPLFIVTDQELAIKKHHISQLQGV 653

Query: 299  ESPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIH 356
             SP+     W DL+ +G +EY+DTEEEETTMI+M   DL    +   E Y+ TYTHCEIH
Sbjct: 654  -SPDQKKLTWTDLLMEGLVEYVDTEEEETTMIAMEPKDL---DMTVGEPYSTTYTHCEIH 709

Query: 357  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
            PS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQ RMDT+A+VL+YPQKPL 
Sbjct: 710  PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLC 769

Query: 417  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
            TTRAME LHFR+LP+G+N +VAI  Y+GYNQEDS+IMNQS+IDRG FRS ++R Y D+EK
Sbjct: 770  TTRAMEFLHFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYNDQEK 829

Query: 477  K-----MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
                  +G L  E F RP   N  GM+ G Y KLDDDGL  PGTRVSG+DV+IGKT P+ 
Sbjct: 830  SSSVGSVGALNSEFFERPAFDNCKGMKTGDYGKLDDDGLVSPGTRVSGDDVLIGKTAPM- 888

Query: 532  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
             D      SRYT+RD S S++ +E G+VD VL++T  +G RF KVR+R+VRIPQ+GDKF+
Sbjct: 889  -DAIANTPSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKVRIRNVRIPQVGDKFA 947

Query: 592  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
            SRHGQKGT+GMTY QEDMP+T EGI PDIIVNPHAIPSRMTI QLIECI+GKVA   G E
Sbjct: 948  SRHGQKGTIGMTYRQEDMPFTCEGIVPDIIVNPHAIPSRMTIAQLIECILGKVAVFQGCE 1007

Query: 652  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
            GDATPFTDV VD+ISK LH  GYQ  G E MY GHTGR L A +F+GPT+YQRLKH+VDD
Sbjct: 1008 GDATPFTDVHVDDISKRLHAMGYQRHGNEAMYQGHTGRPLNARVFIGPTFYQRLKHLVDD 1067

Query: 712  KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 771
            K+HSR RGPV +LTRQP EGR+RDGGLR GEMERDC+I HG ++F+++R F  SD YR+H
Sbjct: 1068 KVHSRARGPVAMLTRQPLEGRARDGGLRMGEMERDCLITHGCANFIRDRFFCNSDQYRIH 1127

Query: 772  VCEHCGLIAIANLKKNSFECR-----GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            +CE CGL A +NLKK ++ECR     G   K  I QV IPYACKLLFQEL +M I+PR+ 
Sbjct: 1128 ICERCGLTAQSNLKKMTYECRTPTCVGLPYK--ICQVEIPYACKLLFQELQSMCISPRIY 1185

Query: 827  TK-EDTKQS 834
            T+  DT+ +
Sbjct: 1186 TEVRDTRDN 1194


>gi|238498864|ref|XP_002380667.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|83774211|dbj|BAE64336.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220693941|gb|EED50286.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|391868073|gb|EIT77296.1| RNA polymerase II, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1254

 Score = 1148 bits (2969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/868 (63%), Positives = 671/868 (77%), Gaps = 41/868 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 379  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 438

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA  +AGV
Sbjct: 439  LFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGV 498

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 499  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 558

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM Y+TVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 559  ALMCYVTVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNT 618

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDI 292
            ++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 619  MQSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGGLVLNKEHI 678

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+Q +       PED      GW  LV  G +EY+D EEEET MISMT  DL +  +L
Sbjct: 679  RKLEQDKELPPDLDPEDRRERYFGWDGLVRSGVVEYVDAEEEETIMISMTPEDLEISKQL 738

Query: 341  H-----PEEAY-------------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                  PEE               A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 739  QAGYALPEEELDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 798

Query: 383  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
            SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 799  SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACY 858

Query: 443  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
            SGYNQEDSV+MNQSSIDRG FRSLF+R+Y D EK +G  V E F +P R +T+GMR G+Y
Sbjct: 859  SGYNQEDSVVMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRQDTIGMRKGTY 918

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
            DKLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S  LR +E+G+VD
Sbjct: 919  DKLDEDGIIAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKAHTKLDVSTPLRSTESGIVD 978

Query: 561  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
            QVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP++ EG+ PD+
Sbjct: 979  QVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFSREGVAPDL 1038

Query: 621  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
            ++NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD++S+ L + GYQ RGFE
Sbjct: 1039 VINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSRLLREHGYQSRGFE 1098

Query: 681  TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
             MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 1099 VMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1158

Query: 741  GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTD 799
            GEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  +A LKK  FECR C NK  
Sbjct: 1159 GEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHR 1218

Query: 800  IVQVHIPYACKLLFQELMAMAIAPRMLT 827
            I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1219 ISQVHIPYAAKLLFQELASMNIAARMFT 1246


>gi|310792957|gb|EFQ28418.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1259

 Score = 1148 bits (2969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/863 (63%), Positives = 671/863 (77%), Gaps = 37/863 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 389  LPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNI 448

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++ +++  ++++CV++ +  +L   +K +T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 449  VRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGDQKKAMSSTAGVS 508

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 509  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 568

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VG+ A PI++++ + G E  EE  P   P ATK+F+NG WVG+H+DP +LV  +
Sbjct: 569  LMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQDPRILVPDV 628

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ--------RLLIKKRDI 292
            +  RRR  ++ EV +VRDIR +E +I++D GR  RP+F+VE+          L+++K  +
Sbjct: 629  QGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSANGIVPQGSLVLQKATV 688

Query: 293  IAL-QQRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE--- 343
              + +Q+E+P D       W  L   G IEY+D EEEET MI MT  DL   RL  +   
Sbjct: 689  NEMREQQENPPDNPADKITWESLAHSGVIEYLDAEEEETAMICMTPEDLEIYRLQKQGQV 748

Query: 344  -EAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
             E  AD                YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 749  VEDNADGPNSRLKTKINPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGK 808

Query: 388  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 447
            QAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQ
Sbjct: 809  QAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQ 868

Query: 448  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 507
            EDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P RS+T+ ++HG+YDKLDD
Sbjct: 869  EDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFRSDTLRLKHGTYDKLDD 928

Query: 508  DGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLT 565
            DG+  PG RVSGED+IIGKT+PIS D A+ GQ  +++ +RD S  LR +E G+VDQV++T
Sbjct: 929  DGIVAPGVRVSGEDIIIGKTSPISPDNAELGQRTTQHVKRDASTPLRSTENGIVDQVIVT 988

Query: 566  TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 625
            TN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPH
Sbjct: 989  TNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPH 1048

Query: 626  AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 685
            AIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L   GYQ RGFE MYNG
Sbjct: 1049 AIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVTVDSVSQLLRDQGYQSRGFEIMYNG 1108

Query: 686  HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 745
            HTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMER
Sbjct: 1109 HTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMER 1168

Query: 746  DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVH 804
            DCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K SFECR CKNKT I Q+H
Sbjct: 1169 DCMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIH 1228

Query: 805  IPYACKLLFQELMAMAIAPRMLT 827
            IPYA KLLFQEL +M IA RM T
Sbjct: 1229 IPYAAKLLFQELQSMNIAARMFT 1251


>gi|40643998|emb|CAD91516.1| RNA polymerase II second largest subunit [Garrya elliptica]
          Length = 576

 Score = 1148 bits (2969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/576 (96%), Positives = 573/576 (99%)

Query: 171 QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 230
           QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH
Sbjct: 1   QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 60

Query: 231 RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 290
           RDP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+
Sbjct: 61  RDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKK 120

Query: 291 DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 350
           DI ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL+ A+L+PE+AY+DTY
Sbjct: 121 DIQALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLLSAKLNPEDAYSDTY 180

Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
           THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY
Sbjct: 181 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 240

Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
           PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS
Sbjct: 241 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 300

Query: 471 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
           YRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI
Sbjct: 301 YRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 360

Query: 531 SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
           +QD++QGQASRYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 361 AQDDSQGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 420

Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
           SSRHGQKGT+GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK
Sbjct: 421 SSRHGQKGTIGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 480

Query: 651 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD
Sbjct: 481 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 540

Query: 711 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
           DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD
Sbjct: 541 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 576


>gi|392867393|gb|EAS29377.2| DNA-directed RNA polymerase II subunit RPB2 [Coccidioides immitis RS]
          Length = 1258

 Score = 1148 bits (2969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/869 (63%), Positives = 669/869 (76%), Gaps = 41/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 383  FLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 442

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+  + + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 443  LFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 502

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 503  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 562

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P +TKIFVNG WVG+HRDP  LV T
Sbjct: 563  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDPSHLVST 622

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 623  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLTKEHI 682

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI M+  DL      
Sbjct: 683  HKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVMSPEDLEVSKQY 742

Query: 337  QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
            QA   PEE  +D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 743  QAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 802

Query: 383  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
            SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 803  SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACY 862

Query: 443  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
            SGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+Y
Sbjct: 863  SGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTY 922

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMVD 560
            DK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+VD
Sbjct: 923  DKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTKLDVSTPLRSTESGIVD 982

Query: 561  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
            QVL++T+ + L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T+ QEDMP+T EGI PD+
Sbjct: 983  QVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTFRQEDMPFTREGIVPDL 1042

Query: 621  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
            I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGFE
Sbjct: 1043 IINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGFE 1102

Query: 681  TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
             MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 1103 VMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1162

Query: 741  GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTD 799
            GEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR CKNK  
Sbjct: 1163 GEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKNK 1222

Query: 800  IVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            I QVHIPYA KLLFQELM+M IA RM TK
Sbjct: 1223 ISQVHIPYAAKLLFQELMSMNIAARMYTK 1251


>gi|340939429|gb|EGS20051.1| RNA polymerase-like protein [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1286

 Score = 1147 bits (2968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/865 (63%), Positives = 668/865 (77%), Gaps = 38/865 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   + CET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 414  MLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDPDDRDHFGKKRLDLAGPLLAKLFRG 473

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            + R++T+D+ +Y+++C+D  K+ +L   IK  T+T+ LKYSLATGNWG Q  A  + AGV
Sbjct: 474  VIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNALKYSLATGNWGEQKKAMSSTAGV 533

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 534  SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 593

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VG+ A PI+EF+     E  EE  P   P ATK+FVNG WVG+H+DP+ LV  
Sbjct: 594  SLMCYVSVGTPAEPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVSL 653

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKK 289
            ++ LRR+  +N EV +VRDIR +E +I++D GR  RPLF VE++          +LL+KK
Sbjct: 654  VQGLRRKNIINFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEDNGENGVEKGQLLLKK 713

Query: 290  RDIIALQQRES-----PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---- 340
              I  L++ +      P+  GW  L+  G +EY+D EEEET MI MT  DL   RL    
Sbjct: 714  EHIARLERDKELGKYHPDYWGWDGLLKSGAVEYLDAEEEETAMICMTPEDLDMYRLTKLG 773

Query: 341  ---HPEEAYADT------------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
               H      +             YTHCEIHPS++LGVCASIIPFPDHNQSPRNTYQSAM
Sbjct: 774  FQVHDNSGVGNNRIRTKMNMTTHAYTHCEIHPSMLLGVCASIIPFPDHNQSPRNTYQSAM 833

Query: 386  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
            GKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGY
Sbjct: 834  GKQAMGFFLTNYSHRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGY 893

Query: 446  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
            NQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P+R+ T+ M+H +YDKL
Sbjct: 894  NQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINIVEMFEKPNRTETLRMKHSTYDKL 953

Query: 506  DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--GQASRYTRRDHSISLRHSETGMVDQVL 563
            D DG+  PGTRVSG+D+IIGKT PI+ + A+   + +++ +RD S +LR +E G+VD V+
Sbjct: 954  DADGIVAPGTRVSGDDIIIGKTCPINPENAELGSRTAQHVKRDVSTALRSTENGIVDSVI 1013

Query: 564  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
            LTTN DG+R+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+N
Sbjct: 1014 LTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTCEGITPDIIIN 1073

Query: 624  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
            PHAIPSRMTI  LIEC++ KV+   G EGDATPFT+VTVD++S  L + GYQ RGFE MY
Sbjct: 1074 PHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTEVTVDSVSALLREHGYQSRGFEIMY 1133

Query: 684  NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 743
            NGHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGP+QI+TRQP EGR+RDGGLRFGEM
Sbjct: 1134 NGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEM 1193

Query: 744  ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQ 802
            ERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I Q
Sbjct: 1194 ERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQ 1253

Query: 803  VHIPYACKLLFQELMAMAIAPRMLT 827
            VHIPYA KLLFQELMAM IA RM T
Sbjct: 1254 VHIPYAAKLLFQELMAMNIAARMFT 1278


>gi|317155939|ref|XP_001825469.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus oryzae
            RIB40]
          Length = 1221

 Score = 1147 bits (2968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/868 (63%), Positives = 671/868 (77%), Gaps = 41/868 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 346  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 405

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA  +AGV
Sbjct: 406  LFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGV 465

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 466  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 525

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM Y+TVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 526  ALMCYVTVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNT 585

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDI 292
            ++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 586  MQSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGGLVLNKEHI 645

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+Q +       PED      GW  LV  G +EY+D EEEET MISMT  DL +  +L
Sbjct: 646  RKLEQDKELPPDLDPEDRRERYFGWDGLVRSGVVEYVDAEEEETIMISMTPEDLEISKQL 705

Query: 341  H-----PEEAY-------------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                  PEE               A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 706  QAGYALPEEELDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 765

Query: 383  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
            SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 766  SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACY 825

Query: 443  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
            SGYNQEDSV+MNQSSIDRG FRSLF+R+Y D EK +G  V E F +P R +T+GMR G+Y
Sbjct: 826  SGYNQEDSVVMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRQDTIGMRKGTY 885

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
            DKLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S  LR +E+G+VD
Sbjct: 886  DKLDEDGIIAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKAHTKLDVSTPLRSTESGIVD 945

Query: 561  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
            QVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP++ EG+ PD+
Sbjct: 946  QVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFSREGVAPDL 1005

Query: 621  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
            ++NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD++S+ L + GYQ RGFE
Sbjct: 1006 VINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSRLLREHGYQSRGFE 1065

Query: 681  TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
             MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 1066 VMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1125

Query: 741  GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTD 799
            GEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  +A LKK  FECR C NK  
Sbjct: 1126 GEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHR 1185

Query: 800  IVQVHIPYACKLLFQELMAMAIAPRMLT 827
            I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1186 ISQVHIPYAAKLLFQELASMNIAARMFT 1213


>gi|239609658|gb|EEQ86645.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357696|gb|EGE86553.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1258

 Score = 1147 bits (2967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/870 (63%), Positives = 671/870 (77%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRI 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHLVNT 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI MT  DL     +
Sbjct: 682  HKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLETSKQL 741

Query: 337  QARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            QA    PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            Q+AMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG N+IVAIAC
Sbjct: 802  QAAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNSIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 982  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + GYQ RGF
Sbjct: 1042 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISSLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNG+TGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK+ FECR CKNK 
Sbjct: 1162 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKSDFECRACKNKN 1221

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             I QVHIPYA KLLFQELM+M IA R+ TK
Sbjct: 1222 KISQVHIPYAAKLLFQELMSMNIAARLFTK 1251


>gi|261196850|ref|XP_002624828.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239596073|gb|EEQ78654.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1258

 Score = 1147 bits (2967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/870 (63%), Positives = 671/870 (77%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRI 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHLVNT 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI MT  DL     +
Sbjct: 682  HKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLETSKQL 741

Query: 337  QARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            QA    PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            Q+AMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG N+IVAIAC
Sbjct: 802  QAAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNSIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 982  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + GYQ RGF
Sbjct: 1042 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISSLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNG+TGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK+ FECR CKNK 
Sbjct: 1162 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKSDFECRACKNKN 1221

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             I QVHIPYA KLLFQELM+M IA R+ TK
Sbjct: 1222 KISQVHIPYAAKLLFQELMSMNIAARLFTK 1251


>gi|303315773|ref|XP_003067891.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
 gi|240107567|gb|EER25746.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1258

 Score = 1147 bits (2967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/869 (63%), Positives = 669/869 (76%), Gaps = 41/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 383  FLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 442

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+  + + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 443  LFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 502

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 503  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 562

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P +TKIFVNG WVG+HRDP  LV T
Sbjct: 563  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDPSHLVST 622

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 623  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLTKEHI 682

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI M+  DL      
Sbjct: 683  RKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVMSPEDLEVSKQY 742

Query: 337  QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
            QA   PEE  +D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 743  QAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 802

Query: 383  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
            SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 803  SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACY 862

Query: 443  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
            SGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+Y
Sbjct: 863  SGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTY 922

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMVD 560
            DK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+VD
Sbjct: 923  DKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTKLDVSTPLRSTESGIVD 982

Query: 561  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
            QVL++T+ + L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T+ QEDMP+T EGI PD+
Sbjct: 983  QVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTFRQEDMPFTREGIVPDL 1042

Query: 621  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
            I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGFE
Sbjct: 1043 IINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGFE 1102

Query: 681  TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
             MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 1103 VMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1162

Query: 741  GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTD 799
            GEMERDCMIAHGAS FLKERLFD SD +R+H+C+ CGL+  IA LKK  FECR CKNK  
Sbjct: 1163 GEMERDCMIAHGASAFLKERLFDVSDPFRIHICDICGLMTPIAKLKKGDFECRACKNKNK 1222

Query: 800  IVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            I QVHIPYA KLLFQELM+M IA RM TK
Sbjct: 1223 ISQVHIPYAAKLLFQELMSMNIAARMYTK 1251


>gi|134079870|emb|CAK41002.1| unnamed protein product [Aspergillus niger]
 gi|350637591|gb|EHA25948.1| hypothetical protein ASPNIDRAFT_54460 [Aspergillus niger ATCC 1015]
          Length = 1256

 Score = 1147 bits (2966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/869 (63%), Positives = 668/869 (76%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 380  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA  +AGV
Sbjct: 440  LFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 560  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNT 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            +  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 620  MLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKEHI 679

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+Q +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 680  RKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQL 739

Query: 341  H-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 740  QAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 799

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 800  QSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIAC 859

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+
Sbjct: 860  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGT 919

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G+V
Sbjct: 920  YDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIV 979

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 980  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPD 1039

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS+ L + GYQ RGF
Sbjct: 1040 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISRLLREHGYQSRGF 1099

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1100 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1159

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  +A LKK  FECR C NK 
Sbjct: 1160 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKH 1219

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1220 RISQVHIPYAAKLLFQELASMNIAARMFT 1248


>gi|317033268|ref|XP_001395161.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus niger CBS
            513.88]
          Length = 1231

 Score = 1146 bits (2965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/869 (63%), Positives = 668/869 (76%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 355  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA  +AGV
Sbjct: 415  LFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGV 474

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 535  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNT 594

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            +  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 595  MLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKEHI 654

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+Q +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 655  RKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQL 714

Query: 341  H-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 715  QAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 774

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 775  QSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIAC 834

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+
Sbjct: 835  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGT 894

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G+V
Sbjct: 895  YDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIV 954

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 955  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPD 1014

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS+ L + GYQ RGF
Sbjct: 1015 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISRLLREHGYQSRGF 1074

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1075 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1134

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  +A LKK  FECR C NK 
Sbjct: 1135 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKH 1194

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1195 RISQVHIPYAAKLLFQELASMNIAARMFT 1223


>gi|323449030|gb|EGB04921.1| hypothetical protein AURANDRAFT_38738 [Aureococcus anophagefferens]
          Length = 1147

 Score = 1146 bits (2964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/826 (65%), Positives = 656/826 (79%), Gaps = 24/826 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT +  +TKKA++ GYI+H+LL+C+L R  EDDRDHYG KRLDLAGPLLGGLFRM
Sbjct: 298  VLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRM 357

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT+DV AY+QKC+D G+D NL  AIK++ IT GL+YSLATGNWG    A +RAGVS
Sbjct: 358  LFRKLTKDVLAYLQKCIDEGRDFNLASAIKSRVITDGLRYSLATGNWGDRKDA-SRAGVS 416

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYASTLSHLRRLN+P+GREGK AKPRQLHN+ WG +CPAETPEGQA GLVKNLA
Sbjct: 417  QVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLA 476

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVK 238
            LM Y++VGS   PILEFLEEW  EN EEISP  I  P  TKIFVNG WVG+HRDP  L  
Sbjct: 477  LMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLES 536

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK---QRLLIKKRDIIAL 295
            TLR LRR++D++ EV VVRDI+ KELRIYTD GR  RPL I+ K   Q L ++K  I  L
Sbjct: 537  TLRSLRRQIDIDPEVSVVRDIKEKELRIYTDAGRVCRPLLIISKFSRQELRLRKSHIQKL 596

Query: 296  QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEI 355
               E     GW  L+ KG +E +DTEEEETTMI+M  +DL        E Y+ TYTHCEI
Sbjct: 597  VNGEL----GWTQLLVKGLVELVDTEEEETTMIAMVPSDL-------NETYSSTYTHCEI 645

Query: 356  HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 415
            HPS+ILG+C SIIPFPDHNQSPRNTYQSAMGKQAMGIY +N+Q RMDTL++VL+YPQKPL
Sbjct: 646  HPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFQQRMDTLSHVLHYPQKPL 705

Query: 416  VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 475
             TTRAMEHLHFR+LP+G+NAIVAI CY+GYNQEDS+IMNQ++IDRG FRS F+R+Y D+E
Sbjct: 706  ATTRAMEHLHFRELPSGVNAIVAIMCYTGYNQEDSLIMNQAAIDRGLFRSTFYRTYVDQE 765

Query: 476  --KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 533
              + +G    E F RP R     MRHGSYDK+D DGL  PG RVSG D++IGKT P +  
Sbjct: 766  SIRGLGEAFHETFERPTRDQCTAMRHGSYDKVDCDGLVAPGLRVSGADILIGKTAPTTPL 825

Query: 534  EAQGQAS--RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
               G  +  ++T++D S ++R +E+G+VDQV+L+TN +G++F KVR R++RIPQIGDKF+
Sbjct: 826  GMDGNLNHCQFTKQDSSTAMRPNESGLVDQVMLSTNQEGMKFTKVRTRTIRIPQIGDKFA 885

Query: 592  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
            SRHGQKGT+GMTY+QEDMPWT +G++PDI+VNPHAIPSRMTIG L+EC+  KV A  GKE
Sbjct: 886  SRHGQKGTIGMTYSQEDMPWTRDGVSPDIVVNPHAIPSRMTIGHLVECLQSKVGALTGKE 945

Query: 652  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
            GDATPFTDV+VD I+  LH+ GY   G E MY+GHTGR + A +FLGPT+YQRLKH+VDD
Sbjct: 946  GDATPFTDVSVDQIAGVLHELGYHRHGNEVMYSGHTGRMIHAKVFLGPTFYQRLKHLVDD 1005

Query: 712  KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 771
            KIH+R RGPV +LTRQP EGR+RDGGLR GEMERDC+++HG S FL++R+F  SD Y VH
Sbjct: 1006 KIHARSRGPVTMLTRQPMEGRARDGGLRMGEMERDCLVSHGVSSFLRDRMFANSDPYAVH 1065

Query: 772  VCEHCGLIAIANLKKNSFEC--RGCKN-KTDIVQVHIPYACKLLFQ 814
            VC  CG+IA A+L+K+ + C  + C++ K  IV+VHIPYACKLLFQ
Sbjct: 1066 VCTSCGMIAHADLRKHLYWCNNKDCQHAKARIVRVHIPYACKLLFQ 1111


>gi|46277271|gb|AAS86826.1| RNA polymerase II second largest subunit, partial [Antirrhinum
           majus]
          Length = 575

 Score = 1145 bits (2963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/575 (95%), Positives = 567/575 (98%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGL 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR+P+MLV TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61  WVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+D+ ALQQRESP+DGGWH+LVAKGFIEYIDTEEEETTMISMTINDL+ A+++P EA
Sbjct: 121 LIKKKDVQALQQRESPDDGGWHELVAKGFIEYIDTEEEETTMISMTINDLLSAKVNPTEA 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181 YSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR SGEDVIIG
Sbjct: 301 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIG 360

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTPIS D+AQGQA+RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361 KTTPISPDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL++MIFLGPTYYQRL
Sbjct: 481 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRL 540

Query: 706 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 541 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 575


>gi|336466639|gb|EGO54804.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
            2508]
 gi|350286464|gb|EGZ67711.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
            2509]
          Length = 1287

 Score = 1145 bits (2963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/867 (63%), Positives = 670/867 (77%), Gaps = 40/867 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   + CET+KA++ GY++H+LL C LGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 413  LLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRG 472

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            + R+LT+D+  Y+++CVD  K  +L   IKA T+T+GLKYSLATGNWG Q  A  + AGV
Sbjct: 473  IVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGV 532

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T++STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 533  SQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 592

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM +++VG+ A PI+EF+     E  EE  P   P ATK+FVNG WVG+H+DP+ LV  
Sbjct: 593  SLMCFVSVGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTL 652

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKK 289
            ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF+VE++          +L++ K
Sbjct: 653  VQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTK 712

Query: 290  RDIIALQQRES-----PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP-- 342
              I  L+Q +       E  GW  L+  G IEY+D EEEET MI MT  DL   R H   
Sbjct: 713  EHIRRLEQDKELGKYHEEYFGWQGLLESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFK 772

Query: 343  ----EEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                E+  A+                YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQS
Sbjct: 773  GREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQS 832

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYS
Sbjct: 833  AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYS 892

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +PDRSNT+  +HG+YD
Sbjct: 893  GYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYD 952

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQ 561
            KL++DG+  PG RV+G+D+IIGKT+PI+ D  + GQ  +++ +RD S  LR +E+G+VD 
Sbjct: 953  KLENDGIIAPGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDS 1012

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V  TTN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII
Sbjct: 1013 VAFTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDII 1072

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV A  G EGDATPFTDVTVD++S  L + GYQ RGFE 
Sbjct: 1073 INPHAIPSRMTIAHLIECLLSKVGALKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEI 1132

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MY+GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1133 MYHGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1192

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I
Sbjct: 1193 EMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKI 1252

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             QVH+PYA KLLFQELM+M IA R+ T
Sbjct: 1253 AQVHMPYAAKLLFQELMSMNIASRLFT 1279


>gi|67904266|ref|XP_682389.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
 gi|40742763|gb|EAA61953.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
          Length = 1028

 Score = 1145 bits (2963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/867 (63%), Positives = 669/867 (77%), Gaps = 40/867 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 154  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 213

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV++ +++ L   +KA T+T GL+Y+LATGNWG Q  AA  +AGV
Sbjct: 214  LFTRVTRDLQRYVQRCVESDREIYLNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGV 273

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 274  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 333

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HR P  LV+T
Sbjct: 334  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVET 393

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 394  MQALRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHI 453

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L++ +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 454  RKLEEDKELPPDMDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQL 513

Query: 341  H-----PEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                  PEE              A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 514  QAGYALPEEQDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 573

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYS
Sbjct: 574  AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYS 633

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+YD
Sbjct: 634  GYNQEDSVIMNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYD 693

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 561
            KLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S  LR +E G+VDQ
Sbjct: 694  KLDEDGIVNPGVRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQ 753

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            VL+TT  D LR VKVR+R  ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I
Sbjct: 754  VLVTTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLI 813

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD+IS+ L + GYQ RGFE 
Sbjct: 814  INPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEV 873

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFG
Sbjct: 874  MYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFG 933

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK  I
Sbjct: 934  EMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRI 993

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             QVHIPYA KLLFQEL AM I+ RM T
Sbjct: 994  SQVHIPYAAKLLFQELAAMNISARMFT 1020


>gi|367030607|ref|XP_003664587.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
 gi|347011857|gb|AEO59342.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
          Length = 1276

 Score = 1145 bits (2963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/865 (63%), Positives = 670/865 (77%), Gaps = 38/865 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   + CET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 404  MLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDPDDRDHFGKKRLDLAGPLLAKLFRG 463

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            + R++T+D+ +Y+++C+D  K+ +L   IK  T+T+GLKYSLATGNWG Q  A  + AGV
Sbjct: 464  VIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNGLKYSLATGNWGDQKKAMSSTAGV 523

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 524  SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 583

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VG+ A PI+EF+   G E  EE  P   P ATK+FVNG WVGIH+DP+ LV  
Sbjct: 584  SLMCYVSVGTPADPIVEFMIARGMEVLEEYEPLQYPNATKVFVNGTWVGIHQDPKNLVSL 643

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKK 289
            ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF VE+            L++ K
Sbjct: 644  VQGLRRKNVISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQDPNSESGAEVGALILNK 703

Query: 290  RDIIALQQRES-----PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE- 343
              I  L+  +      P+  GW  L+  G IEY+D EEEET MI MT  DL   R     
Sbjct: 704  EHIARLEADKELGKYHPDYWGWPGLLKSGAIEYLDAEEEETVMICMTPEDLDNFRARKRG 763

Query: 344  EAYADT------------------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
            E   DT                  YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAM
Sbjct: 764  EVIEDTSGIGNNRIKTKPNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAM 823

Query: 386  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
            GKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGY
Sbjct: 824  GKQAMGFFLTNYSKRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGY 883

Query: 446  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
            NQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P+RS+T+ ++H +YDKL
Sbjct: 884  NQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINIVEKFEKPNRSDTLRLKHSTYDKL 943

Query: 506  DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVL 563
            D DG+  PG RVSGED+IIGKT PI+ D A+ GQ ++++ +RD S  LR +E+G+VDQV+
Sbjct: 944  DADGIVAPGVRVSGEDIIIGKTCPINPDNAELGQRSAQHVKRDASTPLRSTESGIVDQVV 1003

Query: 564  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
            +TTN DG+R+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+I+N
Sbjct: 1004 VTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTCEGITPDLIIN 1063

Query: 624  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
            PHAIPSRMTI  LIEC++ KV+   G EGDATPFT+VTVD++S  L + GYQ RGFE +Y
Sbjct: 1064 PHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTEVTVDSVSDLLREHGYQSRGFEVLY 1123

Query: 684  NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 743
            +GHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGP+QI+TRQP EGR+RDGGLRFGEM
Sbjct: 1124 HGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEM 1183

Query: 744  ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQ 802
            ERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I Q
Sbjct: 1184 ERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQ 1243

Query: 803  VHIPYACKLLFQELMAMAIAPRMLT 827
            VH+PYA KLLFQELM+M IA RM T
Sbjct: 1244 VHMPYAAKLLFQELMSMNIAARMFT 1268


>gi|358374560|dbj|GAA91151.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1256

 Score = 1145 bits (2962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/869 (63%), Positives = 668/869 (76%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 380  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA  +AGV
Sbjct: 440  LFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 560  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNT 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            +  LRRR  ++ EV ++RDIR +E +I+TD GR  RPL++V+          L++ K  I
Sbjct: 620  MLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLYVVDNDPKSENCGSLVLNKEHI 679

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+Q +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 680  RKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQL 739

Query: 341  H-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 740  QAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 799

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 800  QSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIAC 859

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+
Sbjct: 860  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGT 919

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G+V
Sbjct: 920  YDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIV 979

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 980  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPD 1039

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS+ L + GYQ RGF
Sbjct: 1040 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISRLLREHGYQSRGF 1099

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1100 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1159

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  +A LKK  FECR C NK 
Sbjct: 1160 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKH 1219

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1220 RISQVHIPYAAKLLFQELASMNIAARMFT 1248


>gi|259485464|tpe|CBF82508.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
            [Source:UniProtKB/TrEMBL;Acc:Q9UV95] [Aspergillus
            nidulans FGSC A4]
          Length = 1252

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/867 (63%), Positives = 669/867 (77%), Gaps = 40/867 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 378  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 437

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV++ +++ L   +KA T+T GL+Y+LATGNWG Q  AA  +AGV
Sbjct: 438  LFTRVTRDLQRYVQRCVESDREIYLNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGV 497

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 498  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 557

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HR P  LV+T
Sbjct: 558  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVET 617

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 618  MQALRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHI 677

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L++ +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 678  RKLEEDKELPPDMDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQL 737

Query: 341  H-----PEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                  PEE              A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 738  QAGYALPEEQDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 797

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYS
Sbjct: 798  AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYS 857

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+YD
Sbjct: 858  GYNQEDSVIMNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYD 917

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 561
            KLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S  LR +E G+VDQ
Sbjct: 918  KLDEDGIVNPGVRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQ 977

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            VL+TT  D LR VKVR+R  ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I
Sbjct: 978  VLVTTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLI 1037

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD+IS+ L + GYQ RGFE 
Sbjct: 1038 INPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEV 1097

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFG
Sbjct: 1098 MYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFG 1157

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK  I
Sbjct: 1158 EMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRI 1217

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             QVHIPYA KLLFQEL AM I+ RM T
Sbjct: 1218 SQVHIPYAAKLLFQELAAMNISARMFT 1244


>gi|380478926|emb|CCF43324.1| DNA-directed RNA polymerase II subunit RPB2 [Colletotrichum
            higginsianum]
          Length = 1258

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/863 (62%), Positives = 666/863 (77%), Gaps = 37/863 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 388  LPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNI 447

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++ +++  ++++CV++ +  +L   +K +T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 448  VRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGDQKKAMSSTAGVS 507

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 508  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 567

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VG+ A PI++++ + G E  EE  P   P ATK+F+NG WVG+H+DP +LV  +
Sbjct: 568  LMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQDPRILVPDV 627

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ---- 296
            +  RRR  ++ EV +VRDIR +E +I++D GR  RP+F+VE+    I  +  + LQ    
Sbjct: 628  QGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQGANGIVPQGSLVLQKATV 687

Query: 297  -----QRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 346
                 Q+E+P D       W  L   G IEY+D EEEET MI MT  DL   RL  +   
Sbjct: 688  NEMRDQQENPPDNPADKITWESLAHSGVIEYLDAEEEETAMICMTPEDLEIYRLQKQGQV 747

Query: 347  AD-------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
             +                    YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 748  VEDNTDGPNSRLKTKINPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGK 807

Query: 388  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 447
            QAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQ
Sbjct: 808  QAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQ 867

Query: 448  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 507
            EDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P RS+T+ ++HG+YDKLDD
Sbjct: 868  EDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFRSDTLRLKHGTYDKLDD 927

Query: 508  DGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLT 565
            DG+  PG RVSGED+IIGKT+PIS D A+ GQ  +++ +RD S  LR +E G+VDQV++T
Sbjct: 928  DGIVAPGVRVSGEDIIIGKTSPISPDNAELGQRTTQHVKRDASTPLRSTENGIVDQVIVT 987

Query: 566  TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 625
            TN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPH
Sbjct: 988  TNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPH 1047

Query: 626  AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 685
            AIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L   GYQ RGFE MYNG
Sbjct: 1048 AIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVTVDSVSQLLRDQGYQSRGFEIMYNG 1107

Query: 686  HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 745
            HTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMER
Sbjct: 1108 HTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMER 1167

Query: 746  DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVH 804
            DCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K SFECR CKNKT I Q+H
Sbjct: 1168 DCMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIH 1227

Query: 805  IPYACKLLFQELMAMAIAPRMLT 827
            IPYA KLLFQEL +M IA RM T
Sbjct: 1228 IPYAAKLLFQELQSMNIAARMFT 1250


>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
          Length = 1187

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/844 (64%), Positives = 659/844 (78%), Gaps = 9/844 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  ++CETKKAY+ GY+++R+L   LGRR EDDRDHYGNKR+DLAGPLL  LFR 
Sbjct: 348  LLPHVGISEYCETKKAYFLGYMVNRILQAGLGRRGEDDRDHYGNKRMDLAGPLLAFLFRS 407

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D R   QK ++ GK +N+  AIK K IT GLKYSLATGNWG Q  A+  R GV
Sbjct: 408  LFKKLTKDARIAAQKEIEKGKPMNVLTAIKTKIITDGLKYSLATGNWGDQQKASQCRPGV 467

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTYAS+LSHLRRLNSP+GR+GKLAKPRQLH++QWGM+CPAETPEG A GLVKNL
Sbjct: 468  SQVLNRLTYASSLSHLRRLNSPVGRDGKLAKPRQLHSTQWGMVCPAETPEGHAVGLVKNL 527

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P  I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528  ALMSYISVGSQPSPILEFLEEWSMENLEEITPNSISDATKIFVNGCWVGIHRDPEQLMGT 587

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE QRLL+KK D +A+ + 
Sbjct: 588  LRKLRRQMDIIVSEVSMVRDIRNREIRIYTDAGRICRPLLIVEDQRLLLKK-DHLAMLKD 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
                +  W +L+  G +EYIDT EEET M +MT +++ +     E AY  +YTHCEIHP+
Sbjct: 647  PEYSNYSWTELIKAGVVEYIDTLEEETIMCAMTPDEVKKTD---EMAYCRSYTHCEIHPA 703

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASI+PFPDHNQSPRNTYQSAMGKQA+G++VTN+Q RMDT+  + +YPQKPL  T
Sbjct: 704  MILGVCASIVPFPDHNQSPRNTYQSAMGKQAVGVFVTNFQIRMDTMGNICFYPQKPLCVT 763

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L F +LPAGIN IVA++CY+GYNQEDS+IMN +S+DRGF RS+++R YRD E K 
Sbjct: 764  RSMEYLRFSELPAGINTIVALSCYTGYNQEDSLIMNMASLDRGFHRSIYYRGYRDTENKK 823

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS--QDEAQ 536
                +E F +PDR+ T GMRH  YDKL+DDGL  PGTR+SG+DV+IGKT  +    D   
Sbjct: 824  ILDPEETFEKPDRATTQGMRHAMYDKLEDDGLIAPGTRISGDDVMIGKTIALQDGDDALD 883

Query: 537  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
              A +YT++D S+  + +E G++D V++T N DG +FVK+R+RSVRIP++GDKF+SRHGQ
Sbjct: 884  PTAKKYTKKDASLFAKPTEKGIIDSVMVTINEDGYKFVKIRLRSVRIPEVGDKFASRHGQ 943

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGT G+    EDM +T +G+ PD+IVNPHAIPSRMTIG L EC+  KV A  G+ GDATP
Sbjct: 944  KGTNGIMLRCEDMLFTPDGMQPDLIVNPHAIPSRMTIGHLFECLTSKVGAIKGEIGDATP 1003

Query: 657  FT-DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            F   VTV  +S  LH+  YQ RG E +Y+G TGR++   +F GPTYYQRLKHMV+DKIHS
Sbjct: 1004 FNPSVTVQKVSDILHEYEYQQRGNEVLYSGFTGRKMNTQVFFGPTYYQRLKHMVNDKIHS 1063

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPVQ+L RQP EGRSRDGGLRFGEMERDC IAHGAS FLKERLF+ SD YRVHVC  
Sbjct: 1064 RARGPVQLLNRQPMEGRSRDGGLRFGEMERDCQIAHGASQFLKERLFEVSDPYRVHVCNL 1123

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSK 835
            CGLI +ANL  NSFECR C NKT+I QV +PYACKLLFQELM+M IAPRM+   D +  K
Sbjct: 1124 CGLICVANLTSNSFECRSCSNKTNISQVRMPYACKLLFQELMSMQIAPRMMCLTDAEMKK 1183

Query: 836  DHKK 839
              K+
Sbjct: 1184 ASKR 1187


>gi|121709250|ref|XP_001272355.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
 gi|119400504|gb|EAW10929.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
          Length = 1257

 Score = 1144 bits (2960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/869 (63%), Positives = 670/869 (77%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 381  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 440

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 441  LFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASSKAGV 500

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 501  SQVLSRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 560

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 561  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDPAHLVNT 620

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            +  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 621  MLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGSLVLNKEHI 680

Query: 293  IALQQ-RESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+Q +E P D           GW  LV  G +EY+D EEEE  MISMT  DL +  +L
Sbjct: 681  RKLEQDKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEEHIMISMTPEDLEISKQL 740

Query: 341  H-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 741  QAGYALPEEELNDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 800

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 801  QSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIAC 860

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRS+F+R+Y D EK +G  V E F +P RS+T+GMR G+
Sbjct: 861  YSGYNQEDSVIMNQSSIDRGLFRSMFYRTYTDTEKMVGLTVVERFEKPMRSDTIGMRKGT 920

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G+V
Sbjct: 921  YDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIV 980

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 981  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPD 1040

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S+ L + GYQ RGF
Sbjct: 1041 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRGF 1100

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1101 EVMYNGHTGRKMVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1160

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK 
Sbjct: 1161 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKH 1220

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1221 RISQVHIPYAAKLLFQELAAMNIAARMFT 1249


>gi|28881404|emb|CAD70445.1| DNA-dependent RNA polymerase II RPB140 (RPB2) [Neurospora crassa]
          Length = 1287

 Score = 1144 bits (2959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/867 (63%), Positives = 671/867 (77%), Gaps = 40/867 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   + CET+KA++ GY++H+LL C LGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 413  LLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRG 472

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            + R+LT+D+  Y+++CVD  K  +L   IKA T+T+GLKYSLATGNWG Q  A  + AGV
Sbjct: 473  IVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGV 532

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T++STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 533  SQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 592

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM +++VG+ A PI+EF+     E  EE  P   P ATK+FVNG WVG+H+DP+ LV  
Sbjct: 593  SLMCFVSVGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTL 652

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKK 289
            ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF+VE++          +L++ K
Sbjct: 653  VQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTK 712

Query: 290  RDIIALQQRES----PED-GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP-- 342
              I  L+Q +      ED  GW  L+  G IEY+D EEEET MI MT  DL   R H   
Sbjct: 713  EHIRRLEQDKELGKYHEDYFGWQGLLESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFK 772

Query: 343  ----EEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                E+  A+                YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQS
Sbjct: 773  GREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQS 832

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYS
Sbjct: 833  AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYS 892

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +PDRSNT+  +HG+YD
Sbjct: 893  GYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYD 952

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQ 561
            KL++DG+  PG RV+G+D+IIGKT+PI+ D  + GQ  +++ +RD S  LR +E+G+VD 
Sbjct: 953  KLENDGIIAPGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDS 1012

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V  TTN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII
Sbjct: 1013 VAFTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDII 1072

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV A  G EGDATPFTDVTVD++S  L + GYQ RGFE 
Sbjct: 1073 INPHAIPSRMTIAHLIECLLSKVGALKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEI 1132

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MY+GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1133 MYHGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1192

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I
Sbjct: 1193 EMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKI 1252

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             QVH+PYA KLLFQELM+M IA R+ T
Sbjct: 1253 AQVHMPYAAKLLFQELMSMNIASRLFT 1279


>gi|326475036|gb|EGD99045.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton tonsurans CBS
            112818]
          Length = 1258

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/870 (63%), Positives = 670/870 (77%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLVGT 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
              L+  +E P D           GW  LV  G IEY+D EEEET MI MT  DL  ++ +
Sbjct: 682  HKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPEDLEASKQY 741

Query: 342  ------PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 802  QSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGITPD
Sbjct: 982  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGITPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGF
Sbjct: 1042 LIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA +KK  FECR C+NK 
Sbjct: 1162 FGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKN 1221

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             I QVHIPYA KLLFQEL +M IA RM TK
Sbjct: 1222 KISQVHIPYAAKLLFQELASMNIAARMYTK 1251


>gi|326484701|gb|EGE08711.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton equinum CBS
            127.97]
          Length = 1258

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/870 (63%), Positives = 670/870 (77%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLVGT 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
              L+  +E P D           GW  LV  G IEY+D EEEET MI MT  DL  ++ +
Sbjct: 682  HKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPEDLEASKQY 741

Query: 342  ------PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 802  QSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGITPD
Sbjct: 982  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGITPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGF
Sbjct: 1042 LIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA +KK  FECR C+NK 
Sbjct: 1162 FGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKN 1221

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             I QVHIPYA KLLFQEL +M IA RM TK
Sbjct: 1222 KISQVHIPYAAKLLFQELASMNIAARMYTK 1251


>gi|452843951|gb|EME45885.1| hypothetical protein DOTSEDRAFT_42537 [Dothistroma septosporum NZE10]
          Length = 1260

 Score = 1143 bits (2956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/871 (62%), Positives = 670/871 (76%), Gaps = 44/871 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ETKKA++ GY+++RLL CALGR  EDDRDH+G KRLDLAGPL+  +FR+
Sbjct: 382  FLPHISQEEGSETKKAFFLGYMVNRLLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRL 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
             F++L +D++ Y+ +C++ G++ N+  AIK+  ITSGL+Y LATGNWG Q  AA  +AGV
Sbjct: 442  KFQQLVKDMKTYLHRCIEGGREFNIALAIKSNIITSGLRYCLATGNWGDQKKAASAKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y+TVG+ A P+++F+ + G +  EE  P + P+ATKIF+NG W+G+H+D   L  T
Sbjct: 562  SLMCYVTVGTPAEPLIDFMRQRGMDLLEEYDPVLNPKATKIFLNGTWIGVHKDAGGLTNT 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---------------- 283
            LR LRR+  V+ EV ++RD+R +E++I+TD GR  RPLF+VE                  
Sbjct: 622  LRGLRRKGVVSFEVTIIRDVREREIKIFTDCGRVCRPLFVVENDPKSTNNGNLVLQREHC 681

Query: 284  RLLIKKRDIIALQQRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
            + L   ++++A  Q  S E+      GW  L+ KG +EY+D EEEET MI MT  DL + 
Sbjct: 682  QRLADDQNVLAELQGVSEEERETKIFGWKGLIDKGVVEYLDAEEEETAMIIMTPEDLEEH 741

Query: 339  RL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
            +L                   +    Y  T+THCEIHP++ILG+CASIIPFPDHNQSPRN
Sbjct: 742  KLMRQGVQMDDTRADPHRRIKNKPNPYVRTWTHCEIHPAMILGICASIIPFPDHNQSPRN 801

Query: 380  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
            TYQSAMGKQAMG+ +TNY  RMDT+A VLYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 802  TYQSAMGKQAMGVTLTNYNTRMDTMANVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 861

Query: 440  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            ACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+EK++G  V E F +P R++TM M+ 
Sbjct: 862  ACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRVGMSVVEAFEKPVRADTMRMKK 921

Query: 500  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETG 557
            G+YDKLD+DG+  PG+RVSGED++IGKT P+  D E  GQ  + +T+RD S  LR +E G
Sbjct: 922  GTYDKLDEDGIITPGSRVSGEDILIGKTAPMPPDAEELGQRTTAHTKRDVSTPLRSTENG 981

Query: 558  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            ++DQVL+TTN +GLRFVKVR R  ++PQIGDKF+SRHGQKGTVG+TY QEDMP+T +G+T
Sbjct: 982  VIDQVLVTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTVGITYRQEDMPFTADGLT 1041

Query: 618  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
            PDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVTV ++S+ L   G+Q R
Sbjct: 1042 PDIIINPHAIPSRMTIAHLIECLLSKVGALNGQEGDATPFTDVTVTSVSEILASHGFQQR 1101

Query: 678  GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
            GFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGG
Sbjct: 1102 GFEVMYNGHTGRKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGG 1161

Query: 738  LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 796
            LRFGEMERDCMIAHGAS FLKERL D SDA+RVHVCE CGL+  IA+LKK  FECR CKN
Sbjct: 1162 LRFGEMERDCMIAHGASSFLKERLLDVSDAFRVHVCEICGLMTPIASLKKQQFECRPCKN 1221

Query: 797  KTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            KT I Q+ IPYA KLLFQEL AM +A RM T
Sbjct: 1222 KTRIAQIIIPYAAKLLFQELAAMNVATRMFT 1252


>gi|361128142|gb|EHL00094.1| putative DNA-directed RNA polymerase II subunit RPB2 [Glarea
            lozoyensis 74030]
          Length = 1263

 Score = 1143 bits (2956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/871 (62%), Positives = 675/871 (77%), Gaps = 43/871 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++H++L CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 386  LLPHISQKEGSETRKAFFLGYMVHKMLQCALGRRECDDRDHFGKKRLDLAGPLLAKLFRN 445

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF++LT DV  Y+Q+CV+N ++ NL   +K+ T+T+GLKYSLATGNWG Q  AA + AGV
Sbjct: 446  LFKRLTGDVYKYLQRCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAAQSTAGV 505

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 506  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 565

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV+T
Sbjct: 566  ALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVRT 625

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            ++ LRR   ++ EV ++RDIR +E +I+TD GR  RPLF+++       K  L++ K  +
Sbjct: 626  VQHLRRSHLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVIDNDVDSQNKGNLVLNKDHV 685

Query: 293  ------------IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
                        + L+Q+      G+  L+  G +EY+D EEEET MI MT  DL  +R 
Sbjct: 686  RRLEEDQLMPANMDLEQKAEAGYFGFQGLINAGVVEYLDAEEEETVMIVMTPEDLDISRQ 745

Query: 340  ------LHPEEA-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                  L P+E+              A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 746  LQAGYALRPDESGDLNKRVKAPMKPTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNT 805

Query: 381  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
            YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIA
Sbjct: 806  YQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIA 865

Query: 441  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
            CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+T+ ++HG
Sbjct: 866  CYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPFRSDTLKLKHG 925

Query: 501  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
            +YDKLDDDG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+RD S  LR +E G+
Sbjct: 926  TYDKLDDDGIVAPGVRVSGEDIIIGKTAPMAPDAEELGQRTKAHTKRDASTPLRSTENGI 985

Query: 559  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
            VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI P
Sbjct: 986  VDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRMEDMPFTSQGIVP 1045

Query: 619  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
            D+I+NPHAIPSRMTI  LIEC + KV+   G EGDATPFT+VTVD++SK L   GYQ RG
Sbjct: 1046 DLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPFTEVTVDSVSKLLRDHGYQSRG 1105

Query: 679  FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
            FE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGL
Sbjct: 1106 FEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGL 1165

Query: 739  RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNK 797
            RFGEMERDCMI+HGA+ FLKERLF+ SDA+RVH+C+ CGL+  IA L+  +FECR CKNK
Sbjct: 1166 RFGEMERDCMISHGAAAFLKERLFEVSDAFRVHLCDICGLMTPIAKLQSQNFECRSCKNK 1225

Query: 798  TDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            T I Q+HIPYA KLLFQEL +M IA RM T+
Sbjct: 1226 TRISQIHIPYAAKLLFQELASMNIAARMFTE 1256


>gi|315041535|ref|XP_003170144.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
 gi|311345178|gb|EFR04381.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
          Length = 1258

 Score = 1142 bits (2955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/870 (63%), Positives = 670/870 (77%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLVGT 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
              L+  +E P D           GW  LV  G IEY+D EEEET MI MT  DL  ++ +
Sbjct: 682  HKLEADKELPADLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPEDLEASKQY 741

Query: 342  ------PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 802  QSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+TPD
Sbjct: 982  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGF
Sbjct: 1042 LIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA +KK  FECR C+NK 
Sbjct: 1162 FGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKN 1221

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             I QVHIPYA KLLFQEL +M IA RM TK
Sbjct: 1222 KISQVHIPYAAKLLFQELASMNIAARMYTK 1251


>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
            bisporus H97]
          Length = 1183

 Score = 1142 bits (2954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/815 (67%), Positives = 649/815 (79%), Gaps = 25/815 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 369  MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 428

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 429  LFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 488

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 489  SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 548

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 549  ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTSP-CTKVFVNGVWMGVHRDPANLVKT 607

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            +++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL+ KR I  L    
Sbjct: 608  IKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGS 667

Query: 300  SPE--DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA----- 345
              E  +  W  L+  G IE +D EEEET MISMT  DL  +RL       H  +      
Sbjct: 668  DDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDPA 727

Query: 346  -------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                   +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM KQAMGIY+TN+ 
Sbjct: 728  ARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTNFL 787

Query: 399  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 788  IRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 847

Query: 459  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
            DRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V 
Sbjct: 848  DRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVR 907

Query: 519  GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
            GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVKV
Sbjct: 908  GEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKV 967

Query: 577  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
            RVR+ RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGI PD+I+NPHAIPSRMTIG L
Sbjct: 968  RVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHL 1027

Query: 637  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
            +EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A I+
Sbjct: 1028 VECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIY 1087

Query: 697  LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
            LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + F
Sbjct: 1088 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGF 1147

Query: 757  LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFEC 791
            LKERLF+ SDAYR+HVC+ CGL AIANLKK +FE 
Sbjct: 1148 LKERLFEASDAYRLHVCDICGLTAIANLKKQTFEA 1182


>gi|429863599|gb|ELA38032.1| DNA-directed RNA polymerase ii subunit rpb2 [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1259

 Score = 1142 bits (2954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/864 (62%), Positives = 666/864 (77%), Gaps = 38/864 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 388  LPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNI 447

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++ +++  ++++CV++ +  +L   +K +T+++GLKYSLATGNWG Q  AA + AGVS
Sbjct: 448  VRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGDQKKAASSTAGVS 507

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 508  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 567

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VG+ A PI++++ + G E  EE  P   P ATK+F+NG WVG+H+DP +LV  +
Sbjct: 568  LMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQDPRILVPDV 627

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ---- 296
            +  RRR  ++ EV +VRDIR +E +I++D GR  RP+F+VE+    I  +  + LQ    
Sbjct: 628  QGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSPTGIVPQGSLVLQKGTV 687

Query: 297  -----QRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP---- 342
                 Q+E+P D       W  L   G IEY+D EEEET MI MT  DL   RL      
Sbjct: 688  NEMRDQQENPPDNPNDKITWETLAHSGVIEYLDAEEEETAMICMTPEDLEIYRLQKQGQV 747

Query: 343  -EEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
             EE  AD                YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAMG
Sbjct: 748  IEEDNADDRNRRLKTKINPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMG 807

Query: 387  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
            KQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYN
Sbjct: 808  KQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYN 867

Query: 447  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
            QEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P RS+T+ ++HG+YDKLD
Sbjct: 868  QEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFRSDTLRLKHGTYDKLD 927

Query: 507  DDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLL 564
            DDG+  PG RVSGED+IIGKT+PI+ D  + GQ  +++ +RD S  LR +E G+VD V++
Sbjct: 928  DDGIVAPGVRVSGEDIIIGKTSPINPDNQELGQKTTQHVKRDASTPLRSTENGIVDSVII 987

Query: 565  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 624
            TTN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NP
Sbjct: 988  TTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINP 1047

Query: 625  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 684
            HAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L   GYQ RGFE MY 
Sbjct: 1048 HAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVTVDSVSQLLRDQGYQSRGFEIMYQ 1107

Query: 685  GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 744
            GHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEME
Sbjct: 1108 GHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEME 1167

Query: 745  RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQV 803
            RDCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K SFECR CKNKT I Q+
Sbjct: 1168 RDCMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQI 1227

Query: 804  HIPYACKLLFQELMAMAIAPRMLT 827
            HIPYA KLLFQEL +M IA RM T
Sbjct: 1228 HIPYAAKLLFQELQSMNIAARMFT 1251


>gi|296818239|ref|XP_002849456.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
 gi|238839909|gb|EEQ29571.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
          Length = 1258

 Score = 1142 bits (2953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/870 (62%), Positives = 670/870 (77%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLVGT 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
              L+  +E P D           GW  LV  G +EY+D EEEET MI MT  DL  ++ +
Sbjct: 682  HKLEADKELPPDLDPEERRERHFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEASKQY 741

Query: 342  ------PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGYGMPEEDTTDSNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 802  QSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+TPD
Sbjct: 982  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGF
Sbjct: 1042 LIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA +KK  FECR C+NK 
Sbjct: 1162 FGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKN 1221

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             I QVHIPYA KLLFQEL +M IA RM TK
Sbjct: 1222 KISQVHIPYAAKLLFQELASMNIAARMYTK 1251


>gi|219116262|ref|XP_002178926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409693|gb|EEC49624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1212

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/848 (65%), Positives = 662/848 (78%), Gaps = 19/848 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT + CETKK ++ GY +H+LL+C LGR  EDDRDH+G KRLDLAGPLLGGLFR+
Sbjct: 373  VLPHVGTEEHCETKKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGLFRV 432

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKLT+DVR ++Q+C+D GK  N+  AIK+  IT GLKYSLATGNWG    A T+AGVS
Sbjct: 433  LFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNWGDKGMA-TKAGVS 491

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYAS+LSHLRR N+P+ R GK AKPRQLHN+ WGM+CPAETPEGQA GLVKNLA
Sbjct: 492  QVLNRLTYASSLSHLRRCNTPLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLA 551

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVK 238
            LM YIT G+A  P+LEFLEE+ TEN  +I P+VI  P   KIFVNG WVGIHRDP+ L +
Sbjct: 552  LMAYITTGTAQVPVLEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKALEE 611

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            T R LRR VD++ EV +VRDI  KE+RIYTD GR  RPLF+V++Q+L IKK  I+ LQ  
Sbjct: 612  TFRSLRRMVDIDAEVSIVRDIADKEVRIYTDAGRICRPLFVVQEQKLAIKKHHIMQLQGM 671

Query: 299  ESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
            +  E    W DL+ +G +EYIDTEEEETTM++M  NDL         +Y+ TYTHCEIHP
Sbjct: 672  DPNEKKLTWTDLLMEGLVEYIDTEEEETTMVAMEPNDLDSDD-----SYSSTYTHCEIHP 726

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            S+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQ RMDT+A+VL+YPQKPL T
Sbjct: 727  SMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCT 786

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            TRAME LHFR+LP+G+N IV I  Y+GYNQEDS+I+NQS+IDRG FRS ++R Y D+EK 
Sbjct: 787  TRAMEFLHFRELPSGVNCIVGILVYTGYNQEDSLILNQSAIDRGLFRSSYYRCYIDQEKA 846

Query: 478  -----MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 532
                 +G+L  E F +P   +T GM+HG Y KLDDDGL  PGTRVSG+DV+IGKT PI  
Sbjct: 847  STVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDDDGLVAPGTRVSGDDVLIGKTAPI-- 904

Query: 533  DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 592
            D   G  SRY++RD S S++ +E G+VD VL++T  +G RF KVR+R+VR PQIGDKF+S
Sbjct: 905  DATAGMPSRYSKRDCSTSMKANEHGIVDNVLISTTKEGYRFTKVRIRNVRTPQIGDKFAS 964

Query: 593  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 652
            RHGQKGT+GMTY QEDMP+TVEGI PDIIVNPHAIPSRMTI QLIEC++GKV    G EG
Sbjct: 965  RHGQKGTIGMTYRQEDMPFTVEGIVPDIIVNPHAIPSRMTIAQLIECLLGKVVVFQGCEG 1024

Query: 653  DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
            DATPFTDVTV++IS  LH  GYQ  G E +Y GHTGR L A +F+GPT+YQRLKH+VDDK
Sbjct: 1025 DATPFTDVTVEDISTRLHAMGYQRHGNEALYQGHTGRPLNARVFIGPTFYQRLKHLVDDK 1084

Query: 713  IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 772
            +HSR RGPV +LTRQP EGRSRDGGLR GEMERDC+I HG ++F+++R F  SD YR+H+
Sbjct: 1085 VHSRARGPVAMLTRQPLEGRSRDGGLRMGEMERDCLITHGCANFMRDRFFVNSDQYRIHI 1144

Query: 773  CEHCGLIAIANLKKNSFECRG--CKNK-TDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            CE CGL A ANLKK ++ECR   C  + T I QV IPYA KLL QEL +M I  R+ TK 
Sbjct: 1145 CERCGLTAQANLKKMTYECRSPMCVGRPTQICQVEIPYAAKLLLQELNSMCIQTRIYTKN 1204

Query: 830  DTKQSKDH 837
             T +   +
Sbjct: 1205 VTTRDNSY 1212


>gi|327298359|ref|XP_003233873.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
 gi|326464051|gb|EGD89504.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
          Length = 1258

 Score = 1140 bits (2948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/870 (62%), Positives = 669/870 (76%), Gaps = 42/870 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLVGT 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
              L+  +E P D           GW  LV  G IEY+D EEEET MI MT  DL  ++ +
Sbjct: 682  HKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPEDLEASKQY 741

Query: 342  ------PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+LPAG N IVAIAC
Sbjct: 802  QSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNVIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+TPD
Sbjct: 982  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGF
Sbjct: 1042 LIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA +KK  FECR C+N+ 
Sbjct: 1162 FGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNRN 1221

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
             I QVHIPYA KLLFQEL +M IA RM TK
Sbjct: 1222 KISQVHIPYAAKLLFQELASMNIAARMYTK 1251


>gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Candida tropicalis]
          Length = 1020

 Score = 1139 bits (2947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/867 (62%), Positives = 669/867 (77%), Gaps = 48/867 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL GLFR+
Sbjct: 154  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRI 213

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+N  D NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 214  LFKKLTKDIYNYMQRCVENDSDFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGV 273

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 274  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 333

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VGS++ PIL FL ++G E  E+  P+  P +T+IFVNG WVG+HRDP  LV  
Sbjct: 334  SLMTCISVGSSSEPILGFLRDFGLEVLEDYVPSNAPDSTRIFVNGVWVGVHRDPAQLVDY 393

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L+I K  I
Sbjct: 394  VRDLRRSGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNEDSPTKGDLMITKEHI 453

Query: 293  IAL-------------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA- 338
              L             ++        W  LV++G + Y+D EEEET MI+M+ +D+  + 
Sbjct: 454  RKLVAEDMDDDELEEDEEGGESRKYTWSSLVSEGIVVYVDAEEEETIMIAMSPDDVKASK 513

Query: 339  ----------------------RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
                                  R+ P   +   TYTHCEIHPS+ILGV ASIIPFPDHNQ
Sbjct: 514  STMSESEQQELQLQEQELDPAKRIKPTTSSNTHTYTHCEIHPSMILGVAASIIPFPDHNQ 573

Query: 376  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
            SPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 574  SPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 633

Query: 436  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
            +VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G  + E F +P RS+T+
Sbjct: 634  VVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKLLETFEKPSRSDTL 693

Query: 496  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS-RYTRRDHSISLRH 553
             ++HG+Y+KLD+DGL  PG RVSGED+IIGKTTPI  D E  GQ +  +++RD S  LR 
Sbjct: 694  RLKHGTYEKLDEDGLIAPGIRVSGEDIIIGKTTPIPADTEELGQRTLHHSKRDASTPLRS 753

Query: 554  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
            +E+G+VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ 
Sbjct: 754  TESGIVDQVLLTTNGDGSKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSA 813

Query: 614  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
            EGI PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + I+K L + G
Sbjct: 814  EGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTAEAIAKLLREHG 873

Query: 674  YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 733
            YQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRS
Sbjct: 874  YQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRS 933

Query: 734  RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECR 792
            RDGGLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR
Sbjct: 934  RDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECR 993

Query: 793  GCKNKTDIVQVHIPYACKLLFQELMAM 819
             CKNKT+I Q+HIPYA KLLFQE M+M
Sbjct: 994  SCKNKTNIYQIHIPYAAKLLFQEFMSM 1020


>gi|46277257|gb|AAS86819.1| RNA polymerase II second largest subunit, partial [Dioscorea
           sansibarensis]
          Length = 572

 Score = 1139 bits (2945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/573 (93%), Positives = 562/573 (98%), Gaps = 1/573 (0%)

Query: 167 TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 226
           TPEGQACGLVKNLALMVYITVGSAA P+LEFLEEW TENFEEISPAVIPQATKIFVNGCW
Sbjct: 1   TPEGQACGLVKNLALMVYITVGSAANPLLEFLEEWSTENFEEISPAVIPQATKIFVNGCW 60

Query: 227 VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 286
           VGIHR+P++LVKTLR+LRR++D+NTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLL
Sbjct: 61  VGIHRNPDLLVKTLRKLRRQIDINTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLL 120

Query: 287 IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 346
           IKK+DI ALQ+RE+ E+G WHDLVAKGFIEYIDTEEEETTMISMTINDL+ AR +PEEAY
Sbjct: 121 IKKKDIRALQERETSEEG-WHDLVAKGFIEYIDTEEEETTMISMTINDLINARQNPEEAY 179

Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
           +DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY
Sbjct: 180 SDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 239

Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
           VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL
Sbjct: 240 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 299

Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
           FFRSYRDEEKKMGTLVKEDFG+P+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK
Sbjct: 300 FFRSYRDEEKKMGTLVKEDFGKPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 359

Query: 527 TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
           T+PI QDE+QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQI
Sbjct: 360 TSPIPQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQI 419

Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
           GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA
Sbjct: 420 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 479

Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLK
Sbjct: 480 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLK 539

Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
           HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR
Sbjct: 540 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 572


>gi|171677674|ref|XP_001903788.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936905|emb|CAP61564.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1278

 Score = 1139 bits (2945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/865 (63%), Positives = 664/865 (76%), Gaps = 38/865 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   + CET+KA++ GY++++LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 406  MLPHISQTEGCETRKAFFLGYMVNKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRG 465

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            + R++T+D+  Y+++C+D  K   L   IKA T+T+ LKYSLATGNWG Q  A  + AGV
Sbjct: 466  VVRRMTQDLMGYMKRCLDTNKHFTLALGIKANTLTNALKYSLATGNWGDQKKAMSSTAGV 525

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 526  SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 585

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VG+ A PI++F+   G +  EE  P   P ATK+FVNG WVG+H DP+ LV  
Sbjct: 586  SLMCYVSVGTPADPIVDFMTARGMDVLEEYEPLRAPNATKVFVNGTWVGVHNDPKQLVTL 645

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR---------LLIKKR 290
            ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF VE++           LI  +
Sbjct: 646  VQDLRRKNVISFEVSLVRDIREREFKIFSDAGRVMRPLFTVEQEEKGNHGVEKGQLILNK 705

Query: 291  DIIALQQRES------PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
            D IA  QR+       P+  GW  L+  G IEY+D EEEETTMI MT  DL   R+    
Sbjct: 706  DHIARLQRDKELGKYHPDYWGWQGLLKSGAIEYLDAEEEETTMICMTPQDLDDFRMTKLG 765

Query: 345  AYADT-------------------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
             + +T                   YTHCEIHP+++LG+CASIIPFPDHNQSPRNTYQSAM
Sbjct: 766  FHIETTSGQGNNRIRTKVNKTTHMYTHCEIHPAMLLGICASIIPFPDHNQSPRNTYQSAM 825

Query: 386  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
            GKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGY
Sbjct: 826  GKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGY 885

Query: 446  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
            NQEDSV+MNQSSIDRG FRSLFFRSY D EK++G  + E F +P R +T+ ++HG+YDKL
Sbjct: 886  NQEDSVVMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEMFEKPTRGDTLRLKHGTYDKL 945

Query: 506  DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVL 563
            D DG+  PG RVSGED+IIGKT+PI+ D A+ GQ   ++ +RD S  LR +E+G+VD V+
Sbjct: 946  DADGIIAPGIRVSGEDIIIGKTSPINPDNAELGQRQQQHVKRDASTPLRSTESGIVDSVV 1005

Query: 564  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
            LTTN DG+R+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGITPDII+N
Sbjct: 1006 LTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIIN 1065

Query: 624  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
            PHAIPSRMTI  L+EC++ KVA   G EGDATPFTDVTVD++S  L + GYQ RGFE +Y
Sbjct: 1066 PHAIPSRMTIAHLVECLLSKVATLKGLEGDATPFTDVTVDSVSDLLREQGYQSRGFEILY 1125

Query: 684  NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 743
            +GHTGR+L A  F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEM
Sbjct: 1126 HGHTGRKLRAQCFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEM 1185

Query: 744  ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQ 802
            ERDCMIAHGA+ FLKERLF+ SDAYRVH+CE CGL+  IANL K SFECR CKNKT I Q
Sbjct: 1186 ERDCMIAHGAASFLKERLFEVSDAYRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQ 1245

Query: 803  VHIPYACKLLFQELMAMAIAPRMLT 827
            VH+PYA KLLFQELM+M IA RM T
Sbjct: 1246 VHMPYAAKLLFQELMSMGIASRMFT 1270


>gi|367041247|ref|XP_003651004.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
 gi|346998265|gb|AEO64668.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
          Length = 1282

 Score = 1138 bits (2944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/868 (62%), Positives = 672/868 (77%), Gaps = 44/868 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   + CET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 410  MLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRG 469

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            + R++T+D+ +Y+++C+D  K+ +L   IK  T+T+GLKYSLATGNWG Q  A  + AGV
Sbjct: 470  IIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNGLKYSLATGNWGDQKKAMSSTAGV 529

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 530  SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 589

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VG+ A PI+EF+     E  EE  P   P ATK+FVNG WVG+H+DP+ LV  
Sbjct: 590  SLMCYVSVGTPAEPIVEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVSL 649

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKK 289
            ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF VE++          +L++ K
Sbjct: 650  VQGLRRKNVISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEDNGANGVEKGQLILNK 709

Query: 290  RDIIALQQRES-----PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--------- 335
              I  L+  +      P+  GW  L+  G IEY+D EEEET MI M+  DL         
Sbjct: 710  EHIQRLEADKELGKYHPDYWGWKGLLRSGAIEYLDAEEEETAMICMSPEDLDMFRLSKMG 769

Query: 336  -------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                         ++ +++P       YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQ
Sbjct: 770  FNVTDTSGQGNSRIRTKINPT---THMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQ 826

Query: 383  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
            SAMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 827  SAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACY 886

Query: 443  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
            SGYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P+RS+T+ ++H +Y
Sbjct: 887  SGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINIIEKFEKPNRSDTLRLKHSTY 946

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVD 560
            DKLD DG+  PG RVSGED+IIGKT PI+ + A+ GQ ++++ +RD S  LR +E+G+VD
Sbjct: 947  DKLDMDGIVAPGVRVSGEDIIIGKTCPINPENAELGQRSTQHVKRDASTPLRSTESGIVD 1006

Query: 561  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
             V+LTTN DG+R+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+T+ QEDMP+T EGITPDI
Sbjct: 1007 SVILTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTFRQEDMPFTCEGITPDI 1066

Query: 621  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
            I+NPHAIPSRMTI  LIEC++ KV+   G EGDATPFT+VTVD++S  L + GYQ RGFE
Sbjct: 1067 IINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTEVTVDSVSALLREHGYQSRGFE 1126

Query: 681  TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
             MY+GHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGP+QI+TRQP EGR+RDGGLRF
Sbjct: 1127 IMYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRF 1186

Query: 741  GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTD 799
            GEMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT 
Sbjct: 1187 GEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTK 1246

Query: 800  IVQVHIPYACKLLFQELMAMAIAPRMLT 827
            I QVHIPYA KLLFQELM+M IA RM T
Sbjct: 1247 IAQVHIPYAAKLLFQELMSMNIASRMFT 1274


>gi|302417061|ref|XP_003006362.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
            VaMs.102]
 gi|261355778|gb|EEY18206.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
            VaMs.102]
          Length = 1260

 Score = 1137 bits (2941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/864 (62%), Positives = 670/864 (77%), Gaps = 38/864 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY+ H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 389  LPHISQSEGSETRKAFFLGYMTHKLLQCALGRRDIDDRDHFGKKRLDLAGPLLAKLFRTI 448

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++ +++  ++++CV++ +  +L   +K +T+++GLKYSLATGNWG Q  AA + AGVS
Sbjct: 449  VRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGDQKKAASSTAGVS 508

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 509  QVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 568

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VG+ A PI++++ + G E  EE  P   P ATK+F+NG WVG+H+DP +LV  +
Sbjct: 569  LMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQDPRVLVPDV 628

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-------QRLLIKKRDII 293
            +  RRR  ++ EV +VRDIR +E +I++D GR  RP+F+VE+       Q  L+ ++D++
Sbjct: 629  QGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSHHGAVPQGSLVLQKDLV 688

Query: 294  --ALQQRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP---- 342
                 Q+E+P D       W  L   G IEY+D EEEET+MI MT  DL   RL      
Sbjct: 689  NEMRDQQENPPDNPEDKITWQTLAHSGIIEYLDAEEEETSMICMTPEDLELYRLRKAGHE 748

Query: 343  -EEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
             EE  ++                YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG
Sbjct: 749  VEEDISEGPNRRLRTKIAKTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMG 808

Query: 387  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
            KQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NA+VAIACYSGYN
Sbjct: 809  KQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAVVAIACYSGYN 868

Query: 447  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
            QEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P R++T+ ++HG+YDKLD
Sbjct: 869  QEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFRNDTLRLKHGTYDKLD 928

Query: 507  DDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLL 564
            DDG+  PG RVSGED+IIGKT+PI+ D  + GQ + ++ +RD S  LR +E G++D V+L
Sbjct: 929  DDGIVAPGVRVSGEDIIIGKTSPINPDNQELGQRTMQHVKRDASTPLRSTENGIIDSVIL 988

Query: 565  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 624
            TTN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NP
Sbjct: 989  TTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTSEGITPDIIINP 1048

Query: 625  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 684
            HAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L   GYQ RGFE MYN
Sbjct: 1049 HAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVTVDSVSQLLRDQGYQSRGFEVMYN 1108

Query: 685  GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 744
            GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEME
Sbjct: 1109 GHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEME 1168

Query: 745  RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQV 803
            RDCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K SFECR CKNKT I Q+
Sbjct: 1169 RDCMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQI 1228

Query: 804  HIPYACKLLFQELMAMAIAPRMLT 827
            HIPYA KLLFQEL +M IA RM T
Sbjct: 1229 HIPYAAKLLFQELQSMNIAARMFT 1252


>gi|346971009|gb|EGY14461.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium dahliae
            VdLs.17]
          Length = 1260

 Score = 1137 bits (2941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/864 (62%), Positives = 670/864 (77%), Gaps = 38/864 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY+ H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 389  LPHISQSEGSETRKAFFLGYMTHKLLQCALGRRDIDDRDHFGKKRLDLAGPLLAKLFRTI 448

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++ +++  ++++CV++ +  +L   +K +T+++GLKYSLATGNWG Q  AA + AGVS
Sbjct: 449  VRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGDQKKAASSTAGVS 508

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 509  QVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 568

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VG+ A PI++++ + G E  EE  P   P ATK+F+NG WVG+H+DP +LV  +
Sbjct: 569  LMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQDPRVLVPDV 628

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-------QRLLIKKRDII 293
            +  RRR  ++ EV +VRDIR +E +I++D GR  RP+F+VE+       Q  L+ ++D++
Sbjct: 629  QGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSHHGAVPQGSLVLQKDLV 688

Query: 294  --ALQQRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP---- 342
                 Q+E+P D       W  L   G IEY+D EEEET+MI MT  DL   RL      
Sbjct: 689  NEMRDQQENPPDNPEDKITWQTLAHSGIIEYLDAEEEETSMICMTPEDLELYRLRKAGHE 748

Query: 343  -EEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
             EE  ++                YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG
Sbjct: 749  VEEDISEGPNRRLRTKIAKTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMG 808

Query: 387  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
            KQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NA+VAIACYSGYN
Sbjct: 809  KQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAVVAIACYSGYN 868

Query: 447  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
            QEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P R++T+ ++HG+YDKLD
Sbjct: 869  QEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFRNDTLRLKHGTYDKLD 928

Query: 507  DDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLL 564
            DDG+  PG RVSGED+IIGKT+PI+ D  + GQ + ++ +RD S  LR +E G++D V+L
Sbjct: 929  DDGIVAPGVRVSGEDIIIGKTSPINPDNQELGQRTMQHVKRDASTPLRSTENGIIDSVIL 988

Query: 565  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 624
            TTN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NP
Sbjct: 989  TTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTSEGITPDIIINP 1048

Query: 625  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 684
            HAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L   GYQ RGFE MYN
Sbjct: 1049 HAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVTVDSVSQLLRDQGYQSRGFEVMYN 1108

Query: 685  GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 744
            GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEME
Sbjct: 1109 GHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEME 1168

Query: 745  RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQV 803
            RDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I Q+
Sbjct: 1169 RDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQI 1228

Query: 804  HIPYACKLLFQELMAMAIAPRMLT 827
            HIPYA KLLFQEL +M IA RM T
Sbjct: 1229 HIPYAAKLLFQELQSMNIAARMFT 1252


>gi|342888977|gb|EGU88188.1| hypothetical protein FOXB_01326 [Fusarium oxysporum Fo5176]
          Length = 1270

 Score = 1136 bits (2938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/880 (62%), Positives = 663/880 (75%), Gaps = 55/880 (6%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 384  LPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 443

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV++ ++ NL  AIK  T+++GLKYSLATGNWG Q  AA + AGVS
Sbjct: 444  IRRINTELSNYLKRCVESNRNFNLTVAIKPSTLSNGLKYSLATGNWGDQKKAASSTAGVS 503

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 504  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 563

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS A P++EF+   G E  EE  P   P ATKIFVNG WVG+H DP+ LV  +
Sbjct: 564  LMCYVSVGSPADPLIEFMINRGMEVVEEYEPTRYPHATKIFVNGSWVGVHADPKHLVNQV 623

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKKR 290
               RR+  V  EV +VRDIR +E +I++D GR  RP+F V ++          +L++ K 
Sbjct: 624  LDTRRKSYVQFEVSLVRDIRDREFKIFSDAGRVMRPVFTVHQEDDYENNITKGQLVLTKD 683

Query: 291  DI--IALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLV-------- 336
             +  +A +Q E P +     GW  L+ +G +EY+D EEEET MI MT  DL         
Sbjct: 684  HVNRLAQEQAEPPANPADKFGWDGLIREGAVEYLDAEEEETAMICMTPEDLELYREQKND 743

Query: 337  QARLHPEEAYADT-------------------------YTHCEIHPSLILGVCASIIPFP 371
            +A L  EE  A                           YTHCEIHPS+ILG+CASIIPFP
Sbjct: 744  EATLTEEEKRAKQEAEKREQEEDRNKRLKTKVNPTTHMYTHCEIHPSMILGICASIIPFP 803

Query: 372  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
            DHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 804  DHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPA 863

Query: 432  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
            G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P +
Sbjct: 864  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFQ 923

Query: 492  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR---YTRRDHS 548
              T+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI Q E Q   +R   + RRD S
Sbjct: 924  QTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQ-ENQDLGTRTQSHQRRDIS 982

Query: 549  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
              LR +E G+VDQV+LT NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 983  TPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQED 1042

Query: 609  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
            MP++ EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ 
Sbjct: 1043 MPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSEL 1102

Query: 669  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
            L K GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP
Sbjct: 1103 LRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQP 1162

Query: 729  AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKN 787
             EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K 
Sbjct: 1163 VEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQ 1222

Query: 788  SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            SFECR CKNKT I Q+HIPYA KLLFQEL AM IA RM T
Sbjct: 1223 SFECRPCKNKTKIAQIHIPYAAKLLFQELQAMNIAARMFT 1262


>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
            [Piriformospora indica DSM 11827]
          Length = 1223

 Score = 1135 bits (2936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/852 (64%), Positives = 661/852 (77%), Gaps = 29/852 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  E +KAY+ GY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 363  LLPHISMEEGNEARKAYFVGYMIHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSTLFRM 422

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRK+ +DV  Y+QKCV++GK  ++  AIK  TI++GLKYSLATGNWG Q NA  ++AGV
Sbjct: 423  LFRKVVKDVYRYLQKCVESGKAFDVGRAIKLGTISNGLKYSLATGNWGDQQNAMSSKAGV 482

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 483  SQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 542

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VGS + P+ EFL+EWG E  EE + +  P +TK+F+NG W+G+HR+P  L+ T
Sbjct: 543  SLMACISVGSYSAPVGEFLDEWGMEALEENAQSDRP-STKVFLNGVWMGVHREPTQLLNT 601

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ-QR 298
            L+ LRR   ++ EV VVRDIR KELRIYTD GR  RPLF+VEK +LLI    +  L+ ++
Sbjct: 602  LKHLRRTEAIHPEVSVVRDIREKELRIYTDSGRVCRPLFVVEKDKLLITPEQVARLRDEK 661

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-----LHPEEAY------- 346
            + P    W +L   G +E +D EEEET MI M+  DL  AR      H E+ Y       
Sbjct: 662  DDPAGYRWDNLFKDGVVELLDAEEEETVMICMSPEDL-DARSSGQVYHTEDMYDPSSRVK 720

Query: 347  ----ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
                A +Y+HCEIHPS+ILGVCASI+PFPDHNQSPRNTYQSAMGKQAMGI ++N+  RMD
Sbjct: 721  TIIKAGSYSHCEIHPSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGISLSNFLVRMD 780

Query: 403  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
            T+A +LYYPQKPL TTRA+E L FR LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG 
Sbjct: 781  TMANILYYPQKPLATTRALEWLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGL 840

Query: 463  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 522
            FRS+++RSY D EK  G +  E+F +P R  T+ M+HG+YDKLDDDGL  PG  V GED+
Sbjct: 841  FRSIYYRSYMDMEKTAGQITLEEFEKPSRDTTLRMKHGNYDKLDDDGLIAPGMNVIGEDI 900

Query: 523  IIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 580
            IIGKT P+  D  + GQ   R+TRRD S  L+ +E+G++D VL+T + +G +FVK+RVRS
Sbjct: 901  IIGKTAPLPPDSQELGQRTDRHTRRDVSTPLKSTESGIIDHVLITVDGEGSKFVKIRVRS 960

Query: 581  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 640
             RIPQ+GDKF+SRHGQKGT+G+ Y QEDMP++ +GI PD+I+NPHAIPSRMTIG L+EC+
Sbjct: 961  TRIPQVGDKFASRHGQKGTIGILYRQEDMPFSADGIVPDLIINPHAIPSRMTIGHLVECL 1020

Query: 641  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
            + KVA   G+EGDATPFTD+TV+ +S AL   GYQ RG E MY+GHTG++L A ++LGPT
Sbjct: 1021 LSKVATLNGQEGDATPFTDLTVEQVSHALRAAGYQSRGLEVMYHGHTGKKLQAQVYLGPT 1080

Query: 701  YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME-------RDCMIAHGA 753
            YYQRLKHMV+DKIHSR RGPVQILTRQP EGRSRDGGLRFGEME       RDCMI+HG 
Sbjct: 1081 YYQRLKHMVEDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMEASQNSLIRDCMISHGI 1140

Query: 754  SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 813
            + FLKERLFD SDAYR+HVC+ CGL AIANLKK SFECR CKNKT + Q++IPYA KLL 
Sbjct: 1141 AAFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFECRSCKNKTAVSQLYIPYAAKLLI 1200

Query: 814  QELMAMAIAPRM 825
            QEL AM IA R+
Sbjct: 1201 QELQAMNIAARL 1212


>gi|388855609|emb|CCF50832.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Ustilago
            hordei]
          Length = 1241

 Score = 1135 bits (2935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/852 (63%), Positives = 670/852 (78%), Gaps = 28/852 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+ T +   TKKAY+FGY+IHRLLL AL RR  DDRDH+G KR+DL GPL+  LFRM
Sbjct: 390  MLPHISTSEGSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRM 449

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRK+TRDV  ++QKCV+  ++ ++Q A+K+ TIT+GL+YSLATGNWG Q  A   +AGV
Sbjct: 450  LFRKVTRDVYRHLQKCVEEHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGV 509

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR  +ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 510  SQVLNRFAFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 569

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  +TVG+ + PI+EFLEE+G ++  ++  A   +ATKIFVNG W+G H DP  LV T
Sbjct: 570  SLMATVTVGTPSAPIVEFLEEFGLDSLVDMQLAH-AKATKIFVNGVWMGTHDDPAQLVDT 628

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ--RLLIKKRDIIALQQ 297
            LR LRR+ D++ EV VVRDIR +ELRIYTD  R  RP+FIV      LLIKKR +  + Q
Sbjct: 629  LRDLRRKDDISHEVSVVRDIRERELRIYTDASRVLRPVFIVNPHDMTLLIKKRHVEMIGQ 688

Query: 298  R--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----------LHPEEA 345
               ++ E+  W  L+ +G IEY+D EEEE+ +I M+  DL Q+R          L+  + 
Sbjct: 689  TIPQTGEEFRWTHLIQEGVIEYLDAEEEESVLICMSTTDLEQSREYKARNGQINLNSADP 748

Query: 346  YA----------DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
             A          DT+THCEIHP+++LG+CASI+PFPDHNQSPRN YQSAMGKQA+GI ++
Sbjct: 749  SARLKSVHTIAPDTWTHCEIHPAMVLGICASIVPFPDHNQSPRNVYQSAMGKQAIGIPIS 808

Query: 396  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
            N+  R D++ ++LYYPQKPL TTR+MEHL FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 809  NFISRADSMNHILYYPQKPLGTTRSMEHLRFRELPAGQNAIVAIMCYSGYNQEDSVIMNQ 868

Query: 456  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
            SSIDRG FRSL++R Y  EEKK+G +  E+F +P R  T+ M+HG+YDK+D DGL  PGT
Sbjct: 869  SSIDRGLFRSLYYRGYMAEEKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLCAPGT 928

Query: 516  RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
            RVSG+DVIIGKT P+  D E  G  S+ +T++D SISL+ +E G++DQVLLTTN+ G +F
Sbjct: 929  RVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKF 988

Query: 574  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
            VKVRVR+ R+PQ GDKF+SRHGQKGT+G+TY QEDMP++ EG+TPDII+NPHAIPSRMTI
Sbjct: 989  VKVRVRNSRVPQTGDKFASRHGQKGTIGITYRQEDMPFSTEGVTPDIIINPHAIPSRMTI 1048

Query: 634  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
            G L+EC++ KVAA  G+EGDATPFT++TV+ +S  L   GYQ RG E MY+GHTGR+L A
Sbjct: 1049 GHLVECLLSKVAALSGQEGDATPFTELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKLQA 1108

Query: 694  MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 753
             ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSR GGLRFGEMERDCMIAHG 
Sbjct: 1109 QVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIAHGI 1168

Query: 754  SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 813
            + FLKER+FD SD YR+HVC+ CGL A+ANLKK ++ECR C+N+T I Q+HIPYA KLL 
Sbjct: 1169 AGFLKERMFDASDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAKLLM 1228

Query: 814  QELMAMAIAPRM 825
            QELM++ +A R+
Sbjct: 1229 QELMSVNVALRL 1240


>gi|408400353|gb|EKJ79435.1| hypothetical protein FPSE_00366 [Fusarium pseudograminearum CS3096]
          Length = 1269

 Score = 1135 bits (2935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/880 (62%), Positives = 660/880 (75%), Gaps = 55/880 (6%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 383  LPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 442

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++ +++  Y+++CV++ ++ NL  AIK  T+++GLKYSLATGNWG Q  AA + AGVS
Sbjct: 443  IRRMNQELSNYLKRCVESNRNFNLNVAIKPGTLSNGLKYSLATGNWGDQKKAASSTAGVS 502

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 503  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 562

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS   P+++F+   G E  EE  P   P ATK+FVNG WVG+H +P  LV ++
Sbjct: 563  LMCYVSVGSPGEPLIDFMVSRGMEVVEEYEPTRYPHATKVFVNGSWVGVHPEPRALVNSV 622

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR---------LLIKKRD 291
               RR+  +  EV +VRDIR +E +I++D GR  RP+F V+++           L+  +D
Sbjct: 623  LETRRKSYLQFEVSLVRDIRDREFKIFSDAGRVMRPVFTVQQEDDYETGLTKGQLVLTKD 682

Query: 292  I---IALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLV-------- 336
            +   IA +Q E P D     GW  L+  G +EYID EEEET MI MT  DL         
Sbjct: 683  LVNKIAQEQAEPPSDPSERIGWQGLIRSGAVEYIDAEEEETAMICMTPEDLEIYREQKRD 742

Query: 337  QARLHPEEAYAD-------------------------TYTHCEIHPSLILGVCASIIPFP 371
            +  L  EE  A                           YTHCEIHPS+ILG+CASIIPFP
Sbjct: 743  EVNLTEEEKQAKLEAEKREQEEERNKRLKTKVNPTTHMYTHCEIHPSMILGICASIIPFP 802

Query: 372  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
            DHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 803  DHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPA 862

Query: 432  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
            G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P +
Sbjct: 863  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFQ 922

Query: 492  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR---YTRRDHS 548
              T+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI Q E Q   +R   + RRD S
Sbjct: 923  QTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQ-ENQDLGTRTQTHQRRDIS 981

Query: 549  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
              LR +E G+VDQV+LT NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 982  TPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQED 1041

Query: 609  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
            MP++ EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S  
Sbjct: 1042 MPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSDI 1101

Query: 669  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
            L K GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP
Sbjct: 1102 LRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQP 1161

Query: 729  AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKN 787
             EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K 
Sbjct: 1162 VEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQ 1221

Query: 788  SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            SFECR CKNKT I Q+HIPYA KLLFQEL AM IA RM T
Sbjct: 1222 SFECRPCKNKTKIAQIHIPYAAKLLFQELQAMNIAARMFT 1261


>gi|330922612|ref|XP_003299905.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
 gi|311326219|gb|EFQ92000.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
          Length = 1262

 Score = 1134 bits (2933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/874 (61%), Positives = 669/874 (76%), Gaps = 47/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV+N +D N+Q A+KA TIT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVYKYLQRCVENNQDFNVQMAVKASTITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P ATK+FVNG WVG+H + + LV  
Sbjct: 560  SLMCYVSVGSDATPIVDFMTQRNMQLLEEYDQNQSPDATKVFVNGVWVGVHSNAQQLVTV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  LI  ++I 
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDVRKPNRNHLIFTKEIS 679

Query: 293  --IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              +  +Q E+ +  GW +            L+  G +EY+D EEEET MI+ +  DL + 
Sbjct: 680  NKLKSEQMEASQRQGWSEEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEW 739

Query: 338  --------------------ARLHP-EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 RL P  +    +YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  REMKMGLPMTDHSLEGSQRLRRLKPLPDPRIHSYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D A+ GQ +  +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIATDAAELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSRE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTDVTVD +S+ L   GY
Sbjct: 1040 GLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDVTVDQVSQLLENAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG+++   IFLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IANLKKN +ECR 
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIANLKKNLYECRP 1219

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1220 CHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|322711689|gb|EFZ03262.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium anisopliae
            ARSEF 23]
          Length = 1262

 Score = 1133 bits (2931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/867 (62%), Positives = 657/867 (75%), Gaps = 42/867 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 389  LPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 448

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   IK  T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 449  IRRMNTELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVS 508

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 509  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 568

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS A P++EF+   G E  EE  P   P ATKIFVNG WVG+H+DP+ LV  +
Sbjct: 569  LMCYVSVGSPAEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGVHQDPKHLVSQV 628

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV----------EKQRLLIKKR 290
               RR+  +  EV +VR+IR +E +I++D GR  RP+F V          EK  L++ K 
Sbjct: 629  LDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETGIEKGHLVLTKE 688

Query: 291  DI--IALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             +  +A +Q E PED     GW  L+  G +EY+D EEEET+MI MT  DL   RL    
Sbjct: 689  LVNKLAKEQAEPPEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAG 748

Query: 345  AYAD--------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
               D                     YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 749  VALDDDIGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 808

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 809  MGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSG 868

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   +T+ M+HG+YDK
Sbjct: 869  YNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDK 928

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR---YTRRDHSISLRHSETGMVDQ 561
            LDDDG+  PG RVSGED+IIGKT PI Q E+Q   +R   + RRD S  LR +E G+VD 
Sbjct: 929  LDDDGIVAPGVRVSGEDIIIGKTAPIDQ-ESQDLGTRTSVHQRRDISTPLRSTENGIVDS 987

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V+LT NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPDII
Sbjct: 988  VILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDII 1047

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L K GYQ RGFE 
Sbjct: 1048 INPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEI 1107

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1108 MYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1167

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I
Sbjct: 1168 EMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKI 1227

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1228 AQIHIPYAAKLLFQELQSMNIAARMFT 1254


>gi|347828662|emb|CCD44359.1| RPB2, DNA-dependent RNA polymerase II second largest subunit
            [Botryotinia fuckeliana]
          Length = 1260

 Score = 1133 bits (2931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/871 (62%), Positives = 670/871 (76%), Gaps = 43/871 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 383  LLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRN 442

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR+LT DV  Y+Q+CV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q  AA + AGV
Sbjct: 443  LFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGV 502

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 503  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 562

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVGIHRDP  LVK 
Sbjct: 563  ALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGIHRDPAHLVKC 622

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            ++ LRR   ++ EV ++R+IR +E +I+TD GR  RPL +++       K  L++ K  I
Sbjct: 623  VQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSANKGNLVLNKDHI 682

Query: 293  IALQ----------QRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
              L+          + E   +G  G+  L+  G +EY+D EEEET MI+MT  DL  +R 
Sbjct: 683  RRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQ 742

Query: 340  ------LHPEEA-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                  + P+E+              A  +THCEIHPS+ILG+CASIIPFPDHNQSPRN 
Sbjct: 743  LQAGYQIRPDESGDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNC 802

Query: 381  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
            YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI 
Sbjct: 803  YQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIM 862

Query: 441  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
            CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+T+ ++ G
Sbjct: 863  CYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQG 922

Query: 501  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
            +YDKLDDDG+  PG RV+G D+IIGKT PI+ D E  GQ ++ + +RD S  LR +E+G+
Sbjct: 923  TYDKLDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGL 982

Query: 559  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
            VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY Q+DMP+T EG+ P
Sbjct: 983  VDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVP 1042

Query: 619  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
            D+I+NPHAIPSRMTI  LIEC + KV+   G EGDATPFT+VTVD++SK L   GY  RG
Sbjct: 1043 DLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPFTEVTVDSVSKLLRAHGYHSRG 1102

Query: 679  FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
            FE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGL
Sbjct: 1103 FEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGL 1162

Query: 739  RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNK 797
            RFGEMERDCMI+HGAS FLKERLF+ SDA+RVH+C+ CGL+  IA +   SFECR CKNK
Sbjct: 1163 RFGEMERDCMISHGASAFLKERLFEVSDAFRVHICDICGLMTPIAKINTGSFECRPCKNK 1222

Query: 798  TDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            T I Q+HIPYA KLLFQEL AM IA RM TK
Sbjct: 1223 TKISQIHIPYAAKLLFQELAAMNIATRMFTK 1253


>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
          Length = 1210

 Score = 1133 bits (2931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/856 (63%), Positives = 662/856 (77%), Gaps = 44/856 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 355  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 414

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLT+D+  Y+Q+CV+NG D N+  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 415  LFKKLTKDIYNYMQRCVENGGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGV 474

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+ + PIL FL ++G E  E+  P+  P +T++FVNG WVG+HRDP  LV  
Sbjct: 535  SLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDF 594

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L I K  +
Sbjct: 595  MRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHV 654

Query: 293  IALQQRESPEDGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDLV------- 336
              L + +  ++           W  LVA G +EY+D EEEET MI+MT +D+        
Sbjct: 655  KQLLRSDELDEDDEDYENSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSVS 714

Query: 337  ---QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
               Q ++  EE   D              TYTHCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 715  ESEQQKIQLEEQELDPGKRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPRN 774

Query: 380  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
            TYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 775  TYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAI 834

Query: 440  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            ACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++H
Sbjct: 835  ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKH 894

Query: 500  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
            G+Y+KLD+DGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 895  GTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTESG 954

Query: 558  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            +VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI 
Sbjct: 955  IVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIV 1014

Query: 618  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
            PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + IS  L   GYQ R
Sbjct: 1015 PDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTTEQISTLLRDHGYQSR 1074

Query: 678  GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
            GFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGG
Sbjct: 1075 GFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1134

Query: 738  LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 796
            LRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKN
Sbjct: 1135 LRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKN 1194

Query: 797  KTDIVQVHIPYACKLL 812
            KT+I Q+HIPYA KLL
Sbjct: 1195 KTNIYQIHIPYAAKLL 1210


>gi|120407526|gb|AAY82000.2| RNA polymerase II second largest subunit [Coleochaete scutata]
          Length = 702

 Score = 1133 bits (2931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/679 (80%), Positives = 591/679 (87%), Gaps = 4/679 (0%)

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALM YI+VGSAA PILEFLEEW TEN EEI P  IP  TKIFVNG
Sbjct: 1   AETPEGQACGLVKNLALMAYISVGSAAAPILEFLEEWTTENLEEIHPNDIPNTTKIFVNG 60

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 284
            WVGIHRDP+MLVKTL++LRR+VDVNTEVGVVRDIRLKELR+YTDYGRC RPLF V+ QR
Sbjct: 61  VWVGIHRDPDMLVKTLQKLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCCRPLFXVDNQR 120

Query: 285 LLIKKRDIIALQQRESP-EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 343
           L+IKK  I  L     P ED GW+ LV  G IEY+DTEEEETTMISMTINDLV AR +PE
Sbjct: 121 LVIKKHHIEELLDPTLPDEDRGWNKLVELGLIEYVDTEEEETTMISMTINDLVSARQNPE 180

Query: 344 EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN-YQFRMD 402
           EAY+ TYTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI     ++   D
Sbjct: 181 EAYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGILCHKLFRLAXD 240

Query: 403 TLAYV-LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 461
                    PQKPL TTRAMEHLHFRQLPAG NAIV I CYSGYNQEDSVIMNQSSIDRG
Sbjct: 241 HXGVCPCTIPQKPLATTRAMEHLHFRQLPAGQNAIVGILCYSGYNQEDSVIMNQSSIDRG 300

Query: 462 FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 521
           FFRS+ +RSYRDEEKK G+LVKE+F +P R   MGMRHGSYDKLDDDG+APPGTRVS ED
Sbjct: 301 FFRSISYRSYRDEEKKQGSLVKEEFEKPSRETVMGMRHGSYDKLDDDGIAPPGTRVSAED 360

Query: 522 VIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 581
           VIIGKTTP+  D+    A R+T+RD S SL+HSE+GMVDQVLLTTN  GLRFVK+RVRSV
Sbjct: 361 VIIGKTTPLP-DDGNEAARRFTKRDQSTSLKHSESGMVDQVLLTTNDQGLRFVKMRVRSV 419

Query: 582 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 641
           RIPQIGDKF+SRHGQKGTVG+TYTQEDMP+T EGI PDIIVNPHAIPSRMTIG LIEC++
Sbjct: 420 RIPQIGDKFASRHGQKGTVGITYTQEDMPFTQEGIVPDIIVNPHAIPSRMTIGHLIECLL 479

Query: 642 GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 701
           GKVA H+G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L A IFLGPTY
Sbjct: 480 GKVATHIGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLQAQIFLGPTY 539

Query: 702 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERL 761
           YQRLKHMVDDKIHSR RGPVQILTRQPAEGR++DGGLRFGEMERDCMIAHGA+HF+KERL
Sbjct: 540 YQRLKHMVDDKIHSRARGPVQILTRQPAEGRAKDGGLRFGEMERDCMIAHGAAHFMKERL 599

Query: 762 FDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 821
           FDQSDAYRVHVCE CGLIAIANLKK +FECRGCKNKTDIVQVHIPYACKLLFQELMAMAI
Sbjct: 600 FDQSDAYRVHVCEICGLIAIANLKKGTFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 659

Query: 822 APRMLTKEDTKQSKDHKKK 840
           APRM T+E+     +  +K
Sbjct: 660 APRMFTREEKANESEGTRK 678


>gi|452982910|gb|EME82668.1| hypothetical protein MYCFIDRAFT_136855 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1248

 Score = 1133 bits (2930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/871 (61%), Positives = 671/871 (77%), Gaps = 44/871 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY+++RLL CALGR +EDDRDH+G KRLDLAGPL+  +FR+
Sbjct: 370  FLPHISQEEGSETRKAFFLGYMVNRLLQCALGRTSEDDRDHFGKKRLDLAGPLMAQVFRL 429

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
             F++L ++++ Y+ +CV+ G++ N+  A+K   ITSGL+Y LATGNWG Q  A+ ++AGV
Sbjct: 430  KFQQLVKEMKQYLHRCVETGREFNITLAVKTNIITSGLRYCLATGNWGDQKKASQSKAGV 489

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 490  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 549

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y+TVG+  +P+++F+ + G +  EE  P + P ATK+F+NG WVG+HR+   L  T
Sbjct: 550  SLMCYVTVGTPGFPLIDFMRQRGMDLLEEYDPVINPGATKVFLNGTWVGVHRNAGHLADT 609

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--------KQRLLIKKRD 291
            LR LRR+  ++ EV ++RD+R +E+R++TD GR  RPLF+V+        K  L++ +  
Sbjct: 610  LRSLRRKGLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNRTEAPNNKGSLVLDQTH 669

Query: 292  IIALQQRE---------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
            +  L + +         S E+      GW  LV  G +EY+D EEEET MISMT  DL +
Sbjct: 670  LAKLAEDQDMLQNLEGVSEEEREKHIFGWKGLVDGGVVEYLDAEEEETAMISMTPEDLEE 729

Query: 338  ARLH----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
             +      PEEA  D              T+THCEIHP++ILG+CASIIPFPDHNQSPRN
Sbjct: 730  HKAMRAGMPEEARDDPHRRIKQPPNPFVRTWTHCEIHPAMILGICASIIPFPDHNQSPRN 789

Query: 380  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
            TYQSAMGKQAMG+ +TNY  RMDT+A VLYYPQKPL TTR+ME L FR LPAG NAIVAI
Sbjct: 790  TYQSAMGKQAMGVTLTNYNVRMDTMANVLYYPQKPLATTRSMEFLRFRDLPAGQNAIVAI 849

Query: 440  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            +CYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+EK++G  V E F +P R++TM M+ 
Sbjct: 850  SCYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYMDQEKRVGMSVVEQFEKPVRADTMRMKQ 909

Query: 500  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
            G+YDKLD+DG+  PG+RVSG+DVIIGKT P+  D E  GQ ++ + +RD S  LR +E G
Sbjct: 910  GTYDKLDEDGIISPGSRVSGDDVIIGKTAPMPPDAEELGQRTKLHVKRDVSTPLRSTENG 969

Query: 558  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            +VDQVLLTTN +GLRFVKVR R  ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T +G+T
Sbjct: 970  IVDQVLLTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTADGLT 1029

Query: 618  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
            PDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVTV +IS+ L   G+Q R
Sbjct: 1030 PDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPFTDVTVTSISQILADHGFQQR 1089

Query: 678  GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
            GFE MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGG
Sbjct: 1090 GFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGG 1149

Query: 738  LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 796
            LRFGEMERDCMIAHGAS FLKERL D SDA+RVH+CE CGL+  IA++KK  FECR C+N
Sbjct: 1150 LRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICEICGLMTPIASIKKQQFECRPCRN 1209

Query: 797  KTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            KT I QV IPYA KLLFQEL AM +A RM T
Sbjct: 1210 KTKIAQVIIPYAAKLLFQELAAMNVATRMFT 1240


>gi|255955085|ref|XP_002568295.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590006|emb|CAP96165.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1255

 Score = 1133 bits (2930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/869 (62%), Positives = 666/869 (76%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 379  LLPHISQNEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLASLFRT 438

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++T+D++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA  +AGV
Sbjct: 439  LFTRVTKDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGV 498

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R T+AS+LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 499  SQVLSRYTFASSLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 558

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ A PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 559  ALMCYITVGTPAEPIVDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPSHLVTT 618

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDI 292
            ++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 619  MQNLRRRNMISHEVSLIRDIREREFKIFTDTGRVCRPLFVIDNDPKSENSGGLVLNKEHI 678

Query: 293  IALQQRE------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-- 339
              L+  +      +PE+      GW  LV  G +EY+D EEEET MI MT  DL  +R  
Sbjct: 679  RKLEADKDLPTDMAPEERREQYFGWDGLVRSGAVEYVDAEEEETIMIVMTPEDLEISRQL 738

Query: 340  ----LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  P++  +D              T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 739  QAGYALPDDETSDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 798

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIA 
Sbjct: 799  QSAMGKQAMGVFLTNFSQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIAT 858

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P R +T+GMR G+
Sbjct: 859  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGLQVVERFEKPMRLDTLGMRKGT 918

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDKLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S  LR +E G+V
Sbjct: 919  YDKLDEDGIVAPGVRVSGEDIIIGKTAPLAADAEELGQRTKAHTKIDVSTPLRSTENGIV 978

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T  D L+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 979  DQVLISTGNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPD 1038

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD++S+ L + GYQ RGF
Sbjct: 1039 LIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSRLLREHGYQSRGF 1098

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E M+NGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1099 EVMFNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1158

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  +A LKK  FECR C NK 
Sbjct: 1159 FGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKH 1218

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1219 RISQVHIPYAAKLLFQELASMNIAARMFT 1247


>gi|425773185|gb|EKV11554.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425778788|gb|EKV16893.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1255

 Score = 1132 bits (2929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/869 (62%), Positives = 665/869 (76%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 379  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLASLFRT 438

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++T+D++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA  +AGV
Sbjct: 439  LFTRVTKDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGV 498

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R T++S+LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 499  SQVLSRYTFSSSLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 558

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ A PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 559  ALMCYITVGTPAEPIVDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPSHLVTT 618

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDI 292
            ++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 619  MQNLRRRNMISHEVSLIRDIREREFKIFTDTGRVCRPLFVIDNDPKSENSGGLVLNKEHI 678

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-- 339
              L+  ++ P D           GW  LV  G +EY+D EEEET MI MT  DL  +R  
Sbjct: 679  RKLEADKDLPPDLGPEERREQYFGWDGLVRSGAVEYVDAEEEETIMIVMTPEDLEISRQL 738

Query: 340  ----LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PE+  +D              T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 739  QAGYALPEDETSDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 798

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIA 
Sbjct: 799  QSAMGKQAMGVFLTNFSQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIAT 858

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P R +T+GMR G+
Sbjct: 859  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGLQVVERFEKPMRIDTLGMRKGT 918

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDKLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S  LR +E G+V
Sbjct: 919  YDKLDEDGIVAPGVRVSGEDIIIGKTAPLAADAEELGQRTKAHTKIDVSTPLRSTENGIV 978

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T  D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 979  DQVLVSTGNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPD 1038

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD++S+ L + GYQ RGF
Sbjct: 1039 LIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSRLLREHGYQSRGF 1098

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E M+NGHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1099 EVMFNGHTGRKMVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1158

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  +A LKK  FECR C NK 
Sbjct: 1159 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKH 1218

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1219 RISQVHIPYAAKLLFQELASMNIAARMFT 1247


>gi|322699819|gb|EFY91578.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium acridum
            CQMa 102]
          Length = 1263

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/867 (62%), Positives = 656/867 (75%), Gaps = 42/867 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 390  LPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 449

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   IK  T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 450  IRRMNTELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVS 509

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 510  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 569

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS A P++EF+   G E  EE  P   P ATKIFVNG WVG+H+DP+ LV  +
Sbjct: 570  LMCYVSVGSPAEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGVHQDPKHLVSQV 629

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV----------EKQRLLIKKR 290
               RR+  +  EV +VR+IR +E +I++D GR  RP+F V          EK  L++ K 
Sbjct: 630  LDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETGIEKGHLVLTKD 689

Query: 291  DI--IALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             +  +A +Q E PED     GW  L+  G +EY+D EEEET MI MT  DL   RL    
Sbjct: 690  LVNKLAKEQAEPPEDPSEKIGWEGLIRAGAVEYLDAEEEETAMICMTPEDLELYRLQKAG 749

Query: 345  AYAD--------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
               D                     YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 750  VALDDDIGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 809

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 810  MGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSG 869

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   +T+ M+HG+YDK
Sbjct: 870  YNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDK 929

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR---YTRRDHSISLRHSETGMVDQ 561
            LDDDG+  PG RVSGED+IIGKT PI Q E+Q   +R   + RRD S  LR +E G+VD 
Sbjct: 930  LDDDGIVAPGVRVSGEDIIIGKTAPIDQ-ESQDLGTRTSVHQRRDISTPLRSTENGIVDS 988

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V+LT NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPDII
Sbjct: 989  VILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDII 1048

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L K GYQ RGFE 
Sbjct: 1049 INPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEI 1108

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1109 MYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1168

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I
Sbjct: 1169 EMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKI 1228

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1229 AQIHIPYAAKLLFQELQSMNIAARMFT 1255


>gi|453086391|gb|EMF14433.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Mycosphaerella populorum SO2202]
          Length = 1260

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/871 (61%), Positives = 664/871 (76%), Gaps = 44/871 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ETKKA++ GY+++R+L CALGR  EDDRDH+G KRLDLAGPL+  +FR+
Sbjct: 382  FLPHISQEEGSETKKAFFLGYMVNRMLQCALGRTDEDDRDHFGKKRLDLAGPLMAQVFRL 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
             F++L ++++ Y+ +CV+ G++ N+  A+K   ITSGL+Y LATGNWG Q  A+ ++AGV
Sbjct: 442  KFQQLVKEMKQYLHRCVETGREFNITLAVKTNIITSGLRYCLATGNWGDQKKASSSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y+TVG+   P+++F+ + G +  EE  P + P+ATKI +NG W+G+H +P  L + 
Sbjct: 562  SLMCYVTVGTPGTPLIDFMRQRGMDLLEEYDPVMNPKATKIMLNGTWIGVHHNPGHLAEV 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            LR LRR+  ++ EV ++RD+R +E+R++TD GR  RPLF+V+       +  L++ +  I
Sbjct: 622  LRTLRRKDTISFEVTIIRDVRDREIRVFTDAGRVCRPLFVVDNDPKSSNRGHLVLNQEHI 681

Query: 293  IALQQRESPEDG--------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              LQQ +    G              GW  L  +G +EY+D EEEET MISMT  DL + 
Sbjct: 682  GKLQQDQEILAGLEGVTEEERESSIYGWTGLTREGVVEYLDAEEEETAMISMTPEDLEEH 741

Query: 338  -----------ARLHPE-------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
                       AR  P         A   T+THCEIHP++ILG+CASIIPFPDHNQSPRN
Sbjct: 742  RNMRQGIQWDDARDDPHRRIKPAPNASVRTWTHCEIHPAMILGICASIIPFPDHNQSPRN 801

Query: 380  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
            TYQSAMGKQAMG+ +TNY  RMDT+A VLYYPQKPL TTR+ME L FR LPAG NAIVAI
Sbjct: 802  TYQSAMGKQAMGVTLTNYNVRMDTMANVLYYPQKPLATTRSMEFLRFRDLPAGQNAIVAI 861

Query: 440  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            A YSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+EK++G  V E F +P RS+TM M+ 
Sbjct: 862  ATYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYMDQEKRVGMSVVEAFEKPTRSDTMRMKQ 921

Query: 500  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
            GSYDKLDDDG+  PG RVSG+D+IIGKT P+  D E  GQ ++ + +RD S  LR +E G
Sbjct: 922  GSYDKLDDDGIVAPGARVSGDDIIIGKTAPMPPDAEELGQRTKLHVKRDVSTPLRSTENG 981

Query: 558  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            ++DQVLLTTN +GLRFVKVR R  ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ +G+T
Sbjct: 982  LIDQVLLTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSADGLT 1041

Query: 618  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
            PDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVTV ++S+ L   G+Q R
Sbjct: 1042 PDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPFTDVTVTSVSQILAAAGFQQR 1101

Query: 678  GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
            GFE MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGG
Sbjct: 1102 GFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGG 1161

Query: 738  LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 796
            LRFGEMERDCMIAHGAS FLKERL D SDA+RVH+CE CGL+  IA++KK  FECR CKN
Sbjct: 1162 LRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICEICGLMTPIASIKKQQFECRPCKN 1221

Query: 797  KTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            KT I QV IPYA KLLFQEL AM +A RM T
Sbjct: 1222 KTKIAQVIIPYAAKLLFQELAAMNVATRMFT 1252


>gi|451846356|gb|EMD59666.1| hypothetical protein COCSADRAFT_252499 [Cochliobolus sativus ND90Pr]
          Length = 1262

 Score = 1130 bits (2923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/874 (61%), Positives = 661/874 (75%), Gaps = 47/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV+N +D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P ATK+FVNG WVG+H + + LV  
Sbjct: 560  SLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKR-- 290
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  K   
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEIS 679

Query: 291  -DIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              + A QQ  S   G           GW  L+  G +EY+D EEEET MI+ +  DL + 
Sbjct: 680  NKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 RL P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  REMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTRE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTDVTVD IS+ L   GY
Sbjct: 1040 GVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDVTVDQISQLLEDAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG++L   IFLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA LKK  +ECR 
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAQLKKGLYECRP 1219

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1220 CHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|82621735|gb|ABB86549.1| second largest subunit of RNA polymerase II [Phaeosphaeria nodorum]
 gi|95115801|gb|ABF56195.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115803|gb|ABF56196.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115805|gb|ABF56197.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115807|gb|ABF56198.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115809|gb|ABF56199.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115811|gb|ABF56200.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
          Length = 1262

 Score = 1130 bits (2923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/874 (61%), Positives = 665/874 (76%), Gaps = 47/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV  
Sbjct: 560  SLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R+I 
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLVFDREIS 679

Query: 293  --IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              +  +Q +S    GW D            L+  G IEY+D EEEET MI+ +  DL + 
Sbjct: 680  NRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  RGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + GY
Sbjct: 1040 GLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +ECR 
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRP 1219

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1220 CHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
 gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
          Length = 1261

 Score = 1130 bits (2923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/867 (62%), Positives = 656/867 (75%), Gaps = 42/867 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 388  LPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 447

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   IK  T+++GLKYSLATGNWG Q  AA + AGVS
Sbjct: 448  VRRMNTELSNYLKRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAASSTAGVS 507

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 508  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 567

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS + P++EF+   G E  EE  P   P ATKIFVNG W G+H DP+ LV  +
Sbjct: 568  LMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWCGVHSDPKHLVSQV 627

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR---------LLIKKRD 291
               RR+  +  EV +VRDIR +E ++++D GR  RP+F V+++           L+  +D
Sbjct: 628  LDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHESGIAKGALVLTKD 687

Query: 292  II---ALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
            ++   A +Q E PED     GW  L+  G IEY+D EEEET MI MT  DL   R+    
Sbjct: 688  LVNKLAKEQAEPPEDPSMKIGWEGLIRAGTIEYLDAEEEETAMICMTPEDLDLYRMQKAG 747

Query: 345  AYAD--------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
               D                     YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 748  YVVDDDNTDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 807

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 808  MGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSG 867

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P + +T+ M+HG+YDK
Sbjct: 868  YNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFQQSTLRMKHGTYDK 927

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT---RRDHSISLRHSETGMVDQ 561
            LD+DG+  PG RVSGED+IIGKT PI Q E Q   +R T   RRD S  LR +E G+VD 
Sbjct: 928  LDEDGIVAPGVRVSGEDIIIGKTAPIDQ-ENQDLGTRTTVHQRRDISTPLRSTENGIVDS 986

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V++T NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP++ EG+TPDII
Sbjct: 987  VIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGVTPDII 1046

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L K GYQ RGFE 
Sbjct: 1047 INPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEI 1106

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1107 MYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1166

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K SFECR CKNKT I
Sbjct: 1167 EMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEVCGLMTPIANLSKQSFECRPCKNKTKI 1226

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1227 AQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|95115795|gb|ABF56192.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
 gi|95115797|gb|ABF56193.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score = 1130 bits (2923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/874 (61%), Positives = 665/874 (76%), Gaps = 47/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV  
Sbjct: 560  SLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R+I 
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDREIS 679

Query: 293  --IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              +  +Q +S    GW D            L+  G IEY+D EEEET MI+ +  DL + 
Sbjct: 680  NRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  RGMKMGLPTTERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + GY
Sbjct: 1040 GLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +ECR 
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRP 1219

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1220 CHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|95115793|gb|ABF56191.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/874 (61%), Positives = 665/874 (76%), Gaps = 47/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV  
Sbjct: 560  SLMCYVSVGSDATPIVDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSHAQQLVSV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R+I 
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDREIS 679

Query: 293  --IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              +  +Q +S    GW D            L+  G IEY+D EEEET MI+ +  DL + 
Sbjct: 680  NRLVKEQLDSDTRAGWSDTDIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  RGMKMGLPTNERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + GY
Sbjct: 1040 GLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +ECR 
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRP 1219

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1220 CHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|410610281|gb|AFV74909.1| RNA polymerase II second largest subunit, partial [Balanophora
           laxiflora]
          Length = 569

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/569 (95%), Positives = 563/569 (98%)

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALMV+ITVGSAAYPILEFLEEWGTENFEEISPAVIP ATKIFVNGCWVGIHR
Sbjct: 1   ACGLVKNLALMVHITVGSAAYPILEFLEEWGTENFEEISPAVIPTATKIFVNGCWVGIHR 60

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           DP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK+RLLIKK+D
Sbjct: 61  DPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKKRLLIKKKD 120

Query: 292 IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
           I ALQQRESP++GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV  R++PEEAY++TYT
Sbjct: 121 IQALQQRESPDEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSGRINPEEAYSETYT 180

Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ+RMDTLAYVLYYP
Sbjct: 181 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQYRMDTLAYVLYYP 240

Query: 412 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
           QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 241 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 300

Query: 472 RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
           RDEEKKMGTLVKEDFGRPDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+
Sbjct: 301 RDEEKKMGTLVKEDFGRPDRADTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIT 360

Query: 532 QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
           QD+ QGQASRYTR+DHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361 QDDNQGQASRYTRQDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 592 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
           SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 421 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 480

Query: 652 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
           GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT++IFLGPTYYQRLKHMVDD
Sbjct: 481 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSLIFLGPTYYQRLKHMVDD 540

Query: 712 KIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           KIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 541 KIHSRGRGPVQILTRQPAEGRSRDGGLRF 569


>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
          Length = 1266

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/867 (62%), Positives = 663/867 (76%), Gaps = 40/867 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   + CET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAG LL  LFR 
Sbjct: 392  MLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGSLLAKLFRG 451

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            + RK+ +++  ++++CVD GK  +L+  I+ +T+T+GLKYSLATGNWG Q  A  + AGV
Sbjct: 452  IIRKMYQELMNHLKRCVDTGKHFDLRVGIRHQTLTNGLKYSLATGNWGDQKKAMSSTAGV 511

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T++STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 512  SQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 571

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VG+ A PI+EF+     E  EE  P   P ATKIFVNG WVG+H+DP+ LV  
Sbjct: 572  SLMCYVSVGTPAEPIVEFMIARNMEVLEEYEPLRYPNATKIFVNGSWVGVHQDPKHLVSL 631

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI----------VEKQRLLIKK 289
            ++ LRR+  + +EV +VRDIR +E +I++D GR  RPLF           VEK  L++ K
Sbjct: 632  VQGLRRKGVIQSEVSLVRDIRDREFKIFSDAGRVMRPLFAIEQEDNADSGVEKGMLVLTK 691

Query: 290  RDIIALQ-----QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--- 341
              +  L       ++ P+  GW  +   G IEY+D EEEET MI MT  DL   R+    
Sbjct: 692  EHVQRLDADEGLSKDDPKYFGWDGICDAGAIEYLDAEEEETAMICMTPEDLDNYRMQKAG 751

Query: 342  ---PEEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
               P+E   +                YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQS
Sbjct: 752  YVLPDETNDEDINKRVKTKMNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQS 811

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG ++TNY  RMDT+A VLYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYS
Sbjct: 812  AMGKQAMGFFLTNYPRRMDTMANVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYS 871

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRSLFFR+Y D EK++G    E F +P RS+T+ ++HG+YD
Sbjct: 872  GYNQEDSVIMNQSSIDRGLFRSLFFRAYTDSEKRVGINFVETFEKPFRSDTLRLKHGTYD 931

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHSETGMVDQ 561
            KLDDDG+  PG RVSGED+IIGKT+PI+ D  + GQ ++ + +RD S  LR +E+G++DQ
Sbjct: 932  KLDDDGIVAPGVRVSGEDIIIGKTSPINPDHQEMGQRTQAHVKRDASTPLRSTESGIIDQ 991

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V++TTN D LR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PDII
Sbjct: 992  VVVTTNQDNLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRSEDMPFTTEGILPDII 1051

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KVA   G EGDATPFTDVTVD++S  L + GYQ RGFE 
Sbjct: 1052 INPHAIPSRMTIAHLIECLLSKVATLKGMEGDATPFTDVTVDSVSGLLREHGYQSRGFEI 1111

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MY+GHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1112 MYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1171

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDAYRVH+CE CGL+  IANL K SFECR CKNKT I
Sbjct: 1172 EMERDCMIAHGAAAFLKERLFEVSDAYRVHICEICGLMTPIANLTKQSFECRPCKNKTRI 1231

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             QV IPYA KLLFQEL AM IA RM T
Sbjct: 1232 AQVQIPYAAKLLFQELAAMNIAARMFT 1258


>gi|95115819|gb|ABF56204.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115821|gb|ABF56205.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
          Length = 1262

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/874 (61%), Positives = 664/874 (75%), Gaps = 47/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV  
Sbjct: 560  SLMCYVSVGSDASPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVTV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  RDI 
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENSPSKPNRNQLVFDRDIS 679

Query: 293  --IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              +  +Q +     GW D            L+  G IEY+D EEEET MI+ +  DL + 
Sbjct: 680  NRLVKEQLDHDTRAGWSDTDIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  RGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + GY
Sbjct: 1040 GLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +ECR 
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRP 1219

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1220 CHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|56694370|gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum caudatum]
          Length = 565

 Score = 1129 bits (2921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/566 (94%), Positives = 557/566 (98%), Gaps = 1/566 (0%)

Query: 167 TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 226
           TPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCW
Sbjct: 1   TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCW 60

Query: 227 VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 286
           VGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLL
Sbjct: 61  VGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLL 120

Query: 287 IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 346
           IKK+DI ALQQRE+ E+G WHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY
Sbjct: 121 IKKKDIRALQQRETHEEG-WHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAY 179

Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
           ++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY
Sbjct: 180 SETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 239

Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
           VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL
Sbjct: 240 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 299

Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
           FFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK
Sbjct: 300 FFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 359

Query: 527 TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
           TTPI+QDE+QGQASRYTRRDHS +LRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR+PQI
Sbjct: 360 TTPIAQDESQGQASRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQI 419

Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
           GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA
Sbjct: 420 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 479

Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           HMGKEGDATPFTDVTVD+IS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK
Sbjct: 480 HMGKEGDATPFTDVTVDSISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 539

Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGR 732
           HMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 540 HMVDDKIHSRGRGPVQILTRQPAEGR 565


>gi|95115813|gb|ABF56201.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115815|gb|ABF56202.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115817|gb|ABF56203.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115823|gb|ABF56206.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115825|gb|ABF56207.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
          Length = 1262

 Score = 1129 bits (2921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/874 (61%), Positives = 664/874 (75%), Gaps = 47/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV  
Sbjct: 560  SLMCYVSVGSDASPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVTV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  RDI 
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENSPSKPNRNQLVFDRDIS 679

Query: 293  --IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              +  +Q +     GW D            L+  G IEY+D EEEET MI+ +  DL + 
Sbjct: 680  NRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  RGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + GY
Sbjct: 1040 GLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +ECR 
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRP 1219

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1220 CHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|340517145|gb|EGR47390.1| beta subunit of DNA-directed RNA polymerase [Trichoderma reesei QM6a]
          Length = 1262

 Score = 1129 bits (2921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/867 (62%), Positives = 658/867 (75%), Gaps = 42/867 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 389  LPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 448

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   IK  T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 449  MRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVS 508

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 509  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 568

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS + P++EF+   G E  EE  P   P ATKIFVNG WVGIH+DP+ LV+ +
Sbjct: 569  LMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGIHQDPKHLVQQV 628

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL---------LIKKRD 291
               RR+  +  EV +VR+IR +E +I++D GR  RP+F V++            L+  +D
Sbjct: 629  VDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQDEESDTGIPKGHLVLTKD 688

Query: 292  II---ALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQAR 339
            ++   A +Q E PED     GW  L+  G +EY+D EEEET MI MT  DL      +A 
Sbjct: 689  LVNKLAQEQAEPPEDPSMKIGWEGLIRAGAVEYLDAEEEETAMICMTPEDLELYRAQKAG 748

Query: 340  LHPEEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
            +  EE   D                YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 749  IATEEDVGDDPNKRLKTRTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 808

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 809  MGKQAMGFFLTNYSRRMDTMANILYYPQKPLGTTRSMEFLKFRELPAGQNAIVAIACYSG 868

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   NT+ M+HG+YDK
Sbjct: 869  YNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQNTLRMKHGTYDK 928

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT---RRDHSISLRHSETGMVDQ 561
            LD+DG+  PG RVSGED+IIGKT PI  D  Q   +R T   RRD S  LR +E G+VD 
Sbjct: 929  LDEDGIVAPGVRVSGEDIIIGKTAPIDAD-TQDLGTRTTMHQRRDISTPLRSTENGIVDS 987

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V++T NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII
Sbjct: 988  VIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGITPDII 1047

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L K GYQ RGFE 
Sbjct: 1048 INPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEI 1107

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1108 MYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1167

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I
Sbjct: 1168 EMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKI 1227

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1228 AQIHIPYAAKLLFQELQSMNIAARMFT 1254


>gi|95115799|gb|ABF56194.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
          Length = 1262

 Score = 1129 bits (2920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/874 (61%), Positives = 664/874 (75%), Gaps = 47/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV  
Sbjct: 560  SLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R+I 
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDREIS 679

Query: 293  --IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              +  +Q +     GW D            L+  G IEY+D EEEET MI+ +  DL + 
Sbjct: 680  NRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  RGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + GY
Sbjct: 1040 GLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +ECR 
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRP 1219

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1220 CHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|358395023|gb|EHK44416.1| hypothetical protein TRIATDRAFT_151043 [Trichoderma atroviride IMI
            206040]
          Length = 1261

 Score = 1128 bits (2917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/867 (62%), Positives = 657/867 (75%), Gaps = 42/867 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 388  LPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 447

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   IK  T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 448  MRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVS 507

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 508  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 567

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS + P++EF+   G E  EE  P   P ATKIFVNG WVGIH+DP+ LV  +
Sbjct: 568  LMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGIHQDPKHLVNQV 627

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR---------LLIKKRD 291
               RR+  +  EV ++R+IR +E +I++D GR  RP+F V+++           L+  +D
Sbjct: 628  LDTRRKSYLQYEVSLIREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETGINKGHLVLTKD 687

Query: 292  II---ALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
            ++   A +Q E PED     GW  L+  G +EY+D EEEET+MI MT  DL   RL    
Sbjct: 688  LVNRLAKEQAEPPEDPSMKLGWEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAG 747

Query: 345  AYAD--------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
               D                     YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 748  IATDEDIGDDPNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 807

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 808  MGKQAMGFFLTNYSRRMDTMANILYYPQKPLGTTRSMEFLKFRELPAGQNAIVAIACYSG 867

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   NT+ M+HG+YDK
Sbjct: 868  YNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQNTLRMKHGTYDK 927

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT---RRDHSISLRHSETGMVDQ 561
            LD+DG+  PG RVSGED+IIGKT PI   E Q   +R T   RRD S  LR +E G+VDQ
Sbjct: 928  LDEDGIVAPGVRVSGEDIIIGKTAPIDA-ETQDLGTRTTMHQRRDISTPLRSTENGIVDQ 986

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V++T NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPDII
Sbjct: 987  VIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGLTPDII 1046

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L K GYQ RGFE 
Sbjct: 1047 INPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEI 1106

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1107 MYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1166

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I
Sbjct: 1167 EMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKI 1226

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1227 AQIHIPYAAKLLFQELQSMNIAARMYT 1253


>gi|95115791|gb|ABF56190.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score = 1128 bits (2917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/874 (61%), Positives = 664/874 (75%), Gaps = 47/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV  
Sbjct: 560  SLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R+I 
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLVFDREIS 679

Query: 293  --IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              +  +Q +     GW D            L+  G IEY+D EEEET MI+ +  DL + 
Sbjct: 680  NRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  RGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + GY
Sbjct: 1040 GLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +ECR 
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRP 1219

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1220 CHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|413915216|gb|AFW21470.1| RNA polymerase II beta subunit [Neotyphodium aotearoae]
          Length = 1261

 Score = 1127 bits (2916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/867 (62%), Positives = 655/867 (75%), Gaps = 42/867 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 388  LPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 447

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   IK  T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 448  VRRMNNELSNYLRRCVEGNRHFNLAVGIKPATLSNGLKYSLATGNWGDQKKAMSSTAGVS 507

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 508  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 567

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS + P++EF+   G E  EE  P   P ATKIFVNG WVG+H+DP+ LV  +
Sbjct: 568  LMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGVHQDPKHLVSQV 627

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV----------EKQRLLIKKR 290
               RR+  +  EV +VR+IR +E +I++D GR  RP+F V          EK  L++ K 
Sbjct: 628  LDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETGIEKGHLVLSKE 687

Query: 291  DI--IALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             +  +A +Q E  ED     GW  L+  G +EY+D EEEET+MI MT  DL   RL    
Sbjct: 688  LVNKLAKEQAEPSEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAG 747

Query: 345  AYAD--------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
               D                     YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 748  VALDDDIGDDLNRRLKTRTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 807

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 808  MGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSG 867

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   +T+ M+HG+YDK
Sbjct: 868  YNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDK 927

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT---RRDHSISLRHSETGMVDQ 561
            LD+DG+  PG RVSGED+IIGKT PI Q E Q   +R T   RRD S  LR +E G++D 
Sbjct: 928  LDEDGIVAPGVRVSGEDIIIGKTAPIDQ-ENQDLGTRTTVHQRRDISTPLRSTENGIIDS 986

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V+LT NAD +++VKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPDII
Sbjct: 987  VILTVNADNVKYVKVRVRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDII 1046

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L K GYQ RGFE 
Sbjct: 1047 INPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEI 1106

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1107 MYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1166

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K SFECR CKNKT I
Sbjct: 1167 EMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKI 1226

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1227 AQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|396481244|ref|XP_003841192.1| similar to DNA-dependent RNA polymerase II second largest subunit
            [Leptosphaeria maculans JN3]
 gi|312217766|emb|CBX97713.1| similar to DNA-dependent RNA polymerase II second largest subunit
            [Leptosphaeria maculans JN3]
          Length = 1360

 Score = 1127 bits (2915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/875 (61%), Positives = 663/875 (75%), Gaps = 48/875 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 477  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 536

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV++ +D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 537  LFLKLTKDVFKYLQRCVESNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 596

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 597  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 656

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P ATKIFVNG WVG+H +P  LV  
Sbjct: 657  SLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQSPDATKIFVNGVWVGVHSNPHQLVSV 716

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF++E       + +L+  K   
Sbjct: 717  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVIENDIRKPNRHQLIFTKEIS 776

Query: 290  RDIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDL--- 335
            R +   Q+ +    G           GW  L+  G IEY+D EEEET MI+ +  DL   
Sbjct: 777  RKLTYEQETQDQRQGWSEEDIAAATYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDAW 836

Query: 336  ----------------VQARLHPEEAYADT----YTHCEIHPSLILGVCASIIPFPDHNQ 375
                             + RL   +   DT    YTHCEIHP++ILG+CASIIPFPDHNQ
Sbjct: 837  RDMKTGRAPDERRLKDPKFRLSSIKPKPDTRVHAYTHCEIHPAMILGICASIIPFPDHNQ 896

Query: 376  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
            SPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 897  SPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNA 956

Query: 436  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
            IVAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+
Sbjct: 957  IVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTL 1016

Query: 496  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRH 553
             ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR 
Sbjct: 1017 RLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIATDAQELGQKTTLHTKRDVSTPLRS 1076

Query: 554  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
            +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ 
Sbjct: 1077 TENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSR 1136

Query: 614  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
            EG+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTD+TVD IS+ L   G
Sbjct: 1137 EGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAIEGREGDATPFTDITVDQISEILESKG 1196

Query: 674  YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 733
            YQ RGFE MYNGHTG+++   IFLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+
Sbjct: 1197 YQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRA 1256

Query: 734  RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECR 792
            RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA LKK  +ECR
Sbjct: 1257 RDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAQLKKGQYECR 1316

Query: 793  GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             C+NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1317 PCQNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1351


>gi|410610287|gb|AFV74912.1| RNA polymerase II second largest subunit, partial [Schoepfia
           jasminodora]
          Length = 569

 Score = 1127 bits (2915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/569 (95%), Positives = 560/569 (98%)

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALMVYITVGSAA PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR
Sbjct: 1   ACGLVKNLALMVYITVGSAASPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 60

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           DP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+D
Sbjct: 61  DPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 120

Query: 292 IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
           I  LQQRE+ E+GGWHDLVAKGFIEYIDTEEEETTMISMTI+DLV AR +P EAY++TYT
Sbjct: 121 IQTLQQRETAEEGGWHDLVAKGFIEYIDTEEEETTMISMTISDLVSARTNPGEAYSETYT 180

Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
Sbjct: 181 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 412 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
           QKPLVTTRAMEHLHFRQLPAGINAIV+IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 241 QKPLVTTRAMEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 300

Query: 472 RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
           RDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+
Sbjct: 301 RDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIA 360

Query: 532 QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
           QDE+QGQA+RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361 QDESQGQATRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 592 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
           SRHGQKGT+GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH+GKE
Sbjct: 421 SRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKE 480

Query: 652 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
           GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD
Sbjct: 481 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 540

Query: 712 KIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           KIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 541 KIHSRGRGPVQILTRQPAEGRSRDGGLRF 569


>gi|229662009|gb|ACQ84444.1| DNA-dependent RNA polymerase II beta subunit [Epichloe festucae]
          Length = 1261

 Score = 1127 bits (2914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/867 (62%), Positives = 655/867 (75%), Gaps = 42/867 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 388  LPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 447

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   IK  T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 448  VRRMNNELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVS 507

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 508  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 567

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS + P++EF+   G E  EE  P   P ATKIFVNG WVG+H+DP+ LV  +
Sbjct: 568  LMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGVHQDPKHLVSQV 627

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV----------EKQRLLIKKR 290
               RR+  +  EV +VR+IR +E +I++D GR  RP+F V          EK  L++ K 
Sbjct: 628  LDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETGIEKGHLVLSKE 687

Query: 291  DI--IALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             +  +A +Q E  ED     GW  L+  G +EY+D EEEET+MI MT  DL   RL    
Sbjct: 688  LVNKLAKEQAEPSEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAG 747

Query: 345  AYAD--------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
               D                     YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 748  VALDDDIGDDLNRRLKTRTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 807

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 808  MGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSG 867

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   +T+ M+HG+YDK
Sbjct: 868  YNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDK 927

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT---RRDHSISLRHSETGMVDQ 561
            LD+DG+  PG RVSGED+IIGKT PI Q E Q   +R T   RRD S  LR +E G++D 
Sbjct: 928  LDEDGIVAPGVRVSGEDIIIGKTAPIDQ-ENQDLGTRTTVHQRRDISTPLRSTENGIIDS 986

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V+LT NAD +++VKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPDII
Sbjct: 987  VILTVNADNVKYVKVRVRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDII 1046

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L K GYQ RGFE 
Sbjct: 1047 INPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEI 1106

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1107 MYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1166

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K SFECR CKNKT I
Sbjct: 1167 EMERDCMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKI 1226

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1227 AQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|358386392|gb|EHK23988.1| hypothetical protein TRIVIDRAFT_76818 [Trichoderma virens Gv29-8]
          Length = 1261

 Score = 1127 bits (2914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/867 (62%), Positives = 656/867 (75%), Gaps = 42/867 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 388  LPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 447

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   IK  T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 448  MRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVS 507

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 508  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 567

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS + P++EF+   G E  EE  P   P ATKIFVNG WVG+H+DP+ LV  +
Sbjct: 568  LMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGVHQDPKHLVNQV 627

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKKR 290
               RR+  +  EV +VR+IR +E +I++D GR  RP+F V+++           L++ K 
Sbjct: 628  LDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETGINKGHLVLTKE 687

Query: 291  DI--IALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             +  +A +Q E PED     GW  L+  G +EY+D EEEET+MI MT  DL   RL    
Sbjct: 688  LVNRLAKEQAEPPEDPSMKIGWEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAG 747

Query: 345  AYAD--------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
               D                     YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 748  ISTDEDMGDDPNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 807

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 808  MGKQAMGFFLTNYSRRMDTMANILYYPQKPLGTTRSMEFLKFRELPAGQNAIVAIACYSG 867

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   NT+ M+HG+YDK
Sbjct: 868  YNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQNTLRMKHGTYDK 927

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT---RRDHSISLRHSETGMVDQ 561
            LD+DG+  PG RVSGED+IIGKT PI   E Q   +R T   RRD S  LR +E G+VD 
Sbjct: 928  LDEDGIVAPGVRVSGEDIIIGKTAPIDA-ETQDLGTRTTMHQRRDISTPLRSTENGIVDS 986

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V++T NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPDII
Sbjct: 987  VIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDII 1046

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L K GYQ RGFE 
Sbjct: 1047 INPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEI 1106

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1107 MYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1166

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I
Sbjct: 1167 EMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKI 1226

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1227 AQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|343425328|emb|CBQ68864.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Sporisorium
            reilianum SRZ2]
          Length = 1242

 Score = 1126 bits (2912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/852 (62%), Positives = 664/852 (77%), Gaps = 28/852 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+ T +   TKKAY+FGY+IHRLLL AL RR  DDRDH+G KR+DL GPL+  LFRM
Sbjct: 391  MLPHISTSEGSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRM 450

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRK+TRDV  ++QKCV+  ++ ++Q A+K+ TIT+GL+YSLATGNWG Q  A   +AGV
Sbjct: 451  LFRKVTRDVYRHLQKCVEEHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGV 510

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR  +ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 511  SQVLNRFAFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 570

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  +TVG+ + PI+EFLEE+G ++  ++  A   +ATKIFVNG W+G H DP  LV T
Sbjct: 571  SLMATVTVGTPSAPIVEFLEEFGLDSLVDMQLAH-AKATKIFVNGVWMGTHDDPGQLVDT 629

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ--RLLIKKRDIIALQQ 297
            LR LRR+ D++ EV VVRDIR +ELRIYTD  R  RP+FIV      LLIKKR +  + Q
Sbjct: 630  LRDLRRKDDISHEVSVVRDIRERELRIYTDASRVLRPVFIVNPNDMSLLIKKRHVNMIGQ 689

Query: 298  R--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-------------- 341
               ++ E+ GW  LV +G IEY+D EEEE+ +I M+  DL Q+R +              
Sbjct: 690  PVPQTGEEFGWTHLVQEGVIEYLDAEEEESALICMSPTDLEQSREYQARNGQISLNSADP 749

Query: 342  ------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
                  P      T+THCEIHP+++LG+CASIIPFPDHNQSPRN Y SAMGKQA+ + ++
Sbjct: 750  SARLKSPHYIAPSTWTHCEIHPAMVLGICASIIPFPDHNQSPRNVYFSAMGKQAVSVNIS 809

Query: 396  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
            N+  R D++ +VL YPQKPL TTR+MEHL FR+LPAG N IVAI CYSGYNQEDSVIMNQ
Sbjct: 810  NFLSRADSMNHVLCYPQKPLGTTRSMEHLKFRELPAGTNCIVAIMCYSGYNQEDSVIMNQ 869

Query: 456  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
            SSIDRG FRS+++R Y  EEKK+G +  E+F +P+R  T+ M+HG+YDK+D DG   PGT
Sbjct: 870  SSIDRGLFRSMYYRGYVAEEKKVGVMQLEEFEKPNRDTTIRMKHGTYDKIDADGFCAPGT 929

Query: 516  RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
            RVSG+DVIIGKT P+  D E  G  S+ +T++D SISL+ +E G++DQVLLTTN+ G +F
Sbjct: 930  RVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKF 989

Query: 574  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
            VKVRVR+ R+PQ GDKF+SRHGQKGT+G+TY QEDMP++ EG+TPDII+NPHAIPSRMTI
Sbjct: 990  VKVRVRNTRVPQTGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTI 1049

Query: 634  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
            G L+EC++ KVAA  G+EGDATPFT++TV+ +S  L   GYQ RG E MY+GHTGR+L A
Sbjct: 1050 GHLVECLLSKVAALSGQEGDATPFTELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKLQA 1109

Query: 694  MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 753
             ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSR GGLRFGEMERDCMIAHG 
Sbjct: 1110 QVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIAHGI 1169

Query: 754  SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 813
            + FLKER+FD SD YR+HVC+ CGL A+ANLKK ++ECR C+N+T I Q+HIPYA KLL 
Sbjct: 1170 AGFLKERMFDVSDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAKLLM 1229

Query: 814  QELMAMAIAPRM 825
            QELM++ +A R+
Sbjct: 1230 QELMSVNVALRL 1241


>gi|413915214|gb|AFW21469.1| RNA polymerase II beta subunit [Balansia obtecta]
          Length = 1261

 Score = 1126 bits (2912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/866 (62%), Positives = 654/866 (75%), Gaps = 40/866 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 388  LPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 447

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   IK  T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 448  VRRMNNELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVS 507

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 508  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 567

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS + P++EF+   G E  EE  P   P ATKIFVNG WVG+H+DP+ LV  +
Sbjct: 568  LMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGVHQDPKHLVSQV 627

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV----------EKQRLLIKKR 290
               RR+  +  EV +VR+IR +E +I++D GR  RP+F V          EK  L++ K 
Sbjct: 628  LDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETGIEKGHLVLSKD 687

Query: 291  DI--IALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE- 343
             +  +A +Q E P+D     GW  L+  G +EY+D EEEET+MI MT  DL   RL    
Sbjct: 688  LVNKLAKEQAEPPDDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAG 747

Query: 344  -------------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
                                     YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 748  VALDDDNGDDLNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 807

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 808  MGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSG 867

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   +T+ M+HG+YDK
Sbjct: 868  YNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDK 927

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--GQASRYTRRDHSISLRHSETGMVDQV 562
            LD+DG+  PG RVSGED+IIGKT PI Q+      + S + RRD S  LR +E G++D V
Sbjct: 928  LDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLGTRTSVHQRRDISTPLRSTENGIIDSV 987

Query: 563  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 622
            +LT NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPDII+
Sbjct: 988  ILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIII 1047

Query: 623  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 682
            NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ L K GYQ RGFE M
Sbjct: 1048 NPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEIM 1107

Query: 683  YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 742
            YNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGE
Sbjct: 1108 YNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGE 1167

Query: 743  MERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIV 801
            MERDCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K SFECR CKNKT I 
Sbjct: 1168 MERDCMIAHGAAAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIA 1227

Query: 802  QVHIPYACKLLFQELMAMAIAPRMLT 827
            Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1228 QIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|46277281|gb|AAS86831.1| RNA polymerase II second largest subunit, partial [Arceuthobium
           campylopodum]
          Length = 584

 Score = 1125 bits (2911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/584 (91%), Positives = 568/584 (97%)

Query: 122 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 181
           VLNRLTYASTLSHLRRLNSPIGREGKL KPRQLHNSQWGMM PAETPEGQACGLVKNLAL
Sbjct: 1   VLNRLTYASTLSHLRRLNSPIGREGKLPKPRQLHNSQWGMMXPAETPEGQACGLVKNLAL 60

Query: 182 MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 241
           MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ+TKIFVNGCWVGIHRDP+MLVKTLR
Sbjct: 61  MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGCWVGIHRDPDMLVKTLR 120

Query: 242 RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP 301
           RLRRRVDVNTEVGVVRDI LKELR+YTDYGRCSRPLFIV++QRLLIKK+DI ALQQR++ 
Sbjct: 121 RLRRRVDVNTEVGVVRDICLKELRLYTDYGRCSRPLFIVDEQRLLIKKKDIQALQQRDAS 180

Query: 302 EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 361
           E+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV  RL+ ++AY+ TYTHCEIHPSLIL
Sbjct: 181 EEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVNGRLNLDDAYSKTYTHCEIHPSLIL 240

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM
Sbjct: 241 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 300

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL
Sbjct: 301 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 360

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR 541
           +KEDFGRP+R++TMGMRHGSYDKLDDDGLAPPGT+V+GE+VIIGKT+PI+ DE+Q Q+ R
Sbjct: 361 IKEDFGRPNRTDTMGMRHGSYDKLDDDGLAPPGTKVTGENVIIGKTSPIAPDESQEQSFR 420

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           YT+RDHS SLRHSE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT+G
Sbjct: 421 YTKRDHSTSLRHSENGVVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTIG 480

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI QLIECIMGKVAAHMGKEGDATPFTDVT
Sbjct: 481 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIAQLIECIMGKVAAHMGKEGDATPFTDVT 540

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           VDNIS+ALHKCGYQM GFETMYNGHTGR+LT+MIF+GPTYYQRL
Sbjct: 541 VDNISQALHKCGYQMHGFETMYNGHTGRKLTSMIFIGPTYYQRL 584


>gi|95115789|gb|ABF56189.1| RNA polymerase II second largest subunit [Phaeosphaeria sp. S-93-48]
          Length = 1262

 Score = 1125 bits (2911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/874 (61%), Positives = 663/874 (75%), Gaps = 47/874 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV  
Sbjct: 560  SLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R+I 
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDREIS 679

Query: 293  --IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              +  +Q +     GW D            L+  G IEY+D EEEET MI+ +  DL + 
Sbjct: 680  NRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  RGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PR TYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRKTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + GY
Sbjct: 1040 GLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +ECR 
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRP 1219

Query: 794  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1220 CHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|156065749|ref|XP_001598796.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980]
 gi|154691744|gb|EDN91482.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1267

 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/878 (61%), Positives = 669/878 (76%), Gaps = 50/878 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 383  LLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRN 442

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR+LT DV  Y+Q+CV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q  AA + AGV
Sbjct: 443  LFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGV 502

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 503  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 562

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LVK 
Sbjct: 563  ALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGVHRDPAHLVKC 622

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            ++ LRR   ++ EV ++R+IR +E +I+TD GR  RPL +++       K  L++ K  I
Sbjct: 623  VQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSPNKGNLVLNKDHI 682

Query: 293  IALQQRESPEDG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
              L+  +S                G+  L+  G +EY+D EEEET MI+MT  DL  +R 
Sbjct: 683  RRLEDDQSLPSNMDKDEKVHHGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQ 742

Query: 340  ------LHPEEA-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQ----- 375
                  + P+++              A  +THCEIHPS+ILG+CASIIPFPDHNQ     
Sbjct: 743  LQAGYQIRPDDSGDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQANSVA 802

Query: 376  --SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 433
              SPRN YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG 
Sbjct: 803  TKSPRNCYQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQ 862

Query: 434  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 493
            NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+
Sbjct: 863  NAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSD 922

Query: 494  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISL 551
            T+ ++ G+Y+KLDDDG+  PG RV+G D+IIGKT PI+ D E  GQ ++ + +RD S  L
Sbjct: 923  TLKLKQGTYEKLDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPL 982

Query: 552  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 611
            R +E+G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY Q+DMP+
Sbjct: 983  RSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPF 1042

Query: 612  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 671
            T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L  
Sbjct: 1043 TREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGLEGDATPFTEVTVDSVSKLLRA 1102

Query: 672  CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 731
             GY  RGFE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EG
Sbjct: 1103 HGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEG 1162

Query: 732  RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFE 790
            R+RDGGLRFGEMERDCMI+HGAS FLKERLF+ SDA+RVH+C+ CGL+  IA +   SFE
Sbjct: 1163 RARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHICDICGLMTPIAKINTGSFE 1222

Query: 791  CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            CR CKNKT I Q+HIPYA KLLFQEL AM IA RM TK
Sbjct: 1223 CRPCKNKTKISQIHIPYAAKLLFQELAAMNIATRMFTK 1260


>gi|6606105|gb|AAF19065.1|AF107793_1 DNA-dependent RNA polymerase II RPB140, partial [Emericella nidulans]
          Length = 1009

 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/852 (63%), Positives = 658/852 (77%), Gaps = 40/852 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 158  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 217

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD++ YVQ+CV++ +++ L   +KA T+T GL+Y+LATGNWG Q  AA  +AGV
Sbjct: 218  LFTRVTRDLQRYVQRCVESDREIYLNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGV 277

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 278  SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 337

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HR P  LV+T
Sbjct: 338  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVET 397

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 398  MQALRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHI 457

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L++ +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 458  RKLEEDKELPPDMDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQL 517

Query: 341  H-----PEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                  PEE              A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 518  QAGYALPEEQDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 577

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYS
Sbjct: 578  AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYS 637

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+YD
Sbjct: 638  GYNQEDSVIMNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYD 697

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 561
            KLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S  LR +E G+VDQ
Sbjct: 698  KLDEDGIVNPGVRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQ 757

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            VL+TT  D LR VKVR+R  ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I
Sbjct: 758  VLVTTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLI 817

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD+IS+ L + GYQ RGFE 
Sbjct: 818  INPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEV 877

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFG
Sbjct: 878  MYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFG 937

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK  I
Sbjct: 938  EMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRI 997

Query: 801  VQVHIPYACKLL 812
             QVHIPYA KLL
Sbjct: 998  SQVHIPYAAKLL 1009


>gi|443898353|dbj|GAC75688.1| RNA polymerase II, second largest subunit [Pseudozyma antarctica
            T-34]
          Length = 1240

 Score = 1124 bits (2907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/852 (63%), Positives = 663/852 (77%), Gaps = 28/852 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHV T +   TKKAY+FGY+IHRLLL AL RR  DDRDH+G KR+DL GPL+  LFRM
Sbjct: 389  MLPHVSTSEGSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRM 448

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRK+TRDV  ++QKCV+  ++ ++Q A+K+ TIT+GL+YSLATGNWG Q  A   +AGV
Sbjct: 449  LFRKVTRDVYRHLQKCVEEHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGV 508

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR  +ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 509  SQVLNRFAFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 568

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  +TVG+ + PI+EFLEE+G ++  ++  A   +ATK+FVNG W+G H DP  LV T
Sbjct: 569  SLMATVTVGTPSAPIVEFLEEFGLDSLVDMQVAH-AKATKVFVNGVWMGTHDDPGQLVDT 627

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ--RLLIKKRDIIALQQ 297
            LR LRR+ D++ EV VVRDIR +ELRIYTD  R  RP+FIV      LLIKK  +  + Q
Sbjct: 628  LRDLRRKDDISHEVSVVRDIRERELRIYTDASRVLRPVFIVNPHDMTLLIKKHHVEMIGQ 687

Query: 298  R--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-------------------V 336
                + E+  W  LV +G IEY+D EEEE+ +I MT  DL                    
Sbjct: 688  PVPATGEEFRWTQLVQEGVIEYLDAEEEESVLICMTTTDLELSREYKQRNGNINLTSADP 747

Query: 337  QARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
             ARL      A DT+THCEIHP++ LG+CASI+PFPDHNQSPRN YQSAMGKQA+G+ ++
Sbjct: 748  TARLKAVHTIAPDTWTHCEIHPAMTLGICASIVPFPDHNQSPRNVYQSAMGKQAIGVPIS 807

Query: 396  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
            N   R D++A+VLYYPQKPL TTR+MEH+ FR+LPAG N+IVAI CYSGYNQEDSVIMNQ
Sbjct: 808  NILSRADSMAHVLYYPQKPLGTTRSMEHIRFRELPAGQNSIVAIMCYSGYNQEDSVIMNQ 867

Query: 456  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
            SSIDRGF RSL++R Y  EEKK+G +  E+F +P R  T+ M+HG+YDK+D DGL  PGT
Sbjct: 868  SSIDRGFMRSLYYRGYMAEEKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLVAPGT 927

Query: 516  RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
            RVSG+DVIIGKT P+  D E  G  S+ +T++D SISL+ +E G++DQVLLTTN++G +F
Sbjct: 928  RVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSNGNKF 987

Query: 574  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
            VKVRVR+ R+PQ GDKF+SRHGQKGTVG+ Y QEDMP++ EGITPDII+NPHAIPSRMTI
Sbjct: 988  VKVRVRNSRVPQTGDKFASRHGQKGTVGIMYRQEDMPFSAEGITPDIIINPHAIPSRMTI 1047

Query: 634  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
            G L+EC++ KVAA  G+EGDATPFT++TV+ +S  L   GYQ RG E MY+GHTGR++ A
Sbjct: 1048 GHLVECLLSKVAALSGQEGDATPFTELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKMQA 1107

Query: 694  MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 753
             ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSR GGLRFGEMERDCMIAHG 
Sbjct: 1108 QVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIAHGI 1167

Query: 754  SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 813
            + FLKER+FD SD YR+HVC+ CGL A+ANLKK ++ECR C+N+T I Q+HIPYA KLL 
Sbjct: 1168 AGFLKERMFDVSDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAKLLM 1227

Query: 814  QELMAMAIAPRM 825
            QEL ++ +A R+
Sbjct: 1228 QELQSVNVALRL 1239


>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris CM01]
          Length = 1261

 Score = 1124 bits (2907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/868 (62%), Positives = 655/868 (75%), Gaps = 43/868 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+      ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 387  LPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 446

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   IK  T+++GLKYSLATGNWG Q  AA + AGVS
Sbjct: 447  MRRMHSELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAANSTAGVS 506

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 507  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 566

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS A P+++F+   G E  EE  P   P ATKIFVNG WVG+H+DP+ LV  +
Sbjct: 567  LMCYVSVGSPAEPLIDFMINRGMEVIEEYEPLRYPHATKIFVNGTWVGVHQDPKHLVDQV 626

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV----------EKQRLLIKKR 290
               RR+  +  EV ++RDIR +E +I++D GR  RP+F V          EK +L + K 
Sbjct: 627  FDTRRKSYLQYEVSLIRDIRDQEFKIFSDAGRVMRPVFTVQQKNDPETGLEKGQLGLTKD 686

Query: 291  DI--IALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             +  +A +Q + P+D     GW  L+  G IEY+D EEEET+MI MT  DL   RL    
Sbjct: 687  LVNKLAQEQADPPDDSELKMGWEGLIKAGAIEYLDAEEEETSMICMTPEDLELYRLQKAG 746

Query: 345  AYAD---------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
               D                      YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQS
Sbjct: 747  LSVDDDHEGGDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 806

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYS
Sbjct: 807  AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYS 866

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   +T+ M+HG+YD
Sbjct: 867  GYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYD 926

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT---RRDHSISLRHSETGMVD 560
            KLD+DG+  PG RVSGED+IIGKT PI   E Q   +R T   RRD S  LR +E G+VD
Sbjct: 927  KLDEDGIVAPGVRVSGEDIIIGKTAPIDP-ETQDLGTRTTAHQRRDISTPLRSTENGIVD 985

Query: 561  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
            QV++T NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPDI
Sbjct: 986  QVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDI 1045

Query: 621  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
            I+NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S  L K GYQ RGFE
Sbjct: 1046 IINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSDLLRKHGYQSRGFE 1105

Query: 681  TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
             MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRF
Sbjct: 1106 IMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 1165

Query: 741  GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTD 799
            GEMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT 
Sbjct: 1166 GEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTK 1225

Query: 800  IVQVHIPYACKLLFQELMAMAIAPRMLT 827
            I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1226 IAQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|46277267|gb|AAS86824.1| RNA polymerase II second largest subunit, partial [Eschscholzia
           californica]
          Length = 559

 Score = 1122 bits (2902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/559 (94%), Positives = 550/559 (98%)

Query: 147 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 206
           KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENF
Sbjct: 1   KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENF 60

Query: 207 EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 266
           EEISPAVIPQ+TKIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDI LKELR+
Sbjct: 61  EEISPAVIPQSTKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIHLKELRL 120

Query: 267 YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 326
           YTDYGRCSRPLFIVEKQRLLIKK+DI ALQ RESPE+GGWHDLVAKGFIEY+DTEEEETT
Sbjct: 121 YTDYGRCSRPLFIVEKQRLLIKKKDIQALQLRESPEEGGWHDLVAKGFIEYVDTEEEETT 180

Query: 327 MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
           MISMTINDLV AR++P+EAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 181 MISMTINDLVSARVNPKEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 240

Query: 387 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
           KQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN
Sbjct: 241 KQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 300

Query: 447 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
           QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL+KEDFGRP+R NTMGMRHGSYDKLD
Sbjct: 301 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLD 360

Query: 507 DDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 566
           DDGLAPPGTRVSGEDVIIGKTTPI+QD++QGQASRYTRRDHS SLRHSE+GMVDQVLLTT
Sbjct: 361 DDGLAPPGTRVSGEDVIIGKTTPIAQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTT 420

Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           NADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA
Sbjct: 421 NADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 480

Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
           IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH
Sbjct: 481 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 540

Query: 687 TGRRLTAMIFLGPTYYQRL 705
           TGR+LTAMIFLGPTYYQRL
Sbjct: 541 TGRKLTAMIFLGPTYYQRL 559


>gi|56694368|gb|AAW22924.1| RNA polymerase II second largest subunit [Drimys winteri]
          Length = 565

 Score = 1122 bits (2901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/566 (93%), Positives = 554/566 (97%), Gaps = 1/566 (0%)

Query: 167 TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 226
           TPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCW
Sbjct: 1   TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCW 60

Query: 227 VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 286
           VGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLL
Sbjct: 61  VGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLL 120

Query: 287 IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 346
           I+K+DI ALQQRE+ E+G WHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+   AY
Sbjct: 121 IRKKDIRALQQRETQEEG-WHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNRGVAY 179

Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
           ++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY
Sbjct: 180 SETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 239

Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
           VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL
Sbjct: 240 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 299

Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
           FFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK
Sbjct: 300 FFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 359

Query: 527 TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
           TTPI+QDE+QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR+PQI
Sbjct: 360 TTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQI 419

Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
           GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA
Sbjct: 420 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 479

Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLK
Sbjct: 480 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLK 539

Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGR 732
           HMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 540 HMVDDKIHSRGRGPVQILTRQPAEGR 565


>gi|449302981|gb|EMC98989.1| hypothetical protein BAUCODRAFT_65631 [Baudoinia compniacensis UAMH
            10762]
          Length = 1254

 Score = 1121 bits (2900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/873 (60%), Positives = 663/873 (75%), Gaps = 46/873 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY+++RLL   LGR  EDDRDH+G KRLDLAGPL+  +FR+
Sbjct: 374  FLPHISQEEGSETRKAFFLGYMVNRLLQVQLGRVEEDDRDHFGKKRLDLAGPLMAQVFRL 433

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
             F +L +D+R Y+ +CV+ G++ N+  A+K+  ITSGL+YSLATGNWG Q  AA ++AGV
Sbjct: 434  KFSQLVKDIRNYLHRCVEQGREFNINLAVKSNIITSGLRYSLATGNWGDQKKAASSKAGV 493

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 494  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 553

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM Y++VG+   P++E++   G E  EE    + P ATK+F+NG WVG+H     L + 
Sbjct: 554  ALMCYVSVGTPGTPLIEYMRHRGMELLEEYDAVMNPNATKVFLNGTWVGVHSSGHQLTEA 613

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            L+ LRR+  +  EV ++RD+R +E++++TD GR  RPLF+++          L++ +  +
Sbjct: 614  LKELRRKEVIGFEVTIIRDVREREIKVFTDAGRVMRPLFVIDNNPNSPNRGNLVLSREQV 673

Query: 293  IAL----------------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
              L                +Q+++    GWH LV  G IEY+D EEEET MI MT +DL 
Sbjct: 674  EKLSNDQKIIGSLEGQSVSEQQKAELTFGWHGLVKNGVIEYLDAEEEETAMIMMTPDDLE 733

Query: 337  Q---ARLHPE--EAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSP 377
            +   ARL  +  EA  D               +THCEIHP++ILG+CASIIPFPDHNQSP
Sbjct: 734  EHKLARLGEDWVEAKEDPHRRIKAKPNKQVRMWTHCEIHPAMILGICASIIPFPDHNQSP 793

Query: 378  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
            RNTYQSAMGKQAMG+ +TN+  RMDT+A VLYYPQKPL TTR+ME L FR LPAG NAIV
Sbjct: 794  RNTYQSAMGKQAMGVTLTNFGIRMDTMANVLYYPQKPLATTRSMEFLKFRDLPAGQNAIV 853

Query: 438  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
            AIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+T+ M
Sbjct: 854  AIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVEQFEKPVRSDTLKM 913

Query: 498  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
            + G+YDKLDDDG+  PG+RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR +E
Sbjct: 914  KGGTYDKLDDDGIISPGSRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTE 973

Query: 556  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
             G+VDQVLLTTN +GL+FVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T +G
Sbjct: 974  NGIVDQVLLTTNTEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTADG 1033

Query: 616  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
            +TPDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVT+ +IS  L + G+Q
Sbjct: 1034 LTPDIIINPHAIPSRMTIAHLIECLLSKVGALTGQEGDATPFTDVTLTSISTLLEEHGFQ 1093

Query: 676  MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 735
             RGFE MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RD
Sbjct: 1094 RRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARD 1153

Query: 736  GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGC 794
            GGLRFGEMERDCMIAHGAS FLKERL D SDA+RVH+CE CGL+  IA LK+ + ECR C
Sbjct: 1154 GGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICEICGLMTPIAKLKEKTIECRQC 1213

Query: 795  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            +NK  I QV IPYA KLLFQEL AM +A RM T
Sbjct: 1214 RNKNRIAQVIIPYAAKLLFQELAAMNVATRMFT 1246


>gi|242824711|ref|XP_002488312.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
            10500]
 gi|218713233|gb|EED12658.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
            10500]
          Length = 1256

 Score = 1120 bits (2898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/869 (62%), Positives = 662/869 (76%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 380  FLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRT 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD+  YVQ+CV+  ++V L   +K  T+T GLKY+LATGNWG Q  A  ++AGV
Sbjct: 440  LFTRVTRDLTRYVQRCVETNREVVLNVGLKPATLTGGLKYALATGNWGEQKKAMSSKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVGS + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 560  ALMCSITVGSPSEPIVDFMIQRNMEVLEEFEPLVTPHATKVFVNGVWVGIHRDPAHLVST 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 620  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPRSENCGSLVLNKDHI 679

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+  RE P D           GW  LV  G IEY+D EEEET MI+M+  DL +  +L
Sbjct: 680  RRLEADRELPPDLDPEERREQYYGWEGLVKSGVIEYVDAEEEETIMIAMSPEDLEISKQL 739

Query: 341  H-----PEE-------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                  PE+               A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 740  QAGYAMPEDNSDPNKRVRSVLSQRAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 799

Query: 383  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
            SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 800  SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACY 859

Query: 443  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
            SGYNQEDSVIMNQSSIDRG FRSLF+R+Y + E+K+G    E F +P RS+T+GMR G+Y
Sbjct: 860  SGYNQEDSVIMNQSSIDRGLFRSLFYRTYTEAERKLGLQTIEKFEKPMRSDTLGMRKGTY 919

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMVD 560
            DK++DDGL  PG RV+GED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+VD
Sbjct: 920  DKIEDDGLVAPGVRVTGEDIIIGKTAPLAPESEELGQRTKAHTKVDVSTPLRATESGIVD 979

Query: 561  QVLLTTNAD-GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            QVLLTT  D  LR VKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD
Sbjct: 980  QVLLTTGNDPDLRLVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVVPD 1039

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S+ L + GYQ RGF
Sbjct: 1040 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRGF 1099

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1100 EVMYNGHTGKKLKAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1159

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK 
Sbjct: 1160 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKH 1219

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1220 RISQVHIPYAAKLLFQELAAMNIAARMFT 1248


>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 942

 Score = 1120 bits (2898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/798 (67%), Positives = 641/798 (80%), Gaps = 25/798 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 145 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 204

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 205 LFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 264

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 265 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 324

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 325 ALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 383

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
           +++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L ++K+ +  L    
Sbjct: 384 IKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHVKWLSNGL 443

Query: 298 RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA----- 345
            +  ++  W  LV  G IE +D EEEET MISMT  DL  +RL       H  +      
Sbjct: 444 NDDGDEYKWEHLVKGGIIELLDAEEEETVMISMTPEDLENSRLQQSGVDLHANDGEFDPA 503

Query: 346 -------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+ 
Sbjct: 504 ARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 563

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 564 IRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 623

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDK++DDGL  PGT V+
Sbjct: 624 DRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIAPGTGVA 683

Query: 519 GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           GED+IIGKT PI  D E  GQ ++ +TRRD S  L+ +E+G+VDQVL+TTN++G +FVKV
Sbjct: 684 GEDIIIGKTAPIPPDSEELGQRTQTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKV 743

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG L
Sbjct: 744 RVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHL 803

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
           +EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A ++
Sbjct: 804 VECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 863

Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
           LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + F
Sbjct: 864 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGF 923

Query: 757 LKERLFDQSDAYRVHVCE 774
           LKERLF+ SDAYR+HVC+
Sbjct: 924 LKERLFEASDAYRLHVCD 941


>gi|212545975|ref|XP_002153141.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
            18224]
 gi|210064661|gb|EEA18756.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
            18224]
          Length = 1254

 Score = 1120 bits (2898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/869 (62%), Positives = 662/869 (76%), Gaps = 42/869 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 378  FLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRT 437

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++TRD+  YVQ+CV+  ++V L   +K  T+T GLKY+LATGNWG Q  A  ++AGV
Sbjct: 438  LFTRVTRDLTRYVQRCVETNREVVLNVGLKPATLTGGLKYALATGNWGEQKKAMSSKAGV 497

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 498  SQVLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 557

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVGS + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 558  ALMCSITVGSPSEPIVDFMIQRNMEVLEEFEPLVTPHATKVFVNGVWVGVHRDPAHLVST 617

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 618  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPRSENCGSLVLNKDHI 677

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
              L+  RE P D           GW  LV  G IEY+D EEEET MI+M+  DL +  +L
Sbjct: 678  RRLEADRELPPDLDPEERREQYYGWEGLVKSGVIEYVDAEEEETIMIAMSPEDLEISKQL 737

Query: 341  H-----PEE-------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                  PE+               A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 738  QAGYTLPEDNNDPNKRVRSVLSQRAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 797

Query: 383  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
            SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 798  SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACY 857

Query: 443  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
            SGYNQEDSVIMNQSSIDRG FRSLF+R+Y + E+K+G    E F +P RS+T+GMR G+Y
Sbjct: 858  SGYNQEDSVIMNQSSIDRGLFRSLFYRTYTEAERKLGLQTIEKFEKPMRSDTLGMRKGTY 917

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMVD 560
            DK++DDGL  PG RV+GED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+VD
Sbjct: 918  DKIEDDGLVAPGVRVTGEDIIIGKTAPLAPESEELGQRTKAHTKVDVSTPLRATESGIVD 977

Query: 561  QVLLTTNAD-GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            QVLLTT  D  LR VKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD
Sbjct: 978  QVLLTTGNDPDLRLVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPD 1037

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S+ L + GYQ RGF
Sbjct: 1038 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRGF 1097

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1098 EVMYNGHTGKKLKAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1157

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 798
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK 
Sbjct: 1158 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKH 1217

Query: 799  DIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             I QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1218 RISQVHIPYAAKLLFQELAAMNIAARMFT 1246


>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
            ARSEF 2860]
          Length = 1261

 Score = 1119 bits (2894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/867 (62%), Positives = 653/867 (75%), Gaps = 42/867 (4%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+      ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 388  LPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGI 447

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R++  ++  Y+++CV+  +  NL   +K  T+++GLKYSLATGNWG Q  A  + AGVS
Sbjct: 448  MRRMHSELANYLRRCVEGNRHFNLAVGVKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVS 507

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 508  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 567

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM Y++VGS A P+++F+   G E  EE  P   P ATKIFVNG WVG+H+DP+ L   +
Sbjct: 568  LMCYVSVGSPAEPLIDFMINRGMEVIEEYEPLRYPHATKIFVNGTWVGVHQDPKHLADQV 627

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV----------EKQRLLIKKR 290
               RR+  +  EV +VR+IR +E +I++D GR  RP+F V          EK +L + K 
Sbjct: 628  FDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQSKNDPETGLEKGQLGLTKD 687

Query: 291  DI--IALQQRESPED----GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             +  +A +Q + P+D     GW  L+  G +EY+D EEEET+MI MT  DL   RL    
Sbjct: 688  LVNRLAQEQADPPDDPEMKTGWEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAG 747

Query: 345  AYAD--------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
               D                     YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 748  VAVDDDHGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 807

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            MGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 808  MGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSG 867

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   +T+ M+HG+YDK
Sbjct: 868  YNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDK 927

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT---RRDHSISLRHSETGMVDQ 561
            LD+DG+  PG RVSGED+IIGKT PI   E Q   +R T   RRD S  LR +E G+VDQ
Sbjct: 928  LDEDGIVAPGVRVSGEDIIIGKTAPIDP-ETQDLGARTTAHQRRDISTPLRSTENGIVDQ 986

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V++T NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPDII
Sbjct: 987  VIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDII 1046

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S  L K GYQ RGFE 
Sbjct: 1047 INPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSDLLRKHGYQSRGFEI 1106

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1107 MYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1166

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I
Sbjct: 1167 EMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKI 1226

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1227 AQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
          Length = 1327

 Score = 1118 bits (2892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/850 (62%), Positives = 657/850 (77%), Gaps = 27/850 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHV T      KKAY+FGY+IHRLL+ A+ RR  DDRDH+G KRLDLAGPL+  LFR 
Sbjct: 434  VLPHVSTSAGSHQKKAYFFGYMIHRLLMAAMQRRDLDDRDHFGKKRLDLAGPLVASLFRT 493

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+K+ +DV  Y+QKCVD  K+  +  AI+A TIT+GLKYSLATGNWG Q  AA  RAGV
Sbjct: 494  LFKKMIKDVYRYLQKCVDTQKEFKMNNAIRASTITNGLKYSLATGNWGEQKKAAAARAGV 553

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 554  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 613

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+A  PI++FL++WG+ + EE++   + +  K+FVNG W G+H +P++L+K 
Sbjct: 614  ALMSYITVGTAIRPIIDFLQDWGSVSLEEVTD--LRKGAKVFVNGFWQGVHPNPDVLMKV 671

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L RLRR   +N  V +VRDIR +E+RI+ D GR  RPL IV+ Q+L ++ R  + L  R+
Sbjct: 672  LLRLRRTGTLNKSVSIVRDIREREIRIFADPGRVCRPLLIVQDQQLRLR-RCHLDLLMRD 730

Query: 300  SPED--GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA-----RLHPEE-------- 344
               D   G+ D+   G +E++D EEEE  MI MT  DL  A     + H ++        
Sbjct: 731  PASDYAAGFDDMTNWGIVEFLDAEEEEMAMICMTYEDLEAAYYAHDKDHAKQGVDPTARL 790

Query: 345  ------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                  + A  +THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ
Sbjct: 791  RSAITASQAQRWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQ 850

Query: 399  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
             R+DT+A +L+YPQKPL TTR+M++LHFRQLPAG NAIVAI CYSGYNQEDSVIMNQS+I
Sbjct: 851  VRLDTMANILFYPQKPLATTRSMDYLHFRQLPAGQNAIVAILCYSGYNQEDSVIMNQSAI 910

Query: 459  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
            DRG FRS ++R+Y D EK+ G L  E F +P R +T+ ++ G+YDKL DDG    G +V 
Sbjct: 911  DRGLFRSFYYRTYMDTEKRQGALQMESFEKPSRLDTLRLKRGTYDKLGDDGFVRVGEQVR 970

Query: 519  GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
            G D+IIGKT PI+ D E  GQ ++ + +RD S  L+ +E G +D+V++TTNADGL+F KV
Sbjct: 971  GGDIIIGKTAPIAPDSEELGQRTKDHVKRDVSTPLKSTEEGYIDRVMITTNADGLKFAKV 1030

Query: 577  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
            RVRS RIPQ GDKF+SRHGQKGT+G+TY Q DMP+T EGI PD+I+NPHAIPSRMTIG L
Sbjct: 1031 RVRSTRIPQTGDKFASRHGQKGTIGITYQQNDMPFTSEGIVPDLIINPHAIPSRMTIGHL 1090

Query: 637  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
            +EC++ KV+A  G+EGDATPF+DVTVD++S  L   G+Q RG E M NGHTGR+L A ++
Sbjct: 1091 VECLLSKVSALTGQEGDATPFSDVTVDSVSSVLKAQGFQDRGLEIMSNGHTGRKLAAQVY 1150

Query: 697  LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
            LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMIAHG + F
Sbjct: 1151 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGVAGF 1210

Query: 757  LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
            LKER+F+ SDA+R+HVC+ CG+ AIANL K +FECR CKNKT I QV +PY+ KLLF EL
Sbjct: 1211 LKERMFEASDAFRIHVCDICGMTAIANLMKQTFECRACKNKTAISQVLVPYSAKLLFSEL 1270

Query: 817  MAMAIAPRML 826
             AM IA R++
Sbjct: 1271 QAMNIATRIV 1280


>gi|40644549|emb|CAD89106.1| RNA polymerase II, second largest subunit [Tephrosia purpurea]
          Length = 550

 Score = 1117 bits (2889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/548 (96%), Positives = 543/548 (99%)

Query: 167 TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 226
           TPEGQACGLVKNLA MVYITVGSAA PILEFLEEWGTENFEEISPAVIPQATKIFVNGCW
Sbjct: 1   TPEGQACGLVKNLAXMVYITVGSAASPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 60

Query: 227 VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 286
           +GIHRDP+MLVKTLR LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLL
Sbjct: 61  LGIHRDPDMLVKTLRNLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLL 120

Query: 287 IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 346
           IKK+DIIALQQRESPE+GGWHDLV+KGFIEYIDTEEEETTMISMTINDL+QARL+P EAY
Sbjct: 121 IKKKDIIALQQRESPEEGGWHDLVSKGFIEYIDTEEEETTMISMTINDLIQARLNPGEAY 180

Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
           +DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY
Sbjct: 181 SDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 240

Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
           VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL
Sbjct: 241 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 300

Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
           FFRSYRDEEKKMGTLVKEDF RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK
Sbjct: 301 FFRSYRDEEKKMGTLVKEDFCRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 360

Query: 527 TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
           TTPISQ+EAQGQASRYTRRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQI
Sbjct: 361 TTPISQEEAQGQASRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQI 420

Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
           GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAA
Sbjct: 421 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAA 480

Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT+MIFLGPTYYQRLK
Sbjct: 481 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLK 540

Query: 707 HMVDDKIH 714
           HMVDDKIH
Sbjct: 541 HMVDDKIH 548


>gi|46277283|gb|AAS86832.1| RNA polymerase II second largest subunit, partial [Rhododendron
           macrophyllum]
          Length = 580

 Score = 1117 bits (2888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/580 (90%), Positives = 557/580 (96%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPLATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR+PE+LV+TLR+LRR+VDVNTEVGV+RDIRLKELR+YTD GRCSRPLFIVEKQ+L
Sbjct: 61  WVGIHRNPELLVRTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDCGRCSRPLFIVEKQKL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
            IKK+DI+ALQQRESPE+ GWHDLVAKG+IEY+DTEEEETTMISMTINDL  ARL P++A
Sbjct: 121 QIKKKDILALQQRESPEEVGWHDLVAKGYIEYVDTEEEETTMISMTINDLTSARLCPDDA 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 181 YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           +F+RSYRDEEKKMGTLVKEDFG P+R NTMGMRHGSYDKLDDDG APPGTRV+GEDVIIG
Sbjct: 301 IFYRSYRDEEKKMGTLVKEDFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVIIG 360

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTPI+ D+AQGQ +RYTRRDHS  LRHSE+GMVDQVLLTTNADGLRFVK+R+RS+RIPQ
Sbjct: 361 KTTPIAPDDAQGQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIRIPQ 420

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGT+GM YTQEDMPWT+EGI PDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421 IGDKFSSRHGQKGTIGMAYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR LT  IFLGPTYYQRL
Sbjct: 481 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTYTIFLGPTYYQRL 540

Query: 706 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 745
           KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER
Sbjct: 541 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 580


>gi|410610277|gb|AFV74907.1| RNA polymerase II second largest subunit, partial [Olax imbricata]
          Length = 568

 Score = 1116 bits (2886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/568 (95%), Positives = 562/568 (98%)

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALMVYITVGSAAYPILEFLE+WGTENFEEISPAVIPQATKIFVNGCWVGIHR
Sbjct: 1   ACGLVKNLALMVYITVGSAAYPILEFLEKWGTENFEEISPAVIPQATKIFVNGCWVGIHR 60

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           DP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+D
Sbjct: 61  DPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 120

Query: 292 IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
           I ALQQRES E+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV AR++PEEAY +TYT
Sbjct: 121 IQALQQRESAEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVTARINPEEAYTETYT 180

Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
Sbjct: 181 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 412 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
           QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 241 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 300

Query: 472 RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
           RDEEKKMGTLVKEDFGRP+R++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+P++
Sbjct: 301 RDEEKKMGTLVKEDFGRPNRTDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPMA 360

Query: 532 QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
           QDE+QGQ +RY+RRDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361 QDESQGQTARYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 592 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
           SRHGQKGT+GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 421 SRHGQKGTIGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 480

Query: 652 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
           GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD
Sbjct: 481 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 540

Query: 712 KIHSRGRGPVQILTRQPAEGRSRDGGLR 739
           KIHSRGRGPVQILTRQPAEGRSRDGGLR
Sbjct: 541 KIHSRGRGPVQILTRQPAEGRSRDGGLR 568


>gi|169616566|ref|XP_001801698.1| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
 gi|160703211|gb|EAT81164.2| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
          Length = 1252

 Score = 1115 bits (2885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/860 (61%), Positives = 655/860 (76%), Gaps = 47/860 (5%)

Query: 15   KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 74
            K  +FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+LF KLT+DV  Y+Q
Sbjct: 384  KPTFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRILFLKLTKDVFKYLQ 443

Query: 75   KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLS 133
            +CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGVSQVLNR TYASTLS
Sbjct: 444  RCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLS 503

Query: 134  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 193
            HLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL+LM Y++VGS A P
Sbjct: 504  HLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDATP 563

Query: 194  ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEV 253
            I++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV  ++ LRR   ++ E+
Sbjct: 564  IIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSVVQELRRNGTLSYEM 623

Query: 254  GVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI---IALQQRESPEDG 304
             ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R+I   +  +Q +S    
Sbjct: 624  SLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLVFDREISNRLVKEQLDSDTRA 683

Query: 305  GWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ--------------- 337
            GW D            L+  G IEY+D EEEET MI+ +  DL +               
Sbjct: 684  GWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDEWRGMKMGLPTSERAN 743

Query: 338  ------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
                   R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 744  LGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 803

Query: 391  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 450
            G+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 804  GVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDS 863

Query: 451  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 510
            VIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ ++ G+YDKLDDDG+
Sbjct: 864  VIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGV 923

Query: 511  APPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 568
              PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +E G+VDQVL TTN 
Sbjct: 924  VAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNT 983

Query: 569  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
            +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+++NPHAIP
Sbjct: 984  EGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIP 1043

Query: 629  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 688
            SRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + GYQ RGFE MYNGHTG
Sbjct: 1044 SRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQAGYQKRGFEIMYNGHTG 1103

Query: 689  RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 748
            +++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGGLRFGEMERDCM
Sbjct: 1104 KKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCM 1163

Query: 749  IAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPY 807
            IAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +ECR C NKT I Q+HIPY
Sbjct: 1164 IAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHIPY 1223

Query: 808  ACKLLFQELMAMAIAPRMLT 827
            A KLLFQEL+AM IA RM T
Sbjct: 1224 AAKLLFQELLAMNIATRMFT 1243


>gi|398404063|ref|XP_003853498.1| DNA-directed RNA polymerase II subunit RPB2 [Zymoseptoria tritici
            IPO323]
 gi|339473380|gb|EGP88474.1| hypothetical protein MYCGRDRAFT_99853 [Zymoseptoria tritici IPO323]
          Length = 1231

 Score = 1115 bits (2885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/871 (61%), Positives = 658/871 (75%), Gaps = 49/871 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ETKKA++ GY+++R+L CALGR  EDDRDH+G KRLDLAGPL+  +FR+
Sbjct: 358  FLPHISQEEGSETKKAFFLGYMVNRMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRL 417

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
             F++L +D+R Y+ +CV+ GKD N+  A+K   ITSGL+Y LATGNWG Q  AA  +AGV
Sbjct: 418  KFQQLVKDMRQYLHRCVETGKDFNIALAVKTNIITSGLRYCLATGNWGDQKKAASAKAGV 477

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 478  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 537

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y+TVG+   PI++F+ + G +  EE  P  +  ATK+F+NG WVG+H+    L +T
Sbjct: 538  SLMCYVTVGTPGEPIVDFMRQRGMDLLEEHDPNQVKDATKVFLNGTWVGVHKSAGQLTET 597

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-------EKQRLLIKKRDI 292
            LR+LRR+  ++ EV ++RD+R +E+R++TD GR  RPLF+V       E   L++K+  +
Sbjct: 598  LRQLRRKGLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNNPKSLEPGTLMLKQDHV 657

Query: 293  IALQQRE---------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
              L Q +         S ED      GW  LV  G +EY+D EEEE  MI MT  DL + 
Sbjct: 658  ERLHQDQELLASLEGVSEEDREQQLFGWKGLVTSGVVEYLDAEEEEVAMIIMTPEDLEEH 717

Query: 339  R-----LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
            R     +  EE   D              TYTHCEIHP++ILG+CASIIPFPDHNQSPRN
Sbjct: 718  RVMRNGMAVEELKVDPHRRIKPKPNPQVRTYTHCEIHPAMILGICASIIPFPDHNQSPRN 777

Query: 380  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
            TYQ+ MG     + +TNY  RMDT+A VLYYPQKPL TTR+ME L FR LPAG NAIVAI
Sbjct: 778  TYQATMG-----VTLTNYNVRMDTMANVLYYPQKPLATTRSMEFLKFRDLPAGQNAIVAI 832

Query: 440  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            ACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+TM M+H
Sbjct: 833  ACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVESFEKPTRSDTMRMQH 892

Query: 500  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
            G+YDKLD+DG+  PG RVSG D++IGKT P+  D E  GQ ++ + +RD S  LR +E G
Sbjct: 893  GTYDKLDEDGIISPGARVSGTDILIGKTAPMPPDAEELGQRTKLHVKRDVSTPLRSTENG 952

Query: 558  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            +VDQVLLTTN +GLRFVKVR R  ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ +G+T
Sbjct: 953  VVDQVLLTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSADGLT 1012

Query: 618  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
            PDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFT+VTV +IS+ L   G+Q R
Sbjct: 1013 PDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPFTEVTVTSISEILKSNGFQQR 1072

Query: 678  GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
            GFE MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGG
Sbjct: 1073 GFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGG 1132

Query: 738  LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 796
            LRFGEMERDCMIAHGAS FLKERL D SDA+RVH+CE CGL+  IA++KK  FECR CKN
Sbjct: 1133 LRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICELCGLMTPIASIKKQQFECRPCKN 1192

Query: 797  KTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            KT I Q+ IPYA KLLFQEL AM +A RM T
Sbjct: 1193 KTKIAQIIIPYAAKLLFQELAAMNVATRMFT 1223


>gi|56694378|gb|AAW22929.1| RNA polymerase II second largest subunit [Musa velutina]
          Length = 561

 Score = 1115 bits (2885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/562 (93%), Positives = 552/562 (98%), Gaps = 1/562 (0%)

Query: 171 QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 230
           QACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIH
Sbjct: 1   QACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIH 60

Query: 231 RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 290
           R+P++LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+
Sbjct: 61  RNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 120

Query: 291 DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 350
           DI ALQQRE+PE+G WHDLV+KGFIEYIDTEEEETTMISMTINDLV AR +PEEAY++TY
Sbjct: 121 DIRALQQRETPEEG-WHDLVSKGFIEYIDTEEEETTMISMTINDLVNARQNPEEAYSETY 179

Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
           THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYY
Sbjct: 180 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 239

Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
           PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE SVIMNQSSIDRGFFRSLFFRS
Sbjct: 240 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEVSVIMNQSSIDRGFFRSLFFRS 299

Query: 471 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
           YRDEEKKMGTLVKEDFGRP+R NTMGMRHGSY+KLDDDGLAPPGTRVSGEDVIIGKT+PI
Sbjct: 300 YRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTSPI 359

Query: 531 SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
            QD+AQGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKF
Sbjct: 360 PQDDAQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKF 419

Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
           SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK
Sbjct: 420 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 479

Query: 651 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVD
Sbjct: 480 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVD 539

Query: 711 DKIHSRGRGPVQILTRQPAEGR 732
           DKIHSRGRGPVQILTRQPAEGR
Sbjct: 540 DKIHSRGRGPVQILTRQPAEGR 561


>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
            [Encephalitozoon cuniculi]
          Length = 1141

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/831 (62%), Positives = 648/831 (77%), Gaps = 10/831 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+GT +FCETKKAY+ GYI+ RLLL ALGRR  DDRDHYG KR+DL+GPLL  LFR 
Sbjct: 319  VLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRT 378

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KL  D   ++QKC++NG++ N+   +KA  IT G +Y+LATGNWG QA A  TRAGV
Sbjct: 379  LFKKLCVDTTRHMQKCIENGREFNIALGLKASIITQGFRYALATGNWGDQAKAMQTRAGV 438

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVLNR  + STLSHLRR+N+PI +EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 439  AQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNL 498

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM YI+VGS++ P++EFLEE G E+ EEIS + +  ATKIFVNG WVGIH DP  L+K+
Sbjct: 499  SLMAYISVGSSSGPLIEFLEECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKS 558

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+ LRR ++++ EV +VRDIR KE+R+ +D GR  RPL +V+  +L+I   DI  L++ E
Sbjct: 559  LKLLRRSLEMDKEVSIVRDIREKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGE 618

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
                  W +LV  GFIE++D EEEE +MI+M    L     +  +    +YTHCEIHP+L
Sbjct: 619  IK----WDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSDVSV-SYTHCEIHPAL 673

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CAS IPFPDHNQSPRNTYQSAMGKQAMGIY TN+  RMDTL+ +L+YPQKPLVTT+
Sbjct: 674  ILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTK 733

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L F++LP+G NA+VAIACYSGYNQEDS+IMNQS+IDRG FRS F+R+Y D+E    
Sbjct: 734  SMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSR 793

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQ 538
              V E+F +P R   + M++ +Y+KLDDDGL  PGTRV+G+DV+IGK TPI   E +  +
Sbjct: 794  PGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKE 853

Query: 539  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
            A  Y  +D S ++R +ETG+VD V++T N DG +F KV+VRS RIPQ+GDKF+SRH QKG
Sbjct: 854  APVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKG 912

Query: 599  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
            T+G+T  QEDMP+T EGI PDII+NPHAIPSRMTIG LIEC++GKV+A  G+EGDATPF+
Sbjct: 913  TIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFS 972

Query: 659  DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
             VTVD IS  L   G+Q RG E MYNG TGR+L A +F GPTYYQRLKHMVDDKIH+R R
Sbjct: 973  GVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARAR 1032

Query: 719  GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
            GP+QILTRQP EGRSRDGGLRFGEMERDC+I+HGAS FLKERL D SDAY  +VC+ CGL
Sbjct: 1033 GPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCGL 1092

Query: 779  IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            +A+   K N  EC+GC N T++  V IPYA KLL QELM M IAPR+  +E
Sbjct: 1093 LAMGGSKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRIRFEE 1141


>gi|46277287|gb|AAS86834.1| RNA polymerase II second largest subunit, partial [Camellia
           japonica]
          Length = 559

 Score = 1114 bits (2882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/559 (95%), Positives = 551/559 (98%)

Query: 147 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 206
           KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS AYPILEFLEEWGTENF
Sbjct: 1   KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSXAYPILEFLEEWGTENF 60

Query: 207 EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 266
           EEISPAVIPQATKIFVNGCWVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI
Sbjct: 61  EEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 120

Query: 267 YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 326
           YTDYGRCSRPLFIVEKQRLLIKK+DI +LQQRE+PEDGGWHDLVAKG+IEYIDTEEEETT
Sbjct: 121 YTDYGRCSRPLFIVEKQRLLIKKKDIQSLQQRETPEDGGWHDLVAKGYIEYIDTEEEETT 180

Query: 327 MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
           MISMTINDL+ ARL+PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 181 MISMTINDLITARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 240

Query: 387 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
           KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN
Sbjct: 241 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 300

Query: 447 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
           QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG PDR+NTMGMRHGSYDKLD
Sbjct: 301 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGCPDRANTMGMRHGSYDKLD 360

Query: 507 DDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 566
           DDGLAPPGTRVSGEDVIIGKTTPI+Q++AQG A+RYT+RDHS SLRHSETGMVDQVLLTT
Sbjct: 361 DDGLAPPGTRVSGEDVIIGKTTPIAQEDAQGPAARYTKRDHSTSLRHSETGMVDQVLLTT 420

Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIV PHA
Sbjct: 421 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVYPHA 480

Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
           IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH
Sbjct: 481 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 540

Query: 687 TGRRLTAMIFLGPTYYQRL 705
           TGRRL AMIFLGPTYYQRL
Sbjct: 541 TGRRLPAMIFLGPTYYQRL 559


>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
 gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
          Length = 1141

 Score = 1114 bits (2882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/831 (62%), Positives = 648/831 (77%), Gaps = 10/831 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+GT +FCETKKAY+ GYI+ RLLL ALGRR  DDRDHYG KR+DL+GPLL  LFR 
Sbjct: 319  VLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRT 378

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KL  D   ++QKC++NG++ N+   +KA  IT G +Y+LATGNWG QA A  TRAGV
Sbjct: 379  LFKKLCVDTTRHMQKCIENGREFNIALGLKASIITQGFRYALATGNWGDQAKAMQTRAGV 438

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVLNR  + STLSHLRR+N+PI +EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 439  AQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNL 498

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM YI+VGS++ P++EFLEE G E+ EEIS + +  ATKIFVNG WVGIH DP  L+K+
Sbjct: 499  SLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKS 558

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+ LRR ++++ EV +VRDIR KE+R+ +D GR  RPL +V+  +L+I   DI  L++ E
Sbjct: 559  LKLLRRSLEMDKEVSIVRDIREKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGE 618

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
                  W +LV  GFIE++D EEEE +MI+M    L     +  +    +YTHCEIHP+L
Sbjct: 619  IK----WDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSDVSV-SYTHCEIHPAL 673

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CAS IPFPDHNQSPRNTYQSAMGKQAMGIY TN+  RMDTL+ +L+YPQKPLVTT+
Sbjct: 674  ILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTK 733

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L F++LP+G NA+VAIACYSGYNQEDS+IMNQS+IDRG FRS F+R+Y D+E    
Sbjct: 734  SMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSR 793

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQ 538
              V E+F +P R   + M++ +Y+KLDDDGL  PGTRV+G+DV+IGK TPI   E +  +
Sbjct: 794  PGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKE 853

Query: 539  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
            A  Y  +D S ++R +ETG+VD V++T N DG +F KV+VRS RIPQ+GDKF+SRH QKG
Sbjct: 854  APVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKG 912

Query: 599  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
            T+G+T  QEDMP+T EGI PDII+NPHAIPSRMTIG LIEC++GKV+A  G+EGDATPF+
Sbjct: 913  TIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFS 972

Query: 659  DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
             VTVD IS  L   G+Q RG E MYNG TGR+L A +F GPTYYQRLKHMVDDKIH+R R
Sbjct: 973  GVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARAR 1032

Query: 719  GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
            GP+QILTRQP EGRSRDGGLRFGEMERDC+I+HGAS FLKERL D SDAY  +VC+ CGL
Sbjct: 1033 GPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCGL 1092

Query: 779  IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            +A+   K N  EC+GC N T++  V IPYA KLL QELM M IAPR+  +E
Sbjct: 1093 LAMGGSKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRIRFEE 1141


>gi|410610275|gb|AFV74906.1| RNA polymerase II second largest subunit, partial [Thesium
           chinense]
          Length = 566

 Score = 1113 bits (2879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/566 (95%), Positives = 559/566 (98%)

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR
Sbjct: 1   ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 60

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           DP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+D
Sbjct: 61  DPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 120

Query: 292 IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
           I  LQQRE+ E+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+PEEAY++ YT
Sbjct: 121 IQVLQQRETAEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSEAYT 180

Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
Sbjct: 181 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 412 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
           QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 241 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 300

Query: 472 RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
           RDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+
Sbjct: 301 RDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIA 360

Query: 532 QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
           QDE+QGQ+SRYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361 QDESQGQSSRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 592 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
           SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 421 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 480

Query: 652 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
           GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDD
Sbjct: 481 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDD 540

Query: 712 KIHSRGRGPVQILTRQPAEGRSRDGG 737
           KIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 541 KIHSRGRGPVQILTRQPAEGRSRDGG 566


>gi|410610271|gb|AFV74904.1| RNA polymerase II second largest subunit, partial [Viscum
           alniformosanae]
          Length = 569

 Score = 1112 bits (2877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/569 (94%), Positives = 561/569 (98%)

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ+TKIFVNGCWVGIHR
Sbjct: 1   ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGCWVGIHR 60

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           DP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+D
Sbjct: 61  DPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 120

Query: 292 IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
           I ALQQR++ E+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV  RL+PE+AY+ TYT
Sbjct: 121 IQALQQRDTAEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSLRLNPEDAYSRTYT 180

Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
Sbjct: 181 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 412 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
           QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS+IMNQSS+DRGFFRSLFFRSY
Sbjct: 241 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSIIMNQSSVDRGFFRSLFFRSY 300

Query: 472 RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
           RDEEKKMGTL+KEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+
Sbjct: 301 RDEEKKMGTLIKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIA 360

Query: 532 QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
           QDE+QGQ+ RYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361 QDESQGQSFRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 592 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
           SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 421 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 480

Query: 652 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
           GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD
Sbjct: 481 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 540

Query: 712 KIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           KIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 541 KIHSRGRGPVQILTRQPAEGRSRDGGLRF 569


>gi|40644998|emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
          Length = 551

 Score = 1112 bits (2875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/551 (95%), Positives = 543/551 (98%)

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVN
Sbjct: 1   PAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVN 60

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           GCWVGIHR+P++LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQ
Sbjct: 61  GCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQ 120

Query: 284 RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 343
           RLLIKKRDI ALQ RESPEDGGWHDLV+KGFIEY+DTEEEETTMISMTINDL+ ARL+PE
Sbjct: 121 RLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLISARLNPE 180

Query: 344 EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 403
           EAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDT
Sbjct: 181 EAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDT 240

Query: 404 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 463
           LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF
Sbjct: 241 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 300

Query: 464 RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 523
           RSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI
Sbjct: 301 RSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 360

Query: 524 IGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 583
           IGKTTPISQD++QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRI
Sbjct: 361 IGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRI 420

Query: 584 PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 643
           PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK
Sbjct: 421 PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 480

Query: 644 VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ
Sbjct: 481 VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 540

Query: 704 RLKHMVDDKIH 714
           RLKHMVDDKIH
Sbjct: 541 RLKHMVDDKIH 551


>gi|120561277|gb|ABM27023.1| RNA polymerase II second largest subunit, partial [Neocallimastix
           frontalis]
          Length = 915

 Score = 1111 bits (2874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/757 (69%), Positives = 615/757 (81%), Gaps = 17/757 (2%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+GT    ETKKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLLG LFRM
Sbjct: 159 LLPHIGTKAHTETKKAYFFGYMIHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRM 218

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT DV   +QKC+D  ++ NL  AI+  TIT GLKYSLATGNWG Q+    +RAGV
Sbjct: 219 LFRKLTSDVSKSLQKCIDRNREFNLNVAIRPNTITDGLKYSLATGNWGAQSKFMQSRAGV 278

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRRLN+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 279 SQVLNRYTFASTLSHLRRLNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 338

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM Y++VGS++ PI+EFLEEW  EN EE+  + I  ATKIFVNG WVG+HRDPE LVKT
Sbjct: 339 ALMSYVSVGSSSAPIIEFLEEWSMENMEEVHVSHILNATKIFVNGVWVGVHRDPEHLVKT 398

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR- 298
           LR LRR  +VN E+ +VRDIR +ELRIYTD GR  RPLFIVE Q+L +KK  I  +Q++ 
Sbjct: 399 LRDLRRGQNVNAEISIVRDIRERELRIYTDAGRICRPLFIVENQKLKLKKSHIALIQEKN 458

Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-------------VQARLHPEEA 345
           E+ E  GW DL+  G IE+ID EEEETT+I M+  DL             +  RL     
Sbjct: 459 ETGEGWGWDDLIENGIIEFIDAEEEETTLICMSHEDLDPKDTEMDIQDYGISKRLKSRSV 518

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y+  +THCEIHPS+ILG+CASI+PFPDHNQSPRNTYQSAMGKQAMGIY+TN+Q RMDT+A
Sbjct: 519 YSRNWTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQLRMDTMA 578

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
            +LYYPQKPLVTTRAME+L FR LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRS
Sbjct: 579 NILYYPQKPLVTTRAMEYLRFRDLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGLFRS 638

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LF+RSY D+EKK+G    E+F +P R   + +RHG+Y+KL+DDGL  PG RV+G+D+IIG
Sbjct: 639 LFYRSYMDQEKKVGMFNVENFEKPTRETCLRLRHGTYEKLEDDGLIAPGIRVTGDDIIIG 698

Query: 526 KTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 583
           KT P+SQD E  GQ + + T+RD S  LR +ETG+VD+VL+T N DG+RFVKVRVRS RI
Sbjct: 699 KTIPLSQDSEELGQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMRFVKVRVRSTRI 758

Query: 584 PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 643
           PQ+GDKF+SRHGQKGTVGMTY  EDMP+TV GITPDII+NPHAIPSRMTIG L+EC++GK
Sbjct: 759 PQMGDKFASRHGQKGTVGMTYRTEDMPFTVNGITPDIIINPHAIPSRMTIGHLVECLLGK 818

Query: 644 VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           V+   G EGDATPFTDVTV+ ISK L + GYQ RGFE M+NGHTG++L A IFLGPTYYQ
Sbjct: 819 VSTLTGDEGDATPFTDVTVEAISKLLRENGYQSRGFEVMFNGHTGKKLQAQIFLGPTYYQ 878

Query: 704 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           RLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 879 RLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 915


>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
 gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
          Length = 1171

 Score = 1111 bits (2873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/837 (62%), Positives = 655/837 (78%), Gaps = 10/837 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+G   +CE +KAY+ GY++HRLLL  LGR AEDDRDH+G KR+D+AGPL+   F  
Sbjct: 334  LLPHLGVKQYCEPRKAYFIGYMVHRLLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQ 393

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIK-AKTITSGLKYSLATGNWG-QANAAGTRAG 118
            LFRKL +D +  +Q+ VD+G+  +L  AI+ A +IT GL+Y LATGNWG   +    R G
Sbjct: 394  LFRKLVQDSKRILQRQVDSGRHFDLNSAIRSASSITDGLRYQLATGNWGIDKSGKSVRTG 453

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            VSQVLNRLT+ ST+SHLRR+N+P+ R GKLAKPRQLHN+ WGM+CPAETPEGQA GLVKN
Sbjct: 454  VSQVLNRLTFMSTMSHLRRMNTPLERSGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKN 513

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            +ALM  ITVGS    + +FL EWG EN +EI+P+ I   TK+F+NG WVG+H D  ML +
Sbjct: 514  IALMCTITVGSLPNVVYDFLNEWGLENLDEINPSQIKHMTKVFLNGQWVGMHADATMLCE 573

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE---KQRLLIKKRDIIAL 295
            TLR LRR+ D++ EV ++RD++  ELRI+TD GR  RPL++V+    Q+L IK+  + AL
Sbjct: 574  TLRDLRRKRDIDPEVSIIRDLQANELRIFTDGGRACRPLYVVQPPPSQKLCIKREHVEAL 633

Query: 296  QQRE-SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHPEEAYADTYTH 352
            ++   + E GGW  LV +G +EYID EEEET M++M ++DL   Q R     +Y  TYTH
Sbjct: 634  RRMLLNNEHGGWDMLVEEGLVEYIDAEEEETCMVAMFVDDLRNAQRRKSKASSYCHTYTH 693

Query: 353  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 412
            CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  R+DT+A+VL YPQ
Sbjct: 694  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYATNFNMRIDTMAHVLNYPQ 753

Query: 413  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 472
            KPLV TRAME+L FR+LPAG NAIVAI  YSGYNQEDS+IMN SSIDRGF RS+ F+SY 
Sbjct: 754  KPLVGTRAMEYLRFRELPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYM 813

Query: 473  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-S 531
             +EK+ G  V E+F  P  S T  M+ G Y KLD+DGL  PGTRV G+D++IGK +PI +
Sbjct: 814  ADEKRQGAQVVEEFRAPSWSKTYAMKRGDYSKLDNDGLINPGTRVHGDDILIGKVSPIPN 873

Query: 532  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
            Q + +G+  +YT RD S++L+ ++ G+VDQV+L+ NA G +F K+RVR++R+P IGDKF+
Sbjct: 874  QTDEEGRIQKYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVRTLRVPTIGDKFA 933

Query: 592  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
            SRHGQKGT+G++Y QEDMP+T  G+ PDII+NPHA+PSRMTIG L+EC++GKV    G+E
Sbjct: 934  SRHGQKGTMGISYRQEDMPFTQFGVVPDIIMNPHAVPSRMTIGHLVECLLGKVGLLSGEE 993

Query: 652  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
            GDATPF+ VTV  I   LH+ G+Q +G E MYNGHTG RL A IF+GPTYYQRLKHMV+D
Sbjct: 994  GDATPFSQVTVHEIMARLHELGFQRQGREVMYNGHTGLRLPAKIFIGPTYYQRLKHMVED 1053

Query: 712  KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 771
            KIHSR RGP+Q+LTRQP EGR R+GGLRFGEMERDCMI+HGA+ FLKERLFD SDAYRVH
Sbjct: 1054 KIHSRARGPMQMLTRQPMEGRGREGGLRFGEMERDCMISHGAAKFLKERLFDISDAYRVH 1113

Query: 772  VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            VC++CG+ AIANL KN +ECR CKN T I QVHIPYACKLLFQELM M+I P+++ K
Sbjct: 1114 VCDNCGMFAIANLYKNHYECRACKNST-ISQVHIPYACKLLFQELMTMSIMPKLVLK 1169


>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1140

 Score = 1109 bits (2868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/831 (62%), Positives = 649/831 (78%), Gaps = 11/831 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+GT +FCETKKAY+ GYI+ RLLL ALGR+  DDRDHYG KR+DL+GPLL  LFR 
Sbjct: 319  VLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRKNPDDRDHYGKKRMDLSGPLLASLFRT 378

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KL  D   ++QKC++NG++ N+   +KA  IT G +Y+LATGNWG QA A  TRAGV
Sbjct: 379  LFKKLCADTTRHMQKCIENGREFNIALGLKASIITQGFRYALATGNWGDQAKAMQTRAGV 438

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVLNR  + STLSHLRR+N+PI +EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 439  AQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNL 498

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM YI+VGS++ P++EFLEE G E+ EEIS   +  ATKIFVNG WVGIH DP  L+K+
Sbjct: 499  SLMAYISVGSSSGPLVEFLEECGVESLEEISTPQLNAATKIFVNGIWVGIHSDPVYLIKS 558

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+ LRR ++++ EV +VRDIR KE+RI +D GR  RPL +V+   L+I   DI  L++ E
Sbjct: 559  LKLLRRSLEMDKEVSIVRDIREKEIRIQSDAGRPCRPLLVVKNNELVITPEDIKRLKRGE 618

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
                  W +L+++GFIE++D EEEE +MI+M    L +++   +     +YTHCEIHP+L
Sbjct: 619  I----KWDNLISEGFIEFLDVEEEEMSMIAMNTKALEESKKASDVKI--SYTHCEIHPAL 672

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CAS IPFPDHNQSPRNTYQSAMGKQAMGIY TN+  RMDTL+ +L+YPQKPLVTT+
Sbjct: 673  ILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTK 732

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L F++LP+G NA+VAIACYSGYNQEDS+IMNQS+IDRG FRS F+R+Y D+E    
Sbjct: 733  SMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSR 792

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQ 538
              V E+F +P R   + M++ +Y+KLD+DGL  PGTRV+G+DV+IGK TPI   E +  +
Sbjct: 793  PGVNEEFCKPSRGTVLRMKNLNYNKLDEDGLISPGTRVTGDDVLIGKITPILDPERSTKE 852

Query: 539  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
            A  Y  +D S ++R +ETG+VD V++T N DG +F K++VRS RIPQ+GDKF+SRH QKG
Sbjct: 853  APVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKIKVRSGRIPQMGDKFASRHAQKG 911

Query: 599  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
            T+G+T  QEDMP+T +GI PDII+NPHAIPSRMTIG LIEC++GKV+A  G+EGDATPF+
Sbjct: 912  TIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFS 971

Query: 659  DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
            D+TV+ IS  L   G+Q RG E MYNG TGR+L A +F GPTYYQRLKHMVDDKIH+R R
Sbjct: 972  DMTVNEISAKLKSYGFQQRGLEVMYNGMTGRKLRAQVFFGPTYYQRLKHMVDDKIHARAR 1031

Query: 719  GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
            GP+QILTRQP EGRSRDGGLRFGEMERDC+I+HGAS FLKERL D SDAY   VC  CGL
Sbjct: 1032 GPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCFVCNFCGL 1091

Query: 779  IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            +A+   K N  EC+GC N T++  + IPYA KLL QELM M IAPR+  +E
Sbjct: 1092 LAMGGSKVN--ECKGCNNTTNVSMIEIPYAFKLLVQELMGMNIAPRIRFEE 1140


>gi|3002941|gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata]
          Length = 555

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/556 (94%), Positives = 545/556 (98%), Gaps = 1/556 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQAT
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVEKQRLLIKK+DI ALQ RE+ E+G WHDLVAKGFIEYIDTEEEETTMISMTI+DLV A
Sbjct: 121 IVEKQRLLIKKKDIRALQLRETQEEG-WHDLVAKGFIEYIDTEEEETTMISMTISDLVSA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           RL+PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180 RLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKT+PISQD++QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+
Sbjct: 360 GEDVIIGKTSPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RSVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLG
Sbjct: 480 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLG 539

Query: 699 PTYYQRLKHMVDDKIH 714
           PTYYQRLKHMVDDKIH
Sbjct: 540 PTYYQRLKHMVDDKIH 555


>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1245

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/863 (61%), Positives = 654/863 (75%), Gaps = 37/863 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHV T +  E+KKAY+ GY++HRL + ALGR+  DDRDH+GNKRLDLAGPL+  +F +
Sbjct: 387  FLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRKELDDRDHFGNKRLDLAGPLMAEMFNV 446

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            +F KL  D+  Y++KCV+  K+  L  AI+  TIT GLKY+LATGNWG+ +   TRAGVS
Sbjct: 447  VFGKLREDMYRYLKKCVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRD--NTRAGVS 504

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+ K AKPRQLHN+ WGM+CPAETPEG ACGLVKNLA
Sbjct: 505  QVLNRYTFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLA 564

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS + P++EFLEEWG E+  E   A  P ATK+FVNG W+GIHRD   L   L
Sbjct: 565  LMSYISVGSYSAPVMEFLEEWGLEDLSEYQDA--PTATKVFVNGVWMGIHRDAPTLHNNL 622

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQR 298
             ++RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L +K+  I  + Q 
Sbjct: 623  LQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQM 682

Query: 299  --ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------------HPE 343
              E    G W  L+++G +EY+D  EEET +I+MT  DLV AR              H  
Sbjct: 683  ADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNL 742

Query: 344  EAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 392
            E++           +  YTH EIHPS+ILGVCASI+PFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 743  ESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGV 802

Query: 393  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 452
             +TNYQ RMDT+  VLYYPQKPL TTR+ME+L F +LPAG NAIVAI CYSGYNQEDSVI
Sbjct: 803  CLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVI 862

Query: 453  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDG 509
            MNQSSIDRG FRSL+FRSY D EK  G +  E   +PDR+ T+ M+HG+   Y KLD DG
Sbjct: 863  MNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDG 922

Query: 510  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTN 567
            L  PGT V+G+D++IGKT P+ +D E  GQ ++ +T+RD S  L+ +E G+VDQV+L+TN
Sbjct: 923  LVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTN 982

Query: 568  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
             +G  FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PDII+NPHAI
Sbjct: 983  GEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAI 1042

Query: 628  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
            PSRMTIG L+EC++ KV+   G EGDATPFT++TV+ +SK L   GYQ RGFE +Y+GHT
Sbjct: 1043 PSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQSRGFEVLYHGHT 1102

Query: 688  GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
            GR+L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1103 GRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDC 1162

Query: 748  MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 807
            MI+HG + FLKER++D SDA+R+HVC+ CGL+A+ANLKK  F C  C+N T I QV+IPY
Sbjct: 1163 MISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQVYIPY 1222

Query: 808  ACKLLFQELMAMAIAPRMLTKED 830
            A KLLFQEL AM IA RM  + D
Sbjct: 1223 AAKLLFQELQAMNIACRMYGETD 1245


>gi|336265263|ref|XP_003347404.1| hypothetical protein SMAC_08679 [Sordaria macrospora k-hell]
 gi|380087481|emb|CCC14221.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1274

 Score = 1108 bits (2865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/867 (62%), Positives = 657/867 (75%), Gaps = 53/867 (6%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   + CET+KA++ GY++H+LL C LGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 413  LLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRG 472

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            + R+LT+D+  Y+++CVD  K  +L   IKA T+T+GLKYSLATGNWG Q  A  + AGV
Sbjct: 473  IVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGV 532

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GKLAKP              ETPEGQACGLVKNL
Sbjct: 533  SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKP-------------PETPEGQACGLVKNL 579

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM +++VG+ A PI+EF+     E  EE  P   P ATK+FVNG WVG+H+DP+ LV  
Sbjct: 580  SLMCFVSVGTLADPIIEFMVARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTL 639

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKK 289
            ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF VE++          +L++ K
Sbjct: 640  VQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEDNGESGVEKGQLILTK 699

Query: 290  RDIIALQQRES----PED-GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP-- 342
              I  L+Q +      ED  GW  L+  G IEY+D EEEET MI MT  DL   R H   
Sbjct: 700  EHIRRLEQDKELGKYHEDYFGWQGLLESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFK 759

Query: 343  ----EEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                E+  A+                YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQS
Sbjct: 760  GREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQS 819

Query: 384  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
            AMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYS
Sbjct: 820  AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYS 879

Query: 444  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
            GYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +PDRSNT+  +HG+YD
Sbjct: 880  GYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYD 939

Query: 504  KLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQ 561
            KL++DG+  PG RV+G+D+IIGKT+PI+ D  + GQ  +++ +RD S  LR +E+G+VD 
Sbjct: 940  KLENDGIIAPGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDS 999

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            V  TTN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII
Sbjct: 1000 VAFTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDII 1059

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            +NPHAIPSRMTI  LIEC++ KV +  G EGDATPFTDVTVD++S  L + GYQ RGFE 
Sbjct: 1060 INPHAIPSRMTIAHLIECLLSKVGSLKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEI 1119

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
            MY+GHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 1120 MYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 1179

Query: 742  EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 800
            EMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SFECR CKNKT I
Sbjct: 1180 EMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKI 1239

Query: 801  VQVHIPYACKLLFQELMAMAIAPRMLT 827
             QVH+PYA KLLFQELM+M IA RM T
Sbjct: 1240 AQVHMPYAAKLLFQELMSMNIASRMFT 1266


>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus neoformans
            var. grubii H99]
          Length = 1245

 Score = 1107 bits (2864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/863 (61%), Positives = 653/863 (75%), Gaps = 37/863 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHV T +  E+KKAY+ GY++HRL + ALGR+  DDRDH+GNKRLDLAGPL+  +F +
Sbjct: 387  FLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRKELDDRDHFGNKRLDLAGPLMAEMFNV 446

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            +F KL  D+  Y++KCV+  K+  L  AI+  TIT GLKY+LATGNWG+ +   TRAGVS
Sbjct: 447  VFGKLREDMYRYLKKCVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRD--NTRAGVS 504

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ STLSHLRR N+PIGR+ K AKPRQLHN+ WGM+CPAETPEG ACGLVKNLA
Sbjct: 505  QVLNRYTFTSTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLA 564

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS + P++EFLEEWG E+  E   A  P ATK+FVNG W+GIHRD   L   L
Sbjct: 565  LMSYISVGSYSAPVMEFLEEWGLEDLSEYQDA--PTATKVFVNGVWMGIHRDAPTLHNNL 622

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQR 298
             ++RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L +K+  I  + Q 
Sbjct: 623  LQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQM 682

Query: 299  --ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------------HPE 343
              E    G W  L+++G +EY+D  EEET +I+MT  DLV AR              H  
Sbjct: 683  ADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNL 742

Query: 344  EAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 392
            E++           +  YTH EIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 743  ESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 802

Query: 393  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 452
             +TNYQ RMDT+  VLYYPQKPL TTR+ME+L F +LPAG NAIVAI CYSGYNQEDSVI
Sbjct: 803  CLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVI 862

Query: 453  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDG 509
            MNQSSIDRG FRSL+FRSY D EK  G +  E   +PDR+ T+ M+HG+   Y KLD DG
Sbjct: 863  MNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDG 922

Query: 510  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTN 567
            L  PGT V+G+D++IGKT P+ +D E  GQ ++ +T+RD S  L+ +E G+VDQV+L+TN
Sbjct: 923  LVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTN 982

Query: 568  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
             +G  FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PDII+NPHAI
Sbjct: 983  GEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAI 1042

Query: 628  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
            PSRMTIG L+EC++ KV+   G EGDATPFT++TV+ +SK L   GYQ RGFE +Y+GHT
Sbjct: 1043 PSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQSRGFELLYHGHT 1102

Query: 688  GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
            GR+L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1103 GRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDC 1162

Query: 748  MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 807
            MI+HG + FLKER++D SDA+R+HVC+ CGL+A+ANLKK  F C  C+N T I QV+IPY
Sbjct: 1163 MISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQVYIPY 1222

Query: 808  ACKLLFQELMAMAIAPRMLTKED 830
            A KLLFQEL AM IA RM  + D
Sbjct: 1223 AAKLLFQELQAMNIACRMYGETD 1245


>gi|367479107|gb|AEX16088.1| RPB2 [Mucor circinelloides f. lusitanicus]
          Length = 931

 Score = 1107 bits (2863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/768 (66%), Positives = 620/768 (80%), Gaps = 24/768 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPHVGT    ET+K+Y+FGY+IHRLLL AL RR  DDRDHYG KR+DLAGPL+  LFR+
Sbjct: 165 LLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMASLFRL 224

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+DV  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 225 LFKKLTKDVAKYLQKCIESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQSRAGV 284

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 285 SQVLNRYTYTSTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 344

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGS+A P++ FLEEW  EN EE+S   I  ATK+FVNG W+GIHRDP  L+ +
Sbjct: 345 ALMSYISVGSSATPLIMFLEEWAMENLEELSATSIADATKVFVNGVWIGIHRDPGELINS 404

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           L+++RR VD++ EV +VRDIR KELR+YTD GRC RPLF+VE Q+L + +  ++ +Q  E
Sbjct: 405 LKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLKLTRDHVLRIQDTE 464

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE--------------- 344
             +D GW +++A G +EY+D +EEET MI MT  DL ++R+  E                
Sbjct: 465 --DDYGWQNMIADGIVEYVDADEEETAMICMTPEDLAESRMTAEYGAPLQETRDLFSRVK 522

Query: 345 ----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
               +Y+ T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q R
Sbjct: 523 SQTGSYSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQTR 582

Query: 401 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
           MDTLA +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDR
Sbjct: 583 MDTLANILYYPQKPLTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDR 642

Query: 461 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
           G FRSLFFR+Y D EKK G +  E+F +P R  T+ ++HG+Y+KL++DGL  PGTRVSG+
Sbjct: 643 GLFRSLFFRTYMDAEKKAGMMFMEEFEKPTRDTTLRLKHGTYEKLEEDGLIAPGTRVSGD 702

Query: 521 DVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           D+IIGKT PI  D E  GQ  + + +RD S  LR +ETG+VDQV+LTTN DGL+FVKVRV
Sbjct: 703 DIIIGKTAPIPADSEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRV 762

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RS R+PQ+GDKF+SRHGQKGT+GMTY QED P++ EGITPD+I+NPHAIPSRMTIG +IE
Sbjct: 763 RSTRVPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIE 822

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           C++GKV+   G EGDATPFTDVTV+ IS+AL   GYQ RGFE MYNG TGR+L   +FLG
Sbjct: 823 CLLGKVSTLTGNEGDATPFTDVTVEAISQALQAQGYQSRGFEVMYNGFTGRKLNVQVFLG 882

Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
           PTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERD
Sbjct: 883 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 930


>gi|401827615|ref|XP_003888100.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
 gi|392999300|gb|AFM99119.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
          Length = 1141

 Score = 1106 bits (2861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/831 (62%), Positives = 650/831 (78%), Gaps = 10/831 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+GT +FCETKKAY+ GYI+ RLLL ALGRR  DDRDHYG KR+DL+GPLL  LFR 
Sbjct: 319  VLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRT 378

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KL  D   ++QKC++NG++ N+   +KA  IT G +Y+LATGNWG QA A  TRAGV
Sbjct: 379  LFKKLCADTTRHMQKCIENGREFNIALGLKASIITQGFRYALATGNWGDQAKAMQTRAGV 438

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVLNR  + STLSHLRR+N+PI +EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 439  AQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNL 498

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM YI+VGS++ P++EFLEE G E+ EEIS   +  ATK+FVNG W+GIH DP  LVK+
Sbjct: 499  SLMAYISVGSSSGPLIEFLEECGVESLEEISNFQLNTATKVFVNGVWIGIHSDPVYLVKS 558

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+ LRR ++++ EV +VRDIR KE+RI +D GR  RPL +V+  +L+I + DI  L++ E
Sbjct: 559  LKLLRRSLEMDKEVSIVRDIREKEIRIQSDAGRPCRPLMVVKDNKLVITEEDIGRLRRGE 618

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
                  W +L+ +GFIE++D EEEE +MI+M+   L   R    +    +YTHCEIHP+L
Sbjct: 619  IK----WDNLIGEGFIEFLDVEEEEMSMIAMSTKVLDDERKSSSDVKI-SYTHCEIHPAL 673

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CAS IPFPDHNQSPRNTYQSAMGKQAMGIY TN+  RMDTL+ +L+YPQKPLVTT+
Sbjct: 674  ILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTK 733

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L F++LP+G NA+VAIACYSGYNQEDSVIMNQS+IDRG FRS F+R+Y D+E    
Sbjct: 734  SMEYLRFKELPSGQNALVAIACYSGYNQEDSVIMNQSAIDRGLFRSFFYRTYTDQESMSR 793

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQ 538
              V E+F +P+R + + M++ +Y+KLDDDGL  PGTRV+G+DV+IGK TPI   E +  +
Sbjct: 794  PGVNEEFCKPNRGSVLRMKNLNYNKLDDDGLINPGTRVTGDDVLIGKITPILDPERSTKE 853

Query: 539  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
               Y  +D S ++R +ETG+VD V++T N DG +F KV+VRS RIPQ+GDKF+SRH QKG
Sbjct: 854  TPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKG 912

Query: 599  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
            T+G+T  QEDMP+T +GI PDII+NPHAIPSRMTIG LIEC++GKV+A  G+EGDATPF+
Sbjct: 913  TIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFS 972

Query: 659  DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
             ++V+ IS  L   G+Q RG E MYNG TGR+L A IF GPTYYQRLKHMVDDKIH+R R
Sbjct: 973  GMSVNEISARLKSYGFQQRGLEVMYNGMTGRKLRAQIFFGPTYYQRLKHMVDDKIHARAR 1032

Query: 719  GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
            GP+QILTRQP EGRSRDGGLRFGEMERDC+I+HGAS FLKERL D SDAY  +VC  CGL
Sbjct: 1033 GPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCNICGL 1092

Query: 779  IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            +A+   K N  EC+GC N T++  V IPYA KLL QELM M IAPR+  +E
Sbjct: 1093 LAMGGSKVN--ECKGCSNTTNVSIVEIPYAFKLLIQELMGMNIAPRIRFEE 1141


>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
            SJ-2008]
          Length = 1141

 Score = 1103 bits (2852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/831 (61%), Positives = 647/831 (77%), Gaps = 10/831 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+GT +FCETKKAY+ GYI+ RLLL ALGRR  DDRDHYG KR+DL+GPLL  LFR 
Sbjct: 319  VLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRT 378

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KL  D   ++QKC++NG++ N+   +KA  IT G +Y+LATGNWG QA A  TRAGV
Sbjct: 379  LFKKLCADTTRHMQKCIENGREFNIALGLKASIITQGFRYALATGNWGDQAKAMQTRAGV 438

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVLNR  + STLSHLRR+N+PI +EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 439  AQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNL 498

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM YI+VGS++ P++EFLEE G E+ EEIS   +  ATK+FVNG WVGIH DP  L+K+
Sbjct: 499  SLMAYISVGSSSGPLIEFLEECGVESLEEISTLQLSTATKVFVNGVWVGIHSDPVYLIKS 558

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+ LRR ++++ EV +VRDIR KE+RI +D GR  RPL +V   +L+I   DI  L++ E
Sbjct: 559  LKLLRRSLEIDKEVSIVRDIREKEIRIQSDAGRPCRPLMVVRDNKLVITIEDIRKLRRGE 618

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
                  W +L+ +GFIE++D EEEE +MI+M+   ++            +YTHCEIHP+L
Sbjct: 619  IK----WDNLIGEGFIEFLDVEEEEMSMIAMS-TKVLNDECKNSSDVKISYTHCEIHPAL 673

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+CAS IPFPDHNQSPRNTYQSAMGKQAMGIY TN+  RMDTL+ +L+YPQKPLVTT+
Sbjct: 674  ILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTK 733

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME+L F++LP+G NA+VAIACYSGYNQEDS+IMNQS+IDRG FRS F+R+Y D+E    
Sbjct: 734  SMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSR 793

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQ 538
              V E+F +P+R + + M++ +Y+KLD+DGL  PG RV+G+DV+IGK TPI   E +  +
Sbjct: 794  PGVNEEFCKPNRGSVLRMKNLNYNKLDEDGLISPGVRVTGDDVLIGKITPILDPERSTKE 853

Query: 539  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
            A  Y  +D S ++R +ETG+VD V++T N DG +F KV++RS RIPQ+GDKF+SRH QKG
Sbjct: 854  APVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKIRSGRIPQMGDKFASRHAQKG 912

Query: 599  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
            T+G+T  QEDMP+T +GI PDII+NPHAIPSRMTIG LIEC++GKV+A  G+EGDATPF+
Sbjct: 913  TIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFS 972

Query: 659  DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
             ++V+ IS  L   G+Q RG E MYNG TGR+L A IF GPTYYQRLKHMVDDKIH+R R
Sbjct: 973  GMSVNEISTRLKSYGFQQRGLEVMYNGMTGRKLRAQIFFGPTYYQRLKHMVDDKIHARAR 1032

Query: 719  GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
            GP+QILTRQP EGRSRDGGLRFGEMERDC+I+HGAS FLKERL D SDAY  +VC  CGL
Sbjct: 1033 GPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCNLCGL 1092

Query: 779  IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            +A+   K N  EC+GC N T++  V IPYA KLL QELM M IAPR+  +E
Sbjct: 1093 LAMGGTKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRIRFEE 1141


>gi|301616295|ref|XP_002937598.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Xenopus
            (Silurana) tropicalis]
          Length = 1151

 Score = 1101 bits (2848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/839 (64%), Positives = 636/839 (75%), Gaps = 47/839 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586

Query: 240  LRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            LR+LRR++D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++R
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKER 646

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS
Sbjct: 647  EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPS 701

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTT
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV-----IMNQSSIDRG--FFRSLFFRSY 471
            R+ME+L FR+LPAGIN+IVA                  I   ++I        S+F+RSY
Sbjct: 762  RSMEYLRFRELPAGINSIVAXXXXXXXXXXXXXXXXXHISLATNIKHPSECQESVFYRSY 821

Query: 472  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--P 529
            +++E K G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P
Sbjct: 822  KEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLP 881

Query: 530  ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 589
             ++DE +    RYT+RD S  LR SETG+VDQV++T N +G +F K+R            
Sbjct: 882  ENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIR------------ 929

Query: 590  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 649
                              DMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G
Sbjct: 930  ------------------DMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKG 971

Query: 650  KEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
            + GDATPF D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHM
Sbjct: 972  EIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHM 1031

Query: 709  VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 768
            VDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y
Sbjct: 1032 VDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPY 1091

Query: 769  RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            +VHVC  CGL+AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1092 QVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1150


>gi|40644545|emb|CAD88975.1| DNA-directed RNA polymerase subunit B [Myrtus communis]
          Length = 572

 Score = 1100 bits (2846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/566 (95%), Positives = 549/566 (96%), Gaps = 2/566 (0%)

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALMVY+TVGSAAYPILEFLEEWGTENFEEISP VIPQATKIFVN
Sbjct: 1   PAETPEGQACGLVKNLALMVYVTVGSAAYPILEFLEEWGTENFEEISPVVIPQATKIFVN 60

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           GCWVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ
Sbjct: 61  GCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 120

Query: 284 RLLIKKRDIIALQQRES-PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 342
           RLLIKK+DI ALQQRE  P+D GWH+LVAKGFIEYIDTEEEETTMISMTINDLVQARL  
Sbjct: 121 RLLIKKKDIHALQQREEGPDDVGWHNLVAKGFIEYIDTEEEETTMISMTINDLVQARLXX 180

Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
           E AY++TYTHCEIHPSLILGVCASIIPFPDHNQS RNTYQSAMGKQAMGIYVTNYQFRMD
Sbjct: 181 EXAYSETYTHCEIHPSLILGVCASIIPFPDHNQSXRNTYQSAMGKQAMGIYVTNYQFRMD 240

Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
           TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF
Sbjct: 241 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 300

Query: 463 FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 522
           FRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDV
Sbjct: 301 FRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 360

Query: 523 IIGKTTPIS-QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 581
           IIGKTTPI+      G ASRY+RRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSV
Sbjct: 361 IIGKTTPIAXXXXXXGXASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSV 420

Query: 582 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 641
           RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI CIM
Sbjct: 421 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIXCIM 480

Query: 642 GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 701
           GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY
Sbjct: 481 GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 540

Query: 702 YQRLKHMVDDKIHSRGRGPVQILTRQ 727
           YQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 541 YQRLKHMVDDKIHSRGRGPVQILTRQ 566


>gi|46277251|gb|AAS86816.1| RNA polymerase II second largest subunit, partial [Cycas revoluta]
          Length = 567

 Score = 1100 bits (2844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/568 (92%), Positives = 545/568 (95%), Gaps = 2/568 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHRDP++LVKTLR+LRR+VDVNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVEKQRL
Sbjct: 61  WVGIHRDPDLLVKTLRQLRRQVDVNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVEKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK DI  LQQRESPE+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV AR  P  +
Sbjct: 121 LIKKSDIRTLQQRESPEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVNARNSPSTS 179

Query: 346 YADT-YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 404
            +   YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTL
Sbjct: 180 SSIVKYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTL 239

Query: 405 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 464
           AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR
Sbjct: 240 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 465 SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 524
           SLF+RSYRDEEK+MGTLVKE+FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVII
Sbjct: 300 SLFYRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 525 GKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           GKTTPI+QDEA GQA+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIP
Sbjct: 360 GKTTPITQDEAGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIP 419

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 420 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 479

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQR
Sbjct: 480 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQR 539

Query: 705 LKHMVDDKIHSRGRGPVQILTRQPAEGR 732
           LKHMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 540 LKHMVDDKIHSRGRGPVQILTRQPAEGR 567


>gi|67810699|gb|AAY82002.1| RNA polymerase II second largest subunit [Selaginella erythropus]
          Length = 581

 Score = 1099 bits (2842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/581 (89%), Positives = 549/581 (94%), Gaps = 1/581 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALM YITVGSAA PIL FLEEW TENFEEISPAVIP +T
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLEEWSTENFEEISPAVIPNST 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNG WVGIHR+PE LVKTLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGAWVGIHREPEHLVKTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVEKQRLLIKK DI ALQQ+E+ E+G WH+LVAKGFIEY+DTEEEETTMISMTI DLV A
Sbjct: 121 IVEKQRLLIKKSDIRALQQKEAGENG-WHELVAKGFIEYVDTEEEETTMISMTILDLVNA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           RL+P+EAY+DTYTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGI+VTNYQ
Sbjct: 180 RLNPDEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIHVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRS+F+RSYRDEEKK GTLVKE+F RP+R  T GMRHGSYDKLDDDG+APPGTRVS
Sbjct: 300 DRGFFRSIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKTTP++QDE   QA RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK RV
Sbjct: 360 GEDVIIGKTTPVTQDETSTQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRV 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RS+RIPQIGDKFSSRHGQKGT+GMTYTQEDMP+T EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSIRIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAA MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIF+G
Sbjct: 480 CIMGKVAALMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLNAMIFIG 539

Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
           PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG R
Sbjct: 540 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGXR 580


>gi|120561275|gb|ABM27022.1| RNA polymerase II second largest subunit, partial [Neocallimastix
           frontalis]
          Length = 915

 Score = 1098 bits (2841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/757 (69%), Positives = 613/757 (80%), Gaps = 17/757 (2%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+GT    ETKKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLLG LFRM
Sbjct: 159 LLPHIGTRAHTETKKAYFFGYMIHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRM 218

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV   +Q C+D  ++ NL  AI+  TI+ GLKYSLATGNWG Q+    +RAGV
Sbjct: 219 LFRKLTKDVSKTLQMCIDRNREFNLNSAIRPNTISDGLKYSLATGNWGAQSKFMQSRAGV 278

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRRLN+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 279 SQVLNRYTFASTLSHLRRLNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 338

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM Y++VGS++ PI+EFLEEW  EN EE+  + I  ATKIFVNG WVGIHRDP+ LVKT
Sbjct: 339 ALMSYVSVGSSSAPIVEFLEEWTMENMEEVHVSHIIDATKIFVNGVWVGIHRDPDHLVKT 398

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR- 298
           LR LRR  +VN E+ +VRDIR KEL+IYTD GR  RPLFIVE Q+L +KK  I  +Q+R 
Sbjct: 399 LRDLRRSQNVNAEISIVRDIREKELKIYTDAGRICRPLFIVENQKLKLKKSHIAMIQERN 458

Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-------------VQARLHPEEA 345
           E+ +  GW DL+  G IE+ID EEEETT+I M+  DL                RL     
Sbjct: 459 ETGQGWGWDDLIENGIIEFIDAEEEETTLICMSHEDLDPKDGEMNIQDYGTSKRLKSRSV 518

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y+  +THCEIHPS+ILG+CASI+PFPDHNQSPRNTYQSAMGKQAMGIY+TN+Q RMDT+A
Sbjct: 519 YSRNWTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQLRMDTMA 578

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
            +LYYPQKPLVTTRAME+L FR LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRS
Sbjct: 579 NILYYPQKPLVTTRAMEYLRFRDLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGLFRS 638

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LF+RSY D+EKK+G    E+F +P R   + +RHG+Y+KL+DDGL  PG RV+G+D+IIG
Sbjct: 639 LFYRSYMDQEKKVGMFNVENFEKPTRETCLRLRHGTYEKLEDDGLIAPGIRVTGDDIIIG 698

Query: 526 KTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 583
           KT P+SQD  + GQ + + T+RD S  LR +ETG+VD+VL+T N DG++FVKVRVRS RI
Sbjct: 699 KTIPLSQDSQELGQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMKFVKVRVRSTRI 758

Query: 584 PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 643
           PQ+GDKF+SRHGQKGTVGMTY  EDMP+T  GITPDII+NPHAIPSRMTIG L+EC++GK
Sbjct: 759 PQMGDKFASRHGQKGTVGMTYRTEDMPFTFNGITPDIIINPHAIPSRMTIGHLVECLLGK 818

Query: 644 VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           V+   G EGDATPFTDVTV+ ISK L + G+Q RGFE M+NGHTG++L A IFLGPTYYQ
Sbjct: 819 VSTLTGDEGDATPFTDVTVEAISKLLRENGFQSRGFEVMFNGHTGKKLQAQIFLGPTYYQ 878

Query: 704 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           RLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 879 RLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 915


>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
 gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
          Length = 1143

 Score = 1097 bits (2836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/832 (61%), Positives = 643/832 (77%), Gaps = 11/832 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+GT +FCETKKAY+ GY++ +LLL ALGR+ EDDRDHYG KR+DLAGPLL  LFR 
Sbjct: 319  LLPHIGTQEFCETKKAYFLGYMVQKLLLVALGRKREDDRDHYGKKRMDLAGPLLASLFRS 378

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            L++KL  +   ++QKC++ G+D N+   +KA TI  G +Y++ATGNWG QA+A  ++AGV
Sbjct: 379  LYKKLCSETAKHMQKCIEGGRDFNIALGLKASTIAQGFRYAIATGNWGDQAHAMQSKAGV 438

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVLNR  + STLSHLRR+N+PI +EGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 439  AQVLNRYNFVSTLSHLRRVNTPIEKEGKLAKPRQLHNTHWGMICPAETPEGQACGLVKNL 498

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM YI+VGS++ PI+EFLEE G E+ EEIS   +  ATK+FVNG WVGIH DPE L+ +
Sbjct: 499  SLMAYISVGSSSEPIVEFLEECGLESLEEISHLQLQNATKVFVNGVWVGIHEDPEYLISS 558

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            LR LRR ++++ EV ++RDIR KE++I +D GR  RPLF+V+  +L I +    A   +E
Sbjct: 559  LRMLRRTLEIDKEVSIIRDIREKEIKIQSDSGRPCRPLFVVKNNKLCIDE----AYSNKE 614

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHPEEAYADTYTHCEIHP 357
              +   W+D +  G IE++D EEEE +MI+M+ + L  V+  L   E     YTHCEIHP
Sbjct: 615  EIKRCTWNDFIENGLIEFLDVEEEEVSMIAMSPDQLNSVKKDLRASEDLNINYTHCEIHP 674

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            + ILG+CAS+IPFPDHNQSPRNTYQSAM KQAMGIY TN+  RMDTL+ +L+YPQKPLVT
Sbjct: 675  ATILGICASVIPFPDHNQSPRNTYQSAMVKQAMGIYATNFMLRMDTLSNILFYPQKPLVT 734

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            T++ME++ F++LP G NAIVAIA Y+GYNQEDS+IMNQS+IDRG FRS F+R+Y D+E  
Sbjct: 735  TKSMEYIRFKELPPGQNAIVAIASYTGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQENT 794

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
                  E+F +P RS  + MR+ +Y KLD+DG+ P GTRV+G+DV+IGK +PI   E   
Sbjct: 795  TRPGTHEEFCKPLRSEVIRMRNLNYSKLDNDGIIPTGTRVTGDDVLIGKVSPILDPERST 854

Query: 538  QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
            + +  Y ++D S S+R +E G VD V++T N +G +F KV+VRS RIPQ+GDKF+SRH Q
Sbjct: 855  KGNPVYLKKDSSTSMRRTEDGFVDSVIVT-NKEGYKFAKVKVRSCRIPQMGDKFASRHAQ 913

Query: 597  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
            KGTVG+T  QEDMP+T EGI PDII+NPHAIPSRMTIG LIEC+MGK  A  G+EGDATP
Sbjct: 914  KGTVGITLNQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLMGKTCALTGEEGDATP 973

Query: 657  FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
            F  VTVDNIS+ L +  YQ RGFE MYNG TG +L A I++GPTYYQRLKHMVDDKIH+R
Sbjct: 974  FNGVTVDNISEKLKEYNYQQRGFEVMYNGMTGHKLRAQIYIGPTYYQRLKHMVDDKIHAR 1033

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
             +GP+QILTRQP EGRSRDGGLRFGEMERDC+I+HGAS FLKERL D SD Y   +C+ C
Sbjct: 1034 AKGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDPYTCCICDLC 1093

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            GLIAI   + N  EC+GC N+T++  V IPYA KLL QELM M IAPR+ T+
Sbjct: 1094 GLIAIDTKRYN--ECKGCNNRTNLSLVEIPYAFKLLIQELMGMNIAPRIKTE 1143


>gi|46277259|gb|AAS86820.1| RNA polymerase II second largest subunit, partial [Trochodendron
           aralioides]
          Length = 547

 Score = 1096 bits (2835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/548 (94%), Positives = 537/548 (97%), Gaps = 1/548 (0%)

Query: 167 TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 226
           TPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCW
Sbjct: 1   TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGCW 60

Query: 227 VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 286
           VGIHR+PE LVKTLR+LRRRVDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLL
Sbjct: 61  VGIHRNPEFLVKTLRQLRRRVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLL 120

Query: 287 IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 346
           IKK+DI ALQQRESPE GGWHDLVAKG+IEY+DTEEEETTMISMTINDL+ A+++PEEAY
Sbjct: 121 IKKKDIQALQQRESPE-GGWHDLVAKGYIEYVDTEEEETTMISMTINDLITAKVNPEEAY 179

Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
           ++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY
Sbjct: 180 SETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 239

Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
           VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSL
Sbjct: 240 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSL 299

Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
           FFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK
Sbjct: 300 FFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 359

Query: 527 TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
           TTPI+QDE+QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQI
Sbjct: 360 TTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQI 419

Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
           GDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA
Sbjct: 420 GDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 479

Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK
Sbjct: 480 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 539

Query: 707 HMVDDKIH 714
           HMVDDKIH
Sbjct: 540 HMVDDKIH 547


>gi|389626335|ref|XP_003710821.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
            70-15]
 gi|351650350|gb|EHA58209.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
            70-15]
 gi|440465319|gb|ELQ34645.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae Y34]
 gi|440478473|gb|ELQ59304.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae P131]
          Length = 1276

 Score = 1093 bits (2828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/872 (60%), Positives = 657/872 (75%), Gaps = 45/872 (5%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPH+   + CET+KA++ GY++H++L CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 398  LPHISQAEGCETRKAFFLGYMVHKILQCALGRRDVDDRDHFGKKRLDLAGPLLAKLFRGI 457

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             RKLT D+   +++C+D G+D +L  ++K  T+T+GLKYSLATGNWG Q  AA + AGVS
Sbjct: 458  IRKLTNDMMGGLRRCIDAGRDFDLTASLKPNTLTNGLKYSLATGNWGDQKKAASSTAGVS 517

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 518  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 577

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM  ++VG+ A PI +FL   G +  EE  P+     +KIF+NG WVG+    E LV  +
Sbjct: 578  LMCMVSVGTPAEPIYDFLVARGMDVLEEYEPSNSSSTSKIFINGTWVGVANKIEELVDLV 637

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKKR 290
              LRR+  V+ EV ++ D+R  E RI++D GR  RPLF+V ++           L++ K 
Sbjct: 638  YDLRRKSRVDPEVSLIHDVREGEFRIFSDAGRVMRPLFVVNQKDDPRTGAQAGSLVLTKE 697

Query: 291  DIIALQQRE----SPEDGG---WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---- 339
             +  L   +    SP D G   W  L + G ++ +D E+EET MI M+ +DL + R    
Sbjct: 698  HVAKLHADKDNNLSPGDEGHYGWQGLKSDGVLDLMDAEQEETAMICMSPSDLDKFRALKF 757

Query: 340  ----LHPEEAYADT----------------YTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
                L   EA+                   YTHCEIHPS++LG+CASIIPFPDHNQSPRN
Sbjct: 758  GGATLDELEAFDKNDINRRLNTKINPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRN 817

Query: 380  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
             YQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 818  CYQSAMGKQAMGFFLTNYNRRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAI 877

Query: 440  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            ACYSGYNQEDSVIMNQS+IDRG FRSLFFRSY D EK++G  + E F +P R++T+ ++ 
Sbjct: 878  ACYSGYNQEDSVIMNQSTIDRGLFRSLFFRSYTDSEKRVGINMVEKFEKPFRADTLRLKQ 937

Query: 500  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETG 557
            G+YDKL+DDG+  PGTRVSGED+IIGKT PI  D  + GQ + ++T+RD S  LR +E+G
Sbjct: 938  GTYDKLEDDGIVAPGTRVSGEDIIIGKTAPIPADNQELGQRTVQHTKRDASTPLRSTESG 997

Query: 558  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            +VDQV++TTN DGL++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGIT
Sbjct: 998  IVDQVIVTTNQDGLKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTREGIT 1057

Query: 618  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
            PDII+NPHAIPSRMTI  LIEC++ KVA   G EGDATPFT+VTVD++S  L + GYQ R
Sbjct: 1058 PDIIINPHAIPSRMTIAHLIECLLSKVATLKGMEGDATPFTEVTVDSVSNLLREHGYQSR 1117

Query: 678  GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
            GFE +Y+GHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPV I+TRQP EGR+RDGG
Sbjct: 1118 GFEVLYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVNIMTRQPVEGRARDGG 1177

Query: 738  LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 796
            LRFGEMERDCMIAHGA+ FLKERLF+ SDA+R H+C  CGL+  IA+L + +FECR C+N
Sbjct: 1178 LRFGEMERDCMIAHGAASFLKERLFEVSDAFRAHICGICGLMTPIADLTRKTFECRPCRN 1237

Query: 797  KTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            KT I QVHIPYA KLLFQEL +M IA RM T+
Sbjct: 1238 KTKIAQVHIPYAAKLLFQELASMNIATRMFTE 1269


>gi|402077539|gb|EJT72888.1| hypothetical protein GGTG_09739 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1278

 Score = 1093 bits (2826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/872 (60%), Positives = 654/872 (75%), Gaps = 46/872 (5%)

Query: 2    LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
            LPHV   +  ET+KA++ GY++H++L CALGRR  DDRDH+G KRLDLAGPLL  LFR L
Sbjct: 399  LPHVSQEEGQETRKAFFLGYMVHKILQCALGRRDVDDRDHFGKKRLDLAGPLLAKLFRNL 458

Query: 62   FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
             R+++ D+  ++++C+D+ ++ +L  A++  T+++GLKYSLATGNWG Q  AA + AGVS
Sbjct: 459  VRRMSNDMMNHLKRCIDSSRNFDLTSALRPNTLSNGLKYSLATGNWGDQKKAASSTAGVS 518

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 519  QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 578

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM  ++VG+ A PI  FL   G E  EE  P+     +KIF+NG WVG+ R+ + L   +
Sbjct: 579  LMCMVSVGTPASPIEHFLVSRGMEVLEEFEPSDGMAVSKIFINGTWVGVSRNIDELADAV 638

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV----------EKQRLLIKKR 290
              LRR+  V+ EV ++ D+R  E RI +D GR  RPLF+V          +K  L++ K 
Sbjct: 639  ADLRRKNTVDAEVSLIHDVREGEFRILSDAGRVMRPLFVVNQKDDEMTGTKKSSLVLTKE 698

Query: 291  DIIALQ-----QRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDL-------- 335
             I  L      Q    ++G  GW  L + G I+ +D E+EET MI MT  DL        
Sbjct: 699  HIARLHEDKDNQLSQGDEGFYGWEGLKSDGVIDLMDAEQEETAMICMTPEDLDIFRYLKE 758

Query: 336  ----------------VQARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
                            +  RL  +      TYTHCEIHPS++LG+CASIIPFPDHNQSPR
Sbjct: 759  TGINLASEDDIITEHNINKRLRTKINPTTHTYTHCEIHPSMLLGICASIIPFPDHNQSPR 818

Query: 379  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
            NTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL  TR+ME+L FR+LPAG NAIVA
Sbjct: 819  NTYQSAMGKQAMGFFLTNYNKRMDTMANILYYPQKPLGITRSMEYLKFRELPAGQNAIVA 878

Query: 439  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
            IACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P R +T+ ++
Sbjct: 879  IACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDAEKRVGINLVEKFEKPYRQDTLRLK 938

Query: 499  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSET 556
             G+YDKL+DDG+  PGTRVSGED+IIGKT PI  D  + GQ + ++ +RD S  LR +E+
Sbjct: 939  QGTYDKLEDDGIVAPGTRVSGEDIIIGKTAPIQPDNQELGQRTVQHVKRDASTPLRSTES 998

Query: 557  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
            G+VDQV+LTTN DGL++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI
Sbjct: 999  GIVDQVILTTNQDGLKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTREGI 1058

Query: 617  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
            TPDII+NPHAIPSRMTI  LIEC++ KVA   G EGDATPFT+VTVD++SK L +  YQ 
Sbjct: 1059 TPDIIINPHAIPSRMTIAHLIECLLSKVATIKGFEGDATPFTEVTVDSVSKLLREYDYQS 1118

Query: 677  RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 736
            RGFE +Y+GHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGP+QI+TRQP EGR+RDG
Sbjct: 1119 RGFEVLYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDG 1178

Query: 737  GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCK 795
            GLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IA+L K +FECR CK
Sbjct: 1179 GLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIADLTKGTFECRPCK 1238

Query: 796  NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            NKT I QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1239 NKTKIAQVHIPYAAKLLFQELAAMNIATRMFT 1270


>gi|3002939|gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
          Length = 554

 Score = 1090 bits (2820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/556 (92%), Positives = 539/556 (96%), Gaps = 2/556 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQAT
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHR+P++LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVE Q+LLIKKRDI ALQQRE+ E+G WH LV+KGFIEY+DTEEEETTMISMTINDLVQA
Sbjct: 121 IVENQKLLIKKRDIQALQQRETQEEG-WHFLVSKGFIEYVDTEEEETTMISMTINDLVQA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R   ++AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180 R-RSKDAYSTTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 238

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 239 LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 298

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 299 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVS 358

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKT+PI+QDE+QGQASRY RRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+
Sbjct: 359 GEDVIIGKTSPIAQDESQGQASRYNRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 418

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVN HAIPSRMTIGQLIE
Sbjct: 419 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNQHAIPSRMTIGQLIE 478

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLG
Sbjct: 479 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLG 538

Query: 699 PTYYQRLKHMVDDKIH 714
           PTYYQRLKHMVDDKIH
Sbjct: 539 PTYYQRLKHMVDDKIH 554


>gi|385301281|gb|EIF45483.1| dna-directed rna polymerase [Dekkera bruxellensis AWRI1499]
          Length = 1155

 Score = 1089 bits (2817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/825 (63%), Positives = 636/825 (77%), Gaps = 43/825 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+      ET KAY+ GYI++RLLLCAL RR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 323  FLPHISQDSGYETNKAYFLGYIVNRLLLCALERREPDDRDHFGKKRLDLAGPLLANLFRI 382

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKL++D+  Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 383  LFRKLSKDIYRYMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGV 442

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 443  SQVLNRYTYASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 502

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  I+VG+++ PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV T
Sbjct: 503  SLMAGISVGTSSEPISYLLEEWGLEPLSDYDPQEHKNATRVFLNGNWVGTHRDPGMLVDT 562

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            +R+LRR   ++ EV +VRDIR +E +I+TD GR  RPLFIV+       K  L I K D+
Sbjct: 563  MRQLRRSGTISPEVSLVRDIREREFKIFTDAGRVYRPLFIVDNDPDSPRKGNLKITKDDV 622

Query: 293  IALQQRE----SPE-----DG----------GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
              ++ RE    +PE     DG          GW  LV  G +EY+D EEEETT+I+M+  
Sbjct: 623  RKIRDREVEEIAPEEDVDEDGNPAEPIRRVYGWDSLVTNGMVEYLDAEEEETTLIAMSPE 682

Query: 334  DLV---------QARLHPEEAY-----ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
            DL+         +  L P +       + ++THCEIHP++ILGV ASIIPFPDHNQSPRN
Sbjct: 683  DLLPMSKQDQRREVELDPAKRIKTHINSHSFTHCEIHPAMILGVAASIIPFPDHNQSPRN 742

Query: 380  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
            TYQSAMGKQAMG+Y+TNY  RMDT++ +LYYPQKPL  T++ME L FR+LPAG N IVAI
Sbjct: 743  TYQSAMGKQAMGVYLTNYNVRMDTMSNILYYPQKPLAKTQSMEFLKFRELPAGQNCIVAI 802

Query: 440  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            ACYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+E++ G  + E+F +P+RSNT+G + 
Sbjct: 803  ACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDQERRNGISIVEEFEKPNRSNTLGFKV 862

Query: 500  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
            G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 863  GTYEKLDDDGLVAPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRSAESG 922

Query: 558  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            +VDQV+LTTNA+GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+GMTY  EDMP+T EGI 
Sbjct: 923  IVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGMTYRHEDMPFTAEGIV 982

Query: 618  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
            PDII+NPH IPSRMT+  L+EC++ KVAA  G EGDATPFTD+TVD +SK L + GYQ R
Sbjct: 983  PDIIINPHCIPSRMTVAHLVECLLSKVAALRGYEGDATPFTDLTVDAVSKLLRENGYQSR 1042

Query: 678  GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
            GFE MYNGHTG++L A I+LGPTYYQRL+HMVDDKIH+R RGP Q LTRQP EGR+RDGG
Sbjct: 1043 GFEVMYNGHTGKKLMAQIYLGPTYYQRLRHMVDDKIHARARGPYQNLTRQPMEGRARDGG 1102

Query: 738  LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIA 782
            LRFGEMERDCMIAHG + FLKERL D SDA+RVHVC  CGL+++ 
Sbjct: 1103 LRFGEMERDCMIAHGVAGFLKERLMDSSDAFRVHVCGICGLMSVV 1147


>gi|46277273|gb|AAS86827.1| RNA polymerase II second largest subunit, partial [Antirrhinum
           majus]
          Length = 573

 Score = 1087 bits (2812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/575 (88%), Positives = 550/575 (95%), Gaps = 2/575 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAA PILEFL+EW TENFEEISPAVIPQATKIFVNG 
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFLDEWSTENFEEISPAVIPQATKIFVNGN 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           W+GIHR+PE+LV+TLR+LRR+VDVNTEVG++RDI LKELR+YTDYGRCSRPLFIV+KQRL
Sbjct: 61  WIGIHRNPELLVRTLRQLRRQVDVNTEVGIIRDIHLKELRLYTDYGRCSRPLFIVDKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           +IKK+DI+ALQQRES ++ GWHDLV  G +EY+DTEEEETTMISMTINDL+ +R +P+ A
Sbjct: 121 VIKKKDILALQQRESADEYGWHDLVRNGSVEYVDTEEEETTMISMTINDLINSRHNPDAA 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++TYTHCEIHPSL+LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 181 YSETYTHCEIHPSLVLGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFG P+R NTMGMRHGSYDKL+DDG APPGTRVSG+DVIIG
Sbjct: 301 LFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLEDDGFAPPGTRVSGDDVIIG 360

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTP + DE   Q  R+TR+DHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQ
Sbjct: 361 KTTPFTPDE--NQNIRFTRQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRSVRIPQ 418

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGT+GMTYTQ+DMPW++EGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 419 IGDKFSSRHGQKGTIGMTYTQDDMPWSIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 478

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR LT+MIFLGPTYYQRL
Sbjct: 479 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRPLTSMIFLGPTYYQRL 538

Query: 706 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 539 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 573


>gi|2736117|gb|AAB94059.1| RPB140 [Hordeum vulgare]
          Length = 555

 Score = 1087 bits (2811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/556 (92%), Positives = 539/556 (96%), Gaps = 1/556 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEWGTENFEEISPAVIPQA 
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAA 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHR+P++LVKTLRRLRR++DVNTEVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVE QRLLIKK+ I ALQQRE+P D GWHDLVAKGFIEYIDTEEEETTMISMTI DL  +
Sbjct: 121 IVENQRLLIKKKHIRALQQRETP-DEGWHDLVAKGFIEYIDTEEEETTMISMTIRDLETS 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R +P EAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180 RHNPGEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVLYYPQKPLVTTRAMEHL FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTLAYVLYYPQKPLVTTRAMEHLLFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300 DRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKT+PI QD+AQGQA+RY++RDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+
Sbjct: 360 GEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAHMGKEGDATPFTDVTVD+ISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLG
Sbjct: 480 CIMGKVAAHMGKEGDATPFTDVTVDHISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLG 539

Query: 699 PTYYQRLKHMVDDKIH 714
           PTYYQRLKHMVDDKIH
Sbjct: 540 PTYYQRLKHMVDDKIH 555


>gi|46277279|gb|AAS86830.1| RPB140, partial [Liquidambar acalycina]
          Length = 540

 Score = 1085 bits (2807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/540 (96%), Positives = 537/540 (99%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE+QRL
Sbjct: 61  WVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVERQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+DI ALQQRE+P+DGGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 121 LIKKKDIQALQQRETPDDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEA 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181 YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFGRP+R++TMGMRHGSY+KLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301 LFFRSYRDEEKKMGTLVKEDFGRPNRADTMGMRHGSYEKLDDDGLAPPGTRVSGEDVIIG 360

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTPI+QDE+QGQASRYTRRDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361 KTTPIAQDESQGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 481 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 540


>gi|2736119|gb|AAB94060.1| RPB140 [Spinacia oleracea]
          Length = 556

 Score = 1085 bits (2807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/556 (94%), Positives = 545/556 (98%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW TENFEEISPAVIPQ+T
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAVIPQST 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHRDPE+LVKTLR+LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRDPELLVKTLRQLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVEKQ LLIKK+DI ALQQRE+PEDGGWHDLVAKG+IEYIDTE EETTMISMTINDLV A
Sbjct: 121 IVEKQSLLIKKKDIRALQQRENPEDGGWHDLVAKGYIEYIDTEGEETTMISMTINDLVTA 180

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R++PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 181 RINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 240

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
           FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+I
Sbjct: 241 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAI 300

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRSLFFRSYRDEEKKMGTL KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR +
Sbjct: 301 DRGFFRSLFFRSYRDEEKKMGTLDKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCA 360

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKTTP++ DEA G ++RY+RRDHSISLRHSETGMVDQVL TTNADGLRFVKVRV
Sbjct: 361 GEDVIIGKTTPLAPDEATGPSARYSRRDHSISLRHSETGMVDQVLPTTNADGLRFVKVRV 420

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RSVR+PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 421 RSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 480

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAH+GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLG
Sbjct: 481 CIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLG 540

Query: 699 PTYYQRLKHMVDDKIH 714
           PTYYQRLKHMVDDKIH
Sbjct: 541 PTYYQRLKHMVDDKIH 556


>gi|40641904|emb|CAD88602.1| RNA polymerase II second largest subunit [Alangium platanifolium]
          Length = 540

 Score = 1085 bits (2806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/540 (96%), Positives = 536/540 (99%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61  WVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+DI  LQQRE+PE+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV AR++PEEA
Sbjct: 121 LIKKKDIQMLQQRETPEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARINPEEA 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181 YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301 LFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 360

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTPI+QD++QGQASRY+RRDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361 KTTPIAQDDSQGQASRYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT+MIFLGPTYYQRL
Sbjct: 481 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRL 540


>gi|2736121|gb|AAB94061.1| RPB140 [Magnolia virginiana]
          Length = 555

 Score = 1084 bits (2804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/556 (92%), Positives = 537/556 (96%), Gaps = 1/556 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEIS AVIPQAT
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISAAVIPQAT 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHR+P++LVKTLR LRRR+DVNTEVGV+RDIRLKELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRNPDLLVKTLRLLRRRIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IV++QRLLIKK+ I ALQQRE+ E+G WHDLVAKGFIEY+D EEEETTMISMTI+DL+ A
Sbjct: 121 IVDQQRLLIKKKHIHALQQRETQEEG-WHDLVAKGFIEYVDPEEEETTMISMTISDLISA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R +PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180 RHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRESTMGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKT PI+QD+ QGQ +RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+
Sbjct: 360 GEDVIIGKTIPIAQDDVQGQVTRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTPEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLG
Sbjct: 480 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLG 539

Query: 699 PTYYQRLKHMVDDKIH 714
           PTYYQRLKHMVDDKIH
Sbjct: 540 PTYYQRLKHMVDDKIH 555


>gi|56694374|gb|AAW22927.1| RNA polymerase II second largest subunit [Dianthus sp. UWG]
          Length = 540

 Score = 1084 bits (2803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/540 (95%), Positives = 531/540 (98%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW TENFEEISPAVIPQATKIFVNG 
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAVIPQATKIFVNGG 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHRDP++LVKTLR LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61  WVGIHRDPDLLVKTLRELRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+DI ALQQRE+PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+PEE+
Sbjct: 121 LIKKKDIRALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEES 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181 YSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 360

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTP+S +EAQG A+RY+R+DHSISLRHSE+G+VDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361 KTTPLSPEEAQGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AH+GKEGDATPFTDVTVDNISKAL KCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 481 AHVGKEGDATPFTDVTVDNISKALQKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 540


>gi|46277277|gb|AAS86829.1| RNA polymerase II second largest subunit, partial [Astilbe
           chinensis]
          Length = 540

 Score = 1082 bits (2799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/540 (96%), Positives = 535/540 (99%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP+ATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPEATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61  WVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+DI ALQQRE+PEDGGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 121 LIKKKDIQALQQRETPEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEA 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++ YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181 YSEYYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFGRP+R++TM MRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301 LFFRSYRDEEKKMGTLVKEDFGRPNRNDTMNMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 360

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KT+PI+QDE+QGQASRYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361 KTSPIAQDESQGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 481 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 540


>gi|68300857|gb|AAY89365.1| RNA polymerase IV second largest subunit precursor [Chlamydomonas
            reinhardtii]
          Length = 1607

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/749 (67%), Positives = 604/749 (80%), Gaps = 3/749 (0%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+GT +F ET+K Y+ GY++HRL+L ALGRR EDDRDHY NKRLDL GPL+ GLFR+
Sbjct: 341  LLPHLGTEEFMETRKGYFVGYMVHRLMLVALGRRPEDDRDHYANKRLDLGGPLMAGLFRL 400

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LFRKL +++R   Q+ VD GK++N+  AI  K IT GLKYSLATGNWG+    G RAGVS
Sbjct: 401  LFRKLCKELRMQAQRMVDAGKEINVISAINDKVITRGLKYSLATGNWGEQGKQGIRAGVS 460

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVL RLTYASTLSHLRR+NSPIGREGKLAKPRQLHNS WG+ CPAETPEGQA GLVKN+A
Sbjct: 461  QVLARLTYASTLSHLRRVNSPIGREGKLAKPRQLHNSLWGIFCPAETPEGQAVGLVKNMA 520

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YITVG+ + P++  LEE+ TE  +E++PA I  +TK+F+NG W+GI RDP  L+K L
Sbjct: 521  LMCYITVGTPSLPVVAHLEEFNTEALDEVTPADIAASTKVFINGVWLGIQRDPTALIKNL 580

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
            R +RR+V  +TEV ++ D  LKELRI+TDYGR SRPL+I E  RLL+ K  I  L     
Sbjct: 581  RAMRRQVAFSTEVAIIYDGPLKELRIFTDYGRASRPLYICEDNRLLVSKHHIRRLISPLP 640

Query: 301  PEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
             ED   W  LV  G +EYID EEEETTMI+MTI DL  AR     A   TYTHCEIHP++
Sbjct: 641  DEDEYAWPQLVQDGLVEYIDAEEEETTMIAMTIADLRNAR-EAGAATGTTYTHCEIHPAM 699

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TNYQ RMDT  +VLYYPQKPLV TR
Sbjct: 700  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTR 759

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            AM++L FR+LPAGINAIVAI CYSGYNQEDS+++N SSIDRGF RS+ +R+Y++EEKK G
Sbjct: 760  AMDYLMFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSILYRAYKEEEKKAG 819

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
            ++ +E+   PD S T  M+HG+YDKLD DGL PPGTRVSGED+I GKT  +  D+  G  
Sbjct: 820  SMAREEIEAPDPSVTSKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLP-DDPTGAV 878

Query: 540  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
             R+T++D S++LR  E G++DQV+LTTN +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT
Sbjct: 879  QRFTKKDASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGT 938

Query: 600  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
             G+TYT EDMP+T EGI PDIIVNPHAIPSRMTIG L+E +M KVA+ MG EGDATPFT 
Sbjct: 939  CGITYTMEDMPFTAEGIVPDIIVNPHAIPSRMTIGHLVEALMSKVASLMGSEGDATPFTK 998

Query: 660  VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 719
            VTVDN+S+ LH  GYQ RG+E MY+GHTGR+L A IFL PTYYQRLKHMVD KIHSRGRG
Sbjct: 999  VTVDNVSQMLHDLGYQRRGWEVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRG 1058

Query: 720  PVQILTRQPAEGRSRDGGLRFGEMERDCM 748
            PVQ+LTRQPAEGR+RDGGLRFGEMERDC+
Sbjct: 1059 PVQVLTRQPAEGRARDGGLRFGEMERDCL 1087



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 69/85 (81%)

Query: 746  DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 805
            +C+I+HGA+ FLKERLFDQSDAYR+HVCE  GLIA+ANLKK  F     K+ ++I QV+I
Sbjct: 1516 NCIISHGAAAFLKERLFDQSDAYRIHVCERSGLIAVANLKKQQFTSTIYKDGSNIYQVYI 1575

Query: 806  PYACKLLFQELMAMAIAPRMLTKED 830
            PYACKLLFQELMAM IAPRM  + D
Sbjct: 1576 PYACKLLFQELMAMCIAPRMQFERD 1600


>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Strongylocentrotus purpuratus]
          Length = 1142

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/833 (63%), Positives = 625/833 (75%), Gaps = 46/833 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  DFCETKKAY+ GY +HRLLL ++GRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 347  MLPHVGVSDFCETKKAYFLGYCVHRLLLASIGRREVDDRDHYGNKRLDLAGPLLAFLFRA 406

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ L ++VR Y QK +D GKD N++ AIK + IT GLKYSLATGNWG Q  A   RAGV
Sbjct: 407  LFKNLLKEVRMYAQKFIDKGKDFNMELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGV 466

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQV + L       H                                  +G A GLVKNL
Sbjct: 467  SQVRHILHSFIVYYH----------------------------------KGHAVGLVKNL 492

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I +ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 493  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAINEATKIFVNGCWVGIHRDPEQLMNT 552

Query: 240  LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            L++LRR++D+  +EV +VRDIR +E+RI+TD GR  RPL IVE Q+LL+KKR +  L++R
Sbjct: 553  LKKLRRQMDIIVSEVSMVRDIREREIRIFTDAGRICRPLLIVENQKLLLKKRHVSMLKER 612

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E   +  W DLVA G +EYIDT EEET M++MT +DL +  +     Y  TYTHCEIHPS
Sbjct: 613  EY-NNYSWQDLVASGVVEYIDTMEEETVMLAMTPDDLQEKGM----GYCSTYTHCEIHPS 667

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYPQKPL TT
Sbjct: 668  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLTTT 727

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME+L FR+LPAGIN++VAIA Y+GYNQEDSVI+N S+IDRGFFRS+F+RSY+D E K 
Sbjct: 728  RSMEYLRFRELPAGINSVVAIASYTGYNQEDSVILNASAIDRGFFRSVFYRSYKDAESK- 786

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE-DVIIGKTTPISQ--DEA 535
                 E F +P R    GMR+  YDKL++DG+ PPG+RVSG  D  I     + +     
Sbjct: 787  AVDKDEMFEKPSRETCQGMRNAVYDKLEEDGIIPPGSRVSGNRDFXICVNXYVXRPFKAL 846

Query: 536  QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
            +G + R+T+RD S  +R +ETG++DQV+++ N DG +F K++VRSVR PQIGDKF+SRHG
Sbjct: 847  EGTSRRFTKRDCSTFMRSTETGIIDQVMVSINQDGYKFCKIKVRSVRTPQIGDKFASRHG 906

Query: 596  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
            QKGT G+ Y  EDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV++  G+ GDAT
Sbjct: 907  QKGTCGIKYRVEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSSKGEIGDAT 966

Query: 656  PFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
            PF D V V  IS  LH+ GY  RG E ++ G TGR++   +FLGPTYYQRLKHMVDDKIH
Sbjct: 967  PFNDSVNVQKISNLLHEYGYHQRGNEVLFCGFTGRKIGTQVFLGPTYYQRLKHMVDDKIH 1026

Query: 715  SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 774
            SR RGPVQIL RQP EGRSRDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVHVC 
Sbjct: 1027 SRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHVCN 1086

Query: 775  HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
             CGLIAIANL+ N+FECRGCKNKT I QV +PYACKLLFQELM+M IAPRM+ 
Sbjct: 1087 FCGLIAIANLRNNTFECRGCKNKTQISQVRLPYACKLLFQELMSMCIAPRMMV 1139


>gi|116201245|ref|XP_001226434.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
 gi|88177025|gb|EAQ84493.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
          Length = 1182

 Score = 1079 bits (2791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/816 (62%), Positives = 634/816 (77%), Gaps = 37/816 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   + CET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDL GPLL  LFR 
Sbjct: 344  MLPHISQTEGCETRKAFFLGYMVHRLLQCALGRRDPDDRDHFGKKRLDLPGPLLAKLFRN 403

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            + R++T+D+ +Y+++C+D  K+ +L   IK  T+T+GLKYSLATGNWG Q  AA + AGV
Sbjct: 404  VIRRMTQDLMSYMKRCIDTNKNFSLPLGIKHSTLTNGLKYSLATGNWGDQKKAASSTAGV 463

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 464  SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 523

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VG+ A PI+EF+   G E  EE  P   P ATK+FVNG WVG+H+DP+ LV  
Sbjct: 524  SLMCYVSVGTPADPIVEFMIARGMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTL 583

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKK 289
            ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF VE++           L++ K
Sbjct: 584  VQGLRRKNVISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEPNGESGAEMGALILNK 643

Query: 290  RDIIALQQ-----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ------A 338
              I  L+      +  P+  GW  L+  G IEY+D EEEET MI MT  DL Q       
Sbjct: 644  DHIGRLKMDAELGKYHPDYWGWQGLLKSGAIEYLDAEEEETVMICMTPQDLDQFRARKMG 703

Query: 339  RLHPEEA-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
            R+ P+ +                 YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAM
Sbjct: 704  RIEPDNSGLGNNRIKTKPNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAM 763

Query: 386  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
            GKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGY
Sbjct: 764  GKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGY 823

Query: 446  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
            NQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P+RS+T+ ++H +YDKL
Sbjct: 824  NQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPNRSDTLRLKHSTYDKL 883

Query: 506  DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVL 563
            D DG+  PG RVSGED+IIGKT PI+ D A+ GQ S ++ +RD S  LR +E+G++DQV+
Sbjct: 884  DADGIVAPGIRVSGEDIIIGKTCPINPDNAELGQRSNQHVKRDASTPLRSTESGIIDQVV 943

Query: 564  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
            +TTN DG+R+VKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+N
Sbjct: 944  MTTNQDGMRYVKVRVRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIIN 1003

Query: 624  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
            PHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S  L + GYQ RGFE MY
Sbjct: 1004 PHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVTVDSVSDLLREHGYQSRGFEIMY 1063

Query: 684  NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 743
            +GHTGR+L + IF GPTYYQRL+HMVDDKIH+R RGP+QI+TRQP EGR+RDGGLRFGEM
Sbjct: 1064 HGHTGRKLRSQIFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEM 1123

Query: 744  ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
            ERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+
Sbjct: 1124 ERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLM 1159


>gi|325092558|gb|EGC45868.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus H88]
          Length = 1307

 Score = 1079 bits (2790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/821 (63%), Positives = 633/821 (77%), Gaps = 41/821 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 484  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRI 543

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++T+D+  YVQ+CV+  + + L   +KA T++SGLKY+LATGNWG Q  AA ++AGV
Sbjct: 544  LFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSSGLKYALATGNWGEQKKAASSKAGV 603

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 604  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 663

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 664  ALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHLVST 723

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L++ K  I
Sbjct: 724  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSKEHI 783

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI MT  DL     +
Sbjct: 784  HKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLETSKQL 843

Query: 337  QARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            QA    PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 844  QAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 903

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 904  QSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 963

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 964  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGT 1023

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 1024 YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKIDVSTPLRSTESGIV 1083

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 1084 DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPD 1143

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + GYQ RGF
Sbjct: 1144 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISSLLREHGYQSRGF 1203

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNG+TGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1204 EVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1263

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+ 
Sbjct: 1264 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMT 1304


>gi|302668317|ref|XP_003025731.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
 gi|291189857|gb|EFE45120.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
          Length = 1205

 Score = 1079 bits (2790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/821 (62%), Positives = 634/821 (77%), Gaps = 41/821 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLVGT 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
              L+  +E P D           GW  LV  G IEY+D EEEET MI MT  DL  ++ +
Sbjct: 682  HKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPEDLEASKQY 741

Query: 342  ------PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 802  QSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+TPD
Sbjct: 982  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGF
Sbjct: 1042 LIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+CE CGL+ 
Sbjct: 1162 FGEMERDCMIAHGASSFLKERLFDVSDPFRVHICEICGLMT 1202


>gi|320031539|gb|EFW13500.1| DNA-dependent RNA polymerase II RPB140 [Coccidioides posadasii str.
            Silveira]
          Length = 1205

 Score = 1078 bits (2788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/820 (62%), Positives = 632/820 (77%), Gaps = 40/820 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 383  FLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 442

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+  + + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 443  LFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 502

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 503  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 562

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P +TKIFVNG WVG+HRDP  LV T
Sbjct: 563  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDPSHLVST 622

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 623  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLTKEHI 682

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI M+  DL      
Sbjct: 683  RKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVMSPEDLEVSKQY 742

Query: 337  QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
            QA   PEE  +D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 743  QAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 802

Query: 383  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
            SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 803  SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACY 862

Query: 443  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
            SGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+Y
Sbjct: 863  SGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTY 922

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMVD 560
            DK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+VD
Sbjct: 923  DKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTKLDVSTPLRSTESGIVD 982

Query: 561  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
            QVL++T+ + L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T+ QEDMP+T EGI PD+
Sbjct: 983  QVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTFRQEDMPFTREGIVPDL 1042

Query: 621  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
            I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGFE
Sbjct: 1043 IINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGFE 1102

Query: 681  TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
             MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 1103 VMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1162

Query: 741  GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            GEMERDCMIAHGAS FLKERLFD SD +R+H+C+ CGL+ 
Sbjct: 1163 GEMERDCMIAHGASAFLKERLFDVSDPFRIHICDICGLMT 1202


>gi|302507686|ref|XP_003015804.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
 gi|291179372|gb|EFE35159.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
          Length = 1205

 Score = 1078 bits (2788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/821 (62%), Positives = 634/821 (77%), Gaps = 41/821 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 382  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 441

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 442  LFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 501

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 502  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WVG+HRDP  LV T
Sbjct: 562  ALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLVGT 621

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 622  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVKEHI 681

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
              L+  +E P D           GW  LV  G IEY+D EEEET MI MT  DL  ++ +
Sbjct: 682  HKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPEDLEASKQY 741

Query: 342  ------PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 742  QAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 801

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 802  QSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 861

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 862  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGT 921

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 922  YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 981

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+TPD
Sbjct: 982  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPD 1041

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGF
Sbjct: 1042 LIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGF 1101

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1102 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1161

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+ 
Sbjct: 1162 FGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMT 1202


>gi|119177838|ref|XP_001240650.1| hypothetical protein CIMG_07813 [Coccidioides immitis RS]
          Length = 1152

 Score = 1078 bits (2787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/819 (63%), Positives = 632/819 (77%), Gaps = 40/819 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 330  FLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 389

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+  + + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 390  LFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 449

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 450  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 509

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YITVG+ + PI++F+ +   E  EE  P V P +TKIFVNG WVG+HRDP  LV T
Sbjct: 510  ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDPSHLVST 569

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 570  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLTKEHI 629

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI M+  DL      
Sbjct: 630  HKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVMSPEDLEVSKQY 689

Query: 337  QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
            QA   PEE  +D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 690  QAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 749

Query: 383  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
            SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 750  SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACY 809

Query: 443  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
            SGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+Y
Sbjct: 810  SGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTY 869

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMVD 560
            DK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+VD
Sbjct: 870  DKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTKLDVSTPLRSTESGIVD 929

Query: 561  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
            QVL++T+ + L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T+ QEDMP+T EGI PD+
Sbjct: 930  QVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTFRQEDMPFTREGIVPDL 989

Query: 621  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
            I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGFE
Sbjct: 990  IINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGFE 1049

Query: 681  TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
             MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 1050 VMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1109

Query: 741  GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
            GEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+
Sbjct: 1110 GEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLM 1148


>gi|401407224|ref|XP_003883061.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
 gi|325117477|emb|CBZ53029.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
          Length = 1260

 Score = 1077 bits (2786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/842 (61%), Positives = 643/842 (76%), Gaps = 19/842 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT   CE KKA++ GY++HRLLL  LGR  +DDRDH+G KRLD+AGPL+   F  
Sbjct: 422  VLPHVGTEAGCENKKAFFIGYMVHRLLLADLGRINQDDRDHFGKKRLDMAGPLIAASFGT 481

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIK-AKTITSGLKYSLATGNWGQANAAG-TRAG 118
            L+RK+ +DVR  +Q+ VD+GK  ++  AI+ A  IT GL+Y +ATGNWG+       R G
Sbjct: 482  LYRKMIKDVRRILQRQVDHGKSFDVAGAIRSASQITQGLQYQIATGNWGKDKEGKIVRTG 541

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            V+QVLNRLT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKN
Sbjct: 542  VAQVLNRLTFASALSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKN 601

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM  I+VGSA   + EFL EWG +  EE++P VI +  K+FVNG WVG   + ++L +
Sbjct: 602  LALMSDISVGSATNTVHEFLVEWGLDPLEEMTPDVIKERVKVFVNGSWVGCFDEADVLCQ 661

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQ 297
            TLR+LRRR D+++E  +VRD+  +E++I+TD GR  RPLF+V E  R L+ KR  +   Q
Sbjct: 662  TLRQLRRRCDISSETSIVRDLVNREVKIFTDAGRAMRPLFVVDEGTRDLVMKRGHLEELQ 721

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
            R   ++  W  L+ KG IE++D EEEET MI+M + D+       E+  A  YTHCEIHP
Sbjct: 722  RRGKDEKSWGYLMEKGIIEFVDCEEEETCMIAMFVEDI-----RSEKRLAFPYTHCEIHP 776

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            SLILGVCASIIPFPDHNQSPRN YQSAMGKQAMG+Y +++  RMDTLA++LYYPQKPLV 
Sbjct: 777  SLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTSSFNHRMDTLAHLLYYPQKPLVC 836

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            TRAME L FR+LPAGINAIVAI CYSGYNQEDS+IM+QSSIDRG FRS+F+R+Y  EE++
Sbjct: 837  TRAMEFLRFRELPAGINAIVAILCYSGYNQEDSLIMSQSSIDRGLFRSVFYRTYCSEERQ 896

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEA-- 535
             G+L+ E F  P   +  GM+ G Y KLD DGL  PG+RV G+DVIIGKT+PI  D+A  
Sbjct: 897  QGSLMVESFEPPSIEHVQGMKRGDYSKLDADGLVEPGSRVLGDDVIIGKTSPIFDDDAGM 956

Query: 536  -------QGQASRYTRR--DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
                    G  S + +R  D S+ LR SETG+VDQV+L+ N+ G RF KV+VRSVRIPQ 
Sbjct: 957  PGAAAGIAGVPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNSRGSRFTKVKVRSVRIPQT 1016

Query: 587  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
            GDKF+SRHGQKGT+G+TY  EDMP+  EGITPD+I+NPHA+PSRMTIG L+EC++GK AA
Sbjct: 1017 GDKFASRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVECLLGKTAA 1076

Query: 647  HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
              G EGDATPF    V +IS  LH  GY+  G E +Y+GHTGR L +++F GPTYYQRLK
Sbjct: 1077 IFGGEGDATPFNGYAVLDISNRLHSLGYERFGNERLYHGHTGRHLPSLVFFGPTYYQRLK 1136

Query: 707  HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
            HMVDDKIH+R RGPV +LTRQP EG+SR+GGLRFGEMERDCMI+HGA+H LKERLF+QSD
Sbjct: 1137 HMVDDKIHARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMISHGAAHMLKERLFEQSD 1196

Query: 767  AYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            AYRVHVC+ CGL+  A+L + +FEC+ C NK+ I Q+ IPYACKLL QELM M I PR++
Sbjct: 1197 AYRVHVCDICGLVCTADLSRGNFECKLCDNKSRISQICIPYACKLLLQELMTMCIYPRLV 1256

Query: 827  TK 828
             +
Sbjct: 1257 LQ 1258


>gi|225562623|gb|EEH10902.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus
            G186AR]
          Length = 1307

 Score = 1077 bits (2786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/821 (63%), Positives = 632/821 (76%), Gaps = 41/821 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 484  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRI 543

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  AA ++AGV
Sbjct: 544  LFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGV 603

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 604  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 663

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 664  ALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHLVST 723

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L++ K  I
Sbjct: 724  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSKEHI 783

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G +EY+D EEEET MI MT  DL     +
Sbjct: 784  HKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLETSKQL 843

Query: 337  QARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            QA    PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 844  QAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 903

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 904  QSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 963

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 964  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGT 1023

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 1024 YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKIDVSTPLRSTESGIV 1083

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 1084 DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPD 1143

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + GYQ RGF
Sbjct: 1144 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISSLLREHGYQSRGF 1203

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNG+TGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1204 EVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1263

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+ 
Sbjct: 1264 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMT 1304


>gi|40644039|emb|CAD92460.1| RNA polymerase II [Escallonia sp. Oxelman 2340]
          Length = 543

 Score = 1077 bits (2785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/543 (95%), Positives = 535/543 (98%)

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP ATKIFVNGCWVGIHR
Sbjct: 1   ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPPATKIFVNGCWVGIHR 60

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           DP+MLV+TLR+LRRR DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV KQRLLIKK D
Sbjct: 61  DPDMLVRTLRKLRRRXDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVNKQRLLIKKAD 120

Query: 292 IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
           I ALQQRE+PEDGGWHDLVAKG+IEYIDTEEEETTMISMTINDLV ARL+PEEAY++TYT
Sbjct: 121 IQALQQRETPEDGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYT 180

Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYP
Sbjct: 181 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYP 240

Query: 412 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
           QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSY
Sbjct: 241 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSY 300

Query: 472 RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
           RDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+
Sbjct: 301 RDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA 360

Query: 532 QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
           QD+AQGQASRY++RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361 QDDAQGQASRYSKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 592 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
           SRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 421 SRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 480

Query: 652 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
           GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD
Sbjct: 481 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 540

Query: 712 KIH 714
           KIH
Sbjct: 541 KIH 543


>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
            50818]
          Length = 1193

 Score = 1077 bits (2784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/851 (60%), Positives = 640/851 (75%), Gaps = 27/851 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+G G  CETKKA++ GY++HR L  AL RR  DDRDHYGNKRLD++GPL G LFR 
Sbjct: 341  LLPHIGLGPHCETKKAFFLGYMVHRTLQAALRRRQLDDRDHYGNKRLDMSGPLTGFLFRT 400

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR +T+++R+Y+QK ++  +++ L   + +K I SGL+YS ATGNWG QA A   RAGV
Sbjct: 401  LFRNVTKELRSYIQKKLNRSEEIKLSAGLNSKQIESGLRYSFATGNWGTQAKAFEARAGV 460

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPI R GK+AKPRQLHN+ WG +CPAETPEG A GLVKNL
Sbjct: 461  SQVLNRLTFASTLSHLRRLNSPIERTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNL 520

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEI-SPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            ALM  +TVG  A P+LE L   G E+ +++ S +VI   TKIFVNG WVGIH +PE +V+
Sbjct: 521  ALMASVTVGGDATPVLELLNSIGMESLDDLASRSVIRDTTKIFVNGAWVGIHMEPEEVVR 580

Query: 239  TLRRLRR-RVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-------------- 282
             L   RR + D + +EV + RDIR +E+ +Y+D GR +RPL IVEK              
Sbjct: 581  NLHLCRRTQADMIQSEVSIFRDIREREIHVYSDSGRLTRPLLIVEKPELDDTFHDGTQQQ 640

Query: 283  QRLLIKKRDIIALQ----QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
            Q L +KK+ +  LQ    Q        W DLV +G +EYID  EE+TTMI+MT +D   +
Sbjct: 641  QTLALKKQHLEKLQSAAMQNAFEATYSWSDLVREGLVEYIDVNEEDTTMIAMTPDDFEMS 700

Query: 339  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                ++ Y  TYTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY TN+ 
Sbjct: 701  --DEQDLYCTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYTTNFH 758

Query: 399  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
             R+DTLA+VLYYPQ+PLV TR+M++++F+ LPAGINAIVAI CY+GYNQEDSVIMN+ ++
Sbjct: 759  IRLDTLAHVLYYPQQPLVKTRSMDYMYFKDLPAGINAIVAIMCYTGYNQEDSVIMNKCAV 818

Query: 459  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
            DRG FRS+F+RSY   E+  G  V + F +P R    GMR+ +Y KL+DDGL  PGT V+
Sbjct: 819  DRGLFRSVFYRSYASSEENTGREVIK-FEKPSRETCAGMRNSNYGKLEDDGLIAPGTSVT 877

Query: 519  GEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
            G+D IIG+T   P + +    + +R+ + D S+ LR SE G++DQV++     G RFVK+
Sbjct: 878  GDDAIIGRTMELPPNAEARDSRLARFEKLDKSVFLRASENGIIDQVMVAMGPKGTRFVKI 937

Query: 577  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
            RVRS+R+PQIGDKF+SRHGQKGT GM Y+QEDMP+T +GITPDIIVNPHAIPSRMTIG L
Sbjct: 938  RVRSIRVPQIGDKFASRHGQKGTCGMQYSQEDMPFTCQGITPDIIVNPHAIPSRMTIGHL 997

Query: 637  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
            IEC++GKV    G  GDATPF +VTV+ ++ AL    +   G E +YNG TGR++ A +F
Sbjct: 998  IECLLGKVGCLEGAFGDATPFIEVTVNEVASALEAHNFHKYGNEVLYNGFTGRKMQAQVF 1057

Query: 697  LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
             GPTYYQRLKHMVDDKIH+R RGP+QILT+QP EGRSRDGGLRFGEMERDCMIAHG++ F
Sbjct: 1058 FGPTYYQRLKHMVDDKIHARARGPLQILTKQPVEGRSRDGGLRFGEMERDCMIAHGSAQF 1117

Query: 757  LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
            L+ERLF+ SD YR+HVC+ CGLI IANL KN  EC+ C N T + QV IPYACKLLFQEL
Sbjct: 1118 LRERLFEVSDPYRIHVCDICGLICIANLNKNELECKACSNTTRVSQVRIPYACKLLFQEL 1177

Query: 817  MAMAIAPRMLT 827
            M+M IAPR++T
Sbjct: 1178 MSMCIAPRIMT 1188


>gi|164428317|ref|XP_957106.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
           crassa OR74A]
 gi|157072100|gb|EAA27870.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
           crassa OR74A]
          Length = 1005

 Score = 1075 bits (2779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/818 (62%), Positives = 633/818 (77%), Gaps = 39/818 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   + CET+KA++ GY++H+LL C LGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 177 LLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRG 236

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           + R+LT+D+  Y+++CVD  K  +L   IKA T+T+GLKYSLATGNWG Q  A  + AGV
Sbjct: 237 IVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGV 296

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 297 SQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 356

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM +++VG+ A PI+EF+     E  EE  P   P ATK+FVNG WVG+H+DP+ LV  
Sbjct: 357 SLMCFVSVGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTL 416

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKK 289
           ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF+VE++          +L++ K
Sbjct: 417 VQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTK 476

Query: 290 RDIIALQQRES----PED-GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP-- 342
             I  L+Q +      ED  GW  L+  G IEY+D EEEET MI MT  DL   R H   
Sbjct: 477 EHIRRLEQDKELGKYHEDYFGWQGLLESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFK 536

Query: 343 ----EEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
               E+  A+                YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQS
Sbjct: 537 GREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQS 596

Query: 384 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
           AMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYS
Sbjct: 597 AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYS 656

Query: 444 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
           GYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +PDRSNT+  +HG+YD
Sbjct: 657 GYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYD 716

Query: 504 KLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQ 561
           KL++DG+  PG RV+G+D+IIGKT+PI+ D  + GQ  +++ +RD S  LR +E+G+VD 
Sbjct: 717 KLENDGIIAPGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDS 776

Query: 562 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
           V  TTN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII
Sbjct: 777 VAFTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDII 836

Query: 622 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
           +NPHAIPSRMTI  LIEC++ KV A  G EGDATPFTDVTVD++S  L + GYQ RGFE 
Sbjct: 837 INPHAIPSRMTIAHLIECLLSKVGALKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEI 896

Query: 682 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 741
           MY+GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFG
Sbjct: 897 MYHGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFG 956

Query: 742 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
           EMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+
Sbjct: 957 EMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLM 994


>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
            Muguga]
 gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
          Length = 1190

 Score = 1074 bits (2777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/834 (61%), Positives = 631/834 (75%), Gaps = 14/834 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHVGT    E+KK +Y GY+IHRLLL  LGR  EDDR+H+G KRLDLAG L+   F  
Sbjct: 365  FLPHVGTEVGSESKKCFYLGYMIHRLLLNQLGRINEDDREHFGKKRLDLAGSLMASSFGT 424

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA-KTITSGLKYSLATGNWGQ-ANAAGTRAG 118
            LFRKL +DV  +++  +D+G+  ++  AIK+   IT GL+Y L TGNWG+  +    R G
Sbjct: 425  LFRKLAKDVERFLKNQIDSGRSFDVAGAIKSCSQITQGLQYQLLTGNWGRDKDGNVVRTG 484

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            VSQVLNRLT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKN
Sbjct: 485  VSQVLNRLTFASYLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKN 544

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM YI+VGS +  IL+FL E+G ++ +EISP +I    KIF+NG WVG+   P+ LV 
Sbjct: 545  LALMCYISVGSLSSTILDFLLEFGMDSLDEISPILIKDRVKIFLNGTWVGVFNQPDSLVN 604

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
             L  LRR+ ++++E  +VRDI   E++I+TD GR  RPL+IVE  RLLI K+    ++ R
Sbjct: 605  VLLELRRKGNISSETSIVRDIMSNEIKIFTDAGRSMRPLYIVENNRLLITKKHADMIENR 664

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +      W  L+  G +EYID EEEE  MI+M  +DLV         Y ++YTHCEIHPS
Sbjct: 665  QLT----WSGLLETGVVEYIDCEEEEICMIAMFPDDLVN-----NNNYCNSYTHCEIHPS 715

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPD NQSPRNTYQSAMGKQAMG+Y TNY  RMDTL++VLYYPQKPLV T
Sbjct: 716  MILGVCASIIPFPDQNQSPRNTYQSAMGKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCT 775

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME L FR+LPAGIN+IVAI CY+GYNQEDS+IMNQSSIDRG FRS+F R+Y  EEK +
Sbjct: 776  RSMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYL 835

Query: 479  GTLVKEDFGRPDRS-NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
            G+ V E F +P  S N + ++ G Y KLD+DGL  PG+RV G+D+IIG+++P+  D    
Sbjct: 836  GSTVIESFTKPTASGNFLNLKRGDYSKLDNDGLVEPGSRVLGDDIIIGRSSPVEADPNNP 895

Query: 538  Q--ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
            Q  +    R D S  LR +E G+VD VLLT N  G +F KV+VRS+R+PQIGDKF+SRHG
Sbjct: 896  QYTSEMNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRSIRVPQIGDKFASRHG 955

Query: 596  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
            QKGT+GMT+  ED+P+T +GI PDII+NPHA+PSRMTIG LIEC++GKV + +G EGDAT
Sbjct: 956  QKGTIGMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGSLVGMEGDAT 1015

Query: 656  PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            PF+ +T+D IS  L KC Y   G E  +NG TG  + + IF+GPTYYQRLKHMV+DKIH+
Sbjct: 1016 PFSKMTLDQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHA 1075

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGPV +LTRQP EGRSR+GGLRFGEMERDCMI+HGA+  LKERLFDQSDAYRVHVC  
Sbjct: 1076 RARGPVTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNF 1135

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            CGL+++ANL  +SF+C  C NKT I QV IPYACKLL QELMAMAI P+++  E
Sbjct: 1136 CGLLSVANLNNSSFQCTACDNKTQISQVTIPYACKLLLQELMAMAIYPKLILTE 1189


>gi|40643996|emb|CAD91515.1| RNA polymerase II second largest subunit [Hedera helix]
          Length = 541

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/541 (95%), Positives = 533/541 (98%), Gaps = 1/541 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVY+TVGSAAYPILEFLEEWGTENFEEISPAVI QATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYVTVGSAAYPILEFLEEWGTENFEEISPAVITQATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ QRL
Sbjct: 61  WVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVKNQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LI+K+DI ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL+ AR++PEEA
Sbjct: 121 LIRKKDIQALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLLSARVNPEEA 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLA
Sbjct: 181 YSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           +FFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301 IFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 360

Query: 526 KTTPISQDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           KTTPI+QD+AQGQ ASRYTRRDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRS RIP
Sbjct: 361 KTTPIAQDDAQGQAASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSXRIP 420

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
            IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 421 XIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 480

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           AAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR
Sbjct: 481 AAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 540

Query: 705 L 705
           L
Sbjct: 541 L 541


>gi|237831495|ref|XP_002365045.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
            gondii ME49]
 gi|211962709|gb|EEA97904.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
            gondii ME49]
 gi|221487105|gb|EEE25351.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
            GT1]
 gi|221506791|gb|EEE32408.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
            VEG]
          Length = 1259

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/843 (61%), Positives = 639/843 (75%), Gaps = 20/843 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT   CE KKA+Y GY++HRLLL  LGR  +DDRDH+G KRLD+AGPL+   F  
Sbjct: 420  VLPHVGTEVGCENKKAFYIGYMVHRLLLADLGRINQDDRDHFGKKRLDMAGPLIAASFGT 479

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIK-AKTITSGLKYSLATGNWGQANAAG-TRAG 118
            L+RK+ +DVR  +Q+ VD+GK  ++  AI+ A  IT GL+Y +ATGNWG+       R G
Sbjct: 480  LYRKMIKDVRRILQRQVDHGKSFDVAGAIRSASQITQGLQYQIATGNWGKDKEGKIVRTG 539

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            V+QVLNRLT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKN
Sbjct: 540  VAQVLNRLTFASALSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKN 599

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM  I+VGSA   + EFL EWG +  EE++P VI +  K+FVNG WVG   + ++L +
Sbjct: 600  LALMSDISVGSATNTVHEFLVEWGLDPLEEMTPDVIKERVKVFVNGSWVGCFDEADVLCQ 659

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQ 297
            TLR+LRRR D+++E  +VRD+  +E++I+TD GR  RPLF+V E  R L+ KR  +   Q
Sbjct: 660  TLRQLRRRCDISSETSIVRDLVNREVKIFTDAGRAMRPLFVVDEGTRDLVMKRCHLEELQ 719

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
            R   ++  W  L+ KG IE++D EEEET MI+M + D+       E+  A  YTHCEIHP
Sbjct: 720  RRGKDEKSWGYLMEKGIIEFVDCEEEETCMIAMFVEDI-----RSEKRQAFPYTHCEIHP 774

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            SLILGVCASIIPFPDHNQSPRN YQSAMGKQAMG+Y +++  RMDTLA++LYYPQKPLV 
Sbjct: 775  SLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTSSFNHRMDTLAHLLYYPQKPLVC 834

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            TRAME L FR+LPAGINAIVAI CYSGYNQEDS+IM+QSSIDRG FRS+F+R+Y  EE++
Sbjct: 835  TRAMEFLRFRELPAGINAIVAILCYSGYNQEDSLIMSQSSIDRGLFRSVFYRTYCSEERQ 894

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
             G+L+ E F  P   +  GM+ G Y KLD DGL  PG+RV G+DVIIGKT+P+  D+   
Sbjct: 895  QGSLMVESFEPPSIEHVQGMKRGDYSKLDADGLVEPGSRVLGDDVIIGKTSPLFDDDTGM 954

Query: 538  QASRYT------------RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
                              +RD S+ LR SETG+VDQV+L+ N  G RF KV+VRSVRIPQ
Sbjct: 955  PGGAGAGPGGVPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNNRGSRFTKVKVRSVRIPQ 1014

Query: 586  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
             GDKF+SRHGQKGT+G+TY  EDMP+  EGITPD+I+NPHA+PSRMTIG L+EC++GK A
Sbjct: 1015 TGDKFASRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVECLLGKTA 1074

Query: 646  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
            A  G EGDATPF    V +IS  LH  GY+  G E +Y+GHTGR L ++IF GPTYYQRL
Sbjct: 1075 AIFGGEGDATPFNGYAVLDISNRLHSLGYERFGNERLYHGHTGRHLPSLIFFGPTYYQRL 1134

Query: 706  KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 765
            KHMVDDKIH+R RGPV +LTRQP EG+SR+GGLRFGEMERDCMI+HGA+H LKERLF+QS
Sbjct: 1135 KHMVDDKIHARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMISHGAAHMLKERLFEQS 1194

Query: 766  DAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
            DAYRVHVC+ CGL+  A+L + +FEC+ C NK+ I Q+ IPYACKLL QELMAM I PR+
Sbjct: 1195 DAYRVHVCDICGLVCTADLSRGNFECKLCDNKSRISQICIPYACKLLLQELMAMCIYPRL 1254

Query: 826  LTK 828
            + +
Sbjct: 1255 VLQ 1257


>gi|55583704|gb|AAV53371.1| RNA polymerase II second largest subunit [Strobilomyces floccopus]
          Length = 908

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/771 (67%), Positives = 612/771 (79%), Gaps = 26/771 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 139 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 198

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 199 LFKKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGV 258

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 259 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 318

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 319 ALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 377

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ I  L Q  
Sbjct: 378 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGF 437

Query: 300 SPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-----HPEEAYAD--- 348
             +DG    W  LV  G IE +D EEEET MISMT  DL  +RL     +P E   D   
Sbjct: 438 RDDDGEEFKWEQLVKTGIIELLDAEEEETVMISMTPEDLENSRLQSAGINPHENDGDFDP 497

Query: 349 -----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                      T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+
Sbjct: 498 AARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNF 557

Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQED VIMNQSS
Sbjct: 558 LVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDFVIMNQSS 617

Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
           IDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V
Sbjct: 618 IDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNV 677

Query: 518 SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
            GED+IIGKT PI  D E  GQ +R + RRD S  L+ +E G+VDQVL+TTN++G +FVK
Sbjct: 678 KGEDIIIGKTAPIPPDSEELGQRTRTHNRRDVSTPLKSTENGIVDQVLITTNSEGQKFVK 737

Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
           VRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+++NPHAIPSRMTIG 
Sbjct: 738 VRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGH 797

Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTG++L A I
Sbjct: 798 LVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQI 857

Query: 696 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
           +LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERD
Sbjct: 858 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 908


>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
          Length = 1194

 Score = 1073 bits (2775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/832 (61%), Positives = 635/832 (76%), Gaps = 18/832 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHV T D CE++K+Y+ GY+ HRLL   LGR  EDDRDHYG KRLD+AG LLG LFR 
Sbjct: 373  FLPHVSTKDSCESQKSYFIGYMCHRLLNAHLGRIKEDDRDHYGKKRLDMAGSLLGMLFRN 432

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG--TRAG 118
            LFR+  ++   Y++   D G  +N+  A K   I+ GLKY+LATGNWG  NAAG  ++ G
Sbjct: 433  LFRRFVKEAGRYLKAQADKGDSLNITKAFKKDIISDGLKYALATGNWG-TNAAGEVSKTG 491

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            VSQVLNRLT+ASTLSHLRRLN+P+ + GKL KPRQLHN+ WGM+CPAETPEGQACGLVKN
Sbjct: 492  VSQVLNRLTFASTLSHLRRLNTPLQKSGKLTKPRQLHNTHWGMVCPAETPEGQACGLVKN 551

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            L+LM +++VGSAA  + E LE +GTEN   ISP+ I ++TK+FVNGCW+GIH + E L+ 
Sbjct: 552  LSLMAFVSVGSAAERLREILENYGTENLVSISPSDIHESTKVFVNGCWIGIHNESEDLIN 611

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
             ++ +RR + +  E+ +VRDI  +E++ YTD+GR  RPLFIV+  RL++KK  ++ LQ  
Sbjct: 612  NIKLMRRALLIPKEISIVRDIPNREVKFYTDHGRVQRPLFIVDDNRLILKKTHVVRLQDH 671

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E  +   + D + +G +E++D EEEET+MI+M + DL          Y  TYTHCEIHPS
Sbjct: 672  ERSDSMNFDDTLKEGLVEFLDVEEEETSMIAMNVGDL------ENRNYCSTYTHCEIHPS 725

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRN YQSAMGKQAMG+Y +NYQ RMDTLA+VLYYPQKPLV  
Sbjct: 726  MILGVCASIIPFPDHNQSPRNCYQSAMGKQAMGVYCSNYQIRMDTLAHVLYYPQKPLVVA 785

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+++  H ++LP G ++IVAI CY+GYNQ DSVIM+Q+ IDRG FRS+F+++  +   ++
Sbjct: 786  RSLDFPHVKELPPGCDSIVAITCYTGYNQVDSVIMSQAPIDRGCFRSVFYKNIFEIPVRV 845

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT---PISQDEA 535
              L++     PD S  +G R+G Y KLD DGL  PG  V G+D+IIGKT     +  DE 
Sbjct: 846  ERLLR----YPD-STVVGRRNGDYTKLDIDGLIFPGKNVLGDDIIIGKTALPRNLFNDEM 900

Query: 536  QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
              Q +   ++D S SLRHSE G++D V+LT+N +G  F KV++R++RIPQIGDKF+SRHG
Sbjct: 901  DDQTN-LIKKDDSTSLRHSEKGIIDSVILTSNEEGDSFTKVKMRAIRIPQIGDKFASRHG 959

Query: 596  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
            QKGTVGMTY QED+P+T EGI PDIIVNPHAIPSRMTIG LIEC+  KVA   G+EGDAT
Sbjct: 960  QKGTVGMTYRQEDIPFTQEGIIPDIIVNPHAIPSRMTIGHLIECLASKVACFKGEEGDAT 1019

Query: 656  PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            PF DVTV++IS  LH+ GYQ RG E MY+G TGR++  MIFLGPTYYQRLKHMVDDKIHS
Sbjct: 1020 PFQDVTVEHISNDLHRLGYQKRGNEVMYDGWTGRKMDTMIFLGPTYYQRLKHMVDDKIHS 1079

Query: 716  RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
            R RGP+QILTRQP EGRSR GGLRFGEMERDCM++HGA+ FLKERLFD SD Y VHVC  
Sbjct: 1080 RSRGPLQILTRQPTEGRSRHGGLRFGEMERDCMVSHGAARFLKERLFDVSDCYTVHVCRI 1139

Query: 776  CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            CGLI  ANL++  + CRGC+N T+I QV +PYACKLLFQELMAM IAPRM+T
Sbjct: 1140 CGLICEANLRQQKYLCRGCQNSTNICQVGLPYACKLLFQELMAMQIAPRMIT 1191


>gi|46277263|gb|AAS86822.1| RNA polymerase II second largest subunit, partial [Liriodendron
           tulipifera]
          Length = 539

 Score = 1072 bits (2772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/540 (93%), Positives = 529/540 (97%), Gaps = 1/540 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRL
Sbjct: 61  WVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+ I +LQQRE+ +D GWHDLVAKGFIEY+DTEEEETTMISMTI+DLV ARL+P+EA
Sbjct: 121 LIKKKHIRSLQQRET-QDEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPDEA 179

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 180 YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 239

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 240 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 299

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTL+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 300 LFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 359

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTPI+QDE+QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQ
Sbjct: 360 KTTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 419

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 420 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 479

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
            HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 480 VHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 539


>gi|159487647|ref|XP_001701834.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
            reinhardtii]
 gi|158281053|gb|EDP06809.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
            reinhardtii]
          Length = 1634

 Score = 1070 bits (2768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/744 (67%), Positives = 599/744 (80%), Gaps = 3/744 (0%)

Query: 6    GTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 65
             + +F ET+K Y+ GY++HRL+L ALGRR EDDRDHY NKRLDL GPL+ GLFR+LFRKL
Sbjct: 373  ASKEFMETRKGYFVGYMVHRLMLVALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKL 432

Query: 66   TRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNR 125
             +++R   Q+ VD GK++N+  AI  K IT GLKYSLATGNWG+    G RAGVSQVL R
Sbjct: 433  CKELRMQAQRMVDAGKEINVISAINDKVITRGLKYSLATGNWGEQGKQGIRAGVSQVLAR 492

Query: 126  LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 185
            LTYASTLSHLRR+NSPIGREGKLAKPRQLHNS WG+ CPAETPEGQA GLVKN+ALM YI
Sbjct: 493  LTYASTLSHLRRVNSPIGREGKLAKPRQLHNSLWGIFCPAETPEGQAVGLVKNMALMCYI 552

Query: 186  TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR 245
            TVG+ + P++  LEE+ TE  +E++PA I  +TK+F+NG W+GI RDP  L+K LR +RR
Sbjct: 553  TVGTPSLPVVAHLEEFNTEALDEVTPADIAASTKVFINGVWLGIQRDPTALIKNLRAMRR 612

Query: 246  RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG- 304
            +V  +TEV ++ D  LKELRI+TDYGR SRPL+I E  RLL+ K  I  L      ED  
Sbjct: 613  QVAFSTEVAIIYDGPLKELRIFTDYGRASRPLYICEDNRLLVSKHHIRRLISPLPDEDEY 672

Query: 305  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVC 364
             W  LV  G +EYID EEEETTMI+MTI DL  AR     A   TYTHCEIHP++ILGVC
Sbjct: 673  AWPQLVQDGLVEYIDAEEEETTMIAMTIADLRNAR-EAGAATGTTYTHCEIHPAMILGVC 731

Query: 365  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 424
            ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TNYQ RMDT  +VLYYPQKPLV TRAM++L
Sbjct: 732  ASIIPFPDHNQSPRNTYQSAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYL 791

Query: 425  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 484
             FR+LPAGINAIVAI CYSGYNQEDS+++N SSIDRGF RS+F+R+Y++EEKK G++ +E
Sbjct: 792  KFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSIFYRAYKEEEKKAGSMARE 851

Query: 485  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTR 544
            +   PD S T  M+HG+YDKLD DGL PPGTRVSGED+I GKT  +  D+  G   R+T+
Sbjct: 852  EIEAPDPSVTSKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLP-DDPTGAVQRFTK 910

Query: 545  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
            +D S++LR  E G++DQV+LTTN +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT G+TY
Sbjct: 911  KDASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITY 970

Query: 605  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            T EDMP+T EGI PDIIVNPHAIPSRMTIG L+E +M KVA+ MG EGDATPFT VTVDN
Sbjct: 971  TMEDMPFTAEGIVPDIIVNPHAIPSRMTIGHLVEALMSKVASLMGSEGDATPFTKVTVDN 1030

Query: 665  ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 724
            +S+ LH  GYQ RG+E MY+GHTGR+L A IFL PTYYQRLKHMVD KIHSRGRGPVQ+L
Sbjct: 1031 VSQMLHDLGYQRRGWEVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVL 1090

Query: 725  TRQPAEGRSRDGGLRFGEMERDCM 748
            TRQPAEGR+RDGGLRFGEMERDC+
Sbjct: 1091 TRQPAEGRARDGGLRFGEMERDCL 1114



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 69/85 (81%)

Query: 746  DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 805
            +C+I+HGA+ FLKERLFDQSDAYR+HVCE  GLIA+ANLKK  F     K+ ++I QV+I
Sbjct: 1543 NCIISHGAAAFLKERLFDQSDAYRIHVCERSGLIAVANLKKQQFTSTIYKDGSNIYQVYI 1602

Query: 806  PYACKLLFQELMAMAIAPRMLTKED 830
            PYACKLLFQELMAM IAPRM  + D
Sbjct: 1603 PYACKLLFQELMAMCIAPRMQFERD 1627


>gi|6606113|gb|AAF19069.1|AF107797_1 DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
          Length = 1029

 Score = 1070 bits (2768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/872 (60%), Positives = 640/872 (73%), Gaps = 47/872 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+G G     +KA++ GY+++RLL CALGR   DDRDH G KRLDLAGPL+  LFR+
Sbjct: 158  FLPHIGQGPDATARKAFFLGYMVNRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRL 217

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
             F K T+D   Y+QK V++G+ +N+    K   ITSGLKYSLATGNWG Q      +AGV
Sbjct: 218  QFDKATKDFYRYMQKRVESGQPINIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGV 277

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R T++STLSHLRR N+PIGREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL
Sbjct: 278  SQVLSRYTFSSTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNL 337

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI-HRDPEMLVK 238
            +LM  +T      P+L ++     E  E+  P + P+ATKIFV+G W  +  RDP+ LV 
Sbjct: 338  SLMSMVTNSYETGPLLNYVMTKHVEALEDWEPRLNPRATKIFVDGVWFAVVLRDPKRLVD 397

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRD 291
             LR+LRR+   ++ V +V DIR KE +I  D GR  RPLF+VE  R       L++ K  
Sbjct: 398  DLRKLRRKGVFDSHVSLVWDIREKEFKISGDSGRIVRPLFVVETDRSSENLGNLVLNKEH 457

Query: 292  IIALQQRESPEDGG-----------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
            I  L Q    ++ G           W DL+  G +EY+D EEEET MI MT   L  ++ 
Sbjct: 458  INKLDQTAYLKESGFQWTDEIRPYGWTDLLESGVVEYLDAEEEETAMICMTPEALADSKA 517

Query: 340  --------------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
                                L+P   +A T+THCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 518  RWLGMEIENEDDPLRRNDPLLNP---HAHTFTHCEIHPSMILGVCASIIPFPDHNQSPRN 574

Query: 380  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
            TYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL  T AM++L FR+LPAG NAIVAI
Sbjct: 575  TYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLARTMAMDYLKFRELPAGQNAIVAI 634

Query: 440  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            ACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y+D EK +G  V E F +P RS+T+ ++H
Sbjct: 635  ACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDSEKSVGHSVVEQFEKPTRSDTLRLKH 694

Query: 500  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETG 557
            G+YDK+D+DG+  PG RVSGED+I+GKT P++ D E  GQ   ++ +RD S  LR +E+G
Sbjct: 695  GTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDAEELGQRLKQHIKRDVSTPLRSTESG 754

Query: 558  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            +VDQV+LTT A+G RF KVRVR+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI 
Sbjct: 755  IVDQVMLTTTAEGHRFAKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIV 814

Query: 618  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
            PD+I+NPHAIPSRMTI  LIEC + KVA   G EGDATPFT VTV  +S+ L   GYQ R
Sbjct: 815  PDLIINPHAIPSRMTIAHLIECQLSKVATLRGDEGDATPFTKVTVTQVSELLRTMGYQSR 874

Query: 678  GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
            GFE MYNGHTGR++ A +FLGPTYYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDGG
Sbjct: 875  GFEVMYNGHTGRKMVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGG 934

Query: 738  LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKN 796
            LRFGEMERDCMIAHGAS FLKERLFD SD +RVHVC+ CGL+  IA LKKN+FEC+ C N
Sbjct: 935  LRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHVCDICGLMTVIAKLKKNTFECKNCNN 994

Query: 797  KTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            K  I Q+++PYA KLLFQEL AM IA R+ TK
Sbjct: 995  KNKISQIYLPYAAKLLFQELWAMNIAARLYTK 1026


>gi|46277285|gb|AAS86833.1| RNA polymerase II second largest subunit, partial [Rhododendron
           macrophyllum]
          Length = 549

 Score = 1070 bits (2767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/549 (95%), Positives = 538/549 (97%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHRDP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61  WVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIK++DI ALQQRE+PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 121 LIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEA 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181 YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDV+IG
Sbjct: 301 LFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIG 360

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTPI+QDEAQG A+RYTRRDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361 KTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421 IGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQ  G     BGHTGRRLT+MIFLGPTYYQRL
Sbjct: 481 AHMGKEGDATPFTDVTVDNISKALHKCGYQCVGSRPCTBGHTGRRLTSMIFLGPTYYQRL 540

Query: 706 KHMVDDKIH 714
           KHMVDDKIH
Sbjct: 541 KHMVDDKIH 549


>gi|46277269|gb|AAS86825.1| RNA polymerase II second largest subunit, partial [Platanus
           orientalis]
          Length = 536

 Score = 1070 bits (2767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/540 (93%), Positives = 526/540 (97%), Gaps = 4/540 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR+PE+LV TLR+LRR+VDVNTEVGV+RDI LKELR+YTDYGRCSRPLFIVEKQRL
Sbjct: 61  WVGIHRNPELLVNTLRKLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRPLFIVEKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+DI ALQQR    DGGWHDLVAKG+IEY+DTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 121 LIKKKDIRALQQR----DGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVTARLNPEEA 176

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 177 YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 236

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 237 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 296

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 297 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 356

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTPI+Q+E QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQ
Sbjct: 357 KTTPIAQEEPQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 416

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 417 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 476

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 477 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 536


>gi|2736125|gb|AAB94063.1| RPB140 [Ginkgo biloba]
          Length = 555

 Score = 1070 bits (2767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/555 (90%), Positives = 535/555 (96%), Gaps = 1/555 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP AT
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPSAT 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHRDP++LVKTLR+LRR+VDVNTEVGVVRDIRL+ELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRDPDLLVKTLRQLRRQVDVNTEVGVVRDIRLRELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVEKQRLLIKK DI ALQQRE PE+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV A
Sbjct: 121 IVEKQRLLIKKADIRALQQREGPEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVTA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R +PEEAY+ TYTHCEIHPSLILGVCASIIPFPDH+QSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180 RNNPEEAYSHTYTHCEIHPSLILGVCASIIPFPDHDQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLA+VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQE SVIMNQSSI
Sbjct: 240 LRMDTLAFVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEGSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRSLF+R+YRDEEK+MGTLVKE+FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300 DRGFFRSLFYRAYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKT+PIS+ +  GQ +RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVK+R+
Sbjct: 360 GEDVIIGKTSPISRMKQGGQVARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKIRM 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAH+GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLG
Sbjct: 480 CIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLG 539

Query: 699 PTYYQRLKHMVDDKI 713
           PTYYQRLKHMVDDKI
Sbjct: 540 PTYYQRLKHMVDDKI 554


>gi|56694372|gb|AAW22926.1| RNA polymerase II second largest subunit [Illicium anisatum]
          Length = 539

 Score = 1069 bits (2765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/541 (93%), Positives = 530/541 (97%), Gaps = 2/541 (0%)

Query: 174 GLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP 233
           GLVKNLALMVY+TVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P
Sbjct: 1   GLVKNLALMVYVTVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP 60

Query: 234 EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
           E+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI 
Sbjct: 61  ELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIR 120

Query: 294 ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 353
           ALQQRE+PE+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV ARL+PEEA ++TYTHC
Sbjct: 121 ALQQRETPEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVTARLNPEEAISETYTHC 179

Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
           EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQK
Sbjct: 180 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQK 239

Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
           PLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD
Sbjct: 240 PLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 299

Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 533
           EEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD
Sbjct: 300 EEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQD 359

Query: 534 EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 593
           E QGQASRYTRRDHS  LRHSE+GM+DQVLLTTNADGLRFVKVR+RSVR+PQIGDKFSSR
Sbjct: 360 E-QGQASRYTRRDHSTCLRHSESGMIDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSR 418

Query: 594 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 653
           HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD
Sbjct: 419 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 478

Query: 654 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKI
Sbjct: 479 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKI 538

Query: 714 H 714
           H
Sbjct: 539 H 539


>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
 gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
          Length = 1104

 Score = 1068 bits (2763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/761 (67%), Positives = 601/761 (78%), Gaps = 32/761 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG  D+CETKKAY+ GYI+HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 349  MLPHVGISDYCETKKAYFLGYIVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAYLFRG 408

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+ LT++VR Y QK +D GKD NL+ AIK + IT GLKYSLATGNWG Q  A   RAGV
Sbjct: 409  LFKNLTKEVRIYAQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGV 468

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHNS WGM+CPAETPEGQA GLVKNL
Sbjct: 469  SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNL 528

Query: 180  ALMVYIT----------------------VGSAAYPILEFLEEWGTENFEEISPAVIPQA 217
            ALM YI+                      VGS   PILEFLEEW  EN EE++P+ I  A
Sbjct: 529  ALMAYISMVHDNGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEVAPSAIANA 588

Query: 218  TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRP 276
            TKIFVNGCWVG+HRDPE L+ TL++LRR++D+  +EV +VRDIR +E+RI+TD GR  RP
Sbjct: 589  TKIFVNGCWVGVHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDIREREIRIFTDAGRICRP 648

Query: 277  LFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
            L IVEKQ+LL+KK  +  L++RE   +  W DLVA G +EYIDT EEET M++MT +DL 
Sbjct: 649  LLIVEKQKLLLKKHHVDMLKEREY-NNYSWQDLVAGGVVEYIDTLEEETVMLAMTPDDLQ 707

Query: 337  QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
               +    AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN
Sbjct: 708  DKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITN 763

Query: 397  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
            +  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGINAIVAIA Y+GYNQEDSVIMN S
Sbjct: 764  FHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNAS 823

Query: 457  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
            +IDRG FRS+F+RSY++ E K G   +E F +P R    GMR+  YDKLDDDG+  PG R
Sbjct: 824  AIDRGLFRSVFYRSYKESESKKGLDQEEIFEKPTRDEVTGMRNAIYDKLDDDGIIAPGVR 883

Query: 517  VSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
            VSGEDVIIGKT   P ++DE +    R+T+RD S  LR SETG+VDQV+++ N +G +F 
Sbjct: 884  VSGEDVIIGKTVTLPENEDELESTTKRFTKRDSSTFLRSSETGIVDQVMVSINQEGYKFC 943

Query: 575  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
            KVRVRSVRIPQIGDKF+SRHGQKGT G+TY QEDMP+T EGI+PDII+NPHA+PSRMTIG
Sbjct: 944  KVRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTAEGISPDIIINPHAVPSRMTIG 1003

Query: 635  QLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
             LIEC+ GKV+A+ G+ GDATPF D V V  IS  LH+ GY +RG E +YNG TGR+L+ 
Sbjct: 1004 HLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLHEYGYHLRGNEVVYNGFTGRKLST 1063

Query: 694  MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
             +F+GPTYYQRLKHMVDDKIHSR RGPVQ L RQP EGRSR
Sbjct: 1064 QLFIGPTYYQRLKHMVDDKIHSRARGPVQNLNRQPMEGRSR 1104


>gi|154304837|ref|XP_001552822.1| hypothetical protein BC1G_09004 [Botryotinia fuckeliana B05.10]
          Length = 1207

 Score = 1068 bits (2762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/821 (61%), Positives = 634/821 (77%), Gaps = 42/821 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 383  LLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRN 442

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR+LT DV  Y+Q+CV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q  AA + AGV
Sbjct: 443  LFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGV 502

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 503  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 562

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVGIHRDP  LVK 
Sbjct: 563  ALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGIHRDPAHLVKC 622

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            ++ LRR   ++ EV ++R+IR +E +I+TD GR  RPL +++       K  L++ K  I
Sbjct: 623  VQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSANKGNLVLNKDHI 682

Query: 293  IALQ----------QRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
              L+          + E   +G  G+  L+  G +EY+D EEEET MI+MT  DL  +R 
Sbjct: 683  RRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQ 742

Query: 340  ------LHPEEA-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                  + P+E+              A  +THCEIHPS+ILG+CASIIPFPDHNQSPRN 
Sbjct: 743  LQAGYQIRPDESGDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNC 802

Query: 381  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
            YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI 
Sbjct: 803  YQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIM 862

Query: 441  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
            CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+T+ ++ G
Sbjct: 863  CYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQG 922

Query: 501  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
            +YDKLDDDG+  PG RV+G D+IIGKT PI+ D E  GQ ++ + +RD S  LR +E+G+
Sbjct: 923  TYDKLDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGL 982

Query: 559  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
            VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY Q+DMP+T EG+ P
Sbjct: 983  VDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVP 1042

Query: 619  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
            D+I+NPHAIPSRMTI  LIEC + KV+   G EGDATPFT+VTVD++SK L   GY  RG
Sbjct: 1043 DLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPFTEVTVDSVSKLLRAHGYHSRG 1102

Query: 679  FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
            FE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGL
Sbjct: 1103 FEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGL 1162

Query: 739  RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
            RFGEMERDCMI+HGAS FLKERLF+ SDA+RVH+C+ CGL+
Sbjct: 1163 RFGEMERDCMISHGASAFLKERLFEVSDAFRVHICDICGLM 1203


>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM 1558]
          Length = 1214

 Score = 1067 bits (2760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/861 (60%), Positives = 632/861 (73%), Gaps = 40/861 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHV   +  E+KKAY+ GY+IHRL   AL RR  DDRDH+GNKR+DLAGPLL  LFR 
Sbjct: 353  FLPHVSVSEGFESKKAYFLGYMIHRLCSAALNRRDLDDRDHFGNKRMDLAGPLLANLFRG 412

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LF+ LT+ V  ++  C++  +      A++   IT G +Y++ATGNWG       R GVS
Sbjct: 413  LFKNLTKRVHRHLTTCIEKNRPFVFSEALQPSIITDGFRYAIATGNWG--TGTNRRVGVS 470

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR TYASTLSHLRR N+PI R  K  KPRQLHN+ WGM+CPAETPEG ACGLVKNLA
Sbjct: 471  QVLNRYTYASTLSHLRRTNTPIDRGSKATKPRQLHNTHWGMVCPAETPEGAACGLVKNLA 530

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            L+ YI+VGS A P++EFLEEWG E+  E      P ATK+FVNG W+G+HR+   L   L
Sbjct: 531  LLSYISVGSYAAPVMEFLEEWGLEDQSEFQHN--PGATKVFVNGVWMGVHRNAGTLYANL 588

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDI----IA 294
             ++RR   +  EV +VRDIR +ELR+ TD GR  RPL IV++  Q L IKK  I    I 
Sbjct: 589  LQMRRGGQLKHEVSIVRDIRERELRLCTDAGRVCRPLLIVDQRTQSLKIKKSHIERTEIL 648

Query: 295  LQQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL------------- 340
            L+  E    G  W +L+  G IEY+D  EEET +I+MT  DLV AR              
Sbjct: 649  LEGGEDIATGSAWIELLNDGVIEYVDAAEEETILIAMTSEDLVNARTASGKDELVRQRAA 708

Query: 341  ----HPEEA-------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
                H + A       ++  YTH EIHPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 709  HNLDHFDPAARVKSTNWSQNYTHMEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQA 768

Query: 390  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
            MG+++TNYQ RMDT+A +LYYPQKPL TTR+ME+L F +LPAG NAIVAI CYSGYNQED
Sbjct: 769  MGVHLTNYQLRMDTMANILYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQED 828

Query: 450  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLD 506
            SVIMNQSSIDRG FRSL++RSY D EK  G    E   +PDR +T+ M+ GS   Y KLD
Sbjct: 829  SVIMNQSSIDRGLFRSLYYRSYTDAEKMTGMEKVETIEKPDRKDTLRMKMGSSDRYAKLD 888

Query: 507  DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLL 564
             DGL  P T V+G+D+IIGKT PI ++ E  GQ  S +T+RD S  L+ +E G+VDQV+L
Sbjct: 889  IDGLIAPATNVNGDDIIIGKTAPIPEESEELGQRTSLHTKRDVSTPLKSTEQGVVDQVML 948

Query: 565  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 624
            +TN DG +FVK+R+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NP
Sbjct: 949  STNGDGHKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINP 1008

Query: 625  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 684
            HAIPSRMTIG L+EC++ K++   G EGDATPFT++TV+ +SK L + GYQ RG E MY+
Sbjct: 1009 HAIPSRMTIGHLVECLLSKLSTMTGSEGDATPFTELTVEKVSKFLRQRGYQSRGLEVMYH 1068

Query: 685  GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 744
            GHTGR+L A I+ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEME
Sbjct: 1069 GHTGRKLQAQIYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEME 1128

Query: 745  RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVH 804
            RDCMI+HG + FLKER++D SD +RVHVC+ CGL+AIANLKK  F C  C+N T I Q++
Sbjct: 1129 RDCMISHGIAAFLKERMYDSSDGFRVHVCDQCGLMAIANLKKQEFHCSVCRNSTQISQIY 1188

Query: 805  IPYACKLLFQELMAMAIAPRM 825
            IPYA KLLFQEL AM IA RM
Sbjct: 1189 IPYAAKLLFQELQAMNIAVRM 1209


>gi|451994472|gb|EMD86942.1| hypothetical protein COCHEDRAFT_72858 [Cochliobolus heterostrophus
            C5]
          Length = 1208

 Score = 1067 bits (2760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/826 (61%), Positives = 625/826 (75%), Gaps = 46/826 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV+N +D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P ATK+FVNG WVG+H + + LV  
Sbjct: 560  SLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKR-- 290
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  K   
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEIS 679

Query: 291  -DIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              + A QQ  S   G           GW  L+  G +EY+D EEEET MI+ +  DL + 
Sbjct: 680  NKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 RL P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  REMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTRE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTDVTVD IS+ L   GY
Sbjct: 1040 GVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDVTVDQISQLLEDAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG++L   IFLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMS 1205


>gi|378729989|gb|EHY56448.1| DNA-directed RNA polymerase II subunit RPB2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1263

 Score = 1066 bits (2757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/873 (60%), Positives = 638/873 (73%), Gaps = 48/873 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+G G     +KA++ GY++HRLL CALGR   DDRDH G KRLDLAGPL+  LFR+
Sbjct: 392  FLPHIGQGPDATARKAFFLGYMVHRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRL 451

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
             F K  +D   Y+QK V+ G+ +N+    K   ITSGLKYSLATGNWG Q      +AGV
Sbjct: 452  QFDKAAKDFYRYMQKRVEAGQPINIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGV 511

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVL+R T++STLSHLRR N+PIGREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL
Sbjct: 512  SQVLSRYTFSSTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNL 571

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG-IHRDPEMLVK 238
            +LM  +T      P++ ++     E  E+  P + P+ATK+FV+G W   I RDP+ LV 
Sbjct: 572  SLMSMVTNSYETAPLVNYVLTKNVEALEDWEPRLNPKATKVFVDGVWFAVILRDPKRLVD 631

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRD 291
             LR LRRR   +++V +V DIR KE +I  D GR  RPLF+VE  R       L++ K  
Sbjct: 632  DLRMLRRRGVFDSQVSLVWDIREKEFKISGDSGRIVRPLFVVETDRSSENHGNLVLNKEH 691

Query: 292  IIALQQ------------RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            I  L +             E  +  GW +L+A G +EY+D EEEET MI MT   L  +R
Sbjct: 692  IRKLDETTYLKENDFQDWNEQVKPFGWTELLASGVVEYLDAEEEETAMICMTPEALSDSR 751

Query: 340  ---------------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
                                 L+P   +A T+THCEIHPS+ILGVCASIIPFPDHNQSPR
Sbjct: 752  AKHFGLEIENDDDPLSRNDPLLNP---HAHTFTHCEIHPSMILGVCASIIPFPDHNQSPR 808

Query: 379  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
            NTYQSAMGKQAMG+++TN+  RM+T++ +LYYPQKPL  T AM++L FR+LPAG NAIVA
Sbjct: 809  NTYQSAMGKQAMGVFLTNFDQRMETMSNILYYPQKPLARTMAMDYLKFRELPAGQNAIVA 868

Query: 439  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
            IA YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y+D EK +G  V E F +P R++T+ ++
Sbjct: 869  IATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDSEKSVGHSVVEQFEKPTRADTLRLK 928

Query: 499  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSET 556
            HG+YDK+D+DG+  PG RVSGED+I+GKT P++ D E  GQ   ++ +RD S  LR +E+
Sbjct: 929  HGTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDAEELGQRLKQHIKRDVSTPLRSTES 988

Query: 557  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
            G+VDQV+LTT A+G RF KVRVR+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI
Sbjct: 989  GIVDQVMLTTTAEGHRFAKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGI 1048

Query: 617  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
             PD+I+NPHAIPSRMTI  LIEC + KVA   G EGDATPFT VTV  IS+ L   GYQ 
Sbjct: 1049 VPDLIINPHAIPSRMTIAHLIECQLSKVATLRGDEGDATPFTKVTVTQISELLRNMGYQS 1108

Query: 677  RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 736
            RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDG
Sbjct: 1109 RGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDG 1168

Query: 737  GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCK 795
            GLRFGEMERDCMIAHGAS FLKERLFD SD +RVHVC+ CGL+  IA LKKN+FEC+ C 
Sbjct: 1169 GLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHVCDICGLMTVIAKLKKNTFECKNCN 1228

Query: 796  NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
            NK  I Q+++PYA KLLFQEL AM IA R+ TK
Sbjct: 1229 NKNKISQIYLPYAAKLLFQELWAMNIAARLYTK 1261


>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
 gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
          Length = 1233

 Score = 1065 bits (2755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/835 (61%), Positives = 642/835 (76%), Gaps = 12/835 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPHVG GD    +KAY+ GY++HRLLL ALGRR  DDRDHYGNKRL+LAG LL GLF  
Sbjct: 400  MLPHVGIGDTSYDRKAYFIGYMVHRLLLGALGRRPLDDRDHYGNKRLELAGGLLQGLFLQ 459

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LF+K+ +++ + ++K +    ++++  A+  +TIT GL+YSLATGNWG   +   RAGV+
Sbjct: 460  LFKKVVKEMESTLKKSILKSSEIDVAPAVNKRTITKGLQYSLATGNWGVQGSRDIRAGVA 519

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTY STLSHLRRLN+PI R GK A PRQLHN+QWG++CPAETPEG ACGLVKNLA
Sbjct: 520  QVLNRLTYTSTLSHLRRLNTPIERSGKQAAPRQLHNTQWGVICPAETPEGGACGLVKNLA 579

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YITVG+    I + L+E G     E+  + + + TK+F+NG W+G+H  P+ LVK L
Sbjct: 580  LMSYITVGTDKTHISKMLDELGINKLHELDESDLNKYTKVFLNGMWMGVHHTPDELVKHL 639

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR--LLIKKRDIIALQQR 298
            R LRR   V+ +V +VRD+R +E+RI+ D GRC+RPLFIV++    L IK + + AL++ 
Sbjct: 640  RVLRRTGAVDMQVSIVRDVREREVRIWCDSGRCARPLFIVDRDHDTLFIKNQHVQALREN 699

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYA------DTYTH 352
                   W +L+ +G +E IDTEEEE+ MI+M   +LV+ R    E  +        YTH
Sbjct: 700  TM----NWDNLLEQGLVELIDTEEEESIMIAMDFRELVEKRSSANEGKSRKGGSRQPYTH 755

Query: 353  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 412
             EIHPS+ILG+  SIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q RMDTLA+VLYYPQ
Sbjct: 756  AEIHPSMILGILGSIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFQQRMDTLAHVLYYPQ 815

Query: 413  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 472
            +PLVTT+ ME+L F +LPAG NA+VAIACYSGYNQEDSVIMNQS+IDRG FRS+F+R+Y 
Sbjct: 816  RPLVTTQPMEYLRFGELPAGQNAVVAIACYSGYNQEDSVIMNQSAIDRGLFRSVFYRTYS 875

Query: 473  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 532
            D E+K G  + E+F +P R  T GM+  +Y+KL+DDG+  PG RVSG D+IIGKT P+ +
Sbjct: 876  DHERKKGNFLLENFEKPKRDTTAGMKTSTYEKLEDDGIIAPGVRVSGSDIIIGKTVPLPE 935

Query: 533  DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 592
            + A+ + SR TR D S  LR +E G+VD V++TT+++G +FVK++VR VRIPQIGDKFSS
Sbjct: 936  ESAKQKTSRQTRLDMSTPLRSNENGIVDTVVVTTDSEGFKFVKIKVRVVRIPQIGDKFSS 995

Query: 593  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 652
            RHGQKGT G+TY QED+P+T EGI PDIIVNPHAIPSRMT+GQLIEC++GK+++  G EG
Sbjct: 996  RHGQKGTCGITYRQEDLPFTREGIVPDIIVNPHAIPSRMTVGQLIECLLGKISSLSGNEG 1055

Query: 653  DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
            DATPFTD  V+  S+ LH  GYQ R  E M+NGHTGR+L A IF+GPTYYQRLKHMVDDK
Sbjct: 1056 DATPFTDANVNYFSEMLHSLGYQKRANEVMFNGHTGRKLEAQIFIGPTYYQRLKHMVDDK 1115

Query: 713  IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 772
            IHSR RGP+Q LTRQP EGR+RDGGLRFGEMERDCMI+HG++ +LKERLF  SD YRVH+
Sbjct: 1116 IHSRARGPLQNLTRQPVEGRARDGGLRFGEMERDCMISHGSAAWLKERLFQVSDEYRVHI 1175

Query: 773  CEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            C  CG++A AN+K+  F+C  C NKT   QV IPYA KL+ QELMAM +A R++T
Sbjct: 1176 CNVCGMMATANIKQQQFKCDACDNKTSFSQVFIPYAFKLMIQELMAMNLAVRIIT 1230


>gi|189197211|ref|XP_001934943.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187980891|gb|EDU47517.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1208

 Score = 1065 bits (2755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/826 (61%), Positives = 631/826 (76%), Gaps = 46/826 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV+N +D N+Q A+KA TIT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 440  LFLKLTKDVYKYLQRCVENNQDFNVQMAVKASTITNGLKYSLATGNWGDQKKAASAKAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P ATK+FVNG WVG+H + + LV  
Sbjct: 560  SLMCYVSVGSDATPIVDFMTQRNMQLLEEYDQNQSPDATKVFVNGVWVGVHSNAQQLVTV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  LI  ++I 
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDVRKPNRNHLIFTKEIS 679

Query: 293  --IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              +  +Q E+ +  GW +            L+  G +EY+D EEEET MI+ +  DL + 
Sbjct: 680  NKLKSEQMEANQRQGWSEEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEW 739

Query: 338  --------------------ARLHP-EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 RL P  +    +YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  REMKMGLPMTDHSLEGSQRLRRLKPLPDPRIHSYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D A+ GQ +  +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIATDAAELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSRE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTDVTVD +S+ L   GY
Sbjct: 1040 GLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDVTVDQVSQLLENAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG+++   IFLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMS 1205


>gi|429329468|gb|AFZ81227.1| DNA-directed RNA polymerase II subunit, putative [Babesia equi]
          Length = 1219

 Score = 1065 bits (2753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/829 (61%), Positives = 623/829 (75%), Gaps = 20/829 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT    E KK Y+ GY+IHRLLL  LGR  EDDR+H+G KRLDLAGPL+   F  
Sbjct: 404  LLPHVGTEPGSEGKKCYFLGYMIHRLLLSRLGRINEDDREHFGKKRLDLAGPLMASSFGT 463

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIK-AKTITSGLKYSLATGNWGQANAAG-TRAG 118
            LFRK+ +D R  +Q+ +D G+  ++  AI+ A TIT GL+Y L TGNWG+       R G
Sbjct: 464  LFRKMAKDARRILQQQIDCGRAFDVAGAIRSATTITQGLQYQLLTGNWGRDREGKIVRTG 523

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            VSQVLNRLT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKN
Sbjct: 524  VSQVLNRLTFASYLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKN 583

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM YI+VGS A  I EFL EWG ++ +E+ P V+    KIF+NG WVG   + + LV+
Sbjct: 584  LALMCYISVGSVAATINEFLSEWGMDSLDEVPPEVVKDRVKIFINGTWVGCFDEADSLVR 643

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-QRLLIKKRDIIALQQ 297
            TL  LRRR D+++E  +VRDI  +E++I+TD GR  RPLFIVE    L I K  I  +  
Sbjct: 644  TLLELRRRGDISSETSIVRDIVSQEVKIFTDAGRAMRPLFIVENGNTLAINKEHIAMIDN 703

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
             E      W  LV  G IEYID EEEE  MI M ++DL          Y  TYTHCEIHP
Sbjct: 704  NEC----NWDGLVESGVIEYIDCEEEEMCMIGMFVDDL-----KANNTYCSTYTHCEIHP 754

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            S+ILGVCASIIPFPD NQSPRNTYQSAMGKQAMG+Y TN+  RMDTL ++LYYPQKPLV 
Sbjct: 755  SMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMGVYATNFNLRMDTLCHILYYPQKPLVC 814

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            TR+ME L FR+LPAGINAIVAI CY+GYNQEDS+IMNQSSIDRG FRS F R+Y  EEK 
Sbjct: 815  TRSMEFLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYISEEKY 874

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
            +G+ + E F RP  +N +G++ G Y KLD DGL  PG+RV G+D+IIG+T+   +++   
Sbjct: 875  VGSTIVERFERPGTANILGLKRGDYTKLDADGLVEPGSRVMGDDIIIGRTSTADEED--- 931

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
                  R+D S  LR +E G+VD VL++ NA G +F KV+VRSVR+PQIGDKF+SRHGQK
Sbjct: 932  -----MRQDCSCCLRANENGVVDTVLVSVNAKGTKFAKVKVRSVRVPQIGDKFASRHGQK 986

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT+G+TY  ED+P+T EGI PDII+NPHA+PSRMTIG L+EC++GKV A  G EGDATPF
Sbjct: 987  GTIGITYRTEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLVECLIGKVGACCGMEGDATPF 1046

Query: 658  TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
            + +TV  I++ L  CGY   G E  + G TG+ +T+ IF+GPTYYQRLKHMV+DKIH+R 
Sbjct: 1047 SKLTVQQIAERLFDCGYARHGNEAFHCGFTGQMITSRIFVGPTYYQRLKHMVEDKIHARS 1106

Query: 718  RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
            RGP  +LTRQP EGRSR+GGLRFGEMERDCMI+HGA+  LKERLFDQSDAYR+HVC++CG
Sbjct: 1107 RGPSTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRIHVCDNCG 1166

Query: 778  LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            L  IA+L K+SFEC  C NKT+I QV IPYACKLL QELM+MAI P+++
Sbjct: 1167 LCCIADLNKSSFECTACDNKTNISQVAIPYACKLLIQELMSMAIYPKLV 1215


>gi|3002819|gb|AAC08937.1| RPB140 [Chloranthus spicatus]
          Length = 533

 Score = 1064 bits (2752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/534 (94%), Positives = 524/534 (98%), Gaps = 1/534 (0%)

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTL
Sbjct: 1   LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 60

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRE+
Sbjct: 61  RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRET 120

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            E+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV ARL+PEEAY++TYTHCEIHPSLI
Sbjct: 121 QEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLI 179

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 180 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 239

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 240 MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 299

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE QGQAS
Sbjct: 300 LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDETQGQAS 359

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR+PQIGDKFSSRHGQKGTV
Sbjct: 360 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTV 419

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 420 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 479

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           TVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIH
Sbjct: 480 TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIH 533


>gi|156084492|ref|XP_001609729.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
            bovis]
 gi|154796981|gb|EDO06161.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
            bovis]
          Length = 1207

 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/829 (61%), Positives = 627/829 (75%), Gaps = 17/829 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHVGT   CE++K Y+ GY++HRLLL  LGR  EDDRDH+G KRLDLAG L+   F  
Sbjct: 389  FLPHVGTEPGCESRKCYFLGYMVHRLLLSRLGRIPEDDRDHFGKKRLDLAGSLMASSFGT 448

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT-ITSGLKYSLATGNWGQA-NAAGTRAG 118
            LFRK+ +D +  +Q+ +D+G++ ++  A+++ T IT GL+Y L TGNWG+  +    R G
Sbjct: 449  LFRKMVKDTKRILQQQIDSGREFDVAGAVRSATQITHGLQYQLLTGNWGRDRDGKVVRTG 508

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            VSQVLNRLT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKN
Sbjct: 509  VSQVLNRLTFASYLSHLRRLNTPLGREGKIAKPRQLHNTHWGMICPAETPEGQAVGLVKN 568

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM +I+VG+AA  I EFL EWG ++ +E+ P VI    KIF+NG WVG   + E LVK
Sbjct: 569  LALMCFISVGTAASTINEFLCEWGMDSLDEVPPEVIKDRIKIFINGTWVGCFDEAESLVK 628

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-QRLLIKKRDIIALQQ 297
            TL  LRRR ++  E  +V DI  +E++I+TD GR  RPL IVE    L I K DI  L  
Sbjct: 629  TLLELRRRGNIAAETSIVCDIVSQEVKIFTDAGRAMRPLLIVENGNTLAITKTDIARLDN 688

Query: 298  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
             E      W  L+  G +EY+D EEEE  MI+M   DL          Y +TYTHCEIHP
Sbjct: 689  NEC----NWDGLIESGVVEYVDCEEEEMCMIAMFAEDLKN-----NSTYCNTYTHCEIHP 739

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            S+ILGVCASIIPFPD NQSPRNTYQSAMGKQAMG+Y TN+  RMD L+++LYYPQKPLV 
Sbjct: 740  SMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMGVYATNFNLRMDPLSHLLYYPQKPLVC 799

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            TR+ME L FR+LPAGINAIVAI CY+GYNQEDS+IMNQSSIDRG FRS F R+Y  EEK 
Sbjct: 800  TRSMEFLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYVSEEKH 859

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
            +G+ V E F RP+ +  +G++ G Y KLD DGL  PG+RV G+DVIIG+T+  + +E + 
Sbjct: 860  VGSTVVERFERPNPATCVGLKRGDYTKLDADGLVQPGSRVLGDDVIIGRTSACNDEEDEN 919

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
                  R+D S  LR SE G+VD VL+++NA G RF KV+VRS+R+PQIGDKF+SRHGQK
Sbjct: 920  -----LRQDCSCCLRTSENGVVDTVLISSNAKGSRFAKVKVRSIRVPQIGDKFASRHGQK 974

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT+GMTY  ED+P+T EGI PDII+NPHA+PSRMTIG L+EC++GKV A  G EGDATPF
Sbjct: 975  GTIGMTYRTEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLVECLVGKVGACCGMEGDATPF 1034

Query: 658  TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
            + +TV ++++ L +CGY   G E ++ G TG  + + IF+GPTYYQRLKHMV+DKIH+R 
Sbjct: 1035 SKLTVQHVAERLFECGYGKHGNEALHCGFTGEMIVSKIFIGPTYYQRLKHMVEDKIHARA 1094

Query: 718  RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
            RGPV +LTRQP EGRSRDGGLRFGEMERDCMI+HGA+  LKERLFDQSDA+R+HVC+ CG
Sbjct: 1095 RGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAAKMLKERLFDQSDAFRIHVCDRCG 1154

Query: 778  LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            L  +A+L +N+FEC  C NKT+I QV IPYACKLL QELMAMAI P++L
Sbjct: 1155 LCCVADLNRNNFECTACDNKTNISQVTIPYACKLLIQELMAMAIYPKLL 1203


>gi|56694376|gb|AAW22928.1| RNA polymerase II second largest subunit [Acorus gramineus]
          Length = 536

 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/537 (93%), Positives = 523/537 (97%), Gaps = 1/537 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALMVY+TVGSAA PILEFLEEW TENFEEISPAVIPQAT
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYVTVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHR+P++LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVEKQRLLIKKR I ALQQRE+ E+G WH+LV KGFIEYIDTEEEETTMISMTINDL+ A
Sbjct: 121 IVEKQRLLIKKRHIRALQQRETQEEG-WHELVTKGFIEYIDTEEEETTMISMTINDLINA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R +PEEAY+  YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180 RQNPEEAYSSMYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKTTPI+Q+EAQGQASRYT+RDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+
Sbjct: 360 GEDVIIGKTTPIAQEEAQGQASRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMI
Sbjct: 480 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI 536


>gi|44889502|gb|AAS48373.1| RNA polymerase II [Cochliobolus heterostrophus]
          Length = 1208

 Score = 1059 bits (2739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/826 (61%), Positives = 624/826 (75%), Gaps = 46/826 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 380  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 439

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF KLT+DV  Y+Q+CV+N +D N+Q A+KA  IT+GLKYSLATGNWG Q  AA   AGV
Sbjct: 440  LFLKLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKXAASAXAGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM Y++VGS A PI++F+ +   +  EE      P ATK+FVNG WVG+H + + LV  
Sbjct: 560  SLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTV 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKR-- 290
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  K   
Sbjct: 620  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEIS 679

Query: 291  -DIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
              + A QQ  S   G           GW  L+  G +EY+D EEEET MI+ +  DL + 
Sbjct: 680  NKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEW 739

Query: 338  --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                 RL P+ +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 740  REMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 799

Query: 377  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
            PRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 800  PRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 859

Query: 437  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
            VAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 860  VAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 919

Query: 497  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
            ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 920  LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLRST 979

Query: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
            E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 980  ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTRE 1039

Query: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
            G+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTDVTVD IS+ L   GY
Sbjct: 1040 GVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDVTVDQISQLLEDAGY 1099

Query: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
            Q RGFE MYNGHTG++L   IFLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1100 QKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1159

Query: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
            DGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++
Sbjct: 1160 DGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMS 1205


>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 1729

 Score = 1058 bits (2737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/765 (67%), Positives = 600/765 (78%), Gaps = 15/765 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG  D  ETKKAY+FGYI+HRLL  ALGRR  DDRDHYGNKR DLAG L+GGLFR+
Sbjct: 363  LLPHVGVTDHSETKKAYFFGYIVHRLLQAALGRRELDDRDHYGNKRCDLAGALVGGLFRL 422

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGV 119
            LFRKL +DV+A +QK VD   + NL  A KAK I+ GL+YSLATGNWG A  A  +RAGV
Sbjct: 423  LFRKLIKDVKASLQKDVDKRHEFNLLAAFKAKIISDGLRYSLATGNWGDAKKAHESRAGV 482

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL N+QWG+MCPAETPEGQACGLVKNL
Sbjct: 483  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLQNTQWGVMCPAETPEGQACGLVKNL 542

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS A  I+EFLEEW TEN EE +P  I Q+TKIFVNGCWVGIH     LV+T
Sbjct: 543  ALMAYISVGSPALHIIEFLEEWATENLEETTPQSILQSTKIFVNGCWVGIHAQANELVRT 602

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L +LR+R D++ E+ +V DIR +ELRIY+D GR  RPLF+VE +RL I++  I AL+Q  
Sbjct: 603  LAQLRQRTDISPEISIVPDIRERELRIYSDAGRAMRPLFVVEDERLSIRREHIDALKQAA 662

Query: 300  SPEDGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
              +  G        W +L+  G IEYIDT+EEET MI+M   DL  AR     AY  T+T
Sbjct: 663  QADRAGEHIDNPMRWPELITTGVIEYIDTQEEETRMIAMHPEDLDYARREGRGAYCSTHT 722

Query: 352  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
            HCEI+P++ILGVCASIIPFPDHNQSPRN YQSAMGKQAMG+Y++N+Q R+DT+++ LYYP
Sbjct: 723  HCEINPAMILGVCASIIPFPDHNQSPRNCYQSAMGKQAMGVYISNFQVRLDTMSHTLYYP 782

Query: 412  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
            QKPL TTR+ME+LHF  LPAG+NAIVAI+ YSGYNQEDSV+MNQS+IDRG FRSLF+RSY
Sbjct: 783  QKPLTTTRSMEYLHFDSLPAGMNAIVAISVYSGYNQEDSVVMNQSAIDRGLFRSLFYRSY 842

Query: 472  RDEEKKMGTLV-KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
            +DE K  G  V  E+F +P      GMRH SYDKLD DGL  PGTRVSG+D IIGKTTPI
Sbjct: 843  KDEVKPAGLDVGDEEFEKPSLEIVAGMRHSSYDKLDADGLVAPGTRVSGDDFIIGKTTPI 902

Query: 531  --SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 588
               ++E      RY +RD S +LR +E G+VD V+L+ N DG RFVKVRVR +RIPQIGD
Sbjct: 903  PDEKNELAQTMKRYRKRDASTALRSTENGIVDTVMLSVNEDGHRFVKVRVRGIRIPQIGD 962

Query: 589  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
            KF+SRHGQKGT G+TY QEDMP+  EGITPDII+NPHAIPSRMTIG LIEC+ GKVAA  
Sbjct: 963  KFASRHGQKGTCGITYRQEDMPYNAEGITPDIIINPHAIPSRMTIGHLIECLQGKVAALT 1022

Query: 649  GKEGDATPF-TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            GK GDATPF TDVTV +I+  L +  Y   G E ++NGHTG+++   ++ GPTYYQRLKH
Sbjct: 1023 GKIGDATPFNTDVTVKSIADLLKEFRYHPYGNEVLFNGHTGKKMNTQVYFGPTYYQRLKH 1082

Query: 708  MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 752
            MVDDKIHSR RGP+  LTRQP EGR+RDGGLRFGEMERDC+  HG
Sbjct: 1083 MVDDKIHSRQRGPLTNLTRQPVEGRARDGGLRFGEMERDCL--HG 1125



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 72/83 (86%)

Query: 746  DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 805
            +CMIAHGA+ FL+ERLF+QSD  RVHVC+ CGLIAIANLKKN FECR C+NKT I Q+ +
Sbjct: 1639 NCMIAHGAAQFLRERLFEQSDFSRVHVCDICGLIAIANLKKNEFECRACRNKTQISQIFL 1698

Query: 806  PYACKLLFQELMAMAIAPRMLTK 828
            PYA KLLFQELM+M+IAPR++ +
Sbjct: 1699 PYAAKLLFQELMSMSIAPRLMPR 1721


>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
 gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
          Length = 1177

 Score = 1058 bits (2736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/837 (60%), Positives = 624/837 (74%), Gaps = 17/837 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG     E++KAY+ GY++H+L L ALGR  EDDRDH+G KRLDLAGPL+   F  
Sbjct: 341  LLPHVGVTSGSESRKAYFIGYMVHKLCLGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQ 400

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIK-AKTITSGLKYSLATGNWGQ-ANAAGTRAG 118
             FRK+ +DVR  +Q+ +DNGK+ ++   I+ A  IT  ++Y  ATGNWG+  +    R G
Sbjct: 401  CFRKMMKDVRRLLQRNIDNGKEFDVAGVIRSASYITQTIQYQFATGNWGKDKDGKIIRTG 460

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            VSQVL+RLT+ S LS+LRRLN+P+GREGK AKPRQLHN+ WGM+CPAETPEG + GLVKN
Sbjct: 461  VSQVLSRLTFTSALSYLRRLNTPLGREGKFAKPRQLHNTHWGMICPAETPEGHSVGLVKN 520

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM  I+VG   Y I  FL+EWG ++ +EI P  I +  K+F+NG WVG   D E  + 
Sbjct: 521  LALMCEISVGYRPYAIRTFLDEWGMDSIDEIPPEGIKRKIKVFLNGNWVGCFDDSEDSIS 580

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIAL-- 295
             LR +RR  ++  E  +V D+  +E++++TD GR  RPL+IV E   L IKK  I +L  
Sbjct: 581  NLRMIRRSGEIPYETSIVLDVVNREVKLFTDSGRSMRPLYIVGEDGDLKIKKSHINSLLN 640

Query: 296  -------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD 348
                   +  +   D  W DLV  G IEYID EEEET+MI+M INDL   R      Y  
Sbjct: 641  ENPSFDEKMEDEKHDYTWDDLVNTGIIEYIDCEEEETSMIAMFINDLRIDR-----GYCS 695

Query: 349  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 408
            TYTHCEIHPSLILGVCASIIPFPDHNQSPRN YQSAMGKQAMG+Y +NY  RMDTL YVL
Sbjct: 696  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTSNYNVRMDTLGYVL 755

Query: 409  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 468
            YYPQKPLVTTRAM ++ FR+LPAGIN IV I CYSGYNQEDS+IMNQSSIDRG FRS+FF
Sbjct: 756  YYPQKPLVTTRAMTYMRFRELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFRSVFF 815

Query: 469  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 528
            R+Y  EEK++G+ + E F  P+     G+R G+Y  LD DGL  PG RV G+D+IIGK  
Sbjct: 816  RTYVSEEKQVGSNLIEAFELPNPEEVSGLRFGNYGNLDLDGLIEPGNRVLGDDIIIGKVG 875

Query: 529  PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 588
            PI+ ++   +  + T+RD S+ +R SE G+VD+VLL+TN+ G++F KV+VR++RIP +GD
Sbjct: 876  PINPEDRDTRIQKLTKRDCSVGIRTSEHGVVDEVLLSTNSKGVKFAKVKVRTIRIPHVGD 935

Query: 589  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 648
            KF+SRHGQKGT+G+TY  EDMP+T +GI PDII+NPHAIPSRMTIG LIEC++GK  A  
Sbjct: 936  KFASRHGQKGTIGITYRTEDMPFTQDGIIPDIIMNPHAIPSRMTIGHLIECLLGKACAIQ 995

Query: 649  GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
            G EGDATPFT +TV+ IS  LH  G+Q  G E MYNGHTG+RL + IF+GPTYYQRLKHM
Sbjct: 996  GLEGDATPFTKITVEEISSRLHSSGFQKNGNEVMYNGHTGKRLESRIFIGPTYYQRLKHM 1055

Query: 709  VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 768
            VDDKIH+R RG V +LTRQP EGR+R+GGLRFGEMERDCMI+HGA+  LKERLFDQ DAY
Sbjct: 1056 VDDKIHARARGAVTMLTRQPREGRAREGGLRFGEMERDCMISHGAAKMLKERLFDQCDAY 1115

Query: 769  RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
            RVHVCE CGLI IA+L K  FEC  C NK+ I Q+ +PYACKLL QELMAM+I PR+
Sbjct: 1116 RVHVCEMCGLICIADLGKQHFECNACNNKSRISQICLPYACKLLLQELMAMSIYPRL 1172


>gi|56694296|gb|AAW22888.1| RNA polymerase II second largest subunit [Psilotum nudum]
          Length = 573

 Score = 1058 bits (2736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/574 (86%), Positives = 529/574 (92%), Gaps = 1/574 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQAT
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFV GCWVGIHRDPE+LV+TLR+LRR+VDV TEVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61  KIFVXGCWVGIHRDPELLVRTLRQLRRQVDVXTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVE QRLLIKK  I ALQQ+ES     W+DLVAKGFIEY+DTEEEETTMISM  +D   A
Sbjct: 121 IVENQRLLIKKSHIRALQQKES-TXSAWYDLVAKGFIEYVDTEEEETTMISMNXSDXEAA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R HPEEAY+DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNT QSAMGKQAMGIYVTNYQ
Sbjct: 180 RDHPEEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTXQSAMGKQAMGIYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVL+YPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTLAYVLFYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRS+F+RSYRDEE K GTLVKE+F RP+R     MRHGSYDKL  DGL PPGTRVS
Sbjct: 300 DRGFFRSIFYRSYRDEEXKQGTLVKEEFERPNRETXTNMRHGSYDKLXXDGLTPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKTTP+SQD+   QA RY++RD S  LR SE+GM+DQVLLTTNADGLRFVK+RV
Sbjct: 360 GEDVIIGKTTPLSQDDTGNQAQRYSKRDQSTCLRXSESGMIDQVLLTTNADGLRFVKIRV 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RS+R+PQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGI+PDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSIRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAHMG+EGDATPFTDVTVD+ISKALHKCGYQMRGFETMYNGHT R L AMIF+G
Sbjct: 480 CIMGKVAAHMGREGDATPFTDVTVDSISKALHKCGYQMRGFETMYNGHTXRXLNAMIFIG 539

Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 732
           PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 540 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 573


>gi|47156741|gb|AAT12267.1| RNA polymerase II second largest subunit [Diapensia lapponica]
          Length = 541

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/541 (91%), Positives = 526/541 (97%)

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVIPQATKIFVNG
Sbjct: 1   AETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQATKIFVNG 60

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 284
            WVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQR
Sbjct: 61  SWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQR 120

Query: 285 LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
           LLI+K+DI+ALQQRE+PE+GGWHDLV KGFIEY+DTEEEETTMISMTI DLV AR++P++
Sbjct: 121 LLIRKKDILALQQRETPEEGGWHDLVGKGFIEYVDTEEEETTMISMTIKDLVSARINPDD 180

Query: 345 AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 404
           A ++T+THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTL
Sbjct: 181 ALSETFTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTL 240

Query: 405 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 464
           AYVLYYPQKPLV TRAMEHLHFRQLPAGINA VAIACYSGYNQEDS+IMNQSSIDRGFFR
Sbjct: 241 AYVLYYPQKPLVITRAMEHLHFRQLPAGINATVAIACYSGYNQEDSLIMNQSSIDRGFFR 300

Query: 465 SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 524
           SLFFRSYRDEEKKMGTLVKEDFG P+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII
Sbjct: 301 SLFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 360

Query: 525 GKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           GKTTPI+ D+A GQ SRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIP
Sbjct: 361 GKTTPIAPDDATGQNSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIP 420

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           QIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 421 QIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 480

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           AAHMGKEGDATPFT+VTVDNISKALHKCGYQMRGFETMYNGHTGR+LT+MIFLGPTYYQR
Sbjct: 481 AAHMGKEGDATPFTEVTVDNISKALHKCGYQMRGFETMYNGHTGRQLTSMIFLGPTYYQR 540

Query: 705 L 705
           L
Sbjct: 541 L 541


>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
          Length = 1202

 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/836 (60%), Positives = 624/836 (74%), Gaps = 23/836 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT    E+KK Y+ GY++HRLLL  LGR  +DDRDH+G KRLD+AGPL+   F  
Sbjct: 374  VLPHVGTELGVESKKCYFIGYMVHRLLLAKLGRINQDDRDHFGKKRLDMAGPLMASSFGT 433

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIK-AKTITSGLKYSLATGNWGQA-NAAGTRAG 118
            LFRK+ +D +  +Q  +D G+  ++  AI+ A  IT GL+Y L TGNWG+  +    R G
Sbjct: 434  LFRKMAKDAKRILQHQIDCGRTFDVAGAIRSASQITQGLQYQLLTGNWGKDRDGKVVRTG 493

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            VSQVLNRLT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKN
Sbjct: 494  VSQVLNRLTFASCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKN 553

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM  I+VG A+  I E L E G ++ +E+ P VI    K+F+NG W+G   + + LV 
Sbjct: 554  LALMCSISVGGASSTICELLTELGMDSLDEVPPEVIKDRVKVFINGTWIGCFDEADNLVN 613

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKK------RD 291
            TL   RRR D++ E  ++++I  KE++I+TD GR  RPL +V +  RL +K+      RD
Sbjct: 614  TLLHFRRRCDISHETSIIKEIVSKEVKIFTDAGRAMRPLLVVHDGNRLALKRSHVEKIRD 673

Query: 292  IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
               + +  S     W+ LV  G +EYID EEEE  M+SM + DL     H    Y  TYT
Sbjct: 674  GSYINECSSENTSAWNWLVESGVVEYIDCEEEEMCMVSMFVQDL-----HSNSNYCSTYT 728

Query: 352  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
            HCEIHP +ILGVCASIIPFPD NQSPRNTYQSAMGKQAMG+Y +N+  RMDTL+++LYYP
Sbjct: 729  HCEIHPCMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMGVYSSNFNLRMDTLSHLLYYP 788

Query: 412  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
            QKPLV TRAME L FR+LPAGINAIVAI CYSGYNQEDS+IMNQSSIDRG FRS+F R+Y
Sbjct: 789  QKPLVCTRAMEFLRFRELPAGINAIVAIMCYSGYNQEDSLIMNQSSIDRGLFRSVFNRTY 848

Query: 472  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI- 530
              EEK+ G++  E F RP+     GM+ G Y KLD DGL  PG+RV G+DVIIG+ +P  
Sbjct: 849  VSEEKQQGSVTIEKFERPNPQFVAGMKRGDYSKLDSDGLVEPGSRVLGDDVIIGRISPTL 908

Query: 531  -SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 589
             +QD A        +RD S+ LR SE G+V  VLL+ N+ G RF KV+VRSVRIPQIGDK
Sbjct: 909  PNQDVA-------PKRDCSLCLRRSENGVVHSVLLSVNSKGSRFCKVKVRSVRIPQIGDK 961

Query: 590  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 649
            F+SRHGQKGT+G+TY  EDMP+T +GI PDII+NPHA+PSRMTIG L+EC++GKV A  G
Sbjct: 962  FASRHGQKGTIGITYRMEDMPFTCQGIVPDIIMNPHAVPSRMTIGHLVECLVGKVGAIGG 1021

Query: 650  KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
             EGDATPF+ +TV  I+  LH+ GY+  G E +YNG+TGR L + IF+GPTYYQRLKHMV
Sbjct: 1022 LEGDATPFSSLTVKEIASKLHELGYERHGNEALYNGYTGRLLKSKIFIGPTYYQRLKHMV 1081

Query: 710  DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 769
            +DKIH+R RGPV +LTRQP EGRSRDGGLRFGEMERDCMI+HGA+  LKERLFDQSDAYR
Sbjct: 1082 EDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAAKVLKERLFDQSDAYR 1141

Query: 770  VHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
            VHVC+ CGLI IA+L + SFEC  C NKT+I QV IPYACKLL QELM+MAI P++
Sbjct: 1142 VHVCDMCGLIVIADLNRGSFECSACDNKTNISQVSIPYACKLLLQELMSMAIYPKL 1197


>gi|55583692|gb|AAV53365.1| RNA polymerase II second largest subunit [Hygrophoropsis
           aurantiaca]
          Length = 863

 Score = 1056 bits (2732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/761 (66%), Positives = 604/761 (79%), Gaps = 26/761 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 104 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 163

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 164 LFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGV 223

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 224 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 283

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 284 ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 342

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L+++K+ +  L Q  
Sbjct: 343 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLMLQKKHVKWLNQGY 402

Query: 300 SPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-----PEEAYAD--- 348
             EDG    W  L+  G IE +D EEEET MISMT  DL  +RL      P+    D   
Sbjct: 403 REEDGEEYKWEQLIKGGIIELLDAEEEETVMISMTPEDLENSRLQSAGIDPQSNDVDYDP 462

Query: 349 -----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                      T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+
Sbjct: 463 AARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNF 522

Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSS
Sbjct: 523 LVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 582

Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
           IDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT V
Sbjct: 583 IDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGV 642

Query: 518 SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
           SGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVK
Sbjct: 643 SGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVK 702

Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
           VRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG 
Sbjct: 703 VRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGH 762

Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A +
Sbjct: 763 LVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQV 822

Query: 696 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 736
           +LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDG
Sbjct: 823 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 863


>gi|45545301|gb|AAS67498.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Amanita phalloides]
          Length = 917

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/765 (66%), Positives = 606/765 (79%), Gaps = 27/765 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLL+ AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 155 MLPHVSMSEGSESKKAYFFGYMIHRLLVAALERRELDDRDHFGKKRLDLAGPLLANLFRM 214

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+ KCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  T+AGV
Sbjct: 215 LFRKLTKDVYRYLSKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSTKAGV 274

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 275 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 334

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 335 ALMACISVGSYSAPVIEFLEEWGLESLEENAHSAVP-CTKVFVNGVWMGVHRDPANLVKT 393

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE  +L ++K+ +  L    
Sbjct: 394 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENHQLALQKKHVRWLGN-G 452

Query: 300 SPEDGG---WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA----------- 345
           S +DG    W  LV  G +E +D EEEET MISMT  DL  +RL                
Sbjct: 453 SNDDGDVFRWEHLVKGGIVELLDAEEEETVMISMTPEDLETSRLQQSGVDPNVNDGEYDP 512

Query: 346 --------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                    A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+
Sbjct: 513 AVRLKAGTSAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNF 572

Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSS
Sbjct: 573 LIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 632

Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
           IDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V
Sbjct: 633 IDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNV 692

Query: 518 SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
           +GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +FVK
Sbjct: 693 TGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVK 752

Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
           VRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+I+NPHAIPSRMTIG 
Sbjct: 753 VRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGH 812

Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY  RG E MY+GHTGR+L A I
Sbjct: 813 LVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYHSRGLEVMYHGHTGRKLQAQI 872

Query: 696 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           +LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 873 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 917


>gi|56694330|gb|AAW22905.1| RNA polymerase II second largest subunit [Welwitschia mirabilis]
          Length = 553

 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/556 (90%), Positives = 525/556 (94%), Gaps = 3/556 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALMVYITVGS+A PILEFLEEWGTENFEE+SP+ IP AT
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSSANPILEFLEEWGTENFEEVSPSNIPNAT 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHR PE LVKTL++LRR+VDVN EVGVVRDI L+ELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRYPETLVKTLKQLRRQVDVNPEVGVVRDIPLRELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           +VEKQ+LLIKK  II LQ+R SP D GWHDLVAKGFIEY+DTEEEETTMISMTI DLVQA
Sbjct: 121 VVEKQQLLIKKSHIIRLQERMSP-DEGWHDLVAKGFIEYVDTEEEETTMISMTITDLVQA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R +P EAY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180 RKNPLEAYSHTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRSLFFRSYRDEEK+MGTLVKE+FGRP R NT GMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300 DRGFFRSLFFRSYRDEEKRMGTLVKEEFGRPSRDNTAGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKTTP +QDE  G   RYTRRD S S+RHSE+GMVDQVLLTTN DGLRFVK+R+
Sbjct: 360 GEDVIIGKTTPTNQDENAG--GRYTRRDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRM 417

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RSVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 418 RSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIE 477

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG
Sbjct: 478 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 537

Query: 699 PTYYQRLKHMVDDKIH 714
           PTYYQRLKHMVDDKIH
Sbjct: 538 PTYYQRLKHMVDDKIH 553


>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
            Ankara]
 gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria annulata]
          Length = 1223

 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/853 (59%), Positives = 629/853 (73%), Gaps = 33/853 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHVGT    E+KK +Y GY+IHRLLL  LGR  EDDR+H+G KRLDLAG L+   F  
Sbjct: 379  FLPHVGTEVGSESKKCFYLGYMIHRLLLNQLGRINEDDREHFGKKRLDLAGSLMASSFGT 438

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA-KTITSGLKYSLATG-------------- 105
            LFRKL +DV  +++  +D+G+  ++  AIK+   IT GL+Y L TG              
Sbjct: 439  LFRKLAKDVERFLKNQIDSGRSFDVAGAIKSCSQITQGLQYQLLTGTHSKIIKIKFILLK 498

Query: 106  -----NWGQ-ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 159
                 NWG+  +    R GVSQVLNRLT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ W
Sbjct: 499  KFTIWNWGRDKDGNVVRTGVSQVLNRLTFASYLSHLRRLNTPLGREGKMAKPRQLHNTHW 558

Query: 160  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 219
            GM+CPAETPEGQA GLVKNLALM YI+VGS +  IL+FL E+G ++ +EISP +I    K
Sbjct: 559  GMICPAETPEGQAVGLVKNLALMCYISVGSLSSTILDFLLEFGMDSLDEISPILIKDRVK 618

Query: 220  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 279
            IF+NG WVG+   P+ LV  L  LRR+ ++++E  +VRDI   E++I+TD GR  RPL+I
Sbjct: 619  IFLNGTWVGVFNQPDSLVNVLLELRRKGNISSETSIVRDIMSNEIKIFTDSGRSMRPLYI 678

Query: 280  VEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            VE  RLLI KR    ++  +      W  L+  G +EYID EEEE  MI+M  +DLV   
Sbjct: 679  VENNRLLITKRHANMIENNQLT----WSGLMETGVVEYIDCEEEEICMIAMFPDDLVN-- 732

Query: 340  LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 399
                  Y ++YTHCEIHPS+ILGVCASIIPFPD NQSPRNTYQSAMGKQAMG+Y TNY  
Sbjct: 733  ---NNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMGVYSTNYNL 789

Query: 400  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 459
            RMDTL++VLYYPQKPLV TR+ME L FR+LPAGIN+IVAI CY+GYNQEDS+IMNQSSID
Sbjct: 790  RMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSID 849

Query: 460  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT-MGMRHGSYDKLDDDGLAPPGTRVS 518
            RG FRS+F R+Y  EEK +G+ V E F +P  +   + ++ G Y KLD+DGL  PG+RV 
Sbjct: 850  RGLFRSVFNRTYSSEEKYLGSTVIESFTKPTSTGKFLNLKRGDYSKLDNDGLIEPGSRVL 909

Query: 519  GEDVIIGKTTPISQDEAQGQAS--RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
            G+D+IIG+++P+  D    Q +     R D S  LR +E G+VD VLLT N  G +F KV
Sbjct: 910  GDDIIIGRSSPVESDPNNPQYTPEMNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKV 969

Query: 577  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
            +VRS+R+PQIGDKF+SRHGQKGT+GMT+  ED+P+T +GI PDII+NPHA+PSRMTIG L
Sbjct: 970  KVRSIRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHL 1029

Query: 637  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
            IEC++GKV + +G EGDATPF+ +T++ IS  L KC Y   G E  +NG TG  + + IF
Sbjct: 1030 IECLLGKVGSLVGMEGDATPFSKMTLEQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIF 1089

Query: 697  LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
            +GPTYYQRLKHMV+DKIH+R RGPV +LTRQP EGRSR+GGLRFGEMERDCMI+HGA+  
Sbjct: 1090 VGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKM 1149

Query: 757  LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
            LKERLFDQSDAYRVHVC  CGL+++ANL  +SF+C  C NKT I QV IPYACKLL QEL
Sbjct: 1150 LKERLFDQSDAYRVHVCNFCGLLSVANLNNSSFQCTACDNKTQISQVTIPYACKLLLQEL 1209

Query: 817  MAMAIAPRMLTKE 829
            MAMAI P+++  E
Sbjct: 1210 MAMAIYPKLILTE 1222


>gi|89274900|gb|ABD65891.1| RNA polymerase II second largest subunit, partial [Pycnoporus sp.
           ZW02.30]
          Length = 896

 Score = 1055 bits (2729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/758 (67%), Positives = 609/758 (80%), Gaps = 24/758 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 140 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRM 199

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 200 LFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGV 259

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 260 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 319

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 320 SLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 378

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL-QQR 298
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LL++KR I  L + +
Sbjct: 379 IKKLRRKDDISPEVSVVRDIRERELRLYTDPGRVCRPLFIVENQQLLLQKRHIENLVRGK 438

Query: 299 ESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAY---- 346
           E PE +  W +L+  G IE +D EEEET MI MT  DL  +RL       H +  +    
Sbjct: 439 EDPEFEYKWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADAEFDPSA 498

Query: 347 -------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 399
                  A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  
Sbjct: 499 RLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLV 558

Query: 400 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 459
           RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSID
Sbjct: 559 RMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID 618

Query: 460 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 519
           RG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL++DGL  PGT V+G
Sbjct: 619 RGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEEDGLIAPGTNVNG 678

Query: 520 EDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 577
           ED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E+G+VDQVL+TTNA+G +FVK+R
Sbjct: 679 EDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGIVDQVLITTNAEGQKFVKIR 738

Query: 578 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 637
           VRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+
Sbjct: 739 VRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLV 798

Query: 638 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 697
           EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A ++L
Sbjct: 799 ECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYL 858

Query: 698 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 735
           GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRD
Sbjct: 859 GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 896


>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
          Length = 1185

 Score = 1055 bits (2729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/844 (60%), Positives = 631/844 (74%), Gaps = 28/844 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+G  +   TKK Y+ GY+ +RLL C+LGRR  DDRDHYGNKR+D+AGPLL GLF+ 
Sbjct: 342  LLPHIGITEESLTKKQYFLGYVCNRLLACSLGRRQPDDRDHYGNKRVDMAGPLLAGLFKG 401

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA----GTR 116
             F++L ++ R  +Q  +DNGK+VN+  A K   IT G+KY +ATGNWG   AA     TR
Sbjct: 402  CFKRLVKEFRKSLQDSLDNGKEVNMNTAFKQDFITKGIKYCMATGNWGVGKAAVAGQATR 461

Query: 117  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 176
             GVSQVL+RLT+A+ LSHLRR N+PIG+EGK+A+PRQLHN+QWG++CPAETPEGQACGLV
Sbjct: 462  TGVSQVLSRLTFAAALSHLRRANTPIGKEGKIAQPRQLHNTQWGVVCPAETPEGQACGLV 521

Query: 177  KNLALMVYITVGSAAYPILEFLEEWGTENFEEI-SPAVIPQA--TKIFVNGCWVGIHRDP 233
            KNL+LM Y++VG A+  I+E L+  G E  EE+ SPA+   +  +K+FVNG WVG+  DP
Sbjct: 522  KNLSLMTYVSVGGASQVIIELLQAGGMEELEELASPAICASSRFSKVFVNGVWVGMTDDP 581

Query: 234  EMLVKTLRRLRRRVDVNT---EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR--LLIK 288
            + L  TLR  RR + +     EVGV RDI  +EL I TDYGR  RPL IV+K+   L +K
Sbjct: 582  DNLANTLREQRREMTIGGMIHEVGVARDIGERELFISTDYGRLMRPLLIVDKETGFLNLK 641

Query: 289  KRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD 348
            + +II + Q E      W +++ KGFIEYID  EEET  I+M + D+    L+       
Sbjct: 642  RSNIIHMTQNEQTT---WSEILRKGFIEYIDVMEEETCYIAMLVKDVGSNDLY------- 691

Query: 349  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 408
             YTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY TNYQ R+DTLA+VL
Sbjct: 692  QYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYATNYQVRIDTLAHVL 751

Query: 409  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 468
            YYPQKPLV T +M++L FR+LPAG N IVAIA YSGYNQEDS+IM+QSSIDRG FRS+F+
Sbjct: 752  YYPQKPLVKTHSMDYLKFRELPAGQNLIVAIAVYSGYNQEDSLIMSQSSIDRGMFRSMFY 811

Query: 469  RSYRDEEKKMGTLVKEDFGRPDRSNT-MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 527
            RSY DE+K  G L  E F +P R          +YDKLD DGL  P   V   D+IIGKT
Sbjct: 812  RSYTDEQKTEGVLCLEQFEKPQREELGSASSRVNYDKLDVDGLVFPAQNVEDRDIIIGKT 871

Query: 528  TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD-GLRFVKVRVRSVRIPQI 586
            T ++  +   QA    +RD S  LRH+E G+VDQVLLTTN+D G RFV+++VR+VR+PQI
Sbjct: 872  TLVTNSDDSDQAQIAVKRDSSTRLRHNEHGVVDQVLLTTNSDTGQRFVQIKVRAVRVPQI 931

Query: 587  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
            GDKF+SRHGQKGTVG+TY Q+DMP+T EG++PD+IVNPHAIPSRMTIG LIE ++GKV  
Sbjct: 932  GDKFASRHGQKGTVGITYRQDDMPFTSEGVSPDLIVNPHAIPSRMTIGHLIETLLGKVGC 991

Query: 647  HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
              G EGDATPF +V V ++S  LH  GYQ  G E +YNGHTGR LTA++F GPTYYQRLK
Sbjct: 992  LTGDEGDATPFNEVNVKDVSDMLHSRGYQRHGNERLYNGHTGRPLTALVFFGPTYYQRLK 1051

Query: 707  HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
            HMVDDKIHSR RGP Q+L RQP EGR+RDGGLRFGEMERDCMIAHG+++ L+E+LF QSD
Sbjct: 1052 HMVDDKIHSRARGPTQMLNRQPMEGRARDGGLRFGEMERDCMIAHGSANVLREKLFTQSD 1111

Query: 767  AYRVHVCEHCGLIAIANLKKNSFECRG---CKNKTDIVQVHIPYACKLLFQELMAMAIAP 823
             Y  H+C+ CGLIAIANL  N + C     C+N + I  + IPYA KLLFQELMAM IAP
Sbjct: 1112 GYMTHICQDCGLIAIANLDSNLYRCPNQATCRNSS-IGMIEIPYAAKLLFQELMAMQIAP 1170

Query: 824  RMLT 827
            R++T
Sbjct: 1171 RLMT 1174


>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
 gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
          Length = 1184

 Score = 1055 bits (2729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/852 (60%), Positives = 625/852 (73%), Gaps = 32/852 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVG    CE +KAY+ GY++HRL + ALGR  EDDRDH+G KRLDLAGPL+   F  
Sbjct: 333  VLPHVGVTIGCEFRKAYFIGYMVHRLCMGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQ 392

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIK-AKTITSGLKYSLATGNWGQA-NAAGTRAG 118
             FRK+ +D+R  +Q+ +DNGK+ ++   I+ A  IT  L+Y  ATGNWG+  +    R G
Sbjct: 393  SFRKMMKDMRRLLQRNIDNGKEFDVAGVIRSASYITQTLQYQFATGNWGKDRDGKIVRTG 452

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            V+QVL+RLT+AS LS+LRRLN+P+GREG LAKPRQLHN+ WGM+CPAETPEG A GLVKN
Sbjct: 453  VAQVLSRLTFASALSYLRRLNTPLGREGTLAKPRQLHNTHWGMICPAETPEGHAVGLVKN 512

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM  I+VG   + I  FL+EWG ++ +E+ P  I    K+F+NG WVG   D E  + 
Sbjct: 513  LALMCEISVGYRPFAIRTFLDEWGMDSIDEVPPEDIKDKIKVFLNGNWVGCFDDSEDSIT 572

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQ 297
             LR +RR  ++  E  +V D+  +E++++TD GR  RPL+IV E   L I+K  I  L  
Sbjct: 573  NLRMIRRSGEIPYETSIVLDVVNREVKLFTDAGRSMRPLYIVGEDGELKIRKSHIATLLG 632

Query: 298  RESPE----------------DGG--------WHDLVAKGFIEYIDTEEEETTMISMTIN 333
             + PE                +GG        W DL+  G IEYID EEEET MI+M +N
Sbjct: 633  IKMPENNSNEDMKILSEVDLPEGGISRDSDFTWDDLIKSGIIEYIDCEEEETAMIAMFMN 692

Query: 334  DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 393
            DL  AR      Y  TYTHCEIHPSLILG+CASIIPFPDHNQSPRN YQSAMGKQAMG+Y
Sbjct: 693  DLRDAR-----GYCSTYTHCEIHPSLILGICASIIPFPDHNQSPRNVYQSAMGKQAMGVY 747

Query: 394  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 453
             +NY  RMDTL YVLYYPQKPLVTTRAM ++ FR+LPAGIN IV I CYSGYNQEDS+IM
Sbjct: 748  TSNYNVRMDTLGYVLYYPQKPLVTTRAMTYMRFRELPAGINCIVGIMCYSGYNQEDSLIM 807

Query: 454  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 513
            NQSSIDRG FRS+FFR+Y  EEK++G+ + E F  P+     G+R G+Y  LD DGL  P
Sbjct: 808  NQSSIDRGLFRSVFFRTYVSEEKQIGSNLIEAFELPNPDEVSGLRFGNYGNLDRDGLIEP 867

Query: 514  GTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
            G RV G+D+IIGK  PI  +E   +  R T+RD SI LR SE G+VD+VLL+TN+ G++F
Sbjct: 868  GNRVLGDDIIIGKFGPIPPEERDNRIERLTKRDCSIGLRSSEHGVVDEVLLSTNSKGVKF 927

Query: 574  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
             KV+VR++R+P IGDKF+SRHGQKGT+G+TY  EDMP+T +GI PDII+NPHAIPSRMTI
Sbjct: 928  TKVKVRTIRVPHIGDKFASRHGQKGTIGITYRMEDMPFTQDGIVPDIIMNPHAIPSRMTI 987

Query: 634  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
            G LIECI+GK  A  G EGDATPFT VTV+ IS  LH  G+Q  G E MYNGHTGR+L +
Sbjct: 988  GHLIECILGKTCAIEGMEGDATPFTKVTVEEISNRLHAAGFQRNGNEVMYNGHTGRQLES 1047

Query: 694  MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 753
             IF+GPTYYQRLKHMVDDKIH+R +G + +LTRQP EGRSR+GGLRFGEMERDCMI+HGA
Sbjct: 1048 RIFIGPTYYQRLKHMVDDKIHARAKGAITMLTRQPREGRSREGGLRFGEMERDCMISHGA 1107

Query: 754  SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 813
            +  LKERLFDQ DAYRVHVCE CGLI  A+L K  +EC+ C NK+ I QV +PYACKLL 
Sbjct: 1108 AKMLKERLFDQCDAYRVHVCELCGLICTADLGKQHYECKVCSNKSQISQVCLPYACKLLL 1167

Query: 814  QELMAMAIAPRM 825
            QELMAM+I PR+
Sbjct: 1168 QELMAMSIYPRL 1179


>gi|6606089|gb|AAF19057.1|AF107785_1 DNA-dependent RNA polymerase II RPB140 [Agaricus bisporus]
          Length = 914

 Score = 1055 bits (2728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/764 (67%), Positives = 604/764 (79%), Gaps = 25/764 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 152 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 211

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 212 LFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 271

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 272 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 331

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 332 ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTSP-CTKVFVNGVWMGVHRDPANLVKT 390

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL+ KR I  L    
Sbjct: 391 IKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGS 450

Query: 300 SPE--DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA----- 345
             E  +  W  L+  G IE +D EEEET MISMT  DL  +RL       H  +      
Sbjct: 451 DDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDPA 510

Query: 346 -------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM KQAMGIY+TN+ 
Sbjct: 511 ARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTNFL 570

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 571 IRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 630

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V 
Sbjct: 631 DRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVR 690

Query: 519 GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVKV
Sbjct: 691 GEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKV 750

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           RVR+ RIPQIGDKF+S HGQKGTVG+TY QEDMP+T EGI PD+I+NPHAIPSRMTIG L
Sbjct: 751 RVRATRIPQIGDKFASCHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHL 810

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
           +EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A I+
Sbjct: 811 VECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIY 870

Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 871 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 914


>gi|56694362|gb|AAW22921.1| RNA polymerase II second largest subunit [Pseudotsuga menziesii]
          Length = 554

 Score = 1055 bits (2727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/555 (89%), Positives = 525/555 (94%), Gaps = 1/555 (0%)

Query: 178 NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 237
           NLALMVYITVGS+  PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LV
Sbjct: 1   NLALMVYITVGSSPNPILEFLEEWSTENFEEISPAVIPTATKIFVNGCWVGIHRDPELLV 60

Query: 238 KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 297
           KTLR+LRR+VDVN EVGVVRDIRLKELR+YTDYGRCSRPLF+VEKQRL IKK DI  LQ+
Sbjct: 61  KTLRQLRRQVDVNPEVGVVRDIRLKELRLYTDYGRCSRPLFVVEKQRLSIKKSDITRLQE 120

Query: 298 RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
           R + E+G WHDLV +GFIEY+DTEEEETTMISMTINDLV AR +P EAY+ TYTHCEIHP
Sbjct: 121 RTTTEEG-WHDLVTRGFIEYVDTEEEETTMISMTINDLVSARNNPAEAYSHTYTHCEIHP 179

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVT
Sbjct: 180 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVT 239

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+
Sbjct: 240 TRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKR 299

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
           MGTLVKE+FG P+R NT+ MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++Q+E  G
Sbjct: 300 MGTLVKEEFGCPNRENTLNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQEETSG 359

Query: 538 QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
           Q  RY RRD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQK
Sbjct: 360 QQQRYIRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQK 419

Query: 598 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
           GTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF
Sbjct: 420 GTVGMTYTQEDMPWTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 479

Query: 658 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
           TDVTVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRG
Sbjct: 480 TDVTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRG 539

Query: 718 RGPVQILTRQPAEGR 732
           RGPVQILTRQPAEGR
Sbjct: 540 RGPVQILTRQPAEGR 554


>gi|2736127|gb|AAB94064.1| RPB140 [Marchantia polymorpha]
          Length = 555

 Score = 1055 bits (2727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/556 (89%), Positives = 524/556 (94%), Gaps = 1/556 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALM +ITVGSAA PILEFLEEW TENFEEISPAVIPQ+T
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMAHITVGSAANPILEFLEEWSTENFEEISPAVIPQST 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNGCWVGIHRDPE+LV+TLR+LRR+VDVN EVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61  KIFVNGCWVGIHRDPELLVRTLRQLRRQVDVNPEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVEKQRLLIKK D+ ALQ +E+ E  GWH+LVAKGFIEY+DTEEEETTMISMTI+DLV A
Sbjct: 121 IVEKQRLLIKKSDVRALQLKEASE-SGWHELVAKGFIEYVDTEEEETTMISMTISDLVNA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R +PEEAY+ TYTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180 RNNPEEAYSKTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTLAYVLYYPQKPLVTT+AM HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTLAYVLYYPQKPLVTTQAMAHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRS+F+RSYRDEEKK GTLVKE+F RP+R NT GMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300 DRGFFRSIFYRSYRDEEKKQGTLVKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           GEDVIIGKTTP+ QDE   QA RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK+RV
Sbjct: 360 GEDVIIGKTTPLPQDETGSQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRV 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGRRL A IFLG
Sbjct: 480 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFEVMYNGHTGRRLYAHIFLG 539

Query: 699 PTYYQRLKHMVDDKIH 714
           PTYYQRLKHMVDDKIH
Sbjct: 540 PTYYQRLKHMVDDKIH 555


>gi|89274894|gb|ABD65888.1| RNA polymerase II second largest subunit, partial [Laetiporus
           sulphureus]
          Length = 897

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/760 (66%), Positives = 605/760 (79%), Gaps = 25/760 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL A+ RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 139 MLPHVSMAEGSESKKAYFFGYMIHRLLLAAMERRDLDDRDHFGKKRLDLAGPLLANLFRM 198

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 199 LFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGV 258

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 259 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 318

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 319 SLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHRDPANLVKT 377

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ--Q 297
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LL+ K+ I  L   Q
Sbjct: 378 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLAKKHIQYLNDGQ 437

Query: 298 RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD-- 348
            E  +   W  LV  G IE +D EEEET MI MT  DL  +R+       H  +   D  
Sbjct: 438 DEEGKPYKWDSLVKGGVIELLDAEEEETVMICMTPEDLENSRMQSNTIDSHMNDGEFDPA 497

Query: 349 ----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                     T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+ 
Sbjct: 498 ARLKATTNTHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 557

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 558 VRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 617

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT V+
Sbjct: 618 DRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTGVN 677

Query: 519 GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNA+G +FVK+
Sbjct: 678 GEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKI 737

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHAIPSRMTIG L
Sbjct: 738 RVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHL 797

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
           +EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A ++
Sbjct: 798 VECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 857

Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 736
           LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDG
Sbjct: 858 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 897


>gi|89274904|gb|ABD65893.1| RNA polymerase II second largest subunit, partial [Spongipellis
           pachyodon]
          Length = 901

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/762 (66%), Positives = 608/762 (79%), Gaps = 25/762 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 143 MLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 202

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 203 LFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGV 262

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN  WGM+CPAETPEGQACGLVKNL
Sbjct: 263 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNHHWGMVCPAETPEGQACGLVKNL 322

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + P++EFLEEWG E+ EE   +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 323 SLMSCISVGSFSGPVIEFLEEWGLESLEENVHSPTP-TTKVFVNGVWMGVHRDPVNLVKT 381

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRD R +ELRIYTD GR  RPLFIVE ++L IKK+ I  L+ ++
Sbjct: 382 IKKLRRKDDISPEVSVVRDTRERELRIYTDAGRVCRPLFIVEDEQLAIKKKHIRMLEDKD 441

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL------HPEEAYAD----- 348
           S  +  W D++ KG IE +D EEEET MI MT  DL  +RL        +E+  D     
Sbjct: 442 S--NFAWDDMIKKGIIELLDAEEEETAMICMTPEDLEASRLAGAGMDQEDESEFDPSKRL 499

Query: 349 --------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
                   T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  R
Sbjct: 500 RTTGSSIHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLSR 559

Query: 401 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
           MDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDR
Sbjct: 560 MDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDR 619

Query: 461 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
           G FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V+GE
Sbjct: 620 GLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGE 679

Query: 521 DVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           D+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTNA+G +FVK+ V
Sbjct: 680 DIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNAEGQKFVKIGV 739

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RS R+PQIG KF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHAIPSRMTIG L+E
Sbjct: 740 RSTRVPQIGGKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVE 799

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           C++ K+A   G+EGDATPFT++TV+++S+ L + GYQ RG E MY+GHTGR+L A ++LG
Sbjct: 800 CLLSKLATLTGQEGDATPFTELTVESVSQYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLG 859

Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           PTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 860 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 901


>gi|89274902|gb|ABD65892.1| RNA polymerase II second largest subunit, partial [Sparassis
           crispa]
          Length = 900

 Score = 1053 bits (2724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/763 (66%), Positives = 609/763 (79%), Gaps = 29/763 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 139 MLPHISMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRM 198

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV++ K+ NL  A+K+ TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 199 LFRKLTKDVYRYLQKCVESHKEFNLNLAVKSNTITNGLKYSLATGNWGDQKKSMASKAGV 258

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 259 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 318

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 319 SLMACISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHRDPANLVKT 377

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL---- 295
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LL+ K+ I  L    
Sbjct: 378 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLTKKHIDLLNRSA 437

Query: 296 -QQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP--------EEA 345
            +++  P  G  W +L+  G IE +D EEEET MI MT  DL  +RL          +E 
Sbjct: 438 EEEKALPGSGYKWDNLIKSGVIELLDAEEEETVMICMTPEDLDNSRLQSSGVDPHANDED 497

Query: 346 Y-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 394
           +           A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+
Sbjct: 498 FDPAARLKAVTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYL 557

Query: 395 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 454
           TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMN
Sbjct: 558 TNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMN 617

Query: 455 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 514
           QSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PG
Sbjct: 618 QSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPG 677

Query: 515 TRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLR 572
           T V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E+G++DQVL+TTNADG +
Sbjct: 678 TGVNGEDIIIGKTAPIPPDSEELGQRTRAHTKRDVSTPLKSTESGIIDQVLITTNADGQK 737

Query: 573 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
           FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMT
Sbjct: 738 FVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMT 797

Query: 633 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 692
           IG L+EC++ KVA  +G EGDATPFT++TV+++S+ L + GYQ RG E MY+GHTGR+L 
Sbjct: 798 IGHLVECLLSKVATLIGNEGDATPFTELTVESVSQVLRQKGYQSRGLEVMYHGHTGRKLQ 857

Query: 693 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 735
           A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRD
Sbjct: 858 AQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 900


>gi|46277253|gb|AAS86817.1| RNA polymerase II second largest subunit, partial [Sequoia
           sempervirens]
          Length = 556

 Score = 1053 bits (2722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/559 (89%), Positives = 531/559 (94%), Gaps = 3/559 (0%)

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+TL
Sbjct: 1   LMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRTL 60

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL I+K+DI  LQ   S
Sbjct: 61  RQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIRKQDINNLQA--S 118

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            EDG WH+L+ +G IEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLI
Sbjct: 119 REDG-WHELITQGCIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLI 177

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 178 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 237

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+ GT
Sbjct: 238 MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRAGT 297

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++ GQ S
Sbjct: 298 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSAGQVS 357

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           +Y +RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 358 KYPKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 417

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 418 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 477

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
           TVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 478 TVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 537

Query: 721 VQILTRQPAEGRSRDGGLR 739
           VQILTRQPAEGRSRDGGLR
Sbjct: 538 VQILTRQPAEGRSRDGGLR 556


>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1239

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/846 (60%), Positives = 629/846 (74%), Gaps = 30/846 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+ T      KK+++ GY++++LL   LGR  EDDRD+YG KRLD+AG LL   FR 
Sbjct: 405  FLPHISTLPQDMPKKSFFLGYMVNKLLKAFLGRIDEDDRDYYGKKRLDMAGSLLATNFRQ 464

Query: 61   LFRKLTRDVRAYVQKCVDNGKD-VNLQFAIKAKTITSGLKYSLATGNWGQ-ANAAGTRAG 118
            LFR  T  +R  ++  +D+GK+ + LQ +IK   IT GL+ +LATGNWG+  N    + G
Sbjct: 465  LFRNFTDTMRRILKHEIDSGKEQIVLQNSIKQDIITRGLRTALATGNWGRDKNGDVQKTG 524

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            V+QVLNRLT+AS+LSHLRRLN+PI + GKLAKPRQLHN+ WGM+CPAETPEG ACGLVKN
Sbjct: 525  VAQVLNRLTFASSLSHLRRLNTPIAKTGKLAKPRQLHNTHWGMICPAETPEGAACGLVKN 584

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM +++VGS    ++  LE+ G +  ++++     +  +IFVNG W G H +P+ L+K
Sbjct: 585  LALMTFVSVGSQPSYLISILEDLGVDRLDDMNQVGSGRQVRIFVNGNWFGTHANPDDLIK 644

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
            ++ +LRR   +  E+ +VRD++ KE+R YTD GR  RPLFIV+   + +KK+ I  L++ 
Sbjct: 645  SMLKLRRTHQIPKEIAIVRDLQNKEIRFYTDSGRVQRPLFIVQNNNIKLKKKHISLLEKN 704

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E      + D + +G +E++D EEEET MI+M + DL   +    E    TYTHCEIHPS
Sbjct: 705  EY----NFDDTIKEGLVEFLDVEEEETAMIAMHLQDLKSKK----ENRVTTYTHCEIHPS 756

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +N+  RMDTLA+VLYYPQKPLV T
Sbjct: 757  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNHSIRMDTLAHVLYYPQKPLVCT 816

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            ++M+ LHF++LPAG NAIVAIACY+GYNQEDS+I NQSSIDRG FRS FFR+Y + ++K 
Sbjct: 817  KSMDFLHFKELPAGSNAIVAIACYTGYNQEDSIIFNQSSIDRGIFRSAFFRTYSETQEK- 875

Query: 479  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE---- 534
                 E F  PD     G +HG+YDKLD DGL  PG +VSG+DVIIGKTT I  +E    
Sbjct: 876  ----DERFEIPDFKKCSGRKHGTYDKLDIDGLINPGNQVSGDDVIIGKTTAIKMNENMNG 931

Query: 535  ----AQGQASRY---TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 587
                +QG    +   +RRD S  L+HSETG +DQV+LT N  G RFVK+++RS RIPQIG
Sbjct: 932  NANSSQGADPMFFVKSRRDVSTCLKHSETGKIDQVVLTVNEQGERFVKIKMRSERIPQIG 991

Query: 588  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 647
            DKF+SRHGQKGTVGMTY QEDMP+T EGI PD+I+NPHAIPSRMTIG LIEC+  KVA+ 
Sbjct: 992  DKFASRHGQKGTVGMTYRQEDMPFTREGIVPDLIINPHAIPSRMTIGHLIECLGSKVASL 1051

Query: 648  MGKEGDATPFTDV----TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
             G EGDATPF  V    TV+ ISK LH+CGYQ+RG E MYNG  G+++  MIFLGPTYYQ
Sbjct: 1052 TGTEGDATPFQKVGVKDTVEQISKRLHECGYQLRGNEVMYNGFNGKKMEVMIFLGPTYYQ 1111

Query: 704  RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFD 763
            RLKHMV DKIHSRGRGP QILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERLFD
Sbjct: 1112 RLKHMVADKIHSRGRGPTQILTRQPTEGRSRDGGLRFGEMERDCMISHGAARFLKERLFD 1171

Query: 764  QSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 823
             SD YR+H+CE CGLI + NL +  FEC  C+N + I QV+IPYACKLL QELMAM IAP
Sbjct: 1172 VSDFYRIHMCEVCGLICVGNLSEQRFECYNCQNTSKICQVNIPYACKLLMQELMAMQIAP 1231

Query: 824  RMLTKE 829
            R+   E
Sbjct: 1232 RLKVHE 1237


>gi|56694346|gb|AAW22913.1| RNA polymerase II second largest subunit [Taxus brevifolia]
          Length = 549

 Score = 1052 bits (2720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/552 (90%), Positives = 526/552 (95%), Gaps = 3/552 (0%)

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LVKTL
Sbjct: 1   LMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVKTL 60

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK DI  LQ   S
Sbjct: 61  RQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKADINNLQA--S 118

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            EDG WH+LV +GFIEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLI
Sbjct: 119 REDG-WHELVTQGFIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLI 177

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 178 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 237

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGT
Sbjct: 238 MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGT 297

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDEA GQ S
Sbjct: 298 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAGGQVS 357

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           +YT+RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 358 KYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 417

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 418 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 477

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
           TVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 478 TVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 537

Query: 721 VQILTRQPAEGR 732
           VQILTRQPAEGR
Sbjct: 538 VQILTRQPAEGR 549


>gi|406864058|gb|EKD17104.1| DNA-directed RNA polymerase II subunit RPB2 [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1266

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/812 (61%), Positives = 622/812 (76%), Gaps = 41/812 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+   +  ET+KA++ GY++H++L CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 391  LLPHISQSEGSETRKAFFLGYMVHKMLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRG 450

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFR+LT DV  Y++ CV+N K+ NL   +KA T+T+GLKYSLATGNWG Q  AA + AGV
Sbjct: 451  LFRRLTSDVYKYLKLCVENNKEFNLALGVKATTMTNGLKYSLATGNWGDQKKAASSTAGV 510

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T++STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 511  SQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 570

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LVKT
Sbjct: 571  ALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSPNATKVFVNGVWVGVHRDPGHLVKT 630

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
            ++ LRR   ++ EV ++RDIR +E +I+TD GR  RPLF+V+       K  L++ K  I
Sbjct: 631  VQHLRRSHLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVVDNDVESPNKGNLVLNKDHI 690

Query: 293  IALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L++ +                G+  L+ +G +EY+D EEEET MI MT  DL     +
Sbjct: 691  RRLEEDQHLHANTDPALKDELYFGFQGLINEGVVEYVDAEEEETIMIVMTPEDLDISRQI 750

Query: 337  QA--RLHPEEA-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            QA  ++ P+ +              A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 751  QAGYKIRPDNSGDLNKRVKAPVNPTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 810

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 811  QSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 870

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G    E F +P R++TM ++ G+
Sbjct: 871  YSGYNQEDSVIMNQSSIDRGIFRSLFYRAYTDQEKRIGMNALESFEKPYRNDTMKLKQGT 930

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG--QASRYTRRDHSISLRHSETGMV 559
            YDKLD+DGL  PG RVSG+D+IIGKT P+  D      +   +T+RD S  LR +E G+V
Sbjct: 931  YDKLDEDGLVAPGVRVSGDDIIIGKTAPLPADSQDFGIRNKAHTKRDASTPLRSTENGIV 990

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVLLTTN++G +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD
Sbjct: 991  DQVLLTTNSEGQKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTCQGIVPD 1050

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV+   G EGDATPFT+VTVD++SK L   GY  RGF
Sbjct: 1051 LIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPFTEVTVDSVSKLLRNHGYHSRGF 1110

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGGLR
Sbjct: 1111 EIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLR 1170

Query: 740  FGEMERDCMIAHGASHFLKERLFDQSDAYRVH 771
            FGEMERDCMI+HGA+ FLKERLF+ SDA+RVH
Sbjct: 1171 FGEMERDCMISHGAASFLKERLFEVSDAFRVH 1202


>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1189

 Score = 1050 bits (2716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/832 (60%), Positives = 617/832 (74%), Gaps = 25/832 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHVGT    E+KK +Y GY+IHRLLL  LGR  EDDR+H+G KRLDLAG L+   F  
Sbjct: 379  FLPHVGTEVGSESKKCFYVGYMIHRLLLNQLGRINEDDREHFGKKRLDLAGALMASSFGA 438

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA-KTITSGLKYSLATGNWGQANAAGT-RAG 118
            LFRKL +DV+  +Q  +D+G+  ++  AIK+   IT GL+Y L TGNWG+       R G
Sbjct: 439  LFRKLAKDVKKLLQNQIDSGRSFDVAGAIKSCSQITQGLQYQLLTGNWGRDKEGNVVRTG 498

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            VSQVLNRLT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKN
Sbjct: 499  VSQVLNRLTFASYLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKN 558

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            LALM YI+VGS    IL+FL E+G ++ +EISP +I    KIF+NG W+G+   P+ LV 
Sbjct: 559  LALMCYISVGSMTSTILDFLLEFGMDSLDEISPVLIKDRVKIFLNGTWIGVFNQPDALVN 618

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
             L  LRR+ ++++E  +VRDI   E++I+TD GR  RPL+IVE  RLLI KR  + ++  
Sbjct: 619  LLLELRRKGNISSETSIVRDILSNEIKIFTDSGRSMRPLYIVENNRLLITKRHALMIENN 678

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            +      W  L+  G +EYID EEEE  MI+M  +DL+         Y ++YTHCEIHPS
Sbjct: 679  QL----NWSGLLESGVVEYIDCEEEEICMIAMFPDDLIN-----NNNYCNSYTHCEIHPS 729

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +ILGVCASIIPFPD NQSPRNTYQSAMGKQAMG+Y TNY  RMDTL++VLYYPQKPLV T
Sbjct: 730  MILGVCASIIPFPDQNQSPRNTYQSAMGKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCT 789

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R+ME L FR+LPAGIN+IVAI CY+GYNQEDS+IMNQSSIDRG FRS+F R+Y  EEK +
Sbjct: 790  RSMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYL 849

Query: 479  GTLVKEDFGRPD-RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
            G+ V E F +P   SN + ++ G Y KLD+DGL  PG+R          + P   +    
Sbjct: 850  GSTVIESFTKPTATSNFLNLKRGDYSKLDNDGLIEPGSR----------SDP---NNPNY 896

Query: 538  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
             A    R D S  LR +E G+VD VLLT N  G +F KV+VRSVR+PQIGDKF+SRHGQK
Sbjct: 897  PAEMNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRSVRVPQIGDKFASRHGQK 956

Query: 598  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
            GT+GMT+  ED+P+T EGI PDII+NPHA+PSRMTIG LIEC++GKV A +G EGDATPF
Sbjct: 957  GTIGMTFRMEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGALVGMEGDATPF 1016

Query: 658  TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
            + +T++ IS  L KC Y   G E  +NG TG  + + IF+GPTYYQRLKHMV+DKIH+R 
Sbjct: 1017 SKMTLEQISSRLFKCHYSKYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARA 1076

Query: 718  RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
            RGPV +LTRQP EGRSRDGGLRFGEMERDCMI+HGA+  LKERLFDQSDAYRVHVC  CG
Sbjct: 1077 RGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNLCG 1136

Query: 778  LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            L++IANL  +SF+C  C NKT I QV IPYACKLL QELMAMAI P+++  E
Sbjct: 1137 LLSIANLNNSSFQCTACDNKTQISQVTIPYACKLLLQELMAMAIYPKLVLTE 1188


>gi|120561245|gb|ABM27007.1| RNA polymerase II second largest subunit, partial [Capniomyces
           stellatus]
          Length = 924

 Score = 1050 bits (2716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/764 (65%), Positives = 598/764 (78%), Gaps = 24/764 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPHVGT    ET+K Y+FGY+IHRLLLC L RR +DDRDHYG KR+DLAGPLL  LFR 
Sbjct: 161 FLPHVGTQAHNETRKTYFFGYMIHRLLLCGLERREQDDRDHYGKKRMDLAGPLLAMLFRN 220

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRK+T+D+  Y+QKC+D+ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  A  +R GV
Sbjct: 221 LFRKVTKDMTRYLQKCIDSKREFNLTMAMKSNTITAGLKYSLATGNWGDQKKAMQSRTGV 280

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 281 SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 340

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM +ITVG+ + PIL FLEEW  EN EE++ + I  +TKIFVNG WVGIH++P  LV T
Sbjct: 341 ALMAHITVGTDSGPILLFLEEWAMENLEELAGSSINDSTKIFVNGVWVGIHKEPIRLVST 400

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           L++LRRR++ + EV +VRD+R KELRI TD GR  RPLF+V   RL I K  I A++ RE
Sbjct: 401 LKQLRRRLEFSYEVSIVRDVREKELRILTDSGRVCRPLFVVNNSRLNINKDVIKAIEARE 460

Query: 300 SP--EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYA---------- 347
               E   WHDL+++G IEY+D EEEET MI MT  +L ++RL+ E              
Sbjct: 461 VSDVEAVRWHDLLSEGIIEYLDAEEEETAMIIMTPQELTESRLYVENGIVPAVELDLASR 520

Query: 348 ---------DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                     T+THCEIHPS+ILG+CASI+PFPDHNQSPRNTYQSAMGKQAMGI +T+YQ
Sbjct: 521 VKSKRNIGISTWTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAMGKQAMGIMLTSYQ 580

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTL+ +LYYPQKPL TT +ME+L F  LPAG NAIVAI CYSGYNQEDS+IM+Q+SI
Sbjct: 581 LRMDTLSNILYYPQKPLATTHSMEYLKFSDLPAGQNAIVAILCYSGYNQEDSLIMSQTSI 640

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRS+FFRSY+DEE K+G      F +P R  T+ ++HG+Y+KL++DGL  PGTRV+
Sbjct: 641 DRGLFRSIFFRSYQDEEDKLGMRTMGKFEKPTRETTLRLKHGTYEKLEEDGLIAPGTRVT 700

Query: 519 GEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           G+D+IIGKTTPI  D  + GQ +  +T+ D S  LR +ETG+VDQV+LTTN DG +FVKV
Sbjct: 701 GDDIIIGKTTPIPVDSLELGQRTVTHTKLDASKPLRSTETGIVDQVMLTTNGDGFKFVKV 760

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           R+RS RIPQIGDKF+SRHGQKGT+GMTY  EDMP+T +G+ PD+I+NPHAIPSRMTIG L
Sbjct: 761 RMRSTRIPQIGDKFASRHGQKGTIGMTYRSEDMPFTSQGLVPDLIINPHAIPSRMTIGHL 820

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
           +EC++ K+A  MG   DATPFTDVTVD IS  L   GYQ RGFE MYNGHTGR+L   +F
Sbjct: 821 VECLLSKLATLMGTTADATPFTDVTVDAISHELFNLGYQSRGFEVMYNGHTGRKLYTQVF 880

Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
            GPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDGGLRF
Sbjct: 881 FGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 924


>gi|58618681|gb|AAW80835.1| RNA polymerase II second largest subunit [Cotylidia sp. MB5]
          Length = 892

 Score = 1050 bits (2715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/760 (66%), Positives = 599/760 (78%), Gaps = 28/760 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL R   DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 134 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERPELDDRDHFGKKRLDLAGPLLAGLFRM 193

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K  N+  A+K  TIT+GLKYSLATGNWG Q  +  T+AGV
Sbjct: 194 LFRKLTKDVYRYLQKCVEGHKAFNISLAVKHNTITNGLKYSLATGNWGDQKKSMTTKAGV 253

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 254 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 313

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVNG W+G+HRDP  LVKT
Sbjct: 314 ALMATISVGSLSAPVIEFLEEWGLESLEENAHSPIP-LTKVFVNGVWMGVHRDPANLVKT 372

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L ++K+ +  L Q  
Sbjct: 373 IKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHVKWLNQGY 432

Query: 300 SPEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE---------- 344
             +D       W  LV  G IEY+D EEEET MI MT  DL  +RL  +           
Sbjct: 433 RDDDPAQDPYKWDSLVKGGVIEYLDAEEEETVMICMTPEDLENSRLQQQGIDPHANDGDF 492

Query: 345 ---------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
                      A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+T
Sbjct: 493 DPAARLKSVQNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLT 552

Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
           N+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 553 NFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQ 612

Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
           SSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT
Sbjct: 613 SSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIAPGT 672

Query: 516 RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
            VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN+DG +F
Sbjct: 673 GVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSDGQKF 732

Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
           VKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI
Sbjct: 733 VKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTI 792

Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
           G L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A
Sbjct: 793 GHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQA 852

Query: 694 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 733
            ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRS
Sbjct: 853 QVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 892


>gi|89274896|gb|ABD65889.1| RNA polymerase II second largest subunit, partial [Phaeolus
           schweinitzii]
          Length = 887

 Score = 1048 bits (2711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/755 (65%), Positives = 595/755 (78%), Gaps = 23/755 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   +  E+KKAY+FGY++HRLLL A+ R   DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 134 MLPHISMAEGSESKKAYFFGYMVHRLLLAAMEREDLDDRDHFGKKRLDLAGPLLSNLFRM 193

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q     ++AGV
Sbjct: 194 LFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGNWGDQKRTMASKAGV 253

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 254 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 313

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  ITVG+ + P++EFLEEWG E+ EE + + IP  TK+FVNG W+G+HRDP  LVKT
Sbjct: 314 SLMSCITVGTLSAPVIEFLEEWGLESLEENAHSTIP-CTKVFVNGVWMGVHRDPANLVKT 372

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D+N EV VVRDIR +ELR+YTD GR SRPLFIVE Q+LL  K+ I  +   +
Sbjct: 373 IKKLRRKDDINAEVSVVRDIRERELRVYTDAGRVSRPLFIVENQQLLFTKKHINLMLSTD 432

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP----------------- 342
             +   W  LV  G IE +D EEEET MI MT  DL  +RL                   
Sbjct: 433 EEKKLKWSALVKTGLIEMLDAEEEETVMICMTPEDLENSRLQSMGVDPHANDGDFDPAAR 492

Query: 343 --EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
                 A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  R
Sbjct: 493 LKANPNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVR 552

Query: 401 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
           MDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS+IDR
Sbjct: 553 MDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDR 612

Query: 461 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
           G FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT V+GE
Sbjct: 613 GLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGE 672

Query: 521 DVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           D+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNA+G +FVK+RV
Sbjct: 673 DIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRV 732

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHAIPSRMTIG L+E
Sbjct: 733 RSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVE 792

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           C++ KVA  +G EGDATPFT++TV+ +S  L + GY  RG E MY+GHTGR+L A ++LG
Sbjct: 793 CLLSKVATIIGNEGDATPFTELTVEGVSDVLRQKGYHSRGLEIMYHGHTGRKLQAQVYLG 852

Query: 699 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 733
           PTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRS
Sbjct: 853 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 887


>gi|56694328|gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra distachya]
          Length = 551

 Score = 1048 bits (2709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/554 (89%), Positives = 524/554 (94%), Gaps = 3/554 (0%)

Query: 179 LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
           LALMVYITVGS+A PILEFLEEW TE+FEEISPAVIP ATK+FVNGCWVGIHR+P+ LV 
Sbjct: 1   LALMVYITVGSSANPILEFLEEWSTESFEEISPAVIPTATKVFVNGCWVGIHRNPDQLVN 60

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
           TLR+LRR+VDVN EVGVVRDI LKELR+YTDYGRCSRPLF+V+ QRLLI+K DII LQ+R
Sbjct: 61  TLRQLRRQVDVNPEVGVVRDIPLKELRLYTDYGRCSRPLFVVKNQRLLIRKPDIIRLQER 120

Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            S  D GWHDLVA+GFIEY+DTEEEETTMISMTINDLVQAR HPEEAY  TYTHCEIHPS
Sbjct: 121 TS-SDEGWHDLVARGFIEYVDTEEEETTMISMTINDLVQARRHPEEAYTTTYTHCEIHPS 179

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQ PLVTT
Sbjct: 180 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQXPLVTT 239

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM
Sbjct: 240 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 299

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 538
           G+LVKEDFGRP R NT GMRHGSYDKLD+DGLAPPGTRVSGEDVIIGKTTP++Q+E+ G 
Sbjct: 300 GSLVKEDFGRPSRENTAGMRHGSYDKLDEDGLAPPGTRVSGEDVIIGKTTPVTQEESMG- 358

Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
             RYTRRD S S+RHSE+GMVDQVLLTTN DGLRFVK+R+RSVRIPQIGDKFSSRHGQKG
Sbjct: 359 -GRYTRRDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKG 417

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           TVGMTYTQEDMPWT+EG++PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT
Sbjct: 418 TVGMTYTQEDMPWTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 477

Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
           DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGR
Sbjct: 478 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGR 537

Query: 719 GPVQILTRQPAEGR 732
           GPVQILTRQPAEGR
Sbjct: 538 GPVQILTRQPAEGR 551


>gi|120561261|gb|ABM27015.1| RNA polymerase II second largest subunit, partial [Allomyces
           macrogynus]
          Length = 896

 Score = 1048 bits (2709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/752 (65%), Positives = 597/752 (79%), Gaps = 22/752 (2%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+G    C+T+K+Y+ GY++HRLLL ALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 148 LLPHIGITPGCQTRKSYFIGYMVHRLLLAALGRRQVDDRDHFGKKRLDLAGPLLASLFRT 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            F+KLT+DV  Y   C++ G++ NL  AI + TIT+GL+Y+LATGNWG Q     TRAGV
Sbjct: 208 FFQKLTKDVSRYFTVCIERGREFNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGSA+ PILEFLEEW TEN EEI+ + I   TK+FVNG WVGIHR P+ LV+T
Sbjct: 328 ALMAYISVGSASGPILEFLEEWTTENLEEITASAIGSNTKVFVNGSWVGIHRQPDSLVQT 387

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           L  LRR  D+  EV VVRD+R  ELRIYTD GR  RPLFIV +Q+ L+ +RD +A   R 
Sbjct: 388 LISLRRSGDIMPEVSVVRDVRDNELRIYTDAGRICRPLFIVNEQQQLVLRRDHVA---RL 444

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP--EEAYADT-------- 349
              + GW +L+A G +EY+DTEEEETTMI MT +DL ++R  P  +++  D         
Sbjct: 445 EVGEWGWEELLANGIVEYLDTEEEETTMICMTPDDLAESRGDPIPDKSKLDKTARLKSRK 504

Query: 350 -------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
                  ++HCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q RMD
Sbjct: 505 AGDVCKQWSHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGLYLTNFQLRMD 564

Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
           TLA +LYYPQKPLV TR+M++L FR+LPAG NA+VAIA YSGYNQEDS+IMNQSSIDRG 
Sbjct: 565 TLANILYYPQKPLVATRSMKYLRFRELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGL 624

Query: 463 FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 522
           FRS+++R+Y D+EKK G    E F +P R  T+ +RHGSYDK+++DGL  PGTRV+G+D+
Sbjct: 625 FRSIYYRAYMDQEKKSGFSDVETFEKPARETTLKLRHGSYDKIEEDGLVAPGTRVTGDDI 684

Query: 523 IIGKTTPISQDEAQ-GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 581
           IIGKT P+  D ++ G  +  T++D S SL+ +E G+VD V+LTTN DG +FVKVRVRS 
Sbjct: 685 IIGKTAPLPPDTSEMGARTTQTKKDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRST 744

Query: 582 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 641
           R+PQ+GDKF+SRHGQKGTVGMTY QEDMP++ +G+TPD+IVNPHAIPSRMTIG L+EC++
Sbjct: 745 RVPQMGDKFASRHGQKGTVGMTYRQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLL 804

Query: 642 GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 701
            KV +  G EGDATPFTD+TV  I+  L  CGYQ RGFE MYNGHTG++L A +F GPTY
Sbjct: 805 SKVGSLTGTEGDATPFTDITVQEIADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFGPTY 864

Query: 702 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 733
           YQRLKHMVDDKIHSR RGP+QILTRQP EGRS
Sbjct: 865 YQRLKHMVDDKIHSRARGPLQILTRQPVEGRS 896


>gi|55273999|gb|AAV48870.1| RNA polymerase II second largest subunit [Climacodon
           septentrionalis]
          Length = 886

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/752 (67%), Positives = 597/752 (79%), Gaps = 23/752 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   +  E+KKAY+FGY IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 138 MLPHISMAEGSESKKAYFFGYRIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRM 197

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q      +AGV
Sbjct: 198 LFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKMMSAKAGV 257

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 258 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 317

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 318 SLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHRDPANLVKT 376

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L I K+ I  L  +E
Sbjct: 377 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLTITKKHISQLSDKE 436

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-----LHPEEAYADT----- 349
           S     W DL+  G IE +D EEEET MI MT  DL  AR     L  + A  D      
Sbjct: 437 SGYK--WDDLIKGGVIELLDAEEEETVMICMTPEDLELARNGIDPLQQDAADIDMSVRLK 494

Query: 350 -------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
                  +THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMD
Sbjct: 495 TAQTAHKFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMD 554

Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
           T+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG 
Sbjct: 555 TMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGL 614

Query: 463 FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 522
           FRS+++RSY D EKK G    E+FG+P R  T+ M+HG+YDK++DDGL  PGT V+GED+
Sbjct: 615 FRSIYYRSYMDLEKKSGVQQLEEFGKPTRETTLRMKHGTYDKIEDDGLIAPGTGVNGEDI 674

Query: 523 IIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 580
           IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNA+G +FVK+RVRS
Sbjct: 675 IIGKTAPIPPDSEKLGQRTRQHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRS 734

Query: 581 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 640
            RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC+
Sbjct: 735 TRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECL 794

Query: 641 MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
           + KVA  +G EGDATPFTD+TV+++S+ L K GYQ RG E MY+GHTGR+L A ++LGPT
Sbjct: 795 LSKVATLIGNEGDATPFTDLTVESVSQFLRKEGYQSRGLEVMYHGHTGRKLQAQVYLGPT 854

Query: 701 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 732
           YYQRLKHMVDDKIHSR RGPVQILTRQP EGR
Sbjct: 855 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 886


>gi|55583696|gb|AAV53367.1| RNA polymerase II second largest subunit [Phyllotopsis sp. MB35]
          Length = 889

 Score = 1046 bits (2704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/757 (66%), Positives = 601/757 (79%), Gaps = 25/757 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 134 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 193

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 194 LFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 253

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 254 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 313

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 314 ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 372

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
           +++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L ++K+ +  L    
Sbjct: 373 IKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHVKWLNSGF 432

Query: 298 RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD-- 348
            +  E   W  LV  G IE +D EEEET MISMT  DL  +RL       H  +   D  
Sbjct: 433 NDEGEAFKWEHLVKNGIIELLDAEEEETVMISMTPEDLENSRLQQSGLDPHANDGDFDPA 492

Query: 349 ----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                     T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+ 
Sbjct: 493 ARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 552

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 553 IRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 612

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT V+
Sbjct: 613 DRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPMRDNTLRMKHGTYDKLEDDGLIAPGTGVA 672

Query: 519 GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +FVKV
Sbjct: 673 GEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKV 732

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG L
Sbjct: 733 RVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHL 792

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
           +EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E M++GHTGR+L A ++
Sbjct: 793 VECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMFHGHTGRKLQAQVY 852

Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 733
           LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRS
Sbjct: 853 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 889


>gi|56694348|gb|AAW22914.1| RNA polymerase II second largest subunit [Cunninghamia lanceolata]
          Length = 550

 Score = 1045 bits (2702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/553 (89%), Positives = 526/553 (95%), Gaps = 3/553 (0%)

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+T
Sbjct: 1   ALMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRT 60

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           LR+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL I+K DI  LQ   
Sbjct: 61  LRQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIRKVDINNLQA-- 118

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
           S EDG WH+LV +G IEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSL
Sbjct: 119 SREDG-WHELVTQGCIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSL 177

Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
           ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTR
Sbjct: 178 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTR 237

Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
           AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MG
Sbjct: 238 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMG 297

Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
           TLVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++ GQ 
Sbjct: 298 TLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSGGQV 357

Query: 540 SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           S+YT+RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGT
Sbjct: 358 SKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGT 417

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD
Sbjct: 418 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 477

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 719
           VTVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRG
Sbjct: 478 VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRG 537

Query: 720 PVQILTRQPAEGR 732
           PVQILTRQPAEGR
Sbjct: 538 PVQILTRQPAEGR 550


>gi|55583706|gb|AAV53372.1| RNA polymerase II second largest subunit [Suillus pictus]
          Length = 899

 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/753 (66%), Positives = 597/753 (79%), Gaps = 26/753 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 148 MLPHVSMSEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRM 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  A  ++AGV
Sbjct: 208 LFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKAMSSKAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 328 ALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 386

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ I  L Q  
Sbjct: 387 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGY 446

Query: 300 SPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-----PEEAYAD--- 348
             +DG    W  LV  G IE +D EEEET MI MT  DL  +RL      P +   D   
Sbjct: 447 REDDGEEFKWEQLVKNGIIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHQNDGDYDP 506

Query: 349 -----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                      T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+
Sbjct: 507 AARLKAGINSHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNF 566

Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSS
Sbjct: 567 LVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 626

Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
           IDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT V
Sbjct: 627 IDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGV 686

Query: 518 SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
           SGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVK
Sbjct: 687 SGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVK 746

Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
           VRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI++NPHAIPSRMTIG 
Sbjct: 747 VRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGH 806

Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTG++L A +
Sbjct: 807 LVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQV 866

Query: 696 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
           +LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 867 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 899


>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1198

 Score = 1043 bits (2698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/836 (59%), Positives = 626/836 (74%), Gaps = 25/836 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHV        KK+Y+ GY+++RL+  +LGR +EDDRD+YG KR+D+AG LL GLFR 
Sbjct: 375  FLPHVSMNAEGLYKKSYFVGYMVNRLIQASLGRTSEDDRDYYGKKRMDMAGSLLSGLFRQ 434

Query: 61   LFRKLTRDVRAYVQKCVDNGKDV-NLQFAIKAKTITSGLKYSLATGNWGQANAAGT-RAG 118
            LFR+ T D+  Y+++ +DNGK + +L  AIK+ TI+ GLK +LATGNWG+       + G
Sbjct: 435  LFRQTTDDMLKYLKRDIDNGKQILSLASAIKSDTISRGLKSALATGNWGKDKQGDVQKTG 494

Query: 119  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
            V+QVLNRLT+AS+LSHLRRLN+P+ + GKL KPRQLHNS WGM+CPAETPEGQACGLVKN
Sbjct: 495  VAQVLNRLTFASSLSHLRRLNTPLAKSGKLTKPRQLHNSHWGMVCPAETPEGQACGLVKN 554

Query: 179  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEML 236
            L+LM  ++VGS    ++E LE++G E+   + P ++   +  K+FVNG W+G HR+   L
Sbjct: 555  LSLMSLVSVGSPNKTLIEILEDFGVEDLTSLDPIILQNKELVKVFVNGNWIGCHRNATDL 614

Query: 237  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
            VK ++ +RR   +  E+ +VRDI  KE++ +TD GR  RPLFIVE   L IKK  I  L 
Sbjct: 615  VKNIKDMRRTYTIPKEISIVRDIYTKEIKFFTDSGRVQRPLFIVENSALRIKKFHIPQLI 674

Query: 297  QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIH 356
                     + DL+ +G  E++D EEEET MI+MT++DL       ++A    YTHCEIH
Sbjct: 675  NGSK----NFEDLLQEGLCEFLDVEEEETVMIAMTLDDL-----KGQKAIEYHYTHCEIH 725

Query: 357  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
            PS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y +NYQ RMDTLA+VLYYPQKPLV
Sbjct: 726  PSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTSNYQMRMDTLAHVLYYPQKPLV 785

Query: 417  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
             T++ME LHF++L +G+NA +AIACY+GYNQEDS+++NQS+IDRGFFRS+FFR+Y D  K
Sbjct: 786  CTKSMEFLHFKELSSGLNASIAIACYTGYNQEDSIMLNQSAIDRGFFRSVFFRTYDDCSK 845

Query: 477  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK-----TTPIS 531
            +      E F  PD + T G +HG YDKLD DGL  PG  VSG+D+I+GK     +   +
Sbjct: 846  E-----GEVFAIPDFAKTSGRKHGDYDKLDIDGLICPGVLVSGDDIIVGKVAKMTSNTFN 900

Query: 532  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
            +D     A ++  +D S  L+HSE+G++DQV+LTTN +  +F KV++R+VRIPQIGDKF+
Sbjct: 901  EDLRDSTAKKF--KDCSTPLKHSESGIIDQVILTTNDEAQKFTKVKMRAVRIPQIGDKFA 958

Query: 592  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
            SRHGQKGT GMTY QED+P+T EG+ PD+IVNPHAIPSRMTIG LIEC++ KVA+  G E
Sbjct: 959  SRHGQKGTCGMTYRQEDLPFTREGVVPDMIVNPHAIPSRMTIGHLIECLLSKVASLNGSE 1018

Query: 652  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
            GDATPF    VD IS+ LH+ GYQ  G E MYNG TGR+   +IFLGPT+YQRLKHMV D
Sbjct: 1019 GDATPFCGQNVDEISQLLHELGYQRYGNEVMYNGFTGRKFEVLIFLGPTFYQRLKHMVGD 1078

Query: 712  KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 771
            KIHSRGRGP QILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERLFD SD YRVH
Sbjct: 1079 KIHSRGRGPTQILTRQPTEGRSRDGGLRFGEMERDCMISHGAARFLKERLFDVSDCYRVH 1138

Query: 772  VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
            +C+ CGLI  ANL +  +EC  C N ++I QV IPYA KLL QELMAM +APR+ T
Sbjct: 1139 ICQTCGLICQANLAEQRYECNNCNNTSNICQVKIPYAAKLLIQELMAMQLAPRLRT 1194


>gi|55584694|gb|AAV53578.1| RNA polymerase II second largest subunit [Boletellus projectellus]
          Length = 899

 Score = 1043 bits (2696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/753 (66%), Positives = 599/753 (79%), Gaps = 26/753 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 148 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 208 LFKKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 328 ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 386

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ I  L Q  
Sbjct: 387 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGY 446

Query: 300 SPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-----HPEEAYAD--- 348
             +DG    W  LV  G IE +D EEEET MISMT  DL  +RL     +P++  AD   
Sbjct: 447 RDDDGEEFKWEQLVKSGIIELLDAEEEETVMISMTPEDLENSRLQSAGINPQDHDADHDP 506

Query: 349 -----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                      T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+
Sbjct: 507 AARLKAGITAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNF 566

Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSS
Sbjct: 567 LVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 626

Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
           IDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT V
Sbjct: 627 IDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTNV 686

Query: 518 SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
            GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVK
Sbjct: 687 RGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVK 746

Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
           VRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTIG 
Sbjct: 747 VRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGH 806

Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTG++L A I
Sbjct: 807 LVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQI 866

Query: 696 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
           +LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 867 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 899


>gi|46277255|gb|AAS86818.1| RNA polymerase II second largest subunit, partial [Gnetum gnemon]
          Length = 546

 Score = 1042 bits (2695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/549 (89%), Positives = 523/549 (95%), Gaps = 3/549 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGS+A PILEFLEEWGTENFEE+SP+ IP ATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSSANPILEFLEEWGTENFEEVSPSNIPNATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR PE LVKTL++LRR+VDVN EVGVVRDI L+ELR+YTDYGRCSRPLF+VEKQ+L
Sbjct: 61  WVGIHRYPETLVKTLKQLRRQVDVNPEVGVVRDIPLRELRLYTDYGRCSRPLFVVEKQQL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK DII LQ+R SPE+G WHDLVAKGFIEY+DTEEEETTMISMTI DLVQ+R +P+EA
Sbjct: 121 LIKKADIIRLQERVSPEEG-WHDLVAKGFIEYVDTEEEETTMISMTITDLVQSRKNPKEA 179

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 180 YSNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 239

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 240 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 299

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEK+MGTL+KE+FGRP R NT GMRHGSYDKLDDDGLAPPGTRVSGED+IIG
Sbjct: 300 LFFRSYRDEEKRMGTLIKEEFGRPSRDNTSGMRHGSYDKLDDDGLAPPGTRVSGEDIIIG 359

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTPI+QDE  G   ++TRRD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQ
Sbjct: 360 KTTPINQDENAG--GKFTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQ 417

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTY QEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 418 IGDKFSSRHGQKGTVGMTYCQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 477

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRL
Sbjct: 478 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRL 537

Query: 706 KHMVDDKIH 714
           KHMVDDKIH
Sbjct: 538 KHMVDDKIH 546


>gi|56694356|gb|AAW22918.1| RNA polymerase II second largest subunit [Sequoiadendron giganteum]
          Length = 549

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/552 (89%), Positives = 525/552 (95%), Gaps = 3/552 (0%)

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+TL
Sbjct: 1   LMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRTL 60

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL I+K+DI  LQ   S
Sbjct: 61  RQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIRKQDINNLQ--AS 118

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
            EDG WH+L+ +G IEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLI
Sbjct: 119 REDG-WHELITQGCIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLI 177

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 178 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 237

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+ GT
Sbjct: 238 MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRAGT 297

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
           LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++ GQ S
Sbjct: 298 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSAGQVS 357

Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           +YT+RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 358 KYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 417

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 418 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 477

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
           TVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 478 TVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 537

Query: 721 VQILTRQPAEGR 732
           VQILTRQPAEGR
Sbjct: 538 VQILTRQPAEGR 549


>gi|83415467|gb|ABC17941.1| RNA polymerase II second largest subunit, partial [Endogone
           pisiformis]
          Length = 720

 Score = 1041 bits (2693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/721 (69%), Positives = 584/721 (80%), Gaps = 27/721 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+DLAGPLL  LFRMLF+KLT+DV  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLAT
Sbjct: 2   KRMDLAGPLLASLFRMLFKKLTKDVSKYLQKCIESSREFNLTLAVKSNTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A  ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKAMQSKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YI+VGSAA PI+EFL EW  EN EE+S + IP ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMSYISVGSAAAPIIEFLGEWTMENLEELSASNIPDATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVGIHRDP  LV+TL+ LRR VD++ EV VVRDIR KELR+YTD GRC RPLFIVEKQ
Sbjct: 182 GVWVGIHRDPAELVRTLKELRRCVDISPEVSVVRDIREKELRLYTDAGRCCRPLFIVEKQ 241

Query: 284 RLLIKKRDIIALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
           +LLIKK  I  L   ES ED     GW DLV+ G +EYID EEEET MI MT  DL ++R
Sbjct: 242 KLLIKKDHITKLA--ESREDDTQSYGWQDLVSGGLVEYIDAEEEETAMICMTPEDLSESR 299

Query: 340 ------LHPEE------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                   P+E             YA T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 300 EMAETGFAPKERDVASRVKSQNSGYAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 359

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSA       IY+TNYQ RMDTLA +LYYPQKPLVTTR+ME+L FR+LPAG NAIVAI C
Sbjct: 360 QSAXXXXXXXIYLTNYQVRMDTLANILYYPQKPLVTTRSMEYLRFRELPAGQNAIVAILC 419

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRSLFFRSY D EKK+G +V E+F +P R  T+ ++HG+
Sbjct: 420 YSGYNQEDSVIMNQSSIDRGLFRSLFFRSYMDAEKKVGMMVMEEFEKPTRDTTLRLKHGT 479

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS-RYTRRDHSISLRHSETGMV 559
           Y+KL++DGL  PGTRVSGED+IIGKT PI  D E  GQ +  +++RD S  LR +ETG+V
Sbjct: 480 YEKLEEDGLIAPGTRVSGEDIIIGKTAPIPPDSEELGQRTGTHSKRDASTPLRSTETGIV 539

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQV++TTN +GL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP++ EG+TPD
Sbjct: 540 DQVMVTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPD 599

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMTIG L+EC++GKV+   G EGDATPFTDVTV+ IS+AL    YQ RGF
Sbjct: 600 LIINPHAIPSRMTIGHLVECLLGKVSTLTGNEGDATPFTDVTVEAISQALKAQNYQQRGF 659

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
           E MYNGHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDGGLR
Sbjct: 660 EVMYNGHTGRKLAAQVYLGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLR 719

Query: 740 F 740
           F
Sbjct: 720 F 720


>gi|89274890|gb|ABD65886.1| RNA polymerase II second largest subunit, partial [Ganoderma
           tsugae]
          Length = 883

 Score = 1041 bits (2692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/751 (66%), Positives = 599/751 (79%), Gaps = 24/751 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 134 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRM 193

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ N+  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 194 LFRKLTKDVYRYLQKCVETHKEFNISLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGV 253

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 254 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 313

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + P++EFLEEWG E+ EE + A  P  TK+FVNG W+G+HRDP  LV T
Sbjct: 314 SLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP-CTKVFVNGVWMGVHRDPVKLVST 372

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL-QQR 298
           LR+LRR+ D+N EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LLI+K+ I +L + +
Sbjct: 373 LRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKKHIESLVRAK 432

Query: 299 ESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEE------ 344
           E P     W  L+  G IE +D EEEET MI MT  DL  +RL       H +E      
Sbjct: 433 EDPTLSYNWDSLLKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADEENDPSA 492

Query: 345 -----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 399
                  A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN+  
Sbjct: 493 RLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLI 552

Query: 400 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 459
           RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSID
Sbjct: 553 RMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID 612

Query: 460 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 519
           RG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V+G
Sbjct: 613 RGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNG 672

Query: 520 EDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 577
           ED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E G+VDQVL+TTNA+G +FVK+R
Sbjct: 673 EDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIR 732

Query: 578 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 637
           VRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+
Sbjct: 733 VRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLV 792

Query: 638 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 697
           EC++ K+A  +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A ++L
Sbjct: 793 ECLLSKLATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVYL 852

Query: 698 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
           GPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 853 GPTYYQRLKHMVDDKIHSRARGPVQILTRQP 883


>gi|68131884|gb|AAY85220.1| RNA polymerase II second largest subunit [Berberis nervosa]
          Length = 540

 Score = 1041 bits (2691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/541 (91%), Positives = 518/541 (95%), Gaps = 2/541 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISP+VIP A KIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPSVIPTAHKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR+PE+LVKTLR+LRR+VDVNTEVG++RD  LKELR+YTDYGRCSRPLFIVE QRL
Sbjct: 61  WVGIHRNPELLVKTLRQLRRQVDVNTEVGIIRDFSLKELRLYTDYGRCSRPLFIVENQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+DI ALQQRES ++GGWHDLVAKG+IEY+DTEEEETTMISMTI+DLV AR +P E 
Sbjct: 121 LIKKKDIRALQQRESLDEGGWHDLVAKGYIEYVDTEEEETTMISMTIDDLVNARTNPNET 180

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y   YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 181 Y-QLYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 239

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 240 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 299

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 300 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 359

Query: 526 KTTPISQDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           KTTPI+ DE QG  AS+YT+RDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIP
Sbjct: 360 KTTPIAPDETQGGVASQYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIP 419

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           QIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 420 QIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 479

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQR
Sbjct: 480 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQR 539

Query: 705 L 705
           L
Sbjct: 540 L 540


>gi|443919777|gb|ELU39849.1| DNA-directed RNA polymerase II [Rhizoctonia solani AG-1 IA]
          Length = 1179

 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/784 (64%), Positives = 605/784 (77%), Gaps = 36/784 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+   +  ETKKA++FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 396  MLPHISMAEGSETKKAFFFGYMIHRLLLAALDRRELDDRDHFGKKRLDLAGPLLASLFRM 455

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKLT+D       CV++ ++  L+ A+KA TIT+GLKYSLATGNWG Q  +   +AGV
Sbjct: 456  LFRKLTKD-------CVESNREFQLRLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGV 508

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 509  SQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 568

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEE-ISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            +LM  I+VGS + P++EFLEEWG E+ EE ++      ATK+FVNG W+GIHRD   LVK
Sbjct: 569  SLMSCISVGSLSGPVIEFLEEWGLESLEENVATGNSASATKVFVNGVWLGIHRDAPNLVK 628

Query: 239  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQ 297
            TL RLRR   +N+EV +VRDIR KELRIYTD GR  RPLFIV E+Q+L +KK+ +  LQ 
Sbjct: 629  TLHRLRRMDHINSEVSIVRDIREKELRIYTDAGRICRPLFIVDEQQKLTLKKKHVEWLQN 688

Query: 298  --RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD------- 348
               E  ++  W  LV +G IE +D +EEET MISMT  DL  +R      Y         
Sbjct: 689  GVDEEGQEFKWKQLVKRGVIELLDADEEETVMISMTPEDLENSRRIEGGGYVSNVNDPDW 748

Query: 349  ---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 393
                           T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 749  DPSGTARVKSVPNIHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIY 808

Query: 394  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 453
            +TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIM
Sbjct: 809  LTNYQIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIM 868

Query: 454  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 513
            NQSSIDRG FRS+++RSY D EKK G L  E+F +P R  T+ M+HG+YDKL+ DG   P
Sbjct: 869  NQSSIDRGLFRSMYYRSYMDIEKKAGVLNLEEFEKPTRDTTLRMKHGTYDKLEADGFIAP 928

Query: 514  GTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGL 571
            GT V+GED+IIGKT P+  D E  GQ +R +T+RD S  L+ +E G+VDQVL+TTN +G 
Sbjct: 929  GTGVTGEDIIIGKTAPLQADSEELGQRTRSHTKRDVSTPLKSTENGIVDQVLITTNHEGH 988

Query: 572  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 631
            +FVKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+I+NPHAIPSRM
Sbjct: 989  KFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRM 1048

Query: 632  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
            TIG L+EC++ KVA  +G EGDATPFT++TVD++S+ L + GYQ RG E MY+GHTG++L
Sbjct: 1049 TIGHLVECLLSKVATLLGNEGDATPFTELTVDSVSQLLQQKGYQSRGLEVMYHGHTGKKL 1108

Query: 692  TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
             A ++ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEME    +A 
Sbjct: 1109 QAQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMEVRLRLAQ 1168

Query: 752  GASH 755
               H
Sbjct: 1169 HYFH 1172


>gi|6606091|gb|AAF19058.1|AF107786_1 DNA-dependent RNA polymerase II RPB140, partial [Neolecta
           vitellina]
          Length = 930

 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/774 (63%), Positives = 601/774 (77%), Gaps = 34/774 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPHV   +  E++KA++ GY++HRLLL AL RR +DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 157 LLPHVSQTEGYESRKAFFLGYMVHRLLLVALERREQDDRDHFGKKRLDLAGPLLANLFRM 216

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KL +DV  Y+QKCV+N ++ NL  A+KA TIT GLKYSLATGNWG Q  AA  + GV
Sbjct: 217 LFKKLYKDVYRYMQKCVENNREFNLTLAVKAPTITQGLKYSLATGNWGEQKKAAQAKVGV 276

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 277 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 336

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VG  + P++EFLEEWG E+ E+ SP+  P  TKIFVNG W+G+HRD   LV T
Sbjct: 337 ALMSYISVGGPSAPLIEFLEEWGMESLEDYSPSSTPNTTKIFVNGVWLGVHRDAGSLVNT 396

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRRVD++ E+ +VRDIR +ELR++TD GR  RPLFIV+       K  L+++++ +
Sbjct: 397 VRNLRRRVDISPEITIVRDIRERELRLFTDAGRVMRPLFIVDNDEHSPRKNFLMLQRQHV 456

Query: 293 IALQQR----ESPEDGGWH--DLVAKGFIEYIDTEEEETTMISMTINDLVQAR-----LH 341
             + +     E P+   W+   L+  G IEYID EEEET MI+MT  DL   R       
Sbjct: 457 ETINEHKDNPEIPDHERWNFSKLIENGIIEYIDAEEEETAMIAMTRKDLESWRKMKEGFQ 516

Query: 342 PEEAYADT-------------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
            EE +                YTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 517 IEEEFDPASRVEPPPNPNIAMYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQ 576

Query: 389 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
           AMG+++TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR LPAG NAIVAI CYSGYNQE
Sbjct: 577 AMGVFLTNYQLRMDTMANILYYPQKPLATTRSMEYLKFRDLPAGQNAIVAILCYSGYNQE 636

Query: 449 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
           DSVIMNQSSIDRG FRS+F+R Y D+EKK+G  V E+F +P R  T+ ++HG+Y+KL++D
Sbjct: 637 DSVIMNQSSIDRGLFRSMFYRCYNDQEKKIGMQVMEEFEKPTRQTTLRLKHGTYEKLEED 696

Query: 509 GLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 566
           GL  PG RVSGED+IIGKT PIS D  E   + S +T+RD S  LR +E G+VD V++TT
Sbjct: 697 GLIAPGIRVSGEDIIIGKTAPISPDTQELGQRTSHHTKRDVSTPLRSTENGIVDHVVVTT 756

Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           N +GL+FVKVR+RS R+PQIGDKF+SRHGQKGT+G+TY  EDMP++ +G+ PD+I+NPHA
Sbjct: 757 NQEGLKFVKVRMRSTRVPQIGDKFASRHGQKGTIGITYRHEDMPFSAQGVVPDLIINPHA 816

Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
           IPSRMT+  LIEC + KV+A  G EGDATPFT+VTV+ +S+ L   G+Q RGFE MYNGH
Sbjct: 817 IPSRMTVAHLIECQLSKVSAMGGYEGDATPFTEVTVEQVSQQLRNQGFQSRGFEVMYNGH 876

Query: 687 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           TG++L A +FLGPTYYQRLKHMVDDKIH+R RGPVQILTRQP EGRSRDGGLRF
Sbjct: 877 TGKKLMAQVFLGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRF 930


>gi|120561249|gb|ABM27009.1| RNA polymerase II second largest subunit, partial [Mucor hiemalis]
          Length = 884

 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/731 (66%), Positives = 587/731 (80%), Gaps = 24/731 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPHVGT    ET+K+Y+FGY+IHRLLL AL RR  DDRDHYG KR+DLAG L+ GLFR+
Sbjct: 156 LLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGVLMSGLFRL 215

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+DV  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  AA  RAGV
Sbjct: 216 LFKKLTKDVAKYLQKCIESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAAQARAGV 275

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 276 SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 335

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGSAA P++ FLEEW  EN EE+S   I  ATK+FVNG W+GIHRDP  L+ +
Sbjct: 336 ALMSYISVGSAATPLIMFLEEWAMENLEELSATSIADATKVFVNGVWIGIHRDPGELINS 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           L+++RR VD++ EV +VRDIR KELR+YTD GRC RPLF+VE Q+L + +  I+ +Q  E
Sbjct: 396 LKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLRLNREHIMRIQDTE 455

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE--------------- 344
             +D GW D++A G +EY+D +EEET MI MT  DL ++R+  +                
Sbjct: 456 --DDFGWQDMIADGIVEYVDADEEETAMICMTPEDLAESRMTAQYGAPLQETRDLASRVK 513

Query: 345 ----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
               +Y+ T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q R
Sbjct: 514 SQTGSYSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQTR 573

Query: 401 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
           MDTLA +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDR
Sbjct: 574 MDTLANILYYPQKPLTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDR 633

Query: 461 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
           G FRSLFFR+Y D EKK G +  E+F +P R +T+ ++HG+Y+KL+DDGL  PGTRVSG+
Sbjct: 634 GLFRSLFFRTYMDAEKKAGMMFMEEFEKPTRDSTLRLKHGTYEKLEDDGLIAPGTRVSGD 693

Query: 521 DVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           D+IIGKT PI  D E  GQ  + + +RD S  LR +ETG+VDQV+LTTN DGL+FVKVRV
Sbjct: 694 DIIIGKTAPIPADSEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRV 753

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RS R+PQ+GDKF+SRHGQKGT+GMTY QED P++ EGITPD+I+NPHAIPSRMTIG +IE
Sbjct: 754 RSTRVPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIE 813

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           C++GKV+   G EGDATPFTDVTV+ IS+AL   GYQ RGFE MYNG TGR+L   +FLG
Sbjct: 814 CLLGKVSTLTGNEGDATPFTDVTVEAISQALQAQGYQSRGFEVMYNGFTGRKLNVQVFLG 873

Query: 699 PTYYQRLKHMV 709
           PTYYQRLKHMV
Sbjct: 874 PTYYQRLKHMV 884


>gi|6606137|gb|AAF19081.1|AF107809_1 DNA-dependent RNA polymerase II RPB140, partial [Peziza
           quelepidotia]
          Length = 927

 Score = 1038 bits (2685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/772 (63%), Positives = 608/772 (78%), Gaps = 32/772 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  ET+KA++ GY++H++LLCAL R+  DDRDH+G KRLDLAGPLL GLFR 
Sbjct: 156 FLPHISQKEGSETRKAFFLGYMVHQMLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRT 215

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+DV  Y+QKCV++ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  AA  RAGV
Sbjct: 216 LFKKLTKDVYKYLQKCVESSREFNLTLAVKSTTITNGLKYSLATGNWGEQKKAASARAGV 275

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLR  N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 276 SQVLNRYTFASTLSHLRGTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 335

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM Y++VGS A PI++F+ +   E  EE  P+  P ATKIFVNG WVGIHRDP  +V+T
Sbjct: 336 ALMSYVSVGSPADPIIDFMLQRNMEVLEEYEPSRSPNATKIFVNGVWVGIHRDPGFIVRT 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +++LRR+  +  EV +++DIR +E +I+TD GR  RPLF+V+       +  L+++K  I
Sbjct: 396 IQKLRRQNHIGHEVSLIQDIRNREFKIFTDAGRICRPLFVVDNDPASPRRGELVLQKHHI 455

Query: 293 IALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----------VQ 337
             L+  +   D     GW  L++ G +EYID EEEET MI MT  DL           +Q
Sbjct: 456 EKLEDDKDITDDEQRYGWQGLISDGVVEYIDAEEEETVMIVMTPEDLETSRQFHAGYEIQ 515

Query: 338 ARLHPEE-------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
             + P +        YA T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 516 QEIDPAQRVKAAVNKYAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 575

Query: 391 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 450
           G+++TNY+ RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDS
Sbjct: 576 GVFLTNYRERMDTMANILYYPQKPLGTTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDS 635

Query: 451 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 510
           VIMNQSSIDRG FRSLFFR+Y D+EK++G  V E+F +P R NT+ ++HG+YDKLDDDGL
Sbjct: 636 VIMNQSSIDRGLFRSLFFRTYMDQEKRIGMSVVEEFEKPTRGNTLRLKHGTYDKLDDDGL 695

Query: 511 APPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 568
             PG RVSGED+IIGKT PI+ ++ + GQ +++ T+RD S  LR +E G+VDQV++TTN 
Sbjct: 696 VAPGVRVSGEDIIIGKTAPIAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQ 755

Query: 569 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
           +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIP
Sbjct: 756 EGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIP 815

Query: 629 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 688
           SRMTI  LIEC + KV++  G EGDATPFTDVTVD++SK L + GYQ RGFE MYNGHTG
Sbjct: 816 SRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSKLLREHGYQSRGFEIMYNGHTG 875

Query: 689 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           R+L A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGLRF
Sbjct: 876 RKLVAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 927


>gi|55273987|gb|AAV48864.1| RNA polymerase II second largest subunit [Albatrellus higanensis]
          Length = 913

 Score = 1038 bits (2684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/776 (64%), Positives = 601/776 (77%), Gaps = 46/776 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 139 MLPHVSMNEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRM 198

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 199 LFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGV 258

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 259 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 318

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 319 SLMSVISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 377

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR- 298
           +++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L+I+K+ I  L +  
Sbjct: 378 IKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLVIQKKHIKMLTEAA 437

Query: 299 -----------------ESPEDGG--------WHDLVAKGFIEYIDTEEEETTMISMTIN 333
                            E P D          W  LV  G IE +D EEEET MI MT  
Sbjct: 438 DKSKQDEEEEREKAARGEPPMDPDGEKKPEYTWDHLVRGGLIELLDAEEEETVMICMTPE 497

Query: 334 DLVQARLH-----PEEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
           DL  +R       P E +           A T+THCEIHPS+ILGVCASIIPFPDHNQSP
Sbjct: 498 DLYNSRTDEAQSDPNEEFDPATRLKARTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSP 557

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA+V
Sbjct: 558 RNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAVV 617

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M
Sbjct: 618 AILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRENTLRM 677

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
           +HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ ++ ++RRD S  L+ +E
Sbjct: 678 KHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTKTHSRRDVSTPLKSTE 737

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
           +G++DQVLLTTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+ Y QEDMP+T EG
Sbjct: 738 SGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEG 797

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           ITPD+I+NPHAIPSRMTIG L+EC++ KVA  +G+EGDATPFTD+TV+++S  L + GYQ
Sbjct: 798 ITPDLIINPHAIPSRMTIGHLVECLLSKVATLLGQEGDATPFTDLTVESVSHFLREKGYQ 857

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 731
            RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EG
Sbjct: 858 SRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEG 913


>gi|56694300|gb|AAW22890.1| RNA polymerase II second largest subunit [Anemia phyllitidis]
          Length = 549

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/550 (88%), Positives = 521/550 (94%), Gaps = 1/550 (0%)

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQA GLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVN
Sbjct: 1   PAETPEGQAWGLVKNLALMAYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVN 60

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           GCWVGIHR+P++LVKTLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQ
Sbjct: 61  GCWVGIHREPDLLVKTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQ 120

Query: 284 RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 343
           RLLIKK DI ALQ +++ E  GWHDLV KGFIEY+DTEEEETTMISMTI+DLV +R HPE
Sbjct: 121 RLLIKKSDIRALQSKDTAE-VGWHDLVTKGFIEYVDTEEEETTMISMTISDLVNSRNHPE 179

Query: 344 EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 403
           EAY+DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDT
Sbjct: 180 EAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDT 239

Query: 404 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 463
           LAYVLYYPQKPLVTTRAMEHLHFR LPAGINA+VAIACYSGYNQEDSVIMNQSS+DRGFF
Sbjct: 240 LAYVLYYPQKPLVTTRAMEHLHFRHLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFF 299

Query: 464 RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 523
           RS+F+RSYRDEEKK GTLVKE+F RP+R  T+GMRHGSY+KLDDDGLAPPGTRVSGEDVI
Sbjct: 300 RSIFYRSYRDEEKKQGTLVKEEFERPNREATLGMRHGSYEKLDDDGLAPPGTRVSGEDVI 359

Query: 524 IGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 583
           IGKTTP+ QD+   QA RY++RD S  LRHSE+GM+DQVLLTTN++GLRFVK+RVRS+RI
Sbjct: 360 IGKTTPLPQDDTGSQAQRYSKRDQSTCLRHSESGMIDQVLLTTNSEGLRFVKIRVRSIRI 419

Query: 584 PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 643
           PQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGK
Sbjct: 420 PQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGK 479

Query: 644 VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           VAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFETMYNGH+GRRL+AMIFLGPTYYQ
Sbjct: 480 VAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFETMYNGHSGRRLSAMIFLGPTYYQ 539

Query: 704 RLKHMVDDKI 713
           R KHMVDDKI
Sbjct: 540 RPKHMVDDKI 549


>gi|89274898|gb|ABD65890.1| RNA polymerase II second largest subunit, partial [Polyporus
           squamosus]
          Length = 898

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/760 (66%), Positives = 608/760 (80%), Gaps = 25/760 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 140 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRM 199

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  ++QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +   +AGV
Sbjct: 200 LFRKLTKDVYRHLQKCVEMNKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGV 259

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 260 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 319

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + P++EFLEEWG E+ EE + A  P  TK+FVNG W+G+HRDP  LV+T
Sbjct: 320 SLMSCISVGSLSAPVIEFLEEWGLESLEENTHASTP-CTKVFVNGVWMGVHRDPAGLVRT 378

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL-QQR 298
           LRRLRR+ D+N EV VVRDIR +ELR+YTD GR  RPLFIVE+Q+LL++K+ I  L + +
Sbjct: 379 LRRLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVEEQQLLVQKKHIENLVRSK 438

Query: 299 ESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD-- 348
           E P  +  W +++ +G IE +D EEEET MI MT  DL  +RL       H +E + D  
Sbjct: 439 EDPSYEYNWDNMIKEGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADEEHVDPS 498

Query: 349 ----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                     T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+ 
Sbjct: 499 ARLKAPTFSHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 558

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 559 VRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 618

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL++DGL  PGT V+
Sbjct: 619 DRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLENDGLIAPGTNVN 678

Query: 519 GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E G+VDQVL+TTNA+G +FVK+
Sbjct: 679 GEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKI 738

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L
Sbjct: 739 RVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHL 798

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
           +EC++ K+A  +G EGDATPFT++TV+ +S  L + GYQ RG E MY+GHTGR+L A ++
Sbjct: 799 VECLLSKLATLIGNEGDATPFTNLTVETVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 858

Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 736
           LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDG
Sbjct: 859 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 898


>gi|83415489|gb|ABC17952.1| RNA polymerase II second largest subunit, partial [Umbelopsis
           ramanniana]
          Length = 717

 Score = 1033 bits (2671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/718 (67%), Positives = 580/718 (80%), Gaps = 24/718 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+DLAGPL+  LFRMLF+KLT+DV  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLAT
Sbjct: 2   KRMDLAGPLMASLFRMLFKKLTKDVAKYLQKCIESSREFNLTLAVKSSTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A  ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ W M+C
Sbjct: 62  GNWGDQKKAMQSKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWDMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YI+VGSAA P++ FLEEW  EN EE+S + IP ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMSYISVGSAAAPLILFLEEWAMENLEELSASNIPDATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVGIHRDP  L+ +L+++RR VD++ EV +VRDIR KELR+YTD GRC RPLFIVE Q
Sbjct: 182 GVWVGIHRDPGELITSLKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFIVEDQ 241

Query: 284 RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 343
           +L + K  +  LQ  +S  +  W DL++ G IEYID EEEET MI MT  DL ++R   E
Sbjct: 242 QLKLTKDHVALLQDPDS--NYRWQDLISDGIIEYIDAEEEETAMICMTPEDLAESRYSAE 299

Query: 344 -------------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
                                Y+ T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 300 YGKPLQSDRDVASRLKTQQSGYSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 359

Query: 385 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
           MGKQAMG+Y+TNYQ RMDTLA +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSG
Sbjct: 360 MGKQAMGVYLTNYQVRMDTLANILYYPQKPLTTTRSMEFLRFRELPAGQNAIVAILCYSG 419

Query: 445 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
           YNQEDSVIMNQSSIDRG FRSLF R+Y D EKK G +  E+F +P R NT+ ++HG+Y+K
Sbjct: 420 YNQEDSVIMNQSSIDRGLFRSLFLRTYMDAEKKAGMMFMEEFEKPTRDNTLRLKHGTYEK 479

Query: 505 LDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQV 562
           L++DGL  PGTRVSG+D+IIGKT PI  D E  GQ ++ + +RD S  LR +ETG+VDQV
Sbjct: 480 LEEDGLIAPGTRVSGDDIIIGKTAPIPADSEELGQRTKGHNKRDASTPLRSTETGIVDQV 539

Query: 563 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 622
           ++TTN DGL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY  ED+P++ EG+TPDII+
Sbjct: 540 MVTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRHEDLPFSGEGVTPDIII 599

Query: 623 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 682
           NPHAIPSRMTIG L+EC++GKV    G EGDATPFTDVTV+ +S+AL + GYQ RGFE M
Sbjct: 600 NPHAIPSRMTIGHLVECLLGKVPTLTGNEGDATPFTDVTVEAVSQALAEQGYQQRGFEVM 659

Query: 683 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           YNGHTGR+L A +FLGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 660 YNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 717


>gi|88976158|gb|ABD59039.1| RNA polymerase II second largest subunit, partial [Macrolepiota
           dolichaula]
          Length = 882

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/749 (66%), Positives = 594/749 (79%), Gaps = 25/749 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 135 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 194

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 195 LFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 254

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 255 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 314

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 315 ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANLVKT 373

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR- 298
           +++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL++K+ I  L    
Sbjct: 374 IKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQKKHIRWLNSSF 433

Query: 299 -ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA----- 345
            E   +  W  L+  G IE +D EEEET MISMT  DL  +RL       H  +      
Sbjct: 434 DEEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDPA 493

Query: 346 -------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN+ 
Sbjct: 494 ARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFL 553

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 554 IRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 613

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V 
Sbjct: 614 DRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLEDDGLIAPGTGVR 673

Query: 519 GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +FVKV
Sbjct: 674 GEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKV 733

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+++NPHAIPSRMTIG L
Sbjct: 734 RVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHL 793

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
           +EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A ++
Sbjct: 794 VECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 853

Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILT 725
           LGPTYYQRLKHMVDDKIHSR RGPVQILT
Sbjct: 854 LGPTYYQRLKHMVDDKIHSRARGPVQILT 882


>gi|83415483|gb|ABC17949.1| RNA polymerase II second largest subunit, partial [Mortierella
           verticillata]
          Length = 721

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/720 (68%), Positives = 584/720 (81%), Gaps = 24/720 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+DLAGPLLGGLF+MLF KLT+DV  Y++KC+D+ KD  L  A+K+ TIT+GLKYSLAT
Sbjct: 2   KRMDLAGPLLGGLFKMLFTKLTKDVSKYLRKCIDSNKDFVLSVAVKSNTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WGM+C
Sbjct: 62  GNWGEQLKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKLAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + PI+EFLE WG EN EE++   I  ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSAISVGSPSAPIIEFLEGWGMENLEELTANNILDATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W G+HRDP  LV TL+RLRR +D+N+EV +V+DIR KELR+YTD GRC RPLFIVE Q
Sbjct: 182 GVWAGVHRDPGSLVNTLKRLRRNMDINSEVSIVKDIREKELRMYTDAGRCLRPLFIVEDQ 241

Query: 284 RLLIKKRDIIALQQRESPEDG------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
            LL++K  I  L +    EDG      GW+DL++ G +E++D EEEET MI MT +DL +
Sbjct: 242 ALLLRKEHIDELTRAPYYEDGKAMEPWGWNDLLSNGIVEFVDAEEEETIMICMTPDDLAE 301

Query: 338 ARL-----HPEEAYA----------DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
           +R       P++A             T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 302 SRQVDHVQQPKDAAQRVKGTSSTSLHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 361

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGIYVTNYQ RMDTLA +LYYPQKPL TTR+ME+L FR+LPAG NA+VAI CY
Sbjct: 362 SAMGKQAMGIYVTNYQVRMDTLANILYYPQKPLATTRSMEYLRFRELPAGQNAVVAILCY 421

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSSIDRG FRS++FR+Y D+EKK+G    E+F +P R + + +RHG+Y
Sbjct: 422 SGYNQEDSVIMNQSSIDRGLFRSVYFRTYMDQEKKIGMTTMEEFEKPTREHVLRLRHGTY 481

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVD 560
           +KLDDDGL  PGTRVSG+D+IIGKT PI  D  + GQ +  +++ D S  LR +ETG+VD
Sbjct: 482 EKLDDDGLIAPGTRVSGDDIIIGKTKPIPVDSTEMGQRTGSHSKLDASTPLRSTETGIVD 541

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QV+LTTN +G++FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI
Sbjct: 542 QVMLTTNHEGVKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFTCEGITPDI 601

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KV+   G EGDATPFTDVTV+ IS+AL K  YQ RGFE
Sbjct: 602 IINPHAIPSRMTIGHLVECLLSKVSTLEGSEGDATPFTDVTVEAISEALKKHNYQQRGFE 661

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
            MYNGHTGR+L A +FLGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 662 VMYNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 721


>gi|56694364|gb|AAW22922.1| RNA polymerase II second largest subunit [Amborella trichopoda]
          Length = 516

 Score = 1032 bits (2668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/516 (94%), Positives = 506/516 (98%), Gaps = 1/516 (0%)

Query: 193 PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 252
           PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTE
Sbjct: 2   PILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTE 61

Query: 253 VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAK 312
           VGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK DI ALQQRESP D GWHDLVAK
Sbjct: 62  VGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQRESP-DEGWHDLVAK 120

Query: 313 GFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPD 372
           GFIEY+DTEEEETTMISMTI+DLV ARL+PEEAY++TYTHCEIHPSLILGVCASIIPFPD
Sbjct: 121 GFIEYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPD 180

Query: 373 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 432
           HNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
Sbjct: 181 HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 240

Query: 433 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 492
           INAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R 
Sbjct: 241 INAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRE 300

Query: 493 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLR 552
           NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E QGQASRYTRRDHS SLR
Sbjct: 301 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEEMQGQASRYTRRDHSTSLR 360

Query: 553 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
           HSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT
Sbjct: 361 HSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 420

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
           VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC
Sbjct: 421 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 480

Query: 673 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
           GYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHM
Sbjct: 481 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHM 516


>gi|45545349|gb|AAS67522.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Taphrina deformans]
          Length = 936

 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/783 (62%), Positives = 600/783 (76%), Gaps = 43/783 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+ T +  ET+KA++ GY++HRLLLCAL RR  DDRDH+G KR+DLAGPLL GLFRM
Sbjct: 154 MLPHITTSEGFETRKAFFLGYMVHRLLLCALERRDPDDRDHFGKKRIDLAGPLLAGLFRM 213

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF++LT+D+R Y+ KCVD+GK+ NL  A+K  TIT+GL+YSLATG WG Q      R GV
Sbjct: 214 LFKRLTKDIRQYMTKCVDSGKEFNLPLAVKHTTITNGLRYSLATGTWGDQKKQMNARVGV 273

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 274 SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 333

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM Y++VGSA+ PI+EFLEEWG E+ E+ +P+    +TKIFVNG W+G+H DP  LVKT
Sbjct: 334 ALMSYVSVGSASAPIIEFLEEWGMESLEDYNPSAGRPSTKIFVNGVWLGVHSDPGHLVKT 393

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV---------EKQRLLIKKR 290
           LR LRR+ D++ EV VVRDIR KELR++TD GR  RPLF+V         E   L++KK 
Sbjct: 394 LRSLRRKTDISPEVSVVRDIREKELRLFTDAGRVCRPLFVVHDDESAEKSEAGSLVLKKE 453

Query: 291 DIIALQ-QRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------- 335
            +  +   +E PED    GW  +++ G  EY+D EEEET MI+MT +DL           
Sbjct: 454 HVQRMAYSKEHPEDDEKFGWAQVLSNGIAEYLDAEEEETVMIAMTPDDLEATKHMMAGYV 513

Query: 336 -------------VQARLHPEEAYAD-TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                           RL P    A   +THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 514 EPEDEKERKIAAEAAKRLRPAVNKAQHLWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 573

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 574 QSAMGKQAMGVFLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILC 633

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDS+IMNQSSIDRG FRS+F+R Y+D E+K+     ++F +P R  TM M+  +
Sbjct: 634 YSGYNQEDSMIMNQSSIDRGLFRSMFYRVYQDSEEKIDMNQAQEFEKPTRETTMKMKRST 693

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE----AQGQASRYTRRDHSISLRHSETG 557
           YDKL+DDGL  PGTRVSGEDVI+GKT  + +DE       +++  T+RD S  LR +E G
Sbjct: 694 YDKLEDDGLVAPGTRVSGEDVIVGKTAGLLKDENLADLASRSATQTKRDVSTQLRSTEAG 753

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           ++D+V+++TN+DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI 
Sbjct: 754 IIDKVMVSTNSDGHKFVKVRIRATKIPQIGDKFASRHGQKGTIGVTYRNEDMPFTSEGIV 813

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMT+  L+EC + KV +  G EGDATPFTDVTV+ +S  L + GY  R
Sbjct: 814 PDLIINPHAIPSRMTVAHLVECQLSKVGSLSGFEGDATPFTDVTVEAVSNNLREQGYHSR 873

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
           GFE MYNGHTGR+L A +FLGPTYYQRLKH+VDDKIH+R RGP+QILTRQP EGR+RDGG
Sbjct: 874 GFEIMYNGHTGRKLMAQVFLGPTYYQRLKHLVDDKIHARARGPMQILTRQPVEGRARDGG 933

Query: 738 LRF 740
           LRF
Sbjct: 934 LRF 936


>gi|56694324|gb|AAW22902.1| RNA polymerase II second largest subunit [Zamia integrifolia]
          Length = 556

 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/556 (89%), Positives = 516/556 (92%), Gaps = 10/556 (1%)

Query: 160 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 219
           GMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATK
Sbjct: 1   GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATK 60

Query: 220 IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 279
           IFVNGCWVGIHRDP++LVKTLR+LRR+VDVNTEVGVVRDIRL ELR YT YGRCSRPLFI
Sbjct: 61  IFVNGCWVGIHRDPDLLVKTLRQLRRQVDVNTEVGVVRDIRLSELRXYTXYGRCSRPLFI 120

Query: 280 VEKQRLLIKKRDIIALQQRE-----SPEDG----GWHDLVAKGFIEYIDTEEEETTMISM 330
           VE Q LLIKK DI  LQQR      SP+D     GWH+LV KGFIEY+DTEEEETTMISM
Sbjct: 121 VENQXLLIKKSDIRRLQQRXQLPLPSPDDETSVRGWHELVTKGFIEYVDTEEEETTMISM 180

Query: 331 TINDLVQARLHPEEAYADT-YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
           TINDLV AR  P  A +   YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 181 TINDLVNARKSPPNATSIVKYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 240

Query: 390 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
           MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 241 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 300

Query: 450 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
           SVIMNQSSIDRGFFRSLF+RSYRDEEK+MGTLVKE+FGRP+R NT GMRHGSYDKLDDDG
Sbjct: 301 SVIMNQSSIDRGFFRSLFYRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDG 360

Query: 510 LAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 569
           LAPPGTRVSGEDVIIGKTTP++QDE+ GQA+RYT+RD S SLRHS +GMVDQVLLTTNAD
Sbjct: 361 LAPPGTRVSGEDVIIGKTTPVTQDESGGQAARYTKRDQSTSLRHSXSGMVDQVLLTTNAD 420

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 421 GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPS 480

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 481 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 540

Query: 690 RLTAMIFLGPTYYQRL 705
           RL+AMIFLGPTYYQRL
Sbjct: 541 RLSAMIFLGPTYYQRL 556


>gi|520515|gb|AAA50228.1| RNA polymerase II, second largest subunit, partial [Helobdella
           stagnalis]
          Length = 859

 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/711 (68%), Positives = 577/711 (81%), Gaps = 10/711 (1%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG  DFCET+KAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 154 MLPHVGISDFCETRKAYFLGYMVHRLLLAALGRREVDDRDHYGNKRLDLAGPLLAYLFRG 213

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFR L++++R Y QK +D GKD NL+ AIK +TIT GLKYSLATGNWG Q  A   RAGV
Sbjct: 214 LFRNLSKEIRLYAQKFIDRGKDFNLELAIKTRTITDGLKYSLATGNWGDQKKAHQARAGV 273

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 274 SQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGCAVGLVKNL 333

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGS   PILEFLEEW  EN EEISP+ I  AT+IFVNGCWVGIHRDPE L+ T
Sbjct: 334 ALMAYISVGSQPSPILEFLEEWSMENLEEISPSAIMDATRIFVNGCWVGIHRDPEQLMNT 393

Query: 240 LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
           L++LRR++D+  +EV V+RDIR +E+RIYTD GR  RPL IVE Q+LL+KKR I  L++R
Sbjct: 394 LKKLRRQMDIIVSEVSVIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRHIDLLKER 453

Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
           E   +  W DLVA G +EYIDT EEET M++MT  D ++        Y  TYTHCEIHPS
Sbjct: 454 EY-NNYSWQDLVANGVVEYIDTMEEETVMLAMTPEDFIEK----GGQYCSTYTHCEIHPS 508

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VL+YPQKPLVTT
Sbjct: 509 MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPQKPLVTT 568

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME+L FR+LPAGIN+I AIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+D E K 
Sbjct: 569 RSMEYLKFRELPAGINSITAIASYTGYNQEDSVIMNESAVDRGFFRSVFYRSYKDAESKK 628

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
           G   +E F +PDRS   GMR  SYDKLDDDG+  PGTRVSG+D ++GKT   P ++DE +
Sbjct: 629 GFDQEEVFEKPDRSYVQGMRANSYDKLDDDGIISPGTRVSGDDALVGKTISLPENEDELE 688

Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           GQA RYT+RD S+ +R SETG+V QV++T N DG +F K+RVR+V+ PQIGDKF+SRHGQ
Sbjct: 689 GQARRYTKRDCSVFMRKSETGVVGQVMVTINQDGFKFTKIRVRTVKTPQIGDKFASRHGQ 748

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGT GM Y QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKVAA+ G+  DATP
Sbjct: 749 KGTCGMRYRQEDMPFTAEGITPDIIINPHAIPSRMTVGHLIECLQGKVAANRGEIADATP 808

Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           F D V V  IS  L + GY M G E +YNGHTGR++ + IFLGPTYYQRLK
Sbjct: 809 FNDTVNVRKISDVLKEYGYHMHGNEVLYNGHTGRKIVSQIFLGPTYYQRLK 859


>gi|71841601|gb|AAZ43091.1| RNA polymerase II second largest subunit [Gunnera chilensis]
          Length = 534

 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/534 (90%), Positives = 516/534 (96%)

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP++TKIFVNGCWVGIHR
Sbjct: 1   ACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPESTKIFVNGCWVGIHR 60

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           +PE+LVKTLR+LRR+VDVNTEVG++RDIRLKELR+YTDYGRCSRPLFIV+KQRLLIKK+D
Sbjct: 61  NPELLVKTLRQLRRQVDVNTEVGIIRDIRLKELRLYTDYGRCSRPLFIVDKQRLLIKKKD 120

Query: 292 IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
           I ALQQRE+P++ GWHDLV+KGFIEYIDTEEEETTMISMTI +L   R   +EA+   +T
Sbjct: 121 IRALQQRENPDEMGWHDLVSKGFIEYIDTEEEETTMISMTIQELANVRNVQQEAFYGLHT 180

Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYP
Sbjct: 181 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 240

Query: 412 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
           QKPLVTTRAMEHLHFR+LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 241 QKPLVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 300

Query: 472 RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
           RDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLD+DGLAPPGTRV+GEDVIIGKTTPI+
Sbjct: 301 RDEEKKMGTLVKEDFGRPNRDNTMGMRHGSYDKLDEDGLAPPGTRVAGEDVIIGKTTPIA 360

Query: 532 QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
           QD+ QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFS
Sbjct: 361 QDDTQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFS 420

Query: 592 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
           SRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG+E
Sbjct: 421 SRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGQE 480

Query: 652 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           GDATPFT+VTVD+ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 481 GDATPFTEVTVDSISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 534


>gi|6606139|gb|AAF19082.1|AF107810_1 DNA-dependent RNA polymerase II RPB140 [Morchella elata]
          Length = 927

 Score = 1030 bits (2664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/774 (63%), Positives = 606/774 (78%), Gaps = 36/774 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+L CAL RR  DDRDH+G KRLDLAGPLL GLFR 
Sbjct: 156 LLPHISQSEGSETRKAFFLGYMVHRMLQCALERREVDDRDHFGKKRLDLAGPLLAGLFRT 215

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           L++KLT+DV  Y++KCV+ GKD NL  A+K+ TIT+GLKYSLATGNWG Q  AA ++AGV
Sbjct: 216 LWKKLTKDVYKYLEKCVETGKDFNLTLAVKSNTITNGLKYSLATGNWGEQKKAASSKAGV 275

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 276 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 335

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM YIT+G+  YP+++FL     E  EE  P   P ATK+FVNG WVG HRDP ML K 
Sbjct: 336 SLMSYITIGTPGYPLVDFLSSNDMELLEEYEPQRSPNATKVFVNGVWVGTHRDPLMLHKV 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ +RR+  VN EV ++RDIR +E +I+TD GR  RPLF+++       + +L+++K  I
Sbjct: 396 VQDVRRQGVVNHEVSIIRDIRDREFKIFTDAGRVCRPLFVIDNDPRSERRGQLVLQKEHI 455

Query: 293 IALQQRES---PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-------------- 335
             L+   +    +  GW  L+  G +EY+D EEEET MI MT  DL              
Sbjct: 456 EKLEDDHALPMEDRFGWEGLLFGGTVEYLDAEEEETVMIVMTPEDLDMSRQMQLGYEEPK 515

Query: 336 -------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
                  V+A ++P  A+  T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 516 DEFSAKRVKAPINPHTAH--TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQ 573

Query: 389 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
           AMG+++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQE
Sbjct: 574 AMGVFLTNFAERMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQE 633

Query: 449 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
           DSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E+F +P R+NT+ ++HG+YDKLD+D
Sbjct: 634 DSVIMNQSSIDRGLFRSLFYRSYMDQEKRIGMQVVEEFEKPTRANTLKLKHGTYDKLDED 693

Query: 509 GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
           GL  PG RVSGED+IIGKT PI+ D +  GQ  ++ T+RD S  LR +E G+VDQV+LTT
Sbjct: 694 GLVAPGVRVSGEDIIIGKTAPIAPDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTT 753

Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           NA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGI PD+I+NPHA
Sbjct: 754 NAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHA 813

Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
           IPSRMTI  LIEC + KV++  G EGDATPFTDVTV+++S  L + GYQ RGFE MYNG+
Sbjct: 814 IPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVESVSTLLRQNGYQSRGFEVMYNGY 873

Query: 687 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           TGR+L   +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGLRF
Sbjct: 874 TGRKLVCQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 927


>gi|120561247|gb|ABM27008.1| RNA polymerase II second largest subunit, partial [Furculomyces
           boomerangus]
          Length = 906

 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/753 (64%), Positives = 594/753 (78%), Gaps = 24/753 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPHVGT    ET+K+++FGY++HRLLLCAL RR +DDRDHYG KR+DLAGPLL  LFR 
Sbjct: 154 FLPHVGTQAHNETRKSFFFGYMVHRLLLCALERREQDDRDHYGKKRMDLAGPLLAMLFRN 213

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRK+T+D+  Y+QKC+D+ ++ NL  AIK+ TIT+GLKYSLATGNWG Q  +  +R GV
Sbjct: 214 LFRKVTKDMTRYLQKCIDSKREFNLTMAIKSNTITAGLKYSLATGNWGDQKKSMQSRTGV 273

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 274 SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 333

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM +IT+G+ + P+L FLEEW  EN EE++ + IP ATKIFVNG WVGIHRD   LV T
Sbjct: 334 ALMAHITIGAESGPLLLFLEEWAMENLEELTASNIPDATKIFVNGVWVGIHRDANRLVST 393

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           L ++RRR+D++ E+ +VRD+R KELR++TD GR SRPLF+V   RL + K  + A++ R+
Sbjct: 394 LLQMRRRLDLSYELSIVRDVREKELRLFTDAGRVSRPLFVVNNLRLNLTKDIVRAIEARD 453

Query: 300 --SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---HPEEAYAD------ 348
              PE   WHDL+ +G +EY+D EEEET MI MT  +L ++R+   H  E  A+      
Sbjct: 454 VNDPEAVRWHDLMVEGIVEYLDAEEEETAMICMTSAELKESRMFHEHGIEPQAEDDLASR 513

Query: 349 ----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                     T+THCEIHPS+ILG+CASI+PFPDHNQSPRNTYQSAMGKQAMGI +T+YQ
Sbjct: 514 IRSRRNVQIHTWTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAMGKQAMGIMLTSYQ 573

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDTL+ +LYYPQKPL TT +ME++ F  LPAG NA+VAI CYSGYNQEDSVIMNQSSI
Sbjct: 574 LRMDTLSNILYYPQKPLATTHSMEYIKFSDLPAGQNAVVAILCYSGYNQEDSVIMNQSSI 633

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRS+F+R+Y+DEE + G      F RP R  T+ ++HG+Y+KL+DDGL  PGTRV+
Sbjct: 634 DRGLFRSMFYRTYQDEEDRQGMKTMGTFERPTRETTLRLKHGTYEKLEDDGLIAPGTRVT 693

Query: 519 GEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           G+D+IIGKTTPI  D  + GQ +  +T+ D S  LR +ETG+VDQV+LTTN DG +FVKV
Sbjct: 694 GDDIIIGKTTPIPIDSIELGQRTVTHTKLDASKPLRSTETGIVDQVMLTTNGDGFKFVKV 753

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           RVRS R+PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIPSRMTIG L
Sbjct: 754 RVRSTRVPQIGDKFASRHGQKGTIGITYRTEDMPFTSEGVVPDLIINPHAIPSRMTIGHL 813

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
           +EC++ K+A  +G   DATPFTDVTV+ IS+ L   GYQ RGFE MYNGHTGR+L A +F
Sbjct: 814 VECLLSKLATLIGTTADATPFTDVTVEAISRELFSLGYQSRGFEVMYNGHTGRKLQAQVF 873

Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 729
           LGPTYYQRLKHMVDDKIHSR RGPVQILT QP 
Sbjct: 874 LGPTYYQRLKHMVDDKIHSRARGPVQILTSQPV 906


>gi|47156743|gb|AAT12268.1| RNA polymerase II second largest subunit [Diapensia lapponica]
          Length = 530

 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/530 (93%), Positives = 516/530 (97%), Gaps = 1/530 (0%)

Query: 171 QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 230
           QACGLVKNLALMVY+TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW GIH
Sbjct: 1   QACGLVKNLALMVYVTVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWAGIH 60

Query: 231 RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 290
           RDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ+LLIKK+
Sbjct: 61  RDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQQLLIKKK 120

Query: 291 DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 350
           DI ALQQRE+PE+GGWHDLVAKGFIEYIDTEEEETT+ISMTIN+LV  R HPE++    Y
Sbjct: 121 DIRALQQRETPEEGGWHDLVAKGFIEYIDTEEEETTLISMTINELVSNREHPEDSNFGIY 180

Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
           THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY
Sbjct: 181 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 240

Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
           PQKPLVTTRAMEHLHFR+LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS
Sbjct: 241 PQKPLVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 300

Query: 471 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
           YRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI
Sbjct: 301 YRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 360

Query: 531 SQDEAQ-GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 589
           +QD++Q G   RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK
Sbjct: 361 AQDDSQGGPGGRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 420

Query: 590 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 649
           FSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG
Sbjct: 421 FSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 480

Query: 650 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 699
           KEGDATPFT+VTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGP
Sbjct: 481 KEGDATPFTEVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGP 530


>gi|6606133|gb|AAF19079.1|AF107807_1 DNA-dependent RNA polymerase II RPB140, partial [Leotia viscosa]
          Length = 938

 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/782 (63%), Positives = 603/782 (77%), Gaps = 42/782 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 157 LLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRN 216

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y Q+CV+N K+ N    IK+ T+T+GLKYSLATGNWG Q  AA + AGV
Sbjct: 217 LFKKLTQDLFKYTQRCVENRKEFNPALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGV 276

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 277 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 336

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV+T
Sbjct: 337 ALMCYVTVGTPSDPIVEFMIQRSMEVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVQT 396

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR   ++ EV ++RDIR +E +I+TD GR  RPLF+++       K  L++ K  I
Sbjct: 397 VRDLRRSHHISYEVSLIRDIRDREFKIFTDAGRVCRPLFVIDNDVNSKNKGNLVLNKGHI 456

Query: 293 ----------IALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 340
                     + L   E  E G  G+  L+ +G +EY+D EEEET MI MT  DL  +R 
Sbjct: 457 KRLEDDTTLPLGLDLEEKQERGYFGFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQ 516

Query: 341 --------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                                P +  A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 517 LQAGYQIQEDNSGELNRRVKAPMKPTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNT 576

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 577 YQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 636

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+EK++G  V E F +P R++T+ ++HG
Sbjct: 637 CYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRIGMNVVEQFEKPFRNDTLKLKHG 696

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ +++RD S  LR +E G+
Sbjct: 697 TYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDNEELGQRTKAHSKRDASTPLRSTENGI 756

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTNA+GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 757 VDQVLITTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYKQEDMPFTREGIVP 816

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTI  LIEC + KVA+  G EGDATPFTDVTVDN+SK L + GYQ RG
Sbjct: 817 DLIINPHAIPSRMTIAHLIECQLSKVASLSGYEGDATPFTDVTVDNVSKLLREHGYQSRG 876

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
           FE MY+GHTGR+LTA +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGL
Sbjct: 877 FEIMYHGHTGRKLTAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGL 936

Query: 739 RF 740
           RF
Sbjct: 937 RF 938


>gi|120561251|gb|ABM27010.1| RNA polymerase II second largest subunit, partial [Basidiobolus
           ranarum]
          Length = 883

 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/732 (65%), Positives = 584/732 (79%), Gaps = 23/732 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPHV T    ETKKAY+FGY++HRLLL AL RR  DDRDHYG KR+DLAGPLL  LFRM
Sbjct: 152 FLPHVATEAHTETKKAYFFGYMVHRLLLAALERRDLDDRDHYGKKRMDLAGPLLAMLFRM 211

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKC+D+ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  A   RAGV
Sbjct: 212 LFRKLTKDVGRYLQKCIDSNREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGV 271

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 272 SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 331

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VG+ + P++E L +W  E+ E+ S   I  ATKIFVNG WVGIHRDP  L++T
Sbjct: 332 ALMSYISVGNPSAPVVEVLADWAMESLEQFSANNIADATKIFVNGVWVGIHRDPGNLIET 391

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +RR RRRVD++ EV +VRDIR KE+R YTD GR  RPL++VE QR+ ++K  ++ALQ RE
Sbjct: 392 MRRFRRRVDISPEVSIVRDIRDKEIRFYTDAGRVCRPLYVVENQRITLRKEHVVALQMRE 451

Query: 300 -SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY------------ 346
              E  GW DLV  G +EY+D EEEE +MI MT  DL ++R++ +  Y            
Sbjct: 452 YDGEPFGWQDLVVNGIVEYLDAEEEEVSMICMTPEDLSESRMYSKLGYIPEREVDVASRV 511

Query: 347 -------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 399
                    T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 
Sbjct: 512 KSSAALITHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQL 571

Query: 400 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 459
           RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ+SID
Sbjct: 572 RMDTMANILYYPQKPLCTTRAMEYLRFRELPAGQNAIVAILCYSGYNQEDSLIMNQTSID 631

Query: 460 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 519
           RG FRS+F+RSY D+EKK+G +V E+F +P R +T+ ++HG+Y+KL+ DGL  PGTRVSG
Sbjct: 632 RGLFRSIFYRSYMDQEKKVGMMVMEEFEKPTRESTLRLKHGTYEKLEGDGLIAPGTRVSG 691

Query: 520 EDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 577
           +D+IIGKT PI  D E  GQ ++ +++RD S  LR +E G+VDQV+LTTN +GL+FVKVR
Sbjct: 692 DDIIIGKTAPIPPDSEELGQRTKTHSKRDASTPLRSTENGIVDQVMLTTNQEGLKFVKVR 751

Query: 578 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 637
           VRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+  EGI PD+I+NPHAIPSRMTIG ++
Sbjct: 752 VRSTRVPQMGDKFASRHGQKGTIGVTYRQEDMPFNNEGIVPDLIINPHAIPSRMTIGHMV 811

Query: 638 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 697
           EC++ KV+   G EGDATPFT+VTV+ IS AL + GYQ RGFE +YNGHTGR+LTA I+ 
Sbjct: 812 ECLLSKVSTLSGNEGDATPFTEVTVEAISHALQEHGYQKRGFEVLYNGHTGRKLTAQIYF 871

Query: 698 GPTYYQRLKHMV 709
           GPTYYQRLKHMV
Sbjct: 872 GPTYYQRLKHMV 883


>gi|56694366|gb|AAW22923.1| RNA polymerase II second largest subunit [Trimenia moorei]
          Length = 531

 Score = 1026 bits (2653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/534 (91%), Positives = 511/534 (95%), Gaps = 3/534 (0%)

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNG
Sbjct: 1   AETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNG 60

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 284
           CWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQR
Sbjct: 61  CWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQR 120

Query: 285 LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
           LLIKK+DI ALQ RES E+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV AR +PEE
Sbjct: 121 LLIKKKDIRALQLRESVEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVSARHNPEE 179

Query: 345 AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 404
           AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTL
Sbjct: 180 AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTL 239

Query: 405 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 464
           AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFR
Sbjct: 240 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 465 SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 524
           SLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII
Sbjct: 300 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 525 GKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           GKTTPI+QDE  GQ SRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR+P
Sbjct: 360 GKTTPIAQDE--GQPSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVP 417

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL        
Sbjct: 418 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLXXXXXXXX 477

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLG
Sbjct: 478 XAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLG 531


>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1 ERTm2]
          Length = 1137

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/826 (59%), Positives = 628/826 (76%), Gaps = 25/826 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHVGT +FCETKKAY  GY I++LL+ ALGRR+E+DRDHYG KRLDLAGPL+ GLFRM
Sbjct: 328  FLPHVGTKEFCETKKAYLLGYTINKLLMVALGRRSEEDRDHYGRKRLDLAGPLMAGLFRM 387

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+K++ ++  Y+Q+C+D  KD+NL   ++  T+T+GL+YSLATGNWG Q+ +   RAGV
Sbjct: 388  LFKKMSNELAKYMQRCIDGNKDLNLIVGLRTSTLTNGLRYSLATGNWGEQSKSMQARAGV 447

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVLNR  Y STLSHLRR+N+PIGR+GKLAKPRQLH+S WGM+CPAETPEGQACGLVKN 
Sbjct: 448  AQVLNRYNYISTLSHLRRVNTPIGRDGKLAKPRQLHSSHWGMVCPAETPEGQACGLVKNF 507

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM +I+VGS +  ++E LEE G E  EE+SP  I  ATK+ VNG WVG+HR P+ L+ T
Sbjct: 508  ALMSHISVGSNSSIVVELLEECGLEGLEEVSPTAIAGATKVLVNGSWVGVHRSPDDLIGT 567

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+ LRR  ++++E+G+VRD+R KE+RI TD GR  RPLFIVEK  L I+        +  
Sbjct: 568  LKYLRRSGELSSEIGIVRDLREKEIRINTDGGRACRPLFIVEKGVLRIEH-----FLEAN 622

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
                  W +L+A G +E++D EEEET MI++  +DL    +         YTHCEI P+ 
Sbjct: 623  RHRAFTWDELMADGCVEFLDVEEEETAMIAVKTSDLRNTEI--------MYTHCEIQPAT 674

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            +LGVCAS++PFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMD+L+ VL YPQKPLV T+
Sbjct: 675  MLGVCASVVPFPDHNQSPRNTYQSAMGKQAMGMYATNFLMRMDSLSNVLCYPQKPLVITQ 734

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +M  L FR+LP+G NA+VAIACYSGYNQEDSV+MN+ ++DRG FRS F+R+Y D E +  
Sbjct: 735  SMNFLQFRELPSGQNAMVAIACYSGYNQEDSVVMNRGAVDRGLFRSFFYRTYSDMESRTK 794

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
               +E F +PDR +   M++ +Y+KLD DGL PPGTRVSGEDV+IGK   +S  +     
Sbjct: 795  PEEQECFMKPDRRSVQRMKNANYEKLDIDGLVPPGTRVSGEDVLIGKA--VSTPDGY--- 849

Query: 540  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
                 +D S ++R +E+G+VD+V+LTT  DG R+ ++RVRS R PQ+GDKF+SRHGQKGT
Sbjct: 850  -----KDASTTMRGTESGVVDRVILTTK-DGYRYARIRVRSARTPQMGDKFASRHGQKGT 903

Query: 600  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
            +G+  + EDMP+T +GITPDII+NPHAIPSRMTIG L+EC++GKV+   GKEGDATPFT 
Sbjct: 904  IGIMLSPEDMPFTADGITPDIIINPHAIPSRMTIGHLVECLLGKVSCMTGKEGDATPFTG 963

Query: 660  VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 719
            ++V+ IS+ L K GYQ RGFE MY+G TGR++ + IF+GPTYYQRLKHMV DKIH+R  G
Sbjct: 964  LSVEEISEELQKHGYQKRGFEVMYSGFTGRKMRSQIFIGPTYYQRLKHMVADKIHARAHG 1023

Query: 720  PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
            PVQILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERL D SD + V +C  CGL 
Sbjct: 1024 PVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAMFLKERLCDVSDKFEVFICNDCGLF 1083

Query: 780  AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
               N  +  + C+ C  +T++  V++PYA KLL QE+M M I+ +M
Sbjct: 1084 CAGNKDRGLYLCQLCGTRTNVSMVYMPYAFKLLVQEMMTMCISVQM 1129


>gi|6606131|gb|AAF19078.1|AF107806_1 DNA-dependent RNA polymerase II RPB140, partial [Microglossum
           viride]
          Length = 938

 Score = 1023 bits (2646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/782 (62%), Positives = 601/782 (76%), Gaps = 42/782 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 157 LLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRN 216

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y Q+CV+N K+ N    IK+ T+T+GLKYSLATGNWG Q  AA + AGV
Sbjct: 217 LFKKLTQDLFKYTQRCVENRKEFNPALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGV 276

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 277 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 336

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV+T
Sbjct: 337 ALMCYVTVGTPSDPIVEFMIQRSMEVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVQT 396

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR   ++ EV ++RDIR +E +I+TD GR  RPLF+++       K  L++ K  I
Sbjct: 397 VRDLRRSHHISYEVSLIRDIRDREFKIFTDAGRVCRPLFVIDNDVSSKNKGNLVLNKGHI 456

Query: 293 ----------IALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 340
                     + L   E  E G  G+  L+ +G +EY+D EEEET MI MT  DL  +R 
Sbjct: 457 KRLEDDATLPLGLDLEEKQERGYFGFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQ 516

Query: 341 --------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                                P +  A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 517 LQAGYQIQEDNSGELNRRVKAPMKPTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNT 576

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 577 YQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 636

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+EK++G  V E F +P R++T+ ++HG
Sbjct: 637 CYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRIGMNVVEQFEKPFRNDTLKLKHG 696

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ +++RD S  LR +E G+
Sbjct: 697 TYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDNEELGQRTKAHSKRDASTPLRSTENGI 756

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+ Y QEDMP+T EGI P
Sbjct: 757 VDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIIYRQEDMPFTREGIVP 816

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTI  LIEC + KVA+  G EGDATPFTDVTVDN+SK L + GYQ RG
Sbjct: 817 DLIINPHAIPSRMTIAHLIECQLSKVASLSGYEGDATPFTDVTVDNVSKLLREHGYQSRG 876

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
           FE MY+GHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGL
Sbjct: 877 FEIMYHGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGL 936

Query: 739 RF 740
           RF
Sbjct: 937 RF 938


>gi|56694302|gb|AAW22891.1| RNA polymerase II second largest subunit [Cryptogramma crispa]
          Length = 537

 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/538 (90%), Positives = 508/538 (94%), Gaps = 1/538 (0%)

Query: 168 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 227
           PEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWV
Sbjct: 1   PEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWV 60

Query: 228 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 287
           GIHRDPE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLI
Sbjct: 61  GIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLI 120

Query: 288 KKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYA 347
           KK DI ALQQ+E+ E G W+DLV KGFIEY+DTEEEETTMISMTI DLV ARLHPEEAY+
Sbjct: 121 KKSDIRALQQKETTEPG-WYDLVTKGFIEYVDTEEEETTMISMTIQDLVNARLHPEEAYS 179

Query: 348 DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 407
           DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYV
Sbjct: 180 DTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYV 239

Query: 408 LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 467
           LYYPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSIDRGFFRS+F
Sbjct: 240 LYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIF 299

Query: 468 FRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 527
           +RSYRDEEKK GTLVKE+F RP R +T GMRHGSYDK DDDGLAPPGTRVSGEDVIIGKT
Sbjct: 300 YRSYRDEEKKQGTLVKEEFERPIREHTQGMRHGSYDKXDDDGLAPPGTRVSGEDVIIGKT 359

Query: 528 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 587
           TPI+QD+   QA RY++RD S  LRHSE+GMVDQVLLTTNADGLR VK+RV S+RIPQIG
Sbjct: 360 TPIAQDDTGTQAQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRXVKIRVXSIRIPQIG 419

Query: 588 DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 647
           DKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH
Sbjct: 420 DKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 479

Query: 648 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           MGKEGDATPFTDVTVDNISKALHKCGYQ RGFETMYNGHTGRRL AMIFLGPTYYQRL
Sbjct: 480 MGKEGDATPFTDVTVDNISKALHKCGYQXRGFETMYNGHTGRRLNAMIFLGPTYYQRL 537


>gi|120561253|gb|ABM27011.1| RNA polymerase II second largest subunit, partial [Funneliformis
           mosseae]
          Length = 883

 Score = 1021 bits (2640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/740 (65%), Positives = 586/740 (79%), Gaps = 35/740 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPHV T   CE +KA++ GY++HRLLL ALGRR  DDRDHYG KR+DLAGPLL  LFRM
Sbjct: 148 LLPHVSTEYGCEKRKAFFLGYMVHRLLLAALGRRELDDRDHYGKKRMDLAGPLLASLFRM 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+DV  Y++KC+D+ ++ NL  AIKA+TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 208 LFKKLTKDVSIYLRKCIDSNREFNLNLAIKAQTITNGLKYSLATGNWGDQKKAMQSRAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTFASTLSHLRRCNTPMGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENF-EEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
           +LM YI+VGSA+ PI++FLEE+G  N  ++  PA I   TK+FVNG W GI   PE L  
Sbjct: 328 SLMSYISVGSASKPIIDFLEEYGMINLNQQFDPANIKDNTKVFVNGKWAGISSSPEQLSY 387

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL-----LIKKRDII 293
           TL+ LRR VDV+ EV VVRDIR +ELRIYTD GR  RPLFIVE +RL     LI+K D+ 
Sbjct: 388 TLKGLRRTVDVSPEVSVVRDIRERELRIYTDAGRVCRPLFIVENERLRITKGLIQKLDVF 447

Query: 294 ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD----- 348
            +++       GW DL++   IEYID EEEET MI MT  DL  AR+  E          
Sbjct: 448 KMKKMTF----GWQDLISNSVIEYIDAEEEETVMICMTPEDLAAARVFHETGETKQEKAH 503

Query: 349 -----------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                            ++THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 504 ERDVAARVKSETNLKIHSWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 563

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           IYVTNYQ RMDTLA +LYYPQKPLVTTRAME L FR+LPAG NAIVAI CYSGYNQEDSV
Sbjct: 564 IYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRFRELPAGQNAIVAILCYSGYNQEDSV 623

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRS+F+RSY D+EKK+G L  E+F +P +  T+ ++HG+Y+KL++DGL 
Sbjct: 624 IMNQSSIDRGLFRSIFYRSYMDQEKKVGMLTIEEFEKPTKETTLRLKHGTYEKLEEDGLI 683

Query: 512 PPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNAD 569
            PGTRVSG+D+IIGK TPIS D  + GQ  + +T+RD S  +R +ETG+VDQV++TTNA+
Sbjct: 684 APGTRVSGDDIIIGKVTPISPDTVELGQRKTSHTKRDASTPMRSTETGIVDQVMVTTNAE 743

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           G++FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+++NPHAIPS
Sbjct: 744 GMKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLVINPHAIPS 803

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMTIG ++EC++GKV+   G+EGDATPFTDVTV+ IS++L   GYQ RGFE MYNGHTGR
Sbjct: 804 RMTIGHMVECLLGKVSTLTGQEGDATPFTDVTVEAISQSLRSQGYQSRGFEVMYNGHTGR 863

Query: 690 RLTAMIFLGPTYYQRLKHMV 709
           +L+A +FLGPTYYQRLKHMV
Sbjct: 864 KLSAQVFLGPTYYQRLKHMV 883


>gi|120561255|gb|ABM27012.1| RNA polymerase II second largest subunit, partial [Funneliformis
           mosseae]
          Length = 883

 Score = 1021 bits (2639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/740 (65%), Positives = 586/740 (79%), Gaps = 35/740 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPHV T   CE +KA++ GY++HRLLL ALGRR  DDRDHYG KR+DLAGPLL  LFRM
Sbjct: 148 LLPHVSTEYGCEKRKAFFLGYMVHRLLLAALGRRELDDRDHYGKKRMDLAGPLLASLFRM 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+DV  Y++KC+D+ ++ NL  AIKA+TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 208 LFKKLTKDVSIYLRKCIDSNREFNLNLAIKAQTITNGLKYSLATGNWGDQKKAMQSRAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTFASTLSHLRRCNTPMGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENF-EEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
           +LM YI+VGSA+ PI++FLEE+G  N  ++  PA I   TK+FVNG W GI   PE L  
Sbjct: 328 SLMSYISVGSASKPIIDFLEEYGMINLNQQFDPANIKDNTKVFVNGKWAGISSSPEQLSY 387

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL-----LIKKRDII 293
           TL+ LRR VDV+ EV VVRDIR +ELRIYTD GR  RPLFIVE +RL     LI+K D+ 
Sbjct: 388 TLKGLRRTVDVSPEVSVVRDIRERELRIYTDAGRVCRPLFIVENERLRITKGLIQKLDVF 447

Query: 294 ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD----- 348
            +++       GW DL++   IEYID EEEET MI MT  DL  AR+  E          
Sbjct: 448 KMKKMTF----GWQDLISNSVIEYIDAEEEETVMICMTPEDLAAARVFHETGETKQEKAH 503

Query: 349 -----------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                            ++THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 504 ERDVAARVKSETNLKIHSWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 563

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           IYVTNYQ RMDTLA +LYYPQKPLVTTRAME L FR+LPAG NAIVAI CYSGYNQEDSV
Sbjct: 564 IYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRFRELPAGQNAIVAILCYSGYNQEDSV 623

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRS+F+RSY D+EKK+G L  E+F +P +  T+ ++HG+Y+KL++DGL 
Sbjct: 624 IMNQSSIDRGLFRSIFYRSYMDQEKKVGMLTIEEFEKPTKETTLRLKHGTYEKLEEDGLI 683

Query: 512 PPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNAD 569
            PGTRVSG+D+IIGK TPIS D  + GQ  + +T+RD S  +R +ETG+VDQV++TTNA+
Sbjct: 684 APGTRVSGDDIIIGKVTPISPDTVELGQRKTTHTKRDASTPMRSTETGIVDQVMVTTNAE 743

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           G++FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+++NPHAIPS
Sbjct: 744 GMKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLVINPHAIPS 803

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMTIG ++EC++GKV+   G+EGDATPFTDVTV+ IS++L   GYQ RGFE MYNGHTGR
Sbjct: 804 RMTIGHMVECLLGKVSTLTGQEGDATPFTDVTVEAISQSLRSQGYQSRGFEVMYNGHTGR 863

Query: 690 RLTAMIFLGPTYYQRLKHMV 709
           +L+A +FLGPTYYQRLKHMV
Sbjct: 864 KLSAQVFLGPTYYQRLKHMV 883


>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1166

 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/839 (58%), Positives = 611/839 (72%), Gaps = 22/839 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            MLPH+G G  CE  KA++ GY++HR L  AL RR  DDRDHYGNKRLDLAG L+  LFR 
Sbjct: 337  MLPHIGVGPQCEQAKAFFLGYMVHRTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRT 396

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF++LT+ +   V   V+      +   +  + + SGL+YSLATGNWG Q  A   RAGV
Sbjct: 397  LFKQLTKKLTRKVTDLVNRNHKFMVITLLDVEILGSGLRYSLATGNWGDQKKAHEARAGV 456

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT+ASTLSHLRRLNSPI R GK+AKPRQLHN+ WG +CPAETPEG A GLVKNL
Sbjct: 457  SQVLNRLTFASTLSHLRRLNSPIDRTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNL 516

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEI-SPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
            +LM  +TVGS   P+ + L   G +  + + S + I  ATK+FVNG WVGIH  P+ LV 
Sbjct: 517  SLMASLTVGSDDTPVHDLLGASGLDYLDRLPSRSAIKTATKVFVNGNWVGIHSHPDELVT 576

Query: 239  TLRR--LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-----RLLIKKRD 291
            T+R+  L     V +EV + R+IR +E+ I TD GR +RPL IV K      R  +K   
Sbjct: 577  TMRQYLLDAAHSVASEVSIFRNIREREVHIVTDSGRTTRPLLIVNKDDANRCRFALKNSH 636

Query: 292  IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
            ++AL+     +   W  LV +G +EYID  EEETTMI+M    L       E +Y +TYT
Sbjct: 637  VMALRN----DQMSWTHLVQRGVVEYIDVNEEETTMIAMDQGTL------EETSYCNTYT 686

Query: 352  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
            HCEIHPS+IL +CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP
Sbjct: 687  HCEIHPSMILSICASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYP 746

Query: 412  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
            Q+PLV TR+M +L F +LPAGINAIV I  Y+GYNQEDSVIMN+ S++RG FRS+F+RSY
Sbjct: 747  QRPLVQTRSMNYLRFAELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFRSVFYRSY 806

Query: 472  R-DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
               E  + G ++K D  +P R N +GMR  +YDKL+DDG+  PG RVSG+D I+G+   +
Sbjct: 807  AASEHSERGEIIKID--KPSRENCIGMRRANYDKLEDDGIVAPGIRVSGDDAIVGRLLEL 864

Query: 531  SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
             +   Q    R+ +RD S+ LR SE+G++D V+++ N  G +FVK+RVRSVR PQIGDKF
Sbjct: 865  PEATRQASGGRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGDKF 924

Query: 591  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
            +SRHGQKGT GM Y QEDMP+   G+ PDIIVNPHAIPSRMTIG LIEC++GK A+H G 
Sbjct: 925  ASRHGQKGTCGMQYAQEDMPFAASGVVPDIIVNPHAIPSRMTIGHLIECLLGKSASHSGT 984

Query: 651  EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
             GDATPFT V V +++  L    +Q  G E MYNG TGR++ A +FLGPTYYQRLKHMVD
Sbjct: 985  IGDATPFTKVNVTDVADILEGYNFQRYGNEVMYNGFTGRKMQAQVFLGPTYYQRLKHMVD 1044

Query: 711  DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 770
            DKIH+R RGP+Q LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FL+ERLF+ SD Y +
Sbjct: 1045 DKIHARARGPLQNLTRQPMEGRSRDGGLRFGEMERDCMIAHGAAQFLRERLFEVSDPYSL 1104

Query: 771  HVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            HVC+ CGL  +A L+KN FEC  C+N T + ++ +PYACKLLFQELM M++ PRM+T +
Sbjct: 1105 HVCDVCGLPCVAKLEKNEFECTRCRNSTRVSRIRLPYACKLLFQELMTMSVVPRMMTDD 1163


>gi|45545303|gb|AAS67499.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Aspergillus fumigatus]
          Length = 936

 Score = 1019 bits (2636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/779 (63%), Positives = 602/779 (77%), Gaps = 39/779 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 158 LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 218 LFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASSKAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 278 SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 338 ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDPAHLVNT 397

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
           +  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 398 MLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKDHI 457

Query: 293 IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
             L+Q +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 458 RKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQL 517

Query: 341 H-----PEE------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                 PEE              A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 518 QAGYALPEEDDPNKRVRSVLSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 577

Query: 384 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
           AMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYS
Sbjct: 578 AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYS 637

Query: 444 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
           GYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+YD
Sbjct: 638 GYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYD 697

Query: 504 KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 561
           KLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G+VDQ
Sbjct: 698 KLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQ 757

Query: 562 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
           VL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG++PD+I
Sbjct: 758 VLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLI 817

Query: 622 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
           +NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD+IS+ L + GYQ RGFE 
Sbjct: 818 INPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEV 877

Query: 682 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 878 MYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 936


>gi|56694290|gb|AAW22885.1| RNA polymerase II second largest subunit [Equisetum hyemale]
          Length = 539

 Score = 1019 bits (2636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/541 (89%), Positives = 512/541 (94%), Gaps = 2/541 (0%)

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNG
Sbjct: 1   AETPEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNG 60

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 284
           CWVGIHRDPE+LVKTLR+LRR+VDVNTEVGVVRDI LKELR+ TDYGRCSRPLFIVE QR
Sbjct: 61  CWVGIHRDPELLVKTLRQLRRQVDVNTEVGVVRDIILKELRLXTDYGRCSRPLFIVENQR 120

Query: 285 LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
           LLIKK DI ALQQR+S  D GW+DLVAKGFIEY+DTEEEETTMISMTI+D+V AR +PEE
Sbjct: 121 LLIKKSDIRALQQRDS-SDSGWYDLVAKGFIEYVDTEEEETTMISMTISDVVNARNNPEE 179

Query: 345 AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 404
           AY+DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R DTL
Sbjct: 180 AYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRXDTL 239

Query: 405 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 464
           AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFR
Sbjct: 240 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 465 SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 524
           S+F+RSYRDEEKK GTLVKE+F RP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVII
Sbjct: 300 SIFYRSYRDEEKKQGTLVKEEFERPNRDNTNGMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 525 GKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           GKTTP+  D++ GQ  RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK+RVRSVRIP
Sbjct: 360 GKTTPLPXDDS-GQVQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSVRIP 418

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           QIGDKFSSRHGQ GTVGMTYTQEDMPW+ EGITPDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 419 QIGDKFSSRHGQXGTVGMTYTQEDMPWSQEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 478

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           AAHMGKEGDATPFTDVTVD+ISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQR
Sbjct: 479 AAHMGKEGDATPFTDVTVDSISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQR 538

Query: 705 L 705
           L
Sbjct: 539 L 539


>gi|406694356|gb|EKC97684.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
            asahii CBS 8904]
          Length = 1757

 Score = 1018 bits (2633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/789 (62%), Positives = 607/789 (76%), Gaps = 41/789 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHV   +  E++KA++ GY+IHRL   ALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 372  FLPHVSVSEGFESRKAFFLGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANLFRI 431

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KLTRDV  ++QKCV+  K+  L  AIK   IT+GLKYSLATGNWG QA A   RAGV
Sbjct: 432  LFKKLTRDVYRHLQKCVETHKEFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQARAGV 491

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 492  SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLVKNL 551

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM YI+VGS + P++EFLEEWG E  +E   A  P ATK+FVNG W+GIHRD   L + 
Sbjct: 552  ALMSYISVGSYSAPVMEFLEEWGLEPQDEYGSA--PNATKVFVNGVWMGIHRDAVKLHEN 609

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQ 297
            L  +RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L +K+  I  L+ 
Sbjct: 610  LLEMRRGGQLKHEVSIVRDIRERELRLYTDAGRVCRPLFIVDRPTQTLRLKREHIDRLEN 669

Query: 298  -----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--PEE------ 344
                  E+ +   W +L+ +G IEY+D EEEET +I+MT  DL  AR++  P+E      
Sbjct: 670  IADGLEEAVDGSAWDELLYQGVIEYVDAEEEETILIAMTSEDLENARMYESPQEVARAQA 729

Query: 345  ----------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
                            +++  YTH EIHPS+ILGVCASI+PFPDHNQSPRNTYQSAMGKQ
Sbjct: 730  AHTLEAFDPTARVKSSSWSQNYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQSAMGKQ 789

Query: 389  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
            AMGI++TNYQ RMDT+A +LYYPQ PL TT++M++L F  LPAG NAIVAI CYSGYNQE
Sbjct: 790  AMGIHLTNYQLRMDTMANILYYPQSPLATTQSMKYLKFSDLPAGQNAIVAILCYSGYNQE 849

Query: 449  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKL 505
            DSVIMNQSSIDRG FRSL++R+Y D EK +G    E F +PDR+ T+ M+HGS   Y KL
Sbjct: 850  DSVIMNQSSIDRGLFRSLYYRAYTDTEKMVGMQKVESFEKPDRNETLRMKHGSSDRYAKL 909

Query: 506  DDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVL 563
            D+DGL  P T V+G+D+IIGKT PI  D E  GQ ++ +T+RD S  ++ +E G+VDQV+
Sbjct: 910  DNDGLITPATNVNGDDIIIGKTAPIPPDSEELGQRSATHTKRDVSTPMKSTEQGVVDQVM 969

Query: 564  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
            +TTNADGL+FVK+R+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+N
Sbjct: 970  ITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIIN 1029

Query: 624  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
            PHAIPSRMTIG L+EC++ K+A   G+EGDATPFT++TV+++SK L + GYQ RG E MY
Sbjct: 1030 PHAIPSRMTIGHLVECLLSKLATLTGREGDATPFTELTVESVSKLLRQRGYQSRGLEVMY 1089

Query: 684  NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 743
            +GHTG++L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEM
Sbjct: 1090 HGHTGKKLRAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1149

Query: 744  ERDCMIAHG 752
            ERDC+  HG
Sbjct: 1150 ERDCL--HG 1156



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 66/85 (77%)

Query: 746  DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 805
            +CMI+HG + FLKER+++ SDA+R+HVC+ CGL+A+ANLKK  F C  C+N T I Q++I
Sbjct: 1671 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANLKKQEFHCSVCRNSTQISQIYI 1730

Query: 806  PYACKLLFQELMAMAIAPRMLTKED 830
            PYA KLLFQEL AM +  RM + ED
Sbjct: 1731 PYAAKLLFQELQAMNVTVRMYSDED 1755


>gi|321257963|ref|XP_003193762.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus gattii WM276]
 gi|317460232|gb|ADV21975.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus gattii
            WM276]
          Length = 1193

 Score = 1018 bits (2632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/863 (58%), Positives = 613/863 (71%), Gaps = 90/863 (10%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHV T +  E+KKAY+ GY+                                      
Sbjct: 388  FLPHVSTAEGFESKKAYFLGYM-------------------------------------- 409

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
                           CV+  K+  L  AI+  T+T GLKY+LATGNWG+ +   TRAGVS
Sbjct: 410  ---------------CVEQNKEFALNMAIRPNTVTDGLKYALATGNWGKRD--NTRAGVS 452

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+ K AKPRQLHN+ WGM+CPAETPEG ACGLVKNLA
Sbjct: 453  QVLNRYTFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLA 512

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS + P++EFLEEWG E+  E   A  P ATK+FVNG W+GIHRD   L   L
Sbjct: 513  LMSYISVGSYSAPVMEFLEEWGLEDLSEYQDA--PTATKVFVNGVWMGIHRDAPTLHNNL 570

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQ- 297
             ++RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L +K+  I  + Q 
Sbjct: 571  LQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQL 630

Query: 298  -RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------------HPE 343
              E    G W  L+++G +EY+D  EEET +I+MT  DLV AR              H  
Sbjct: 631  ADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNL 690

Query: 344  EAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 392
            E++           +  YTH EIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 691  ESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 750

Query: 393  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 452
             +TNYQ RMDT+  VLYYPQKPL TTR+ME+L F +LPAG NAIVAI CYSGYNQEDSVI
Sbjct: 751  CLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVI 810

Query: 453  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDG 509
            MNQSSIDRG FRSL+FRSY D EK  G +  E   +PDR+ T+ M+HG+   Y KLD DG
Sbjct: 811  MNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTSDRYAKLDVDG 870

Query: 510  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTN 567
            L  PGT V+G+D++IGKT P+ +D E  GQ ++ +T+RD S  L+ +E G+VDQV+L+TN
Sbjct: 871  LVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTN 930

Query: 568  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
             +G  FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PDII+NPHAI
Sbjct: 931  GEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAI 990

Query: 628  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
            PSRMTIG L+EC++ KV+   G EGDATPFT++TV+ +SK L   GYQ RGFE +Y+GHT
Sbjct: 991  PSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQSRGFEVLYHGHT 1050

Query: 688  GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
            GR+L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1051 GRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDC 1110

Query: 748  MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 807
            MI+HG + FLKER++D SDA+R+HVC+ CGL+A+ANLKK  F C  C+N T I QV+IPY
Sbjct: 1111 MISHGIAGFLKERMYDSSDAFRIHVCDICGLMAVANLKKQEFYCSVCRNSTQISQVYIPY 1170

Query: 808  ACKLLFQELMAMAIAPRMLTKED 830
            A KLLFQEL AM IA RM  + D
Sbjct: 1171 AAKLLFQELQAMNIACRMYGETD 1193


>gi|58266096|ref|XP_570204.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226437|gb|AAW42897.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
            neoformans var. neoformans JEC21]
          Length = 1193

 Score = 1018 bits (2632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/863 (58%), Positives = 613/863 (71%), Gaps = 90/863 (10%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHV T +  E+KKAY+ GY+                                      
Sbjct: 388  FLPHVSTAEGFESKKAYFLGYM-------------------------------------- 409

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
                           CV+  K+  L  AI+  TIT GLKY+LATGNWG+ +   TRAGVS
Sbjct: 410  ---------------CVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRD--NTRAGVS 452

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNR T+ASTLSHLRR N+PIGR+ K AKPRQLHN+ WGM+CPAETPEG ACGLVKNLA
Sbjct: 453  QVLNRYTFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLA 512

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS + P++EFLEEWG E+  E   A  P ATK+FVNG W+GIHRD   L   L
Sbjct: 513  LMSYISVGSYSAPVMEFLEEWGLEDLSEYQDA--PTATKVFVNGVWMGIHRDAPTLHNNL 570

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQR 298
             ++RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L +K+  I  + Q 
Sbjct: 571  LQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQM 630

Query: 299  --ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------------HPE 343
              E    G W  L+++G +EY+D  EEET +I+MT  DLV AR              H  
Sbjct: 631  ADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNL 690

Query: 344  EAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 392
            E++           +  YTH EIHPS+ILGVCASI+PFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 691  ESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGV 750

Query: 393  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 452
             +TNYQ RMDT+  VLYYPQKPL TTR+ME+L F +LPAG NAIVAI CYSGYNQEDSVI
Sbjct: 751  CLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVI 810

Query: 453  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDG 509
            MNQSSIDRG FRSL+FRSY D EK  G +  E   +PDR+ T+ M+HG+   Y KLD DG
Sbjct: 811  MNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDG 870

Query: 510  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTN 567
            L  PGT V+G+D++IGKT P+ +D E  GQ ++ +T+RD S  L+ +E G+VDQV+L+TN
Sbjct: 871  LVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTN 930

Query: 568  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
             +G  FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PDII+NPHAI
Sbjct: 931  GEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAI 990

Query: 628  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
            PSRMTIG L+EC++ KV+   G EGDATPFT++TV+ +SK L   GYQ RGFE +Y+GHT
Sbjct: 991  PSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQSRGFEVLYHGHT 1050

Query: 688  GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
            GR+L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1051 GRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDC 1110

Query: 748  MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 807
            MI+HG + FLKER++D SDA+R+HVC+ CGL+A+ANLKK  F C  C+N T I QV+IPY
Sbjct: 1111 MISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQVYIPY 1170

Query: 808  ACKLLFQELMAMAIAPRMLTKED 830
            A KLLFQEL AM IA RM  + D
Sbjct: 1171 AAKLLFQELQAMNIACRMYGETD 1193


>gi|2736123|gb|AAB94062.1| RPB140 [Aristolochia gigantea]
          Length = 555

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/556 (85%), Positives = 516/556 (92%), Gaps = 1/556 (0%)

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGMMCPAETPEGQACGLVKNLALM YITVGSA  PI  FLEEWG E+F EIS AVIPQAT
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMAYITVGSATTPITAFLEEWGMEDFGEISAAVIPQAT 60

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+F+NGCWVGIHR+PE+LVKTLR+LRRRVDVNTEVGVVRD+ LKELR+YTDYGRCSRPLF
Sbjct: 61  KVFLNGCWVGIHRNPELLVKTLRQLRRRVDVNTEVGVVRDVSLKELRVYTDYGRCSRPLF 120

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVE QRLLIKK DI++LQQRES E+G WH LV KG++EYIDTEEEETTMISMTI DL  A
Sbjct: 121 IVENQRLLIKKMDILSLQQRESEEEG-WHSLVEKGYVEYIDTEEEETTMISMTIADLAFA 179

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R +PEEAY  TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+YVTNYQ
Sbjct: 180 RENPEEAYCTTYTHCEIHPSMILGVSASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQ 239

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDT AYVLYYPQKPLVTT A EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240 LRMDTQAYVLYYPQKPLVTTHATEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRGFFRSLFFRSYRDEEK+MGTLV+E+FGRP+R NTMGMRHGSYDKLDDDG APPGTR+S
Sbjct: 300 DRGFFRSLFFRSYRDEEKRMGTLVQEEFGRPNRENTMGMRHGSYDKLDDDGFAPPGTRIS 359

Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           G+DVIIGKT+PI Q+E  GQ S++T+RDHSISLRHSE+G+VDQVL TTNA+GLRF K+RV
Sbjct: 360 GDDVIIGKTSPIPQEELPGQLSKFTKRDHSISLRHSESGVVDQVLYTTNAEGLRFTKIRV 419

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RSVRI QIGDKFSSRHGQKGTVGMTYTQEDMPWT++GITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420 RSVRILQIGDKFSSRHGQKGTVGMTYTQEDMPWTIDGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           C+MGKVAA +GKEGDATPFT+VTVD I K LH+CG+QMRGFETMYNGHTGRRL AMIF+G
Sbjct: 480 CVMGKVAAEVGKEGDATPFTEVTVDGICKRLHECGFQMRGFETMYNGHTGRRLPAMIFVG 539

Query: 699 PTYYQRLKHMVDDKIH 714
           PTYYQRLKHMVDDKIH
Sbjct: 540 PTYYQRLKHMVDDKIH 555


>gi|56694350|gb|AAW22915.1| RNA polymerase II second largest subunit [Cephalotaxus fortunei]
          Length = 533

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/536 (90%), Positives = 510/536 (95%), Gaps = 3/536 (0%)

Query: 178 NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 237
           NLALMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV
Sbjct: 1   NLALMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLV 60

Query: 238 KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 297
           +TLR+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK DI  LQ 
Sbjct: 61  RTLRQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKVDINNLQA 120

Query: 298 RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
             S EDG WH+LV +GFIEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHP
Sbjct: 121 --SREDG-WHELVTQGFIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHP 177

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVT
Sbjct: 178 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVT 237

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+
Sbjct: 238 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKR 297

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
           MGTLVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE+ G
Sbjct: 298 MGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESGG 357

Query: 538 QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
           Q S+YT+RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQK
Sbjct: 358 QVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQK 417

Query: 598 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
           GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF
Sbjct: 418 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 477

Query: 658 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           TDVTVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKI
Sbjct: 478 TDVTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKI 533


>gi|56694326|gb|AAW22903.1| RNA polymerase II second largest subunit [Dioon edule]
          Length = 538

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/538 (90%), Positives = 508/538 (94%), Gaps = 1/538 (0%)

Query: 178 NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 237
           NLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDP++LV
Sbjct: 1   NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGCWVGIHRDPDLLV 60

Query: 238 KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 297
           KTLR+LRR+VDVNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVE QRLLIKK DI  LQQ
Sbjct: 61  KTLRQLRRQVDVNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVENQRLLIKKSDIRRLQQ 120

Query: 298 RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCEIH 356
           R++    GWH+LV KGFIEY+DTEEEETTMISMTI DLV AR  P  A +   YTHCEIH
Sbjct: 121 RDNLPPPGWHELVTKGFIEYVDTEEEETTMISMTIYDLVNARNSPPTAASIVKYTHCEIH 180

Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
           PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLV
Sbjct: 181 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLV 240

Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
           TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF+RSYRDEEK
Sbjct: 241 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEK 300

Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ 536
           +MGTLVKE+FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++QDE+ 
Sbjct: 301 RMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESG 360

Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           GQA+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQ
Sbjct: 361 GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 420

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGTVGMTY QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP
Sbjct: 421 KGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 480

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 481 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 538


>gi|46277249|gb|AAS86815.1| RNA polymerase II second largest subunit, partial [Selaginella
           densa]
          Length = 547

 Score = 1017 bits (2629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/549 (87%), Positives = 514/549 (93%), Gaps = 2/549 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALM YITVGSAA PIL FLEEW TENFEEISPA IP +TKIFVNG 
Sbjct: 1   ETPEGQACGLVKNLALMAYITVGSAANPILVFLEEWSTENFEEISPAAIPNSTKIFVNGS 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR+P+ LVKTLR+LRR+VDVNTEVGVVRD RLKELR+YTDYGRCSRPLFIVEKQRL
Sbjct: 61  WVGIHREPDNLVKTLRQLRRQVDVNTEVGVVRDTRLKELRLYTDYGRCSRPLFIVEKQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK DI  LQQ+E+ E+G WHDLV KGFIE++DTEEEETTMISMTINDLV ARL+P +A
Sbjct: 121 LIKKSDIRTLQQKEAGENG-WHDLVTKGFIEFVDTEEEETTMISMTINDLVNARLNPGDA 179

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y+ TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 180 YS-TYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 238

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 239 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 298

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           +F+RSYRDEE+K GTLVKE+F +P R +T  MRHGSY+KLDDDG+ PPGTRVSGEDVIIG
Sbjct: 299 IFYRSYRDEERKQGTLVKEEFEKPSRDSTKDMRHGSYEKLDDDGITPPGTRVSGEDVIIG 358

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTP+ QDE   QA RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVK+RVRS+RIPQ
Sbjct: 359 KTTPLGQDETGAQAQRYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQ 418

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMP+T EGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 419 IGDKFSSRHGQKGTVGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 478

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           A MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIF+GPTYYQRL
Sbjct: 479 ALMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFIGPTYYQRL 538

Query: 706 KHMVDDKIH 714
           KHMVDDKIH
Sbjct: 539 KHMVDDKIH 547


>gi|429964497|gb|ELA46495.1| hypothetical protein VCUG_02039 [Vavraia culicis 'floridensis']
          Length = 1194

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/885 (55%), Positives = 627/885 (70%), Gaps = 66/885 (7%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+G   FCET+KA++FGY+I RLL CA+ R   DDRDHYG KR+DLAGPLL  LF++
Sbjct: 320  FLPHIGDKQFCETRKAFFFGYMIQRLLNCAMKRVTPDDRDHYGKKRMDLAGPLLAQLFKV 379

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKL ++   ++QKC++N +D N+   +K   IT G +YSLATGNWG QA A  T+AGV
Sbjct: 380  LFRKLCQETIKHMQKCIENKRDFNIALGLKTSIITQGFRYSLATGNWGEQARAMQTKAGV 439

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVLNR  + STLSHLRR+NSP+GREGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 440  AQVLNRYNFISTLSHLRRVNSPMGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 499

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +L+ YI+V      ++E LEE+G ++ EE++ + + +ATK+FVNG W+GI  + E L   
Sbjct: 500  SLLAYISVNHPIEGVVELLEEFGLKSLEEVAASEVNKATKVFVNGTWLGITTEREFLYTV 559

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+R++R+  ++ +V +V+ +R KE+RI  D GR  RP F+VE  R+L        L++ +
Sbjct: 560  LKRMKRQARIHKDVSIVQSLRDKEIRILCDAGRPCRPCFVVENNRILFTAEHANMLREGK 619

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMT---------INDLVQARLHPEEAYA--- 347
                  W DLV  G +EY+D EEE+  MI M+         + D V A L  E   +   
Sbjct: 620  MI----WEDLVNNGIVEYLDVEEEDQAMICMSPDELYKQQMVTDRVNAELRGERGESVER 675

Query: 348  --------------------------DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                                        YTHCEIHPS+ILG+CAS+IPFPDHNQSPRNTY
Sbjct: 676  SKGHASRNMGKHIAPATPGDDLHDLITNYTHCEIHPSMILGICASMIPFPDHNQSPRNTY 735

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAM KQAMG+Y TN+  RMD+L+ +L+YPQKPLVTTRAME+L FR+LPAG NAIVAIAC
Sbjct: 736  QSAMSKQAMGVYATNFLLRMDSLSNILFYPQKPLVTTRAMEYLRFRELPAGQNAIVAIAC 795

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            Y+GYNQEDSVIMNQS+IDRG FRS  +R+Y D+E   G    E F +P R   + M++ +
Sbjct: 796  YTGYNQEDSVIMNQSAIDRGLFRSFLYRTYTDQETMNGPGCVEVFAKPRRGEVLRMKNLN 855

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ----------DEAQGQ------ASRYTRR 545
            YDKLD+DG+  PG RV+GEDV+IGK  P+ +          D   G+      A+  + +
Sbjct: 856  YDKLDEDGIVNPGARVTGEDVLIGKILPVIERTGADGGALIDNKDGKINTESNATNVSWK 915

Query: 546  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 605
            D S ++R +E G+VD V++T N +G +F KV++RS R+P++GDKF+SRHGQKGT+G+T  
Sbjct: 916  DASTAMRPTEEGVVDSVIVT-NREGYKFTKVKIRSCRVPEMGDKFASRHGQKGTIGITLR 974

Query: 606  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 665
             EDMP+T EGI PDII+NPH IPSRMTIG LIEC++GKV+A  G+EGD TPF+DVTV+ I
Sbjct: 975  AEDMPFTSEGIIPDIIINPHCIPSRMTIGHLIECLLGKVSALAGEEGDGTPFSDVTVEAI 1034

Query: 666  SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 725
            S+ L   GY+ RG ETMYNG TGR+L A IF+GPTYYQRLKHMV DK+H+R  GP+Q+LT
Sbjct: 1035 SEQLKDFGYEHRGLETMYNGMTGRKLDAQIFIGPTYYQRLKHMVQDKVHARAHGPLQVLT 1094

Query: 726  RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLK 785
            RQPAEGRSRDGGLRFGEMERDC+I+HG S FL+ERLF+ SD + + VCE CGL  + +  
Sbjct: 1095 RQPAEGRSRDGGLRFGEMERDCIISHGTSLFLRERLFEVSDFFSLIVCEQCGLFCLED-- 1152

Query: 786  KNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKED 830
                 C+GC NKT +  V +PYA KLL QELM M IAPR+   +D
Sbjct: 1153 ----GCKGCGNKTKLAIVEMPYAFKLLLQELMGMNIAPRLRLCDD 1193


>gi|440493525|gb|ELQ75984.1| RNA polymerase II, second largest subunit, partial
            [Trachipleistophora hominis]
          Length = 1381

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/882 (55%), Positives = 626/882 (70%), Gaps = 63/882 (7%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+G   FCET+KA++FGY+I RLL CA+ R + DDRDHYG KR+DLAGPLL  LF++
Sbjct: 510  FLPHIGDKQFCETRKAFFFGYMIQRLLNCAMKRVSPDDRDHYGKKRMDLAGPLLAQLFKV 569

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LFRKL ++   ++QKC++N +D N+   +K   IT G +YSLATGNWG Q+ A  T+AGV
Sbjct: 570  LFRKLCQETIKHMQKCIENKRDFNIALGLKTSIITQGFRYSLATGNWGEQSRAMQTKAGV 629

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVLNR  + STLSHLRR+NSP+GREGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 630  AQVLNRYNFISTLSHLRRVNSPMGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 689

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +L+ YI+V      I+E LEE+G ++ EE++P+ + +ATK+FVNG W+GI  + E L   
Sbjct: 690  SLLAYISVNHPIEGIVELLEEFGLKSLEEVAPSEVYKATKVFVNGTWLGITTEREFLYTV 749

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+R++R+  ++ +V +V+ +R KE+RI  D GR  RP F+VE  R+L        L++ +
Sbjct: 750  LKRMKRQARIHKDVSIVQSLRDKEIRILCDVGRPCRPCFVVENNRILFTAEHANMLREGK 809

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMT---------INDLVQARLHPEEA----- 345
                  W DLV  G +EY+D EEE+  MI M+         + D + A L  E       
Sbjct: 810  MI----WEDLVNNGIVEYLDVEEEDQAMICMSPEELYEQQMVTDRINAELRGESVERPRE 865

Query: 346  ---------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
                                     YTHCEIHPS+ILG+CAS+IPFPDHNQSPRNTYQSA
Sbjct: 866  RVLKHTSKHVGSVYPGNDPHDLITNYTHCEIHPSMILGICASMIPFPDHNQSPRNTYQSA 925

Query: 385  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
            M KQAMG+Y TN+  RMD+L+ +L+YPQKPLVTTRAME+L FR+LPAG NAIVAIACY+G
Sbjct: 926  MSKQAMGVYATNFLLRMDSLSNILFYPQKPLVTTRAMEYLRFRELPAGQNAIVAIACYTG 985

Query: 445  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
            YNQEDSVIMNQS+IDRG FRS  +R+Y D+E   G    E F +P R   + M++ +YDK
Sbjct: 986  YNQEDSVIMNQSAIDRGLFRSFLYRTYTDQETMNGPGCVEVFAKPRRGEVLRMKNLNYDK 1045

Query: 505  LDDDGLAPPGTRVSGEDVIIGKTTPI-------------SQDE---AQGQASRYTRRDHS 548
            LD+DG+  PG RV+GEDV+IGK  P+             ++DE    +      + +D S
Sbjct: 1046 LDEDGIVNPGVRVTGEDVLIGKILPVIERMDVNGNSLIDNRDEKINTESNTMNVSWKDAS 1105

Query: 549  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
             ++R +E G+VD V++T N +G +F KV++RS R+P++GDKF+SRHGQKGT+G+T   ED
Sbjct: 1106 TAMRPTEEGVVDSVIVT-NREGYKFTKVKIRSCRVPEMGDKFASRHGQKGTIGITLRAED 1164

Query: 609  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
            MP+T EGI PDII+NPH IPSRMTIG LIEC++GKV+A  G+EGD TPF+DVTV  IS+ 
Sbjct: 1165 MPFTSEGIIPDIIINPHCIPSRMTIGHLIECLLGKVSALAGEEGDGTPFSDVTVGAISEQ 1224

Query: 669  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
            L   GY+ RG ETMYNG TGR+L A IF+GPTYYQRLKHMV DK+H+R  GP+Q+LTRQP
Sbjct: 1225 LKDFGYEHRGLETMYNGMTGRKLDAQIFIGPTYYQRLKHMVQDKVHARAHGPLQVLTRQP 1284

Query: 729  AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNS 788
            AEGRSRDGGLRFGEMERDC+I+HG S FL+ERLF+ SD + + VCE CGL  + +     
Sbjct: 1285 AEGRSRDGGLRFGEMERDCIISHGTSLFLRERLFEVSDFFSLVVCEQCGLFCLED----- 1339

Query: 789  FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKED 830
              C+GC NKT +  V +PYA KLL QELM M IAPR+   +D
Sbjct: 1340 -GCKGCGNKTKLAIVEMPYAFKLLLQELMGMNIAPRLRLCDD 1380


>gi|56694320|gb|AAW22900.1| RNA polymerase II second largest subunit [Microcycas calocoma]
          Length = 545

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/545 (89%), Positives = 508/545 (93%), Gaps = 9/545 (1%)

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHR
Sbjct: 1   ACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGCWVGIHR 60

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           DP++LVKT R+LRR+VDVNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVE QRLLIKK D
Sbjct: 61  DPDLLVKTXRQLRRQVDVNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVENQRLLIKKPD 120

Query: 292 IIALQQRE-----SPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 342
           I  LQQR+     SP+D     GWH+LV KGFIEY+DTEEEETTMISMTINDLV AR  P
Sbjct: 121 IRRLQQRDQLPPPSPDDENSVRGWHELVTKGFIEYVDTEEEETTMISMTINDLVNARNSP 180

Query: 343 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
                  YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMD
Sbjct: 181 TATSIVKYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 240

Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
           TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF
Sbjct: 241 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 300

Query: 463 FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 522
           FRSLF+RSYRDEEK+MGTLVKE+FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDV
Sbjct: 301 FRSLFYRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDV 360

Query: 523 IIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 582
           IIGKTTP++QDE+ GQA+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR
Sbjct: 361 IIGKTTPVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 420

Query: 583 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 642
           IPQIGDKFSSRHGQKGTVGMTY QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG
Sbjct: 421 IPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 480

Query: 643 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 702
           KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYY
Sbjct: 481 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYY 540

Query: 703 QRLKH 707
           QRLKH
Sbjct: 541 QRLKH 545


>gi|384096572|gb|AFH66782.1| RNA polymerase II second largest subunit, partial [Rhizidium
           endosporangiatum]
          Length = 911

 Score = 1016 bits (2626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/758 (65%), Positives = 591/758 (77%), Gaps = 23/758 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVGT    ET+KAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAG LL GLFRM
Sbjct: 156 MLPHVGTKAHTETRKAYFFGYMIHRLLLAALERREFDDRDHFGKKRLDLAGALLSGLFRM 215

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV   +QKC++  ++ N++ A+ A  I +GLKYSLATGNWG Q+ A   RAGV
Sbjct: 216 LFRKLTKDVSRTLQKCMETNRNFNIKTAVDANIIKNGLKYSLATGNWGEQSKAMQARAGV 275

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            QVLNR T+ASTLSHLRR+N+PIGREGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 276 GQVLNRYTFASTLSHLRRMNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 335

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  ITVG    P +EFLEEW  EN EE+ P+ IP ATK+F+NG WVG+HRDP+MLV T
Sbjct: 336 SLMAVITVGCPTLPFVEFLEEWTMENLEEVGPSTIPDATKVFLNGVWVGVHRDPDMLVNT 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK--KRDIIALQQ 297
           LR LRRRVDVN EV +VRD+   ELR+YTD GR  RPLFIV+ + + +K  K  I  L  
Sbjct: 396 LRELRRRVDVNAEVSIVRDVAENELRLYTDAGRICRPLFIVDNETMTLKLTKEHIERLND 455

Query: 298 RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--LH----------PEEA 345
           +E+P    ++DL+ +G I  IDTEEEET MI+MT  DL  +R  +H           E A
Sbjct: 456 KETP--ASFNDLLCEGVIGLIDTEEEETIMIAMTPEDLDMSRRIVHGLPVVRHQGITERA 513

Query: 346 YA----DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 401
            +      +THCEIHPS+ILG+CASIIPFPDHNQSPRN YQSAMGKQAMGI+ TN+  RM
Sbjct: 514 KSIPTVHNWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGIFNTNFHQRM 573

Query: 402 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 461
           DT+  +L+YPQKPL  TR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQSSIDRG
Sbjct: 574 DTMTNILFYPQKPLAATRSMEYLRFRELPAGQNAIVAIGCYSGYNQEDSLIMNQSSIDRG 633

Query: 462 FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 521
            FRSL++R Y D EKK G    E F +P R +T+ +RHG+Y+KLD+DG+  PG RVSGED
Sbjct: 634 LFRSLYYRVYMDTEKKEGLTTTETFEKPTRDSTLRLRHGTYEKLDEDGIIAPGVRVSGED 693

Query: 522 VIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 579
           +IIGKT PI  D E  GQ  S +T+RD S  L+ +E+G+VDQV++TTN DG +FVKVRVR
Sbjct: 694 IIIGKTVPIPLDSEELGQRTSTHTKRDASTPLKSTESGIVDQVVVTTNHDGFKFVKVRVR 753

Query: 580 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 639
           SVR+PQIGDKF+SRHGQKGT G+TY  EDMP+T +GITPDIIVNPHAIPSRMTIG L+EC
Sbjct: 754 SVRVPQIGDKFASRHGQKGTCGITYRMEDMPFTRDGITPDIIVNPHAIPSRMTIGHLVEC 813

Query: 640 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 699
           ++GKVA   G+EGDATPFT V V +IS  L   G+Q RGFE +YNGHTGR+L A +F GP
Sbjct: 814 LLGKVATMTGREGDATPFTSVNVADISNELASYGFQQRGFEVLYNGHTGRKLNAQLFFGP 873

Query: 700 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
           TYYQRLKHMVDDKIH R RGP+QIL RQP EGRSRDGG
Sbjct: 874 TYYQRLKHMVDDKIHLRARGPMQILVRQPVEGRSRDGG 911


>gi|6606123|gb|AAF19074.1|AF107802_1 DNA-dependent RNA polymerase II RPB140 [Lasiodiplodia theobromae]
          Length = 942

 Score = 1016 bits (2626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/786 (62%), Positives = 592/786 (75%), Gaps = 46/786 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  ETKKA++ GY+I+RLL C LGRR EDDRDH+G KRLDLAGPLL  LFR 
Sbjct: 157 FLPHISQAEGSETKKAFFLGYMIYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRS 216

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLTRDV +Y++KCV+ G+  +LQ A+K  TIT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 217 LFLKLTRDVFSYLKKCVEAGRPFSLQSAVKQGTITNGLKYSLATGNWGDQKKAASAKAGV 276

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 277 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 336

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  +TVGS   PI +F+ +   E  EE  P V P ATKIF+NG WVG+HRDP  LV  
Sbjct: 337 SLMCNVTVGSDVTPIQDFMTQRNMELLEEYEPNVSPHATKIFINGVWVGVHRDPTQLVSV 396

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKR-- 290
           +++LRR   ++ E+ ++RD+R +E +I+TD GR  RPLFI++       K  L + +   
Sbjct: 397 VKKLRRDGTLSPEMSLIRDVRDREFKIFTDAGRVCRPLFIIDDDPFSPNKGNLALTREHI 456

Query: 291 ---------DIIALQQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLV---Q 337
                    D+  L   E  E   GW  L+  G +EY+D EEEE  MI MT +DL    +
Sbjct: 457 DKLEADQEIDVSGLSDEERQEKRYGWQGLLHSGVVEYMDAEEEEVAMIVMTPDDLRAHHR 516

Query: 338 AR---------------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
           AR                     + P       YTHCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 517 ARQGIIDEDDEETKRNRDPHERVVPPPNPSVKQYTHCEIHPSMILGICASIIPFPDHNQS 576

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMG+ +TNY+ RMDT+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 577 PRNTYQSAMGKQAMGVCLTNYELRMDTMVNVLYYPQKPLATTRSMEYLRFRELPAGQNAI 636

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EKK+G  V E F +P RS+TM 
Sbjct: 637 VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKVGMAVVEQFEKPMRSDTMR 696

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR +
Sbjct: 697 LKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKMHIKRDVSTPLRST 756

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VD VLLTTN+DGL+FVKVR R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T E
Sbjct: 757 ENGIVDSVLLTTNSDGLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTRE 816

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           G+TPD+I+NPHAIPSRMTI  LIEC++ KV A  G EGDATPFTDVTV  +S  L + GY
Sbjct: 817 GLTPDLIINPHAIPSRMTIAHLIECLLSKVGALRGXEGDATPFTDVTVXQVSSLLREHGY 876

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
           Q RGFE MYNGHTG++LTA +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+R
Sbjct: 877 QSRGFEIMYNGHTGKKLTAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRAR 936

Query: 735 DGGLRF 740
           DGGLRF
Sbjct: 937 DGGLRF 942


>gi|56694360|gb|AAW22920.1| RNA polymerase II second largest subunit [Larix occidentalis]
          Length = 534

 Score = 1014 bits (2623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/535 (89%), Positives = 505/535 (94%), Gaps = 1/535 (0%)

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALMVYITVGS+  PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LVKT
Sbjct: 1   ALMVYITVGSSPNPILEFLEEWSTENFEEISPAVIPTATKIFVNGCWVGIHRDPELLVKT 60

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           LR+LRR+VDVN EVGVVRDIRLKELR+YTDYGRCSRPLF+VEKQRL IKK DI  LQ+R 
Sbjct: 61  LRQLRRQVDVNPEVGVVRDIRLKELRLYTDYGRCSRPLFVVEKQRLSIKKSDINRLQERT 120

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
           SP D GWHDLV +GFIEY+DTEEEETTMISMTINDLV AR +P EAY+ TYTHCEIHPSL
Sbjct: 121 SP-DEGWHDLVTRGFIEYVDTEEEETTMISMTINDLVSARNNPAEAYSHTYTHCEIHPSL 179

Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
           ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTR
Sbjct: 180 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTR 239

Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
           AMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MG
Sbjct: 240 AMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMG 299

Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
           TLVKE+FG P+R NT+ MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++Q+E  GQ 
Sbjct: 300 TLVKEEFGCPNRENTLNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVAQEETTGQQ 359

Query: 540 SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
            RY +RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGT
Sbjct: 360 QRYIKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGT 419

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           VGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD
Sbjct: 420 VGMTYTQEDMPWTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 479

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           VTVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 480 VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIH 534


>gi|449016392|dbj|BAM79794.1| RNA polymerase II second largest subunit [Cyanidioschyzon merolae
            strain 10D]
          Length = 1184

 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/842 (59%), Positives = 621/842 (73%), Gaps = 24/842 (2%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+G G + E  KA++ GY+ H+LL   LGRR EDDRDHYG KRLDLAGPLL GLFR 
Sbjct: 345  FLPHIGIGAY-EPAKAWFLGYMTHQLLATVLGRREEDDRDHYGLKRLDLAGPLLTGLFRQ 403

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            LF+K+ +D R+ +Q  +D GK++N+  A+K +TIT  LKY++ATGNW     A  R GVS
Sbjct: 404  LFQKVVKDARSILQHQLDMGKELNIALAVKGRTITDNLKYAIATGNWRADRKAAVRTGVS 463

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLNRLTYA++LSHLRRLNSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQ+CGLVKNLA
Sbjct: 464  QVLNRLTYAASLSHLRRLNSPIGREGKLAKPRQLHNTQWGMICPAETPEGQSCGLVKNLA 523

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VG+    ILE L  +  E   E++   I + TK+F+NG WVGIH  PE LV  L
Sbjct: 524  LMAYISVGTPVADILEMLYNFEMEPLYEVTAERIKRQTKVFLNGSWVGIHPRPEELVTAL 583

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV--EKQRLLIKKRDIIALQQR 298
            R LRR  ++  EV +V D+   ELRI TD GR  RPLFIV  E   L I+K+ I  L+  
Sbjct: 584  RVLRRSGEIADEVSIVFDVSHGELRIGTDAGRVCRPLFIVDTETNLLRIRKQHIDLLRDY 643

Query: 299  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            E+     +  LV +G +EY+D  EEET MI+M    L  +  H       TYTH EIHPS
Sbjct: 644  ET-TGYTFSRLVREGLVEYLDVNEEETVMIAMDQEHLATSGDHA------TYTHMEIHPS 696

Query: 359  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
            +I GVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDT+A+VLYYPQKPLVTT
Sbjct: 697  MIFGVCASIIPFPDHNQSPRNTYQSAMGKQAMGMYLTNYNLRMDTMAHVLYYPQKPLVTT 756

Query: 419  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
            R MEHL FR LPAGINA+VAIACYSGYNQEDS+IM+Q+++DRG FRS++++++++EE+K 
Sbjct: 757  RVMEHLQFRTLPAGINAVVAIACYSGYNQEDSLIMSQAAVDRGLFRSVYYKTFKEEEQKK 816

Query: 479  GTLVKEDFGRPDRSNTMGMRHG-SYDKLDDDGLAPPGTRVSGEDVIIGKTTPI------- 530
                +E   +PD + T+GM+   +Y KL+ DGL   G RV G DV++GKT P+       
Sbjct: 817  LFGQQETISKPDPAVTLGMKEAHAYSKLESDGLIGVGERVRGGDVLVGKTAPLGASRAAV 876

Query: 531  ---SQDEAQGQAS---RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
                Q+ A G A+     TR+D S+ ++ +E G+ D+VL+ T   G R VKVRVR+  IP
Sbjct: 877  DAAEQETASGMAALSGMRTRKDCSLVMKRTERGVTDKVLICTGEAGTRMVKVRVRTELIP 936

Query: 585  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
            Q+GDKF+SRHGQKGT+G+   +ED+P+ V+GI PDII+NPHA+PSRMTI  LIE ++GKV
Sbjct: 937  QVGDKFASRHGQKGTMGLCMPEEDLPFNVDGIRPDIIMNPHAVPSRMTIAHLIEALLGKV 996

Query: 645  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
             A  G EGDAT FT VTVD I + L + GY  RG+E ++NG TGR + A IF+G  YYQR
Sbjct: 997  CALSGVEGDATAFTPVTVDAIGRELVRHGYDPRGWELLFNGQTGRPMNAAIFMGVNYYQR 1056

Query: 705  LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 764
            L+H+V  K+ +R RG VQ+LTRQP EG+SR GGLR GEME+D  +A+GAS  LKER+ D 
Sbjct: 1057 LRHVVYQKLGARARGAVQVLTRQPVEGKSRGGGLRIGEMEKDVFVAYGASAVLKERMCDV 1116

Query: 765  SDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPR 824
            SD YRVHVCE CGLIAIA+L+++ FECRGCKNKT I  V IPYACKLLFQELM+MAIAPR
Sbjct: 1117 SDKYRVHVCERCGLIAIADLRRSIFECRGCKNKTRIAAVEIPYACKLLFQELMSMAIAPR 1176

Query: 825  ML 826
            M+
Sbjct: 1177 MV 1178


>gi|40388703|gb|AAR85529.1| RNA polymerase II [Botryotinia fuckeliana]
          Length = 952

 Score = 1013 bits (2619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/788 (61%), Positives = 604/788 (76%), Gaps = 42/788 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 165 LLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRN 224

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFR+LT DV  Y+Q+CV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q  AA + AGV
Sbjct: 225 LFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGV 284

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 285 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 344

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVGIHRDP  LVK 
Sbjct: 345 ALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGIHRDPAHLVKC 404

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRR   ++ EV ++R+IR +E +I+TD GR  RPL +++       K  L++ K  I
Sbjct: 405 VQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSANKGNLVLNKDHI 464

Query: 293 IALQ----------QRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
             L+          + E   +G  G+  L+  G +EY+D EEEET MI+MT  DL  +R 
Sbjct: 465 RRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQ 524

Query: 340 ------LHPEEA-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                 + P+E+              A  +THCEIHPS+ILG+CASIIPFPDHNQSPRN 
Sbjct: 525 LQAGYQIRPDESGDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNC 584

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI 
Sbjct: 585 YQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIM 644

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+T+ ++ G
Sbjct: 645 CYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQG 704

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKLDDDG+  PG RV+G D+IIGKT PI+ D E  GQ ++ + +RD S  LR +E+G+
Sbjct: 705 TYDKLDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGL 764

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY Q+DMP+T EG+ P
Sbjct: 765 VDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVP 824

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTI  LIEC + KV+   G EGDATPFT+VTVD++SK L   GY  RG
Sbjct: 825 DLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPFTEVTVDSVSKLLRAHGYHSRG 884

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
           FE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGL
Sbjct: 885 FEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGL 944

Query: 739 RFGEMERD 746
           RFGEMERD
Sbjct: 945 RFGEMERD 952


>gi|418204392|gb|AFX61750.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            torchioi]
          Length = 1137

 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/782 (62%), Positives = 597/782 (76%), Gaps = 42/782 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL GLFR 
Sbjct: 356  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAGLFRT 415

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  AA ++AGV
Sbjct: 416  LFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGV 475

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 476  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 535

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T
Sbjct: 536  ALMCSITVGTPSEPIIDFMIQRNMEVLEEYEPQVSPNATKVFVNGVWVGVHRDPAHLVST 595

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+V+          L + K  I
Sbjct: 596  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVDNDPKSENCGSLALTKEHI 655

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +E P D           GW  LV  G IEY+D EEEET MI MT  DL     +
Sbjct: 656  HKLEADKELPPDLDPEERRERYFGWDGLVKSGVIEYVDAEEEETIMIVMTPEDLETSKQI 715

Query: 337  QARLHPEE--AYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
             A + PEE  A+AD              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 716  AAGMMPEEYDAHADPNRRVRSQLTQKAHTFTHCEIHPSMILGICASIIPFPDHNQSPRNT 775

Query: 381  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
            YQSAMGKQAMG+++TN+  RM+T+A ++YYPQKPL TTR+ME L FR+LPAG NAIVAIA
Sbjct: 776  YQSAMGKQAMGVFLTNFDQRMETMANIIYYPQKPLATTRSMEFLKFRELPAGQNAIVAIA 835

Query: 441  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
            CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG
Sbjct: 836  CYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPLRSDTLRMKHG 895

Query: 501  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGM 558
            +YDKLD DG+  PG RVSGED+IIGKT P++ + E QG  ++ +T+ D S  LR +E G+
Sbjct: 896  TYDKLDHDGIVCPGVRVSGEDIIIGKTAPLAPESEEQGMRTKSHTKLDVSTPLRSTENGI 955

Query: 559  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
            VDQVLL+T+ D L+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 956  VDQVLLSTSNDDLKFVKVRMRATKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVP 1015

Query: 619  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
            D+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD++S  L + GYQ RG
Sbjct: 1016 DLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSGLLREHGYQSRG 1075

Query: 679  FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
            FE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGL
Sbjct: 1076 FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGL 1135

Query: 739  RF 740
            RF
Sbjct: 1136 RF 1137


>gi|387593606|gb|EIJ88630.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
            ERTm3]
 gi|387597261|gb|EIJ94881.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
            ERTm1]
          Length = 1137

 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/826 (59%), Positives = 636/826 (76%), Gaps = 25/826 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHVGT +FCETKKAY FGY I++LL+ ALGRR+E+DRDHYG KRLDLAGPL+ GLFRM
Sbjct: 328  FLPHVGTKEFCETKKAYLFGYTINKLLMVALGRRSEEDRDHYGRKRLDLAGPLMTGLFRM 387

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+K++ ++  Y+Q+C+D  KD+NL   ++  T+T+GL+YSLATGNWG Q+ +   RAGV
Sbjct: 388  LFKKMSNELAKYMQRCIDGNKDLNLIVGLRTSTLTNGLRYSLATGNWGEQSKSMQARAGV 447

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVLNR  Y STLSHLRR+N+PIGR+GKLAKPRQLH+S WGM+CPAETPEGQACGLVKN 
Sbjct: 448  AQVLNRYNYISTLSHLRRVNTPIGRDGKLAKPRQLHSSHWGMVCPAETPEGQACGLVKNF 507

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM +++VG+++  ++E LEE G E  EE+SP+ I  ATK+ VNG WVG+HR P+ L+ T
Sbjct: 508  ALMSHVSVGTSSSVVVELLEECGLEGLEEVSPSAIVGATKVLVNGSWVGVHRSPDDLMGT 567

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L+ LRR  ++++E+ +VRD+R KE+RI TD GR  RPLFIV+K  L I+ R + A + R+
Sbjct: 568  LKYLRRSGELSSEIAIVRDLREKEIRINTDGGRACRPLFIVDKGVLRIE-RFLEANRHRK 626

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
                  W +L+A G +E++D EEEET MI++   DL    +         YTHCEI P+ 
Sbjct: 627  FT----WDELMADGCVEFLDVEEEETAMIAVKPGDLKNTDV--------MYTHCEIQPAT 674

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            +LGVCAS++PFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMD+L+ VL YPQKPLV T+
Sbjct: 675  MLGVCASVVPFPDHNQSPRNTYQSAMGKQAMGMYATNFLMRMDSLSNVLCYPQKPLVITQ 734

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +M  L FR+LP+G NA+VAIACYSGYNQEDSV+MN+ ++DRG FRS F+R+Y D E +  
Sbjct: 735  SMNFLRFRELPSGQNAMVAIACYSGYNQEDSVVMNRGAVDRGLFRSFFYRTYSDMESRTK 794

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
               +E F +PDR +   M++ +Y+KLD DGL PPGTRVSGEDV+IGKT  +S  +     
Sbjct: 795  PEEQECFMKPDRRSVQRMKNANYEKLDMDGLVPPGTRVSGEDVLIGKT--VSTPDGY--- 849

Query: 540  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
                 +D S ++R +E+G+VD+V+LTT  DG R+ ++RVRS R PQ+GDKF+SRHGQKGT
Sbjct: 850  -----KDASTTMRGTESGVVDRVILTTK-DGYRYARIRVRSARTPQMGDKFASRHGQKGT 903

Query: 600  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
            +G+  + EDMP+T +GITPDII+NPHAIPSRMTIG L+EC++GKV+   GKEGDATPFT 
Sbjct: 904  IGIMLSPEDMPFTADGITPDIIINPHAIPSRMTIGHLVECLLGKVSCMSGKEGDATPFTG 963

Query: 660  VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 719
            ++V+ IS+ L K GYQ RGFE MY+G TGR++ + IF+GPTYYQRLKHMV DKIH+R  G
Sbjct: 964  LSVEEISEELQKHGYQKRGFEVMYSGFTGRKMRSQIFIGPTYYQRLKHMVADKIHARAHG 1023

Query: 720  PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
            PVQILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERL D SD + V +C  CG+ 
Sbjct: 1024 PVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAATFLKERLCDVSDKFEVFICNDCGVF 1083

Query: 780  AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
               N ++  + C+ C  +T +  V++PYA KLL QE+MAM I+ +M
Sbjct: 1084 CAGNKERGLYLCQLCGTRTSVSMVYMPYAFKLLVQEMMAMCISVQM 1129


>gi|520505|gb|AAC83398.1| RNA polymerase II, second largest subunit, partial [Artemia salina]
          Length = 862

 Score = 1012 bits (2616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/714 (68%), Positives = 572/714 (80%), Gaps = 13/714 (1%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPL+  LFR 
Sbjct: 154 MLPHVGISDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMSLLFRG 213

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+ LT++VR Y QK +D GKD N++ AIK K IT GLKYSLATGNWG Q  A   RAGV
Sbjct: 214 LFKTLTKEVRMYAQKFIDRGKDFNIELAIKPKFITDGLKYSLATGNWGDQKKAHQARAGV 273

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 274 SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 333

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 334 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMTT 393

Query: 240 LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
           LR+LRR++D+  +EV +VRDI+ +E+RIYTD GR  RPL IVE QRLL+KK  I  L+++
Sbjct: 394 LRKLRRQMDIIVSEVSMVRDIQDREIRIYTDAGRICRPLLIVENQRLLLKKTHIEQLKEK 453

Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
           E   +  W+DLVA G +EY+DT EEET MI+M  +D+   RL   E Y  TYTHCEIHP+
Sbjct: 454 EY-NNFVWNDLVASGVVEYVDTLEEETAMIAMAPDDI---RLD-NEGYCATYTHCEIHPA 508

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VL YPQKPLVTT
Sbjct: 509 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLCYPQKPLVTT 568

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK- 477
           R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSV+MN S++DRGFFRS+FFRSY+D E K 
Sbjct: 569 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVLMNASAVDRGFFRSVFFRSYKDAETKR 628

Query: 478 -MGTLVKEDFGRPDRSNTMGMRH-GSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQD 533
            M    +E F +P R    GM+H  SYDKLD+DG+  PG RVSG+DV+IGKT   P + D
Sbjct: 629 AMAGASEETFEKPSRDTCQGMKHPQSYDKLDNDGIIAPGIRVSGDDVVIGKTVTMPENDD 688

Query: 534 EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 593
           E    A RY++RD S  LR+SETG+ DQV+LT N +G +F K+RVRSVRIPQIGDKF+SR
Sbjct: 689 ELSSAAKRYSKRDCSTFLRNSETGITDQVMLTLNTEGFKFCKIRVRSVRIPQIGDKFASR 748

Query: 594 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 653
           HGQKGT G+ Y QEDMP++ EG  PDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GD
Sbjct: 749 HGQKGTCGIQYRQEDMPFSAEGTAPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGD 808

Query: 654 ATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           ATPF D V V  IS  L   GYQ+RG E MYNG TGR+L + +FLGPTYYQRLK
Sbjct: 809 ATPFNDAVNVQKISNLLQDYGYQLRGNEVMYNGFTGRKLVSQVFLGPTYYQRLK 862


>gi|56694304|gb|AAW22892.1| RNA polymerase II second largest subunit [Dicksonia antarctica]
          Length = 525

 Score = 1012 bits (2616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/526 (90%), Positives = 501/526 (95%), Gaps = 1/526 (0%)

Query: 182 MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 241
           M YITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LV+TLR
Sbjct: 1   MSYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHREPELLVRTLR 60

Query: 242 RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP 301
           +LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK DI ALQQ+E+ 
Sbjct: 61  QLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKETT 120

Query: 302 EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 361
           E  GW+DLV KGFIEY+DTEEEETTMISMTI DLV ARLHPEEAY+DTYTHCEIHPS+IL
Sbjct: 121 E-AGWYDLVTKGFIEYVDTEEEETTMISMTIQDLVNARLHPEEAYSDTYTHCEIHPSMIL 179

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAM
Sbjct: 180 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAM 239

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           EHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSS+DRGFFRS+F+RSYRDEEKK GTL
Sbjct: 240 EHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFFRSIFYRSYRDEEKKQGTL 299

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR 541
           VKE+F RP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+   QA R
Sbjct: 300 VKEEFERPNRENTSGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTGSQAQR 359

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           Y++RD S  LRHSE+GMVDQVLLTTNADGLRFVK+RVRS+RIPQIGDKFSSRHGQKGTVG
Sbjct: 360 YSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVG 419

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           MTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT
Sbjct: 420 MTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 479

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           VDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLGPTYYQRLKH
Sbjct: 480 VDNISKALHKCGYQMRGFETMYNGHTGRRLNAMIFLGPTYYQRLKH 525


>gi|56675894|emb|CAD98811.2| RNA polymerase II, second largest subunit [Gardenia sp. Oxelman
           2319]
          Length = 545

 Score = 1011 bits (2615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/544 (94%), Positives = 528/544 (97%), Gaps = 4/544 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEG ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC
Sbjct: 1   ETPEG-ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 59

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHRDP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 60  WVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 119

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+DI ALQ RESP++ GWHDLVA+GFIEYIDTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 120 LIKKKDIQALQARESPDECGWHDLVARGFIEYIDTEEEETTMISMTINDLVTARLNPEEA 179

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 180 YSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 239

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 240 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 299

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 300 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 359

Query: 526 KTTPISQDEAQ---GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 582
           KTTPI QD+AQ     ASRYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVR
Sbjct: 360 KTTPIHQDDAQVPSALASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 419

Query: 583 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 642
           +PQIGDKFSSRHGQKGTVGMTYTQEDMP+T+EGITPDIIVNPHAIPSRMTIGQLIECIMG
Sbjct: 420 VPQIGDKFSSRHGQKGTVGMTYTQEDMPFTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 479

Query: 643 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 702
           KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR LTA IFLGPTYY
Sbjct: 480 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 539

Query: 703 QRLK 706
           QR K
Sbjct: 540 QRXK 543


>gi|83415469|gb|ABC17942.1| RNA polymerase II second largest subunit, partial [Basidiobolus
           ranarum]
          Length = 720

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/719 (66%), Positives = 577/719 (80%), Gaps = 23/719 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+D AGPLL  LFRML RKLT+DV  Y+QKC+D+ ++ NL  A+K+ TIT+GLKYSLAT
Sbjct: 2   KRMDPAGPLLAMLFRMLXRKLTKDVGRYLQKCIDSNREFNLTLAVKSNTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YI+VG+ + P++E L +W  E+ E+ S   I  ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMSYISVGNPSAPVVEVLADWAMESLEQFSANNIADATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVGIHRDP  L++T+RR RRRVD++ EV +VRDIR KE+R YTD GR  RPL++VE Q
Sbjct: 182 GVWVGIHRDPGNLIETMRRFRRRVDISPEVSIVRDIRDKEIRFYTDAGRVCRPLYVVENQ 241

Query: 284 RLLIKKRDIIALQQRE-SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 342
           R+ ++K  ++ALQ RE   E  GW DLV  G +EY+D EEEE +MI MT  DL ++R++ 
Sbjct: 242 RITLRKEHVVALQMREYDGEPFGWQDLVVNGIVEYLDAEEEEVSMICMTPEDLAESRMYS 301

Query: 343 EEAY-----AD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
           +  Y     AD              T+THCEIHPS+ILG CASIIPFPDHNQSPRNTYQS
Sbjct: 302 KLGYIPEREADIASRVKSSAALITHTWTHCEIHPSMILGTCASIIPFPDHNQSPRNTYQS 361

Query: 384 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
           AMGKQAMGIYVTNYQ RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAI CYS
Sbjct: 362 AMGKQAMGIYVTNYQLRMDTMANILYYPQKPLCTTRAMEYLRFRELPAGQNAIVAILCYS 421

Query: 444 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
           GYNQEDS+IMNQ+SIDRG FRS+F+RSY D+EKK+G +V E+F +P R +T+ ++ G+Y+
Sbjct: 422 GYNQEDSLIMNQTSIDRGLFRSIFYRSYMDQEKKVGMMVMEEFEKPTRESTLRLKRGTYE 481

Query: 504 KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 561
           KL+ DGL  PGTRVSG+D+IIGKT PI  D E  GQ ++ + +RD S  LR +E G+VDQ
Sbjct: 482 KLEGDGLIAPGTRVSGDDIIIGKTAPIPPDSEELGQRTKTHNKRDASTPLRSTENGIVDQ 541

Query: 562 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
           V+LTTN +GL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+  EGI PD+I
Sbjct: 542 VMLTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDMPFNREGIVPDLI 601

Query: 622 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
           +NPHAIPSRMTIG ++EC++ KV+   G EGDATPFT+VTV+ IS AL + GYQ RGFE 
Sbjct: 602 INPHAIPSRMTIGHMVECLLSKVSTLSGNEGDATPFTEVTVEAISHALQEHGYQKRGFEV 661

Query: 682 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           ++NGHTGR+LTA I+ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 662 LFNGHTGRKLTAQIYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 720


>gi|45545315|gb|AAS67505.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Cenococcum geophilum]
          Length = 935

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/781 (61%), Positives = 596/781 (76%), Gaps = 41/781 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  +T+KA++ GY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 155 FLPHISQKEGQDTRKAFFLGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 214

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLTRDV  Y+QKCV+N ++ ++Q A+KA  IT+GLKYSLATGNWG Q  AA ++AGV
Sbjct: 215 LFIKLTRDVYKYLQKCVENNQEFSIQMAVKASLITNGLKYSLATGNWGDQKKAASSKAGV 274

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 275 SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 334

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VGS + PI +F+ +   E  EE  P V P ATK+FVNG WVG+H  P  LV  
Sbjct: 335 SLMCYVSVGSESTPITDFMSQRNMELLEEYDPVVNPSATKVFVNGVWVGVHSQPSQLVTV 394

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
           ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF++E          L++ K  I
Sbjct: 395 VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVIENNPTKTNRGSLVLNKTHI 454

Query: 293 IALQQRE-------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
             L + +       + ED      GW  L+  G +EY+D EEEET MI MT  DL     
Sbjct: 455 EKLHEDKEIDVSGLNDEDAEKAKFGWKGLLHSGVVEYLDAEEEETAMIIMTPEDLEDHHR 514

Query: 336 VQA-------------RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
           V A             R+ P+      T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 515 VSAGTMIYDDGGDPHKRIKPKPNPTVKTFTHCEIHPSMILGICASIIPFPDHNQSPRNTY 574

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIAC
Sbjct: 575 QSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIAC 634

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRSLF+RSY ++EK++G  V E F +P RS+T+ M+ G+
Sbjct: 635 YSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTEQEKRIGVNVLEQFEKPTRSDTLRMKGGT 694

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMV 559
           YDKLDDDG+  PG RVSG+D+IIGKT PI  D  + GQ +  +T+RD S  LR +E G+V
Sbjct: 695 YDKLDDDGVVAPGVRVSGDDIIIGKTAPIPPDAKELGQKTIMHTKRDVSTPLRSTENGIV 754

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD
Sbjct: 755 DQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGLTPD 814

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMTI  LIEC++ KV +  G EGDATPFTDVTV+++SK L + GYQ RGF
Sbjct: 815 LIINPHAIPSRMTIAHLIECLLSKVGSLRGCEGDATPFTDVTVESVSKLLREHGYQSRGF 874

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
           E MYNGHTG+++ A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGGLR
Sbjct: 875 EVMYNGHTGKKMVAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLR 934

Query: 740 F 740
           F
Sbjct: 935 F 935


>gi|120561243|gb|ABM27006.1| RNA polymerase II second largest subunit, partial [Zancudomyces
           culisetae]
 gi|363543580|gb|AEW26268.1| RPB2 [Zancudomyces culisetae]
          Length = 899

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/761 (62%), Positives = 589/761 (77%), Gaps = 21/761 (2%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPHVGT    ET+K Y+ GY++HRLL C L RR +DDRDHYG KRLDLAGPLL  LFR 
Sbjct: 139 FLPHVGTQPHNETRKTYFLGYMVHRLLQCVLERRDQDDRDHYGRKRLDLAGPLLAMLFRN 198

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+K+TRD+  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  A  +R GV
Sbjct: 199 LFKKMTRDMTRYLQKCIESRREFNLSMALKSNTITAGLKYSLATGNWGDQKKAMQSRTGV 258

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           +QVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 259 AQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 318

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM +ITVGS +  IL FLEEW  EN EE+    +  +TKIFVNG WVGIH++   L  T
Sbjct: 319 ALMAHITVGSDSGSILMFLEEWAMENLEELVGDSLADSTKIFVNGVWVGIHKEAVRLAAT 378

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           L++LRRR++ + E+ +V D+R +E+RI TD GR  RPLF+V   RL + K  + A++ R 
Sbjct: 379 LKQLRRRLEFSYELSIVHDVREREIRILTDAGRVCRPLFVVNHMRLALTKPVVAAIEARR 438

Query: 300 SPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------LHPEE------ 344
             E     WHDL+++G +EY+D EEEET MI M+ ++L ++R       L P++      
Sbjct: 439 LGERDAVRWHDLLSEGIVEYLDAEEEETAMIVMSPHELDESRRFVHTGQLPPKDDGRIRS 498

Query: 345 ---AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 401
                  T+THCEIHPS+ILG+CASI+PFPDHNQSPRNTYQSAMGKQAMGI +TNYQ RM
Sbjct: 499 RRNIGITTWTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAMGKQAMGILLTNYQVRM 558

Query: 402 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 461
           DTLA +LYYPQKPL TT AME++ F +LPAG NAIVAI CY+GYNQEDS+IMNQSSIDRG
Sbjct: 559 DTLANLLYYPQKPLATTHAMEYIKFSELPAGQNAIVAILCYTGYNQEDSLIMNQSSIDRG 618

Query: 462 FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 521
            FRS+FFRSY DEE K+G      F +P R++T+ ++ G+Y+KLDDDGL  PGTRV+G+D
Sbjct: 619 LFRSIFFRSYMDEEDKLGMRTMGRFEKPSRASTLRLKIGTYEKLDDDGLIAPGTRVTGDD 678

Query: 522 VIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 579
           +IIGKTTPI  +  E   +   +T+ D S  LR +E+G+VDQVLLTTN DG +FVKVRVR
Sbjct: 679 IIIGKTTPIPIASLELGQRTLAHTKLDASKPLRATESGIVDQVLLTTNGDGFKFVKVRVR 738

Query: 580 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 639
           S R+PQIGDKF+SRHGQKGT+G+ YT EDMP+T +GI PD+I+NPHAIPSRMTIG LIEC
Sbjct: 739 STRVPQIGDKFASRHGQKGTIGIVYTSEDMPFTADGIVPDLIINPHAIPSRMTIGHLIEC 798

Query: 640 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 699
           ++ K+A  +G   DA+PFTDVTVD IS  L   GY  RG E MYNGH+GR+L + +F GP
Sbjct: 799 LLSKLATLVGTAADASPFTDVTVDAISAELFSLGYHSRGLEVMYNGHSGRKLYSQVFFGP 858

Query: 700 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           TYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDGGLRF
Sbjct: 859 TYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 899


>gi|45545345|gb|AAS67520.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Pneumocystis carinii]
          Length = 898

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/745 (64%), Positives = 592/745 (79%), Gaps = 36/745 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+ T +  ET+KA++ GY+IHRLLLCAL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 155 LLPHITTTEGYETRKAFFLGYMIHRLLLCALERRDPDDRDHFGKKRLDLAGPLLANLFRM 214

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+DV  Y+QKCV+  ++ NL  A+K+ TIT GL+YSLATGNWG Q      R GV
Sbjct: 215 LFKKLTKDVYKYMQKCVETNREFNLTLAVKSNTITHGLRYSLATGNWGDQKKIMSARVGV 274

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 275 SQVLNRYTFASTLSHLRRTNTPIGRDGKVAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 334

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VGSA+ PI+EFLEEWG EN E+ +P+  P  TK+FVNG W+G+HRDP  LV+T
Sbjct: 335 SLMSYVSVGSASAPIIEFLEEWGMENLEDYNPSATPNTTKVFVNGVWLGVHRDPYHLVET 394

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKK--- 289
           ++ LRR++D++ EV VVRDIR KELRI+TD GR  RPLFIV+         +L++KK   
Sbjct: 395 IKSLRRKLDISVEVSVVRDIREKELRIFTDAGRVCRPLFIVDNNPESNSRGQLMLKKEHV 454

Query: 290 RDIIALQQR---ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQA--- 338
           + II  + R   ++    GW  LVA G +EYID EEEET MI+MT  DL     +QA   
Sbjct: 455 QKIIDNKNRTELDNESKFGWSSLVANGIVEYIDAEEEETVMIAMTPEDLEATRQIQAGYK 514

Query: 339 ---------RLHPEEAYADTY--THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
                    R+ P  +  +TY  THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 515 IADEIDPARRVKPLVS-PNTYLWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGK 573

Query: 388 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 447
           QA+G+++TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQ
Sbjct: 574 QAIGVFLTNYQVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQ 633

Query: 448 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 507
           EDSVIMNQSSIDRG FRS+F+RSY D+EKK+G  + E+F +P R+N + ++HG+YDK++D
Sbjct: 634 EDSVIMNQSSIDRGLFRSIFYRSYMDQEKKIGMQIMEEFEKPMRNNCLKLKHGTYDKIED 693

Query: 508 DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLT 565
           DGL  PGTRVSG+D+IIGKT PI  + E  GQ +++ T+RD S  LR +E+G++DQV+++
Sbjct: 694 DGLIAPGTRVSGDDIIIGKTAPIPPNAEELGQRTKFHTKRDVSTPLRSTESGIIDQVMVS 753

Query: 566 TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 625
           TNA+GL+FVKVR+RS RIPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PDII+NPH
Sbjct: 754 TNAEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGITYRHEDMPFTSEGIVPDIIINPH 813

Query: 626 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 685
           AIPSRMT+  LIEC++ KV+A  G EGDATPFTDVTV+ ISK L + GYQ RGFE MYNG
Sbjct: 814 AIPSRMTVAHLIECLLSKVSALSGYEGDATPFTDVTVEAISKMLRQHGYQSRGFEVMYNG 873

Query: 686 HTGRRLTAMIFLGPTYYQRLKHMVD 710
           HTGR+L A +FLGPTYYQRLKHMVD
Sbjct: 874 HTGRKLVAQVFLGPTYYQRLKHMVD 898


>gi|6606101|gb|AAF19063.1|AF107791_1 DNA-dependent RNA polymerase II RPB140 [Chaetomium elatum]
          Length = 934

 Score = 1009 bits (2609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/777 (61%), Positives = 597/777 (76%), Gaps = 37/777 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   + CET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 158 MLPHISQTEGCETRKAFFLGYMVHRLLQCALGRRDPDDRDHFGKKRLDLAGPLLAKLFRN 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           + R++T+D+ +Y+++C+D  K+ +L   IK  T+T+GLKYSLATGNWG Q  AA + AGV
Sbjct: 218 VIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNGLKYSLATGNWGDQKKAASSTAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPA+TPEGQACGLVKNL
Sbjct: 278 SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPADTPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VG+ A PI+EF+   G E  EE  P   P ATK+FVNG WVG+H+DP+ LV  
Sbjct: 338 SLMCYVSVGTPADPIVEFMIARGMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTL 397

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKK 289
           ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF VE++           L++ K
Sbjct: 398 VQGLRRKNVISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEPNGESGAEKGALILNK 457

Query: 290 RDIIALQ-----QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
             I  L+      +  P+  GW  L+  G IEY+D EEEET MI MT  DL Q R   + 
Sbjct: 458 EHIGKLKLDTEYGKYHPDYWGWQGLLKSGAIEYLDAEEEETVMICMTPQDLDQFRARKQG 517

Query: 345 AYAD-------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
            +                      YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAM
Sbjct: 518 RFEQDNSGLGNNRIKTKPNPITHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAM 577

Query: 386 GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
           GKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGY
Sbjct: 578 GKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGY 637

Query: 446 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
           NQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P+RS+T+ ++H +YDKL
Sbjct: 638 NQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPNRSDTLRLKHSTYDKL 697

Query: 506 DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVL 563
           D DG+  PG RVSGED+IIGKT PI+ D A+ GQ S ++ +RD S  LR +E+G++DQV+
Sbjct: 698 DADGIVAPGIRVSGEDIIIGKTCPINPDNAELGQRSNQHVKRDASTPLRSTESGIIDQVV 757

Query: 564 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
           +TTN DG+R+VKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+N
Sbjct: 758 VTTNQDGMRYVKVRVRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIIN 817

Query: 624 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
           PHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S  L + GYQ RGFE MY
Sbjct: 818 PHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVTVDSVSDLLREHGYQSRGFEIMY 877

Query: 684 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           +GHTGR+L + +F GPTYYQRL+HMVDDKIH+R RGP+QI+TRQP EGR+RDGGLRF
Sbjct: 878 HGHTGRKLRSQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRF 934


>gi|120561257|gb|ABM27013.1| RNA polymerase II second largest subunit, partial [Gigaspora
           gigantea]
          Length = 894

 Score = 1009 bits (2609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/747 (65%), Positives = 580/747 (77%), Gaps = 39/747 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPHV T   CE +KA++ GY++HRLLL ALGRR  DDRDHYG KR+DLAGPLL  LFRM
Sbjct: 148 LLPHVSTEYGCEKRKAFFLGYMVHRLLLAALGRRELDDRDHYGKKRMDLAGPLLASLFRM 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y++KC+D  ++ NL  AIKA+TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 208 LFKKLTKDISIYLRKCIDTSREFNLHLAIKAQTITNGLKYSLATGNWGDQKKAMQSRAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTFASTLSHLRRCNTPMGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENF-EEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
           +LM YI+VGS++ PI++FLEE+G  N  ++  PA I   TK+FVNG W GI   PE L  
Sbjct: 328 SLMSYISVGSSSKPIVDFLEEYGMINLNQQFDPANIRDNTKVFVNGKWAGISTAPEQLAN 387

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL--- 295
           TLR LRR VDV+ EV VVRDIR KELRIYTD GR  RPLFIVE Q L+I K  I  L   
Sbjct: 388 TLRGLRRSVDVSPEVSVVRDIREKELRIYTDAGRVCRPLFIVEDQCLVISKELIDNLDDI 447

Query: 296 ----------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL---------- 335
                     ++R+  +   WHDL++ G IEYID EEEET MI MT  DL          
Sbjct: 448 HGENAEKQSQKRRQDRQVYVWHDLISNGAIEYIDAEEEETVMICMTPEDLAASRNYYQTG 507

Query: 336 -----------VQARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                      + AR+  E   +  T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQS
Sbjct: 508 ISQASKAHEKDIAARVKSESNLSIHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 567

Query: 384 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
           AMGKQAMGIYVTNYQ RMDTLA +LYYPQKPLVTTRAME L FR+LPAG NAIVAI CYS
Sbjct: 568 AMGKQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRFRELPAGQNAIVAILCYS 627

Query: 444 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
           GYNQEDSVIMNQSSIDRG FRS+F+RSY D+EKK+G L  E+F +P R  T+ ++HG+Y+
Sbjct: 628 GYNQEDSVIMNQSSIDRGLFRSIFYRSYMDQEKKVGILSIEEFDKPTRETTLRLKHGTYE 687

Query: 504 KLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQ 561
           KL+DDGL  PGTRVSG+D+IIGK TPI +   E   +   +T RD S  +R +E G+VDQ
Sbjct: 688 KLEDDGLIAPGTRVSGDDIIIGKVTPIPEHTIELGQRKDSHTHRDASTPMRSTENGIVDQ 747

Query: 562 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
           V++TTNA+G++FVKVRVRS RIPQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+I
Sbjct: 748 VMVTTNAEGMKFVKVRVRSTRIPQMGDKFASRHGQKGTIGITYRQEDMPFTSEGITPDLI 807

Query: 622 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
           +NPHAIPSRMTIG L+EC++GKV+   G+EGDATPFTDVTV+ IS +L + GY  RGFE 
Sbjct: 808 INPHAIPSRMTIGHLVECLLGKVSTLTGQEGDATPFTDVTVEAISHSLRQNGYHSRGFEV 867

Query: 682 MYNGHTGRRLTAMIFLGPTYYQRLKHM 708
           MYNGHTGR+L A +FLGPTYYQRLKHM
Sbjct: 868 MYNGHTGRKLAAQVFLGPTYYQRLKHM 894


>gi|83415497|gb|ABC17956.1| RNA polymerase II second largest subunit, partial [Rozella
           allomycis]
          Length = 697

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/699 (67%), Positives = 575/699 (82%), Gaps = 6/699 (0%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+DLAGPLL GLFRMLFRKLT+DV  Y+QKC+D+ +D NL  A+K+ TIT+GL+YS+AT
Sbjct: 2   KRMDLAGPLLAGLFRMLFRKLTKDVGKYLQKCIDSNRDFNLTLAVKSNTITNGLRYSIAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A  +RAGVSQVLNR TYASTLSHLRR+N+PIGR+GKLAKPRQLHNS WGM+C
Sbjct: 62  GNWGDQKKAMESRAGVSQVLNRYTYASTLSHLRRVNTPIGRDGKLAKPRQLHNSHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM YI+VG++  PI++ L+ +  E   EISP+ I   TKIF+N
Sbjct: 122 PAETPEGQACGLVKNLSLMSYISVGTSPAPIIDALKIYQMEYLAEISPSSIGNLTKIFMN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+H DP+ LV  L++ RR   ++ E  VV D+R KE+RI TD GRC RPLF+VE Q
Sbjct: 182 GNWIGVHSDPKRLVNDLKKFRRECAISFETSVVFDVREKEVRILTDAGRCCRPLFVVENQ 241

Query: 284 RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 343
            + +K+  +  LQQR+     GW +L+  G +EY+D EEEET+MI MT  DL++A+   +
Sbjct: 242 TIQLKEDQLSQLQQRDI-TGFGWQNLLENGVVEYLDVEEEETSMICMTPEDLLEAKNITD 300

Query: 344 EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 403
             +   YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI  TN+Q RMDT
Sbjct: 301 --FPTKYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGINSTNFQRRMDT 358

Query: 404 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 463
           L  +L+YPQKPLVTTR+ME+LHFR+LPAG NAIVAIACYSGYNQEDSVIMNQS+IDRG F
Sbjct: 359 LNNILFYPQKPLVTTRSMEYLHFRELPAGQNAIVAIACYSGYNQEDSVIMNQSAIDRGLF 418

Query: 464 RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 523
           RS+ +++Y DEEKK+GTL  E+F +P  + T+ MRHG+YDKL+DDGL  PG ++SGED+I
Sbjct: 419 RSICYKTYTDEEKKVGTLQVEEFMKPTFTTTVRMRHGTYDKLEDDGLVAPGIKISGEDII 478

Query: 524 IGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 581
           IGKT PI    DE   + S +TRRD S  L+ +E G++DQV+++TNADG RFVK+RV SV
Sbjct: 479 IGKTVPIPDDSDELGQRTSTHTRRDASTPLKSNEHGIIDQVMISTNADGYRFVKIRVSSV 538

Query: 582 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 641
           R+PQ+GDKF+SRHGQKGTVG+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++
Sbjct: 539 RVPQMGDKFASRHGQKGTVGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLL 598

Query: 642 GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 701
           GKV+A  G EGDATPFTDVTV++IS+ L KCGYQ RGFE +YNGH+GR+L A IF+GPTY
Sbjct: 599 GKVSAITGDEGDATPFTDVTVESISETLLKCGYQSRGFEVLYNGHSGRKLNAQIFIGPTY 658

Query: 702 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           YQRLKHMVDDKIH+R RGPVQILTRQP EGRSRDGGLRF
Sbjct: 659 YQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRF 697


>gi|401884833|gb|EJT48974.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
            asahii CBS 2479]
          Length = 1732

 Score = 1008 bits (2607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/777 (62%), Positives = 601/777 (77%), Gaps = 41/777 (5%)

Query: 13   TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 72
            ++KA++ GY+IHRL   ALGRR  DDRDH+G KRLDLAGPLL  LFR+LF+KLTRDV  +
Sbjct: 359  SRKAFFLGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYRH 418

Query: 73   VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 131
            +QKCV+  K+  L  AIK   IT+GLKYSLATGNWG QA A   RAGVSQVLNR T+AST
Sbjct: 419  LQKCVETHKEFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQARAGVSQVLNRYTFAST 478

Query: 132  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 191
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI+VGS +
Sbjct: 479  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLVKNLALMSYISVGSYS 538

Query: 192  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 251
             P++EFLEEWG E  +E   A  P ATK+FVNG W+GIHRD   L + L  +RR   +  
Sbjct: 539  APVMEFLEEWGLEPQDEYGSA--PNATKVFVNGVWMGIHRDAVKLHENLLEMRRGGQLKH 596

Query: 252  EVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQ-----RESPEDG 304
            EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L +K+  I  L+       E+ +  
Sbjct: 597  EVSIVRDIRERELRLYTDAGRVCRPLFIVDRPTQTLRLKREHIDRLENIADGLEEAVDGS 656

Query: 305  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--PEE------------------ 344
             W +L+ +G IEY+D EEEET +I+MT  DL  AR++  P+E                  
Sbjct: 657  AWDELLYQGVIEYVDAEEEETILIAMTSEDLENARMYESPQEVARAQAAHTLEAFDPTAR 716

Query: 345  ----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
                +++  YTH EIHPS+ILGVCASI+PFPDHNQSPRNTYQSAMGKQAMGI++TNYQ R
Sbjct: 717  VKSSSWSQNYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGIHLTNYQLR 776

Query: 401  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
            MDT+A +LYYPQ PL TT++M++L F  LPAG NAIVAI CYSGYNQEDSVIMNQSSIDR
Sbjct: 777  MDTMANILYYPQSPLATTQSMKYLKFSDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDR 836

Query: 461  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRV 517
            G FRSL++R+Y D EK +G    E F +PDR+ T+ M+HGS   Y KLD+DGL  P T V
Sbjct: 837  GLFRSLYYRAYTDTEKMVGMQKVESFEKPDRNETLRMKHGSSDRYAKLDNDGLITPATNV 896

Query: 518  SGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
            +G+D+IIGKT PI  D E  GQ ++ +T+RD S  ++ +E G+VDQV++TTNADGL+FVK
Sbjct: 897  NGDDIIIGKTAPIPPDSEELGQRSATHTKRDVSTPMKSTEQGVVDQVMITTNADGLKFVK 956

Query: 576  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
            +R+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG 
Sbjct: 957  IRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGH 1016

Query: 636  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
            L+EC++ K+A   G+EGDATPFT++TV+++SK L + GYQ RG E MY+GHTG++L A +
Sbjct: 1017 LVECLLSKLATLTGREGDATPFTELTVESVSKLLRQRGYQSRGLEVMYHGHTGKKLRAQV 1076

Query: 696  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 752
            + GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEMERDC+  HG
Sbjct: 1077 YFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCL--HG 1131



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 66/85 (77%)

Query: 746  DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 805
            +CMI+HG + FLKER+++ SDA+R+HVC+ CGL+A+ANLKK  F C  C+N T I Q++I
Sbjct: 1646 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANLKKQEFHCSVCRNSTQISQIYI 1705

Query: 806  PYACKLLFQELMAMAIAPRMLTKED 830
            PYA KLLFQEL AM +  RM + ED
Sbjct: 1706 PYAAKLLFQELQAMNVTVRMYSDED 1730


>gi|56694314|gb|AAW22897.1| RNA polymerase II second largest subunit [Ceratozamia miqueliana]
          Length = 552

 Score = 1008 bits (2607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/552 (88%), Positives = 507/552 (91%), Gaps = 10/552 (1%)

Query: 168 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 227
           PEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCWV
Sbjct: 1   PEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGCWV 60

Query: 228 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 287
           GIHRDPE+LVKTLR+LRR+VDVNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVE  RLLI
Sbjct: 61  GIHRDPELLVKTLRQLRRQVDVNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVEDXRLLI 120

Query: 288 KKRDIIALQQRESPEDG---------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           KK DI  LQQR+              GWH+LV KGFIEY+DTEEEETTMISMTI+DLV A
Sbjct: 121 KKPDIRRLQQRDQLPPPXPDDENTVRGWHELVTKGFIEYVDTEEEETTMISMTISDLVNA 180

Query: 339 RLHPEEAYADT-YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
           R  P  A +   YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY
Sbjct: 181 RNSPPTATSIVKYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 240

Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
           Q RMDTLAYVLYY  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS
Sbjct: 241 QLRMDTLAYVLYYXXKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 300

Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
            DRGFFRSLF+RSYRDEEK+MGTLVKE+FGRP+R NT GMRHGSY KLDDDGLAPPGTRV
Sbjct: 301 XDRGFFRSLFYRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYXKLDDDGLAPPGTRV 360

Query: 518 SGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 577
           SGEDVIIGKTTP++QDE+ GQA+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR
Sbjct: 361 SGEDVIIGKTTPVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVR 420

Query: 578 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 637
           +RSVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWTVEGITPDIIVNPHAIP RMTIGQLI
Sbjct: 421 MRSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPXRMTIGQLI 480

Query: 638 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 697
           ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFL
Sbjct: 481 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFL 540

Query: 698 GPTYYQRLKHMV 709
           GPTYYQRLKHMV
Sbjct: 541 GPTYYQRLKHMV 552


>gi|56694310|gb|AAW22895.1| RNA polymerase II second largest subunit [Polystichum lonchitis]
          Length = 527

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/528 (90%), Positives = 500/528 (94%), Gaps = 1/528 (0%)

Query: 168 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 227
           PEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWV
Sbjct: 1   PEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWV 60

Query: 228 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 287
           GIHRDPE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLI
Sbjct: 61  GIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLI 120

Query: 288 KKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYA 347
           KK DI ALQQ+ES E G W+DLV KGFIEY+DTEEEETTMISMTI DLV ARLHPEEAY+
Sbjct: 121 KKSDIRALQQKESAEPG-WYDLVTKGFIEYVDTEEEETTMISMTIQDLVNARLHPEEAYS 179

Query: 348 DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 407
           DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYV
Sbjct: 180 DTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYV 239

Query: 408 LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 467
           LYYPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSIDRGFFRS+F
Sbjct: 240 LYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIF 299

Query: 468 FRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 527
           +RSYRDEEKK GTLVKE+F RP R NT GMRHGSY KLDDDGLAPPGTRVSGEDVIIGKT
Sbjct: 300 YRSYRDEEKKQGTLVKEEFERPIRENTQGMRHGSYGKLDDDGLAPPGTRVSGEDVIIGKT 359

Query: 528 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 587
           TPI+QD+   QA RY++RD S  LRHSE+GMVDQVLLTTNADGLRFVK+RVRS+RIPQIG
Sbjct: 360 TPIAQDDTGTQAQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIG 419

Query: 588 DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 647
           DKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH
Sbjct: 420 DKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 479

Query: 648 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY GHTGRRL AMI
Sbjct: 480 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYXGHTGRRLNAMI 527


>gi|160331027|ref|XP_001712221.1| rpb2 [Hemiselmis andersenii]
 gi|159765668|gb|ABW97896.1| rpb2 [Hemiselmis andersenii]
          Length = 1222

 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/846 (57%), Positives = 617/846 (72%), Gaps = 28/846 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHVG G   E +K ++FGYII++L+   +G+RA DDRDHYG+KRLD+AGPLL  LFR 
Sbjct: 381  FLPHVGIGQGFELRKGFFFGYIINKLMATQIGKRATDDRDHYGHKRLDVAGPLLSVLFRQ 440

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGV 119
            L  K+ +D+R  +Q+  + GK+ N +   IK   +T+G++Y+LATGNWG    A +R GV
Sbjct: 441  LLGKVIKDLRTSLQRKSNLGKNFNQISDFIKPSFLTTGIQYALATGNWGTDKQA-SRTGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRL+++STLSHLRRLNSP G++G L KPRQLHNS WG++CPAETPEG +CGLV+NL
Sbjct: 500  SQVLNRLSFSSTLSHLRRLNSPSGKDGNLTKPRQLHNSHWGLICPAETPEGHSCGLVRNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            AL  ++T+GS+  PI+EFLEE+  EN  ++    +  + KIFVNGCW+GIH  P  LVK 
Sbjct: 560  ALSAFVTIGSSTLPIMEFLEEFKIENLSDVKLEKLKFSYKIFVNGCWIGIHDKPLNLVKN 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL-------------- 285
            LR+ RR   +  E+ +  DI+ KE+RI TD GR  RPL IV  ++L              
Sbjct: 620  LRKGRRLGFLREEISISFDIKEKEIRISTDSGRICRPL-IVLNEKLSKNTNGTEIKTFLP 678

Query: 286  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
            L+KK  +  ++   S     +HDL+ +G +E+ID EEEE  +ISM + +  Q +     +
Sbjct: 679  LLKKSHLSKIKNDPS---FSFHDLLKEGIVEFIDAEEEEICLISMFLKETFQKKFR---S 732

Query: 346  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
                YTHCEIHPSLILGVC S IPF DHNQSPRNTYQ+AMGKQA+GI   N+QFRMDT+A
Sbjct: 733  LNIEYTHCEIHPSLILGVCGSFIPFSDHNQSPRNTYQAAMGKQAIGINSLNFQFRMDTMA 792

Query: 406  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
            ++LYYPQ PLV TRAM+ ++++  P GIN+IVAIACY GYNQEDS+IM+Q +IDRG FRS
Sbjct: 793  HILYYPQTPLVVTRAMKFMNYKNFPNGINSIVAIACYGGYNQEDSIIMSQDAIDRGLFRS 852

Query: 466  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
            +F+R YRDEEK     +KE F  P   + +G + GSY KLD DGL   GTRVSG+D+IIG
Sbjct: 853  VFYRCYRDEEKTKFGGLKEIFEIPKFEDCIGCKTGSYQKLDLDGLVSEGTRVSGDDIIIG 912

Query: 526  KTTP-----ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 580
            KT P     I    A  + +   ++D S + R  E+G+VD+V++ T+  G + VK+R+RS
Sbjct: 913  KTVPYDFSKIKSSLAPLEKTLKFKKDASTAARSFESGVVDKVMIGTSDLGTKLVKIRIRS 972

Query: 581  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 640
            VRIPQIGDKF+SRHGQKG VGM Y Q D+P+T +GI PDII+NPHAIPSRMTIG L+E +
Sbjct: 973  VRIPQIGDKFASRHGQKGIVGMLYKQVDLPFTKDGIIPDIIMNPHAIPSRMTIGHLLEGL 1032

Query: 641  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
            + KV+A  G EGD +PF ++TV+ ISK L    ++  G+E M NG TG  L AMIF+GPT
Sbjct: 1033 LSKVSALGGMEGDGSPFCNITVEKISKKLESLNFEKNGWEIMRNGETGNNLNAMIFIGPT 1092

Query: 701  YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 760
            YYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCM++HGAS FLK+R
Sbjct: 1093 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMMSHGASIFLKDR 1152

Query: 761  LFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 820
            L DQSDA+ + +C+ CGLIAIAN KK  FECR C N+  I  V IPYACKLLFQELMAMA
Sbjct: 1153 LMDQSDAFSIFLCDLCGLIAIANPKKRIFECRSCLNRNSISLVKIPYACKLLFQELMAMA 1212

Query: 821  IAPRML 826
            IAPRM+
Sbjct: 1213 IAPRMI 1218


>gi|45330861|gb|AAS57791.1| RNA polymerase II second largest subunit [Cortinarius iodes]
          Length = 878

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/737 (66%), Positives = 584/737 (79%), Gaps = 25/737 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E +KA++FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 143 MLPHVAMKEGSEYQKAHFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLSNLFRM 202

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 203 LFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 262

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 263 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 322

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS A P +EFLEEWG E+ EE S +  P +TKIFVNG W+G+HRDP  LVKT
Sbjct: 323 ALMACISVGSIAAPGIEFLEEWGLESLEEHSHSPAP-STKIFVNGVWIGVHRDPANLVKT 381

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
           L++LRR+ D++ E+ +VRDIR KELR+Y+D GR  RPLFIVE QRL+++KR +  L    
Sbjct: 382 LKKLRRKDDISPEISIVRDIREKELRVYSDAGRVCRPLFIVENQRLILQKRHVRWLNNGI 441

Query: 298 RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-----PEE-------- 344
            +  E+  W  L+  G IE +D EEEET MISMT  DL  +RL      P+         
Sbjct: 442 NDEGEEFKWDRLIKGGIIELLDAEEEETVMISMTPEDLENSRLQRPGVDPQANEGEFDPA 501

Query: 345 ------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                  +A T THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+ 
Sbjct: 502 ARLKAGTHAHTLTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 561

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 562 IRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 621

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRS+++RSY D EKK G    E+F +P R NT+ ++HG+YDKL+DDGL  PGT V+
Sbjct: 622 DRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRLKHGTYDKLEDDGLIAPGTGVA 681

Query: 519 GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +FVKV
Sbjct: 682 GEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKV 741

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           RVRS RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGI PD+I+NPHAIPSRMTIG L
Sbjct: 742 RVRSSRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDVIINPHAIPSRMTIGHL 801

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
           +EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A ++
Sbjct: 802 VECLLSKVATLIGNEGDATPFTDLTVESVSIFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 861

Query: 697 LGPTYYQRLKHMVDDKI 713
           LGPTYYQRLKHMVDDKI
Sbjct: 862 LGPTYYQRLKHMVDDKI 878


>gi|56694358|gb|AAW22919.1| RNA polymerase II second largest subunit [Metasequoia
           glyptostroboides]
          Length = 533

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/536 (88%), Positives = 508/536 (94%), Gaps = 3/536 (0%)

Query: 179 LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
           LALMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+
Sbjct: 1   LALMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVR 60

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
           TLR+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+V+ QRL I+K DI  LQ  
Sbjct: 61  TLRQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVDNQRLKIRKVDINNLQA- 119

Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
            S EDG WH+LV +G IEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPS
Sbjct: 120 -SREDG-WHELVTQGCIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPS 177

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTT
Sbjct: 178 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTT 237

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           RAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+ 
Sbjct: 238 RAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRA 297

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 538
           GTLVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++ GQ
Sbjct: 298 GTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSAGQ 357

Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
            S+YT+RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKG
Sbjct: 358 VSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKG 417

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT
Sbjct: 418 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 477

Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           DVTVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 478 DVTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIH 533


>gi|56694340|gb|AAW22910.1| RNA polymerase II second largest subunit [Saxegothaea conspicua]
          Length = 526

 Score = 1006 bits (2601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/529 (89%), Positives = 504/529 (95%), Gaps = 3/529 (0%)

Query: 186 TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR 245
           TVGS+  PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LV+TLR+LRR
Sbjct: 1   TVGSSPNPILEFLEEWSTENFEEISPAVIPTATKIFVNGCWVGIHRDPELLVRTLRQLRR 60

Query: 246 RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG 305
           +VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+V+KQRL+IKKRDI  L Q  +PEDG 
Sbjct: 61  QVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVKKQRLIIKKRDINELWQ--NPEDG- 117

Query: 306 WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCA 365
           WHDL+ KGFIEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLILGVCA
Sbjct: 118 WHDLITKGFIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLILGVCA 177

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMD LAYVLYYPQKPLVTTRAMEHLH
Sbjct: 178 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDXLAYVLYYPQKPLVTTRAMEHLH 237

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+
Sbjct: 238 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEE 297

Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRR 545
           FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQ+E+  Q S+YTRR
Sbjct: 298 FGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVSQEESGNQISKYTRR 357

Query: 546 DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 605
           D S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYT
Sbjct: 358 DQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYT 417

Query: 606 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 665
           QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+I
Sbjct: 418 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSI 477

Query: 666 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           SKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 478 SKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIH 526


>gi|6606109|gb|AAF19067.1|AF107795_1 DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum]
          Length = 1109

 Score = 1006 bits (2601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/781 (61%), Positives = 598/781 (76%), Gaps = 41/781 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 329  FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRYVDDRDHFGKKRLDLAGPLLANLFRV 388

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 389  LFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 448

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 449  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 508

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            ALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WVG+HRDP  LV T
Sbjct: 509  ALMCCITVGTPSEPIIDFMIQRNREVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLVGT 568

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+          L++ K  I
Sbjct: 569  VQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVKEHI 628

Query: 293  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
              L+  +E P D           GW  LV  G IEY+D EEEET MI MT  DL  ++ +
Sbjct: 629  HKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPEDLEASKQY 688

Query: 342  ------PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 689  QAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 748

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+LPAG N IVAIAC
Sbjct: 749  QSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGRNVIVAIAC 808

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 809  YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGT 868

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
            YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D S  LR +E+G+V
Sbjct: 869  YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIV 928

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+TPD
Sbjct: 929  DQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPD 988

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S  L + GYQ RGF
Sbjct: 989  LIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGF 1048

Query: 680  ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
            E MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1049 EVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1108

Query: 740  F 740
            F
Sbjct: 1109 F 1109


>gi|399949761|gb|AFP65418.1| DNA-directed RNA polymerase II second largest subunit [Chroomonas
            mesostigmatica CCMP1168]
          Length = 1222

 Score = 1006 bits (2600), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/846 (56%), Positives = 623/846 (73%), Gaps = 26/846 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+G G   E +K ++ GYII++L+   +G+R  DDRDHYG+KRLD+AG LL  LFR 
Sbjct: 381  FLPHIGIGQGFELRKGFFLGYIINKLMNTQIGKRKTDDRDHYGHKRLDVAGSLLSILFRQ 440

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQF-AIKAKTITSGLKYSLATGNWGQANAAGTRAGV 119
            L  K+ +D+R  +QK V   K+    F  +K++ IT+G++++LATGNWG  +   +R GV
Sbjct: 441  LLGKVIKDLRVSLQKKVSLHKNFQPIFDFLKSRLITTGIQFALATGNWG-IDKQVSRTGV 499

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRLT++S LSHLRRLNSP GR+GKL KPRQLHN+ WG++CPAETPEG ACGLV+NL
Sbjct: 500  SQVLNRLTFSSALSHLRRLNSPGGRDGKLTKPRQLHNTHWGLICPAETPEGHACGLVRNL 559

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            A+  ++T+GS + PILE LEE   +N  +I    + Q+ KIFVNGCW+GIH +P +L+  
Sbjct: 560  AMTAFVTIGSPSDPILELLEESKIKNLSKIGFGKVRQSFKIFVNGCWIGIHYNPLLLINL 619

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------------LL 286
            +R+ RR   +  E+    D   KE+RI+TD GR SRPL +V+K                L
Sbjct: 620  IRKARRSGKIREEISFSIDNLEKEIRIFTDSGRISRPLLVVKKNNQYNRQNLGEKFFSFL 679

Query: 287  IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 346
            ++KR I   ++ +  ++  + DL+ +G +EYID EEEE  +I+M+I+++++  L   E  
Sbjct: 680  LEKRHI---EKLKGDKNYLFSDLIKEGIVEYIDAEEEEMCLIAMSIDEVIEQNLKTTET- 735

Query: 347  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
               +TH EIHPS+ILGVC S IPFPDHNQSPRNTYQSAMGKQA+GIY  N+QFRMDT+A+
Sbjct: 736  --DFTHSEIHPSMILGVCGSFIPFPDHNQSPRNTYQSAMGKQAIGIYSMNFQFRMDTMAH 793

Query: 407  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
            +LYYPQKPLV TRAM+ L+++  P GINAIVAIACY GYNQEDS+IM+Q +IDRG FRS+
Sbjct: 794  ILYYPQKPLVVTRAMDFLNYKDFPNGINAIVAIACYGGYNQEDSIIMSQDAIDRGLFRSV 853

Query: 467  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
            F+RSY+DEEK      KE F  P   + +G + GSY KLD DGL   GT+VSG+D+IIGK
Sbjct: 854  FYRSYKDEEKIKFGGQKEVFETPKIKDCVGFKSGSYTKLDLDGLISEGTKVSGDDIIIGK 913

Query: 527  TTPISQDEAQGQASRYTR-----RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 581
            T P +  EA+   +   R     +D S S+R  E+G+VD+VL+ T   G + VK+R+RSV
Sbjct: 914  TVPFNFFEAEYNLNSSERVYKFKKDSSTSVRSFESGIVDKVLIGTTDIGTKLVKIRIRSV 973

Query: 582  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 641
            RIPQIGDKF+SRHGQKG VGM Y Q D+P+T +GI P+II+NPHAIPSRMTIG L+EC++
Sbjct: 974  RIPQIGDKFASRHGQKGIVGMLYKQVDLPFTPDGIIPEIIMNPHAIPSRMTIGHLLECLL 1033

Query: 642  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 701
             KVAA  G EGD +PF+ ++V+ I++ L K  Y+  G+E + NG TG  L A IF+GPTY
Sbjct: 1034 SKVAALGGFEGDGSPFSKISVEKITEQLEKFNYEKFGWENLANGATGELLEAKIFIGPTY 1093

Query: 702  YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERL 761
            YQRLKHMVDDKIHSR RGPVQILTRQP EGR+RDGGLRFGEMERDCMI+HGA+ FLK+RL
Sbjct: 1094 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGAAVFLKDRL 1153

Query: 762  FDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 821
             DQSDA+ V VC+ CG IAI+N K+N +EC+ CK +  I Q+ IPYACKLLFQELM+MAI
Sbjct: 1154 LDQSDAFTVFVCDFCGFIAISNHKQNIYECKSCKPRNSISQIKIPYACKLLFQELMSMAI 1213

Query: 822  APRMLT 827
             PRM+T
Sbjct: 1214 GPRMMT 1219


>gi|45545333|gb|AAS67514.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Melanomma radicans]
          Length = 936

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/782 (61%), Positives = 591/782 (75%), Gaps = 42/782 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  +T+KA++FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 155 FLPHISQREGADTRKAFFFGYMIHRLLQCVLGRREEDDRDHFGKKRLDLAGPLIANLFRI 214

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLT+DV  Y+QKCV+N ++ N+Q A+K   +T+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 215 LFLKLTKDVFKYLQKCVENNQEFNVQMAVKGSVLTNGLKYSLATGNWGDQKKAASAKAGV 274

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 275 SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 334

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VG+ + PI +++ +   E  EE  P V P A K+FVNG WVG H +P  LV  
Sbjct: 335 SLMCYVSVGTESTPITDYMSQRQMELLEEYDPVVNPSAIKVFVNGVWVGTHNNPTQLVNN 394

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
           ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE +       +L++ K  +
Sbjct: 395 VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENRLNQANVGQLVLNKGHV 454

Query: 293 IAL-QQRE------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
             L   RE      S ED      GW  L+  G IEY+D EEEET MI MT  DL     
Sbjct: 455 QKLLDDREIDTSGMSDEDAASVKFGWRGLLHSGVIEYLDAEEEETAMIVMTPEDLEEHRE 514

Query: 336 ----VQARLHPEE-----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
               V A   P+E                YTHCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 515 LQLGVTAPAVPDEDRHRRIKPKPNPSVRFYTHCEIHPSMILGICASIIPFPDHNQSPRNT 574

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIA
Sbjct: 575 YQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIA 634

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ ++ G
Sbjct: 635 CYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLERFEKPTRADTLRLKGG 694

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGM 558
           +YDKLDDDG+  PG RVSG+D+IIGKT PI  D  E   + + +T+RD S  LR +E G+
Sbjct: 695 TYDKLDDDGVVAPGVRVSGDDIIIGKTAPIPTDAKELGQKTTMHTKRDVSTPLRSTENGI 754

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TP
Sbjct: 755 VDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLTP 814

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTI  L+EC++ KV +  G EGDATPFTDVTVD +S  L + GYQ RG
Sbjct: 815 DLIINPHAIPSRMTIAHLVECLLSKVGSLKGNEGDATPFTDVTVDGVSNLLAQHGYQQRG 874

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
           FE MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGGL
Sbjct: 875 FEVMYNGHTGKKLRAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGL 934

Query: 739 RF 740
           RF
Sbjct: 935 RF 936


>gi|6606117|gb|AAF19071.1|AF107799_1 DNA-dependent RNA polymerase II RPB140 [Aureobasidium pullulans]
          Length = 936

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/783 (60%), Positives = 593/783 (75%), Gaps = 45/783 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  ET+KA++ GY+I+R+    LGR  EDDRDH+G KRLDL+GPL+  +FR+
Sbjct: 156 FLPHISQREGSETRKAFFLGYMINRMCQVMLGRCDEDDRDHFGKKRLDLSGPLMAQVFRL 215

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            F +L RD+R Y+ +C++ G+D NL  A+K+  +TSGL+Y LATGNWG Q  AA  +AGV
Sbjct: 216 KFTQLVRDMRVYLSRCIEQGRDFNLTLAVKSNILTSGLRYCLATGNWGDQKKAASAKAGV 275

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 276 SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 335

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VG+ A PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LVK 
Sbjct: 336 SLMCYVSVGTPAEPIVEFMNQRNMELLEEYEPKNNPDATKVFVNGVWVGVHRDPSQLVKV 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK----------------- 282
           ++ LRR   ++ E+ ++RD+R +E +I+TD GR  RPLF+V                   
Sbjct: 396 VQSLRRNGTISFEISLIRDVREREFKIFTDAGRVMRPLFVVNNDPASPTKGQLTLNRSHI 455

Query: 283 -QRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL--- 335
            Q L  ++ D I L + E   DG   GW +L++ G +EY+D EEEE  M+ M+  DL   
Sbjct: 456 SQLLNARETDTIGLSEEE--RDGTIYGWKNLISDGVVEYLDAEEEEVAMMVMSPEDLDEH 513

Query: 336 --VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
             ++A L  EE   D              T+THCEIHP++ILG+CASIIPFPDHNQSPRN
Sbjct: 514 RQMRAGLVYEEPVTDPHRRIKSRPNANVRTWTHCEIHPAMILGICASIIPFPDHNQSPRN 573

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGI +TNY  RMDT+A VLYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 574 TYQSAMGKQAMGITLTNYNVRMDTMANVLYYPQKPLGTTRSMEYLKFRELPAGQNAIVAI 633

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           ACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P R +TM M+H
Sbjct: 634 ACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVEQFEKPTRGDTMRMKH 693

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
           G+YDKLDDDG+  PGTRVSGED+IIGKT P++ D E  GQ +++  +RD S  LR +E+G
Sbjct: 694 GTYDKLDDDGIIAPGTRVSGEDIIIGKTAPMAPDAEELGQRTKFHIKRDVSTPLRSTESG 753

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           ++DQVLLTTN +GL+FVKVR R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T +G+ 
Sbjct: 754 LIDQVLLTTNVEGLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTADGLV 813

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTI  LIEC++ KV +  G+EGDATPFTDVTV  IS  L + G+Q R
Sbjct: 814 PDIIINPHAIPSRMTIAHLIECLLSKVGSLRGQEGDATPFTDVTVTQISDLLRQHGFQQR 873

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
           GFE MYNGHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGG
Sbjct: 874 GFEVMYNGHTGRKMNAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGG 933

Query: 738 LRF 740
           LRF
Sbjct: 934 LRF 936


>gi|45545321|gb|AAS67508.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Cryphonectria parasitica]
          Length = 941

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/787 (61%), Positives = 591/787 (75%), Gaps = 50/787 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   + CET+KAY+ GY+ H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 158 LLPHIAQTEGCETRKAYFLGYMTHKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRN 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           + +KLT D+ AY+++CV  GK  +L   I+  T+T+GLKYSLATGNWG Q  A  + AGV
Sbjct: 218 IVKKLTGDMMAYMKRCVSEGKHFDLALGIRHSTLTNGLKYSLATGNWGEQKKAMSSTAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 278 SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VGS A PI +F+ +   E  EE  P   P ATKIF+NG WVG+H  P  LV  
Sbjct: 338 SLMCYVSVGSPAEPIKDFMVQRNMEVLEEYEPGASPDATKIFINGTWVGVHSQPAHLVTL 397

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE---------KQRLLIKK- 289
           ++ LRRR  ++ EV +VRDIR +E +I++D GR  RPLF+V          ++ L + K 
Sbjct: 398 VQELRRRCIISHEVSLVRDIRDREFKIFSDAGRVMRPLFVVNTPDNENRSRRRDLALTKE 457

Query: 290 -----RDIIALQQRESPED-GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-------- 335
                R +    +++  ED  GW  L   G IEY+D EEEET MI MT  DL        
Sbjct: 458 HAGVLRMMPKYSRKKDDEDYFGWDGLQNSGVIEYLDAEEEETAMICMTPEDLEDFRQRKL 517

Query: 336 --------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
                               V+ R++P+      YTHCEIHP+++LG+CASIIPFPDHNQ
Sbjct: 518 RGKDGKDEEPEDEGRSLNARVKTRINPD---IHMYTHCEIHPAMLLGICASIIPFPDHNQ 574

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NA
Sbjct: 575 SPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNA 634

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  V E F +P RS+T+
Sbjct: 635 IVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDSEKRVGINVVESFEKPFRSDTL 694

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRH 553
            ++HG+YDKLDDDG+  PG RVSGED+IIGKT+PI+ D  + GQ   ++ +RD S  LR 
Sbjct: 695 RLKHGTYDKLDDDGIIAPGVRVSGEDIIIGKTSPINADNQELGQRTEQHVKRDASTPLRS 754

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E+G++D V++TTN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 755 TESGIIDSVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTR 814

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGITPDII+NPHAIPSRMTI  LIEC+M K+A   G EGDATPFT+VTVD+IS+ L + G
Sbjct: 815 EGITPDIIINPHAIPSRMTIAHLIECLMSKLATLKGMEGDATPFTEVTVDSISELLRQHG 874

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 733
           YQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+
Sbjct: 875 YQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRA 934

Query: 734 RDGGLRF 740
           RDGGLRF
Sbjct: 935 RDGGLRF 941


>gi|55583688|gb|AAV53363.1| RNA polymerase II second largest subunit [Grifola frondosa]
          Length = 719

 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/720 (67%), Positives = 576/720 (80%), Gaps = 24/720 (3%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DD DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+
Sbjct: 1   DDSDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P
Sbjct: 121 NTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
             TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  R
Sbjct: 181 -CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCR 239

Query: 276 PLFIVEKQRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTIND 334
           PLFIVE Q+LL++K+ I  L + +  E G  W +L+  G IE +D EEEET MI MT +D
Sbjct: 240 PLFIVENQQLLLQKKHIEKLVKGKDDELGYKWDNLIKDGVIELLDAEEEETVMICMTPDD 299

Query: 335 LVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL       H  E   D            T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 300 LENSRLQASGVDPHANEGEFDPGARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420 IVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRDTTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ 
Sbjct: 480 RMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E+G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540 TESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTDVTV+++S  L + G
Sbjct: 600 EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDVTVESVSAVLRQRG 659

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 733
           YQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRS
Sbjct: 660 YQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 719


>gi|56694294|gb|AAW22887.1| RNA polymerase II second largest subunit [Lycopodium annotinum]
          Length = 533

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/534 (88%), Positives = 500/534 (93%), Gaps = 1/534 (0%)

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALM YITVGSAA PIL  LEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR
Sbjct: 1   ACGLVKNLALMAYITVGSAANPILVXLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHR 60

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           +PE LV TLR+LRR+VDVNTEVGV RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK  
Sbjct: 61  NPEHLVNTLRQLRRQVDVNTEVGVXRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSH 120

Query: 292 IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 351
           I ALQQ+ESPE GGW +LV+KGFIEY+DTEEEETTMISMTI+DLV AR +P EAY+DTYT
Sbjct: 121 IRALQQKESPE-GGWFELVSKGFIEYVDTEEEETTMISMTISDLVNARNNPNEAYSDTYT 179

Query: 352 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 411
           HCEIHPSLILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYP
Sbjct: 180 HCEIHPSLILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 239

Query: 412 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 471
           QKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSS+DRGFFRS+F+RSY
Sbjct: 240 QKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFFRSIFYRSY 299

Query: 472 RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 531
           RDEEKK GTLVKE+F RP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+ 
Sbjct: 300 RDEEKKQGTLVKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLP 359

Query: 532 QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
           QDE   QA RYT+RD S  LRHSE+GM+DQ +LTTNADGLRFVKVRVRS+RIPQIGDKFS
Sbjct: 360 QDETGTQAQRYTKRDQSTCLRHSESGMIDQXVLTTNADGLRFVKVRVRSIRIPQIGDKFS 419

Query: 592 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
           SRHGQKGTVGMTYTQEDMPWT EGI PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 420 SRHGQKGTVGMTYTQEDMPWTQEGIXPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 479

Query: 652 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIF+GPTYYQRL
Sbjct: 480 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLNAMIFIGPTYYQRL 533


>gi|56694292|gb|AAW22886.1| RNA polymerase II second largest subunit [Isoetes sp. JZ73]
          Length = 536

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/537 (88%), Positives = 505/537 (94%), Gaps = 1/537 (0%)

Query: 168 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 227
           PEGQACGLVKNLALM YITVGSAA PIL FLEEW TENFEEISPAVIPQ+TKIFVNGCWV
Sbjct: 1   PEGQACGLVKNLALMAYITVGSAANPILVFLEEWSTENFEEISPAVIPQSTKIFVNGCWV 60

Query: 228 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 287
           GIHRDPE LVKTLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLI
Sbjct: 61  GIHRDPEHLVKTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLI 120

Query: 288 KKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYA 347
           KK+DI +LQQ+ES E+G W+DLV KGFIEY+DTEEEETTMISMTI+DLV AR +PEEAY+
Sbjct: 121 KKKDIRSLQQKESSENG-WYDLVQKGFIEYVDTEEEETTMISMTISDLVNARNNPEEAYS 179

Query: 348 DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 407
           +TYTHCEIHPS+ILGV  SIIPFPD NQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYV
Sbjct: 180 ETYTHCEIHPSMILGVXGSIIPFPDXNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYV 239

Query: 408 LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 467
           LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRS+F
Sbjct: 240 LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSIF 299

Query: 468 FRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 527
           +RSYR+EE K G+LVKE+F RP+R NT+GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT
Sbjct: 300 YRSYREEEXKQGSLVKEEFERPNRENTLGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 359

Query: 528 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 587
            P+ QDE   QA RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK RVRS+RIPQIG
Sbjct: 360 VPLPQDETGTQAQRYTKRDQSTPLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIG 419

Query: 588 DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 647
           DKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAI SRMTIGQLIECIMGKVAAH
Sbjct: 420 DKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIXSRMTIGQLIECIMGKVAAH 479

Query: 648 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           MGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFE MYNGHTGR L+AMIFLGPTYYQR
Sbjct: 480 MGKEGDATPFTDVTVDNISRALHKCGYQMRGFERMYNGHTGRPLSAMIFLGPTYYQR 536


>gi|55584698|gb|AAV53580.1| RNA polymerase II second largest subunit [Rhodocollybia maculata]
          Length = 721

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/720 (66%), Positives = 574/720 (79%), Gaps = 24/720 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFRKLTKDVYRYMQKCVETHKEFNLALAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTPTMTKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HR+P  LVKT+R+LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q
Sbjct: 182 GVWMGVHREPANLVKTIRKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVEDQ 241

Query: 284 RLLIKKRDIIALQ--QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +L+++K+ +  LQ    +   D  W  LV  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 242 QLVLQKKHVRWLQNGHNDDSADFKWEHLVKSGIIELLDAEEEETVMISMTPEDLENSRLQ 301

Query: 342 -----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                P E                A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 302 QQGIDPHENDGEFDPAARLKSGITAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 361

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 362 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 421

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SG+NQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 422 SGHNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTY 481

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VD
Sbjct: 482 DKLEDDGLIAPGTGVLGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVD 541

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN++G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 542 QVLITTNSEGRKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDI 601

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L   GYQ RG E
Sbjct: 602 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRDRGYQSRGLE 661

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
            M++GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 662 VMFHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 721


>gi|45545343|gb|AAS67519.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Phragmidium sp. MB]
          Length = 931

 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/776 (63%), Positives = 601/776 (77%), Gaps = 37/776 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   +  + KKAY+FGY++HRLLL AL RR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 157 MLPHISMSEGQQGKKAYFFGYMVHRLLLAALDRRDLDDRDHFGKKRLDLAGPLLASLFRI 216

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  ++QKCV+  K  NL  A+K+ TIT+GLKYSLATGNWG Q  A   +AGV
Sbjct: 217 LFRKLTKDVYRHLQKCVEMQKPFNLNAAVKSNTITNGLKYSLATGNWGDQKKAMQAKAGV 276

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHNS WGM+CPAETPEGQACGLVKNL
Sbjct: 277 SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNL 336

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGS + PI+EFLEEWG E+ +E S + +   TK+FVNG W G+HR P  L+ T
Sbjct: 337 ALMSYISVGSPSAPIVEFLEEWGMESLDEYS-SDMASGTKVFVNGVWQGVHRSPADLLDT 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
           ++RLRR  D+  EV V+RD+R +ELR++TD GR  RPLFIVE Q+LL+KK  +  L    
Sbjct: 396 IKRLRRCGDIEPEVSVMRDVRERELRVFTDGGRVCRPLFIVENQQLLLKKEHVEWLSNGC 455

Query: 298 --------RESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH---- 341
                    E PED G    W  LVA+G +EY+D EEEET MI MT  +L Q+R +    
Sbjct: 456 ISASDDPNAEIPEDEGQPFGWSQLVARGIVEYLDAEEEETVMICMTPEELEQSREYQLTG 515

Query: 342 --PEEA-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
             P E              Y+ T+THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMG
Sbjct: 516 QVPREQFDPAARLKGNVSMYSHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMG 575

Query: 387 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
           KQAMG+Y+TN++ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYN
Sbjct: 576 KQAMGVYLTNFRMRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYN 635

Query: 447 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
           QEDSVIMNQSSIDRG FRS ++RSY D+EKK G L  E+F +P R  T+ ++ G+YDKLD
Sbjct: 636 QEDSVIMNQSSIDRGLFRSFYYRSYMDQEKKAGALSMEEFEKPSRETTLRLKQGTYDKLD 695

Query: 507 DDGLAPPGTRVSGEDVIIGKTTPISQ-DEAQGQASR-YTRRDHSISLRHSETGMVDQVLL 564
           +DG+  PGTRVSG+D+IIGKT  I +  E  GQ  + +T+RD S+ L+ +E G++DQVL+
Sbjct: 696 EDGIINPGTRVSGDDIIIGKTASIPEGSEEMGQRDKSHTKRDVSMPLKSTENGIIDQVLI 755

Query: 565 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 624
           TTN+D L+FVKVR+RS RIP+ GDKF+SRHGQKGTVG+ Y QEDMP+T EG+ PDII+NP
Sbjct: 756 TTNSDNLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILYRQEDMPFTSEGVCPDIIINP 815

Query: 625 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 684
           HAIPSRMTIG L+EC++ KV+   G EGDATPF++VTV+ IS  L + GY  RG E M+N
Sbjct: 816 HAIPSRMTIGHLVECLLSKVSTITGNEGDATPFSEVTVEAISSLLKENGYHSRGLEIMFN 875

Query: 685 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           GHTGR+L A  +LGPTYYQRLKHMV+DKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 876 GHTGRKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRF 931


>gi|6606125|gb|AAF19075.1|AF107803_1 DNA-dependent RNA polymerase II RPB140 [Curvularia brachyspora]
          Length = 942

 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/786 (60%), Positives = 589/786 (74%), Gaps = 46/786 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 157 FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 216

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLT+DV  Y+Q+CV+N +D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 217 LFLKLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 276

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 277 SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 336

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VGS A PI++F+ +   +  EE      P ATK+FVNG WVG+H + + LV  
Sbjct: 337 SLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTV 396

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKR-- 290
           ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  K   
Sbjct: 397 VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEIS 456

Query: 291 -DIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
             + A Q   S   G           GW  L+  G +EY+D EEEET MI+ +  DL + 
Sbjct: 457 NKLKAEQSETSTRQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEW 516

Query: 338 --------------------ARLHP-EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                RL P  +    +YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 517 REMKMGLPAAERSTEGKDRLRRLKPLPDPRIHSYTHCEIHPAMILGICASIIPFPDHNQS 576

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 577 PRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 636

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 637 VAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 696

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
           ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 697 LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTMHTKRDVSTPLRST 756

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 757 ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTRE 816

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           G+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTDVTVD IS+ L   GY
Sbjct: 817 GVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDVTVDQISQLLEDAGY 876

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
           Q RGFE MYNGHTG++L   IFLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 877 QKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 936

Query: 735 DGGLRF 740
           DGGLRF
Sbjct: 937 DGGLRF 942


>gi|6606121|gb|AAF19073.1|AF107801_1 DNA-dependent RNA polymerase II RPB140 [Stagonosporopsis
           cucurbitacearum]
          Length = 940

 Score = 1000 bits (2586), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/785 (60%), Positives = 589/785 (75%), Gaps = 45/785 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  +T+KAY+FGY+IHR+L C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 156 FLPHISQREGQDTRKAYFFGYMIHRMLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 215

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLT+DV  Y+Q+CV+N  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 216 LFLKLTKDVYKYLQRCVENNSDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 275

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 276 SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 335

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VGS A PI +F+ +   +  EE      P ATK+FVNG WVG+H + + LV T
Sbjct: 336 SLMCYVSVGSDATPIADFMGKRNMQLLEEYDQNQNPDATKVFVNGVWVGVHNNAQQLVST 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+V+       +  L+  +   
Sbjct: 396 VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVQNDVTKDDRNHLVFNQDHY 455

Query: 293 IALQQRESPEDG-------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ-- 337
             L Q +  +               GW  L+  G IEY+D EEEET MI M+  DL +  
Sbjct: 456 NKLVQEQQAQATAGIGEEEKTALTYGWKGLIQDGVIEYLDAEEEETAMIVMSPEDLGEWR 515

Query: 338 -------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
                              AR+ P+ +     YTHCEIHP++ILG+CASIIPFPDHNQSP
Sbjct: 516 DMKQGIPQDARNPQGKDRLARIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQSP 575

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 576 RNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIV 635

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ +
Sbjct: 636 AIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRL 695

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSE 555
           + G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + S +T+RD S  LR +E
Sbjct: 696 KGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEMGQKTSLHTKRDVSTPLRSTE 755

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
            G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +G
Sbjct: 756 NGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTRDG 815

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           +TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTDVTVD IS+ L   GYQ
Sbjct: 816 VTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGREGDATPFTDVTVDQISELLEDAGYQ 875

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 735
            RGFE MYNGHTG+++   IFLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RD
Sbjct: 876 KRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARD 935

Query: 736 GGLRF 740
           GGLRF
Sbjct: 936 GGLRF 940


>gi|300394768|gb|ADK11922.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
           mollusca]
          Length = 875

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/734 (65%), Positives = 578/734 (78%), Gaps = 26/734 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 143 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 202

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 203 LFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGV 262

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 263 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 322

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 323 ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKT 381

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ +  L Q  
Sbjct: 382 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHVKWLNQGF 441

Query: 300 SPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD- 348
             +DG    W  LV  G IE +D EEEET MISMT  DL  +R+       H  +A  D 
Sbjct: 442 RDDDGEEYKWEQLVKGGIIELLDAEEEETVMISMTPEDLENSRMQSAGIDPHSNDADYDP 501

Query: 349 -----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                      T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+
Sbjct: 502 AARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNF 561

Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSS
Sbjct: 562 LVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 621

Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
           IDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT V
Sbjct: 622 IDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGV 681

Query: 518 SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
           SGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVK
Sbjct: 682 SGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVK 741

Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
           VRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD I+NPHAIP RMTIG 
Sbjct: 742 VRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDXIINPHAIPXRMTIGH 801

Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A +
Sbjct: 802 LVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQV 861

Query: 696 FLGPTYYQRLKHMV 709
           +LGPTYYQRLKHMV
Sbjct: 862 YLGPTYYQRLKHMV 875


>gi|6606127|gb|AAF19076.1|AF107804_1 DNA-dependent RNA polymerase II RPB140 [Pleospora tarda]
          Length = 942

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/786 (60%), Positives = 590/786 (75%), Gaps = 46/786 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 157 FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 216

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLT+DV  Y+Q+CV+N +D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 217 LFLKLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 276

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 277 SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 336

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VGS A PI++F+ +   +  EE      P ATK+FVNG WVG+H + + LV  
Sbjct: 337 SLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTV 396

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
           ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       + +L+  K   
Sbjct: 397 VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDFRRENRNQLVFTKAIS 456

Query: 290 RDIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
             + A QQ  S   G           GW  L+  G +EY+D EEEET MI+ +  DL + 
Sbjct: 457 NKLKAEQQETSTRQGWSQEEVENATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEW 516

Query: 338 --------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
                                RL P  +     YTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 517 REMKMGLPAVERSTEGKDRLRRLKPAPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQS 576

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 577 PRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 636

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ 
Sbjct: 637 VAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLR 696

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHS 554
           ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +
Sbjct: 697 LKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIATDAQELGQKTTLHTKRDVSTPLRST 756

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ E
Sbjct: 757 ENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSKE 816

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           G+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTDVTVD +S+ L   GY
Sbjct: 817 GLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDVTVDQVSQLLEDAGY 876

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
           Q RGFE MYNGHTG+++   IFLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 877 QKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 936

Query: 735 DGGLRF 740
           DGGLRF
Sbjct: 937 DGGLRF 942


>gi|397576311|gb|EJK50184.1| hypothetical protein THAOC_30880 [Thalassiosira oceanica]
          Length = 1299

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/772 (63%), Positives = 583/772 (75%), Gaps = 51/772 (6%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPHVGT + CETKK ++ GY +H+LL+C LGR  EDDRDH+G KRLDLAGPLLGGLFR+
Sbjct: 397  VLPHVGTEEHCETKKGFFLGYAVHKLLMCRLGRVDEDDRDHFGKKRLDLAGPLLGGLFRV 456

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW------------- 107
            LFRKLT+DVR ++Q+C+D GK  N+  AIK+  IT GLKYSLATGN              
Sbjct: 457  LFRKLTKDVRRHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNCESYRKNDCIFVFS 516

Query: 108  --------------GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 153
                          G    A T+AGVSQVLNRLTYAS+LSHLRR N+P+ R GK AKPRQ
Sbjct: 517  CKPNNLMRHLGRLEGGDKGATTKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQAKPRQ 576

Query: 154  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 213
            LHNS WGM+CP ETPEGQA GLVKN+ALM YIT G++  P++EFLEE+ TEN  +I P+V
Sbjct: 577  LHNSHWGMVCPCETPEGQAVGLVKNMALMAYITTGTSQVPVMEFLEEFSTENLTDILPSV 636

Query: 214  IPQAT--KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 271
            I +++  KIFVNG WVG+HRDP  LV T R LRR +D++ EV +VRDI   E+RIYTD G
Sbjct: 637  IAESSTCKIFVNGNWVGVHRDPRHLVHTFRSLRRMIDIDAEVSIVRDITESEVRIYTDAG 696

Query: 272  RCSRPLFIV-EKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGFIEYIDTEEEETTM 327
            R  RPLFIV E Q L IKK  I  +Q     EDG    W DL+ +G +EY+DTEEEETTM
Sbjct: 697  RICRPLFIVNEDQELAIKKHHISQIQGFS--EDGKRLTWTDLLMEGLVEYVDTEEEETTM 754

Query: 328  ISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
            I+M   DL        E Y+ TYTHCEIHPS+ILGVCASIIPFPDHNQSPRN YQSAMGK
Sbjct: 755  IAMEPKDL-------GEGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNVYQSAMGK 807

Query: 388  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 447
            QAMGIY +NYQ RMDT+A+VL+YPQKPL TTRAME L FR+LP+G+N +VAI  Y+GYNQ
Sbjct: 808  QAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLKFRELPSGVNVVVAIMIYTGYNQ 867

Query: 448  EDSVIMNQSSIDRGFFRSLFFRSYRDEEK-----KMGTLVKEDFGRPDRSNTMGMRHGSY 502
            EDS+IMNQS+IDRG FRS ++R Y D+EK      +G L  E F +P   NT GM++G Y
Sbjct: 868  EDSLIMNQSAIDRGLFRSSYYRCYNDQEKAASVGSVGALNSETFEKPTMDNTRGMKYGDY 927

Query: 503  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA-SRYTRRDHSISLRHSETGMVDQ 561
            +KLD+DGL  PGTRVSG+DV+IGKTTP    EA   A SRYT+RD S S++ +E+G+VD 
Sbjct: 928  NKLDEDGLVAPGTRVSGDDVLIGKTTPT---EALANAPSRYTKRDCSTSMKATESGIVDN 984

Query: 562  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
            VL++T  +G RF KVR+R+VR+PQ+GDKF+SRHGQKGTVGMTY QEDMP+T EGI PDII
Sbjct: 985  VLISTTKEGYRFTKVRIRNVRVPQVGDKFASRHGQKGTVGMTYRQEDMPFTCEGIVPDII 1044

Query: 622  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
            VNPHAIPSRMTI QLIECI+GKVA   G EGDATPFTDV VD+++  LH  GYQ  G E 
Sbjct: 1045 VNPHAIPSRMTIAQLIECILGKVAVFQGCEGDATPFTDVHVDDVASRLHAMGYQRHGNEH 1104

Query: 682  MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 733
            MY GHTGR L A +F+GPT+YQRLKH+VDDKIHSR RGPV +LTRQP EG S
Sbjct: 1105 MYQGHTGRPLNARVFIGPTFYQRLKHLVDDKIHSRARGPVAMLTRQPLEGAS 1156


>gi|6606099|gb|AAF19062.1|AF107790_1 DNA-dependent RNA polymerase II RPB140 [Podospora anserina]
          Length = 934

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/777 (61%), Positives = 590/777 (75%), Gaps = 37/777 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   + CET+KA++ GY++++LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 158 MLPHISQTEGCETRKAFFLGYMVNKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRG 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           + R++T+D+  Y+++C+D  K   L   IKA T+T+ LKYSLATGNWG Q  A  + AGV
Sbjct: 218 VVRRMTQDLMGYMKRCLDTNKHFTLALGIKANTLTNALKYSLATGNWGDQKKAMSSTAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 278 SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VG+ A PI++F+   G +  EE  P   P ATK+FVNG WVG+H DP+ LV  
Sbjct: 338 SLMCYVSVGTPADPIVDFMTARGMDVLEEYEPLRAPNATKVFVNGTWVGVHNDPKQLVTL 397

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR---------LLIKKR 290
           ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF VE++           LI  +
Sbjct: 398 VQDLRRKNVISFEVSLVRDIREREFKIFSDAGRVMRPLFTVEQEEKGNHGVEKGQLILNK 457

Query: 291 DIIALQQRES------PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
           D IA  QR+       P+  GW  L+  G IEY+D EEEETTMI MT  DL   R+    
Sbjct: 458 DHIARLQRDKELGKYHPDYWGWQGLLKSGAIEYLDAEEEETTMICMTPQDLDDFRMTKLG 517

Query: 345 AYADT-------------------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
            + +T                   YTHCEIHP+++LG+CASIIPFPDHNQSPRNTYQSAM
Sbjct: 518 FHIETTSGQGNNRIRTKVNKTTHMYTHCEIHPAMLLGICASIIPFPDHNQSPRNTYQSAM 577

Query: 386 GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
           GKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGY
Sbjct: 578 GKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGY 637

Query: 446 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
           NQEDSV+MNQSSIDRG FRSLFFRSY D EK++G  + E F +P R +T+ ++HG+YDKL
Sbjct: 638 NQEDSVVMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEMFEKPTRGDTLRLKHGTYDKL 697

Query: 506 DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVL 563
           D DG+  PG RVSGED+IIGKT+PI+ D A+ GQ   ++ +RD S  LR +E+G+VD V+
Sbjct: 698 DADGIIAPGIRVSGEDIIIGKTSPINPDNAELGQRQQQHVKRDASTPLRSTESGIVDSVV 757

Query: 564 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
           LTTN DG+R+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGITPDII+N
Sbjct: 758 LTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIIN 817

Query: 624 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
           PHAIPSRMTI  L+EC++ KVA   G EGDATPFTDVTVD++S  L + GYQ RGFE +Y
Sbjct: 818 PHAIPSRMTIAHLVECLLSKVATLKGLEGDATPFTDVTVDSVSDLLREQGYQSRGFEILY 877

Query: 684 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           +GHTGR+L A  F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRF
Sbjct: 878 HGHTGRKLRAQCFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 934


>gi|328769515|gb|EGF79559.1| RNA polymerase II second largest subunit precursor [Batrachochytrium
            dendrobatidis JAM81]
          Length = 1312

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/690 (67%), Positives = 557/690 (80%), Gaps = 22/690 (3%)

Query: 156  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
            NS     CPAETPEGQACGLVKNL+LM YITVGS A PILEFLEEW  E+ EEISP+ IP
Sbjct: 624  NSIVSHNCPAETPEGQACGLVKNLSLMGYITVGSPAPPILEFLEEWTMESLEEISPSTIP 683

Query: 216  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
             ATKIF+NG WVGIHRDP+ LV TLRRLRR VDV+ EV VVRD+R +ELR+ TD GR +R
Sbjct: 684  TATKIFLNGQWVGIHRDPDQLVSTLRRLRRSVDVSPEVSVVRDVRDRELRLCTDAGRIAR 743

Query: 276  PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
             LF+V  ++ L+  ++++   Q+   +   W DL++ G +EYIDTEEEET MI MT +DL
Sbjct: 744  SLFVVTPEQSLVLTKEMV---QQLHEDQIQWKDLLSYGVVEYIDTEEEETVMICMTPDDL 800

Query: 336  VQAR-----------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
             +AR                 L     Y   YTHCEIHPS+ILG+CASIIPFPDHNQSPR
Sbjct: 801  AEARMAAAGQVVERHQVGTGRLKSATVYTRNYTHCEIHPSMILGICASIIPFPDHNQSPR 860

Query: 379  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
            N YQSAMGKQAMG+++TN+Q RMDT++ +L+YPQKPL TTRAME +HFR LPAGINA+VA
Sbjct: 861  NVYQSAMGKQAMGLFLTNFQLRMDTMSNILFYPQKPLATTRAMEFMHFRDLPAGINAVVA 920

Query: 439  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
            IACYSGYNQEDS+IMNQSSIDRG FRSL++R Y D+EKK+G +  E   +P R  T+ ++
Sbjct: 921  IACYSGYNQEDSLIMNQSSIDRGLFRSLYYRVYMDQEKKVGMISTETLEKPSRDTTLRLK 980

Query: 499  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSET 556
            HG+Y+KL+DDGL  PG RVSGED+IIGKT PI+ D  + GQ  + +T+RD S  L+ +E 
Sbjct: 981  HGTYEKLEDDGLIAPGVRVSGEDIIIGKTVPIAADSTELGQRTTMHTKRDASTPLKSTEN 1040

Query: 557  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
            G+VDQVL+TTN DG +FVKVRVRS+RIP +GDKF+SRHGQKGTVG+TY  EDMP+T +GI
Sbjct: 1041 GIVDQVLITTNQDGFKFVKVRVRSIRIPHMGDKFASRHGQKGTVGITYRTEDMPFTADGI 1100

Query: 617  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
            TPD+I+NPHAIPSRMTIG L+EC++ KV+   G EGDATPFTDVTV+ IS+AL   GYQ 
Sbjct: 1101 TPDLIINPHAIPSRMTIGHLVECLLSKVSTFTGDEGDATPFTDVTVEAISQALQGYGYQR 1160

Query: 677  RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 736
            RGFE +YNGHTGR+L A ++ GPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDG
Sbjct: 1161 RGFEVLYNGHTGRKLNAQVYTGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDG 1220

Query: 737  GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN 796
            GLRFGEMERDCMI+HGA++FLKERLFD SDAYRVHVC+HCGL+A+ANLKKNSFECR C+N
Sbjct: 1221 GLRFGEMERDCMISHGAANFLKERLFDASDAYRVHVCDHCGLMAVANLKKNSFECRSCRN 1280

Query: 797  KTDIVQVHIPYACKLLFQELMAMAIAPRML 826
            KT I QV++PYACKLLFQELMAM IAPR++
Sbjct: 1281 KTQISQVYLPYACKLLFQELMAMNIAPRLM 1310



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 121/143 (84%), Gaps = 1/143 (0%)

Query: 22  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 81
           +IHRLLL AL RR  DDRDH+G KRLDLAGPLLGGLFRMLFRKLT+DV  Y+Q  +++G+
Sbjct: 1   MIHRLLLAALDRRETDDRDHFGKKRLDLAGPLLGGLFRMLFRKLTKDVSRYLQITMESGR 60

Query: 82  DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 140
           + NL  A+K+ TIT+GLKYSLATGNWG Q      RAGVSQVLNR T+ASTLSHLRRLN+
Sbjct: 61  EFNLSLAVKSSTITNGLKYSLATGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRLNT 120

Query: 141 PIGREGKLAKPRQLHNSQWGMMC 163
           PIGR+GKLAKPRQLHN+ WGM+C
Sbjct: 121 PIGRDGKLAKPRQLHNTHWGMVC 143


>gi|6606135|gb|AAF19080.1|AF107808_1 DNA-dependent RNA polymerase II RPB140, partial [Sclerotinia
           sclerotiorum]
          Length = 938

 Score =  999 bits (2582), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/782 (60%), Positives = 597/782 (76%), Gaps = 42/782 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 157 LLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRN 216

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFR+LT DV  Y+Q+CV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q  AA + AGV
Sbjct: 217 LFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGV 276

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 277 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 336

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LVK 
Sbjct: 337 ALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGVHRDPAHLVKC 396

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRR   ++ EV ++R+IR +E +I+TD GR  RPL +++       K  L++ K  I
Sbjct: 397 VQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSPNKGNLVLNKDHI 456

Query: 293 IALQQRESPEDG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
             L+  +S                G+  L+  G +EY+D EEEET MI+MT  DL  +R 
Sbjct: 457 RRLEDDQSLPSNMDKDEKVHHGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQ 516

Query: 340 ------LHPEEA-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                 + P+++              A  +THCEIHPS+ILG+CASIIPFPDHNQSPRN 
Sbjct: 517 LQAGYQIRPDDSGDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNC 576

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI 
Sbjct: 577 YQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIM 636

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+T+ ++ G
Sbjct: 637 CYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQG 696

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +Y+KLDDDG+  PG RV+G D+IIGKT PI+ D E  GQ ++ + +RD S  LR +E+G+
Sbjct: 697 TYEKLDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGL 756

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY Q+DMP+T EG+ P
Sbjct: 757 VDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVP 816

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L   GY  RG
Sbjct: 817 DLIINPHAIPSRMTIAHLIECQLSKVSSLRGLEGDATPFTEVTVDSVSKLLRAHGYHSRG 876

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
           FE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGL
Sbjct: 877 FEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGL 936

Query: 739 RF 740
           RF
Sbjct: 937 RF 938


>gi|83415475|gb|ABC17945.1| RNA polymerase II second largest subunit, partial [Scutellospora
           heterogama]
          Length = 761

 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/760 (64%), Positives = 578/760 (76%), Gaps = 64/760 (8%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+DLAGPLL  LFRMLF+KLT+D+  Y++KC+D  ++ NL  AIKA+TIT+GLKYSLAT
Sbjct: 2   KRMDLAGPLLASLFRMLFKKLTKDISIYLRKCIDTSREFNLHLAIKAQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-EEISPAVIPQATKIFV 222
           PAETPEGQACGLVKNL+LM YI+VGS++ PI++FLEE+G  N  ++  PA I   TK+FV
Sbjct: 122 PAETPEGQACGLVKNLSLMSYISVGSSSKPIVDFLEEYGMINLNQQFDPANIRDNTKVFV 181

Query: 223 NGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 282
           NG W GI   PE L  TLR LRR VDV+ EV VVRDIR KELRIYTD GR  RPLFIVE 
Sbjct: 182 NGKWAGISTAPEQLANTLRGLRRSVDVSPEVSVVRDIREKELRIYTDAGRVCRPLFIVED 241

Query: 283 QRLLIKKRDIIALQQR----------ESPEDGG--------------------------- 305
           Q L+I K  I  L Q+          E P++                             
Sbjct: 242 QCLVISKELINNLDQKGRTSGQVYDDEYPDEDNRHVDGEEIQGENAQEQSQKRRQDRQVY 301

Query: 306 -WHDLVAKGFIEYIDTEEEETTMISMTINDL---------------------VQARLHPE 343
            WHDL++ G IEYID EEEET MI MT  DL                     V AR+  E
Sbjct: 302 VWHDLISNGAIEYIDAEEEETVMICMTPEDLAASMHFYQTGIARTSKTHEKDVAARVKSE 361

Query: 344 EAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
              +  T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMD
Sbjct: 362 SNLSIHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 421

Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
           TLA +LYYPQKPLVTTRAME L FR+LPAG NAIVAI CYSGYNQE+SVIMNQSSIDRG 
Sbjct: 422 TLANILYYPQKPLVTTRAMEFLRFRELPAGQNAIVAILCYSGYNQENSVIMNQSSIDRGL 481

Query: 463 FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 522
           FRS+F+RSY D+EKK+G L  E+F +P R  T+ ++HG+Y+KL++DGL  PGTRVSG+D+
Sbjct: 482 FRSIFYRSYMDQEKKVGILSIEEFDKPTRETTLRLKHGTYEKLEEDGLIAPGTRVSGDDI 541

Query: 523 IIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 580
           IIGK TPI +   E   + + +T RD S  +R +E G+VDQV++TTNA+G++FVKVRVRS
Sbjct: 542 IIGKVTPIPEHTIELGQRKNTHTHRDASTPMRSTENGIVDQVMVTTNAEGMKFVKVRVRS 601

Query: 581 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 640
            RIPQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+I+NPHAIPSRMTIG L+EC+
Sbjct: 602 TRIPQMGDKFASRHGQKGTIGITYRQEDMPFTSEGITPDLIINPHAIPSRMTIGHLVECL 661

Query: 641 MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
           +GKV+   G+EGDATPFTDVTV+ IS +L + GY  RGFE MYNGHTGR+L A +FLGPT
Sbjct: 662 LGKVSTLTGQEGDATPFTDVTVEAISHSLRQNGYHSRGFEVMYNGHTGRKLAAQVFLGPT 721

Query: 701 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           YYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 722 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 761


>gi|45545331|gb|AAS67513.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Hydnum repandum]
          Length = 887

 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/732 (64%), Positives = 577/732 (78%), Gaps = 26/732 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV  G+  E+KKA++FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 157 MLPHVSMGEGSESKKAFFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRM 216

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  ++QKCV+  KD N+  A+K+ TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 217 LFRKLTKDVYRHLQKCVETHKDFNISIAVKSNTITNGLKYSLATGNWGDQKKSMSSKAGV 276

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 277 SQVLNRYTFASTLSHLRRCNTPLGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 336

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + P++EFL+EWG E+ EE + A    ATK+FVNG W+G+HRD   LVKT
Sbjct: 337 SLMACISVGSLSAPVIEFLQEWGLESLEENANAH-GSATKVFVNGVWMGVHRDAPNLVKT 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           LRRLRR+ D+++EV +VRDIR KELR+YTD GR  RPLFIVE Q+LL+KK  +  L  + 
Sbjct: 396 LRRLRRKDDISSEVSIVRDIREKELRLYTDAGRVCRPLFIVENQQLLLKKEHVNMLNDKS 455

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA-------------- 345
             +   W  LV  G IE +D EEEET MI MT +DL  +R +   A              
Sbjct: 456 RTDPYKWTHLVKDGVIELLDAEEEETVMICMTPDDLENSRTNQAVAAGYVSNAGASDHDV 515

Query: 346 --------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                    A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TNY
Sbjct: 516 AARVRSTMTAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNY 575

Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
           Q RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA VAI CYSGYNQEDSVIMNQSS
Sbjct: 576 QVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNATVAILCYSGYNQEDSVIMNQSS 635

Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
           IDRG FRS+++RSY D EKK+G L  E+F +P R  T+ M+HG+Y+KL+DDGL  PGT V
Sbjct: 636 IDRGLFRSMYYRSYTDAEKKVGVLPLEEFEKPTRDTTLRMKHGTYEKLEDDGLIAPGTGV 695

Query: 518 SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
           +GED+IIGKT P+  D E  GQ  R +TRRD S  L+ +E G+VDQVL+TTN DGL+FVK
Sbjct: 696 AGEDIIIGKTAPLPPDSEELGQRMRTHTRRDVSTPLKSTENGIVDQVLVTTNQDGLKFVK 755

Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
           +R+RS RIPQ+GDKF+SRHGQKGTVG+TY  EDMP+T EGITPDII+NPHAIPSRMTIG 
Sbjct: 756 IRIRSTRIPQVGDKFASRHGQKGTVGITYRHEDMPFTAEGITPDIIINPHAIPSRMTIGH 815

Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           LIEC++ K+A  +G EGDATPFT++TV+++S+ L + GYQ RG E MY+GH+GR+L A +
Sbjct: 816 LIECLLSKLATLIGNEGDATPFTELTVESVSQLLRENGYQSRGLEVMYHGHSGRKLQAQV 875

Query: 696 FLGPTYYQRLKH 707
           +LGPTYYQRLKH
Sbjct: 876 YLGPTYYQRLKH 887


>gi|83415485|gb|ABC17950.1| RNA polymerase II second largest subunit, partial [Rhopalomyces
           elegans]
          Length = 723

 Score =  997 bits (2577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/722 (65%), Positives = 568/722 (78%), Gaps = 26/722 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPL+ GLFRMLFRKLT+DV  Y+Q+ +D  +D NL  A+K+ T+T+GLKYSLAT
Sbjct: 2   KRLDLAGPLIAGLFRMLFRKLTKDVGKYLQRVIDENRDFNLTLAVKSTTLTNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM +I+VG+ + P++EFLEEW   N +E+       ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMTHISVGAPSRPVIEFLEEWAMVNLDEMYKTGTADATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNT----EVGVVRDIRLKELRIYTDYGRCSRPLFI 279
           G WVG+H +P  LV   R  RR     T    EV  V DIR +EL +++D GRC RPL++
Sbjct: 182 GVWVGVHNEPTQLVSVFRNFRRHETAATRVFQEVSCVSDIRERELWMFSDAGRCCRPLYV 241

Query: 280 VEKQRLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
           VE+ RL I K+ +  L +R  E     GW+ L+++G IE+IDTEEEET MI M+  DL +
Sbjct: 242 VEQNRLKITKQQVRVLDERDEEGKRVSGWNRLISEGVIEFIDTEEEETAMICMSPEDLAE 301

Query: 338 ARLHPEEA-----------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           AR + E                   Y+ T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 302 AREYYETGVPRPPSRDPAARISTTIYSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 361

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+Y+TNYQ RMDTLA ++YYPQKPLVTTRAME+L FR LPAG NA VAI 
Sbjct: 362 YQSAMGKQAMGVYLTNYQLRMDTLANIIYYPQKPLVTTRAMEYLKFRDLPAGQNATVAIL 421

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D+EKK G  V E+F +P R  T+ M+HG
Sbjct: 422 CYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYMDQEKKAGVKVMEEFEKPTRDATLRMKHG 481

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHSETGM 558
           +YDKL+DDGL  PG RVSGED+IIGKT P+ ++ A+ GQ +R +TRRD S  LR +ETG+
Sbjct: 482 TYDKLEDDGLIAPGVRVSGEDIIIGKTAPLPEESAELGQRTRSHTRRDISTPLRSTETGI 541

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQV+LTTN +G++FVKVRVRS RIPQ+GDKF+SRHGQKGT+G+TY QEDMP++ +GI P
Sbjct: 542 VDQVMLTTNQEGVKFVKVRVRSTRIPQMGDKFASRHGQKGTIGITYRQEDMPFSADGIVP 601

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTIG ++EC++ KV+   G EGDATPFTDVTVD ISKAL   G+  RG
Sbjct: 602 DLIINPHAIPSRMTIGHMVECLLSKVSTLTGSEGDATPFTDVTVDAISKALAVHGFHQRG 661

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
           FE +YNGHTGR+LTA +FLGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGL
Sbjct: 662 FEVIYNGHTGRKLTAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGL 721

Query: 739 RF 740
           RF
Sbjct: 722 RF 723


>gi|6606119|gb|AAF19072.1|AF107800_1 DNA-dependent RNA polymerase II RPB140 [Dothidea insculpta]
 gi|82706467|gb|ABB89611.1| RNA polymerase II second largest subunit, partial [Dothidea
           insculpta]
          Length = 936

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/782 (60%), Positives = 590/782 (75%), Gaps = 42/782 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  ET+KA++ GY+I+RLL CALGR  EDDRDH+G KRLDLAGPL+  +FR+
Sbjct: 155 FLPHISQKEGSETRKAFFLGYMINRLLQCALGRVEEDDRDHFGKKRLDLAGPLMAQVFRL 214

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            F +L RD R Y+ +CV+ GK+ NL  A+KA  ++SGL+Y LATGNWG Q  AA  +AGV
Sbjct: 215 KFTQLIRDTRVYLSRCVEGGKEFNLTLAVKANILSSGLRYCLATGNWGDQKKAASAKAGV 274

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 275 SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 334

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LVK 
Sbjct: 335 SLMCYVSVGTPSEPIIEFMNQRNMELLEEYEPKNNPDATKVFVNGVWVGVHRDPAQLVKV 394

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
           ++ LRR   ++ E+ ++RD+R +E +I+TD GR  RPLF+V+ +        L++ + +I
Sbjct: 395 VQSLRRSGTISFEISLIRDVRDREFKIFTDAGRVMRPLFVVDNEPTSERRGHLVLARSNI 454

Query: 293 IALQ-QRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
             LQ  RE    G           GW  L+  G IEY+D EEEE  MI+M+  DL + R 
Sbjct: 455 ERLQTDREMDLTGLSEEQRDSNIYGWKGLIGDGIIEYLDAEEEEAAMITMSPEDLDEHRQ 514

Query: 340 ------------LHPEEAY-------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                       L P   +          +THCEIHP++ILG+CASIIPFPDHNQSPRNT
Sbjct: 515 VRAGAPVYDDVGLDPHRRFKAKPNQSVRMWTHCEIHPAMILGICASIIPFPDHNQSPRNT 574

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+ +TNY  RMDT+A VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIA
Sbjct: 575 YQSAMGKQAMGVTLTNYNVRMDTMANVLYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIA 634

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CY GYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P R++T+ M+HG
Sbjct: 635 CYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVEQFEKPTRADTLRMKHG 694

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKLDDDG+  PG+RVSGED+IIGKT P++ D E  GQ ++ + +RD S  LR +E+G+
Sbjct: 695 TYDKLDDDGIISPGSRVSGEDIIIGKTAPMAPDAEELGQRTKLHVKRDVSTPLRSTESGI 754

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           +DQVLLTTN DG +FVKVR R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T +G+ P
Sbjct: 755 IDQVLLTTNIDGHKFVKVRTRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTADGLVP 814

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVT+  +S  L   G+Q RG
Sbjct: 815 DLIINPHAIPSRMTIAHLIECLLSKVGALRGQEGDATPFTDVTITQVSDLLRAHGFQQRG 874

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
           FE MYNGHTG++  A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGL
Sbjct: 875 FEIMYNGHTGKKQVAQVFLGPTYYQRLRHMVDDKIHARARGPXQILTRQPVEGRARDGGL 934

Query: 739 RF 740
           RF
Sbjct: 935 RF 936


>gi|520511|gb|AAA50226.1| RNA polymerase II, second largest subunit, partial [Crassostrea
           gigas]
          Length = 859

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/711 (67%), Positives = 570/711 (80%), Gaps = 10/711 (1%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG  DFCETKKAY+ GY++HRLLL A+GRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 154 MLPHVGVSDFCETKKAYFLGYMVHRLLLAAIGRREVDDRDHYGNKRLDLAGPLLAFLFRG 213

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFR L ++VR Y QK +D GKD NL+ AIK + IT GLKYSLATGNWG Q  A   RAGV
Sbjct: 214 LFRNLMKEVRLYAQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGV 273

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+QWGM+CPAETPEG A GLVKNL
Sbjct: 274 SQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTQWGMICPAETPEGSAVGLVKNL 333

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGS   PILEFLEEW  EN EE+SP+ I  ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 334 ALMAYISVGSQPSPILEFLEEWSMENLEEVSPSAIQDATKIFVNGCWVGIHRDPEQLMNT 393

Query: 240 LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
           LR+LRR +D+  +EV ++RDIR +E+RIYTD GR  RPL IVE Q+LL+K+  I  L+QR
Sbjct: 394 LRKLRREMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKQSHIKQLKQR 453

Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
           E   +  W DLVA G +EYID  EEE+ M++MT +DL    +     Y  TYTHCEIHP+
Sbjct: 454 EY-NNYSWQDLVASGVVEYIDPLEEESIMLAMTPDDLSDKDVQ----YCSTYTHCEIHPA 508

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+ L YPQKPLVTT
Sbjct: 509 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHGLLYPQKPLVTT 568

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVI+N S+I+RGFFRS FFRSY+D E K 
Sbjct: 569 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIINASAIERGFFRSFFFRSYKDSESKK 628

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK--TTPISQDEAQ 536
           G   +E F +P R N  GMR   YDKLD+DG+  PG RVSG+DV+IGK  T P ++DE +
Sbjct: 629 GLDQEEIFEKPTRENVQGMRQAVYDKLDEDGIISPGIRVSGDDVLIGKTLTLPANEDELE 688

Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           G   R+T+RD S+ +R SETG++DQV++T N +G +F K+RVR+V+ PQIGDKF+SRHGQ
Sbjct: 689 GTTKRFTKRDASVFMRRSETGIIDQVMITLNQEGYKFCKIRVRTVKTPQIGDKFASRHGQ 748

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGT G+TY QEDMP+T EGITPDII+NPHA+PSRMTIG LIEC+ GKVAA+ G+ GDATP
Sbjct: 749 KGTCGITYRQEDMPFTCEGITPDIIINPHAVPSRMTIGHLIECLQGKVAANKGEIGDATP 808

Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           F D V V  +S  LH+ GY  RG E ++NG TGR+L A IFLGPTYYQRLK
Sbjct: 809 FNDAVNVQKVSNLLHQYGYHQRGNEVLFNGFTGRKLNAQIFLGPTYYQRLK 859


>gi|6606129|gb|AAF19077.1|AF107805_1 DNA-dependent RNA polymerase II RPB140 [Preussia minima]
          Length = 937

 Score =  995 bits (2572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/783 (60%), Positives = 592/783 (75%), Gaps = 43/783 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  +T+KA++FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 155 FLPHISQKEGQDTRKAFFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 214

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLT+D+  Y++KCVD  ++ N   A+KA  +T+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 215 LFLKLTKDMFNYLRKCVDAEQEFNATLALKASIVTNGLKYSLATGNWGDQKKAASAKAGV 274

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 275 SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 334

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VG+ + PI++F+ +   +  EE  P   P ATK+FVNG WVG+H +P  LV  
Sbjct: 335 SLMCYVSVGNESAPIIDFMSQRNMDLLEEYDPIQNPTATKVFVNGTWVGVHSNPSQLVSV 394

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L++ K  I
Sbjct: 395 VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVETNYNKPNRGSLVLTKAHI 454

Query: 293 IALQ-QRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
             LQ  +E    G           GW  L+  G +EY+D EEEE  MI M+  DL + R 
Sbjct: 455 EKLQADKEIDTSGMNDEDTAERKYGWFGLIHDGVVEYLDAEEEEGAMIIMSPEDLDEHRD 514

Query: 340 ----LHPEEAYAD----------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
                  +E   D                TYTHCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 515 LMQGTQTQEDKEDNDRHKRIKPKPNPSIKTYTHCEIHPSMILGICASIIPFPDHNQSPRN 574

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 575 TYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLRFRELPAGQNAIVAI 634

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           ACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R +T+ ++ 
Sbjct: 635 ACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRQDTLRLKG 694

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHSETG 557
           G+YDKLDDDG+  PG RVSG+D+IIGKT PI  D  + GQ ++ +T+RD S  LR +E G
Sbjct: 695 GTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIPGDAQELGQKTQNHTKRDVSTPLRSTENG 754

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+T
Sbjct: 755 IVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLT 814

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMTI  L+EC++ KV +  G EGDATPFTDVTV+++SK L + GYQ R
Sbjct: 815 PDLIINPHAIPSRMTIAHLVECLLSKVGSLKGAEGDATPFTDVTVESVSKLLVEHGYQQR 874

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
           GFE MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGG
Sbjct: 875 GFEVMYNGHTGKKLRAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGG 934

Query: 738 LRF 740
           LRF
Sbjct: 935 LRF 937


>gi|83415503|gb|ABC17959.1| RNA polymerase II second largest subunit, partial [Rhizophagus
           intraradices]
          Length = 764

 Score =  995 bits (2572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/763 (63%), Positives = 577/763 (75%), Gaps = 67/763 (8%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+DLAGPLL  LFRMLF+KLT+DV AY++KC+D  ++ NL  AIKA+TIT+GLKYSLAT
Sbjct: 2   KRMDLAGPLLASLFRMLFKKLTKDVSAYLRKCIDGNREFNLNLAIKAQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-EEISPAVIPQATKIFV 222
           P+ETPEGQACGLVKNL+LM YI+VGSA+ PI++FLEE+G  N  ++  PA I    K+FV
Sbjct: 122 PSETPEGQACGLVKNLSLMSYISVGSASKPIIDFLEEYGMINLNQQFDPANIRDNAKVFV 181

Query: 223 NGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 282
           NG WVGI   PE L  TL+ LRR VDV+ EV VVRDIR KELRIYTD GR  RPLFIVE 
Sbjct: 182 NGKWVGISSSPEQLSYTLKGLRRTVDVSPEVSVVRDIREKELRIYTDAGRVCRPLFIVES 241

Query: 283 QRLLIKKRDIIAL-------QQRES----------------------PEDG--------- 304
            RL I K  I  L       Q  ES                      PE           
Sbjct: 242 ARLKITKGLIQKLDKNRQAGQVEESDDDLFDDDENIDDDMEEEDIDNPEQPSRRRRKKKK 301

Query: 305 ---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD------------- 348
              GW +L++   +EYID EEEET MI MT  DL  +R+  E                  
Sbjct: 302 SSFGWQELISNSVVEYIDAEEEETVMICMTPEDLASSRVFHETGEVKQEKAHERDIAARV 361

Query: 349 ---------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 399
                    T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q 
Sbjct: 362 KTDTNLKIYTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNHQL 421

Query: 400 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 459
           RMDTLA +LYYPQKP+VTTRAME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSID
Sbjct: 422 RMDTLANILYYPQKPVVTTRAMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID 481

Query: 460 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 519
           RG FRS+F+RSY D+EKK+G L  E+F +P +  T+ ++HG+Y+KL+DDGL  PGTRVSG
Sbjct: 482 RGLFRSIFYRSYMDQEKKVGMLTIEEFEKPTKETTLRLKHGTYEKLEDDGLIAPGTRVSG 541

Query: 520 EDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 577
           +D+IIGK TPIS +  E   + + +T+RD S  +R +ETG+VDQV++TTNA+G++FVKVR
Sbjct: 542 DDIIIGKVTPISNETLELGQRQTTHTQRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVR 601

Query: 578 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 637
           VRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+++NPHAIPSRMTIG L+
Sbjct: 602 VRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFTAEGIAPDLVINPHAIPSRMTIGHLV 661

Query: 638 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 697
           EC++GKV+   G+EGDATPFTDVTV+ IS++L   GYQ RGFE MYNGHTGR+L A +FL
Sbjct: 662 ECLLGKVSTLTGQEGDATPFTDVTVEAISQSLRLQGYQSRGFEVMYNGHTGRKLAAQVFL 721

Query: 698 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 722 GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 764


>gi|120561259|gb|ABM27014.1| RNA polymerase II second largest subunit, partial [Allomyces
           macrogynus]
          Length = 867

 Score =  995 bits (2572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/723 (64%), Positives = 570/723 (78%), Gaps = 22/723 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+G    C+T+K+Y+ GY++HRLLL ALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 148 LLPHIGITPGCQTRKSYFIGYMVHRLLLAALGRRQVDDRDHFGKKRLDLAGPLLASLFRT 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            F+KLT+DV  Y   C++ G++ NL  AI + TIT+GL+Y+LATGNWG Q     TRAGV
Sbjct: 208 FFQKLTKDVSRYFTVCIERGREFNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGSA+ PILEFLEEW TEN EEI+ + I   TK+FVNG WVGIHR P+ LV+T
Sbjct: 328 ALMAYISVGSASGPILEFLEEWTTENLEEITASAIGSNTKVFVNGSWVGIHRQPDSLVQT 387

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           L  LRR  D+  EV VVRD+R  ELRIYTD GR  RPLFIV +Q+ L+ +RD +A   R 
Sbjct: 388 LISLRRSGDIMPEVSVVRDVRDNELRIYTDAGRICRPLFIVNEQQQLVLRRDHVA---RL 444

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP--EEAYADT-------- 349
              + GW DL+A G +EY+DTEEEETTMI MT +DL ++R  P  +++  D         
Sbjct: 445 EVGEWGWEDLLANGIVEYLDTEEEETTMICMTPDDLAESRGDPIPDKSKLDKTARLKSRK 504

Query: 350 -------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
                  ++HCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q RMD
Sbjct: 505 AGDVCKQWSHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGLYLTNFQLRMD 564

Query: 403 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
           TLA +LYYPQKPLV TR+M++L FR+LPAG NA+VAIA YSGYNQEDS+IMNQSSIDRG 
Sbjct: 565 TLANILYYPQKPLVATRSMKYLRFRELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGL 624

Query: 463 FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 522
           FRS+++R+Y D+EKK G    E F +P R  T+ +RHGSYDK+++DGL  PGTRV+G+D+
Sbjct: 625 FRSIYYRAYMDQEKKSGFSDVETFEKPTRETTLKLRHGSYDKIEEDGLVAPGTRVTGDDI 684

Query: 523 IIGKTTPISQDEAQ-GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 581
           IIGKT P+  D ++ G  +  T++D S SL+ +E G+VD V+LTTN DG +FVKVRVRS 
Sbjct: 685 IIGKTAPLPPDTSEMGARTTQTKKDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRST 744

Query: 582 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 641
           R+PQ+GDKF+SRHGQKGTVGMTY QEDMP++ +G+TPD+IVNPHAIPSRMTIG L+EC++
Sbjct: 745 RVPQMGDKFASRHGQKGTVGMTYRQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLL 804

Query: 642 GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 701
            KV +  G EGDATPFTD+TV  I+  L  CGYQ RGFE MYNGHTG++L A +F GPTY
Sbjct: 805 SKVGSLTGTEGDATPFTDITVQEIADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFGPTY 864

Query: 702 YQR 704
           YQR
Sbjct: 865 YQR 867


>gi|55273993|gb|AAV48867.1| RNA polymerase II second largest subunit [Armillaria mellea]
          Length = 884

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/739 (65%), Positives = 578/739 (78%), Gaps = 27/739 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH G  RLDLAGPLL  LFRM
Sbjct: 148 MLPHVSMSEGSESKKAYFFGYMIHRLLLAALERRELDDRDHLGKNRLDLAGPLLANLFRM 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRK  RDV  Y+QKCV+  K+ N+   +K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 208 LFRKFNRDVYRYLQKCVETHKEFNVSVGVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E  EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 328 ALMSCISVGSYSAPVIEFLEEWGLETLEENAHSATP-CTKVFVNGVWMGVHRDPANLVKT 386

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L+++K+ I  L  R 
Sbjct: 387 IKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLVLQKKHIKWLV-RG 445

Query: 300 SPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA---- 345
           + +DG    W  L+  G IE +D EEEET MISMT  DL  +RL       H  +     
Sbjct: 446 TNDDGEEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQQSGVDIHANDGDFDP 505

Query: 346 --------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
                    A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+
Sbjct: 506 AARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNF 565

Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSS
Sbjct: 566 LIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 625

Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
           IDRG FRS+++RSY D EK  G    E F +P R +T+ M+HG+YDKL+DDGL  PGT V
Sbjct: 626 IDRGLFRSIYYRSYMDVEKNNGIHSMEVFEKPMRESTLRMKHGTYDKLEDDGLIAPGTGV 685

Query: 518 SGEDVIIGKTTPI-SQDEAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
            GED+IIGKT PI  + E  GQ +R +TRRD S  L+++E G+VDQVL+TTN +G +FVK
Sbjct: 686 VGEDIIIGKTAPIPPESEELGQRTRMHTRRDVSTPLKNTERGIVDQVLVTTNYEGQKFVK 745

Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
           VRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG 
Sbjct: 746 VRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGH 805

Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A +
Sbjct: 806 LVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQV 865

Query: 696 FLGPTYYQRLKHMVDDKIH 714
           +LGPTYYQRLKHMVDDKIH
Sbjct: 866 YLGPTYYQRLKHMVDDKIH 884


>gi|83415501|gb|ABC17958.1| RNA polymerase II second largest subunit, partial [Boothiomyces
           macroporosum]
          Length = 714

 Score =  994 bits (2569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/717 (66%), Positives = 570/717 (79%), Gaps = 25/717 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLLGGLFRMLF+KLT+D+  YVQK ++ GK+ NL  A+K+  IT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLGGLFRMLFKKLTKDISKYVQKSMELGKEFNLSLAVKSGIITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q      RAGVSQVLNR T+ASTLSHLRRLN+PIGR+GKLAKPRQLH++ WGM+C
Sbjct: 62  GNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRLNTPIGRDGKLAKPRQLHDTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM YITVGSA+ P+LEFL+EW  E+ E+I+P  IP ATK+F+N
Sbjct: 122 PAETPEGQACGLVKNLSLMAYITVGSASRPVLEFLDEWTMESLEDINPGQIPSATKVFLN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-K 282
           G WVG+HR P+ LV  LR LRR +D++ EV VV D+R KELRIYTD GR  R LFIV  +
Sbjct: 182 GAWVGVHRYPDELVNNLRTLRRSLDISPEVSVVHDVRDKELRIYTDPGRICRSLFIVSPE 241

Query: 283 QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 342
           QRLL+ K  + AL  +E      W+DL+A G +EYIDTEEEET MI M+  DL+ ARL  
Sbjct: 242 QRLLLTKPIVEALNSKEMT----WNDLLANGIVEYIDTEEEETIMIVMSPEDLMDARLAV 297

Query: 343 E---------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
           +                 YA  YTHCEIHPS+ILG+CASIIPFPDHNQSPRN YQSAMGK
Sbjct: 298 QGQQITQQEGHQRLKSAVYARNYTHCEIHPSMILGICASIIPFPDHNQSPRNVYQSAMGK 357

Query: 388 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 447
           QAMGI++TN+Q RMDT+  +L+YPQKPL TT+AM +++F +LPAG N +VAIACY+GYNQ
Sbjct: 358 QAMGIFLTNFQMRMDTMGNILFYPQKPLATTQAMRYMNFGELPAGQNVVVAIACYTGYNQ 417

Query: 448 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 507
           EDS+IMNQSSIDRG FRSL++R Y D+EKK G L  E   +P R  T+ M+HGSYDKL+D
Sbjct: 418 EDSLIMNQSSIDRGMFRSLYYRVYMDQEKKSGLLESECIEKPTRDTTLRMKHGSYDKLED 477

Query: 508 DGLAPPGTRVSGEDV--IIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVL 563
           DGL  PG RVSGED+  IIGKT PI ++  + GQ +  +T+RD S  L+ +E G+VD V+
Sbjct: 478 DGLIAPGVRVSGEDIDIIIGKTVPIPENSVELGQRTVNHTKRDASTPLKSTENGIVDNVM 537

Query: 564 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
           +TTN DG +FVKVR+RS+RIPQ+GDKF+SRHGQKGTVG+TY  EDMP+T +GITPD+I+N
Sbjct: 538 VTTNQDGFKFVKVRIRSIRIPQMGDKFASRHGQKGTVGITYRTEDMPFTADGITPDLIIN 597

Query: 624 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
           PHAIPSRMTIG L+EC++ KV+   G EGDATPFTDVTV+ IS+AL   GYQ RGFE +Y
Sbjct: 598 PHAIPSRMTIGHLVECLLSKVSTFTGNEGDATPFTDVTVEAISQALAAQGYQRRGFEVLY 657

Query: 684 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           NGHTGR+L A I+ GPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDGGLRF
Sbjct: 658 NGHTGRKLNAQIYTGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 714


>gi|45545335|gb|AAS67515.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Mycosphaerella punctiformis]
          Length = 935

 Score =  993 bits (2566), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/783 (60%), Positives = 591/783 (75%), Gaps = 43/783 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  ETKKA++ GY+++R+L CALGR  EDDRDH+G KRLDLAGPL+  +FR+
Sbjct: 153 FLPHISQEEGSETKKAFFLGYMVNRMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRL 212

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            F +L ++++ Y+ +CV+ G+D N+  AIK   +TSGL+Y LATGNWG Q  A+  +AGV
Sbjct: 213 KFVQLVKEMKMYLHRCVEGGRDFNITLAIKTNILTSGLRYCLATGNWGDQKKASSAKAGV 272

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 273 SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 332

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y+TVG+   P+ +F+ + G +  EE  P + P++TK+F+NG WVG+H++   L +T
Sbjct: 333 SLMCYVTVGTPGEPLTDFMRQRGMDLLEEYDPVLEPKSTKVFINGTWVGVHKNAGQLTET 392

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-------EKQRLLIKKRDI 292
           LR LRR+  ++ EV ++RD+R +E+R++TD GR  RPLF+V       E+  L++++  +
Sbjct: 393 LRSLRRKGLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNKPDAAERGSLVLRQDQV 452

Query: 293 IALQQRE---------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
             LQQ +         S ED      GW  LV +G +EY+D EEEET MI MT  DL + 
Sbjct: 453 AKLQQDQENAASLRGISEEDKALHSYGWMGLVNEGVVEYLDAEEEETAMIIMTPEDLDEH 512

Query: 339 R-LHPEEAYAD------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           R L     Y D                  T+THCEIHP++ILG+CASIIPFPDHNQSPRN
Sbjct: 513 RALRSGAEYDDPKSDPHRRIKPKPNMQVHTWTHCEIHPAMILGICASIIPFPDHNQSPRN 572

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+ +TNY  RMDT+A VLYYPQKPL TTR+ME L FR LPAG NAIVAI
Sbjct: 573 TYQSAMGKQAMGVTLTNYNVRMDTMANVLYYPQKPLATTRSMEFLKFRDLPAGQNAIVAI 632

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           A YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F RP+R+ TM M+H
Sbjct: 633 ASYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVESFERPERAATMKMKH 692

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
           GSYDKLDDDG+  PG RVSG D++IGKT P++ D E  G  ++   +RD S  LR +E G
Sbjct: 693 GSYDKLDDDGIVSPGCRVSGGDMLIGKTAPMAPDAEELGMRTKMQVKRDVSTPLRSTENG 752

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVLLTTN +GLRF KVR R  ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ +G+ 
Sbjct: 753 VVDQVLLTTNTEGLRFAKVRTRVTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSADGLV 812

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVTV +IS  L   G+Q R
Sbjct: 813 PDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPFTDVTVTSISMILADHGFQQR 872

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
           GFE MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGR+RDGG
Sbjct: 873 GFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQVLTRQPVEGRARDGG 932

Query: 738 LRF 740
           LRF
Sbjct: 933 LRF 935


>gi|45120568|gb|AAO64656.2| RNA polymerase II subunit RPB2, partial [Echinodontium tinctorium]
          Length = 871

 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/743 (64%), Positives = 580/743 (78%), Gaps = 29/743 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E++KAY+FGY+IHRLLL A+ RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 130 MLPHVSMSEGSESRKAYFFGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRM 189

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRDV  ++QKCV+  K+ NL  AIK  TIT+GLKYSLATGNWG Q  A   +AGV
Sbjct: 190 LFRKLTRDVYRHLQKCVETHKEFNLNLAIKHTTITNGLKYSLATGNWGDQKKAMSAKAGV 249

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 250 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 309

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS +  I++FLEEWG E+ EE + +     TK+FVNG WVGIHRDP  L+ T
Sbjct: 310 SLMACISVGSTSGTIVDFLEEWGLESLEENAHSST-LTTKVFVNGVWVGIHRDPTNLIST 368

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
           L++LRR+ DV+ EV +VRDIR +ELRIYTD G   RPLF+VE  +L+++K+ +  + Q  
Sbjct: 369 LKKLRRKDDVHPEVSIVRDIRERELRIYTDPGXVCRPLFVVENHQLVLEKKHVQWVSQGY 428

Query: 298 RESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP--------EEAYAD 348
           R+ P D   W  L+  G IE +D EEEET MI MT  DL  +RL          E+   D
Sbjct: 429 RDHPXDPFHWSQLIKTGVIEMLDAEEEETVMICMTPEDLENSRLQAAGIDPHANEDQEFD 488

Query: 349 --------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 394
                         T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+
Sbjct: 489 PAARLKAASGLTPHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYL 548

Query: 395 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 454
           TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMN
Sbjct: 549 TNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMN 608

Query: 455 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 514
           QSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK+++DGL  PG
Sbjct: 609 QSSIDRGLFRSIYYRSYMDMEKKAGVQQVEEFEKPTRDTTLHMKHGTYDKIENDGLIAPG 668

Query: 515 TRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLR 572
           T V+G D+IIGKT P+  D E  GQ SR +TRRD S  L+ +E+G+VDQVL+TTN +G +
Sbjct: 669 TGVNGADIIIGKTAPLPVDSEELGQRSRLHTRRDVSTPLKSTESGIVDQVLVTTNHEGHK 728

Query: 573 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
           FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMT
Sbjct: 729 FVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMT 788

Query: 633 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 692
           IG L+EC++ KVA  +G EGDATPFTD+TV+++SK L + GYQ RG E MY+GHTGR+L 
Sbjct: 789 IGHLVECLLSKVATLIGNEGDATPFTDLTVESVSKFLLQQGYQSRGLEVMYHGHTGRKLQ 848

Query: 693 AMIFLGPTYYQRLKHMVDDKIHS 715
           A ++LGPTYYQRLKHMVDDKIH+
Sbjct: 849 AQVYLGPTYYQRLKHMVDDKIHA 871


>gi|56694334|gb|AAW22907.1| RNA polymerase II second largest subunit [Araucaria araucana]
          Length = 523

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/526 (88%), Positives = 498/526 (94%), Gaps = 3/526 (0%)

Query: 189 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 248
           S+A PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1   SSANPILEFLEEWSTENFEEISPAVIPTATKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 249 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 308
           VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK+DI  L  R++PE+G WH+
Sbjct: 61  VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKKDINEL--RQNPEEG-WHE 117

Query: 309 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 368
           LV KGFIEY+DTEEEE TMISMTINDLV AR +PE+AY+ TYTHCEIHPSLILGVCASII
Sbjct: 118 LVNKGFIEYVDTEEEEXTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLILGVCASII 177

Query: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 428
           PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY LYYPQKPLVTTRAMEHLHFRQ
Sbjct: 178 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYXLYYPQKPLVTTRAMEHLHFRQ 237

Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 488
           LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGR
Sbjct: 238 LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGR 297

Query: 489 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 548
           P+R NT G RHGS DKLD+DGLAPPGTRVSGEDVIIGKTTPI+QDE  GQ SR++RRD S
Sbjct: 298 PNRENTXGXRHGSXDKLDEDGLAPPGTRVSGEDVIIGKTTPITQDEQGGQLSRFSRRDQS 357

Query: 549 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
            SLRHSE+GMVDQVLLTTN DGLRFVK+R+RSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 358 TSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 417

Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
           MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 669 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 478 LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIH 523


>gi|56694308|gb|AAW22894.1| RNA polymerase II second largest subunit [Marsilea quadrifolia]
          Length = 539

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/540 (87%), Positives = 492/540 (91%), Gaps = 1/540 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALM YITVGSAA PILEFLEEW TEN EEISPAVI QATKIFVNGC
Sbjct: 1   ETPEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENXEEISPAVITQATKIFVNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR+P++LV+TLR+LRR+VDVNTEVGVVRD  LKELR+YTDYGRCSRPLFIVE QRL
Sbjct: 61  WVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVRDFSLKELRLYTDYGRCSRPLFIVENQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           +IKK DI  LQQRES E  GW+DLV KGFIEY+DTEEEETTMIS TI DLV ARLHPEEA
Sbjct: 121 VIKKSDIRDLQQRESSE-SGWYDLVTKGFIEYVDTEEEETTMISXTIQDLVNARLHPEEA 179

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y+D YTHCEIHPS+I            HNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 180 YSDXYTHCEIHPSMIXXXXXXXXXXXXHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 239

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED VIMNQSSIDRGFFRS
Sbjct: 240 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDXVIMNQSSIDRGFFRS 299

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           +F+RSYRDEEKK GTLVKE+F RP R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 300 IFYRSYRDEEKKQGTLVKEEFERPSRENTSGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 359

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KTTP++QDE   QA RYT+RD S  LRHSE+GM DQVLLTTNADGLRFVK+RVRS+RIPQ
Sbjct: 360 KTTPVAQDETGTQAQRYTKRDQSTCLRHSESGMXDQVLLTTNADGLRFVKIRVRSIRIPQ 419

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 420 IGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 479

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATP TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 480 AHMGKEGDATPXTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 539


>gi|6606103|gb|AAF19064.1|AF107792_1 DNA-dependent RNA polymerase II RPB140, partial [Microascus
           trigonosporus]
          Length = 937

 Score =  984 bits (2543), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/778 (59%), Positives = 586/778 (75%), Gaps = 39/778 (5%)

Query: 2   LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
           LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR +
Sbjct: 160 LPHISQAEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLSKLFRNI 219

Query: 62  FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
            R++  ++ +Y++ C+ N ++  +   I+  T+T+G+KYSLATGNWG Q  A  + AGVS
Sbjct: 220 MRRMNTELTSYMKMCIQNNRNFQISQGIRITTLTNGMKYSLATGNWGDQKKAMSSTAGVS 279

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 280 QVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 339

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LM +++VG+   PI EF+ +   E  EE  P   P ATK+FVNG WVG+H++P+ L++ +
Sbjct: 340 LMCFVSVGTPTDPIEEFMIDREMEIVEEYEPLRFPNATKVFVNGAWVGVHQEPQRLMEEM 399

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR----------LLIKKR 290
            + RR      EV +VRDIR +E ++++D GR  RP+F+V ++           L++ K 
Sbjct: 400 IKARRVNSFPAEVSLVRDIRDREFKVFSDAGRVMRPVFVVNRENNEYEGVQKGTLVLSKE 459

Query: 291 DIIAL-QQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL-------VQAR 339
            +  L ++R+ P +     W DLV  G +EY+D EEEET MI MT  DL       V+  
Sbjct: 460 QVAQLTEERDLPTEQRKLKWEDLVRSGAVEYLDAEEEETAMICMTPEDLELFRQTKVEGH 519

Query: 340 LHPEEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
             P     D               TYTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 520 QVPPPNINDEPNRRLKTDLNPTTYTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 579

Query: 385 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
           MGKQAMG ++TNY  RMDT+A +LYYPQKPL TT AMEHL FR+LPAG NAIVAIACYSG
Sbjct: 580 MGKQAMGFFLTNYMRRMDTMANILYYPQKPLATTMAMEHLKFRELPAGQNAIVAIACYSG 639

Query: 445 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
           YNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P RS T+ ++HG+YDK
Sbjct: 640 YNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLLEQFEKPFRSETLRLKHGTYDK 699

Query: 505 LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQV 562
           LD+DG+  PG RVSGED+IIGKT+P+S +  + GQ  +++T+RD S  LR +E+G+VD V
Sbjct: 700 LDEDGIVAPGVRVSGEDIIIGKTSPLSPESQELGQRTTQHTQRDASTPLRSTESGIVDSV 759

Query: 563 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 622
           + TTNADG+++VKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+
Sbjct: 760 VFTTNADGMKYVKVRVRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIII 819

Query: 623 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 682
           NPHAIPSRMTI  LIEC++ KVA   G EGDATPFTDVTVD++S  L   GY  RGFE M
Sbjct: 820 NPHAIPSRMTIAHLIECLLSKVATLKGLEGDATPFTDVTVDSVSALLRAEGYHSRGFEIM 879

Query: 683 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           YNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRF
Sbjct: 880 YNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 937


>gi|45545347|gb|AAS67521.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Sphaerophorus globosus]
          Length = 903

 Score =  981 bits (2535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/748 (63%), Positives = 579/748 (77%), Gaps = 41/748 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 156 LLPHISQSEGTETRKAFFLGYMVHRLLQCALGRREVDDRDHFGKKRLDLAGPLLAGLFRM 215

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLT+DV  Y+Q+CV+N K+ NL  A+K+ T+T+GLKYSLATGNWG Q  AA ++AGV
Sbjct: 216 LFNKLTKDVYKYLQRCVENNKEFNLTLAVKSTTLTNGLKYSLATGNWGDQKKAASSKAGV 275

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 276 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 335

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YITVG+ + PI++F+ + G +  EE  P   P ATKIFVNG WVG+HRDP  LV T
Sbjct: 336 ALMCYITVGTPSEPIIDFMVQRGMDLLEEYEPLNSPNATKIFVNGVWVGVHRDPAHLVST 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
           ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 396 VQNLRRRGHLSHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSNNCGNLVLTKDHI 455

Query: 293 IALQQ---------RESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
             L++          +  ED   GW  LV  G +EY+D EEEET MI MT  DL     +
Sbjct: 456 AKLEEDKEMGMSMDAQEREDKLMGWTGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQI 515

Query: 337 QA-RLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
           QA    PE+   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 516 QAGYTMPEQNPDDLNKRVKAPLNQTSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 575

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 576 QSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 635

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS+T+ ++HG+
Sbjct: 636 YSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGMSVVEQFEKPMRSDTLKLKHGT 695

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ +T+RD S  LR +E G+V
Sbjct: 696 YDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKQHTKRDTSTPLRSTENGIV 755

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLL+TN+DGLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 756 DQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPD 815

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++S+ L + GYQ RGF
Sbjct: 816 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSRLLREHGYQSRGF 875

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           E MYNGHTG++L A +FLGPTYYQRL+H
Sbjct: 876 EIMYNGHTGQKLRAQVFLGPTYYQRLRH 903


>gi|45120572|gb|AAO64666.2| RNA polymerase II subunit RPB2, partial [Lycoperdon pyriforme]
          Length = 849

 Score =  980 bits (2534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/724 (65%), Positives = 570/724 (78%), Gaps = 25/724 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 127 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 186

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 187 LFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 246

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 247 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 306

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L+KT
Sbjct: 307 ALMSCISVGSYSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHRDPANLMKT 365

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
           +++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL++K+ I  L    
Sbjct: 366 IKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQKKHIRWLNSGF 425

Query: 298 RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA----- 345
            E   +  W  ++  G IE +D EEEET MISMT  DL  +RL       H  +      
Sbjct: 426 DEEGSEYKWEQMIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDPA 485

Query: 346 -------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+ 
Sbjct: 486 ARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 545

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 546 IRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 605

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V 
Sbjct: 606 DRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLEDDGLIAPGTGVR 665

Query: 519 GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +FVKV
Sbjct: 666 GEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKV 725

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+++NPHAIPSRMTIG L
Sbjct: 726 RVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHL 785

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
           +EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A ++
Sbjct: 786 VECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 845

Query: 697 LGPT 700
           LGPT
Sbjct: 846 LGPT 849


>gi|55831373|gb|AAV66545.1| RNA polymerase II second largest subunit [Fomitiporia mediterranea]
          Length = 898

 Score =  980 bits (2534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/776 (61%), Positives = 584/776 (75%), Gaps = 65/776 (8%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 125 MLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLTGLFRM 184

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ N+  AIK +T+T+GLKYSLATGNWG Q  A  ++AGV
Sbjct: 185 LFRKLTKDVYRYLQKCVETHKEFNINMAIKTQTLTNGLKYSLATGNWGDQKKAMSSKAGV 244

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 245 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 304

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P+++FLEEWG E  EE + +     TK+FVNG W+G+ RDP  +V T
Sbjct: 305 ALMAVISVGSVSGPVIDFLEEWGLETLEENTQST--NLTKVFVNGVWLGVCRDPLNMVNT 362

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR- 298
           LR LRR  D ++EV +VRDIR +E+RIY+D GR  RPLFIVE  +L +K++ +  LQ++ 
Sbjct: 363 LRTLRRMQDFDSEVSIVRDIREREIRIYSDAGRVLRPLFIVEDHKLKLKRQHLRWLQEKW 422

Query: 299 ---ESP---------------------EDG-----------------GWHDLVAKGFIEY 317
              E P                     E+G                  W  L+  G IE 
Sbjct: 423 RIEERPYVPREERNKEEVSEGETVADEEEGRPIMRDERRVKRKKKPFTWSSLIRDGVIEL 482

Query: 318 IDTEEEETTMISMTINDLVQARL-------------HPEE-----AYADTYTHCEIHPSL 359
           +D EEEET MI MT +DL+++RL             +P         A T+THCEIHPS+
Sbjct: 483 LDAEEEETVMICMTPDDLLESRLLRRGLDPRAEADFNPAARLKPLPIAHTWTHCEIHPSM 542

Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
           ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  R DT+A +LYYPQKPL TTR
Sbjct: 543 ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLMRQDTMANILYYPQKPLATTR 602

Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
           AME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D+EK+ G
Sbjct: 603 AMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYMDQEKRSG 662

Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ 538
            ++ ++F +P R  T+ M+HG+YDKL+DDGL  PG  V G+D+IIGKT PI  D E  GQ
Sbjct: 663 AIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPPDSEELGQ 722

Query: 539 ASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
            +R +T+RD S  L+ +E G+VDQV++TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQK
Sbjct: 723 RTRGHTKRDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRSTRIPQIGDKFASRHGQK 782

Query: 598 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
           GT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPF
Sbjct: 783 GTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATIVGNEGDATPF 842

Query: 658 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           TD+TVD++S  L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKI
Sbjct: 843 TDLTVDSVSSVLREKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKI 898


>gi|56694322|gb|AAW22901.1| RNA polymerase II second largest subunit [Stangeria eriopus]
          Length = 538

 Score =  979 bits (2532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/538 (87%), Positives = 495/538 (92%), Gaps = 11/538 (2%)

Query: 188 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 247
           GSA  PILEFLEEW TENFEEISPAVIP +TKIFVNGCWVGIHRDP++LVKTLR+LRR+V
Sbjct: 1   GSAPNPILEFLEEWSTENFEEISPAVIPNSTKIFVNGCWVGIHRDPDLLVKTLRQLRRQV 60

Query: 248 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--- 304
           DVNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVE QRLLIKK DII LQQR+        
Sbjct: 61  DVNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVENQRLLIKKPDIIRLQQRDQLPPPDPE 120

Query: 305 -------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCEIH 356
                  GW  LV +GFIEY+DTEEEETTMISMTI DLV AR  P  A +   YTHCEIH
Sbjct: 121 EEXPPARGWPALVNQGFIEYVDTEEEETTMISMTIADLVNARNSPPTASSIVKYTHCEIH 180

Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
            SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLV
Sbjct: 181 XSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLV 240

Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
           TTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLF+RSYRDEEK
Sbjct: 241 TTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEK 300

Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ 536
           +MGTL+KE+FGRP+R NT+GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++QDE+ 
Sbjct: 301 RMGTLIKEEFGRPNRENTIGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESG 360

Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           GQA+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQ
Sbjct: 361 GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 420

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGTVGMTY QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP
Sbjct: 421 KGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 480

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 481 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 538


>gi|56694338|gb|AAW22909.1| RNA polymerase II second largest subunit [Podocarpus coriaceus]
          Length = 514

 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/517 (89%), Positives = 490/517 (94%), Gaps = 3/517 (0%)

Query: 189 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 248
           S+  PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1   SSPNPILEFLEEWSTENFEEISPAVIPTATKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 249 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 308
           VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+V+KQRL+IKKRDI  L Q  +PEDG WHD
Sbjct: 61  VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVKKQRLIIKKRDINELWQ--NPEDG-WHD 117

Query: 309 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 368
           L+ KGFIEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHP LILGVCASII
Sbjct: 118 LITKGFIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPXLILGVCASII 177

Query: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 428
           PFPDHNQSPRNTYQSAMGKQAMG YVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 178 PFPDHNQSPRNTYQSAMGKQAMGXYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 237

Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 488
           LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGR
Sbjct: 238 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGR 297

Query: 489 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 548
           P+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQ+E+  Q S+YTRRD S
Sbjct: 298 PNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVSQEESGNQISKYTRRDQS 357

Query: 549 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
            SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 358 TSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 417

Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
           MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 669 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           LHKCGYQMRGFETMYNGHTGR+L AMIFLGPTYYQRL
Sbjct: 478 LHKCGYQMRGFETMYNGHTGRKLNAMIFLGPTYYQRL 514


>gi|86559347|gb|ABD04081.1| RNA polymerase II second largest subunit, partial [Coniophora
           arida]
          Length = 711

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/712 (66%), Positives = 565/712 (79%), Gaps = 27/712 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST-VCTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
            Q+LL++K+ I  L Q     +  E+  W  LV  G IE +D EEEET MISMT  DL  
Sbjct: 240 NQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMISMTPEDLEN 299

Query: 338 ARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
           +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQSPR
Sbjct: 300 SRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPR 359

Query: 379 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
           NTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVA
Sbjct: 360 NTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVA 419

Query: 439 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
           I CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+
Sbjct: 420 ILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMK 479

Query: 499 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSET 556
           HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E 
Sbjct: 480 HGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEN 539

Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
           G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI
Sbjct: 540 GIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGI 599

Query: 617 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
            PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ 
Sbjct: 600 VPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQS 659

Query: 677 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
           RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 660 RGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 711


>gi|120561265|gb|ABM27017.1| RNA polymerase II second largest subunit, partial [Coelomomyces
           stegomyiae]
          Length = 862

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/714 (64%), Positives = 557/714 (78%), Gaps = 21/714 (2%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+GT   CET+K+Y+ GY+I+RLL  ALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 148 LLPHIGTTPGCETRKSYFIGYMINRLLSTALGRREVDDRDHFGKKRLDLAGPLLASLFRT 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            F+KLT+DV  Y   C++  +  NL  AI + TIT+GL+Y+LATGNWG Q     TRAGV
Sbjct: 208 FFQKLTKDVGRYFTNCLERSRPFNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGSA+ PI EFL EW TEN EEISP+ I   TK+FVNG W+GIHR+P+ LVKT
Sbjct: 328 ALMSIISVGSASEPIHEFLSEWTTENLEEISPSTIGPNTKVFVNGAWIGIHREPDSLVKT 387

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQR 298
           L+ LRR  D+++EV VV DIR  ELRIYTD GR  RPLF+V E Q+L++KK  I+ L + 
Sbjct: 388 LKTLRRATDIDSEVSVVHDIRENELRIYTDPGRICRPLFVVNENQQLVLKKEHILKLSEE 447

Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR------------------L 340
           +     GW  L+  G +EY+DTEEEET MISM+ +DL +AR                   
Sbjct: 448 DEDAIWGWEKLLINGIVEYLDTEEEETVMISMSPDDLAEARGALIFDKSLDRDRTARLKA 507

Query: 341 HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
                Y  T+THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q R
Sbjct: 508 RKPGDYCKTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQLR 567

Query: 401 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
           MDTLA +LYYPQKPLVTTR M++L FR+LPAG NAIVAIA YSGYNQEDS+IM+QS+IDR
Sbjct: 568 MDTLANILYYPQKPLVTTRNMQYLRFRELPAGQNAIVAIAAYSGYNQEDSLIMSQSAIDR 627

Query: 461 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
           G FRS+++RSY D EKK G    E+F RP R  T+ +R GSY+KL+DDG   PGTRV+G+
Sbjct: 628 GLFRSIYYRSYVDAEKKTGFTQLEEFERPTRETTLKLRQGSYEKLEDDGFVAPGTRVNGD 687

Query: 521 DVIIGKTTPISQDEAQ-GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 579
           D+IIGKT P+  D ++ G  +  T++D S  L+ SE G+VD V++TTN DG +FVK+RVR
Sbjct: 688 DIIIGKTAPLPMDHSELGTRTTQTKKDVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVR 747

Query: 580 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 639
           S R+PQIGDKF+SRHGQKGTVGMTY QEDMP+T EG+TPD+I+NPHAIPSRMTIG L+EC
Sbjct: 748 STRVPQIGDKFASRHGQKGTVGMTYRQEDMPFTAEGLTPDLIINPHAIPSRMTIGHLVEC 807

Query: 640 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
           ++GKV++  G EGDATPFTDVTV  IS  L +CGYQ RGFE MYNGHTG++L+A
Sbjct: 808 LLGKVSSLTGSEGDATPFTDVTVQQISDLLRECGYQQRGFEVMYNGHTGKKLSA 861


>gi|88601072|gb|ABD46532.1| RNA polymerase II second largest subunit, partial [Vuilleminia
           comedens]
          Length = 880

 Score =  975 bits (2521), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/734 (64%), Positives = 568/734 (77%), Gaps = 33/734 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 148 MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRDV  Y+QKCV+  K+ N+  A+K  TIT+GLKYSLATGNWG Q  +  ++AG 
Sbjct: 208 LFRKLTRDVYRYLQKCVETSKEFNISLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGX 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 328 ALMSTISVGSYSAPVIEFLEEWGLESLEENAHSQTP-CTKVFVNGVWMGVHRDPANLVKT 386

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ--- 296
           +++LRR+ D++ EV VVRDIR +ELRI TD GR  RPLFIV  + L +KK+ I  L    
Sbjct: 387 IKQLRRKDDISPEVSVVRDIRERELRIATDAGRVCRPLFIVNNKELALKKKHIDLLNVGK 446

Query: 297 -------QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL--------H 341
                    +  +D  +  LV +G IEY+D EEEET MI MT  +L +AR          
Sbjct: 447 HYVTTADGVQEEQDYKFDSLVKEGVIEYLDAEEEETVMICMTPTELDRARRIELGAKPDD 506

Query: 342 PEEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
            +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 507 EDEEYDPAARIETATLAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 566

Query: 391 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 450
           GIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS
Sbjct: 567 GIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIMCYSGYNQEDS 626

Query: 451 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 510
           VIMNQSS+DRG FRS+++RSY D EKK G    E F +P R  T+ M+HG+YDK++DDGL
Sbjct: 627 VIMNQSSVDRGLFRSMYYRSYMDVEKKSGVQELEKFMKPTRDTTLRMKHGTYDKIEDDGL 686

Query: 511 APPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNA 568
             PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G VDQVLLTTNA
Sbjct: 687 IAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTRRDVSTPLKSTEQGTVDQVLLTTNA 746

Query: 569 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
           DG +FVKVR+RS RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGITPDII+NPHAIP
Sbjct: 747 DGQKFVKVRIRSTRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGITPDIIINPHAIP 806

Query: 629 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 688
           SRMTIG L+EC++ KVA  +G+EGDATPFT++TV+++SK L   GYQ RG E MY+GHTG
Sbjct: 807 SRMTIGHLVECLLSKVATLLGQEGDATPFTELTVESVSKYLRDRGYQSRGLEIMYHGHTG 866

Query: 689 RRLTAMIFLGPTYY 702
           ++L A I+LGPTYY
Sbjct: 867 KKLNAQIYLGPTYY 880


>gi|56694332|gb|AAW22906.1| RNA polymerase II second largest subunit [Agathis australis]
          Length = 514

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/517 (88%), Positives = 492/517 (95%), Gaps = 3/517 (0%)

Query: 189 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 248
           S+A PILEFLEEW TENFEEISPAV P ATKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1   SSANPILEFLEEWSTENFEEISPAVXPTATKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 249 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 308
           VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK+DI  L  R++PE+G WH+
Sbjct: 61  VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKKDINEL--RQNPEEG-WHE 117

Query: 309 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 368
           LV KGFIEY+DTEEEETTMISMTINDLV AR++PE+AY+ TYTHCEIHPSLILGVCASII
Sbjct: 118 LVNKGFIEYVDTEEEETTMISMTINDLVNARINPEDAYSHTYTHCEIHPSLILGVCASII 177

Query: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 428
           PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQ PLVTTRAMEHLHFRQ
Sbjct: 178 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQXPLVTTRAMEHLHFRQ 237

Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 488
           LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGR
Sbjct: 238 LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGR 297

Query: 489 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 548
           P+R NT GMRHGSYDKLD+DGLAPPGTRVSGEDVIIGKTTPI+QDE  GQ SR++RRD S
Sbjct: 298 PNRENTTGMRHGSYDKLDEDGLAPPGTRVSGEDVIIGKTTPITQDEQGGQLSRFSRRDQS 357

Query: 549 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
            SLRHSE+GMVDQVLLTTN DGLRFVK+R+RSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 358 TSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 417

Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
           MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 669 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 478 LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 514


>gi|112382383|gb|ABI17423.1| RNA polymerase II second largest subunit, partial [Sympodiomycopsis
           paphiopedili]
          Length = 746

 Score =  974 bits (2519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/747 (63%), Positives = 578/747 (77%), Gaps = 46/747 (6%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDL GPLL GLFRMLFRKLTRD+  ++++CV+  ++ +L  A+K+ TIT+GL+
Sbjct: 1   DHFGKKRLDLGGPLLAGLFRMLFRKLTRDIYRHLERCVEESREFHLTTAVKSSTITNGLR 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P+  FL+E+G +N  ++S +   +AT
Sbjct: 121 WGMVCPAETPEGQACGLVKNLSLMSLISVGSPSAPLHHFLDEFGLDNLVDMSISSA-KAT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W G H +P  LV+TLR LRR+ D+ TEV VV D+R KELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWAGTHSEPSSLVETLRDLRRKDDITTEVSVVHDVREKELRLYTDSGRVLRPLF 239

Query: 279 IVEKQ--RLLIKKRDIIALQQRESP---EDGG------------WHDLVAKGFIEYIDTE 321
           IV+ +  RLL+ +  +  L   E P   +D G            W  LVA+G IEY+D +
Sbjct: 240 IVDPKSMRLLVTREHVQWLNAEEKPGTIDDLGMDADEDDKERFRWSQLVAEGVIEYLDAD 299

Query: 322 EEETTMISMTINDLVQAR-------LHPEEAYAD------------------TYTHCEIH 356
           EEET MI M+  DL ++R       L  E A  D                  T+THCEIH
Sbjct: 300 EEETVMICMSPQDLAKSRKLNRHGILTGETAGLDGLPDPSARLVSARTYEPSTWTHCEIH 359

Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
           P++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL 
Sbjct: 360 PAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLA 419

Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
           TTRAMEHL+FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D EK
Sbjct: 420 TTRAMEHLNFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYTDFEK 479

Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EA 535
           K+G  ++E+F +P R  ++ ++HG+YDK+D DGL  PGTRVSGED+IIGKT P+  D E 
Sbjct: 480 KVGFTLQEEFEKPTREXSIRLKHGTYDKIDADGLVAPGTRVSGEDIIIGKTAPLPPDSEE 539

Query: 536 QGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 594
            G  S+ +T+RD S  L+ +E+G+VDQVL++TN +G +FVKVRVRS R+PQ GDKF+SRH
Sbjct: 540 LGLRSKTHTKRDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRSTRVPQTGDKFASRH 599

Query: 595 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 654
           GQKGT+G+TY QEDMP+T+EG+TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGDA
Sbjct: 600 GQKGTIGITYRQEDMPFTIEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDA 659

Query: 655 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           TPFTD+TV+ +S  L K GYQ RG E MYNGHTGR+L A ++LGPTYYQRLKHMVDDKIH
Sbjct: 660 TPFTDLTVEAVSSILAKLGYQKRGLEVMYNGHTGRKLQAQVYLGPTYYQRLKHMVDDKIH 719

Query: 715 SRGRGPVQILTRQPAEGRSRDGGLRFG 741
           SR RGPVQILTRQP EGRSRDGGLRFG
Sbjct: 720 SRARGPVQILTRQPVEGRSRDGGLRFG 746


>gi|89274922|gb|ABD65902.1| RNA polymerase II second largest subunit, partial [Tremellodendron
           pallidum]
          Length = 716

 Score =  974 bits (2517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/720 (63%), Positives = 567/720 (78%), Gaps = 25/720 (3%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL GLFR+LFRK+++D   Y+QKC + G+  ++  AIK  TI++GLKYS
Sbjct: 1   FGKKRLDLAGPLLTGLFRLLFRKVSKDCYRYMQKCAETGRLFDVSRAIKVATISNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q +A  ++AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQQHAMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           M+CPAETPEGQACGLVKNLALM  I+VGS + P+ EFL+EWG E+ EE + A  P  TK+
Sbjct: 121 MVCPAETPEGQACGLVKNLALMACISVGSYSAPVGEFLDEWGLESLEENAQAATP-CTKV 179

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG W+G+HRDP  LV+TL++LRR  D+N EV VVRDIR KELRIYTD GR  RPLF+V
Sbjct: 180 FVNGVWMGVHRDPAALVRTLKKLRRNEDLNPEVSVVRDIREKELRIYTDSGRVCRPLFVV 239

Query: 281 EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 340
              +LLI+K  ++ + +++      W DL+  G IE +D EEEET MI M+  DL  AR 
Sbjct: 240 NDGKLLIQKEHVLKIAEKQG---YAWSDLIHDGVIELLDAEEEETVMICMSPEDLEAART 296

Query: 341 HPEEAY------------------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
             +  Y                  A  ++HCEIHPS+ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 297 QADTTYHTESAAPDPAQRVKTVIKAHAWSHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 356

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI ++N+  RMDT+A +LYYPQKPL TTRA+E+L FR+LPAG NAIVAI CY
Sbjct: 357 SAMGKQAMGISLSNFLLRMDTMANILYYPQKPLATTRALEYLKFRELPAGQNAIVAILCY 416

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSSIDRG FRS++++SY D EK  G ++ E+F +P R NT  M+HG+Y
Sbjct: 417 SGYNQEDSVIMNQSSIDRGXFRSIYYKSYMDVEKTTGQVILEEFEKPSRENTXRMKHGNY 476

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQ-DEAQGQ-ASRYTRRDHSISLRHSETGMVD 560
           DKLDDDG+  PGT V GED++IGKT P+ +  E  GQ  S +TRRD S  L+ +E+G+VD
Sbjct: 477 DKLDDDGIIAPGTNVIGEDILIGKTAPLPEGSEELGQRKSTHTRRDVSTPLKSTESGIVD 536

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
            V+++ NADG RFVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T +GITPD+
Sbjct: 537 HVIVSLNADGHRFVKIRVRSTRVPQIGDKFASRHGQKGTIGVTYRQEDMPFTADGITPDL 596

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           ++NPHAIPSRMTIG L+EC++ KVA  +G++GDATPFTD+TV+ +S  L + G+Q RG E
Sbjct: 597 VINPHAIPSRMTIGHLVECLLSKVATLLGQDGDATPFTDLTVEGVSAVLKERGFQSRGLE 656

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
            MY+GHTGR+L A ++LGPTYYQRLKHMV+DKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 657 VMYHGHTGRKLQAQVYLGPTYYQRLKHMVEDKIHSRARGPVQILTRQPVEGRSRDGGLRF 716


>gi|83415461|gb|ABC17938.1| RNA polymerase II second largest subunit, partial [Spizellomyces
           punctatus]
          Length = 721

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/721 (65%), Positives = 569/721 (78%), Gaps = 26/721 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRL+LAGPLL GLFRMLFRKLT DV  Y +K VD+  + NL  AIK  TIT GL+YSLAT
Sbjct: 2   KRLNLAGPLLSGLFRMLFRKLTNDVTRYTRKVVDSRGEFNLTMAIKGGTITRGLQYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q      RAGVSQVLNR TYASTLSHLRRLN+PIGR+GKLAKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKFMQARAGVSQVLNRYTYASTLSHLRRLNTPIGRDGKLAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM Y+TVG +  PIL+FL E+  EN EEI+P  IP+ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLSLMSYVTVGHSVAPILDFLNEFNMENLEEITPDRIPKATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+GIH DP+ LVKTLR LRR VDV  E+ +VRD+  KELR+YTD GR SRPLFIVE+ 
Sbjct: 182 GQWLGIHDDPDTLVKTLRNLRRNVDVTPELSIVRDVADKELRLYTDGGRISRPLFIVEED 241

Query: 284 RLLIKKRDIIALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDL---- 335
           + L   ++I AL+ +  P+       W+ L+ +G +EY+DTEEEET MI+M + DL    
Sbjct: 242 QTLSLTKEI-ALKTKTDPDTQMRQCDWNYLLEEGVVEYLDTEEEETVMIAMDVEDLKRVR 300

Query: 336 --------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                           ARL     YA  YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 301 LLGQGQELQVRKDDATARLRSNAVYARNYTHCEIHPSMILGICASIIPFPDHNQSPRNTY 360

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMGI++TNYQ RMDT+A +L+YPQKPL TTRAME +HFR+LPAG NA+VAIA 
Sbjct: 361 QSAMGKQAMGIFLTNYQIRMDTMANILFYPQKPLATTRAMEFMHFRELPAGQNAVVAIAV 420

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDS+IM+QSSIDRG FRS+++R Y D EKK+G +  E F +P R + + ++HG+
Sbjct: 421 YSGYNQEDSLIMSQSSIDRGLFRSMYYRVYMDTEKKVGMMASETFEKPSRDSCLRLKHGT 480

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMV 559
           Y+KLD+DGL  PG RV GED+IIGKT PI +D A+ GQ  + +T+RD S  L+ +E G++
Sbjct: 481 YEKLDNDGLIAPGVRVGGEDIIIGKTVPIKEDSAEMGQRTAAHTKRDASTPLKSTENGII 540

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           D+V++TTN  G +FVKVRVRSVR+PQ+GDKF+ RHGQKGTVG+TY QED+P++ EGI+PD
Sbjct: 541 DRVMVTTNEAGFKFVKVRVRSVRVPQMGDKFAXRHGQKGTVGITYRQEDLPFSAEGISPD 600

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMTIG L+EC++ K+A   G EGDATPFTD+TVD IS+AL + GYQ RGF
Sbjct: 601 LIINPHAIPSRMTIGHLVECLLSKLATLTGVEGDATPFTDLTVDQISRALEQFGYQKRGF 660

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
           E +YNGHTGR+L A +F GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLR
Sbjct: 661 EVLYNGHTGRKLQAQVFFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 720

Query: 740 F 740
            
Sbjct: 721 L 721


>gi|45545353|gb|AAS67524.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Usnea cornuta]
          Length = 903

 Score =  973 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/748 (62%), Positives = 577/748 (77%), Gaps = 41/748 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 156 LLPHISQVEGSETRKAFFLGYMVHRLLQCALGRREVDDRDHFGKKRLDLAGPLLASLFRG 215

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+GL+YSLATGNWG Q  AA  +AGV
Sbjct: 216 TFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGV 275

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 276 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 335

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVNG WVG+HRDP  LV T
Sbjct: 336 ALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSPNATKIFVNGVWVGVHRDPAHLVGT 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRRR  ++ EV +VRDIR +E +++TD GR  RPLF+++       +  L++ K  +
Sbjct: 396 VQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCRPLFVIDNDPRSSNRGNLVLTKDHV 455

Query: 293 IALQ-QRES-----PE-----DGGWHDLVAKGFIEYIDTEEEETTMISMTINDL------ 335
           + L+  RE+     P+     D GW  LV +G +EY+D EEEET MI MT  DL      
Sbjct: 456 LKLEMDRENWATTEPDVREETDMGWQGLVKEGVVEYVDAEEEETIMIVMTPEDLEISRQL 515

Query: 336 ----VQARLHPEE----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
               V    +PEE            A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 516 QAGYVMPEANPEELNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 575

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 576 QSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 635

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+T+ ++HG+
Sbjct: 636 YSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQFEKPMRSDTLKLKHGT 695

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR +E G+V
Sbjct: 696 YDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIV 755

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 756 DQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPD 815

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMTI  LIEC++ KV++  G EGDATPFT+VTVD++S+ L + GYQ RGF
Sbjct: 816 LIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDATPFTEVTVDSVSRLLREHGYQSRGF 875

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           E MYNGHTGR+L   +FLGPTYYQRL+H
Sbjct: 876 EVMYNGHTGRKLVTQVFLGPTYYQRLRH 903


>gi|45120578|gb|AAO64677.2| RNA polymerase II subunit RPB2, partial [Henningsomyces candidus]
          Length = 848

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/724 (64%), Positives = 571/724 (78%), Gaps = 30/724 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           M+PHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 128 MIPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM 187

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL++DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 188 LFRKLSKDVYRYLQKCVEAQKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGV 247

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 248 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 307

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ E+ + + +P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 308 ALMACISVGSLSAPVIEFLEEWGLESLEDNAHSTVP-CTKVFVNGVWMGVHRDPGNLVKT 366

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L+++K+ +  L Q  
Sbjct: 367 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKKHVKWLGQ-- 424

Query: 300 SPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---------HPEEAY 346
             +D G    W  L+  G +E +D EEEET MISMT  DL  +RL         H EE +
Sbjct: 425 GTDDQGSKFLWESLIKTGIVELLDAEEEETVMISMTPEDLETSRLQQSGADPHTHEEEEF 484

Query: 347 -----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
                      + T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++T
Sbjct: 485 DPAARLKAGSNSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLT 544

Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
           N+  RMDT+A +L+YPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 545 NFLIRMDTMANILFYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQ 604

Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
           SSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKLD+DGL  PG 
Sbjct: 605 SSIDRGLFRSIYYRSYMDLEKKSGVAQLEEFEKPTRDNTLRMKHGTYDKLDEDGLISPGV 664

Query: 516 RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
            VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G +DQVL+TTN++G +F
Sbjct: 665 GVSGEDIIIGKTAPIPPDSEELGQRTRLHTRRDVSTPLKSTENGKIDQVLITTNSEGQKF 724

Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
           VKVR+RS+RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTI
Sbjct: 725 VKVRIRSIRIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDIIINPHAIPSRMTI 784

Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
           G L+EC++ KVA  +G EGDATPFT++TV+++S  L + GYQ RG E MY+GHTGR+L A
Sbjct: 785 GHLVECLLSKVATLLGNEGDATPFTELTVESVSTYLRQKGYQSRGLEVMYHGHTGRKLQA 844

Query: 694 MIFL 697
            ++L
Sbjct: 845 QVYL 848


>gi|56694316|gb|AAW22898.1| RNA polymerase II second largest subunit [Encephalartos barteri]
          Length = 527

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/527 (88%), Positives = 490/527 (92%), Gaps = 10/527 (1%)

Query: 189 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 248
           SAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDP++LVKTLR+LRR+VD
Sbjct: 1   SAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGCWVGIHRDPDLLVKTLRQLRRQVD 60

Query: 249 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE-----SPED 303
           VNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVE QRLLIKK DI  LQQR+     SP+D
Sbjct: 61  VNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVENQRLLIKKPDIRRLQQRDQLPPPSPDD 120

Query: 304 G----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCEIHPS 358
                GWH+LV KGFIEY+DTEEEETTMISMTI+DLV AR  P  A +   YTHCEIHPS
Sbjct: 121 ENTVRGWHELVTKGFIEYVDTEEEETTMISMTISDLVNARNSPPTAASIVKYTHCEIHPS 180

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           LILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPL TT
Sbjct: 181 LILGVCXSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLXTT 240

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF+RSYRDEEK+M
Sbjct: 241 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEKRM 300

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 538
           GTLVKE+FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++QDE+ GQ
Sbjct: 301 GTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESGGQ 360

Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
           A+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKG
Sbjct: 361 AARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKG 420

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           TVGMTY QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT
Sbjct: 421 TVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 480

Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRL
Sbjct: 481 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRL 527


>gi|55583690|gb|AAV53364.1| RNA polymerase II second largest subunit [Grifola sordulenta]
          Length = 712

 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/715 (65%), Positives = 562/715 (78%), Gaps = 36/715 (5%)

Query: 39  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGL 98
           RDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GL
Sbjct: 1   RDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGL 60

Query: 99  KYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS 157
           KYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+
Sbjct: 61  KYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNT 120

Query: 158 QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 217
            WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  
Sbjct: 121 HWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLESLEENAHSSTP-C 179

Query: 218 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 277
           TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPL
Sbjct: 180 TKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISAEVSVVRDIRERELRLYTDAGRVCRPL 239

Query: 278 FIVEKQRLLIKKRDIIAL-----QQRESPED----GGWHDLVAKGFIEYIDTEEEETTMI 328
           FIVE Q+LL++K+ I  L     +Q   P+D      W  L+  G IE +D EEEET MI
Sbjct: 240 FIVENQQLLLQKKHIEWLIRSKEEQTTKPKDLRFDYKWDHLIRDGVIELLDAEEEETVMI 299

Query: 329 SMTINDLVQARLH---------------------PEEAYADTYTHCEIHPSLILGVCASI 367
            MT  DL  +RL                      P  AY  T+THCEIHPS+ILGVCASI
Sbjct: 300 CMTPEDLENSRLQAAGIDPHANDGDFDPASRLKAPTNAY--TWTHCEIHPSMILGVCASI 357

Query: 368 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 427
           IPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR
Sbjct: 358 IPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFR 417

Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
           +LPAG NAIVAI CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E F 
Sbjct: 418 ELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGVQQVEAFE 477

Query: 488 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRR 545
           +P R  T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI+ D E  GQ +R +T+R
Sbjct: 478 KPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIAPDSEELGQRTRTHTKR 537

Query: 546 DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 605
           D S  L+ +E G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY 
Sbjct: 538 DVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYR 597

Query: 606 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 665
           QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++
Sbjct: 598 QEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESV 657

Query: 666 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
           S+ L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGP
Sbjct: 658 SQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGP 712


>gi|45545341|gb|AAS67518.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Peltigera membranacea]
          Length = 895

 Score =  970 bits (2508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/748 (62%), Positives = 569/748 (76%), Gaps = 41/748 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   D  ETKKA++ GY++HR+L CALGRR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 148 LLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAGPLLAGLFRM 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLKYSLATGNWG Q  AA ++AGV
Sbjct: 208 LFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YITVG+   PI++F+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV  
Sbjct: 328 ALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVSN 387

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
           ++ LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 388 VQDLRRGHIISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDTRSMNYGNLVLTKEHI 447

Query: 293 IALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-- 339
             L++ +    G           GW  LV +G +EY+D EEEET MI MT  DL  +R  
Sbjct: 448 TRLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVEYVDAEEEETVMIVMTPGDLETSRQI 507

Query: 340 ----LHPEEA--------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                 PE A               A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 508 QLGKAVPENAEDEPNKRVNAMSHRSAQTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 567

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKP+ TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 568 QSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPMATTRSMEFLKFRELPAGQNAIVAIAC 627

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  + E F +P R++T+ ++HG+
Sbjct: 628 YSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQFEKPMRTDTLRLKHGT 687

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           Y+KLDDDG+  PG RVSGED+IIGKT PI  D E  GQ ++ + +RD S  LR +E G+V
Sbjct: 688 YEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDSEELGQRTKMHIKRDASTPLRSTENGIV 747

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD
Sbjct: 748 DQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPD 807

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFT+VTVD++SK L   GYQ RGF
Sbjct: 808 LIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTEVTVDSVSKILRAHGYQSRGF 867

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           E MYN HTG++L A +FLGPTYYQRL+H
Sbjct: 868 EVMYNAHTGQKLVAQVFLGPTYYQRLRH 895


>gi|55583686|gb|AAV53362.1| RNA polymerase II second largest subunit [Fomitopsis pinicola]
          Length = 704

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/705 (66%), Positives = 560/705 (79%), Gaps = 24/705 (3%)

Query: 54  LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANA 112
           L  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +
Sbjct: 1   LANLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGNWGDQKKS 60

Query: 113 AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 172
             ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA
Sbjct: 61  MASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQA 120

Query: 173 CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 232
           CGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRD
Sbjct: 121 CGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHRD 179

Query: 233 PEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDI 292
           P  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIV+ Q LL+ K+ I
Sbjct: 180 PANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVDDQSLLLTKQHI 239

Query: 293 IALQ--QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE--EAYAD 348
             L   + ++  D  W  LV  G +E +D EEEET MI MT +DL  +RL  +  +  AD
Sbjct: 240 QWLSNGKDDADNDFKWDSLVKSGVVELLDAEEEETVMICMTPDDLETSRLQSQGVDTTAD 299

Query: 349 ----------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 392
                           T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI
Sbjct: 300 GEFDPATRLKAPTNIHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 359

Query: 393 YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 452
           Y+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVI
Sbjct: 360 YLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVI 419

Query: 453 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 512
           MNQSSIDRG FRS+++RSY D EKK G    E F +P R  T+ M+HG+YDKL+DDGL  
Sbjct: 420 MNQSSIDRGLFRSMYYRSYMDLEKKNGIQQLEKFEKPTRETTLRMKHGTYDKLEDDGLIA 479

Query: 513 PGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADG 570
           PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNA+G
Sbjct: 480 PGTGVNGEDIIIGKTAPIPPDSEELGQRTRNHTRRDVSTPLKSTESGIIDQVLITTNAEG 539

Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
            +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHAIPSR
Sbjct: 540 QKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSR 599

Query: 631 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 690
           MTIG L+EC++ KVA  +G EGDATPFTD+TVD++S  L + GYQ RG E MY+GHTGR+
Sbjct: 600 MTIGHLVECLLSKVATLIGNEGDATPFTDLTVDSVSGFLRQRGYQSRGLEVMYHGHTGRK 659

Query: 691 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 735
           L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRD
Sbjct: 660 LQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 704


>gi|55583694|gb|AAV53366.1| RNA polymerase II second largest subunit [Marasmius alliaceus]
          Length = 705

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/706 (66%), Positives = 561/706 (79%), Gaps = 25/706 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYMQKCVETHKEFNLTAAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-TT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+R+LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIRKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIAL--QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
           IV+ Q+L+++K+ +  L   Q +   +  W  LV  G IE +D EEEET MISMT  DL 
Sbjct: 240 IVDNQQLVLQKKHVKWLLNGQNDEGSEFKWEHLVKHGIIELLDAEEEETVMISMTPEDLE 299

Query: 337 QARLH-----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
            +RL      P E                A T+THCEIHPS+ILG+CASIIPFPDHNQSP
Sbjct: 300 NSRLQQQGVDPHENDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSP 359

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 360 RNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 419

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AI CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M
Sbjct: 420 AILCYSGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRM 479

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
           +HG+YDK++DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E
Sbjct: 480 KHGTYDKIEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTE 539

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
           +G+VDQVL+TTN++G +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 540 SGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 599

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           I PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ
Sbjct: 600 IVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSMFLRQKGYQ 659

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 721
            RG E M++GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPV
Sbjct: 660 SRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPV 705


>gi|45545307|gb|AAS67501.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Candida glabrata]
          Length = 885

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/734 (62%), Positives = 568/734 (77%), Gaps = 32/734 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 151 FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 210

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 211 LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 270

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 271 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 330

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 331 SLMSCISVGADPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 390

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDII 293
           LR LRR+ D+N EV ++RDIR +EL+I+TD GR  RPLFIVE      ++ L ++K  + 
Sbjct: 391 LRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVA 450

Query: 294 ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--- 341
            L   E           ED  W  L+ +G +EYID EEEE+ +I+M   DL    +    
Sbjct: 451 KLMATEYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDI 510

Query: 342 PEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
           P+E            +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 511 PKENVDLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 570

Query: 391 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 450
           G+++TNY FRMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 571 GVFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDS 630

Query: 451 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 510
           +IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLD+DGL
Sbjct: 631 MIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGL 690

Query: 511 APPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 568
             PG RVSGED+IIGKTTPI+ DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN 
Sbjct: 691 IAPGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQ 750

Query: 569 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
           DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIP
Sbjct: 751 DGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIP 810

Query: 629 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 688
           SRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG
Sbjct: 811 SRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTG 870

Query: 689 RRLTAMIFLGPTYY 702
           ++L A IF GPTYY
Sbjct: 871 KKLMAQIFFGPTYY 884


>gi|520507|gb|AAA50224.1| RNA polymerase II, second largest subunit, partial [Caenorhabditis
           elegans]
          Length = 859

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/712 (65%), Positives = 551/712 (77%), Gaps = 12/712 (1%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPHVG  + CETKKA++ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR 
Sbjct: 154 LLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRS 213

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFR L +++R   QK ++   D  L   +K  TIT GL YSLATGNWG Q  A  +RAGV
Sbjct: 214 LFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGV 273

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNL
Sbjct: 274 SQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNL 333

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGS   PILEFLEEW  EN EE+SP+ I  ATKIFVNG WVGIHR+P+ L+ T
Sbjct: 334 ALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTT 393

Query: 240 LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
           L++LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L +KKR I  L++ 
Sbjct: 394 LKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEA 453

Query: 299 ESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
               +   W DLV  G +E ID+ EEET+MI+M   DL          Y DT+THCEIHP
Sbjct: 454 ADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSG------GYCDTHTHCEIHP 507

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           ++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVT
Sbjct: 508 AMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 567

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME+L F +LPAGINAIVAI  YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E  
Sbjct: 568 TRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEAN 627

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEA 535
           +    +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P   D+ 
Sbjct: 628 LDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDL 687

Query: 536 QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
                +Y +RD S  LR SETG+VDQV+L+ N+DG +FVK+R+RSVR+PQIGDKF+SRHG
Sbjct: 688 DASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHG 747

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+ Y QEDMP+T EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDAT
Sbjct: 748 QKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDAT 807

Query: 656 PFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           PF D V V  IS  L + GY +RG E MYNGHTG++LT  IF GPTYYQRLK
Sbjct: 808 PFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLK 859


>gi|396941918|gb|AFN89676.1| RNA polymerase II, partial [Zygoascus hellenicus]
          Length = 779

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/730 (63%), Positives = 564/730 (77%), Gaps = 37/730 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+LLCAL RR EDDRDH+G KRLDLAGPLL  LFRM
Sbjct: 50  LLPHITQEEGYETRKAFFLGYMVHRMLLCALERRGEDDRDHFGKKRLDLAGPLLANLFRM 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+QKCV+  KD  L  A+K+ TIT+GLKYSLATGNWG Q  A  TRAGV
Sbjct: 110 LFKKLTKDIYRYMQKCVETNKDFILTLAVKSSTITNGLKYSLATGNWGDQKKAMSTRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GK+A+PRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTFSSTLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + PI+ FLEEWG E  E+  P   P AT++FVNG W+G+HRDP  LV T
Sbjct: 230 SLMTCISVGSPSQPIIYFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGVHRDPAHLVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR+ D++ EV ++RDIR KE RI+TD GR  RPLF+V+       K  L++KK  +
Sbjct: 290 MRSLRRKGDISPEVSIIRDIREKEFRIFTDAGRIYRPLFLVDNDPESPNKGELVLKKEHV 349

Query: 293 IAL-QQRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL------ 340
             L Q  E   DG     GW  LV+ G IEYID EEEET MI+MT  DL  +R       
Sbjct: 350 FKLLQSEEEGNDGDAASFGWSSLVSNGVIEYIDGEEEETIMIAMTPEDLELSRQMQSGGA 409

Query: 341 ------HPEEA---------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
                  P+ A         +A T+THCEIHPS+ILG+ ASIIPFPDHNQSPRNTYQSAM
Sbjct: 410 ADIIEEEPDAARRVKPAYNPHAHTWTHCEIHPSMILGILASIIPFPDHNQSPRNTYQSAM 469

Query: 386 GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
           GKQAMG+Y+TNY  RMDT+A +LYYPQKPL TTR+ME   FR+LPAG NA+VAIACYSGY
Sbjct: 470 GKQAMGVYLTNYSVRMDTMANILYYPQKPLATTRSMEFFKFRELPAGQNAVVAIACYSGY 529

Query: 446 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
           NQEDS+IMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKL
Sbjct: 530 NQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKL 589

Query: 506 DDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVL 563
           D+DGL  PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVL
Sbjct: 590 DEDGLIAPGIRVSGEDIIIGKTAPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVL 649

Query: 564 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
           LTTN +GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+N
Sbjct: 650 LTTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRTEDMPFTAEGVVPDLIIN 709

Query: 624 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
           PHAIPSRMT+  LIEC++ KV+A  G EGDATPFTDVTVD +SK L + GYQ RGFE MY
Sbjct: 710 PHAIPSRMTVAHLIECLLSKVSALSGFEGDATPFTDVTVDAVSKLLREHGYQSRGFEVMY 769

Query: 684 NGHTGRRLTA 693
           NGHTG++L A
Sbjct: 770 NGHTGKKLMA 779


>gi|56694342|gb|AAW22911.1| RNA polymerase II second largest subunit [Sciadopitys verticillata]
          Length = 514

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/517 (88%), Positives = 487/517 (94%), Gaps = 3/517 (0%)

Query: 189 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 248
           S+A PILE LEEW TENFEEISPA IPQ+TKIFVNGCWVGIHRDP++LV+TLR+LRR++D
Sbjct: 1   SSANPILEXLEEWSTENFEEISPAAIPQSTKIFVNGCWVGIHRDPDLLVRTLRQLRRQID 60

Query: 249 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 308
           VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK DI  L  R +P DG WH+
Sbjct: 61  VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLRIKKSDINNL--RANPXDG-WHE 117

Query: 309 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 368
           LVA G+IEY+DTEEEETTMISMTIN LV AR++P +AY+ TYTHCEIHP LILGVCASII
Sbjct: 118 LVAXGYIEYVDTEEEETTMISMTINXLVNARINPHDAYSHTYTHCEIHPXLILGVCASII 177

Query: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 428
           PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 178 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 237

Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 488
           LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGR
Sbjct: 238 LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGR 297

Query: 489 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 548
           P+R NT  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+QDE+ GQA+RYTRRD S
Sbjct: 298 PNRENTQNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESGGQANRYTRRDQS 357

Query: 549 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
            SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHG KGTVGMTYTQED
Sbjct: 358 TSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGXKGTVGMTYTQED 417

Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
           MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 669 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 478 LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 514


>gi|351518439|gb|AEQ39960.1| RNA polymerase II second largest subunit [Lecophagus sp. ATCC
           56071]
          Length = 731

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/733 (63%), Positives = 563/733 (76%), Gaps = 40/733 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLF+KL +DV  Y+QKCV++ ++ BL  A+K+ TIT GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFKKLVKDVFRYLQKCVESNREFBLTLAVKSNTITMGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q   A  +AGVSQVLNR T+ASTLSHLRR N PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKPASAKAGVSQVLNRYTFASTLSHLRRTNXPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVG+   PI  F+E+   E  E   P   P ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSYITVGTPGEPISIFMEQRNMEPLESFEPQRSPNATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 281
           G W+G+HRDP  L +T+  LRR   ++ EV V+RDIR +E +I+TD GR  RPLFIV+  
Sbjct: 182 GTWIGVHRDPASLYRTVLSLRRSNVISHEVSVIRDIRDREFKIFTDAGRVCRPLFIVDND 241

Query: 282 -----KQRLLIKKRDIIALQQ-RESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTI 332
                K  L+++K  I  L++ +E   D    GW  L+  G +EY+D EEEET MISMT 
Sbjct: 242 PGSTRKGELVLQKNHIEKLEEDKEKGSDEQKYGWQGLIEDGCVEYVDAEEEETIMISMTP 301

Query: 333 NDL-----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 369
            DL                       V+A+++P    A T+THCEIHPS+ILG+CASIIP
Sbjct: 302 EDLEISRQVQAGFEVPVDDSGDMAKRVKAKVNPN---AHTWTHCEIHPSMILGICASIIP 358

Query: 370 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 429
           FPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 359 FPDHNQSPRNTYQSAMGKQAMGVFLTNFNERMDTMANILYYPQKPLATTRSMEFLKFREL 418

Query: 430 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 489
           PAG NAIV I CYSGYNQEDSVIMNQSSIDRG FRSLFFRSY + E ++G  V E F +P
Sbjct: 419 PAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYMNFETRIGMQVVEAFEKP 478

Query: 490 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDH 547
            RSNT+ ++HG+YDKLDDDGL  PG RVSG D+IIGKT P+ QD E  GQ +++ TRRD 
Sbjct: 479 TRSNTLRLKHGTYDKLDDDGLIAPGVRVSGGDIIIGKTAPMPQDSEELGQRTKFHTRRDV 538

Query: 548 SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 607
           S  LR +E G+VDQVLLTTNA+G++FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY QE
Sbjct: 539 STPLRSTENGIVDQVLLTTNAEGVKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQE 598

Query: 608 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 667
           DMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV+N+SK
Sbjct: 599 DMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVENVSK 658

Query: 668 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 727
            L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQ
Sbjct: 659 LLREHGYQSRGFEVMYNGHTGRKLIIQVFLGPTYYQRLRHMVDDKIHARARGPIQILTRQ 718

Query: 728 PAEGRSRDGGLRF 740
           P EGR+RDGGLRF
Sbjct: 719 PVEGRARDGGLRF 731


>gi|396941924|gb|AFN89679.1| RNA polymerase II, partial [Candida santjacobensis]
          Length = 777

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/729 (62%), Positives = 566/729 (77%), Gaps = 36/729 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+LLCAL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 49  LLPHITQEEGFETRKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLANLFRM 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+K+T+D+  Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 109 LFKKMTKDIYRYMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GK+A+PRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTFSSTLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + PI+ FLEEWG E  E+  P   P AT++FVNG W+G+HRDP  LV T
Sbjct: 229 SLMSCISVGSPSQPIIYFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGVHRDPAHLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR+ D++ EV ++RDIR KE RI+TD GR  RPLF+V+       K  L ++K  I
Sbjct: 289 MRSLRRKGDISPEVSIIRDIREKEFRIFTDAGRVYRPLFLVDNDEESTRKGELKLRKEHI 348

Query: 293 IALQQRE-----SPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR------- 339
             L  +E     S +D  GWH LV+ G +EYID EEEET MI+MT  DL  +R       
Sbjct: 349 YELHNQEEADPESEQDSFGWHSLVSNGVVEYIDGEEEETVMIAMTPEDLELSRQMQSGVE 408

Query: 340 ------LHP----EEAY---ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
                 + P    + AY   A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG
Sbjct: 409 MIEDDEIDPARRVKPAYNPNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMG 468

Query: 387 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
           KQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYN
Sbjct: 469 KQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYN 528

Query: 447 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
           QEDS+IMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLD
Sbjct: 529 QEDSMIMNQSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKLD 588

Query: 507 DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLL 564
           +DGL  PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLL
Sbjct: 589 EDGLIAPGIRVSGEDIIIGKTAPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVLL 648

Query: 565 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 624
           TTN +GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NP
Sbjct: 649 TTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYKHEDMPFTAEGVVPDLIINP 708

Query: 625 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 684
           HAIPSRMT+  LIEC++ KV++  G EGDATPFTDVTVD ISK L + GY  R FE MYN
Sbjct: 709 HAIPSRMTVAHLIECLLSKVSSLSGLEGDATPFTDVTVDAISKLLREHGYHSRXFEVMYN 768

Query: 685 GHTGRRLTA 693
           GHTGR+L A
Sbjct: 769 GHTGRKLVA 777


>gi|45545305|gb|AAS67500.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Baeomyces sp. SLJ472]
          Length = 894

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/748 (61%), Positives = 570/748 (76%), Gaps = 41/748 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+L   LGRR  DDRDH+G KRLDLAGPL+ GLFRM
Sbjct: 147 LLPHISQTEGSETRKAFFLGYMVHRMLQVVLGRREPDDRDHFGKKRLDLAGPLMAGLFRM 206

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KL +DV  Y++KCV++ ++ NL   +K+ T+T+GLKYSLATGNWG Q  AA ++AGV
Sbjct: 207 LFNKLVKDVYNYLKKCVESNREFNLSLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGV 266

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 267 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 326

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM YITVG+   PI++F+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV T
Sbjct: 327 SLMCYITVGTPNEPIIDFMIQRSMEVLEEYEPTRSPNATKVFVNGVWVGVHRDPAHLVST 386

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++E       K  L++ K  +
Sbjct: 387 VQSLRRRSLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIENDAKKANKGSLVLTKELV 446

Query: 293 IALQQ-RESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
             L+  ++ P D           GW  LV  G +E++D EEEET MI MT  DL  +R  
Sbjct: 447 NRLEDDKDIPSDLDPDERAARYFGWDGLVKSGAVEFLDAEEEETVMIVMTPEDLEISRQL 506

Query: 342 --------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                               P +A + T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 507 QMGYTMPSSNNVDPNSRIKVPIKASSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 566

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 567 QSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 626

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+EK++G  V E F +P RS+T+ ++HG+
Sbjct: 627 YSGYNQEDSVIMNQSSIDRGLFRSLFFRTYTDQEKRIGMSVVEQFEKPMRSDTLKLKHGT 686

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR +E G+V
Sbjct: 687 YDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHIKRDVSTPLRTTENGIV 746

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           D+VLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD
Sbjct: 747 DKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRMEDMPFTAEGIVPD 806

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+IS  L + GYQ RGF
Sbjct: 807 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSISSLLREHGYQSRGF 866

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           E MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 867 EIMYNGHTGRKLVAQVFLGPTYYQRLRH 894


>gi|45545357|gb|AAS67526.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Xanthoria polycarpa]
          Length = 893

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/751 (60%), Positives = 571/751 (76%), Gaps = 47/751 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY+IHR+L CALGRR  DDRDH+G KRLDLAGPLL GLFRM
Sbjct: 146 LLPHISQTEGSETRKAFFLGYMIHRMLQCALGRRDVDDRDHFGKKRLDLAGPLLAGLFRM 205

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+QKCV++ ++ NL   +K  T++SGLKYSLATGNWG Q  AA  +AGV
Sbjct: 206 LFQKLTKDIYKYLQKCVESNREFNLALGVKQNTLSSGLKYSLATGNWGDQKKAASAKAGV 265

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 266 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 325

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YITVG+ A PI+++L   G E+ EE  P   P ATK+FVNG W+G H DP  LV  
Sbjct: 326 ALMCYITVGTPADPIVDYLTNRGMESLEEYEPTRAPHATKVFVNGTWIGCHNDPAHLVTH 385

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK----------------- 282
           ++ +RR+  +  E  +VRDIR +E +I+TD GR  RPLF+++                  
Sbjct: 386 IQEIRRKGIIAHEASLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSENNGNLALTKDMV 445

Query: 283 QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL------ 335
           Q+L  ++  ++ +   E  E   GW  LV  G +EY+D EEEET MI+MT  DL      
Sbjct: 446 QKLEDERDMVLTMDPEERAEQVIGWEALVDSGAVEYVDAEEEETIMIAMTPEDLEISRHI 505

Query: 336 -----------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
                            V+A L+P    A T+THCEIHPS+ILG+CASIIPFPDHNQSPR
Sbjct: 506 QAGYAAPVPSEDAPNQRVKAPLNPT---AHTWTHCEIHPSMILGICASIIPFPDHNQSPR 562

Query: 379 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
           NTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVA
Sbjct: 563 NTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVA 622

Query: 439 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
           IACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK++G  V E+F +P R+ T+ ++
Sbjct: 623 IACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKRVGMTVLENFEKPLRTETLKLK 682

Query: 499 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSET 556
           HG+YDKLDDDGL  PG RVSGEDVIIGKTTPI+ D +  GQ ++ + ++D S  LR +E 
Sbjct: 683 HGTYDKLDDDGLVAPGVRVSGEDVIIGKTTPIAPDAQEMGQRTKSHIKKDASTPLRSTEN 742

Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
           G+VD+VLL+TN++GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+
Sbjct: 743 GIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGV 802

Query: 617 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
            PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT++TVD++SK L + GYQ 
Sbjct: 803 VPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEITVDSVSKLLREHGYQS 862

Query: 677 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           RGFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 863 RGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 893


>gi|55584696|gb|AAV53579.1| RNA polymerase II second largest subunit [Collybia tuberosa]
          Length = 700

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/700 (66%), Positives = 554/700 (79%), Gaps = 25/700 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q
Sbjct: 181 GVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQ 240

Query: 284 RLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +L ++K+ +  +     +  ED  W  LV  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLALQKKHVRYINNGVNDEGEDYKWEQLVKGGIIELLDAEEEETVMISMTPEDLENSRLT 300

Query: 342 PEEA-------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
              A                    + T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 QSGADPQVNDAEFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPVRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VD
Sbjct: 481 DKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN++G +FVKVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
            MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGP
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGP 700


>gi|45120564|gb|AAO64650.2| RNA polymerase II subunit RPB2, partial [Bondarzewia montana]
          Length = 867

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/720 (64%), Positives = 562/720 (78%), Gaps = 28/720 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   +  E+KKAY+FGY+IHRLLL A+ RR  DD DH+G KRLDLAGPLL  LFRM
Sbjct: 148 MLPHISMMEGSESKKAYFFGYMIHRLLLAAMERRELDDXDHFGKKRLDLAGPLLANLFRM 207

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRDV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 208 LFRKLTRDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGV 267

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GR GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 268 SQVLNRYTYASTLSHLRRCNTPLGRXGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 327

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P+++FLEEWG E+ EE + +  P  TKIFVNG W+G+HRDP  L+ T
Sbjct: 328 ALMATISVGSPSGPVIDFLEEWGLESLEENAHSATP-TTKIFVNGIWMGVHRDPANLIST 386

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ I  L Q  
Sbjct: 387 IKKLRRKDDIHPEVSVVRDIRERELRLYTDPGRVCRPLFIVEDQQLALQKKHIXWLNQGW 446

Query: 300 SPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD- 348
             +DG    W+ L+  G +E +D EEEET MI MT  DL  +RL       H  +   D 
Sbjct: 447 RDDDGTPFKWNSLIKNGVVELLDAEEEETVMICMTPEDLQNSRLQGSGVDPHANDGDFDP 506

Query: 349 -------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
                        T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+T
Sbjct: 507 AARLKAASGINTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLT 566

Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
           N+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 567 NFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQ 626

Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
           SSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT
Sbjct: 627 SSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGT 686

Query: 516 RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
            V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +F
Sbjct: 687 GVTGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKF 746

Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
           VKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI
Sbjct: 747 VKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTI 806

Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
           G L+EC++ KVA  +G EGDATPFT++TV+++S  L + GYQ RG E MY+GHTGR+L A
Sbjct: 807 GHLVECLLSKVATLIGNEGDATPFTELTVESVSAFLRQQGYQSRGLEVMYHGHTGRKLQA 866


>gi|55273985|gb|AAV48863.1| RNA polymerase II second largest subunit [Coprinus comatus]
          Length = 699

 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/700 (66%), Positives = 555/700 (79%), Gaps = 25/700 (3%)

Query: 54  LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANA 112
           L  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +
Sbjct: 1   LANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKS 60

Query: 113 AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 172
             ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA
Sbjct: 61  MSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQA 120

Query: 173 CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 232
           CGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRD
Sbjct: 121 CGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRD 179

Query: 233 PEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDI 292
           P  LVKT+++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL++K+ I
Sbjct: 180 PANLVKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQKKHI 239

Query: 293 IALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPE 343
             L     +  E+  W  L+  G IE +D EEEET MISMT  DL  +RL       H  
Sbjct: 240 RWLNNGYNDEGEEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDTHAN 299

Query: 344 EA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
           +             +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 300 DGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 359

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           IY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSV
Sbjct: 360 IYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSV 419

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL 
Sbjct: 420 IMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLEDDGLI 479

Query: 512 PPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNAD 569
            PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++
Sbjct: 480 APGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSE 539

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPS
Sbjct: 540 GQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPS 599

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR
Sbjct: 600 RMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEIMYHGHTGR 659

Query: 690 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 729
           +L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP 
Sbjct: 660 KLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPV 699


>gi|396941791|gb|AFN89613.1| RNA polymerase II, partial [Wickerhamomyces canadensis]
          Length = 780

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/731 (62%), Positives = 563/731 (77%), Gaps = 38/731 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHITQREGYESRKAFFLGYMVNRLLLCALERKGQDDRDHFGKKRLDLAGPLLANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  Y+Q+ V+   D NL+ A+KA TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFKKLTRDIYRYMQRSVETSTDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P   P+ATKIFVNG W GIHR P  LV++
Sbjct: 230 SLMSCISVGTTSDPILLFLEEWGMEQLEDFVPHESPEATKIFVNGVWHGIHRQPAKLVES 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
           LR +RRR +++ E+ ++RDIR +ELR++TD GR  RPLF+V+       + L + K  I 
Sbjct: 290 LREIRRRGEISPEISIIRDIRERELRVFTDAGRVYRPLFVVKDNEETGAKELALDKTHIQ 349

Query: 294 ALQQRES-----------------PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
            L + E+                 PED  W  L++   +EYID EEEETT+I+M+  DL 
Sbjct: 350 KLAETEARQQELAEGEDEAYNEDKPEDFTWSSLLSSNVVEYIDAEEEETTLIAMSPEDLD 409

Query: 337 QA-----------RLHP-EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
            A           R+ P     A TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSA
Sbjct: 410 SASYDADASNPNQRIKPVYNKSAQTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSA 469

Query: 385 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
           MGKQAMG+Y+TNY FRMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSG
Sbjct: 470 MGKQAMGVYLTNYNFRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSG 529

Query: 445 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
           YNQEDS+IMNQSSIDRG FRSLFFRSY D+EK++G  V E+F +P+RSNT+ ++HG+Y+K
Sbjct: 530 YNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKRVGMSVVEEFEKPNRSNTLRLKHGTYEK 589

Query: 505 LDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQV 562
           LDDDGL  PG RVSGED+IIGKTTPI  D E  GQ + Y T+RD S  LR +E G+VDQV
Sbjct: 590 LDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTVYHTKRDASTPLRSTENGIVDQV 649

Query: 563 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 622
           L+TTN +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+
Sbjct: 650 LITTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRREDMPFTSEGIVPDLII 709

Query: 623 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 682
           NPHAIPSRMT+  LIEC++ KV+A  G EGDA+PFTDVTVD IS  L    YQ RGFE M
Sbjct: 710 NPHAIPSRMTVAHLIECLLSKVSAITGFEGDASPFTDVTVDLISNLLRDKNYQSRGFEVM 769

Query: 683 YNGHTGRRLTA 693
           YNGHTG++L A
Sbjct: 770 YNGHTGKKLMA 780


>gi|396941819|gb|AFN89627.1| RNA polymerase II, partial [Zygotorulaspora mrakii]
          Length = 771

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/724 (63%), Positives = 559/724 (77%), Gaps = 31/724 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 48  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 107

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 108 LFRKLTKDIFRYMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 167

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 168 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 227

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 228 SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 287

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
           LR LRR+ D+N EV +VRDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 288 LRTLRRKGDINPEVSMVRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIS 347

Query: 294 ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE- 343
            L   E           ED  W  L+ +G +EYID EEEET +ISM   DL   +  PE 
Sbjct: 348 KLMATEYQDIEGGFEDSEDYTWSSLLNEGLVEYIDAEEEETILISMQPEDLEPIQKTPEF 407

Query: 344 ------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                         +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 408 DEEDDLAKRIRATQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 467

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 468 VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 527

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 528 IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 587

Query: 512 PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN D
Sbjct: 588 APGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQD 647

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 648 GLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTSEGIVPDLIINPHAIPS 707

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 708 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 767

Query: 690 RLTA 693
           +L A
Sbjct: 768 KLMA 771


>gi|156627827|gb|ABU88901.1| RNA polymerase II second largest subunit [Phymatotrichopsis
           omnivora]
 gi|156627829|gb|ABU88902.1| RNA polymerase II second largest subunit [Phymatotrichopsis
           omnivora]
 gi|156627831|gb|ABU88903.1| RNA polymerase II second largest subunit [Phymatotrichopsis
           omnivora]
 gi|156627833|gb|ABU88904.1| RNA polymerase II second largest subunit [Phymatotrichopsis
           omnivora]
          Length = 884

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/735 (62%), Positives = 570/735 (77%), Gaps = 31/735 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+L CAL RR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 150 LLPHISQKEGSETRKAFFLGYMVHRMLQCALERREVDDRDHFGKKRLDLAGPLLAQLFRN 209

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           L+++LT++V  Y++KCV+  K+ NL  A+K+ TIT+GLKYSLATGNW  Q  AA ++AGV
Sbjct: 210 LWKQLTKEVYKYLEKCVEGSKEFNLNLAVKSNTITTGLKYSLATGNWASQKKAASSKAGV 269

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 270 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 329

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YITVG+   PI++F+ +   E  EE  P   P ATKIFVNG WVGIHRDP  LV+T
Sbjct: 330 ALMSYITVGTPGDPIVDFMAQRNMEFLEEYEPQRSPNATKIFVNGVWVGIHRDPLQLVRT 389

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +++LRR   ++ EV V+RDIR +E +I+TD GR  RPLF ++       + +L+++K  I
Sbjct: 390 VQKLRRTGVISHEVSVIRDIRDREFKIFTDAGRVCRPLFAIDNDPTSERRGQLVLQKEHI 449

Query: 293 IALQQRES-PEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLH--- 341
             L+   S PE+   GW  L++ G +EY+D EEEET MI MT  DL     VQA      
Sbjct: 450 ERLEDDHSLPEEERFGWKGLLSVGAVEYLDAEEEETVMIVMTPEDLELSRQVQAGYEVAE 509

Query: 342 ----------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                     P      T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 510 ETDMGKRVKAPINPATHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 569

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSV
Sbjct: 570 VFLTNFAERMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSV 629

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLF+RSY D+EK++G  + E+F +P RSNT+ ++HG+YDKLD+DGL 
Sbjct: 630 IMNQSSIDRGLFRSLFYRSYMDQEKRIGMQIVEEFEKPMRSNTLKLKHGTYDKLDEDGLV 689

Query: 512 PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGED+IIGKT PI+ D +  GQ  +Y T+RD S  LR +E G+VDQV+LTTNA+
Sbjct: 690 APGVRVSGEDIIIGKTAPIAPDLDEMGQRQKYHTKRDVSTPLRSTENGIVDQVMLTTNAE 749

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPS
Sbjct: 750 GLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRMEDMPFTCEGIVPDLIINPHAIPS 809

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMTI  LIEC + KV++  G EGDATPFTDVTVD++S+ L + GYQ RGFE MYNGHTGR
Sbjct: 810 RMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSQLLRQEGYQSRGFEVMYNGHTGR 869

Query: 690 RLTAMIFLGPTYYQR 704
           +L A +FLGPTYYQR
Sbjct: 870 KLVAQVFLGPTYYQR 884


>gi|83415447|gb|ABC17931.1| RNA polymerase II second largest subunit precursor, partial
           [Coelomomyces stegomyiae]
          Length = 1080

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/691 (65%), Positives = 542/691 (78%), Gaps = 21/691 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFR  F+KLT+DV  Y   C++  +  NL  AI + TIT+GL+Y+LAT
Sbjct: 2   KRLDLAGPLLASLFRTFFQKLTKDVGRYFTNCLERSRPFNLNMAINSNTITNGLRYALAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q     TRAGVSQVLNR T+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGSA+ PI EFL EW TEN EEISP+ I   TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSIISVGSASEPIHEFLSEWTTENLEEISPSTIGPNTKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EK 282
           G W+GIHR+P+ LVKTL+ LRR  D+++EV VV DIR  ELRIYTD GR  RPLF+V E 
Sbjct: 182 GAWIGIHREPDSLVKTLKTLRRATDIDSEVSVVHDIRENELRIYTDPGRICRPLFVVNEN 241

Query: 283 QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--- 339
           Q+L++KK  I+ L + +     GW  L+  G +EY+DTEEEET MISM+ +DL +AR   
Sbjct: 242 QQLVLKKEHILKLSEEDEDAIWGWEKLLINGIVEYLDTEEEETVMISMSPDDLAEARGAL 301

Query: 340 ---------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
                                Y  T+THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 302 IFDKSLDRDRTARLKARKPGDYCKTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSA 361

Query: 385 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
           MGKQAMG+Y+TN+Q RMDTLA +LYYPQKPLVTTR M++L FR+LPAG NAIVAIA YSG
Sbjct: 362 MGKQAMGVYLTNFQLRMDTLANILYYPQKPLVTTRNMQYLRFRELPAGQNAIVAIAAYSG 421

Query: 445 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
           YNQEDS+IM+QS+IDRG FRS+++RSY D EKK G    E+F RP R  T+ +R GSY+K
Sbjct: 422 YNQEDSLIMSQSAIDRGLFRSIYYRSYVDAEKKTGFTQLEEFERPTRETTLKLRQGSYEK 481

Query: 505 LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRYTRRDHSISLRHSETGMVDQVL 563
           L+DDG   PGTRV+G+D+IIGKT P+  D ++ G  +  T++D S  L+ SE G+VD V+
Sbjct: 482 LEDDGFVAPGTRVNGDDIIIGKTAPLPMDHSELGTRTTQTKKDVSTGLKSSENGIVDHVM 541

Query: 564 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
           +TTN DG +FVK+RVRS R+PQIGDKF+SRHGQKGTVGMTY QEDMP+T EG+TPD+I+N
Sbjct: 542 VTTNGDGYKFVKIRVRSTRVPQIGDKFASRHGQKGTVGMTYRQEDMPFTAEGLTPDLIIN 601

Query: 624 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
           PHAIPSRMTIG L+EC++GKV++  G EGDATPFTDVTV  IS  L +CGYQ RGFE MY
Sbjct: 602 PHAIPSRMTIGHLVECLLGKVSSLTGSEGDATPFTDVTVQQISDLLRECGYQQRGFEVMY 661

Query: 684 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           NGHTG++L+A IFLGPTYYQRLKHMVDDKIH
Sbjct: 662 NGHTGKKLSAQIFLGPTYYQRLKHMVDDKIH 692



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/27 (85%), Positives = 25/27 (92%)

Query: 714  HSRGRGPVQILTRQPAEGRSRDGGLRF 740
            +SR RGP+QILTRQP EGRSRDGGLRF
Sbjct: 1054 NSRSRGPLQILTRQPVEGRSRDGGLRF 1080


>gi|45545311|gb|AAS67503.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Candida parapsilosis]
          Length = 892

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/743 (62%), Positives = 566/743 (76%), Gaps = 43/743 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 152 LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 211

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 212 LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 271

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 272 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 331

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PI  FL +WG E  E+  P+  P AT++FVNG WVG+HR+P  LV  
Sbjct: 332 SLMSCISVGTPSEPISSFLRDWGLEPLEDYVPSNSPDATRVFVNGVWVGVHREPASLVDY 391

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR  D++ EV ++RDIR KEL+I+TD GR  RPLFIV+       K  L +KK  +
Sbjct: 392 MRDLRRNGDISPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLKKEHV 451

Query: 293 IALQQRESPEDGG-------WHDLVAKGFIEYIDTEEEETTMISMTINDL---------- 335
             L   ES  DG        W  LV +G +EY+D EEEET MI+MT +DL          
Sbjct: 452 NRLL--ESSYDGDEDEPSYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTET 509

Query: 336 VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 510 QQQDLQMEEQELDPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 569

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIAC
Sbjct: 570 QSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIAC 629

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDS+IMNQSSIDRGFFRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 630 YSGYNQEDSMIMNQSSIDRGFFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGT 689

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
           Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+V
Sbjct: 690 YEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIV 749

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD
Sbjct: 750 DQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPD 809

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGF
Sbjct: 810 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGF 869

Query: 680 ETMYNGHTGRRLTAMIFLGPTYY 702
           E MYNGHTG++L A +F GPTYY
Sbjct: 870 EVMYNGHTGKKLMAQVFFGPTYY 892


>gi|396941926|gb|AFN89680.1| RNA polymerase II, partial [Candida tepae]
          Length = 773

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/722 (62%), Positives = 560/722 (77%), Gaps = 31/722 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+LLCAL RR +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  LLPHITQEEGFETRKAFFLGYMVHRMLLCALERREQDDRDHFGKKRLDLAGPLLANLFRL 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+QKCV+  KD NL  A+K+ T+T+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTKDIYRYMQKCVETNKDFNLTLAVKSNTLTNGLKYSLATGNWGDQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSH RR N+PIGR+GK+A+PRQLHN+ WG +CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTFSSTLSHXRRTNTPIGRDGKIARPRQLHNTHWGFVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + PI+ FLEEWG E  E+  P     +T++FVNG W+G+HRDP  LV T
Sbjct: 230 SLMSCISVGSPSQPIVYFLEEWGMEPLEDFVPHASTDSTRVFVNGVWIGVHRDPGHLVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR+ D++ EV ++RDIR KE RI+TD GR  RPLF+V+       K  L ++K  I
Sbjct: 290 MRSLRRKGDISPEVSIIRDIREKEFRIFTDAGRVYRPLFVVDNDEESSRKGELKLRKEHI 349

Query: 293 IALQQRESPE---DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL--------- 340
             L  +E  E     GW  L++ G +EYID EEEET MI+MT  DL  +R          
Sbjct: 350 YELLTKEETEGEDSAGWSSLISNGIVEYIDGEEEETVMIAMTPEDLELSRQMQSGVEIIS 409

Query: 341 HPEEA---------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
            P+ A         +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 410 EPDPAQRVKPSYNPHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 469

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+
Sbjct: 470 VFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSM 529

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLD+DGL 
Sbjct: 530 IMNQSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKLDEDGLI 589

Query: 512 PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E GMVDQVLLTTN +
Sbjct: 590 APGIRVSGEDIIIGKTAPIPPDIEELGQRTKYHTKRDASTPLRSTENGMVDQVLLTTNQE 649

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+NPHAIPS
Sbjct: 650 GLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPS 709

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMT+  LIEC++ KV++  G EGDATPFTDVTVD ISK L K GY  RGFE MYNGHTG+
Sbjct: 710 RMTVAHLIECLLSKVSSLSGLEGDATPFTDVTVDAISKLLRKHGYHSRGFEVMYNGHTGK 769

Query: 690 RL 691
           +L
Sbjct: 770 KL 771


>gi|45545351|gb|AAS67523.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Thamnolia vermicularis]
          Length = 893

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/750 (61%), Positives = 572/750 (76%), Gaps = 46/750 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+L  ALGRR  DDRDH+G KRLDLAGPL+ GLFRM
Sbjct: 147 LLPHISQVEGSETRKAFFLGYMVHRMLQVALGRRDPDDRDHFGKKRLDLAGPLMAGLFRM 206

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GLKYSLATGNWG Q  AA ++AGV
Sbjct: 207 LFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGV 266

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 267 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 326

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  +TVGS + PI++F+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV T
Sbjct: 327 ALMCCVTVGSPSEPIIDFMVQRNMEILEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVST 386

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+++       K  L++ K  +
Sbjct: 387 VMSLRRRGLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVIDNDAKSPNKGSLVLTKELV 446

Query: 293 IALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEETTMISMTINDL------ 335
             L+  ++ P D           GW  L+ +G +EY+D EEEET MI MT  DL      
Sbjct: 447 NRLEDDKDLPADMDPDEKAAKTMGWDGLIKRGVVEYLDAEEEETVMIVMTPEDLDISRQL 506

Query: 336 ----------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
                           V+A L+P    A T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 507 QAGYQMPETTDDPNKRVKAPLNPT---AHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 563

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+++TN+  RMDT+  +LYYPQKPL TTR+ME L FR+LPAG NAIVAI
Sbjct: 564 TYQSAMGKQAMGVFLTNFDERMDTMTNILYYPQKPLATTRSMEFLKFRELPAGQNAIVAI 623

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           ACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D+EK++G  V E F +P RS+T+ ++H
Sbjct: 624 ACYSGYNQEDSVIMNQSSIDRGLFRSLFYRVYTDQEKRVGMSVVEMFEKPMRSDTLKLKH 683

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR +E G
Sbjct: 684 GTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHIKRDVSTPLRSTENG 743

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VD+VLLTTN +GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 744 LVDKVLLTTNHEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIV 803

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++S+ L + GYQ R
Sbjct: 804 PDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEVTVDSVSRLLREHGYQSR 863

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           GFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 864 GFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 893


>gi|396941897|gb|AFN89666.1| RNA polymerase II, partial [Yamadazyma mexicana]
          Length = 783

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/735 (62%), Positives = 561/735 (76%), Gaps = 42/735 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +   T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFATRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS++ PIL FLEEWG E  E+ SP+  P +T++FVNG WVG HRDP  LV T
Sbjct: 229 SLMSCISVGSSSEPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPSSLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR+ D++ EV ++RDIR KE +I+TD GR  RPLF+V+       K  L++KK  I
Sbjct: 289 IRSLRRKGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDNQYSETKGELVLKKEHI 348

Query: 293 IALQQRESPEDG--------GWHDLVAKGFIEYIDTEEEETTMISMTINDLV-------- 336
             L   E  + G        GW  LV  G IEY+D EEEET MI+MT  DLV        
Sbjct: 349 KKLTDSEYDDYGYDDEQQSYGWSSLVNDGIIEYVDAEEEETIMIAMTPEDLVASKSALTE 408

Query: 337 --QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
             Q  L  EE   D              TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 409 SEQKNLQMEEQERDPAKRIKPTYSGSLHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNT 468

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIA
Sbjct: 469 YQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIA 528

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG
Sbjct: 529 CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHG 588

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
           +Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 589 TYEKLDDDGLITPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGI 648

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI P
Sbjct: 649 VDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGIVP 708

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RG
Sbjct: 709 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEEVSKLLREHGYQSRG 768

Query: 679 FETMYNGHTGRRLTA 693
           FE MYNGHTG++L A
Sbjct: 769 FEVMYNGHTGKKLMA 783


>gi|56694318|gb|AAW22899.1| RNA polymerase II second largest subunit [Macrozamia moorei]
          Length = 523

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/522 (88%), Positives = 485/522 (92%), Gaps = 10/522 (1%)

Query: 203 TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 262
           TENFEEIS AVIP ATKIFVNGCWVGIHRDP++LVKTLR+LRR+VDVNTEVGVVRDIRL 
Sbjct: 2   TENFEEISXAVIPNATKIFVNGCWVGIHRDPDLLVKTLRQLRRQVDVNTEVGVVRDIRLS 61

Query: 263 ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE-----SPEDG----GWHDLVAKG 313
           ELR+YTDYGRCSRPLFIVE QRLLIKK DI  LQQR+     SP+D     GWH+LV KG
Sbjct: 62  ELRLYTDYGRCSRPLFIVENQRLLIKKPDIRRLQQRDQLPPPSPDDENTVRGWHELVTKG 121

Query: 314 FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCEIHPSLILGVCASIIPFPD 372
           FIEY+DTEEEETTMISMTI+DLV AR  P  A +   YTHCEIHPSLILGVCASIIPFPD
Sbjct: 122 FIEYVDTEEEETTMISMTISDLVNARNSPPTAASIVKYTHCEIHPSLILGVCASIIPFPD 181

Query: 373 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 432
           HNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
Sbjct: 182 HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 241

Query: 433 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 492
           INAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLF+RSYRDEEK+MGTLVKE+FGRP+R 
Sbjct: 242 INAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEKRMGTLVKEEFGRPNRE 301

Query: 493 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLR 552
           NT GMRHGSYDKLDDDGLAPPGTRVSGE VIIGKTTP++QDE+ GQA+RYT+RD S SLR
Sbjct: 302 NTTGMRHGSYDKLDDDGLAPPGTRVSGEXVIIGKTTPVTQDESGGQAARYTKRDQSTSLR 361

Query: 553 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
           HSE+GMVDQVLLTTNADGLRFVKVR+ SVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWT
Sbjct: 362 HSESGMVDQVLLTTNADGLRFVKVRMXSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWT 421

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
           VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC
Sbjct: 422 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 481

Query: 673 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           GYQM GFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 482 GYQMXGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 523


>gi|396941961|gb|AFN89697.1| RNA polymerase II, partial [Candida caseinolytica]
          Length = 775

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/727 (62%), Positives = 558/727 (76%), Gaps = 34/727 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY+IHR+LLCALGR   DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 49  LLPHITQEEGYETRKAFFLGYMIHRMLLCALGRAEVDDRDHFGKKRLDLAGPLLANLFRM 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRDV  Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 109 LFKKLTRDVYRYMQKCVETNKDFNLMLAVKSTTITNGLKYSLATGNWGDQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLICPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + PI+ FLEEWG E  E+  P   P +T++FVNG W+G HRDP  LV+T
Sbjct: 229 SLMSCISVGSPSQPIVLFLEEWGMEPLEDYVPHASPNSTRVFVNGVWIGTHRDPAQLVET 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ E  ++RDIR +E +I+TD GR  RPLFIV+       K  ++++K  +
Sbjct: 289 MRTLRRRGDISPEASIIRDIREREFKIFTDAGRVYRPLFIVDTDENSPTKGDIMLRKEHV 348

Query: 293 IALQQRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL------------ 335
             L   E   D      GW  LV  G +EYID EEEET MI+MT  DL            
Sbjct: 349 QKLLNAEEEIDDEGNPYGWSSLVRSGVVEYIDAEEEETIMIAMTPEDLQLSKQAQAGDAP 408

Query: 336 VQARLHPEE-------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
           ++  L P +        +A T++HCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 409 IEEELDPSQRVRPAFNPHARTWSHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQ 468

Query: 389 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
           AMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQE
Sbjct: 469 AMGVFLTNYSTRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQE 528

Query: 449 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
           DSV+MNQ SIDRG FRSLFFRSY D+E+++G  V E+F RP R   +G++HG+YDKLD D
Sbjct: 529 DSVVMNQGSIDRGLFRSLFFRSYMDQERRIGMSVVEEFERPTRQTALGLKHGTYDKLDAD 588

Query: 509 GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
           GL   G RVSGED+IIGKTTPIS D E  GQ +++ T+RD S  LR +E+G+VDQVLLTT
Sbjct: 589 GLISAGVRVSGEDIIIGKTTPISPDSEELGQRTKFHTKRDASTPLRSTESGLVDQVLLTT 648

Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           N +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PDII+NPHA
Sbjct: 649 NQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPFTAEGMVPDIIINPHA 708

Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
           IPSRMT+  LIEC++ KV++  G EGDATPFTDVTVD +S  L + GYQ RGFE MYNGH
Sbjct: 709 IPSRMTVAHLIECLLSKVSSLSGLEGDATPFTDVTVDAVSTLLREHGYQSRGFEVMYNGH 768

Query: 687 TGRRLTA 693
           TG++L A
Sbjct: 769 TGKKLMA 775


>gi|300122083|emb|CBK22657.2| unnamed protein product [Blastocystis hominis]
          Length = 1194

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/863 (56%), Positives = 614/863 (71%), Gaps = 55/863 (6%)

Query: 1    MLPHVGT--GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 58
            MLPH+    G     KKA+Y GY++H+LL C+L R  ++DRDH  NKR+DLAGP++G LF
Sbjct: 309  MLPHINVDFGPNSNCKKAFYLGYMVHKLLNCSLNRNEQEDRDHISNKRMDLAGPMIGRLF 368

Query: 59   RMLFRKLTRDVRAYVQKCVDNGKD---VNLQFAIKAKTITSGLKYSLATGNWG-QANAAG 114
              L  + T+++R++++K V++ K    +N+    K+  I+ GLKYS ATGNWG ++    
Sbjct: 369  HGLLYRFTKELRSHMKKVVNSRKGSSFINIMTNAKSSIISDGLKYSFATGNWGDRSRGMP 428

Query: 115  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 174
            T  GVSQ LNRLTYAS+LS LRRL SPI    K+ KPR LH++QWGMMCPAETPEGQ+CG
Sbjct: 429  TTTGVSQSLNRLTYASSLSSLRRLKSPIDTTSKVTKPRLLHSTQWGMMCPAETPEGQSCG 488

Query: 175  LVKNLALMVYITVGSAA----------YPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
            +VKNLALM YI+VG+              I   LE  G E  E I+ ++IP+ TK+FVNG
Sbjct: 489  IVKNLALMCYISVGNPVGAAGARDWQVEKIYRLLENNGVEELETIASSLIPKTTKVFVNG 548

Query: 225  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--K 282
             WVGIHRDP+++      L  R D +T+V +V DI+ +ELRI  D GRC RPL++V+   
Sbjct: 549  VWVGIHRDPKVI------LDHREDFDTDVSMVYDIQERELRITADAGRCCRPLYVVDPIT 602

Query: 283  QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 342
            QR+ I+K  +  LQ    PE   + DLV    IEY+  EEEE  MI M   DL   R   
Sbjct: 603  QRVKIRKYHLRNLQ----PETM-FSDLVLNRLIEYVSAEEEEYCMIGM---DLKTMRACV 654

Query: 343  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 402
            E     TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+YV+NY+ RMD
Sbjct: 655  ENRSCTTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYVSNYRQRMD 714

Query: 403  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 462
            T A+VL YPQ+PLVTT+AM +L F++LPAG N +VAI CYSGYNQEDS+I+NQS+I+RG 
Sbjct: 715  TTAHVLSYPQQPLVTTKAMTYLRFKELPAGCNCVVAICCYSGYNQEDSLILNQSAIERGL 774

Query: 463  FRSLFFRSYRDEEKKMGTLV-----------KEDFGRP-DRSNTMGMRHGSYDKLDDDGL 510
            FRS+F+R+Y+D E +  T              E F RP     +M    G Y  LD+DGL
Sbjct: 775  FRSIFYRTYQDTEVRRDTTTSSLSLSNPSMGNERFCRPLSEQCSMTKDEGLYRNLDEDGL 834

Query: 511  APPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG 570
              PG+RV+G+ ++IGK TP  +    G   R   +D+S  LRH+E+G+VD+V+LTTN  G
Sbjct: 835  VKPGSRVTGDSILIGKATPTGELNVHG---RSNLKDNSTGLRHAESGIVDEVMLTTNEKG 891

Query: 571  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
             RFVKV+VRSVR+PQIGDK SSRHGQKGT+GMTY QEDMP+T  GI PDII+NPHAIPSR
Sbjct: 892  FRFVKVKVRSVRVPQIGDKLSSRHGQKGTIGMTYRQEDMPFTENGIVPDIIMNPHAIPSR 951

Query: 631  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 690
            MTIGQLIEC++GKVAA   +EGD T F+DVTV++IS  LH  GYQ RG+E +YNGHTGRR
Sbjct: 952  MTIGQLIECLLGKVAALQAREGDGTAFSDVTVEDISNKLHNEGYQKRGYEVLYNGHTGRR 1011

Query: 691  LTAMIFLGPTYYQRLKHMVDDKIHSRGRG----PVQIL--TRQPAEGRSRDGGLRFGEME 744
            + A +F+GPT+YQRLKH+VDDKIH+R RG    P +IL  TRQP EGRSRDGGLR GEME
Sbjct: 1012 MEARVFMGPTFYQRLKHLVDDKIHARARGMNTKPGRILHPTRQPLEGRSRDGGLRMGEME 1071

Query: 745  RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVH 804
            RD +IA+GAS  ++ER F  SDAY V +C+ CGL  I  +  N++ C+ C NKT   +V 
Sbjct: 1072 RDVLIAYGASQLVRERFFYSSDAYVVTICDDCGL--ICTMIDNTYICKNCDNKTRFSKVE 1129

Query: 805  IPYACKLLFQELMAMAIAPRMLT 827
            IPYACKLLFQELM+M IAPR+ T
Sbjct: 1130 IPYACKLLFQELMSMNIAPRIHT 1152


>gi|55273989|gb|AAV48865.1| RNA polymerase II second largest subunit [Amanita brunnescens]
          Length = 694

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/695 (65%), Positives = 550/695 (79%), Gaps = 25/695 (3%)

Query: 58  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 116
           FRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++
Sbjct: 1   FRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSK 60

Query: 117 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 176
           AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLV
Sbjct: 61  AGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLV 120

Query: 177 KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 236
           KNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVNG W+G+HRDP  L
Sbjct: 121 KNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSAVP-CTKVFVNGVWMGVHRDPANL 179

Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
           VKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ +  L 
Sbjct: 180 VKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHVRWLS 239

Query: 297 Q--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA--------- 345
               E  ED  W  LV  G +E +D +EEET MISMT  DL  +RL              
Sbjct: 240 NGFNEESEDFKWEHLVKGGIVELLDADEEETVMISMTPEDLENSRLQQSGVDPNVNDGEF 299

Query: 346 ----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
                      A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+T
Sbjct: 300 DPAARLKAGISAHAWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLT 359

Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
           N+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 360 NFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQ 419

Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
           SSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT
Sbjct: 420 SSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGT 479

Query: 516 RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
            V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +F
Sbjct: 480 NVTGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKF 539

Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
           VKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI
Sbjct: 540 VKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTI 599

Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
           G L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A
Sbjct: 600 GHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQA 659

Query: 694 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
            I+LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 660 QIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 694


>gi|55274001|gb|AAV48871.1| RNA polymerase II second largest subunit [Clitocybe subditopoda]
          Length = 693

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/694 (66%), Positives = 552/694 (79%), Gaps = 24/694 (3%)

Query: 58  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 116
           FRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++
Sbjct: 1   FRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSK 60

Query: 117 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 176
           AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLV
Sbjct: 61  AGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLV 120

Query: 177 KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 236
           KNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L
Sbjct: 121 KNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANL 179

Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
           VKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L ++K+ I  L 
Sbjct: 180 VKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLN 239

Query: 297 Q--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL------HPEEAYAD 348
               +  E+  W  LV  G IE +D EEEET MISMT  DL  +RL      H  E   D
Sbjct: 240 NGYNDEGEEYKWEQLVKGGIIELLDAEEEETVMISMTPEDLENSRLNQSGAPHTHEPDFD 299

Query: 349 ------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
                       T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN
Sbjct: 300 PAARLKPGLNSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTN 359

Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
           +  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 360 FLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 419

Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
           SIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT 
Sbjct: 420 SIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPVRDNTLRMKHGTYDKLEDDGLIAPGTG 479

Query: 517 VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
           V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +FV
Sbjct: 480 VAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFV 539

Query: 575 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
           KVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG
Sbjct: 540 KVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIG 599

Query: 635 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
            L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A 
Sbjct: 600 HLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQ 659

Query: 695 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
           ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 660 VYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 693


>gi|396941825|gb|AFN89630.1| RNA polymerase II, partial [Torulaspora delbrueckii]
          Length = 773

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/724 (63%), Positives = 559/724 (77%), Gaps = 31/724 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 50  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTKDIFRYMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 230 SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
           LR LRR+ D+N EV +VRDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 290 LRTLRRKGDINPEVSMVRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIG 349

Query: 294 ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHP 342
            L   E           ED  W  L+ +G +EYID EEEET +ISM   DL  VQ     
Sbjct: 350 KLMATEYQDIEGGFEDSEDYTWSSLLNEGLVEYIDAEEEETILISMQPEDLEPVQEAHEF 409

Query: 343 EE-----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
            E            +A T+THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 410 NEDDDLAKRIRATQHATTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMG 469

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 470 VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 529

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 530 IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 589

Query: 512 PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN D
Sbjct: 590 APGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQD 649

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 650 GLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPS 709

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 710 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 769

Query: 690 RLTA 693
           +L A
Sbjct: 770 KLMA 773


>gi|343482722|gb|AEM45106.1| RNA polymerase II second largest subunit [Archaeorhizomyces sp.
           FG15P2b]
          Length = 736

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/735 (63%), Positives = 556/735 (75%), Gaps = 39/735 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFRMLF+KLTRDV  Y+QKCV+  ++ NL  A+K+ TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAGLFRMLFKKLTRDVYKYMQKCVETNREFNLTLAVKSNTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q      R GVSQVLNR T+ASTLSHLRR N+PIGREGK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKGLAARVGVSQVLNRYTFASTLSHLRRTNTPIGREGKVAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM Y++VGSA+ PI+E LEEWG EN E+ +P+  P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSYVSVGSASAPIIESLEEWGMENLEDYNPSATPNTTKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDPE LV T+R LRR++D++ EV VVRDIR KELR+YTD GR  RPLFIV+  
Sbjct: 182 GVWLGVHRDPEHLVSTVRSLRRKLDISAEVSVVRDIREKELRLYTDAGRVCRPLFIVDND 241

Query: 284 -------RLLIKKRDIIALQ-------QRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 329
                   L++ K  + AL         R   E   W+DLV+ G +EYID EEEET MI+
Sbjct: 242 PDSARYGELMLTKGHVDALNAGREKTDDRPDSERFRWNDLVSNGIVEYIDAEEEETIMIA 301

Query: 330 MTINDL-----VQARLHPEEAY----------------ADTYTHCEIHPSLILGVCASII 368
           MT  DL     VQ  +H E+ +                A  +TH EIHPS+ILG+CASII
Sbjct: 302 MTPEDLEMSRQVQRGVHVEQEFNADDPGQRIKPTVNPDAHQWTHXEIHPSMILGICASII 361

Query: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 428
           PFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT++ +LYYPQKPL TTR+ME L    
Sbjct: 362 PFPDHNQSPRNTYQSAMGKQAMGVFLTNYQVRMDTMSNILYYPQKPLATTRSMEFLQXXX 421

Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 488
                            NQEDSVIMNQSSIDRG FRS+F+R Y D E+KMG  V E+F +
Sbjct: 422 XXXXXXXXXXXXXXXXXNQEDSVIMNQSSIDRGLFRSIFYRCYMDAEEKMGMQVMEEFEK 481

Query: 489 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRD 546
           P R +T+ ++HG+YDKL+DDGL  PGTRVSG+D+IIGKT PI  D E  GQ +++ T+RD
Sbjct: 482 PQRGSTLRLKHGTYDKLEDDGLIAPGTRVSGDDIIIGKTAPIPPDAEEMGQRTKFHTKRD 541

Query: 547 HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 606
            S  +R +E+G++DQV++TTN +GL+FVKVR+RS RIPQIGDKF+SRHGQKGT+G+TY  
Sbjct: 542 VSTPMRSTESGIIDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGITYRH 601

Query: 607 EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT-DVTVDNI 665
           EDMP+T EGI PDII+NPHAIPSRMT+  L+EC + KV+A  G EGDATPF   +TVD I
Sbjct: 602 EDMPFTSEGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGHEGDATPFNVAITVDAI 661

Query: 666 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 725
           SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRLKHMVDDKIH+R RGPVQILT
Sbjct: 662 SKLLREHGYQSRGFEIMYNGHTGRKLQAQVFLGPTYYQRLKHMVDDKIHARARGPVQILT 721

Query: 726 RQPAEGRSRDGGLRF 740
           RQP EGRSRDGGLRF
Sbjct: 722 RQPVEGRSRDGGLRF 736


>gi|396941935|gb|AFN89684.1| RNA polymerase II, partial [Starmerella bombicola]
          Length = 774

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/725 (62%), Positives = 566/725 (78%), Gaps = 32/725 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  E++KAY+FGY++HRLLL AL RR +DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 50  LLPHITQQEGYESRKAYFFGYMVHRLLLVALDRREQDDRDHFGKKRLDLAGPLLANLFRM 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  Y+QKC+++ K+ NL  A+K+ TIT+GLKYSLATGNWG Q  A  T+AGV
Sbjct: 110 LFKKLTRDIFRYMQKCIESNKEFNLTLAVKSNTITNGLKYSLATGNWGDQKRAMSTKAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIG++GK+AKP QLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTFSSTLSHLRRTNTPIGKDGKIAKPXQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + PI+ FL+EWG E  E+ SP      T++FVNG WVG+H +P +L +T
Sbjct: 230 SLMTGISVGSPSEPIIFFLQEWGMEPLEDFSPHESTNVTRVFVNGVWVGVHHEPTLLDQT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-RLLIKKRDIIALQQR 298
           ++ LRRR D++ E+ +VRDIR +E +I TD GR  RPLF+VE    L + K  +  L   
Sbjct: 290 MKNLRRRGDISPEITIVRDIREQEFKILTDAGRVYRPLFVVENGGELKLTKDQVYQLLNT 349

Query: 299 E-------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--PEE----- 344
           E       SP+  GW +LVA G +EYID EEEETTMI+MT  DL  +R+   PEE     
Sbjct: 350 EESGLTPESPDYFGWSNLVANGIVEYIDGEEEETTMIAMTPEDLELSRVQHDPEEVSETI 409

Query: 345 --------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
                         + A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 410 DNGSVSRRLKAKGSSTAQTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 469

Query: 391 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 450
           G+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDS
Sbjct: 470 GVFLTNYNVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDS 529

Query: 451 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 510
           +IMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ +R+G+YDKLD+DGL
Sbjct: 530 MIMNQSSIDRGMFRSLFFRSYLDQERRIGMSVVEEFEKPTRADTLRLRNGTYDKLDEDGL 589

Query: 511 APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 568
           A PG RVSGED+IIGKT PI  D E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN 
Sbjct: 590 AIPGVRVSGEDIIIGKTAPIPPDTEELGQRTKFHTKRDASTPLRSTESGIVDQVLLTTNQ 649

Query: 569 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
           +GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIP
Sbjct: 650 EGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAEGLVPDLIINPHAIP 709

Query: 629 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 688
           SRMT+  LIEC++ KV+A  G EGDATPFT+VTVD +SK L   GYQ RGFE MYNGHTG
Sbjct: 710 SRMTVAHLIECLLSKVSALSGLEGDATPFTEVTVDAVSKLLRDHGYQSRGFEIMYNGHTG 769

Query: 689 RRLTA 693
           ++LTA
Sbjct: 770 KKLTA 774


>gi|396941959|gb|AFN89696.1| RNA polymerase II, partial [Botryozyma nematodophila]
          Length = 776

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/729 (63%), Positives = 559/729 (76%), Gaps = 36/729 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+LLCAL R   DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 48  LLPHITQDEGYETRKAFFLGYMVHRMLLCALERSEVDDRDHFGKKRLDLAGPLLANLFRM 107

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRDV  Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 108 LFKKLTRDVYRYMQKCVETSKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGV 167

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 168 SQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 227

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +L+  I+VGS + PI+ FLEEWG E  E+  P   P +T++FVNG W+G HRDP  LV T
Sbjct: 228 SLLSCISVGSPSQPIIFFLEEWGMEPLEDYVPHASPNSTRVFVNGVWIGTHRDPASLVDT 287

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV +VRDIR +E RI+TD GR  RPLF+V+       K  L+++K  I
Sbjct: 288 MRTLRRRGDISPEVSIVRDIREREFRIFTDAGRVYRPLFVVDIEDGSPTKGELVLRKEHI 347

Query: 293 IAL--QQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH------P 342
             L  Q  ++PE+   GW  LV  G +EYID EEEET MI+MT  DL  +R        P
Sbjct: 348 HKLLDQDLDAPEEEQFGWPQLVENGIVEYIDAEEEETIMITMTPEDLEISRQMQAGGNVP 407

Query: 343 EE----------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
           +E                 +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG
Sbjct: 408 DEYEDEIDPAKRVKPAYNPHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMG 467

Query: 387 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
           KQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYN
Sbjct: 468 KQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYN 527

Query: 447 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
           QEDSVIMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R   + ++HG+YDKLD
Sbjct: 528 QEDSVIMNQSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPVRGEALRLKHGTYDKLD 587

Query: 507 DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLL 564
           DDGL  PG RVSG+D+IIGKT PI  D E  GQ + + T+RD S  LR +E+G+VDQVLL
Sbjct: 588 DDGLIAPGVRVSGDDIIIGKTAPIPPDAEELGQRTNFHTKRDASTPLRSTESGIVDQVLL 647

Query: 565 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 624
           TTN +GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PDII+NP
Sbjct: 648 TTNQEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTAEGIVPDIIINP 707

Query: 625 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 684
           HAIPSRMT+  LIEC++ KV+A  G EGDATPFT VTV+ IS  L   GYQ RGFE MYN
Sbjct: 708 HAIPSRMTVAHLIECLLSKVSALSGLEGDATPFTXVTVEAISGLLRDHGYQSRGFEVMYN 767

Query: 685 GHTGRRLTA 693
           GHTGR+L A
Sbjct: 768 GHTGRKLVA 776


>gi|396941951|gb|AFN89692.1| RNA polymerase II, partial [Dipodascopsis uninucleata]
          Length = 772

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/724 (62%), Positives = 559/724 (77%), Gaps = 31/724 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++H++L CAL RR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPHITQSEGYETRKAFFLGYMVHKMLQCALERRELDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRDV  Y+QKCV+  +D NL  A+K  TIT+GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFKKLTRDVYKYMQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PI+ FLEEWG E  E+  P   P AT++FVNG W+G HRDP  L +T
Sbjct: 229 SLMTSISVGTPSQPIIFFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGTHRDPAALTET 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDI 292
           +R LRRR  ++ EV ++RDIR KE +I+TD  R  RPLFIV   +       L+++K  I
Sbjct: 289 IRSLRRRAHISPEVSIIRDIREKEFKIFTDAXRVMRPLFIVNNDKSSPRNGELMLRKEHI 348

Query: 293 IAL-QQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---------- 339
             L    ES E+   GW  LV+ G +EY+D EEEET MI+MT  DL  +R          
Sbjct: 349 SKLIDDFESTEEDRYGWSSLVSDGIVEYLDAEEEETAMIAMTPEDLEMSRQLNLGTEIAE 408

Query: 340 -LHPE-------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
            L P         A + T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 409 NLDPSYRVKPTASASSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 468

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +Y+TNY  RMDT+A +LYYPQKPL TTR+ME++ FR+LPAG NAIVAI CYSGYNQEDSV
Sbjct: 469 VYLTNYGVRMDTMANILYYPQKPLATTRSMEYMKFRELPAGQNAIVAILCYSGYNQEDSV 528

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLFFRSY D+EK++G  V E+F +P R NT+ M+HG+YDKLDDDGL 
Sbjct: 529 IMNQSSIDRGLFRSLFFRSYMDQEKRVGMSVVEEFEKPVRGNTLRMKHGTYDKLDDDGLI 588

Query: 512 PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGED+IIGKT PI  D E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN +
Sbjct: 589 APGVRVSGEDIIIGKTAPIPPDTEELGQRTQFHTKRDVSTPLRSTESGIVDQVLLTTNGE 648

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GLRFVK+R+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIPS
Sbjct: 649 GLRFVKIRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGVVPDLIINPHAIPS 708

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMT+  LIEC++ KV++  G EGDATPFTDVTV+ +SK L + GYQ RGFE MYNGHTG+
Sbjct: 709 RMTVAHLIECLLSKVSSLSGLEGDATPFTDVTVEAVSKLLREHGYQSRGFEVMYNGHTGK 768

Query: 690 RLTA 693
           +L A
Sbjct: 769 KLMA 772


>gi|45545339|gb|AAS67517.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Alyxoria varia]
          Length = 894

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/749 (61%), Positives = 561/749 (74%), Gaps = 42/749 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  +T+KA++FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 146 FLPHISQKEGSDTRKAFFFGYMIHRLLQCVLGRREEDDRDHFGKKRLDLAGPLIANLFRV 205

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLT+DV  Y+QKCV+N  + N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 206 LFLKLTKDVFKYLQKCVENSTEFNVQMAVKASVITNGLKYSLATGNWGDQKKAASAKAGV 265

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 266 SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 325

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM Y++VGS + PI +F+ +   E  EE  P V P ATK+FVNG WVG+H +P  LV  
Sbjct: 326 SLMCYVSVGSESTPITDFMGQRNMELLEEYDPVVNPTATKVFVNGVWVGVHSNPGQLVSV 385

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK----------------- 282
           ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE+                 
Sbjct: 386 VQELRRNGTLSYEMTLIRDIRDREFKIFTDAGRVMRPLFVVEQDVRKPNKGSLVLTKQHV 445

Query: 283 -QRLLIKKRDIIALQQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
            Q L  K  D       E+ E   GW  L+  G +EY+D EEEET MI MT  DL     
Sbjct: 446 QQILADKDIDTKGYSDEEAAEMKFGWKGLIHAGVVEYLDAEEEETAMIIMTPEDLEEHRD 505

Query: 336 -VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
            +Q    PE   +D              TYTHCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 506 LMQGIPAPEGVPSDRHKRIKPKPNPSVKTYTHCEIHPSMILGICASIIPFPDHNQSPRNT 565

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIA
Sbjct: 566 YQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIA 625

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+ ++ G
Sbjct: 626 CYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPMRADTLRLKGG 685

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGM 558
           +YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR +E G+
Sbjct: 686 TYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAKELGQKTTMHTKRDVSTPLRSTENGI 745

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ P
Sbjct: 746 VDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLVP 805

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           DII+NPHAIPSRMTI  L+EC++ KV +  GKEGDATPFTDVTV+++SK L   GYQ RG
Sbjct: 806 DIIINPHAIPSRMTIAHLVECLLSKVGSLEGKEGDATPFTDVTVESVSKLLANNGYQQRG 865

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           FE MYNGHTG++L A IFLGPTYYQRL+H
Sbjct: 866 FEVMYNGHTGKKLRAQIFLGPTYYQRLRH 894


>gi|300394698|gb|ADK11887.1| DNA-directed RNA polymerase II subunit two, partial [Ceraceomyces
           borealis]
          Length = 693

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/694 (66%), Positives = 552/694 (79%), Gaps = 26/694 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L+++K+ I  L Q    EDG    W  L+  G IE +D EEEET MISMT  DL
Sbjct: 240 IVENQQLVLQKKHIKWLNQGYRDEDGEEFKWEQLIKGGIIELLDAEEEETVMISMTPEDL 299

Query: 336 VQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL          +E +           A T+THCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 300 ENSRLQQSGTDPHANDEEFDPAARLKAGTNAHTWTHCEIHPSMILGICASIIPFPDHNQS 359

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRENTLR 479

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDK++DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480 MKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540 ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++SK L + GY
Sbjct: 600 GIVPDIIINPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTDLTVESVSKFLLQKGY 659

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
           Q RG E MY+GHTGR+L A ++LGPTYYQRLKHM
Sbjct: 660 QSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHM 693


>gi|396941957|gb|AFN89695.1| RNA polymerase II, partial [Trigonopsis variabilis]
          Length = 757

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/722 (63%), Positives = 557/722 (77%), Gaps = 29/722 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+LL A+GR   DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 36  LLPHITQEEGFETRKAFFLGYMVHRMLLVAMGRAEVDDRDHFGKKRLDLAGPLLAKLFRD 95

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRDV  Y+QKCV+  KD NL  A+K+ TIT+GL+YSLATGNWG Q      RAGV
Sbjct: 96  LFRKLTRDVYRYMQKCVETNKDFNLTLAVKSNTITNGLRYSLATGNWGDQKKFMSARAGV 155

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 156 SQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 215

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS A PI+ FLEEWG E  E+  P   P  T++FVNG W+G+HRD   L  T
Sbjct: 216 SLMSCISVGSPAEPIICFLEEWGMEPLEDFVPHASPNVTRVFVNGVWIGVHRDASHLTDT 275

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRR+ D+++EV ++RDIR KE RI+TD GR  RPLF+V+       K  L+++K  +
Sbjct: 276 MKSLRRKGDISSEVSIIRDIREKEFRIFTDAGRVYRPLFLVDNDPDSERKGELILQKEHV 335

Query: 293 IALQQRESPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-LHPEEAYAD- 348
             L + E  E  G  W  LV  G +EYID EEEET MI+MT  DL  AR LH   A    
Sbjct: 336 SRLLEDEGEEGSGYGWSSLVQDGVVEYIDGEEEETIMIAMTPEDLEYARQLHESNAEPKE 395

Query: 349 ---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 393
                          T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG++
Sbjct: 396 ELDPAKRVKQHLDLLTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVF 455

Query: 394 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 453
           +TNY  RMDT+A +LYYPQKPL TTR+MEH  FR+LPAG NAIVAI CYSGYNQEDSVIM
Sbjct: 456 LTNYSVRMDTMANILYYPQKPLATTRSMEHFKFRELPAGQNAIVAILCYSGYNQEDSVIM 515

Query: 454 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 513
           NQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLDDDGL  P
Sbjct: 516 NQSSIDRGLFRSLFFRSYMDQERRVGMSVVEEFEKPSRADTLRLKHGTYDKLDDDGLIAP 575

Query: 514 GTRVSGEDVIIGKTTPI-SQDEAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGL 571
           G RVSGED+IIGKT PI  ++E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN +GL
Sbjct: 576 GVRVSGEDIIIGKTAPIPPENEELGQRTKFHTKRDASTPLRSTESGIVDQVLLTTNQEGL 635

Query: 572 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 631
           RFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PDII+NPHAIPSRM
Sbjct: 636 RFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIVPDIIINPHAIPSRM 695

Query: 632 TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
           T+  LIEC++ KV+A  G EGDATPFT+VTVD +S+ L + GYQ RGFE MYNGHTGR+L
Sbjct: 696 TVAHLIECLLSKVSALSGYEGDATPFTEVTVDAVSRLLREHGYQSRGFEVMYNGHTGRKL 755

Query: 692 TA 693
            A
Sbjct: 756 VA 757


>gi|56694352|gb|AAW22916.1| RNA polymerase II second largest subunit [Juniperus communis]
          Length = 514

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/517 (87%), Positives = 481/517 (93%), Gaps = 3/517 (0%)

Query: 189 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 248
           S+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1   SSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 249 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 308
           VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK D   LQ   +  + GWH+
Sbjct: 61  VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKSDXNNLQ---ASREEGWHE 117

Query: 309 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 368
           L+ +G IEY+DTEEEETTMISMTI DLV AR++PE+AY+ TYTHCEIHPSLILGVCASII
Sbjct: 118 LITQGCIEYVDTEEEETTMISMTIXDLVNARINPEDAYSHTYTHCEIHPSLILGVCASII 177

Query: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 428
           PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 178 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 237

Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 488
           LPAGINAIV I+CYSG  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+ GTLVKE+FGR
Sbjct: 238 LPAGINAIVXISCYSGXXQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRAGTLVKEEFGR 297

Query: 489 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 548
           P+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+  GQ S+YT+RD S
Sbjct: 298 PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTAGQVSKYTKRDQS 357

Query: 549 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
            SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 358 TSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 417

Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
           MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD ISKA
Sbjct: 418 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDXISKA 477

Query: 669 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           LHKCGYQMRGFETMYNGHTGR+L+AMI LGPTYYQRL
Sbjct: 478 LHKCGYQMRGFETMYNGHTGRKLSAMIXLGPTYYQRL 514


>gi|45545329|gb|AAS67512.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Diploschistes muscorum]
          Length = 901

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/747 (60%), Positives = 566/747 (75%), Gaps = 40/747 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+L  ALGRR  DDRDH+G KRLDLAGPL+  LFR 
Sbjct: 155 LLPHISQSEGSETRKAFFLGYMVHRMLQVALGRREPDDRDHFGKKRLDLAGPLMASLFRS 214

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF +LT+DV  Y+QKC++  +D N+   +K+ T+T+GLKYSLATGNW  Q  AA  +AGV
Sbjct: 215 LFNRLTKDVLKYLQKCIEGNRDFNIALGVKSTTLTNGLKYSLATGNWSEQKKAAQGKAGV 274

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 275 SQVLNRYTFASTLSHLRRTNTPLGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 334

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YITVGS   PI+EF+ +   E  EE  P   P  TK+FVNG WVG+HRDP  L  T
Sbjct: 335 ALMCYITVGSPGEPIIEFMVQRNMEVLEEYEPTRSPNITKVFVNGVWVGVHRDPAHLYNT 394

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDI 292
           +  LRRR  ++ EV ++RDIR +E +I+TD GR +RPLF+++  +       L++ K  +
Sbjct: 395 VLSLRRRNMISHEVSLIRDIRDQEFKIFTDAGRVARPLFVIDNDKRSSRRGELVLSKELV 454

Query: 293 IALQQ-RESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
             L+  RE P D           GW  LV  G +EY+D EEEET MI+MT  DL     V
Sbjct: 455 NRLEDDRELPPDLDPDEKKEKYFGWEGLVKSGAVEYLDAEEEETVMIAMTPEDLDISRQV 514

Query: 337 QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
           QA   P E   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 515 QAGYAPPEPSTDQNARFKAPINTNVHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 574

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CY
Sbjct: 575 SAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCY 634

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  + E F +P RS T+ ++HG+Y
Sbjct: 635 SGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRVGMSLVEQFEKPLRSETLRLKHGTY 694

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHSETGMVD 560
           +KLDDDGL  PG RVSGEDVIIGKT PI+ D  + GQ ++ +++RD S  LR +E G+VD
Sbjct: 695 EKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDTDELGQRTKLHSKRDASTPLRSTENGIVD 754

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           +VLLTTN +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+
Sbjct: 755 KVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDL 814

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S+ L + GYQ RGFE
Sbjct: 815 IINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRGFE 874

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MYNGHTGR+L A +F GPTYYQRL+H
Sbjct: 875 VMYNGHTGRKLRAQVFFGPTYYQRLRH 901


>gi|45545337|gb|AAS67516.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Neofusicoccum mangiferae]
          Length = 910

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/756 (61%), Positives = 563/756 (74%), Gaps = 52/756 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  ETKKA++ GY+I+RLL C LGRR EDDRDH+G KRLDLAGPLL  LFR 
Sbjct: 158 FLPHISQAEGSETKKAFFLGYMIYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRS 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLTRDV  Y++KC++ G+  +LQ A+K  TIT+GLKYSLATGNWG Q  AA ++AGV
Sbjct: 218 LFLKLTRDVYNYLKKCIEAGRPFSLQSAVKQGTITNGLKYSLATGNWGDQKKAASSKAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 278 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  +TVGS   PI +F+ +   E  EE  P V P ATKIF+NG WVG+HRDP  LV  
Sbjct: 338 SLMCNVTVGSDVTPIQDFMTQRNMELLEEYEPNVSPNATKIFINGVWVGVHRDPTQLVSV 397

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKR-- 290
           +++LRR   ++ E+ ++RD+R +E +I+TD GR  RPLFI++       K  L++ +   
Sbjct: 398 VKKLRRDGTLSAEMSLIRDVRDREFKIFTDAGRVCRPLFIIDDDPFSPNKGNLVLAREHI 457

Query: 291 ---------DIIALQQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 340
                    D+  +   E  E   GW  L+  G +EY+D EEEE  MI+MT +DL   R 
Sbjct: 458 DKLEADQEIDVSGMNDDERDEKRYGWKGLLQSGVVEYMDAEEEEVAMITMTPDDL---RA 514

Query: 341 H--------------------PEE-------AYADTYTHCEIHPSLILGVCASIIPFPDH 373
           H                    P E            YTHCEIHPS+ILG+CASIIPFPDH
Sbjct: 515 HHRARQGIIDEEDEESKRNRDPHERVVPAPNPSVKQYTHCEIHPSMILGICASIIPFPDH 574

Query: 374 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 433
           NQSPRNTYQSAMGKQAMG+ +TNY+ RMDT+  VLYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 575 NQSPRNTYQSAMGKQAMGVCLTNYELRMDTMVNVLYYPQKPLATTRSMEYLRFRELPAGQ 634

Query: 434 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 493
           NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EKK+G  V E F +P RS+
Sbjct: 635 NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKVGMAVVEQFEKPLRSD 694

Query: 494 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISL 551
           TM ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  L
Sbjct: 695 TMRLKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKMHIKRDVSTPL 754

Query: 552 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 611
           R +E G+VD VLLTTN+DGL+FVKVR R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+
Sbjct: 755 RSTENGIVDSVLLTTNSDGLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPF 814

Query: 612 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 671
           T EG+TPDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVTV  +S  L +
Sbjct: 815 TREGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALRGQEGDATPFTDVTVTQVSSLLRE 874

Query: 672 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            GYQ RGFE MYNGHTG++LTA +FLGPTYYQRL+H
Sbjct: 875 HGYQSRGFEVMYNGHTGKKLTAQVFLGPTYYQRLRH 910


>gi|396941831|gb|AFN89633.1| RNA polymerase II, partial [Vanderwaltozyma polyspora]
          Length = 775

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/726 (63%), Positives = 560/726 (77%), Gaps = 33/726 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ 
Sbjct: 50  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKT 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 230 SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
           LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 290 LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVENDEQLGHKELKVRKGHIA 349

Query: 294 ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQ----- 337
            L   E           E+  W  L+ +G +EYID EEEET +I+M   DL  VQ     
Sbjct: 350 RLMATEYQDIEGGFEDSEEYTWSSLLNEGLVEYIDAEEEETILIAMQPEDLDPVQEEEEM 409

Query: 338 --------ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
                   A+      +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 410 EVDENVDTAKRIRSVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 469

Query: 390 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
           MG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 470 MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQED 529

Query: 450 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
           S+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HGSYDKLDDDG
Sbjct: 530 SMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDG 589

Query: 510 LAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTN 567
           L  PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN
Sbjct: 590 LIAPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTN 649

Query: 568 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
            DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAI
Sbjct: 650 QDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAI 709

Query: 628 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
           PSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHT
Sbjct: 710 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHT 769

Query: 688 GRRLTA 693
           G++L A
Sbjct: 770 GKKLMA 775


>gi|99866478|gb|ABF67584.1| RNA polymerase II second largest subunit, partial [Auricularia
           auricula-judae]
          Length = 690

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/691 (65%), Positives = 548/691 (79%), Gaps = 25/691 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  KD NL  A+KA TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLASLFRMLFRKLTKDVYRYLQKCVEARKDFNLNLAVKANTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +   +AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP +TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSGIP-STKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQRESPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+L+IKK  +  +Q +E        W +L+  G IE +D EEEET MI MT +DL  +R
Sbjct: 240 DQQLVIKKHHVEWIQNKEDEHGASFKWDNLIKTGLIELLDAEEEETVMICMTSDDLENSR 299

Query: 340 LH-----PEEA--------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           L      P +A               A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 300 LQSRGMAPRDADNEFDPAARLKSIVNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 359

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMGIY+TN+Q R DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 360 YQSAMGKQAMGIYLTNFQVRQDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 419

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G +  E+F +P R  T+ M+HG
Sbjct: 420 CYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEKKSGMVALEEFEKPSRDTTLRMKHG 479

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKL+DDGL  PGT V+GED+IIGKT P+ QD E  GQ +R + +RD S  L+ +E G+
Sbjct: 480 TYDKLEDDGLIAPGTGVAGEDIIIGKTAPLPQDSEELGQRTRTHQKRDVSTPLKSTENGI 539

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTN DG +FVK+R+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITP
Sbjct: 540 VDQVLITTNQDGQKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITP 599

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           DI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L   GY  RG
Sbjct: 600 DIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQVLRSSGYHSRG 659

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
            E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660 LEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690


>gi|396941817|gb|AFN89626.1| RNA polymerase II, partial [Nakaseomyces delphensis]
          Length = 763

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/724 (62%), Positives = 561/724 (77%), Gaps = 31/724 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 40  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 99

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 100 LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 159

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 160 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 219

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 220 SLMSCISVGADPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 279

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDII 293
           LR LRR+ D+N EV ++RDIR +EL+I+TD GR  RPLFIVE      ++ L ++K  + 
Sbjct: 280 LRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVA 339

Query: 294 ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA---RLH 341
            L   E           E+  W  L+ +G +EYID EEEE+ +I+M   DL  A    + 
Sbjct: 340 KLMATEYQDIEGGFEDAEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAGEPDVR 399

Query: 342 PEEA----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
           P+            +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 400 PDNVDLAKRIRVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 459

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +++TNY FRMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 460 VFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 519

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 520 IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 579

Query: 512 PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGED+IIGKTTPI+ DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN D
Sbjct: 580 APGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD 639

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 640 GLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPS 699

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 700 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 759

Query: 690 RLTA 693
           +L A
Sbjct: 760 KLMA 763


>gi|258562132|gb|ACV81788.1| RNA polymerase II second largest subunit [Agaricus bisporus]
          Length = 697

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/696 (66%), Positives = 550/696 (79%), Gaps = 25/696 (3%)

Query: 57  LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 115
           LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  +
Sbjct: 3   LFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSS 62

Query: 116 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 175
           +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGL
Sbjct: 63  KAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGL 122

Query: 176 VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEM 235
           VKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  
Sbjct: 123 VKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTSP-CTKVFVNGVWMGVHRDPAN 181

Query: 236 LVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL 295
           LVKT+++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL+ KR I  L
Sbjct: 182 LVKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWL 241

Query: 296 QQRESPE--DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA- 345
                 E  +  W  L+  G IE +D EEEET MISMT  DL  +RL       H  +  
Sbjct: 242 NSGSDDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGD 301

Query: 346 -----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 394
                      +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM KQAMGIY+
Sbjct: 302 FDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYL 361

Query: 395 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 454
           TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMN
Sbjct: 362 TNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMN 421

Query: 455 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 514
           QSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PG
Sbjct: 422 QSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPG 481

Query: 515 TRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLR 572
           T V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +
Sbjct: 482 TGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQK 541

Query: 573 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
           FVKVRVR+ RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGI PD+I+NPHAIPSRMT
Sbjct: 542 FVKVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMT 601

Query: 633 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 692
           IG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L 
Sbjct: 602 IGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQ 661

Query: 693 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
           A I+LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 662 AQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 697


>gi|40643905|emb|CAD89691.1| RNA polymerase II, second largest subunit [Escallonia sp. Oxelman
           2340]
          Length = 508

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/468 (96%), Positives = 462/468 (98%)

Query: 247 VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 306
           VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV KQRLLIKK DI ALQQRE+PEDGGW
Sbjct: 19  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVNKQRLLIKKADIQALQQRETPEDGGW 78

Query: 307 HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 366
           HDLVAKG+IEYIDTEEEETTMISMTINDLV ARL+PEEAY++TYTHCEIHPSLILGVCAS
Sbjct: 79  HDLVAKGYIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCAS 138

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYPQKPLVTTRAMEHLHF
Sbjct: 139 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 198

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           RQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGTLVKEDF
Sbjct: 199 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDF 258

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRD 546
           GRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+AQGQASRY++RD
Sbjct: 259 GRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQGQASRYSKRD 318

Query: 547 HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 606
           HS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ
Sbjct: 319 HSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 378

Query: 607 EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 666
           EDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS
Sbjct: 379 EDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 438

Query: 667 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH
Sbjct: 439 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 486


>gi|45545327|gb|AAS67511.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Dibaeis baeomyces]
          Length = 893

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/750 (60%), Positives = 569/750 (75%), Gaps = 46/750 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+L   LGRR  DDRDH+G KRLDLAGPL+ GLFR 
Sbjct: 147 LLPHISQVEGSETRKAFFLGYMVHRMLQVTLGRRDPDDRDHFGKKRLDLAGPLMAGLFRT 206

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GL+YSLATGNWG Q  AA ++AGV
Sbjct: 207 LFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLRYSLATGNWGEQKKAASSKAGV 266

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 267 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 326

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  +TVGS + PI++F+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV T
Sbjct: 327 ALMCCVTVGSPSEPIIDFMVQRNMEILEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVST 386

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +  LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++       K  L++ K  +
Sbjct: 387 VMSLRRRGLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDAKSPNKGSLVLTKELV 446

Query: 293 IALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEETTMISMTINDL------ 335
             L+  ++ P D           GW  L+ +G +EY+D EEEET MI MT  DL      
Sbjct: 447 SRLEDDKDLPADMDPDEKAAKIMGWDGLIKRGVVEYLDAEEEETVMIVMTPEDLDISRQL 506

Query: 336 ----------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
                           V+A L+P    A T+THCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 507 QAGYQLPETTDDPNKRVKAPLNPT---AHTWTHCEIHPSMILGVCASIIPFPDHNQSPRN 563

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGI++TN+  RMD    +LYYPQKPL TTR+ME L FR+LPAG NAIVAI
Sbjct: 564 TYQSAMGKQAMGIFLTNFSERMDNAFNILYYPQKPLATTRSMEFLKFRELPAGQNAIVAI 623

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           ACYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D+EK++G  V E F +P RS+T+ ++H
Sbjct: 624 ACYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYTDQEKRVGMSVVEQFEKPMRSDTLKLKH 683

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDKLDDDGL  PG R+SGED+IIGKT PI+ D E  GQ ++ + +RD S  LR +E G
Sbjct: 684 GTYDKLDDDGLVAPGVRISGEDIIIGKTEPIAPDSEELGQRTKLHVKRDKSTPLRTTENG 743

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VD+V+L+TNA+GLRFVKVR R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 744 LVDKVMLSTNAEGLRFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIV 803

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++S+ L + GYQ R
Sbjct: 804 PDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEVTVDSVSRLLREHGYQSR 863

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           GFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 864 GFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 893


>gi|300394754|gb|ADK11915.1| DNA-directed RNA polymerase II subunit two, partial [Suillus
           bresadolae]
          Length = 694

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/695 (66%), Positives = 549/695 (78%), Gaps = 26/695 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL GLFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLAGLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  A  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L ++K+ +  L Q    +DG    W  LV  G IE +D EEEET MI MT  DL
Sbjct: 240 IVENQQLALQKKHVKWLNQGYREDDGEEFKWEQLVKNGIIELLDAEEEETVMICMTPEDL 299

Query: 336 VQARLH-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL      P +   D              T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300 ENSRLQSAGIDPHQNDGDYDPAARLKAGINSHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ 
Sbjct: 420 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLR 479

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480 MKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540 ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GI PDI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600 GIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           Q RG E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660 QSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 694


>gi|396941829|gb|AFN89632.1| RNA polymerase II, partial [Kazachstania viticola]
          Length = 771

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/722 (63%), Positives = 558/722 (77%), Gaps = 31/722 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ 
Sbjct: 50  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKT 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 230 SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
           LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 290 LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHIN 349

Query: 294 ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHP 342
            L   E           E+  W  L+ +G +EYID EEEET +I+M   DL  +Q  L P
Sbjct: 350 KLMATEYQDIEGGFEDSEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPIQDDLEP 409

Query: 343 -----------EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                          A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 410 IVDTDPAKRIKATQNATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 469

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 470 VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 529

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 530 IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 589

Query: 512 PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGED+IIGKTTP++ DE + GQ + Y ++RD S  LR +E G++DQVL+TTN D
Sbjct: 590 APGVRVSGEDIIIGKTTPVAPDEEELGQRTAYHSKRDASTPLRSTENGIIDQVLVTTNQD 649

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 650 GLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPS 709

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 710 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 769

Query: 690 RL 691
           +L
Sbjct: 770 KL 771


>gi|94410936|gb|ABF18586.1| RNA polymerase II second largest subunit, partial [Camarophyllopsis
           hymenocephala]
          Length = 696

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/699 (65%), Positives = 553/699 (79%), Gaps = 29/699 (4%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+
Sbjct: 1   DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P
Sbjct: 121 NTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
             TK+FVNG W+G+HRDP  LVK +++LRR+ D++ EV VVRDIR +ELR+YTD GR  R
Sbjct: 181 -CTKVFVNGVWMGVHRDPANLVKXIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCR 239

Query: 276 PLFIVEKQRLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMT 331
           PLFIVE Q+L ++K+ I  L Q    +DGG    W  L+  G IE +D EEEET MISMT
Sbjct: 240 PLFIVENQQLALQKKHIRWLNQ--GYDDGGEEYKWEQLIKGGIIELLDAEEEETVMISMT 297

Query: 332 INDLVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPD 372
             DL  +RL       H  +   D            T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 298 PEDLENSRLQSSGVDPHANDGEFDPAARLKVGIDAHTWTHCEIHPSMILGICASIIPFPD 357

Query: 373 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 432
           HNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG
Sbjct: 358 HNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAG 417

Query: 433 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 492
            NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R 
Sbjct: 418 QNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRD 477

Query: 493 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 550
            T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  
Sbjct: 478 TTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTP 537

Query: 551 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 610
           L+ +E+G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 538 LKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMP 597

Query: 611 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 670
           +T EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L 
Sbjct: 598 FTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSTFLR 657

Query: 671 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 658 QKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 696


>gi|6606107|gb|AAF19066.1|AF107794_1 DNA-dependent RNA polymerase II RPB140 [Byssochlamys nivea]
          Length = 905

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/748 (61%), Positives = 571/748 (76%), Gaps = 41/748 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 158 FLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRT 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF ++TRD++ YVQ+CV+  +++ L   +KA T+T GLKY+LATGNWG Q  AA ++AGV
Sbjct: 218 LFTRVTRDLQRYVQRCVETNREIYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVL+R TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 278 SQVLSRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 338 ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPSHLVST 397

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
           ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 398 VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSENCGSLVLNKEHI 457

Query: 293 IALQQRE------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 340
             L+Q +      SPE+      GW  LV  G +EY+D EEEET MI MT  DL +  +L
Sbjct: 458 RKLEQDKELPPDLSPEERRERYFGWDGLVRSGVVEYVDAEEEETIMIVMTPEDLEISKQL 517

Query: 341 H-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                 PE+   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 518 QAGYALPEDEGNDPNKRVRSVLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 577

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 578 QSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 637

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+
Sbjct: 638 YSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGT 697

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDK+D+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G+V
Sbjct: 698 YDKIDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIV 757

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVL++T+ D L+FVKVR+R+ +IPQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 758 DQVLVSTSNDDLKFVKVRMRTTKIPQVGDKFASRHGQKGTIGITYRQEDMPFTREGIVPD 817

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S+ L + GYQ RGF
Sbjct: 818 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRGF 877

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           E MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 878 EVMYNGHTGRKLVAQVFLGPTYYQRLRH 905


>gi|56694336|gb|AAW22908.1| RNA polymerase II second largest subunit [Dacrydium cupressinum]
          Length = 498

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/500 (90%), Positives = 477/500 (95%), Gaps = 3/500 (0%)

Query: 203 TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 262
           TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LV+TLR+LRR+VDVN EVGVVRDIRL+
Sbjct: 2   TENFEEISPAVIPTATKIFVNGCWVGIHRDPELLVRTLRQLRRQVDVNPEVGVVRDIRLR 61

Query: 263 ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 322
           ELR+YTDYGRCSRPLF+V+KQRL+IKKRDI  L Q  +PEDG WHDL+ KGFIEY+DT E
Sbjct: 62  ELRLYTDYGRCSRPLFVVKKQRLIIKKRDINELWQ--NPEDG-WHDLITKGFIEYVDTXE 118

Query: 323 EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
           EETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 119 EETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 178

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY
Sbjct: 179 SAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 238

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGRP+R NT GMRHGSY
Sbjct: 239 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSY 298

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 562
           DKLDDDGLAPPGTRVSGEDVIIGKTTP+SQ+E+  Q S+YTRRD S SLRHSE+GMVDQV
Sbjct: 299 DKLDDDGLAPPGTRVSGEDVIIGKTTPVSQEESGNQISKYTRRDQSTSLRHSESGMVDQV 358

Query: 563 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 622
           LLTTN DGLRFVKVR+RSVR+PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV
Sbjct: 359 LLTTNQDGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 418

Query: 623 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 682
           NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKALHKCGYQMRGFETM
Sbjct: 419 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKALHKCGYQMRGFETM 478

Query: 683 YNGHTGRRLTAMIFLGPTYY 702
           YNGHTGR+L AMIFLGPTYY
Sbjct: 479 YNGHTGRKLNAMIFLGPTYY 498


>gi|169806505|ref|XP_001827997.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
 gi|161779137|gb|EDQ31162.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
          Length = 1138

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/833 (56%), Positives = 600/833 (72%), Gaps = 28/833 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+G  +FCETKKAY+ GY+I+++LL   G+R  DDRDHYG KR+DL+GPLL  LF++
Sbjct: 330  FLPHIGQQEFCETKKAYFLGYMINKILLVITGKRDVDDRDHYGKKRMDLSGPLLANLFKV 389

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF+KL  +   Y+QKCV+N ++ NL   +K+  IT G KY+LATGNWG Q  A  TRAGV
Sbjct: 390  LFKKLLTETTKYLQKCVENNREFNLTIGLKSSIITQGFKYALATGNWGHQEKAMSTRAGV 449

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            +QVL+R  + STLSHLRR+N+PI +EGKLA PRQLHN+ WGM+CP ETPEG ACGLVKNL
Sbjct: 450  AQVLSRYNFLSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMICPIETPEGHACGLVKNL 509

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM YI+VG ++  I+E LEE G E  EEI        TKI VNG W+G+  DP  +V+ 
Sbjct: 510  SLMAYISVGKSSNQIIEILEELGVERLEEIEYIY---GTKILVNGAWIGVTSDPVRIVQI 566

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            L++ RR  ++++E+ ++ DI+  E++I +D GR  RPLFIVE   LL+ K+DI  L+  +
Sbjct: 567  LKKFRRHGEIDSEISIIFDIKENEIKINSDAGRPCRPLFIVENNELLVNKQDIEDLKNIK 626

Query: 300  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
                  W DL+  G IE +D EEEE ++I+M +NDL              YTHCEIHP++
Sbjct: 627  IK----WDDLIKNGKIELLDIEEEEVSLIAMGLNDLKDTN--------KQYTHCEIHPAI 674

Query: 360  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
            ILG+ AS+IPFP HN SPRNTYQSAMGKQAMGIY TN+  RMDTL+ +L YPQKPLV+T+
Sbjct: 675  ILGITASVIPFPTHNPSPRNTYQSAMGKQAMGIYSTNFFKRMDTLSNILCYPQKPLVSTK 734

Query: 420  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
            +ME++ F++LP+G N IVAIACYSGYNQEDS+IMNQ+SIDRG FRS  FR+Y D+EK   
Sbjct: 735  SMEYIKFKELPSGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFRSFLFRTYSDQEKMKY 794

Query: 480  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 539
            T V E   + +RS     +  +YD L +DG+  PGT+V G+DVIIGK TPI   E     
Sbjct: 795  TGVNEKICKIERSVIFRPKKNNYDILGNDGIVCPGTQVYGDDVIIGKMTPILDVEKSTPG 854

Query: 540  SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
            +  Y  +D S  +R +E G +D+V++TT  DG +F KV+VRS+RIPQ+GDKF+SRH QKG
Sbjct: 855  NPFYLFKDTSTLIRKTEQGNIDKVIVTTK-DGYKFTKVKVRSMRIPQMGDKFASRHAQKG 913

Query: 599  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
             VG+T  QEDMP+T +G+ PD+I+NPHAIPSRMTIG L E ++GK+    G EGDATPF 
Sbjct: 914  VVGITLKQEDMPFTSDGLIPDVIINPHAIPSRMTIGHLFEALLGKLTTLNGIEGDATPFA 973

Query: 659  DV--TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
            +   T+D ISK L K GYQ RGFE M++G TG +L + IF+GPTYYQRLKHMVDDK+H+R
Sbjct: 974  NKPQTIDEISKELAKYGYQKRGFEIMHSGATGYKLKSQIFIGPTYYQRLKHMVDDKLHAR 1033

Query: 717  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
             RGP+QI+TRQP EGRSR+GGLRFGEMERDC+I+HGAS FLKERL D SD Y   VC++C
Sbjct: 1034 ARGPLQIMTRQPVEGRSREGGLRFGEMERDCIISHGASAFLKERLMDVSDVYTCGVCDNC 1093

Query: 777  GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            GLI   N    +         + I  ++IPYA KLL QEL  M I  R+ T+E
Sbjct: 1094 GLICNNNCTGCN--------NSTISNINIPYAFKLLIQELQGMNIFMRIQTQE 1138


>gi|396941827|gb|AFN89631.1| RNA polymerase II, partial [Naumovozyma dairenensis]
          Length = 775

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/726 (63%), Positives = 559/726 (76%), Gaps = 33/726 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 50  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L+ T
Sbjct: 230 SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
           LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 290 LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIN 349

Query: 294 ALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
            L   E  + +GG        W  L+ +G +EYID EEEET +I+M   DL    ++ +E
Sbjct: 350 KLMATEYQDIEGGFEDVEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPPAVNEDE 409

Query: 345 AYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
              D               T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 410 PMVDDLDPAKRIRAVQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 469

Query: 390 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
           MG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 470 MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQED 529

Query: 450 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
           S+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDG
Sbjct: 530 SMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDG 589

Query: 510 LAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTN 567
           L  PG RVSGEDVIIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN
Sbjct: 590 LIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTN 649

Query: 568 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
            DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAI
Sbjct: 650 QDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAI 709

Query: 628 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
           PSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ IS+ L + GYQ RGFE MYNGHT
Sbjct: 710 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISRLLREHGYQSRGFEVMYNGHT 769

Query: 688 GRRLTA 693
           G++L A
Sbjct: 770 GKKLMA 775


>gi|89090016|gb|AAO64654.3| RNA polymerase II subunit RPB2, partial [Dacrymyces chrysospermus]
          Length = 870

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/735 (62%), Positives = 564/735 (76%), Gaps = 27/735 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+ T +  E+KKAY+FGY++HRL+L AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 137 MLPHISTQEGAESKKAYFFGYMVHRLVLAALDRRELDDRDHFGKKRLDLAGPLLATLFRM 196

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFR+LT+DV  Y+QKCV+  ++ N+  A+K  TIT+GLKYSLATGNWG Q      +AGV
Sbjct: 197 LFRRLTKDVYRYMQKCVETHREFNINAAVKPATITNGLKYSLATGNWGDQKKFMQAKAGV 256

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+A+PRQLHN  WGM+       GQACGLVKNL
Sbjct: 257 SQVLNRYTFASTLSHLRRTNTPIGRDGKIARPRQLHNHHWGMVXXXXXXXGQACGLVKNL 316

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VG+ + P++EFLEEWG E   E +   +  ATK+FVNG W+GIHRDP+ LV T
Sbjct: 317 ALMACISVGTLSQPVVEFLEEWGLEPLGERTDEPL-TATKVFVNGVWMGIHRDPQHLVNT 375

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV--EKQRLLIKKRDIIALQQ 297
           +R LRR   +++E+ VVRDIR +ELR+YTD GR  RPLFIV  + Q L+I KR+I  L  
Sbjct: 376 VRTLRRSDGISSEISVVRDIRERELRLYTDAGRVCRPLFIVNEQTQNLVISKREINWLHA 435

Query: 298 RESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---------HPEE 344
           RE P +     GW  LV  G +E +D EEEET MI+MT  DL Q++          +PE 
Sbjct: 436 REKPGEKDKVYGWSQLVTSGMVELLDAEEEETVMIAMTPQDLDQSKTKRGTGYVSNNPEN 495

Query: 345 A--------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
           A        + + ++HCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN
Sbjct: 496 AAVRIKSTVHHEHWSHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTN 555

Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
           +Q RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 556 FQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 615

Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
           SIDRG FRS+++RSY D EK  G +  E+F +P R  T+ M+HG+YDKL+ DGL  PG  
Sbjct: 616 SIDRGLFRSIYYRSYTDMEKTTGIVPVEEFEKPHRDTTVRMKHGTYDKLEADGLVAPGIG 675

Query: 517 VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
           ++GED+IIGKT P+  D E  GQ +R +TRRD S  L+ +E G+VDQVL++TN  G++FV
Sbjct: 676 INGEDIIIGKTAPLPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLISTNESGVKFV 735

Query: 575 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
           KVR+RS RIPQIGDKF+SRHGQKGT+GMTY QEDMP+   GITPDII+NPHAIPSRMTIG
Sbjct: 736 KVRIRSTRIPQIGDKFASRHGQKGTIGMTYRQEDMPFAGNGITPDIIINPHAIPSRMTIG 795

Query: 635 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
            L+EC++ K+A  +G EGDATPFTD+TV+++S  L   GYQ RG E MY+GHTGR+L A 
Sbjct: 796 HLVECLLSKLATLIGNEGDATPFTDLTVESVSSLLRGKGYQQRGLEVMYHGHTGRKLQAQ 855

Query: 695 IFLGPTYYQRLKHMV 709
           ++LGPTYYQRLKHMV
Sbjct: 856 VYLGPTYYQRLKHMV 870


>gi|83415481|gb|ABC17948.1| RNA polymerase II second largest subunit, partial [Coemansia
           reversa]
          Length = 722

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/721 (62%), Positives = 556/721 (77%), Gaps = 25/721 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+DL GPLL  LFR LFR+LT+D+  Y+QKC+++ +D N+  A+K+  ITSGL+Y+LAT
Sbjct: 2   KRMDLGGPLLAMLFRTLFRRLTKDIGMYLQKCIESNRDFNMTLAVKSNIITSGLRYALAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A   RAGVSQVLNR T+ASTLSH+RR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGEQKKAMQARAGVSQVLNRYTFASTLSHMRRCNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM ++TVG  + PI EFL EW  EN  E+    I  ATK+F+N
Sbjct: 122 PAETPEGQACGLVKNLALMAHVTVGVDSSPIREFLNEWSMENLAEVQAKSIANATKVFLN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVGIHR P+ LV+ +   RR+ D+  E  +VRDIR +ELRI+TD GR  RPL IV+  
Sbjct: 182 GDWVGIHRKPDELVECMLDARRKADITFETSIVRDIRERELRIHTDSGRVCRPLLIVDSS 241

Query: 284 -RLLIKKRDIIALQQRESPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
            RL +KK  I A+++ +  ED    W DL+A G IEY+D EEEE  MI MT  +L ++  
Sbjct: 242 LRLRLKKAHIDAIERYDVAEDDAYKWADLLADGVIEYLDAEEEELAMICMTPQELAESHA 301

Query: 340 ------LHPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                 L P E             Y +T+THCEIHPS+ILG+CASI+PFPDHNQSPRNTY
Sbjct: 302 YRTTGALPPVETDQASRVRSQRNIYINTWTHCEIHPSMILGICASIVPFPDHNQSPRNTY 361

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMGI +TNYQ RMDTLA VLYYPQKPL TTRAM++L FR LPAG NAIVAI C
Sbjct: 362 QSAMGKQAMGIMLTNYQLRMDTLANVLYYPQKPLATTRAMDYLKFRDLPAGQNAIVAIMC 421

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           Y GYNQEDSVIMNQSSI+RG FRSL+FR+Y DEE K+G+     F +P    T+ ++HG+
Sbjct: 422 YGGYNQEDSVIMNQSSIERGLFRSLYFRTYHDEEDKLGSKELGTFEKPTPDTTLRLKHGT 481

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHSETGMV 559
           Y+KL+ DGL  PGTRV+G+D+IIGKTT I  D  + GQ ++ +++ D S +LR +E G+V
Sbjct: 482 YEKLEGDGLIAPGTRVTGDDIIIGKTTAIPPDSLELGQRTKSHSKIDASKALRSTECGIV 541

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQV++TTN DG +FVKVR+RS R+PQ+GDKF+SRHGQKGT+G+TY  EDMP++ EGI PD
Sbjct: 542 DQVMMTTNGDGFKFVKVRIRSTRVPQMGDKFASRHGQKGTIGITYRTEDMPFSAEGIVPD 601

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           II+NPHAIPSRMT+G L+EC++ K++  M  EGDATPFTDVTV+ IS+ L   GYQ RGF
Sbjct: 602 IIINPHAIPSRMTVGHLVECLLSKLSTLMASEGDATPFTDVTVEAISRELLGHGYQPRGF 661

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
           E MYNGHTGR+L A +FLGPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGR+RDGGLR
Sbjct: 662 EVMYNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRARDGGLR 721

Query: 740 F 740
           F
Sbjct: 722 F 722


>gi|396941931|gb|AFN89682.1| RNA polymerase II, partial [Sugiyamaella smithiae]
          Length = 771

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/722 (63%), Positives = 557/722 (77%), Gaps = 37/722 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+LLCAL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 50  LLPHITQEEGFETRKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLANLFRM 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFKKLTKDIYRYMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GK+A+PRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTFSSTLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + PI+ FLEEWG E  E+  P   P AT+IFVNG W+G+HRDP  LV T
Sbjct: 230 SLMSCISVGSPSQPIIYFLEEWGMEPLEDYVPHASPNATRIFVNGVWIGVHRDPAQLVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE RI+TD GR  RPLF+V+ +        L ++K  +
Sbjct: 290 MRSLRRRGDISPEVSIIRDIREKEFRIFTDAGRVYRPLFLVDNEEESSSRGELKLRKEHV 349

Query: 293 IALQQRESPEDG-------GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARL 340
             LQ++E   D        GW  LV+ G +EYID EEEET MI+MT  DL     +QA +
Sbjct: 350 YELQRQEEEPDSLDGSEPTGWSYLVSNGIVEYIDGEEEETVMIAMTPEDLELSRQMQAGI 409

Query: 341 H-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
             PEE   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM
Sbjct: 410 EIPEEEDPDPARRVKQPYNPNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM 469

Query: 386 GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
           GKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGY
Sbjct: 470 GKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGY 529

Query: 446 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
           NQEDSVIMNQSSID G FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKL
Sbjct: 530 NQEDSVIMNQSSIDMGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKL 589

Query: 506 DDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVL 563
           D+DGL  PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVL
Sbjct: 590 DEDGLIAPGIRVSGEDIIIGKTAPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVL 649

Query: 564 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
           LTTN +GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+N
Sbjct: 650 LTTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRREDMPFTAEGVVPDLIIN 709

Query: 624 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
           PHAIPSRMT+  LIEC++ KV+A  G EGDATPFTDVTVD ISK L   GY  RGFE M 
Sbjct: 710 PHAIPSRMTVAHLIECLLSKVSALSGLEGDATPFTDVTVDAISKLLRDHGYHSRGFEVMX 769

Query: 684 NG 685
           NG
Sbjct: 770 NG 771


>gi|396941815|gb|AFN89625.1| RNA polymerase II, partial [Tetrapisispora phaffii]
          Length = 775

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/726 (62%), Positives = 560/726 (77%), Gaps = 33/726 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ 
Sbjct: 50  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKT 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMTSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 230 SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
           LR LRR+ D+N EV ++RDIR +EL+I+TD GR  RPLFIV+       + L ++K  + 
Sbjct: 290 LRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVDDDDDLGHKELRVRKGHVA 349

Query: 294 ALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
            L   E  + +GG        W  L+ +G +EYID EEEE+ +I+M   DL      PE 
Sbjct: 350 RLMATEYQDIEGGFEDVEEYTWTSLLNEGLVEYIDAEEEESILIAMQPEDLDPVSDEPEA 409

Query: 345 A---------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
                           +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 410 IPDVETDTAKRIRAVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 469

Query: 390 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
           MG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 470 MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQED 529

Query: 450 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
           S+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HGSYDKLDDDG
Sbjct: 530 SMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDG 589

Query: 510 LAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTN 567
           L  PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN
Sbjct: 590 LISPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTN 649

Query: 568 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
            DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAI
Sbjct: 650 QDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAI 709

Query: 628 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
           PSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHT
Sbjct: 710 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHT 769

Query: 688 GRRLTA 693
           G++L A
Sbjct: 770 GKKLMA 775


>gi|396941953|gb|AFN89693.1| RNA polymerase II, partial [Lipomyces starkeyi]
          Length = 773

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/724 (62%), Positives = 559/724 (77%), Gaps = 31/724 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++H++L CAL RR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  LLPHITQSEGYETRKAFFLGYMVHKMLQCALERREVDDRDHFGKKRLDLAGPLLANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  Y+QKCV+  +D NL  A+K  TIT+GL+YSLATGNWG Q  A  +RAGV
Sbjct: 110 LFKKLTRDMYKYMQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+++ PI+ FLEEWG E  E+  P   P AT++FVNG W+G HRDP  L +T
Sbjct: 230 SLMSCISVGTSSQPIIYFLEEWGMEPLEDYVPHATPNATRVFVNGVWIGTHRDPAALAET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDI 292
           +R LRR   ++ EV +VRDIR KE +I+TD GR  RPLF+V+  +       L+++K  +
Sbjct: 290 IRSLRRTDHISAEVSIVRDIREKEFKIFTDAGRVYRPLFVVDTDKSSPHCGELMLRKGHV 349

Query: 293 I-ALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---------- 339
              L+  ES E+   GW  LV++G +EY+D EEEET MI+MT  DL  +R          
Sbjct: 350 NRLLEDFESTEEDRYGWTSLVSEGIVEYVDAEEEETVMIAMTPEDLEMSRQLQVGVEHSE 409

Query: 340 -LHPEEAY-------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
            L P           A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 410 SLDPSHRVKAMPSINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 469

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +Y+TNY  RMDT+A +LYYPQKPL TTR+ME + FR+LPAG NAIVAI CYSGYNQEDSV
Sbjct: 470 VYLTNYGVRMDTMANILYYPQKPLATTRSMEFMKFRELPAGQNAIVAILCYSGYNQEDSV 529

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLFFRSY D+EK++G  V E+F +P R NT+ M+HG+YDKLDDDGL 
Sbjct: 530 IMNQSSIDRGLFRSLFFRSYMDQEKRVGMAVVEEFEKPIRGNTLRMKHGTYDKLDDDGLI 589

Query: 512 PPGTRVSGEDVIIGKTTPI-SQDEAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGED+IIGKT PI  + E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN +
Sbjct: 590 APGVRVSGEDIIIGKTAPIPPETEELGQRTQFHTKRDVSTPLRSTESGIVDQVLLTTNGE 649

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GLRFVK+R+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPS
Sbjct: 650 GLRFVKIRMRTTKVPQIGDKFASRHGQKGTIGVTYKHEDMPFTAEGIVPDLIINPHAIPS 709

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMT+  LIEC+  KV++  G EGDATPFTDVTVD +SK L + GYQ RGFE MYNGHTG+
Sbjct: 710 RMTVAHLIECLXSKVSSLSGLEGDATPFTDVTVDAVSKLLREHGYQSRGFEVMYNGHTGK 769

Query: 690 RLTA 693
           +  A
Sbjct: 770 KXMA 773


>gi|396941855|gb|AFN89645.1| RNA polymerase II, partial [Aciculoconidium aculeatum]
          Length = 763

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/717 (62%), Positives = 555/717 (77%), Gaps = 24/717 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 47  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 106

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++T+T GL+YSLATGNWG Q  A   RAGV
Sbjct: 107 LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTVTDGLRYSLATGNWGEQKKAMSARAGV 166

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 167 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 226

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+A+ PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 227 SLMTCISVGTASEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAQLVDT 286

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDI------- 292
           +R LRRR DV+ EV ++RDIR KE +I+TD GR  RPLF+V+     I K DI       
Sbjct: 287 MRNLRRRGDVSPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDIESITKGDIKLEKEQV 346

Query: 293 --IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA------------ 338
             +   + +  E+  W  LV +G IEY+D EEEET MI+MT  DL               
Sbjct: 347 NKLLNSEYDEYEEYTWSSLVGEGVIEYVDAEEEETIMIAMTPEDLEATKSEIKTEIDPAK 406

Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
           R+ P  + + T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY 
Sbjct: 407 RIKPVFSSSSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYA 466

Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
            RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NA+VAI+CYSGYNQEDS+IMNQSSI
Sbjct: 467 VRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAVVAISCYSGYNQEDSMIMNQSSI 526

Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 518
           DRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG RVS
Sbjct: 527 DRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVS 586

Query: 519 GEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
           GED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +FVK 
Sbjct: 587 GEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKX 646

Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
           R+R+  IPQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRMT+  L
Sbjct: 647 RMRTTXIPQIGDKFASRHGQKGTIGVTYRHEDMPFSSQGIVPDLIINPHAIPSRMTVAHL 706

Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
           IEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHTG++L A
Sbjct: 707 IECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYNGHTGKKLMA 763


>gi|120561269|gb|ABM27019.1| RNA polymerase II second largest subunit, partial [Chytriomyces
           hyalinus]
          Length = 883

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/733 (61%), Positives = 566/733 (77%), Gaps = 28/733 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVGT    ET+KAY+FGY+IHRLLL  + RR  DDRDH+G KRLDLAGPL+  LFR+
Sbjct: 153 MLPHVGTKAHQETRKAYFFGYMIHRLLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRI 212

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQF---AIKAKTITSGLKYSLATGNWG-QANAAGTR 116
           LFRKLT+D+   +QK V++ K  N+Q    ++ A  + +GLKYSLATGNWG Q+ A+  R
Sbjct: 213 LFRKLTKDITRQLQKHVESNKAFNIQSLERSLDANVLKNGLKYSLATGNWGDQSKASQAR 272

Query: 117 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 176
           AGVSQVLNR T+ASTLSHLRRLNSP  R+GKLAKPRQLHN+QWGM+CPAETPEGQACGLV
Sbjct: 273 AGVSQVLNRYTFASTLSHLRRLNSPTDRDGKLAKPRQLHNTQWGMVCPAETPEGQACGLV 332

Query: 177 KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 236
           KN++LM  ITVG+++ P +E LEE   E  EE+ P+V+  ATK+F+NG W+G+HR+PE L
Sbjct: 333 KNMSLMAIITVGTSSGPFIEHLEELSMETLEEVGPSVLKDATKVFLNGMWLGVHREPENL 392

Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIA 294
           V+ LR  RR  +V+ EV +V D+   ELR+YTD GR SRPLFIV+K  Q+LLI++  ++A
Sbjct: 393 VENLRSTRRNCEVSPEVSIVHDVTECELRLYTDAGRISRPLFIVDKESQKLLIQRAHVLA 452

Query: 295 LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH----PE------- 343
           L+  E+  D  + DL+++G +EYIDTEEEET MI+M+ +DL  AR      PE       
Sbjct: 453 LRDPET--DATFVDLLSEGVVEYIDTEEEETAMIAMSPDDLESARKAARGIPEIKKERNR 510

Query: 344 -------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
                   A    +THCEIHPS+ILG+CASIIPFPDHNQSPRN YQSAMGKQAMGI++T+
Sbjct: 511 TERSQTISALTLNWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGIFLTS 570

Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
           +Q+RMD    +L+YPQKPL  TR+ME+L FR+LPAG NAIV I CYSGYNQEDS+IMNQS
Sbjct: 571 FQYRMDQTMNILFYPQKPLACTRSMEYLRFRELPAGQNAIVCICCYSGYNQEDSLIMNQS 630

Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
           SID+G FRSL+F+ Y D EKK G    E   +P R NT+ MR GSYDKLD DGL  PG R
Sbjct: 631 SIDKGLFRSLYFKVYIDTEKKEGMTQLETIEKPMRENTLRMRQGSYDKLDVDGLVSPGVR 690

Query: 517 VSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
           VSG+D++IGKT P+ +D E  GQ  S +T+RD S  L+ +E G++DQV++TTNADG +FV
Sbjct: 691 VSGDDILIGKTVPLPKDSEEMGQRTSGHTKRDDSTPLKSTEAGIIDQVMVTTNADGYKFV 750

Query: 575 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
           KVR+RS+R+PQIGDKF+SRHGQKGT G+TY  EDMP+T +GITPDII+NPHAIPSRMTIG
Sbjct: 751 KVRMRSIRVPQIGDKFASRHGQKGTCGITYRNEDMPFTRDGITPDIIINPHAIPSRMTIG 810

Query: 635 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
            L+EC++GKVA H G EGDATPFTDV V+ IS+ L   G+Q RGFE ++NGHTG++L A 
Sbjct: 811 HLVECLLGKVATHTGHEGDATPFTDVNVEEISRELEAFGFQKRGFEVLFNGHTGKKLNAQ 870

Query: 695 IFLGPTYYQRLKH 707
           ++ GPTYYQRLKH
Sbjct: 871 VYTGPTYYQRLKH 883


>gi|120561271|gb|ABM27020.1| RNA polymerase II second largest subunit, partial [Chytriomyces
           hyalinus]
          Length = 883

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/733 (61%), Positives = 566/733 (77%), Gaps = 28/733 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVGT    ET+KAY+FGY+IHRLLL  + RR  DDRDH+G KRLDLAGPL+  LFR+
Sbjct: 153 MLPHVGTKAHQETRKAYFFGYMIHRLLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRI 212

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQF---AIKAKTITSGLKYSLATGNWG-QANAAGTR 116
           LFRKLT+D+   +QK V++ K  N+Q    ++ A  + +GLKYSLATGNWG Q+ A+  R
Sbjct: 213 LFRKLTKDITRQLQKHVESNKAFNIQSLERSLDANVLKNGLKYSLATGNWGDQSKASQAR 272

Query: 117 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 176
           AGVSQVLNR T+ASTLSHLRRLNSP  R+GKLAKPRQLHN+QWGM+CPAETPEGQACGLV
Sbjct: 273 AGVSQVLNRYTFASTLSHLRRLNSPTDRDGKLAKPRQLHNTQWGMVCPAETPEGQACGLV 332

Query: 177 KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 236
           KN++LM  ITVG+++ P +E LEE   E  EE+ P+V+  ATK+F+NG W+G+HR+PE L
Sbjct: 333 KNMSLMAIITVGTSSGPFIEHLEELSMETLEEVGPSVLKDATKVFLNGMWLGVHREPENL 392

Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIA 294
           V+ LR  RR  +V+ EV +V D+   ELR+YTD GR SRPLFIV+K  Q+LLI++  ++A
Sbjct: 393 VENLRSTRRNCEVSPEVSIVHDVTECELRLYTDAGRISRPLFIVDKESQKLLIQRAHVLA 452

Query: 295 LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH----PE------- 343
           L+  E+  D  + DL+++G +EYIDTEEEET MI+M+ +DL  AR      PE       
Sbjct: 453 LRDPET--DATFVDLLSEGVVEYIDTEEEETAMIAMSPDDLESARKAARGIPEIKKERNR 510

Query: 344 -------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
                   A    +THCEIHPS+ILG+CASIIPFPDHNQSPRN YQSAMGKQAMGI++T+
Sbjct: 511 TERSQTVSALTLNWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGIFLTS 570

Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
           +Q+RMD    +L+YPQKPL  TR+ME+L FR+LPAG NAIV I CYSGYNQEDS+IMNQS
Sbjct: 571 FQYRMDQTMNILFYPQKPLACTRSMEYLRFRELPAGQNAIVCICCYSGYNQEDSLIMNQS 630

Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
           SID+G FRSL+F+ Y D EKK G    E   +P R NT+ MR GSYDKLD DGL  PG R
Sbjct: 631 SIDKGLFRSLYFKVYIDTEKKEGMTQLETIEKPMRENTLRMRQGSYDKLDVDGLVSPGVR 690

Query: 517 VSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
           VSG+D++IGKT P+ +D E  GQ  S +T+RD S  L+ +E G++DQV++TTNADG +FV
Sbjct: 691 VSGDDILIGKTVPLPKDSEEMGQRTSGHTKRDDSTPLKSTEAGIIDQVMVTTNADGYKFV 750

Query: 575 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
           KVR+RS+R+PQIGDKF+SRHGQKGT G+TY  EDMP+T +GITPDII+NPHAIPSRMTIG
Sbjct: 751 KVRMRSIRVPQIGDKFASRHGQKGTCGITYRNEDMPFTRDGITPDIIINPHAIPSRMTIG 810

Query: 635 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
            L+EC++GKVA H G EGDATPFTDV V+ IS+ L   G+Q RGFE ++NGHTG++L A 
Sbjct: 811 HLVECLLGKVATHTGHEGDATPFTDVNVEEISRELEAFGFQKRGFEVLFNGHTGKKLNAQ 870

Query: 695 IFLGPTYYQRLKH 707
           ++ GPTYYQRLKH
Sbjct: 871 VYTGPTYYQRLKH 883


>gi|55273997|gb|AAV48869.1| RNA polymerase II second largest subunit [Clavaria zollingeri]
          Length = 694

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/695 (65%), Positives = 553/695 (79%), Gaps = 25/695 (3%)

Query: 58  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 116
           FRMLFRKLT+DV  Y+QKCV+  K+ N+  A+K +TIT+GLKYSLATGNWG Q  +  ++
Sbjct: 1   FRMLFRKLTKDVYRYLQKCVETHKEFNIALAVKHQTITNGLKYSLATGNWGDQKKSMSSK 60

Query: 117 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 176
           AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLV
Sbjct: 61  AGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLV 120

Query: 177 KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 236
           KNLALM  I+VGS++ P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L
Sbjct: 121 KNLALMACISVGSSSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPAHL 179

Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
           V+T+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L ++K+ I  L 
Sbjct: 180 VRTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLN 239

Query: 297 Q--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYA 347
           Q   ++ E+  W  LV  G IE +D EEEET MISMT  DL  +RL       H  +   
Sbjct: 240 QGYDDTGEEFRWEQLVKGGIIELLDAEEEETVMISMTPEDLENSRLQSTGVDPHANDGEF 299

Query: 348 D------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
           D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+T
Sbjct: 300 DPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLT 359

Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
           N+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 360 NFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQ 419

Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
           SSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+ DGL  PGT
Sbjct: 420 SSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGNYDKLESDGLIAPGT 479

Query: 516 RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
            V G+D+IIGKT PI  D E  GQ +R +T+RD S  L+ +E+G++DQVL+TTN++G +F
Sbjct: 480 GVRGDDIIIGKTAPIPPDSEELGQRTRSHTKRDVSTPLKSTESGVIDQVLITTNSEGQKF 539

Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
           VKVR+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTI
Sbjct: 540 VKVRLRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTI 599

Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
           G L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A
Sbjct: 600 GHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQA 659

Query: 694 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 728
            ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 660 QVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 694


>gi|45545317|gb|AAS67506.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Ceramothyrium linnaeae]
          Length = 936

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/779 (60%), Positives = 567/779 (72%), Gaps = 39/779 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+G       +KA++ GY+++R+L CALGR   DDRDH G KRLDL+GPL+  LFRM
Sbjct: 158 FLPHIGQTSDATARKAFFLGYMVNRMLKCALGRTEPDDRDHLGKKRLDLSGPLMANLFRM 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
              K T+D   Y+QK V++G+ + ++   K   +T+GLKYSLATGNWG Q      +AGV
Sbjct: 218 QLDKATKDFFRYMQKRVESGQTIAIKAGWKPNIVTNGLKYSLATGNWGDQKKLDKAKAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVL+R T+ASTLSHLRR N+PIGREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL
Sbjct: 278 SQVLSRYTFASTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG-IHRDPEMLVK 238
           ALM  +T      P+  ++ E   E  E+  P + PQATK+FVNG W   I +DP+ LV 
Sbjct: 338 ALMSMVTNHYDTAPLQSYILEKNVEALEDWEPHLNPQATKVFVNGVWFAVILKDPKFLVD 397

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRD 291
             R LRRR  ++TEV +V DIR KE +I  D GR  RPLFIVE  R       L++ K  
Sbjct: 398 HFRMLRRRGTIDTEVSLVWDIRDKEFKISGDSGRIIRPLFIVETDRSSDNHGNLVLNKEH 457

Query: 292 IIAL--------QQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL- 340
           I  L        Q+   P DG   W DL+A G IEY+D EEEET MI M+   L+ +R  
Sbjct: 458 IAKLDETAYHMEQEMGEPADGYYRWLDLLADGVIEYLDAEEEETVMIVMSPEALLDSRNA 517

Query: 341 ---HPEEA--------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
               P E               +A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 518 QMGQPPEPDDDPLRRNDPLLNPHAHTFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 577

Query: 384 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
           AMGKQAMGI++TN+  RM+T+A +LYYPQKPL  T AME+L FR+LPAG NAIVAIA YS
Sbjct: 578 AMGKQAMGIFLTNFDQRMETMANILYYPQKPLARTMAMEYLKFRELPAGQNAIVAIATYS 637

Query: 444 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
           GYNQEDSVIMNQSSIDRG FRSLF+R+Y+D+EK +G  V E F +P RS+T+ ++HG+YD
Sbjct: 638 GYNQEDSVIMNQSSIDRGLFRSLFYRAYQDQEKMIGHAVVEQFEKPTRSDTLRLKHGTYD 697

Query: 504 KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQ 561
           KLDDDG+  PG RVSGED+I+GKT P++ D E  GQ   ++ +RD S  LR +E+G++DQ
Sbjct: 698 KLDDDGIVAPGVRVSGEDIIMGKTAPMAPDAEELGQRMKQHIKRDVSTPLRSTESGVIDQ 757

Query: 562 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
           VLLTT  DG +F KVRVR+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I
Sbjct: 758 VLLTTTGDGCKFAKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLI 817

Query: 622 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
           +NPHAIPSRMTI  LIEC++ KV A  G EGDATPFT VTV  IS  L   GYQ RGFE 
Sbjct: 818 INPHAIPSRMTIAHLIECLLSKVGALRGDEGDATPFTKVTVTQISSILENMGYQRRGFEV 877

Query: 682 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDGGLRF
Sbjct: 878 MYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 936


>gi|396941941|gb|AFN89687.1| RNA polymerase II, partial [Phaffomyces opuntiae]
          Length = 771

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/722 (62%), Positives = 562/722 (77%), Gaps = 29/722 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHITQREGFESRKAFFLGYMINRLLLCALERKGQDDRDHFGKKRLDLAGPLLANLFRV 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  ++Q+ V+ G D NL+ A+KA TITSGL YSLATGNWG Q  A  +RAGV
Sbjct: 110 LFKKLTRDIYRFMQRSVETGVDFNLKLAVKATTITSGLXYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  EE  P   P  T+IFVNG W GIH+DP  LV+T
Sbjct: 230 SLMSCISVGTGSDPILYFLEEWGMEPLEEYLPHQNPDVTRIFVNGVWHGIHKDPAKLVET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI- 292
           +R LRRR +++ EV ++RDIR KE +I+TD GR  RPLF+VE+      + L +KK  + 
Sbjct: 290 MRSLRRRGEISPEVSIIRDIREKEFKIFTDAGRVYRPLFVVEENAETGTKELALKKEHVE 349

Query: 293 -IALQQRESPEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTINDL----------- 335
            +A  + E  E+ G     W+ L++ G +EY+D EEEET MI+M+  DL           
Sbjct: 350 RVAASEFEDAEETGEEPFGWNALLSNGIVEYVDAEEEETIMIAMSHEDLDPNLYEDNENQ 409

Query: 336 -VQARLHPEEA-YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 393
               R+ P  +  A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 410 DPNKRIKPTSSKTAHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVY 469

Query: 394 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 453
           +TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IM
Sbjct: 470 LTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIM 529

Query: 454 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 513
           NQSSIDRG FRSLFFRSY D+EK++G  V E+F +P+RSNT+ ++HG+Y+KLDDDGL  P
Sbjct: 530 NQSSIDRGLFRSLFFRSYMDQEKRVGMSVVEEFEKPNRSNTLRLKHGTYEKLDDDGLIAP 589

Query: 514 GTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGL 571
           G RVSGED+IIGKTTPI  D E  GQ + Y  +RD S  LR +E G+VDQVL+TTN +GL
Sbjct: 590 GIRVSGEDIIIGKTTPIPPDTEELGQRTVYHIKRDASTPLRSTENGIVDQVLITTNQEGL 649

Query: 572 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 631
           +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP++ EGI PD+I+NPHAIPSRM
Sbjct: 650 KFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRREDMPFSAEGIVPDLIINPHAIPSRM 709

Query: 632 TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
           T+  LIEC++ KV++  G EGDA+PFT+VTVD ISK L   GY  RGFE MYNGHTG++ 
Sbjct: 710 TVAHLIECLLSKVSSISGMEGDASPFTEVTVDAISKLLRDNGYHSRGFEVMYNGHTGKKT 769

Query: 692 TA 693
            A
Sbjct: 770 MA 771


>gi|396941891|gb|AFN89663.1| RNA polymerase II, partial [Millerozyma farinosa]
          Length = 782

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/734 (61%), Positives = 560/734 (76%), Gaps = 41/734 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRL 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ N   A+K++TIT GL+YSLATGNWG Q  A   RAGV
Sbjct: 109 LFRKLTKDIYNYMQRCVENDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P+  P+AT++FVNG WVG HR+P  LV+T
Sbjct: 229 SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPEATRVFVNGVWVGTHREPAHLVET 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV +VRDIR +E +I+TD GR  RPLFIV+       K  L +KK  +
Sbjct: 289 MRNLRRRGDISPEVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKDHV 348

Query: 293 IALQQRESPE--------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----- 339
             L   E  E        +  W  L+  G +EY+D EEEET MI+MT  DL  +R     
Sbjct: 349 NKLLNAEYDEFSDEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAMTPEDLEASRSSLSE 408

Query: 340 -----LHPEEAYAD-------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                L  EE  +D             T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 409 TQQKDLQLEEQESDPAKRIKPTFSGSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 468

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIAC
Sbjct: 469 QSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIAC 528

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 529 YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGT 588

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
           Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+V
Sbjct: 589 YEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIV 648

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD
Sbjct: 649 DQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPD 708

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVTV+ +SK L + GYQ RGF
Sbjct: 709 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTVEAVSKLLREHGYQSRGF 768

Query: 680 ETMYNGHTGRRLTA 693
           E MYNGHTG++L A
Sbjct: 769 EVMYNGHTGKKLMA 782


>gi|396941823|gb|AFN89629.1| RNA polymerase II, partial [Saccharomyces cerevisiae]
          Length = 770

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/721 (63%), Positives = 557/721 (77%), Gaps = 31/721 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 50  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 110 LFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 230 SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
           LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I 
Sbjct: 290 LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIA 349

Query: 294 ALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
            L   E  + +GG        W  L+ +G +EYID EEEE+ +I+M   DL  A  + E 
Sbjct: 350 KLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEN 409

Query: 345 A-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                         +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 410 DLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 469

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 470 VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 529

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL 
Sbjct: 530 IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 589

Query: 512 PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGEDVIIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN D
Sbjct: 590 APGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD 649

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GL+FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 650 GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPS 709

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ  GFE MYNGHTG+
Sbjct: 710 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSXGFEVMYNGHTGK 769

Query: 690 R 690
           +
Sbjct: 770 K 770


>gi|45545355|gb|AAS67525.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Ustilago maydis]
          Length = 887

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/734 (61%), Positives = 569/734 (77%), Gaps = 28/734 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+ T +   TKKAY+FGY+IHRLLL AL RR  DDRDH+G KR+DL GPL+  LFRM
Sbjct: 155 MLPHISTSEGSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRM 214

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRK+TRDV  ++QKCV+  ++ ++Q A+K+ TIT+GL+YSLATGNWG Q  A   +AGV
Sbjct: 215 LFRKVTRDVYRHLQKCVEEHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGV 274

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR  +ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 275 SQVLNRFAFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 334

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  +TVG+ + PI+EFLEE+G ++  ++  A   +ATKIFVNG W+G H DP  LV T
Sbjct: 335 SLMATVTVGTPSAPIVEFLEEFGLDSLVDMQLAH-AKATKIFVNGVWMGTHDDPGQLVDT 393

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ--RLLIKKRDIIALQQ 297
           LR LRR+ D++ EV VVRDIR +ELRIYTD  R  RP+FIV      LLIKKR +  + Q
Sbjct: 394 LRDLRRKDDISHEVSVVRDIRERELRIYTDASRVLRPVFIVNPHDMSLLIKKRHVEMIGQ 453

Query: 298 R--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----------LHPEEA 345
              E+ E+  W  LV +G IEY+D EEEE+ +I M+  DL Q+R          L+  + 
Sbjct: 454 PIPETGEEFRWTHLVQEGVIEYLDAEEEESVLICMSTTDLEQSREYKARNGQINLNSADP 513

Query: 346 YA----------DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
            A          DT+THCEIHP+++LG+CASI+PFPDHNQSPRN YQSAMGKQA+GI ++
Sbjct: 514 SARLKSVHTIAPDTWTHCEIHPAMVLGICASIVPFPDHNQSPRNVYQSAMGKQAIGIPIS 573

Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
           N Q R D++A+VL YPQKPL TTR+MEHL FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 574 NIQSRADSMAHVLLYPQKPLGTTRSMEHLRFRELPAGQNAIVAIMCYSGYNQEDSVIMNQ 633

Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
           SSIDRG FRS+++R Y  EEKK+G +  E+F +P R  T+ M+HG+YDK+D DGL  PGT
Sbjct: 634 SSIDRGLFRSMYYRGYMAEEKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLCAPGT 693

Query: 516 RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
           RVSG+DVIIGKT P+  D E  G  S+ +T++D S+SL+ +E G++DQVL+TTN+ G +F
Sbjct: 694 RVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASVSLKSTENGIIDQVLVTTNSHGNKF 753

Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
           VKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDMP++ EG+TPDII+NPHAIPSRMTI
Sbjct: 754 VKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTI 813

Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
           G L+EC++ KVAA  G+EGDATPFT++TV+ +S  L   GYQ RG E MY+GHTGR+L A
Sbjct: 814 GHLVECLLSKVAALSGQEGDATPFTELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKLQA 873

Query: 694 MIFLGPTYYQRLKH 707
            ++LGPTYYQRLKH
Sbjct: 874 QVYLGPTYYQRLKH 887


>gi|120561273|gb|ABM27021.1| RNA polymerase II second largest subunit, partial [Monoblepharis
           macrandra]
          Length = 879

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/729 (61%), Positives = 555/729 (76%), Gaps = 26/729 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+G     E +KA++ GY+IHRLLLCAL RR  DDRDH+G KRLDLAGPL+  LFRM
Sbjct: 155 LLPHIGIQARSEGRKAWFLGYMIHRLLLCALERREADDRDHFGKKRLDLAGPLMANLFRM 214

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFR+LT+D+   ++K V++ ++ N+  A++ + IT GL++SLATGNWG Q     TRAGV
Sbjct: 215 LFRRLTQDISRALRKAVESHREFNMVSAVQHQIITRGLQFSLATGNWGDQRKMMQTRAGV 274

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVL+R TYASTLSHLRRLNSPIGREGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 275 SQVLSRYTYASTLSHLRRLNSPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 334

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGS   P+++FL+EW  E+ EE+S   I    K+F+NG W+G+HR+PE L++ 
Sbjct: 335 ALMAYISVGSPVEPLVDFLQEWTLEDLEELSADDIRDKCKVFLNGVWIGVHRNPEELMRI 394

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            R  RR++ ++ EV  V D+R KELR  +D GR  RPLF+V   +L I+K  I  LQ   
Sbjct: 395 FRDYRRKISISAEVSAVWDVREKELRFLSDAGRICRPLFVVNNMQLEIRKGHIAKLQN-- 452

Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-------------------VQARL 340
             +   W DLV+ G +EY+DT+EEETTMI+M+ +DL                   V  RL
Sbjct: 453 --QTWKWGDLVSNGLVEYVDTDEEETTMIAMSFDDLRDSMIAAQGEEVMARSDWEVTERL 510

Query: 341 HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
                    +TH EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+Q R
Sbjct: 511 RGGTVLTRYWTHAEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFQLR 570

Query: 401 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
           MDT++ +LYYPQKPLVTTRAMEHLHFR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 571 MDTMSNILYYPQKPLVTTRAMEHLHFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDR 630

Query: 461 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
           G FRSL++R+Y D EKK+G    E F +P R  T+ MR  SYD L+DDG   PGTRVS  
Sbjct: 631 GLFRSLYYRAYMDSEKKLGIQQAETFEKPVRDATIKMRGTSYDTLEDDGFVAPGTRVSDG 690

Query: 521 DVIIGKTTPISQ--DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 578
           D++IGKT P+ +  +E   + +R+ ++D S ++R +ETG++DQV+L+T++ G   VKVR+
Sbjct: 691 DILIGKTVPLPKGSEELGARTARHEKKDASTTMRGAETGIIDQVMLSTDSQGQNMVKVRI 750

Query: 579 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 638
           RS RIPQ+GDKF+SRHGQKGTVG+TY  EDMP+T EGI PDII+NPHAIPSRMTIG L+E
Sbjct: 751 RSTRIPQMGDKFASRHGQKGTVGITYRHEDMPFTAEGICPDIIINPHAIPSRMTIGHLVE 810

Query: 639 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 698
           C++GKV+A  G+EGDATPF + TV  IS AL   GYQ RG+E +YNGHTGR+L A IFLG
Sbjct: 811 CLLGKVSALAGEEGDATPFMETTVGAISSALKGLGYQQRGYEVLYNGHTGRKLQAQIFLG 870

Query: 699 PTYYQRLKH 707
           PTYYQRLKH
Sbjct: 871 PTYYQRLKH 879


>gi|83415479|gb|ABC17947.1| RNA polymerase II second largest subunit, partial [Zancudomyces
           culisetae]
          Length = 718

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/717 (62%), Positives = 556/717 (77%), Gaps = 21/717 (2%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFR LF+K+TRD+  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAMLFRNLFKKMTRDMTRYLQKCIESRREFNLSMALKSNTITAGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A  +R GV+QVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAMQSRTGVAQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM +ITVGS +  IL FLEEW  EN EE+    +  +TKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMAHITVGSDSGSILMFLEEWAMENLEELVGDSLADSTKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVGIH++   L  TL++LRRR++ + E+ +V D+R +E+RI TD GR  RPLF+V   
Sbjct: 182 GVWVGIHKEAVRLAATLKQLRRRLEFSYELSIVHDVREREIRILTDAGRVCRPLFVVNHM 241

Query: 284 RLLIKKRDIIALQQRESPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-- 339
           RL + K  + A++ R   E     WHDL+++G +EY+D EEEET MI M+ ++L ++R  
Sbjct: 242 RLALTKPVVAAIEARRLGERDAVRWHDLLSEGIVEYLDAEEEETAMIVMSPHELDESRRF 301

Query: 340 -----LHPEE---------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
                L P++             T+THCEIHPS+ILG+CASI+PFPDHNQSPRNTYQSAM
Sbjct: 302 VHTGQLPPKDDGRIRSRRNIGITTWTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAM 361

Query: 386 GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
           GKQAMGI +TNYQ RMDTLA +LYYPQKPL TT AME++ F +LPAG NAIVAI CY+GY
Sbjct: 362 GKQAMGILLTNYQVRMDTLANLLYYPQKPLATTHAMEYIKFSELPAGQNAIVAILCYTGY 421

Query: 446 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
           NQEDS+IMNQSSIDRG FRS+FFRSY DEE K+G      F +P R++T+ ++ G+Y+KL
Sbjct: 422 NQEDSLIMNQSSIDRGLFRSIFFRSYMDEEDKLGMRTMGRFEKPSRASTLRLKIGTYEKL 481

Query: 506 DDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVL 563
           DDDGL  PGTRV+G+D+IIGKTTPI  +  E   +   +T+ D S  LR +E+G+VDQVL
Sbjct: 482 DDDGLIAPGTRVTGDDIIIGKTTPIPIASLELGQRTLAHTKLDASKPLRATESGIVDQVL 541

Query: 564 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
           L TN DG +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+ YT EDMP+T +GI PD+I+N
Sbjct: 542 LXTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGTIGIVYTSEDMPFTADGIVPDLIIN 601

Query: 624 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
           PHAIPSRMTIG LIEC++ K+A  +G   DA+PFTDVTVD IS  L   GY  RG E MY
Sbjct: 602 PHAIPSRMTIGHLIECLLSKLATLVGTAADASPFTDVTVDAISAELFSLGYHSRGLEVMY 661

Query: 684 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           NGH+GR+L + +F GPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDGGLRF
Sbjct: 662 NGHSGRKLYSQVFFGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 718


>gi|40643888|emb|CAD88887.1| DNA-directed RNA polymerase subunit B [Fagonia lahovarii]
          Length = 484

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/484 (94%), Positives = 473/484 (97%)

Query: 256 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 315
           VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI+ALQQRESPEDGGWHDLVAKGFI
Sbjct: 1   VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIVALQQRESPEDGGWHDLVAKGFI 60

Query: 316 EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           EYIDTEEEETTMISMTINDL+QAR +PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 61  EYIDTEEEETTMISMTINDLIQARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 120

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV TRAMEHLHFRQLPAGINA
Sbjct: 121 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVXTRAMEHLHFRQLPAGINA 180

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
            VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTM
Sbjct: 181 XVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 240

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE 555
           GMRHGSY+KLD DGLAPPGTRVSGEDVIIGKTTPIS + AQG A+R TRRDHSISLRHSE
Sbjct: 241 GMRHGSYEKLDGDGLAPPGTRVSGEDVIIGKTTPISXEXAQGAAARXTRRDHSISLRHSE 300

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
           TG+VDQVLLTTNADGLR VKVRV SVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPWT+EG
Sbjct: 301 TGIVDQVLLTTNADGLRXVKVRVXSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTMEG 360

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           ITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGD TPFTDVTVDNISKALHKCGYQ
Sbjct: 361 ITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDXTPFTDVTVDNISKALHKCGYQ 420

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 735
           MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 421 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 480

Query: 736 GGLR 739
           GGLR
Sbjct: 481 GGLR 484


>gi|396941920|gb|AFN89677.1| RNA polymerase II, partial [Candida blankii]
          Length = 771

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/722 (63%), Positives = 559/722 (77%), Gaps = 37/722 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  E +KA++ GY++HR+LL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 50  LLPHITQEEGYENRKAFFLGYMVHRMLLVALERREPDDRDHFGKKRLDLAGPLLANLFRM 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  TRAGV
Sbjct: 110 LFKKLTRDIYRYLQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GK+A+PRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTFSSTLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + PI+ FLEEWG E  E+  P   P AT++FVNG W+G+HRDP  LV T
Sbjct: 230 SLMSCISVGSPSQPIVYFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGVHRDPATLVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
           +R LRR+ D++ EV ++RDIR KE RI+TD GR  RPLF+V+       K  L ++K   
Sbjct: 290 MRALRRKGDISPEVSIIRDIREKEFRIFTDAGRVYRPLFLVDNDEDSPYKGELKLRKDHV 349

Query: 290 RDIIALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR------ 339
           R++I +++    E G     W  LV  G +EYID EEEET MI+MT  DL  +R      
Sbjct: 350 RELIRMEEEGDMETGEPVSTWSSLVNNGIVEYIDGEEEETVMIAMTPEDLEVSRQMQAGQ 409

Query: 340 --LHPE---------EAY---ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 385
             L  E         +AY   A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM
Sbjct: 410 EILEEEDPDPARRVKQAYNPNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM 469

Query: 386 GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 445
           GKQAMG+++TNY  RMDT++ +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGY
Sbjct: 470 GKQAMGVFLTNYSVRMDTMSNILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGY 529

Query: 446 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 505
           NQEDSVIMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKL
Sbjct: 530 NQEDSVIMNQSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKL 589

Query: 506 DDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVL 563
           DDDGL PPG RVSGED+IIGKT PI  D E  GQ +++ T+RD S  LR +E+G+VDQV+
Sbjct: 590 DDDGLIPPGVRVSGEDIIIGKTAPIPPDTEELGQRTKFHTKRDASTPLRSTESGIVDQVV 649

Query: 564 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 623
           LTTN +GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+N
Sbjct: 650 LTTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIIN 709

Query: 624 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 683
           PHAIPSRMT+  LIEC++ KV+A  G EGDATPFTDVTVD ISK L + GYQ RGFE M 
Sbjct: 710 PHAIPSRMTVAHLIECLLSKVSALSGLEGDATPFTDVTVDAISKLLREHGYQSRGFEVMX 769

Query: 684 NG 685
           NG
Sbjct: 770 NG 771


>gi|120561267|gb|ABM27018.1| RNA polymerase II second largest subunit, partial [Entophlyctis
           confervae-glomeratae]
          Length = 886

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/733 (62%), Positives = 568/733 (77%), Gaps = 28/733 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHV      +T+KA++FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 156 MLPHVSMESHHQTRKAFFFGYMIHRLLLAALERRPLDDRDHFGRKRLDLAGPLLSSLFRT 215

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT DV  Y +K V+ G + NL  A+K+ TIT GL+YSLATGNWG Q      +AGV
Sbjct: 216 LFRKLTTDVSRYTKKIVETGGEFNLAMALKSATITKGLQYSLATGNWGDQKKFMSAKAGV 275

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRRLN+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 276 SQVLNRYTYASTLSHLRRLNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 335

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM +I+VG+ A  +L +L E+G E  E+I P+++P+ATK+F+NG W+GIH +PE LVKT
Sbjct: 336 SLMSHISVGNDAKIVLPYLGEFGMETLEDIQPSMLPKATKVFLNGQWLGIHHEPETLVKT 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQR 298
           LR LRR  D++TE+ +VRD+  KE+R+ TDYGR  RPL IV E   L I K   +A   R
Sbjct: 396 LRDLRRSADISTELSIVRDVSDKEVRLQTDYGRIMRPLLIVKEDYHLAITKG--MARDLR 453

Query: 299 ESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDL------------------V 336
              E G     W DL++ G +EY+DTEEEET MI+M + D+                  +
Sbjct: 454 PDVETGASALVWGDLLSSGAVEYLDTEEEETVMIAMDVEDVKRVRTERYGEVFVRPPQDI 513

Query: 337 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
            ARL  + AYA  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN
Sbjct: 514 TARLKSKAAYARRFTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTN 573

Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
           YQ RMDT+A +L+YPQKPL TTRAM+ +HFR+LPAG NAIVAI+ YSGYNQEDS+IMNQS
Sbjct: 574 YQLRMDTMANILFYPQKPLATTRAMQFMHFRELPAGQNAIVAISTYSGYNQEDSLIMNQS 633

Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
           SIDRG FRS+++R Y D EKK+G +  E   +PDR + + ++HGSY K+D DGL  PGTR
Sbjct: 634 SIDRGLFRSMYYRVYMDTEKKIGMIDSETIEKPDREDCLRLKHGSYHKIDSDGLIAPGTR 693

Query: 517 VSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
           VSGED+IIGKT PI +D ++ GQ  + +T+RD S  ++ +E G+VDQV+LTTN  G +FV
Sbjct: 694 VSGEDIIIGKTVPIKEDSSEMGQRTAAHTKRDASTPMKSTENGIVDQVMLTTNEAGYKFV 753

Query: 575 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
           KVRVRSVR+PQ+GDKF+SRHGQKGTVG+TY  EDMP++ EG++PD++VNPHAIPSRMTIG
Sbjct: 754 KVRVRSVRVPQMGDKFASRHGQKGTVGITYRMEDMPFSGEGLSPDLVVNPHAIPSRMTIG 813

Query: 635 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
            L+EC++ K++   G EGDA+PFTDVTVD ISK+L   GYQ RGFE +YNGHTGR+L A 
Sbjct: 814 HLVECLLSKLSTFTGIEGDASPFTDVTVDQISKSLESFGYQKRGFEVLYNGHTGRKLQAQ 873

Query: 695 IFLGPTYYQRLKH 707
           ++ GPTYYQRLKH
Sbjct: 874 VYFGPTYYQRLKH 886


>gi|410610273|gb|AFV74905.1| RNA polymerase II second largest subunit, partial [Santalum album]
          Length = 486

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/486 (95%), Positives = 479/486 (98%)

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHRDP+MLV+TLRRLRRRVDVNTEVGVVRDIRL+ELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 1   WVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLRELRIYTDYGRCSRPLFIVEKQRL 60

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIKK+DI ALQQRE+ E+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 61  LIKKKDIQALQQRETAEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEA 120

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y++ YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 121 YSEMYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 180

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 181 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 240

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           LFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 241 LFFRSYRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 300

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KT+PI+QDE+QGQASRYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 301 KTSPIAQDESQGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQ 360

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKFSSRHGQKGTVGMTYT EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 361 IGDKFSSRHGQKGTVGMTYTXEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 420

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 421 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 480

Query: 706 KHMVDD 711
           KHMVDD
Sbjct: 481 KHMVDD 486


>gi|396941887|gb|AFN89661.1| RNA polymerase II, partial [Scheffersomyces stipitis]
          Length = 783

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/735 (61%), Positives = 560/735 (76%), Gaps = 42/735 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HRDP  LV T
Sbjct: 229 SLMTCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHRDPANLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +
Sbjct: 289 MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDEAESETKGDLKLQKEHV 348

Query: 293 IAL-----QQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQA----- 338
             L      + E P++ G    W  L+  G +EY+D EEEET MI+MT  DL  +     
Sbjct: 349 HNLLSSEYDEYEDPDNEGASYTWSSLINDGVVEYVDAEEEETIMIAMTPEDLEASKNAIT 408

Query: 339 -----------------RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                            R+ P   A   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 409 ETPDKSVLEEQELDPAKRIKPTFSAATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT 468

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIA
Sbjct: 469 YQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIA 528

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG
Sbjct: 529 CYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHG 588

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
           +Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 589 TYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGI 648

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI P
Sbjct: 649 VDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVP 708

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RG
Sbjct: 709 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRG 768

Query: 679 FETMYNGHTGRRLTA 693
           FE MYNGHTG++L A
Sbjct: 769 FEVMYNGHTGKKLMA 783


>gi|396941895|gb|AFN89665.1| RNA polymerase II, partial [Yamadazyma philogaea]
          Length = 782

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/735 (61%), Positives = 558/735 (75%), Gaps = 42/735 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +   T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 48  LLPNITQEEGFATRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 107

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRD+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 108 LFRKLTRDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 167

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 168 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 227

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+++ PIL FLEEWG E  E+ SP+  P +T++FVNG WVG HRDP  LV T
Sbjct: 228 SLMSCISVGTSSEPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPASLVDT 287

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR+ D+  EV ++RD+R +E +I+TD GR  RPLFIV+       K  L++ K  I
Sbjct: 288 IRSLRRKGDIAPEVSIIRDVREREFKIFTDAGRVYRPLFIVDDNPYSETKGELMLNKTHI 347

Query: 293 IALQQRE--------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV-------- 336
             L   E          E  GW  LV +G IEY+D EEEET MI+MT  DL         
Sbjct: 348 KKLMDSEYDEFSYDDEQEAYGWSSLVNEGVIEYVDAEEEETIMIAMTPEDLEASKSTLSE 407

Query: 337 --QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
             Q  +  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 408 TEQKSMQMEEQERDPAKRIKPTYTGSLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT 467

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIA
Sbjct: 468 YQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIA 527

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG
Sbjct: 528 CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHG 587

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
           +Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 588 TYEKLDDDGLITPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGI 647

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI P
Sbjct: 648 VDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGIVP 707

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RG
Sbjct: 708 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEEISKLLREHGYQSRG 767

Query: 679 FETMYNGHTGRRLTA 693
           FE MY+GHTG+++ A
Sbjct: 768 FEVMYHGHTGKKMMA 782


>gi|6606097|gb|AAF19061.1|AF107789_1 DNA-dependent RNA polymerase II RPB140 [Neurospora crassa]
          Length = 903

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/746 (60%), Positives = 566/746 (75%), Gaps = 39/746 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   + CET+KA++ GY++H+LL C LGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 158 LLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRG 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           + R+LT+D+  Y+++CVD  K  +L   IKA T+T+GLKYSLATGNWG Q  A  + AGV
Sbjct: 218 IVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 278 SQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM +++VG+ A PI+EF+     E  EE  P   P ATK+FVNG WVG+H+DP+ LV  
Sbjct: 338 SLMCFVSVGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTL 397

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKK 289
           ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF+VE++          +L++ K
Sbjct: 398 VQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTK 457

Query: 290 RDIIALQQRES----PED-GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP-- 342
             I  L+Q +      ED  GW  L+  G IEY+D EEEET MI MT  DL   R H   
Sbjct: 458 EHIRRLEQDKELAKYHEDYFGWQGLLESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFK 517

Query: 343 ----EEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
               E+  A+                YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQS
Sbjct: 518 GREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQS 577

Query: 384 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
           AMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYS
Sbjct: 578 AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYS 637

Query: 444 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
           GYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +PDRSNT+  +HG+YD
Sbjct: 638 GYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYD 697

Query: 504 KLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQ 561
           KL++DG+  PG RV+G+D+IIGKT+PI+ D  + GQ  +++ +RD S  LR +E+G+VD 
Sbjct: 698 KLENDGIIAPGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDS 757

Query: 562 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
           V  TTN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII
Sbjct: 758 VAFTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDII 817

Query: 622 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
           +NPHAIPSRMTI  LIEC++ KV A  G EGDATPFTDVTVD++S  L + GYQ RGFE 
Sbjct: 818 INPHAIPSRMTIAHLIECLLSKVGALKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEI 877

Query: 682 MYNGHTGRRLTAMIFLGPTYYQRLKH 707
           MY+GHTG++L A +F GPTYYQRL+H
Sbjct: 878 MYHGHTGKKLRAQVFFGPTYYQRLRH 903


>gi|83415473|gb|ABC17944.1| RNA polymerase II second largest subunit, partial [Conidiobolus
           coronatus]
          Length = 727

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/726 (62%), Positives = 565/726 (77%), Gaps = 30/726 (4%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+DLAGPLL  LF++LF K  +D+  Y+QKC+D+ ++ N+  A+K  TIT+GLKYSLAT
Sbjct: 2   KRMDLAGPLLTQLFKVLFAKFNKDLAKYLQKCIDSNREFNMNMAVKPNTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+L+ +++VGS A  I  +L ++ TE+ E+       + TKIF+N
Sbjct: 122 PAETPEGQACGLVKNLSLLAHVSVGSPADGINSYLNDYYTESLEQSQHFRDIRGTKIFLN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+H D   LVK L+ LR RVD++ E+ VVRDIR +E+ I+TD GR  RPLF+V++ 
Sbjct: 182 GDWIGMHNDGPRLVKILKALRCRVDLSPEISVVRDIRDREVHIFTDAGRVCRPLFVVDEC 241

Query: 284 RLLIKKR--DIIALQQRESPEDGGWHDLVA------KGFIEYIDTEEEETTMISMTINDL 335
           +LL+ KR  +++ LQ++    D     +        K  ++YI  +EEET +I M+  DL
Sbjct: 242 KLLLTKRHIELLKLQEKLDSFDDQKTSMSVQDREKIKNQMQYIGADEEETCLICMSYEDL 301

Query: 336 VQARL-------HPEE-------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           + A+         P+               Y+  +THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 302 LDAKYFFDHHQPRPKNITDFSARVTMDMGVYSTKWTHCEIHPSMILGICASIIPFPDHNQ 361

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY++NYQ RMDTLA +LYYPQKPLV TR+ME+L FR+LPAG NA
Sbjct: 362 SPRNTYQSAMGKQAMGIYLSNYQLRMDTLANILYYPQKPLVATRSMEYLRFRELPAGQNA 421

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIMNQSSIDRG FRS+F+R+Y D+EK++G+   E F +P R +T+
Sbjct: 422 IVAILCYSGYNQEDSVIMNQSSIDRGLFRSMFYRTYMDQEKQVGSKKLEIFEKPTRESTL 481

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASRYTRRDHSISLRHS 554
            ++HG+Y+KL+DDGL  PG RVSG+D+IIGKT PI   DE  GQ + +T+RD S  LR +
Sbjct: 482 RLKHGTYEKLEDDGLIAPGIRVSGDDIIIGKTVPIPDDDEELGQRTNHTKRDASTPLRST 541

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           ETG+VDQV+LTTN DGL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+T +
Sbjct: 542 ETGIVDQVMLTTNNDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDMPFTAD 601

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           G+TPD+I+NPHAIPSRMTIG L+EC++GKV   +G EGDATPFTDVTVD+ISK L   GY
Sbjct: 602 GLTPDLIINPHAIPSRMTIGHLVECLLGKVGTMLGAEGDATPFTDVTVDSISKQLELRGY 661

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
           Q RGFE MYNGHTGR+LTA ++ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSR
Sbjct: 662 QKRGFEVMYNGHTGRKLTAQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSR 721

Query: 735 DGGLRF 740
           DGGLRF
Sbjct: 722 DGGLRF 727


>gi|396941881|gb|AFN89658.1| RNA polymerase II, partial [Debaryomyces hansenii]
          Length = 781

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/733 (61%), Positives = 560/733 (76%), Gaps = 40/733 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+++ PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 229 SLMSCISVGTSSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L +KK ++
Sbjct: 289 MRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDAESETKGELKLKKENV 348

Query: 293 IALQQRESPEDG--------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----- 339
             L   E  + G         W  LV  G +EY+D EEEET MI+MT  DL  +R     
Sbjct: 349 HKLINAEYDDFGDDPDSLSYSWSSLVNDGIVEYVDAEEEETIMIAMTPEDLETSRSTLSE 408

Query: 340 -----LHPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                +  EE   D            T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQ
Sbjct: 409 TEQKDMQLEEQEVDPAKRIKPTLGLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQ 468

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACY
Sbjct: 469 SAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACY 528

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ +RHG+Y
Sbjct: 529 SGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLRHGTY 588

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVD 560
           +KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VD
Sbjct: 589 EKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGIVD 648

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD+
Sbjct: 649 QVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVPDL 708

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE
Sbjct: 709 IINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFE 768

Query: 681 TMYNGHTGRRLTA 693
            MYNGHTG++L A
Sbjct: 769 VMYNGHTGKKLMA 781


>gi|396941883|gb|AFN89659.1| RNA polymerase II, partial [Schwanniomyces occidentalis]
          Length = 776

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/728 (62%), Positives = 556/728 (76%), Gaps = 35/728 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++T T GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTXTDGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 229 SLMTCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +
Sbjct: 289 MRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHV 348

Query: 293 IAL------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLH 341
             L      +  E  E   W  LV  G +EY+D EEEET MI+MT  DL       A   
Sbjct: 349 HKLLSSEYDEYDEDSESYTWSSLVNDGIVEYVDAEEEETIMIAMTPEDLEASKSAIAESQ 408

Query: 342 PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
           P+E   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 409 PQEQELDPAKRIKPTFSGSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGK 468

Query: 388 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 447
           QAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQ
Sbjct: 469 QAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQ 528

Query: 448 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 507
           EDS+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG+Y+KLDD
Sbjct: 529 EDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDD 588

Query: 508 DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLT 565
           DGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLT
Sbjct: 589 DGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLT 648

Query: 566 TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 625
           TN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPH
Sbjct: 649 TNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGIVPDLIINPH 708

Query: 626 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 685
           AIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYNG
Sbjct: 709 AIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYNG 768

Query: 686 HTGRRLTA 693
           HTG++L A
Sbjct: 769 HTGKKLMA 776


>gi|396941899|gb|AFN89667.1| RNA polymerase II, partial [Yamadazyma scolyti]
          Length = 783

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/735 (62%), Positives = 554/735 (75%), Gaps = 42/735 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +   T+KA++ G +++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFATRKAFFLGXMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRD+  Y+Q+CV+N K  NL  A+K++TIT GL+YS ATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLTRDIYNYMQRCVENDKVFNLTLAVKSQTITDGLRYSXATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS++ PIL FLEEWG E  E+ SPA  P  T++FVNG WVG HRDP  LV T
Sbjct: 229 SLMSCISVGSSSEPILVFLEEWGLEPLEDYSPATSPDTTRVFVNGVWVGTHRDPASLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR+ D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  LL+ K  I
Sbjct: 289 IRSLRRKGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPSSETKGELLLNKTHI 348

Query: 293 IALQQRE--------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--------- 335
             L   E          E  GW  LV  G IEY+D EEEET MI+MT  DL         
Sbjct: 349 KKLMDSEYDDYNYDDEQETYGWSSLVRDGIIEYVDAEEEETIMIAMTPEDLEASKSSLSE 408

Query: 336 -VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
             Q  +  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 409 TQQKTIQMEEQERDPAKRIKPTYSGNLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT 468

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIA
Sbjct: 469 YQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIA 528

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG
Sbjct: 529 CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHG 588

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
           +Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 589 TYEKLDDDGLITPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGI 648

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI P
Sbjct: 649 VDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGIVP 708

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RG
Sbjct: 709 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEEISKLLREHGYQSRG 768

Query: 679 FETMYNGHTGRRLTA 693
           FE MYNGHTG++L A
Sbjct: 769 FEVMYNGHTGKKLMA 783


>gi|396941943|gb|AFN89688.1| RNA polymerase II, partial [Komagataella pastoris]
          Length = 771

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/731 (61%), Positives = 557/731 (76%), Gaps = 38/731 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+K ++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 41  LLPHITQEEGFETRKTFFLGYMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRI 100

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTR++  Y+Q+C++  +D NL  A+K+ TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 101 LFRKLTREIYRYMQRCIETDRDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGV 160

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 161 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 220

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +L+  I++GS + PI+ FLEEWG E  E+  PA   ++T+IFVNG W GIHRDP MLV T
Sbjct: 221 SLLSGISIGSPSEPIINFLEEWGMEPLEDYDPAQHTRSTRIFVNGVWTGIHRDPSMLVST 280

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR   ++ EV ++RDIR +E +I+TD GR  RPLFIVE       K  L I K  I
Sbjct: 281 MRDLRRSGAISPEVSIIRDIREREFKIFTDVGRVYRPLFIVEDDESKDNKGELRITKEHI 340

Query: 293 IALQQ-----------RESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
             +QQ            E  +D  GW  LV  G IEY+D EEEET MI+MT  DL     
Sbjct: 341 RKIQQGYDDDAMNDDSEEQEQDVYGWSSLVTSGVIEYVDGEEEETIMIAMTPEDLQTRSL 400

Query: 336 ---------VQARLHPEEAYAD--TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
                       R+ PE + +   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSA
Sbjct: 401 EQKESDLNDTAKRIKPEMSTSSHHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSA 460

Query: 385 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
           MGKQAMG+++TNY  RMDT+A +LYYPQKPL  T+AME+L FR+LPAG NAIVAIACYSG
Sbjct: 461 MGKQAMGVFLTNYNVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAIACYSG 520

Query: 445 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
           YNQEDS+IMNQSSIDRG FRSLFFRSY D+EK+ G  + E+F +P R+ T+ ++HG+Y+K
Sbjct: 521 YNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKRFGISIVEEFEKPTRATTLRLKHGTYEK 580

Query: 505 LDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQV 562
           LD+DGL  PG RVSG+D+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E G+VDQV
Sbjct: 581 LDEDGLIAPGVRVSGDDIIIGKTTPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQV 640

Query: 563 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 622
           LLTTN +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+
Sbjct: 641 LLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLII 700

Query: 623 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 682
           NPHAIPSRMT+  LIEC++ KV +  G EGDATPFTD+TVD +S  L   GYQ RGFE M
Sbjct: 701 NPHAIPSRMTVAHLIECLLSKVGSIRGYEGDATPFTDLTVDAVSNLLRDNGYQSRGFEVM 760

Query: 683 YNGHTGRRLTA 693
           YNGHTG++L A
Sbjct: 761 YNGHTGKKLMA 771


>gi|396941875|gb|AFN89655.1| RNA polymerase II, partial [Kurtzmaniella cleridarum]
          Length = 781

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/734 (61%), Positives = 559/734 (76%), Gaps = 41/734 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KAY+ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 48  LLPHITQEEGFETRKAYFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 107

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 108 LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 167

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 168 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 227

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+++ PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 228 SLMSCISVGTSSEPILYFLEEWGMEPLEDYVPSTSPDSTRVFVNGVWVGTHREPSQLVDT 287

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLF+V+          L ++K +I
Sbjct: 288 MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDPESETHGELKLQKENI 347

Query: 293 IALQQRES---PEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDL---------- 335
             L   E     ED      W  L+  G +EY+D EEEET MI+M+  DL          
Sbjct: 348 HKLLNSEYGDYDEDSENMYNWTSLLNDGVVEYVDAEEEETIMIAMSPEDLEASKVSLTEQ 407

Query: 336 VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            Q +L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 408 QQKKLQEEEIDLDPAKRIKTTSHGNSLTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 467

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIAC
Sbjct: 468 QSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIAC 527

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 528 YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLKHGT 587

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
           Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+V
Sbjct: 588 YEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIV 647

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD
Sbjct: 648 DQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSGQGIVPD 707

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGF
Sbjct: 708 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEQISKLLREHGYQSRGF 767

Query: 680 ETMYNGHTGRRLTA 693
           E MY+GHTG++L A
Sbjct: 768 EVMYHGHTGKKLMA 781


>gi|396941873|gb|AFN89654.1| RNA polymerase II, partial [Candida multigemmis]
          Length = 779

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/731 (61%), Positives = 558/731 (76%), Gaps = 38/731 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KAY+ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFETRKAYFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL++D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLSKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 229 SLMTCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I
Sbjct: 289 MRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHI 348

Query: 293 IALQQRE------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV---------- 336
             L   E        E  GW  LV+ G +EY+D EEEET MI+MT +DL           
Sbjct: 349 HKLLNSEYDEFDEDSESYGWSSLVSDGIVEYVDAEEEETIMIAMTPDDLESNKSTLSPDE 408

Query: 337 QARLHPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
           Q  L  EE   D            T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSA
Sbjct: 409 QKMLQLEEQELDPAKRIKPTYNSHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSA 468

Query: 385 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
           MGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI+CYSG
Sbjct: 469 MGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAISCYSG 528

Query: 445 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
           YNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+K
Sbjct: 529 YNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEK 588

Query: 505 LDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQV 562
           LDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQV
Sbjct: 589 LDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQV 648

Query: 563 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 622
           LLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+
Sbjct: 649 LLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFSSQGIVPDLII 708

Query: 623 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 682
           NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE M
Sbjct: 709 NPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTTEAVSKLLREHGYQSRGFEVM 768

Query: 683 YNGHTGRRLTA 693
           YNGHTG++L A
Sbjct: 769 YNGHTGKKLMA 779


>gi|103001984|gb|ABF71530.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 719

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/717 (63%), Positives = 550/717 (76%), Gaps = 40/717 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+
Sbjct: 1   DDRDHFGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  R
Sbjct: 181 NATKVFVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCR 240

Query: 276 PLFIVEKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEY 317
           PLF+++          L++ K         +D+ A    E  E    GW  LV  G +EY
Sbjct: 241 PLFVIDNDPKSTNCGNLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEY 300

Query: 318 IDTEEEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPS 358
           +D EEEET MI MT  DL  +R                     P    A T+THCEIHPS
Sbjct: 301 VDAEEEETVMIVMTPEDLEISRQIQAGYAMPETSDDLNKRVKAPMNPTAHTWTHCEIHPS 360

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TT
Sbjct: 361 MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATT 420

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++
Sbjct: 421 RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRI 480

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 537
           G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  G
Sbjct: 481 GMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELG 540

Query: 538 QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           Q ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 541 QRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 600

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATP
Sbjct: 601 KGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 660

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           FT+VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 FTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 717


>gi|396941833|gb|AFN89634.1| RNA polymerase II, partial [Lachancea thermotolerans]
          Length = 773

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/726 (62%), Positives = 564/726 (77%), Gaps = 34/726 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 49  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRD+  ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMTSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T
Sbjct: 229 SLMSCISVGTDPLPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPAKLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
           +R+LRR+ DV +EV +VRDIR KEL+I+TD GR  RPLFIV++      + L ++K  I 
Sbjct: 289 IRKLRRKGDVTSEVSIVRDIREKELKIFTDAGRVYRPLFIVDENEETGVKELKLRKGHIR 348

Query: 294 ALQQRESPE-DGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARL 340
            L   E  + +GG         W  L+ +G +EYID EEEET +I+M   DL   ++A  
Sbjct: 349 KLMMTEYQDIEGGFEEEDINYTWSSLLNEGLVEYIDAEEEETILIAMQHEDLDPTIEA-A 407

Query: 341 HPEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
            PEE            ++ T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 408 DPEEELDPAKRIKAIHHSSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 467

Query: 390 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
           MG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 468 MGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQED 527

Query: 450 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
           S+IMNQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDDG
Sbjct: 528 SMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPQRTNTLRMKHGTYDKLDDDG 587

Query: 510 LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTN 567
           L  PG RVSG+D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TTN
Sbjct: 588 LIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTN 647

Query: 568 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
            +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHAI
Sbjct: 648 QEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAI 707

Query: 628 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
           PSRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGHT
Sbjct: 708 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHT 767

Query: 688 GRRLTA 693
           G++L A
Sbjct: 768 GKKLMA 773


>gi|94410934|gb|ABF18585.1| RNA polymerase II second largest subunit, partial [Hygrophorus
           pudorinus]
          Length = 691

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/692 (65%), Positives = 547/692 (79%), Gaps = 26/692 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV++ K+ NL  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLALAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSQTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
            Q+L ++K+ +  L Q    +DG    W  L+  G IE +D EEEET MISMT  DL  +
Sbjct: 240 NQQLALQKKHVKWLNQGYRDDDGEEYKWEQLIKGGIIELLDAEEEETVMISMTPEDLENS 299

Query: 339 RLH-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           RL      P E   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 300 RLQQSGQDPHENDGDFDPAVRLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 359

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360 TYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+H
Sbjct: 420 LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRMKH 479

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G
Sbjct: 480 GTYDKLEDDGLIAPGTGVIGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENG 539

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVL+TTN++G +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 540 IVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITYGQEDMPFTAEGIV 599

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ R
Sbjct: 600 PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSR 659

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           G E M++GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660 GLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMV 691


>gi|396941885|gb|AFN89660.1| RNA polymerase II, partial [Schwanniomyces etchellsii]
          Length = 782

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/734 (61%), Positives = 560/734 (76%), Gaps = 41/734 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++T+T GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTVTDGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HRDP  LV T
Sbjct: 229 SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHRDPAHLVAT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRRR D++ EV ++RDIR KE RI+TD GR  RPLFIV+       K  L +KK  +
Sbjct: 289 MKNLRRRGDISPEVSIIRDIREKEFRIFTDAGRVYRPLFIVDDDPDSETKGDLKLKKEHV 348

Query: 293 IAL------QQRESPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDL--------- 335
             L      +  E PE+    W  LV  G +EY+D EEEE+ MI+MT +DL         
Sbjct: 349 NKLINAEYDEFNEDPENVSYSWSSLVNDGVVEYVDAEEEESIMIAMTPDDLEANKSSLSE 408

Query: 336 -------VQ-------ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                  +Q        R+ P  +   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 409 TQQMDLQIQEQEIDPAKRIKPTFSGHHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 468

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIAC
Sbjct: 469 QSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIAC 528

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 529 YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGT 588

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
           Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y  +RD S  LR +E+G+V
Sbjct: 589 YEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHVKRDASTPLRSTESGIV 648

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD
Sbjct: 649 DQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPD 708

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGF
Sbjct: 709 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTTEAISKLLREHGYQSRGF 768

Query: 680 ETMYNGHTGRRLTA 693
           E MYNGHTG++L A
Sbjct: 769 EVMYNGHTGKKLMA 782


>gi|396941789|gb|AFN89612.1| RNA polymerase II, partial [Barnettozyma populi]
          Length = 775

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/726 (62%), Positives = 556/726 (76%), Gaps = 41/726 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPL+  LFR+
Sbjct: 50  FLPHITQREGFESRKAFFLGYMVNRLLLCALDRKEQDDRDHFGKKRLDLAGPLMTNLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRD+  Y+Q+ V+ G D NL+ A+KA TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTRDIYRYMQRSVETGVDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ +  +LEFL+EWG E  EE  P   P  T+IFVNG W GIH DP  LV+T
Sbjct: 230 SLMTCISVGTESQEVLEFLDEWGIEPLEEYMPHQRPDVTRIFVNGVWHGIHDDPARLVET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR------LLIKKRDII 293
           +R +RR+ D++ E+ ++RDIR KEL+++TD GR  RPLFIV++        L +KK D+ 
Sbjct: 290 MRSMRRKGDLSPEISIIRDIREKELKVFTDAGRVYRPLFIVDENHETNSKDLALKKEDVE 349

Query: 294 ALQQRESP---------------EDG----GWHDLVAKGFIEYIDTEEEETTMISMTIND 334
            L+  E                 ED     GW  L+  G +EY+D EEEET MI+M+  D
Sbjct: 350 RLRDTEETIAEISEKKRNNEFIDEDQTDLYGWESLLRSGIVEYVDAEEEETIMIAMSHED 409

Query: 335 LVQARLHPEEAY-------------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
           L       E+               A TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 410 LEPPNDEEEDVIDTNKRIKTAFHKSAHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 469

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+Y+TNY +RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIAC
Sbjct: 470 QSAMGKQAMGVYLTNYSYRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIAC 529

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+EK++G  V E+F +P+RSNT+ ++HG+
Sbjct: 530 YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKRVGMSVVEEFEKPNRSNTLRLKHGT 589

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS-RYTRRDHSISLRHSETGMV 559
           Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ +  +T+RD S  LR +E G+V
Sbjct: 590 YEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTVHHTKRDASTPLRSTENGIV 649

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVL+TTN +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD
Sbjct: 650 DQVLITTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRREDMPFTAEGIVPD 709

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVTVD IS+ L + GYQ RGF
Sbjct: 710 LIINPHAIPSRMTVAHLIECLLSKVSSLSGHEGDASPFTDVTVDAISRLLREHGYQSRGF 769

Query: 680 ETMYNG 685
           E MYNG
Sbjct: 770 EVMYNG 775


>gi|396941835|gb|AFN89635.1| RNA polymerase II, partial [Kluyveromyces marxianus]
          Length = 765

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/727 (62%), Positives = 561/727 (77%), Gaps = 34/727 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 39  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 98

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRD+  ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  +  +RAGV
Sbjct: 99  LFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGV 158

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 159 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 218

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T
Sbjct: 219 SLMSCISVGTDPLPIITFLNEWGMEPLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDT 278

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDII 293
           +R+LRR+ D+  EV +VRDIR KEL+I+TD GR  RPLFIV+      ++ L +KK  + 
Sbjct: 279 IRKLRRKGDITPEVSIVRDIREKELKIFTDAGRVYRPLFIVDENTKTGRKELKVKKGHVR 338

Query: 294 ALQQRESPE-DGG----------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQAR 339
            L   E  + +GG          W  L+ +G +EYID EEEET +I+M   DL   VQ  
Sbjct: 339 KLMLTEYQDIEGGFDDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLEPAVQQA 398

Query: 340 LHPEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
              EE            +A+ +THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQ
Sbjct: 399 TETEEELDPARRIRAAHHANMFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQ 458

Query: 389 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
           AMG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQE
Sbjct: 459 AMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQE 518

Query: 449 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
           DS+IMNQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDD
Sbjct: 519 DSMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDD 578

Query: 509 GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
           GL  PG RVSG+D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TT
Sbjct: 579 GLIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITT 638

Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           N +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHA
Sbjct: 639 NQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHA 698

Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
           IPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGH
Sbjct: 699 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGH 758

Query: 687 TGRRLTA 693
           TG++L A
Sbjct: 759 TGKKLMA 765


>gi|94410924|gb|ABF18581.1| RNA polymerase II second largest subunit, partial [Porotheleum
           fimbriatum]
          Length = 689

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/691 (65%), Positives = 547/691 (79%), Gaps = 26/691 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV++ K+ NL  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E  EE   A    +TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLEALEE--NANTAASTKVF 178

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIV+
Sbjct: 179 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVD 238

Query: 282 KQRLLIKKRDIIALQQRESPE--DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q L++KK+ +  L Q E+ E  +  W  LV  G +E +D EEEET MISMT  DL  +R
Sbjct: 239 NQELVLKKKHVRWLTQGETDEGEEFKWEQLVKGGVVELLDAEEEETVMISMTPEDLETSR 298

Query: 340 L-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           L       H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299 LQQAGVDPHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359 YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419 CYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIAQLEEFEKPLRQNTLRMKHG 478

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKLDDDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479 TYDKLDDDGLISPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTN++G +FVKVRVRS+R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539 VDQVLITTNSEGQKFVKVRVRSIRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVP 598

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599 DLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAYLRQKGYQQRG 658

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
            E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 659 LEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 689


>gi|52699784|gb|AAU86954.1| DNA-dependent RNA polymerase II second largest subunit [Athelia
           bombacina]
          Length = 698

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/696 (65%), Positives = 548/696 (78%), Gaps = 25/696 (3%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDL GPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYS
Sbjct: 2   FGKKRLDLXGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYS 61

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 62  LATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 121

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           M+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+
Sbjct: 122 MVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTSP-LTKV 180

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIV
Sbjct: 181 FVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIV 240

Query: 281 EKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           E  +L++KK+ I  L Q   +  E+  W  LV  G IE +D EEEET MISMT  DL   
Sbjct: 241 EDHQLVLKKKHIRWLSQGLNDEKEEFKWEHLVKSGIIELLDAEEEETVMISMTPEDLEST 300

Query: 339 RL-------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           R+       H  +              A T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 301 RMKMQGLDPHANDGDFDPAARLKAGVNATTWTHCEIHPSMILGICASIIPFPDHNQSPRN 360

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMG QAMG ++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 361 TYQSAMGXQAMGXFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAI 420

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R +T+ M+H
Sbjct: 421 LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPSRDSTLRMKH 480

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDKL+DDG+  PGTRV+GED+IIGKT PI  D E  GQ +  +TRRD S  L+ +E G
Sbjct: 481 GTYDKLEDDGMIAPGTRVNGEDIIIGKTAPIPPDSEELGQRTNLHTRRDVSTPLKSTEKG 540

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVL+TTN++G +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 541 IVDQVLITTNSEGQKFVKVRVRSSRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIV 600

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ R
Sbjct: 601 PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAYLRQKGYQSR 660

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           G E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKI
Sbjct: 661 GLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKI 696


>gi|396941787|gb|AFN89611.1| RNA polymerase II, partial [Starmera amethionina]
          Length = 770

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/725 (62%), Positives = 557/725 (76%), Gaps = 36/725 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHITQKEGFESRKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+Q+ V+   D NL+ A+KA TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFKKLTKDIFRYMQRSVETDTDFNLKLAVKASTITSGLKYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PI  FLEEWG E  E+ +P   P  T++FVNG W GIHRDP  L  T
Sbjct: 230 SLMSGISVGTLSDPIYYFLEEWGLEPLEDYTPHQNPDVTRVFVNGVWAGIHRDPATLTST 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK---------------QR 284
           +++LRR  ++  EV ++RDIR +E +I+TD GR  RPLFIVE+                R
Sbjct: 290 IKQLRRNGEIPAEVSIIRDIREQEFKIFTDAGRVYRPLFIVEEGQNGEKELAYTKAIANR 349

Query: 285 LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--------- 335
           LL  + D +   +    E   W  L+  G +EYID EEEETTMI+M+I DL         
Sbjct: 350 LLETEYDSLGPDE----EPCTWETLLNGGVVEYIDAEEEETTMIAMSIEDLNPIDEYGNN 405

Query: 336 ----VQARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
                  R+ P  +  A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 406 EEPDPNKRIKPSFKKSAHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 465

Query: 391 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 450
           G+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 466 GVFLTNYSVRMDTMANILYYPQKPLATTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDS 525

Query: 451 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 510
           +IMNQSSIDRG FRSLFFRSY D+EK++G  V E+F +P+RSNT+  +HG+Y+KLDDDGL
Sbjct: 526 MIMNQSSIDRGLFRSLFFRSYMDQEKRVGMSVVEEFEKPNRSNTLRXKHGTYEKLDDDGL 585

Query: 511 APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 568
             PG RVSGED+IIGKTTPI  D E  GQ + Y T+RD S  LR +E+G+VDQVL+TTN 
Sbjct: 586 IAPGVRVSGEDIIIGKTTPIPPDVEELGQRTVYHTKRDASTPLRSTESGIVDQVLITTNQ 645

Query: 569 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
           +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+  EGI PD+I+NPHAIP
Sbjct: 646 EGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFNAEGIVPDLIINPHAIP 705

Query: 629 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 688
           SRMT+  LIEC++ KV++  G EGDA+PFTDVTVD ISK L + GYQ RGFE MY+GHTG
Sbjct: 706 SRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTVDAISKLLREHGYQSRGFEVMYHGHTG 765

Query: 689 RRLTA 693
           ++L A
Sbjct: 766 KKLMA 770


>gi|396941871|gb|AFN89653.1| RNA polymerase II, partial [Spathaspora passalidarum]
          Length = 779

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/732 (61%), Positives = 559/732 (76%), Gaps = 39/732 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 48  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 107

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 108 LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 167

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 168 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 227

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E+ E+  P+  P +T++FVNG WVG HRDP  LV T
Sbjct: 228 SLMTCISVGTPSEPILYFLEEWGMESLEDYVPSNSPDSTRVFVNGVWVGTHRDPVNLVDT 287

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +
Sbjct: 288 MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDSESETKGDLKLQKEHV 347

Query: 293 IALQQRESPEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------- 339
           + L   E  +  G     W  LV  G +EY+D EEEET MI+MT  DL  ++        
Sbjct: 348 LKLLNSEYDDYDGDEGYNWTSLVNDGIVEYVDAEEEETIMIAMTPEDLEASKNTLSQTQI 407

Query: 340 --LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
             +  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQS
Sbjct: 408 KAMQVEEQELDPAKRIKPVFSSATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS 467

Query: 384 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
           AMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYS
Sbjct: 468 AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYS 527

Query: 444 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
           GYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+
Sbjct: 528 GYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYE 587

Query: 504 KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQ 561
           KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQ
Sbjct: 588 KLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQ 647

Query: 562 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
           VLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I
Sbjct: 648 VLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLI 707

Query: 622 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
           +NPHAIPSRMT+  LIEC++ KV+A  G EGDA+PFTDVT + +S+ L + GYQ RGFE 
Sbjct: 708 INPHAIPSRMTVAHLIECLLSKVSALSGLEGDASPFTDVTAEAVSRLLREHGYQSRGFEV 767

Query: 682 MYNGHTGRRLTA 693
           MYNGHTG++L A
Sbjct: 768 MYNGHTGKKLMA 779


>gi|86559341|gb|ABD04078.1| RNA polymerase II second largest subunit, partial [Aureoboletus
           thibetanus]
          Length = 692

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/693 (65%), Positives = 547/693 (78%), Gaps = 26/693 (3%)

Query: 48  DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 107
           DL GPLL  LFRM F+KLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNW
Sbjct: 1   DLVGPLLANLFRMAFKKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNW 60

Query: 108 G-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAE 166
           G Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAE
Sbjct: 61  GDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAE 120

Query: 167 TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 226
           TPEGQACGLV+NLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W
Sbjct: 121 TPEGQACGLVRNLALMSGISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVW 179

Query: 227 VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 286
           +G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L 
Sbjct: 180 MGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLA 239

Query: 287 IKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---- 339
           ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL  +R    
Sbjct: 240 LQKKHIKWLNQGYRDDDGEEFKWEQLVKSGIIELLDAEEEETVMISMTPEDLENSRSQSA 299

Query: 340 -LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 384
            ++ +E+  D              T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 300 GINTQESEVDHDPAARLKAGITAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA 359

Query: 385 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 444
           MGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSG
Sbjct: 360 MGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSG 419

Query: 445 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 504
           YNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK
Sbjct: 420 YNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDK 479

Query: 505 LDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQV 562
           L+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQV
Sbjct: 480 LEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQV 539

Query: 563 LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 622
           L+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+++
Sbjct: 540 LITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVI 599

Query: 623 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 682
           NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E M
Sbjct: 600 NPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVM 659

Query: 683 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           Y+GHTG++L A I+LGPTYYQRLKHMVDDKIHS
Sbjct: 660 YHGHTGKKLQAQIYLGPTYYQRLKHMVDDKIHS 692


>gi|396941949|gb|AFN89691.1| RNA polymerase II, partial [Galactomyces geotrichum]
          Length = 775

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/726 (61%), Positives = 560/726 (77%), Gaps = 33/726 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY++HRLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  LLPNITQQEGFETRKAFFLGYMVHRLLLCALDRQDPDDRDHFGKKRLDLAGPLLAQLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  TRAGV
Sbjct: 110 LFKKLTRDIYRYMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GK+A+PRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTFSSTLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ ++PI+ FLEEWG E  E+  P   P AT++FVNG WVG+HRDP ++V T
Sbjct: 230 SLMSCISVGTPSHPIVCFLEEWGMEPLEDYVPHASPNATRVFVNGVWVGVHRDPTLIVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE RI TD GR  RPLF+V+       +  L ++K D+
Sbjct: 290 MRALRRRGDISPEVSIIRDIRSKEFRILTDAGRIYRPLFVVDNDPNSNTRGELKLRKEDV 349

Query: 293 IALQQRESPEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------- 339
             +   E   D G     W  LV  G +EYID EEEET MI+MT  DL  +R        
Sbjct: 350 EKILNSEEGLDNGEEPIGWSYLVNNGIVEYIDGEEEETVMIAMTPEDLETSRQMQFGVEV 409

Query: 340 ---------LHPEEA-YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
                    + P  A +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 410 AEEVDTLQRVKPLSALHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQA 469

Query: 390 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
           MG+Y+TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQED
Sbjct: 470 MGVYLTNYSVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQED 529

Query: 450 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
           S+IMNQ SIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++ G+YDKLD+DG
Sbjct: 530 SMIMNQGSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKKGTYDKLDEDG 589

Query: 510 LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTN 567
           L  PG RV+GED+IIGKT PIS D E  GQ ++ +T+RD S  LR +E GMVDQVLLTTN
Sbjct: 590 LVTPGIRVTGEDIIIGKTAPISPDAEELGQRTKNHTKRDVSTPLRSTEHGMVDQVLLTTN 649

Query: 568 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
            +GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++  G+ PD+++NPHAI
Sbjct: 650 QEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPFSALGVVPDLVINPHAI 709

Query: 628 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
           PSRMT+  LIEC++ KV+A  G EGDATPFTDVTV+ +SK L + G+  RGFE MY+GHT
Sbjct: 710 PSRMTVAHLIECLLSKVSALSGLEGDATPFTDVTVEAVSKLLRENGFHSRGFEVMYHGHT 769

Query: 688 GRRLTA 693
           GR+L A
Sbjct: 770 GRKLMA 775


>gi|83415487|gb|ABC17951.1| RNA polymerase II second largest subunit, partial [Rhizophlyctis
           rosea]
          Length = 719

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/722 (63%), Positives = 550/722 (76%), Gaps = 30/722 (4%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFRMLF+KLT+D   Y+ K V   KD  L  AI +KTI +GL+YSLAT
Sbjct: 2   KRLDLAGPLLSGLFRMLFKKLTKDTSRYMLKNVQEHKDFELASAINSKTIQNGLRYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q      RAGVSQVLNR TYASTLSHLRRLN+PIGR+GKLAKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKFMSARAGVSQVLNRYTYASTLSHLRRLNTPIGRDGKLAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM YITVGS   P+ EF++E GT          I Q+TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLSLMSYITVGSPGNPVKEFVKELGTVELASQGVGEISQSTKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK- 282
           G WVG+H DPE LV ++R  RR  +V+ E+ +VRD+R  EL + TD GR +RPLFIV+K 
Sbjct: 182 GAWVGVHDDPEYLVNSIREARRGAEVSLELSIVRDVREMELSLVTDAGRIARPLFIVDKD 241

Query: 283 -QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-- 339
            Q+L I K +I   Q+    ED  +  L+  G +EY+DTEEEETTMI+M+   L   R  
Sbjct: 242 SQKLRITKDNI---QEIMENEDVMFEALLTNGMVEYLDTEEEETTMIAMSPEVLADTRAM 298

Query: 340 -----------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                            L    +    +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 299 RKGTKRIITEKPDGTRRLRGNTSRTKEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 358

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMG+Y+T+YQ RMDT+A +L+YPQKPL TTR+M++L F++LPAG NAIVAI CY
Sbjct: 359 SAMGKQAMGVYLTSYQTRMDTMANILFYPQKPLATTRSMKYLKFKELPAGQNAIVAIGCY 418

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS- 501
           SGYNQEDS+IMNQSSIDRG FRS+++R Y D EKK+G    E   +PDR  T+ MR G+ 
Sbjct: 419 SGYNQEDSLIMNQSSIDRGLFRSMYYRVYLDTEKKVGLTNTETLEKPDRETTLRMRGGTA 478

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR---YTRRDHSISLRHSETGM 558
           YDKLDDDGL  PG RV G+D+IIGKT P+ QD ++    R   +T+RD S  L+ +E G+
Sbjct: 479 YDKLDDDGLVIPGKRVLGDDIIIGKTMPL-QDNSEELGQRRANHTKRDSSTPLKSTENGI 537

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQV+LTTN +G +FVKVRVRSVRIPQ+GDKF+SRHGQKGTVG+TY  EDMP+T +GI P
Sbjct: 538 VDQVILTTNGEGFKFVKVRVRSVRIPQMGDKFASRHGQKGTVGITYRTEDMPFTAQGIVP 597

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTIG L+EC++GKV A MG EGDATPFTDVTV ++S  L   G+Q RG
Sbjct: 598 DLIINPHAIPSRMTIGHLVECLIGKVGAIMGTEGDATPFTDVTVGSVSDTLKTLGFQPRG 657

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
           FE ++NGHTG++LTA ++ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGL
Sbjct: 658 FEVLHNGHTGKKLTAQLYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGL 717

Query: 739 RF 740
           RF
Sbjct: 718 RF 719


>gi|396941863|gb|AFN89649.1| RNA polymerase II, partial [Hyphopichia burtonii]
          Length = 783

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/735 (61%), Positives = 558/735 (75%), Gaps = 42/735 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PI  FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 229 SLMTCISVGTPSEPISYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAQLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +
Sbjct: 289 MRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPDSETKGDLKLQKEHV 348

Query: 293 ---IALQQRESPEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTINDL--------- 335
              I  +  E  ED       W  LV+ G +EY+D EEEET MI+MT  DL         
Sbjct: 349 HKLINSEYDEYDEDSADSAYTWSSLVSDGIVEYVDAEEEETIMIAMTPEDLEASKTSLSE 408

Query: 336 -VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
             Q  +  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 409 TQQKEVQLEEQEQDPAKRIKPTFSGSLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT 468

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIA
Sbjct: 469 YQSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIA 528

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG
Sbjct: 529 CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHG 588

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
           +Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 589 TYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGI 648

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ P
Sbjct: 649 VDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVP 708

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RG
Sbjct: 709 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRG 768

Query: 679 FETMYNGHTGRRLTA 693
           FE MYNGHTG++L A
Sbjct: 769 FEVMYNGHTGKKLMA 783


>gi|56694344|gb|AAW22912.1| RNA polymerase II second largest subunit [Torreya californica]
          Length = 514

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/517 (88%), Positives = 484/517 (93%), Gaps = 3/517 (0%)

Query: 189 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 248
           S+A PILEFL EW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1   SSANPILEFLXEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 249 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 308
           VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK DI  LQ   S EDG WH+
Sbjct: 61  VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKADINNLQA--SREDG-WHE 117

Query: 309 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 368
           LV +GFIEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLILGVCASII
Sbjct: 118 LVTQGFIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLILGVCASII 177

Query: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 428
           PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 178 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 237

Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 488
           LPAGI AIVAIACYSGY QEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGR
Sbjct: 238 LPAGIXAIVAIACYSGYXQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGR 297

Query: 489 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 548
           P+R NT GMRHGSYDKLDDDGLAPPGTRVSG DVIIGKTTPI+QDE+ GQ S+YT+RD S
Sbjct: 298 PNRENTXGMRHGSYDKLDDDGLAPPGTRVSGXDVIIGKTTPIAQDESGGQVSKYTKRDQS 357

Query: 549 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
            SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFS RHGQKGTVGMTYTQED
Sbjct: 358 TSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSXRHGQKGTVGMTYTQED 417

Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
           MPWTVEGITPDIIVNPHAIPSRMTIG LIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418 MPWTVEGITPDIIVNPHAIPSRMTIGXLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 669 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 478 LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 514


>gi|396941939|gb|AFN89686.1| RNA polymerase II, partial [Yarrowia lipolytica]
          Length = 780

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/731 (61%), Positives = 561/731 (76%), Gaps = 41/731 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KAY+ GY++HR+LL ALGR+  DDRDH+G KRLDLAGPL+ G+FRM
Sbjct: 50  LLPHITQEEGFETRKAYFLGYMVHRMLLVALGRKEPDDRDHFGKKRLDLAGPLMAGIFRM 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+ KCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFKKLTKDIYRYMLKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ ++PI+ FL+EWG E  E+  P     +T++FVNG WVG+HRD   L   
Sbjct: 230 SLMSCISVGTPSFPIINFLDEWGMEPLEDYVPHTHTTSTRVFVNGVWVGVHRDATQLTDM 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRR  D+ +EV ++RDIR KE+RI+TD GR  RPLF+VE       K  L+++K  I
Sbjct: 290 IKSLRRMGDIESEVSIIRDIREKEIRIFTDAGRVYRPLFVVENNPDAERKGELVLQKDHI 349

Query: 293 IALQQRESPE------------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
             LQQ+ + +            + GW+ LV  G IEYID EEEET MI+MT  DL     
Sbjct: 350 YQLQQQMAEQAETEGDEGKGDKNTGWNWLVDNGVIEYIDGEEEETVMIAMTPEDLEFSRQ 409

Query: 336 VQARLH-PEE-------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
           +QA +  PE+              ++ T+THCEIHPS+ILG+ ASIIPFPDHNQSPRNTY
Sbjct: 410 MQAGVEMPEDELDPARRVKPAYNPHSHTWTHCEIHPSMILGILASIIPFPDHNQSPRNTY 469

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI C
Sbjct: 470 QSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILC 529

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSV+MNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ M+HG+
Sbjct: 530 YSGYNQEDSVVMNQSSIDRGLFRSLFFRSYMDQERRVGMSVVEEFEKPTRADTLRMKHGT 589

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
           YDKLDDDGL  PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+V
Sbjct: 590 YDKLDDDGLVCPGVRVSGEDIIIGKTAPIPPDAEELGQRTKYHTKRDASTPLRSTENGIV 649

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLLTTN +GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ EG+ PD
Sbjct: 650 DQVLLTTNQEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGVVPD 709

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           II+NPHAIPSRMT+  LIEC++ KV+   G EGDATPFTDVTVD ISK L   GYQ RGF
Sbjct: 710 IIINPHAIPSRMTVAHLIECLLSKVSCLSGLEGDATPFTDVTVDAISKLLRSHGYQSRGF 769

Query: 680 ETMYNGHTGRR 690
           E MY+GHTG++
Sbjct: 770 EVMYHGHTGKK 780


>gi|396941955|gb|AFN89694.1| RNA polymerase II, partial [Dipodascopsis anomala]
          Length = 765

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/716 (62%), Positives = 556/716 (77%), Gaps = 31/716 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++H++L CAL RR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  LLPHITQSEGYETRKAFFLGYMVHKMLQCALERREVDDRDHFGKKRLDLAGPLLANLFRV 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRDV  Y+QKCV+  +D NL  A+K  TIT+GL+YSLATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTRDVYKYMQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PI+ FLEEWG E  E+  P   P A ++FVNG W+G+HRDP  L +T
Sbjct: 230 SLMSCISVGTPSQPIIFFLEEWGMEPLEDYVPHASPNAARVFVNGVWIGVHRDPAQLTQT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR +++ EV +VRDIR KE +I+TD GR  RPLF+V+       K  L++KK  +
Sbjct: 290 IRSLRRRANISPEVSIVRDIREKEFKIFTDAGRVYRPLFVVDDDENSIRKGELMLKKEHV 349

Query: 293 IAL-QQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLHPEE 344
             L    ES E+   GW+ LVA G +EYID EEEET MI+MT  DL     +QA +   E
Sbjct: 350 NKLIDDFESSEEDKYGWNSLVADGIVEYIDAEEEETVMIAMTPEDLETSRQIQAGIETTE 409

Query: 345 -------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
                        ++A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 410 NLDPSHRVKAVSTSHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 469

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +++TNY  RMDT+A +LYYPQKPL TTR+ME++ FR+LPAG NAIVAI CYSGYNQEDSV
Sbjct: 470 VFLTNYGVRMDTMANILYYPQKPLATTRSMEYMKFRELPAGQNAIVAILCYSGYNQEDSV 529

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQ+SIDRG FRSLFFRSY D+EK++G  V E+F +P + NT+ M+HG+YDKLDDDGL 
Sbjct: 530 IMNQNSIDRGLFRSLFFRSYMDQEKRVGMSVVEEFEKPIKGNTLRMKHGTYDKLDDDGLI 589

Query: 512 PPGTRVSGEDVIIGKTTPI-SQDEAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGED+IIGKT PI  + E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN +
Sbjct: 590 APGVRVSGEDIIIGKTAPIPPETEELGQRTQFHTKRDVSTPLRSTESGIVDQVLLTTNGE 649

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GLRFVK+R+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIPS
Sbjct: 650 GLRFVKIRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTSEGVVPDLIINPHAIPS 709

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 685
           RMT+  LIEC++ KV++  G EGDATPFTDVTVD +S+ L + GY  RGFE M NG
Sbjct: 710 RMTVAHLIECLLSKVSSLSGLEGDATPFTDVTVDAVSRLLREHGYHSRGFEVMXNG 765


>gi|92090854|gb|ABE73203.1| RNA polymerase II second largest subunit, partial [Hydropus cf.
           scabripes PBM 2513]
          Length = 687

 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/687 (65%), Positives = 545/687 (79%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+  L  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETQKEFKLAVAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENANSTTP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVEKQ
Sbjct: 181 GVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVEKQ 240

Query: 284 RLLIKKRDI--IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL- 340
           +L +KK+ I  ++  Q +  E+  W  LV  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 KLALKKQHIKWLSTGQTDDGEEFKWEHLVKGGIIELLDAEEEETVMISMTPEDLENSRLQ 300

Query: 341 ------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                 H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 QSGVSSHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +L+YPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILFYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSSIDRG FRS+++RSY D  KK+G    E+FG+P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLAKKVGQNAGEEFGKPSRENTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQ-ASRYTRRDHSISLRHSETGMVD 560
           DKL+DDGL  PGT V GED+IIGKT PI  + E  GQ  S++T+RD S  L+ +E G VD
Sbjct: 481 DKLEDDGLIAPGTGVVGEDIIIGKTAPIPPESEELGQRTSKHTKRDVSTPLKSTENGTVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN+DG  FVKVRVRS+RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNSDGQTFVKVRVRSIRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSEYLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|93278283|gb|ABF06597.1| RNA polymerase II second largest subunit, partial [Baeospora
           myosura]
          Length = 690

 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/691 (65%), Positives = 546/691 (79%), Gaps = 25/691 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+L ++K+ I  + Q   +  E+  W  LV  G IE +D EEEET MISMT  DL  +R
Sbjct: 240 NQQLALQKKHIKWIGQGTNDDGEEYKWEQLVKGGIIELLDAEEEETVMISMTPEDLENSR 299

Query: 340 L-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           L       H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 300 LQQSGVDIHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 359

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 360 YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 419

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 420 CYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPARENTLRMKHG 479

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 480 TYDKLEEDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 539

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTN++G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 540 VDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVP 599

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 600 DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSMYLRQKGYQSRG 659

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
            E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660 LEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690


>gi|300394706|gb|ADK11891.1| DNA-directed RNA polymerase II subunit two, partial [Gyrodon
           lividus]
          Length = 690

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/691 (65%), Positives = 546/691 (79%), Gaps = 26/691 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240 IVENQQLALQKKHIKWLNQGYRDDDGEDFKWEHLVKSGIIELLDAEEEETVMISMTPEDL 299

Query: 336 VQARL-----HPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL     +P E   D              T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300 ENSRLQSAGINPHENDGDFDPAARLKAGISAHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F RP R +T+ 
Sbjct: 420 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFERPTRDSTLR 479

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480 MKHGTYDKLEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN++G +FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540 ENGIVDQVLITTNSEGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GI PD+++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600 GIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           Q RG E MY+GHTG+++ A ++LGPTYYQRL
Sbjct: 660 QSRGLEVMYHGHTGKKIQAQVYLGPTYYQRL 690


>gi|410610283|gb|AFV74910.1| RNA polymerase II second largest subunit, partial [Champereia
           manillana]
          Length = 482

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/482 (95%), Positives = 477/482 (98%)

Query: 231 RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 290
           RDP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK+RLLIKK+
Sbjct: 1   RDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKRRLLIKKK 60

Query: 291 DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 350
           DI ALQQRES E+GGWHDLVAKG+IEYIDTEEEETTMISMTINDLV ARL+PEEAY++TY
Sbjct: 61  DIQALQQRESAEEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETY 120

Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
           THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY
Sbjct: 121 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 180

Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
           PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS
Sbjct: 181 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 240

Query: 471 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
           YRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI
Sbjct: 241 YRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPI 300

Query: 531 SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
           +QDE+QGQASRYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 301 AQDESQGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 360

Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
           SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK
Sbjct: 361 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 420

Query: 651 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD
Sbjct: 421 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 480

Query: 711 DK 712
           DK
Sbjct: 481 DK 482


>gi|396941861|gb|AFN89648.1| RNA polymerase II, partial [Metschnikowia bicuspidata]
          Length = 781

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/734 (61%), Positives = 557/734 (75%), Gaps = 41/734 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLP++      E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 48  MLPNITQEAGFESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRI 107

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGV
Sbjct: 108 LFKKLTRDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSARAGV 167

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 168 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 227

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+++ PIL FLEEWG E  E+  P+  P  T++FVNG WVG HR+P  LV T
Sbjct: 228 SLMTCISVGTSSEPILYFLEEWGMEPLEDYVPSNAPDCTRVFVNGVWVGTHREPAQLVDT 287

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +RRLRR+ D++ EV ++RDIR  E +I+TD GR  RPLFIV+       K  L+++K  +
Sbjct: 288 MRRLRRKGDISPEVSIIRDIREMEFKIFTDAGRVYRPLFIVDDDPESETKGELMLQKEHV 347

Query: 293 IALQQR---ESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR------ 339
             L      E  ED      W  LV  G +EY+D EEEET MI+MT  DL  ++      
Sbjct: 348 HKLLNSAYDEYDEDDSSAYTWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLSET 407

Query: 340 ----LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
               L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 408 QQHDLQLEEQELDPAKRIKPTYTSSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 467

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NA+VAIAC
Sbjct: 468 QSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAVVAIAC 527

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 528 YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGT 587

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
           Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+V
Sbjct: 588 YEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIV 647

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD
Sbjct: 648 DQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPD 707

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGF
Sbjct: 708 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGF 767

Query: 680 ETMYNGHTGRRLTA 693
           E MYNGHTG+++ A
Sbjct: 768 EVMYNGHTGKKMMA 781


>gi|396941857|gb|AFN89646.1| RNA polymerase II, partial [Clavispora lusitaniae]
          Length = 783

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/735 (61%), Positives = 557/735 (75%), Gaps = 42/735 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++      E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEAGFESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRL 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGV
Sbjct: 109 LFKKLTRDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+A+ PIL FLEEWG E  E+  P+  P  T++FVNG WVG HR+P  LV T
Sbjct: 229 SLMSCISVGTASEPILYFLEEWGMEPLEDYVPSNSPDCTRVFVNGVWVGTHREPAQLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +RRLRR+ D++ EV ++RDIR +E +I+TD GR  RPLFIV+       K  L+++K  I
Sbjct: 289 MRRLRRKGDISPEVSIIRDIREREFKIFTDAGRVYRPLFIVDDDPESETKGDLVLQKEHI 348

Query: 293 IALQQRESPEDG--------GWHDLVAKGFIEYIDTEEEETTMISMTINDL--------- 335
             L   E  E           W  LV  G +EY+D EEEET MI+MT +DL         
Sbjct: 349 HKLINSEYDEYDEESQANAYTWSSLVNDGVVEYVDAEEEETIMIAMTPDDLEASKSSLSE 408

Query: 336 -VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
             Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 409 TQQKSLQLEEQELDPAKRIKPTYTSSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT 468

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIA
Sbjct: 469 YQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIA 528

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG
Sbjct: 529 CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHG 588

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
           +Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 589 TYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGI 648

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI P
Sbjct: 649 VDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVP 708

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RG
Sbjct: 709 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRG 768

Query: 679 FETMYNGHTGRRLTA 693
           FE MYNGHTG++L A
Sbjct: 769 FEVMYNGHTGKKLMA 783


>gi|56694354|gb|AAW22917.1| RNA polymerase II second largest subunit [Thuja plicata]
          Length = 514

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/517 (86%), Positives = 480/517 (92%), Gaps = 3/517 (0%)

Query: 189 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 248
           S+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1   SSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 249 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 308
           VN EVGVVRDIRL+ LR+YTDYGRCSRPLF+VE QRL IKK  I  LQ   S  + GWH+
Sbjct: 61  VNPEVGVVRDIRLRXLRLYTDYGRCSRPLFVVENQRLKIKKAHIDHLQ---SSREDGWHE 117

Query: 309 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 368
           L+ +G IEY+DTEEEETTMISMTI DLV AR +PE+AY+ TYTHCEIHPSLILGVCASII
Sbjct: 118 LITQGCIEYVDTEEEETTMISMTIXDLVNARTNPEDAYSHTYTHCEIHPSLILGVCASII 177

Query: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 428
           PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQ PLVTTRAMEHLHF Q
Sbjct: 178 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQXPLVTTRAMEHLHFXQ 237

Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 488
           LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+ GTLVKE+FGR
Sbjct: 238 LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRAGTLVKEEFGR 297

Query: 489 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 548
           P+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++ GQ S+YT+RD S
Sbjct: 298 PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSAGQVSKYTKRDQS 357

Query: 549 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
            SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKF SRHGQKGTVGMTYTQE 
Sbjct: 358 TSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFXSRHGQKGTVGMTYTQEX 417

Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
           MPW VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418 MPWXVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 669 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 478 LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 514


>gi|6606115|gb|AAF19070.1|AF107798_1 DNA-dependent RNA polymerase II RPB140 [Capronia pilosella]
          Length = 937

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/783 (59%), Positives = 568/783 (72%), Gaps = 46/783 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+G G     +KA++ GY+++RLL CALGR   DDRDH G KRLDLAGPL+  LFR+
Sbjct: 158 FLPHIGQGPDATARKAFFLGYMVNRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRL 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            F K T+D   Y+QK V++ + +N+    K   ITSGLKYSLATGNWG Q      +AGV
Sbjct: 218 QFDKATKDFYRYMQKRVESNQPINIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVL+R T+ASTLSHLRR N+PIGREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL
Sbjct: 278 SQVLSRYTFASTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI-HRDPEMLVK 238
           +LM  +T      P+L ++     E  E+  P + PQATK+FV+G W  +  RDP+ LV 
Sbjct: 338 SLMSMVTNTYETGPLLNYILTKHVEALEDWEPRLNPQATKVFVDGVWFAVVLRDPKRLVD 397

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRD 291
            LR+LRR+   +++V +V DIR KE +I  D GR  RPLFIVE  R       L++ K  
Sbjct: 398 DLRKLRRKGVFDSQVSLVWDIRDKEFKISGDSGRIVRPLFIVETDRASENLGNLVLNKDH 457

Query: 292 IIALQQRESPEDGG-----------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
           I  L Q    ++GG           W+DL+  G +EY+D EEEET MI MT   L  ++ 
Sbjct: 458 ISKLDQTAYLKEGGFQWTDEIRPYGWNDLLESGVVEYLDAEEEETAMIIMTPEALSDSKA 517

Query: 340 --------------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
                               L+P   ++ T+THCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 518 KWLGMEIENEDDPLRRNDPLLNP---HSHTFTHCEIHPSMILGVCASIIPFPDHNQSPRN 574

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL  T AM++L FR+LPAG NAIVAI
Sbjct: 575 TYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLARTMAMDYLKFRELPAGQNAIVAI 634

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           ACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y+D EK +G  V E F +P R++T+ ++H
Sbjct: 635 ACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDSEKSVGHSVMEQFEKPTRTDTLRLKH 694

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDK+D+DG+  PG RVSGED+I+GKT P++ D E  GQ  + + +RD S  LR +E+G
Sbjct: 695 GTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDAEELGQRQKQHIKRDVSTPLRSTESG 754

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQV+LTT  DG RF KVRVR+ + PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI 
Sbjct: 755 IVDQVMLTTTNDGHRFAKVRVRTTKTPQIGDKFASRHGQKGTIGITYRTEDMPFTREGIV 814

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMTI  LIEC + KVA   G EGDATPFT VTV  +S  L + GYQ R
Sbjct: 815 PDLIINPHAIPSRMTIAHLIECQLSKVATLRGDEGDATPFTKVTVTQVSDLLRRMGYQSR 874

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
           GFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDGG
Sbjct: 875 GFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGG 934

Query: 738 LRF 740
           LRF
Sbjct: 935 LRF 937


>gi|396941865|gb|AFN89650.1| RNA polymerase II, partial [Hyphopichia heimii]
          Length = 783

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/735 (61%), Positives = 556/735 (75%), Gaps = 42/735 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PI  FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV+T
Sbjct: 229 SLMTCISVGTPSEPISYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAQLVET 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L + K  I
Sbjct: 289 MRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPDSETKGELKLHKEHI 348

Query: 293 IALQQRESPE------DGG--WHDLVAKGFIEYIDTEEEETTMISMTINDL--------- 335
             L   E  E      D    W  LV  G +EY+D EEEET MI+MT  DL         
Sbjct: 349 HKLINSEYDEYDEDTLDSAYTWSSLVNDGIVEYVDAEEEETIMIAMTPEDLDASKSALSE 408

Query: 336 -VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
             Q  +  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 409 TQQKDIQLEEQEIDPAKRIKPTYSSATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT 468

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIA
Sbjct: 469 YQSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIA 528

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG
Sbjct: 529 CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLKHG 588

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
           +Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 589 TYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGI 648

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI P
Sbjct: 649 VDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVP 708

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RG
Sbjct: 709 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRG 768

Query: 679 FETMYNGHTGRRLTA 693
           FE MYNGHTG++L A
Sbjct: 769 FEVMYNGHTGKKLMA 783


>gi|300394702|gb|ADK11889.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora sp.
           Braz-6]
          Length = 693

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/694 (65%), Positives = 547/694 (78%), Gaps = 27/694 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST-VCT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 334
           IVE Q+LL++K+ I  L Q     E  E+  W  LV  G IE +D EEEET MI+MT  D
Sbjct: 240 IVENQQLLLQKKHIKWLNQGYRDDEPAEEFKWDQLVKGGVIELLDAEEEETVMIAMTPED 299

Query: 335 LVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 300 LENSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRGLPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420 IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ 
Sbjct: 480 RMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540 TENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGI PD+++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + G
Sbjct: 600 EGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKG 659

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           YQ RG E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 660 YQSRGLEVMYHGHTGRKLRAQVYLGPTYYQRLKH 693


>gi|396941879|gb|AFN89657.1| RNA polymerase II, partial [Priceomyces castillae]
          Length = 777

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/729 (61%), Positives = 555/729 (76%), Gaps = 36/729 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KAY+ GY+++RLLL AL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFETRKAYFLGYMVNRLLLAALERKEPDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGV
Sbjct: 109 LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGSVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 229 SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLF+V+       K  L +KK  +
Sbjct: 289 IRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDPESETKGELKLKKEYV 348

Query: 293 IAL------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP---- 342
             L      +  E  E   W  L++ G +EY+D EEEET MI+MT  DL   +  P    
Sbjct: 349 HKLLNSEYDEYDEDAESYTWSSLLSDGIVEYVDAEEEETIMIAMTPEDLEANKEAPNRET 408

Query: 343 ----EEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
               EEA            +  T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMG
Sbjct: 409 EIAKEEADPAKRIKPTISGHGHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMG 468

Query: 387 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
           KQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYN
Sbjct: 469 KQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYN 528

Query: 447 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
           QEDS+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P R++T+ ++HG+Y+KLD
Sbjct: 529 QEDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRTDTLRLKHGTYEKLD 588

Query: 507 DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLL 564
           DDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLL
Sbjct: 589 DDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLL 648

Query: 565 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 624
           TTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD+I+NP
Sbjct: 649 TTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVPDLIINP 708

Query: 625 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 684
           HAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GY  RGFE MYN
Sbjct: 709 HAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTTEAISKLLRQHGYHSRGFEVMYN 768

Query: 685 GHTGRRLTA 693
           GHTG++L A
Sbjct: 769 GHTGKKLMA 777


>gi|300394734|gb|ADK11905.1| DNA-directed RNA polymerase II subunit two, partial [Porphyrellus
           porphyrosporus]
          Length = 689

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/690 (65%), Positives = 543/690 (78%), Gaps = 26/690 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHLGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240 IVENQQLALQKKHIKWLNQGYRDDDGEKFKWEQLVKTGIIELLDAEEEETVMISMTPEDL 299

Query: 336 VQARL-----HPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL     +P E   D              T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300 ENSRLQSAGINPHENDGDFDPAARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLR 479

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480 MKHGTYDKLEDDGLIAPGTNVKGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540 ENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           G+ PD+I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600 GVVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
             RG E MY+GHTG++L A I+LGPTYYQR
Sbjct: 660 HSRGLEVMYHGHTGKKLQAQIYLGPTYYQR 689


>gi|396941889|gb|AFN89662.1| RNA polymerase II, partial [Scheffersomyces spartinae]
          Length = 758

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/721 (61%), Positives = 557/721 (77%), Gaps = 28/721 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 38  LLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRI 97

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+Q+CV+N K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 98  LFKKLTKDIYNYMQRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGV 157

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 158 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 217

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV+T
Sbjct: 218 SLMTCISVGTPSEPILYFLEEWGMEPLEDYVPSSSPDSTRVFVNGVWVGTHREPAHLVET 277

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLF+V+       K  L ++K  I
Sbjct: 278 MRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDPESETKGNLKLQKEHI 337

Query: 293 IALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARLHPEE--- 344
            +L   E  E+   GW +LV  G +EY+D EEEET MI+M   DL        + EE   
Sbjct: 338 HSLLNSEYDENEKYGWTELVNAGVVEYVDAEEEETIMIAMFPEDLESTANVESNEEEDMD 397

Query: 345 ----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 394
                     +   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++
Sbjct: 398 AAKRIRTSIKSSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFL 457

Query: 395 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 454
           TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NA+VAIACYSGYNQEDS+IMN
Sbjct: 458 TNYSVRMDTMANILYYPQKPLGTTRSMEFLKFRELPAGQNAVVAIACYSGYNQEDSMIMN 517

Query: 455 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 514
           QSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG
Sbjct: 518 QSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPG 577

Query: 515 TRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLR 572
            RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +
Sbjct: 578 VRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAK 637

Query: 573 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
           FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRMT
Sbjct: 638 FVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSRQGIVPDLIINPHAIPSRMT 697

Query: 633 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 692
           +  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHTG++L 
Sbjct: 698 VAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYNGHTGKKLM 757

Query: 693 A 693
           A
Sbjct: 758 A 758


>gi|396941837|gb|AFN89636.1| RNA polymerase II, partial [Eremothecium cymbalariae]
          Length = 776

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/727 (62%), Positives = 560/727 (77%), Gaps = 34/727 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 50  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRD+  ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T
Sbjct: 230 SLMSCISVGTDPVPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-------QRLLIKKRDI 292
           +R+LRR+ D+  EV +VRDIR KEL+I+TD GR  RPLF+V +       + L ++K  I
Sbjct: 290 IRKLRRKGDITAEVSIVRDIREKELKIFTDAGRVYRPLFVVAESLHNDGHKELKVRKGHI 349

Query: 293 IALQQRESPE-DGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQAR 339
             L   E  + +GG         W  L+ +G +EYID EEEET +I+M   DL   V   
Sbjct: 350 RKLMLTEYQDIEGGFEEEDINYTWTSLLNEGIVEYIDAEEEETILIAMQQEDLDPNVPQT 409

Query: 340 LHPEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
             P +            +++T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 410 ADPSDELDPARRIKAIHHSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQ 469

Query: 389 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
           AMG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQE
Sbjct: 470 AMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQE 529

Query: 449 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
           DS+IMNQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDD
Sbjct: 530 DSMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDD 589

Query: 509 GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
           GL  PG RVSG+D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TT
Sbjct: 590 GLIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITT 649

Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           N +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHA
Sbjct: 650 NQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTSEGVVPDLIINPHA 709

Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
           IPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGH
Sbjct: 710 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGH 769

Query: 687 TGRRLTA 693
           TG++L A
Sbjct: 770 TGKKLMA 776


>gi|6606095|gb|AAF19060.1|AF107788_1 DNA-dependent RNA polymerase II RPB140 [Pichia kudriavzevii]
          Length = 905

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/753 (60%), Positives = 564/753 (74%), Gaps = 53/753 (7%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAY+FGYII+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 153 FLPHISQDGGHETNKAYFFGYIINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRI 212

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+C+++G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGV
Sbjct: 213 LFRKLSRDIYRYMQRCIEHGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGV 272

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 273 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 332

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGSA+ PI   LEEWG E   +  P     +T++F+NG WVG HRDP MLV T
Sbjct: 333 SLMSCISVGSASEPITYLLEEWGLEPISDYDPQEHKLSTRVFLNGNWVGTHRDPGMLVDT 392

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
           +R+LRR   +++EV ++RDIR +E +I+TD GR  RPLFIV+       K  L + K   
Sbjct: 393 MRQLRRSGTISSEVSLIRDIREREFKIFTDAGRVYRPLFIVDDDPDSENKGGLKLTKEHC 452

Query: 290 RDIIALQQRESPEDG----------------GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
           R I+  +  E P+D                 GW  L+++G +EY+D EEEET +I+M+  
Sbjct: 453 RKILDREVEEIPQDDEFDENGEPLEPLQRIYGWESLLSEGIVEYLDAEEEETVLIAMSSE 512

Query: 334 DLVQARLHPEE------------------------AYADTYTHCEIHPSLILGVCASIIP 369
           DL     + E+                          + ++THCEIHPS+ILGV ASIIP
Sbjct: 513 DLSFNNQNGEDDEHMNQDHDENGNLIQSDKRIKSHINSHSFTHCEIHPSMILGVAASIIP 572

Query: 370 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 429
           FPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL  T++ME L FR+L
Sbjct: 573 FPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLAKTQSMEFLKFREL 632

Query: 430 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 489
           PAG NAIVAI CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P
Sbjct: 633 PAGQNAIVAICCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRNGISVVEEFEKP 692

Query: 490 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDH 547
            RSNT+G + G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD 
Sbjct: 693 MRSNTLGFKAGTYEKLDDDGLISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDA 752

Query: 548 SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 607
           S  LR +E+G+VDQVLLTTN++GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  E
Sbjct: 753 STPLRATESGIVDQVLLTTNSEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRNE 812

Query: 608 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 667
           DMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK
Sbjct: 813 DMPFTSEGIVPDLIINPHAIPSRMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSK 872

Query: 668 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
            L + GYQ RGFE MYNGHTG++L A +F GPT
Sbjct: 873 LLRENGYQSRGFEVMYNGHTGKKLMAQVFFGPT 905


>gi|396941933|gb|AFN89683.1| RNA polymerase II, partial [Wickerhamiella domercqiae]
          Length = 781

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/735 (62%), Positives = 564/735 (76%), Gaps = 45/735 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY++HR+LL AL RR +DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 50  LLPHITQQEGYETRKAFFLGYMVHRMLLVALDRRDQDDRDHFGKKRLDLAGPLLANLFRM 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  Y+QKCV+  KD N+  A+K+ TIT+GLKYSLATGNWG Q  A  ++AGV
Sbjct: 110 LFKKLTRDIFRYMQKCVEGNKDFNVTLAVKSNTITNGLKYSLATGNWGDQKRAMSSKAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIG++GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGKDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  ++VGS + PI+ FLEEWG E  E+  P     AT++FVNG W+G+HR+P +LV+T
Sbjct: 230 SLMTGVSVGSPSDPIIYFLEEWGMEPLEDFVPHANNNATRVFVNGVWIGVHREPTLLVET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-----------QRLLIK 288
           +R LRRR D++ E+ +VRDIR KE +I TD GR  RPLFIV+             RLL  
Sbjct: 290 MRNLRRRGDISPEITIVRDIREKEFKILTDAGRVYRPLFIVQNGTDLKLTKDHVDRLLYT 349

Query: 289 KRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH------- 341
             + +     +SP+   W  LV +G +EYID EEEET MI+MT +DL QA+L+       
Sbjct: 350 DENALP---PDSPDYFSWSQLVQQGIVEYIDGEEEETVMIAMTPDDLEQAKLNTARNGGE 406

Query: 342 -PEEA--------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
            PE                        +T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 407 PPETVDNSIDMPIDTGRRLKPKLNNMGNTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 466

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 467 YQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 526

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG
Sbjct: 527 CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHG 586

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
           +YDKLD+DGL  PG RVSGED+IIGKT PI  D E  GQ +R+ T+RD S  LR +E+G+
Sbjct: 587 TYDKLDEDGLVIPGQRVSGEDIIIGKTAPIPPDTEELGQRTRFHTKRDASTPLRSTESGI 646

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTN +GLRFVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T EGI P
Sbjct: 647 VDQVLLTTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTVGITYRHEDMPFTAEGIVP 706

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMT+  LIEC++ KV A  G EGDATPFTDVTVD ISK L + GYQ RG
Sbjct: 707 DLIINPHAIPSRMTVAHLIECLLSKVGALSGLEGDATPFTDVTVDAISKLLREHGYQSRG 766

Query: 679 FETMYNGHTGRRLTA 693
           FE MYNGHTGR++ A
Sbjct: 767 FEVMYNGHTGRKIVA 781


>gi|119644256|gb|ABL85615.1| RNA polymerase II second largest subunit [Degelia plumbea]
          Length = 718

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/721 (62%), Positives = 557/721 (77%), Gaps = 47/721 (6%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV++ ++ NL   IK+ T+T+
Sbjct: 1   DDRDHFGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGIKSTTLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YITVGS + PI++F+ +   E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIDFMMKRNMEILEEYEPLRSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG WVG+HRDP  LV  ++ LRRR  ++ EV +VRDIR +E +I+TD GR  R
Sbjct: 181 NATKVFVNGVWVGVHRDPAHLVSNVQSLRRRHWISHEVSLVRDIRDREFKIFTDAGRVCR 240

Query: 276 PLFIVEKQ-------RLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEY 317
           PLF++E          L++ K  I+ L++ +       PE+      GW  LV +G +EY
Sbjct: 241 PLFVIENDAKNPNCGNLVLTKGHILRLEEDKELGADMDPEEREERFMGWEGLVNQGVVEY 300

Query: 318 IDTEEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCE 354
           +D EEEET MI MT  DL                       V+A++ P    A T+THCE
Sbjct: 301 VDAEEEETVMIVMTPEDLDISRQVQAGHDPEPPPDDDPNRRVKAKMSPT---AHTWTHCE 357

Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 414
           IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKP
Sbjct: 358 IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKP 417

Query: 415 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 474
           L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+
Sbjct: 418 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 477

Query: 475 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 533
           EK++G  + E F +P +S+T+ ++HG+YDKLDDDG+  PG RV G+D++IGKT PI+ D 
Sbjct: 478 EKRVGMTIVEQFEKPMKSDTLKLKHGTYDKLDDDGIVSPGVRVFGDDIVIGKTAPIAPDA 537

Query: 534 EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 592
           E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ ++PQIGDKF+S
Sbjct: 538 EELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFAS 597

Query: 593 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 652
           RHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EG
Sbjct: 598 RHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEG 657

Query: 653 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           DATPFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 658 DATPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 717

Query: 713 I 713
           I
Sbjct: 718 I 718


>gi|110669594|gb|ABG81892.1| RNA polymerase II second largest subunit [Mycoblastus sanguinarius]
          Length = 709

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/709 (63%), Positives = 551/709 (77%), Gaps = 41/709 (5%)

Query: 46  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 105
           RLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+N K+ N+  A+K+ T+T+GLKYSLATG
Sbjct: 1   RLDLAGPLLAGLFRMLFHKLTKDVFKYLQKCVENNKEFNMTLAVKSTTLTNGLKYSLATG 60

Query: 106 NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 164
           NWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61  NWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVNG
Sbjct: 121 AETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLSSPNATKIFVNG 180

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 284
            WVG+HRDP  LV+T++ LRR+  ++ EV +VRDIR +E +I+TD GR  RPLF+++   
Sbjct: 181 VWVGVHRDPAHLVRTVQNLRRKGLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDS 240

Query: 285 -------LLIKKRDIIALQQ----------RESPEDG-GWHDLVAKGFIEYIDTEEEETT 326
                  L++ K D+I L+           +E  E G GW  LV KG +EY+D EEEET 
Sbjct: 241 KSDNRGGLVLTKEDVIKLEDDREIAAEMDAQEKEEQGVGWQGLVKKGVVEYVDAEEEETI 300

Query: 327 MISMTINDLVQARL--------------------HPEEAYADTYTHCEIHPSLILGVCAS 366
           MI MT  DL  +R                      P +A A T+THCEIHPS+ILG+CAS
Sbjct: 301 MIVMTPEDLEISRQIQAGYTLPEANPDDLNKRVKAPLKATAHTWTHCEIHPSMILGICAS 360

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 361 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F
Sbjct: 421 RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 480

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 544
            +P RS+T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +
Sbjct: 481 EKPMRSDTLKLKHGTYEKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVK 540

Query: 545 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
           RD S  LR +E G+VDQVLL+TN+DGLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 541 RDASTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 600

Query: 605 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+
Sbjct: 601 RQEDMPFTGEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEVTVDS 660

Query: 665 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           +S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 VSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 709


>gi|396941859|gb|AFN89647.1| RNA polymerase II, partial [Metschnikowia agaves]
          Length = 771

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/734 (61%), Positives = 555/734 (75%), Gaps = 41/734 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++      E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 38  LLPNITQEAGFESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRI 97

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGV
Sbjct: 98  LFKKLTRDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSARAGV 157

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 158 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 217

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+++ PIL FLEEWG E  E+  P+  P  T++FVNG WVG HR+P  LV T
Sbjct: 218 SLMSCISVGTSSEPILYFLEEWGMEPLEDYVPSNAPDCTRVFVNGVWVGTHREPAQLVDT 277

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +RRLRR+ D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L+++K  +
Sbjct: 278 MRRLRRKGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELMLQKEHV 337

Query: 293 IALQQR---ESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQA------- 338
             L      E  +D      W  LV  G +EY+D EEEET MI+MT  DL  +       
Sbjct: 338 HKLLDSAYDEYDDDNSNAYTWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLSET 397

Query: 339 ----------------RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                           R+ P   A   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 398 QQQDIQMEEQELDPAKRIKPTYSASTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 457

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR MEHL FR+LPAG NAIVAIAC
Sbjct: 458 QSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRGMEHLKFRELPAGQNAIVAIAC 517

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 518 YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGT 577

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
           Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y  +RD S  LR +E+G+V
Sbjct: 578 YEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHVKRDASTPLRSTESGIV 637

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD
Sbjct: 638 DQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPD 697

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMT+  LIEC++ KV++  G EGDATPFTDVT + +SK L + GYQ RGF
Sbjct: 698 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDATPFTDVTAEAVSKLLREHGYQSRGF 757

Query: 680 ETMYNGHTGRRLTA 693
           E MYNGHTG++L A
Sbjct: 758 EVMYNGHTGKKLMA 771


>gi|55583684|gb|AAV53361.1| RNA polymerase II second largest subunit [Flammulina velutipes]
          Length = 691

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/693 (65%), Positives = 549/693 (79%), Gaps = 27/693 (3%)

Query: 58  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 116
           FRMLFRKLTRDV  Y+QKCV+  K+ N+   +K +TIT+GLKYSLATGNWG Q  +  ++
Sbjct: 1   FRMLFRKLTRDVYRYLQKCVETRKEFNVNVGVKHQTITNGLKYSLATGNWGDQKKSMSSK 60

Query: 117 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 176
           AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLV
Sbjct: 61  AGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLV 120

Query: 177 KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 236
           KNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L
Sbjct: 121 KNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANL 179

Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
           VKT+++LRR+ D++ EV +VRDIR KELR+YTD GR  RPLFIVE Q+L+++K+ +  + 
Sbjct: 180 VKTIKKLRRKDDISPEVSLVRDIREKELRLYTDPGRVCRPLFIVENQQLVLQKKHVKWIV 239

Query: 297 QRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------LHPEEAY 346
            R S +DG    W  L+  G IE +D EEEET MISM+ +DL  +R        H  E  
Sbjct: 240 -RGSDDDGQEYKWEQLIKTGIIELLDAEEEETVMISMSPDDLETSRNQQSGLDTHTNEGE 298

Query: 347 AD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 394
            D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++
Sbjct: 299 FDPAARLKAGVNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFL 358

Query: 395 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 454
           TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMN
Sbjct: 359 TNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMN 418

Query: 455 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 514
           QSS+DRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PG
Sbjct: 419 QSSVDRGLFRSIYYRSYMDVEKKSGVQALEEFEKPQRDTTLRMKHGTYDKLEDDGLIAPG 478

Query: 515 TRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLR 572
           T V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNA+G +
Sbjct: 479 TGVRGEDIIIGKTAPIPPDSEELGQRTRLHTRRDVSTPLKSTESGIIDQVLITTNAEGQK 538

Query: 573 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
           FVKVRVR+ RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMT
Sbjct: 539 FVKVRVRATRIPQTGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMT 598

Query: 633 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 692
           IG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L 
Sbjct: 599 IGHLVECLLSKVATLIGHEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQ 658

Query: 693 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 725
           A ++LGPTYYQRLKHMVDDKIHSR RGPVQILT
Sbjct: 659 AQVYLGPTYYQRLKHMVDDKIHSRARGPVQILT 691


>gi|396941903|gb|AFN89669.1| RNA polymerase II, partial [Cephaloascus fragrans]
          Length = 789

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/741 (61%), Positives = 558/741 (75%), Gaps = 48/741 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPHITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+  KD NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLTKDIYNYMQRCVETDKDFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + PI+ FLEEWG E  E+  P + P +T++FVNG WVG HR+P  LV+T
Sbjct: 229 SLMTCISVGSNSEPIIYFLEEWGMEPLEDYVPHLSPNSTRVFVNGVWVGTHREPATLVET 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR  D+  EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I
Sbjct: 289 MRNLRRSGDIEPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESEHKGELKLRKEHI 348

Query: 293 IALQQR-----------------ESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
             L  +                  S ED   GW  L+ +G IEY+D EEEET MI+MT  
Sbjct: 349 RKLVNQEEDDADFDDELDEDGNPRSREDRSYGWDKLLREGLIEYVDAEEEETIMIAMTPE 408

Query: 334 DLVQAR-LH----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHN 374
           DL   R +H    P +   D              T+THCEIHPS+ILGV ASIIPFPDHN
Sbjct: 409 DLEANRDMHTGTDPNDEELDPAKRIRTAFNPNTHTFTHCEIHPSMILGVAASIIPFPDHN 468

Query: 375 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 434
           QSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+MEHL FR+LPAG N
Sbjct: 469 QSPRNTYQSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRSMEHLKFRELPAGQN 528

Query: 435 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 494
           AIVAI+CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G  V E+F +P RSNT
Sbjct: 529 AIVAISCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKVLEEFEKPHRSNT 588

Query: 495 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLR 552
           + M+HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR
Sbjct: 589 LRMKHGTYEKLDDDGLIAPGFRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLR 648

Query: 553 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
            +E G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T
Sbjct: 649 STENGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRSEDMPFT 708

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
            EG+ PD+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDA+PFTDVTV+ +S  L   
Sbjct: 709 AEGLVPDLIINPHAIPSRMTVAHLIECLLSKVASLSGLEGDASPFTDVTVEAVSNLLRDH 768

Query: 673 GYQMRGFETMYNGHTGRRLTA 693
           GY  RGFE MYNGHTG+++ A
Sbjct: 769 GYHSRGFEVMYNGHTGKKMMA 789


>gi|396941851|gb|AFN89643.1| RNA polymerase II, partial [Dekkera bruxellensis]
          Length = 785

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/736 (61%), Positives = 559/736 (75%), Gaps = 43/736 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAY+ GYI++RLLLCAL RR  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHISQDSGYETNKAYFLGYIVNRLLLCALERREPDDRDHFGKKRLDLAGPLLANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL++D+  Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLSKDIYRYMQRCIERGEDXNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+++ PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV T
Sbjct: 230 SLMAGISVGTSSEPISYLLEEWGLEPLSDYDPQEHKNATRVFLNGNWVGTHRDPGMLVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R+LRR   ++ EV +VRDIR +E +I+TD GR  RPLFIV+       K  L I K D+
Sbjct: 290 MRQLRRSGTISPEVSLVRDIREREFKIFTDAGRVYRPLFIVDNDPDSPRKGNLKITKDDV 349

Query: 293 IALQQRE----SPE-----DG----------GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
             ++ RE    +PE     DG          GW  LV  G +EY+D EEEETT+I+M+  
Sbjct: 350 RKIRDREVEEIAPEEDVDEDGNPAEPIRRVYGWDSLVTNGMVEYLDAEEEETTLIAMSPE 409

Query: 334 DLV---------QARLHPEEAY-----ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           DL+         +  L P +       + ++THCEIHP++ILGV ASIIPFPDHNQSPRN
Sbjct: 410 DLLPMSKQDQRREVELDPAKRIKTHINSHSFTHCEIHPAMILGVAASIIPFPDHNQSPRN 469

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+Y+TNY  RMDT++ +LYYPQKPL  T++ME L FR+LPAG N IVAI
Sbjct: 470 TYQSAMGKQAMGVYLTNYNVRMDTMSNILYYPQKPLAKTQSMEFLKFRELPAGQNCIVAI 529

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           ACYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+E++ G  + E+F +P+RSNT+G + 
Sbjct: 530 ACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDQERRNGISIVEEFEKPNRSNTLGFKV 589

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
           G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 590 GTYEKLDDDGLVAPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYXTKRDASTPLRSAESG 649

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQV+LTTNA+GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+GMTY  EDMP+T EGI 
Sbjct: 650 IVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGMTYRHEDMPFTAEGIV 709

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPH IPSRMT+  L+EC++ KVAA  G EGDATPFTD+TVD +SK L + GYQ R
Sbjct: 710 PDIIINPHCIPSRMTVAHLVECLLSKVAALRGYEGDATPFTDLTVDAVSKLLRENGYQSR 769

Query: 678 GFETMYNGHTGRRLTA 693
           GFE MYNGHTG++L A
Sbjct: 770 GFEVMYNGHTGKKLMA 785


>gi|396941853|gb|AFN89644.1| RNA polymerase II, partial [Kodamaea ohmeri]
          Length = 766

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/726 (62%), Positives = 558/726 (76%), Gaps = 33/726 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 41  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 100

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGV
Sbjct: 101 LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGV 160

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 161 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 220

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PIL FLEEWG E  E+  P   P +T++FVNG W+G HR+P  LV+T
Sbjct: 221 SLMSCISVGTPLEPILYFLEEWGMEPLEDYVPLNSPDSTRVFVNGVWLGTHREPAQLVET 280

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  + ++K  +
Sbjct: 281 MRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPDSPTKGDIKLEKEHV 340

Query: 293 IALQQRESPE--DG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP------- 342
             L   E  +  DG  W  LV  G IEY+D EEEET MI+MT  DL  A+L         
Sbjct: 341 NKLLSSEYDDEYDGYTWSLLVNDGVIEYVDAEEEETIMIAMTPEDLEAAKLSKTDVKIEE 400

Query: 343 -----------EEAYAD--TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
                      ++AY+   T+THCEIHPS+ILGV A IIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 401 IEEELDAAKRIKQAYSSSHTFTHCEIHPSMILGVAALIIPFPDHNQSPRNTYQSAMGKQA 460

Query: 390 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
           MG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NA+VAIACYSGYNQED
Sbjct: 461 MGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAVVAIACYSGYNQED 520

Query: 450 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
           S+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDG
Sbjct: 521 SMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALESFEKPTRSDTLRLKHGTYEKLDDDG 580

Query: 510 LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTN 567
           L  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN
Sbjct: 581 LIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRATESGIVDQVLLTTN 640

Query: 568 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
            DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAI
Sbjct: 641 GDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHAI 700

Query: 628 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
           PSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHT
Sbjct: 701 PSRMTVAHLIECLLLKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYNGHT 760

Query: 688 GRRLTA 693
           G++L A
Sbjct: 761 GKKLMA 766


>gi|396941877|gb|AFN89656.1| RNA polymerase II, partial [Priceomyces haplophilus]
          Length = 774

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/728 (61%), Positives = 551/728 (75%), Gaps = 35/728 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KAY+ GY+++RLLL AL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 47  LLPNITQEEGFETRKAYFLGYMVNRLLLAALERKEPDDRDHFGKKRLDLAGPLLANLFRI 106

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGV
Sbjct: 107 LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGV 166

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 167 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 226

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 227 SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 286

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLF+V+       K  L +KK  +
Sbjct: 287 IRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDPESETKGELKLKKEHV 346

Query: 293 IALQQRE------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE--- 343
             L   E        E   W  L++ G +EY+D EEEET MI+MT  DL   +  P    
Sbjct: 347 HKLLNSEYDEYDDEAESYTWSSLLSDGIVEYVDAEEEETIMIAMTPEDLDANKEAPNRDA 406

Query: 344 ----------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
                                T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 407 LQIEEIDSAKRIKPTISGRGHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGK 466

Query: 388 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 447
           QAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQ
Sbjct: 467 QAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQ 526

Query: 448 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 507
           EDS+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P R++T+ ++HG+Y+KLDD
Sbjct: 527 EDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRTDTLRLKHGTYEKLDD 586

Query: 508 DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLT 565
           DGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLT
Sbjct: 587 DGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLT 646

Query: 566 TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 625
           TN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD+I+NPH
Sbjct: 647 TNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVPDLIINPH 706

Query: 626 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 685
           AIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GY  RGFE MYNG
Sbjct: 707 AIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTTEAISKLLRQHGYHSRGFEVMYNG 766

Query: 686 HTGRRLTA 693
           HTG++L A
Sbjct: 767 HTGKKLMA 774


>gi|45545359|gb|AAS67527.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Aureobasidium pullulans]
          Length = 937

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/783 (58%), Positives = 567/783 (72%), Gaps = 46/783 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+G G     +KA++ GY+++RLL CALGR   DDRDH G KRLDLAGPL+  LFR+
Sbjct: 158 FLPHIGQGPDVAARKAFFLGYMVNRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRL 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            F K T+D   Y+QK V+ G+ +N+    K   +TSGLKYSLATGNWG Q      +AGV
Sbjct: 218 QFDKATKDFFRYMQKRVEAGQAINIHAGFKHPIVTSGLKYSLATGNWGDQKKLDKAKAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVL+R T+ASTLSHLRR N+PIGREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL
Sbjct: 278 SQVLSRYTFASTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI-HRDPEMLVK 238
           +LM  +T      P++ ++     E  E+  P + PQATK+FV+G W  +  RDP+ LV 
Sbjct: 338 SLMSMVTNSYETLPLMNYVLTKHVEALEDWEPRLNPQATKVFVDGVWFAVVLRDPKRLVD 397

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRD 291
            LR+LRR+   +++V +V DIR KE +I  D GR  RPLF+VE  R       L++ K  
Sbjct: 398 DLRKLRRKGVFDSQVSLVWDIREKEFKISGDSGRIVRPLFVVETDRASENLGNLVLNKDH 457

Query: 292 IIALQQRESPEDGG-----------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 339
           I  + Q    ++ G           W DL+  G +EY+D EEEET M+ MT   L  ++ 
Sbjct: 458 ITKIDQTNYLKESGFNFTDEFKPYGWQDLLESGVVEYLDAEEEETAMLVMTPEALADSKA 517

Query: 340 --------------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
                               L+P   ++ T+THCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 518 RWLGMEIESEDDPLSRNDPLLNP---HSHTFTHCEIHPSMILGVCASIIPFPDHNQSPRN 574

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL  T AM++L FR+LPAG NAIVAI
Sbjct: 575 TYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLARTMAMDYLKFRELPAGQNAIVAI 634

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           A YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y+D+EK +G  V E F RP R++T+ ++H
Sbjct: 635 ATYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYQDQEKSVGHSVVEQFERPTRADTLRLKH 694

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDK+D+DG+  PG RVSGED+I+GKT P++ D E  GQ  + + +RD S  LR +E+G
Sbjct: 695 GTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDAEELGQRQKQHVKRDVSTPLRSTESG 754

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQV+LTT +DG RF KVRVR+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T  GI 
Sbjct: 755 IVDQVMLTTTSDGHRFAKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTRGGIV 814

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMTI  LIEC + KVA   G EGDATPFT VTV  +S  L K GYQ R
Sbjct: 815 PDLIINPHAIPSRMTIAHLIECQLSKVATLRGDEGDATPFTKVTVTQVSDLLRKMGYQSR 874

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
           GFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDGG
Sbjct: 875 GFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGG 934

Query: 738 LRF 740
           LRF
Sbjct: 935 LRF 937


>gi|83415471|gb|ABC17943.1| RNA polymerase II second largest subunit, partial [Entomophthora
           muscae]
          Length = 726

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/725 (60%), Positives = 558/725 (76%), Gaps = 29/725 (4%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPL+ GLFRMLF+KLT+DV  Y+QKC++  ++ N+  A+K+  I++GL+YSLAT
Sbjct: 2   KRLDLAGPLMAGLFRMLFQKLTKDVTRYLQKCIEAKREFNMSLAVKSTIISNGLRYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A   +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQQKAMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE----EISPAVIPQATK 219
           PAETPEGQACGLVKNLALM YITVG+   P++ +LEE+  +  +    E   A I   T+
Sbjct: 122 PAETPEGQACGLVKNLALMSYITVGTDPQPLVNYLEEYMNDPAKHGDAEAEAADITDHTR 181

Query: 220 IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 279
           +F++G  +G  RDP  L+  LRRLRR  D++ E+ +VRDIR++E+R+YTD GR +RPLF+
Sbjct: 182 VFIDGVMMGQERDPLTLIYNLRRLRRNFDISPEISIVRDIRVREIRLYTDAGRVTRPLFV 241

Query: 280 VEKQRLLIKKRDIIALQQRESPE--DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
           V   ++L+KK  I  ++   SP   + G+ +L+  G +EY+   EEE ++I M++ +L +
Sbjct: 242 VRDNKILLKKHHIQYIKDGYSPSHPNYGFSNLIENGLLEYLGAHEEECSLICMSLEELEE 301

Query: 338 ARLH-----PEE---------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
            RL      PE                 Y+  +THCE+HPS++LG+CA+I+PFPDHNQSP
Sbjct: 302 VRLGRLGNLPEANAVVDMTATIKNSLVGYSYHWTHCEVHPSMVLGICATIVPFPDHNQSP 361

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMG+Y+TNYQ RMDTLA +LYYPQKPLV TR ME L FR+LPAG NAIV
Sbjct: 362 RNTYQSAMGKQAMGVYLTNYQLRMDTLANILYYPQKPLVATRGMEFLRFRELPAGQNAIV 421

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AI CYSGYNQEDSVIMNQSSIDRG FRS+++R+Y D+EKK G +  E F +P  + T+ +
Sbjct: 422 AICCYSGYNQEDSVIMNQSSIDRGLFRSIYYRTYLDQEKKAGLVEMETFEKPTSATTLRL 481

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRY--TRRDHSISLRHSE 555
           RHG+Y+KL+DDGL  PGTRVSG+D+IIGKT P+  D  +    R+  T+RD S  L+ +E
Sbjct: 482 RHGTYEKLEDDGLIAPGTRVSGDDIIIGKTAPVPPDSEELGQRRHGQTKRDVSTPLKSTE 541

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
           TG+VD+V+LT N +G+RF KVRVRS R+PQIGDKF+SRHGQKGT+GMTY  E MP++ EG
Sbjct: 542 TGIVDRVMLTINQEGMRFAKVRVRSTRVPQIGDKFASRHGQKGTIGMTYRNEGMPFSAEG 601

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           I PD+++NPHAIPSRMTIG ++EC++GKV    G EGDATPFT+VTVD IS  L K GYQ
Sbjct: 602 IVPDLVINPHAIPSRMTIGHMVECLVGKVGTLDGSEGDATPFTNVTVDGISGLLEKFGYQ 661

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 735
            RGFE MYNGHTG++LTA I+ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRD
Sbjct: 662 KRGFEVMYNGHTGKKLTAQIYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 721

Query: 736 GGLRF 740
           GGLRF
Sbjct: 722 GGLRF 726


>gi|83415463|gb|ABC17939.1| RNA polymerase II second largest subunit, partial [Cladochytrium
           replicatum]
          Length = 725

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/728 (61%), Positives = 559/728 (76%), Gaps = 36/728 (4%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAG L+GGLFR LF+K+T+++  Y++KCVD     +L++A+K   I +GL++SLAT
Sbjct: 2   KRLDLAGALMGGLFRQLFKKMTKEINNYMRKCVDTNLTFDLKWAVKGNIIKNGLQFSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q      RAGVSQVLNR TYASTLSHLR LN+PIGREGKLAKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKLNAARAGVSQVLNRYTYASTLSHLRHLNTPIGREGKLAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM  ++V S + P+LEFLE     N +EI P+ I  +T++F+N
Sbjct: 122 PAETPEGQACGLVKNLSLMACVSVASPSRPVLEFLEVLNLNNLDEIRPSQISHSTRVFLN 181

Query: 224 GCWVGIHRDP--EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           G WVGI  +   E +V  LR LRR+V+V+ E+ +VRD+R KEL IYTD GR  RPLFIV+
Sbjct: 182 GDWVGIVGESAVEEMVTELRNLRRKVEVSPELSIVRDVREKELWIYTDAGRIYRPLFIVD 241

Query: 282 KQ--RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
           ++     I++R +  +  RE   D    DL+ +G +EYIDT EEET MI+M+ +DL Q R
Sbjct: 242 EKTHHTFIQRRHVTQIHNRELNFD----DLLVEGLVEYIDTLEEETIMIAMSQSDLTQTR 297

Query: 340 --------------LHPEE------------AYADTYTHCEIHPSLILGVCASIIPFPDH 373
                         L+P              AY+  +THCEIHP++ILG+CASIIPFPDH
Sbjct: 298 TYLLQQADPDIELPLNPHANDTSYRLKPNAGAYSQQWTHCEIHPAMILGICASIIPFPDH 357

Query: 374 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 433
           NQSPRNTYQSAMGKQAMG ++TNY  R DT+  +L+YPQKPL TTR+ME+L FR+LPAG 
Sbjct: 358 NQSPRNTYQSAMGKQAMGTFLTNYLLRYDTMMNILFYPQKPLGTTRSMEYLRFRELPAGQ 417

Query: 434 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 493
           NA VAIACYSGYNQEDS+IMN SSIDRG FRS+++R Y D+EKK+G L  E F +P R  
Sbjct: 418 NACVAIACYSGYNQEDSIIMNXSSIDRGLFRSMYYRVYMDQEKKVGMLQTETFEKPTRET 477

Query: 494 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASRYTRRDHSISLR 552
           T+ +RHG+Y+KL+DDGL  PG RVSG+D+IIGKT P+ ++ +  GQ    T+RD S  L+
Sbjct: 478 TLRLRHGTYEKLEDDGLIAPGMRVSGDDIIIGKTVPLQTESDELGQRQAQTKRDASTPLK 537

Query: 553 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
            +E G+VD VL+TTN+DG +F+KVRVRSVRIPQ+GDKF+SRHGQKGTVGMTY QEDMP+T
Sbjct: 538 STEQGIVDSVLVTTNSDGYKFIKVRVRSVRIPQMGDKFASRHGQKGTVGMTYRQEDMPFT 597

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
            EGI+PD+IVNPHAIPSRMTIG L+EC++ KVA   G+EGDATPFTD+TV  +S  L++ 
Sbjct: 598 AEGISPDLIVNPHAIPSRMTIGHLVECLLSKVATLTGREGDATPFTDLTVHQVSDLLYEH 657

Query: 673 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 732
           G+Q RGFE +YNGHTG++L A +F+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGR
Sbjct: 658 GHQQRGFEVLYNGHTGKKLRAQLFMGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 717

Query: 733 SRDGGLRF 740
           SRDGGLRF
Sbjct: 718 SRDGGLRF 725


>gi|396941839|gb|AFN89637.1| RNA polymerase II, partial [Saccharomycodes ludwigii]
          Length = 782

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/733 (61%), Positives = 558/733 (76%), Gaps = 40/733 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E +KA++ GY+++RLLLCAL R+ +DD DH+G KRLDLAGPLL  LFR 
Sbjct: 50  FLPHITQLEGFEGRKAFFXGYMVNRLLLCALDRKDQDDXDHFGKKRLDLAGPLLAQLFRT 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  ++Q+ V+  KD NL+ A+KA T+T GLKY+LATGNWG Q  A  +RAGV
Sbjct: 110 LFKKLTRDIFRFMQRSVEEAKDFNLKLAVKAXTLTXGLKYALATGNWGEQKKAMTSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T
Sbjct: 230 SLMSCISVGTDPSPIITFLNEWGMEPLEDYVPYQSPDATRVFVNGVWHGIHRNPAKLVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
           +++LRRR D+  EV +VRDIR KEL+I+TD GR  RPLF+VE       + L ++K  I 
Sbjct: 290 IKKLRRRGDITPEVSIVRDIREKELKIFTDAGRVYRPLFLVEDNEDTGIKELKVRKGHIR 349

Query: 294 ALQQRESPE-DGG----------------WHDLVAKGFIEYIDTEEEETTMISMTINDL- 335
            L   E  + +GG                W  L++ G +EYID EEEET +I+M   DL 
Sbjct: 350 KLMITEYHDIEGGFDEEDEDDDNEKTNYTWSSLLSDGLVEYIDAEEEETILIAMQREDLD 409

Query: 336 --------VQARLHPEEA-----YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                   ++  L P        +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQ
Sbjct: 410 PGISANPDLEEELDPARRIKNIYHASTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQ 469

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMG+++TNY FRMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACY
Sbjct: 470 SAMGKQAMGVFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACY 529

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDS+IMNQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+Y
Sbjct: 530 SGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTY 589

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVD 560
           DKLDDDGL  PG RVSG+D+IIGKTTPI+ D  E   + + +T+RD S  LR +E G++D
Sbjct: 590 DKLDDDGLMSPGVRVSGDDIIIGKTTPIAPDTEELGLRTAFHTKRDASTPLRSTENGIID 649

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+
Sbjct: 650 QVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDL 709

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE
Sbjct: 710 IINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFE 769

Query: 681 TMYNGHTGRRLTA 693
            MYNGHTG++L A
Sbjct: 770 VMYNGHTGKKLMA 782


>gi|396941901|gb|AFN89668.1| RNA polymerase II, partial [Yamadazyma triangularis]
          Length = 783

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/735 (61%), Positives = 558/735 (75%), Gaps = 42/735 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +   T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQDEGFATRKAFFLGYMVNRLLLCALERKEPDDRDHFGRKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLTRD+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFKKLTRDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E   P+  P AT+ FVNG WVG HR+P +LV+T
Sbjct: 229 SLMSCISVGTPSEPILLFLEEWGMEPLENYVPSHSPDATRCFVNGVWVGTHREPALLVET 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR+ D++ EV ++RDIR KE +I+TD GR  RPLF+V+       K  L + K  I
Sbjct: 289 IRNLRRKGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDNPDSDTKGDLKLTKDHI 348

Query: 293 IALQQRESPE--------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV-------- 336
             L + E  +        + GW  LV +G IEY+D EEEET MI+MT  DL         
Sbjct: 349 NRLMRAEYSDYDAYDDESEYGWSSLVNEGVIEYVDAEEEETIMIAMTPEDLEASKSTLSE 408

Query: 337 --QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
             Q  L  +E   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 409 SEQKSLQMQEQELDPAKRIKPTYVGSLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT 468

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIA
Sbjct: 469 YQSAMGKQAMGLFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIA 528

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG
Sbjct: 529 CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHG 588

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
           +YDKLD+DG+  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 589 TYDKLDEDGIITPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGL 648

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GITP
Sbjct: 649 VDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTRQGITP 708

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GY  RG
Sbjct: 709 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEEISKLLREHGYHSRG 768

Query: 679 FETMYNGHTGRRLTA 693
           FE MYNGHTG++L A
Sbjct: 769 FEVMYNGHTGKKLMA 783


>gi|6606111|gb|AAF19068.1|AF107796_1 DNA-dependent RNA polymerase II RPB140 [Exophiala jeanselmei]
          Length = 937

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/780 (59%), Positives = 565/780 (72%), Gaps = 40/780 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+G G    TKKA++ GY+++RLL  ALGR   DDRDH G KRLDLAGPL+  LFR+
Sbjct: 158 FLPHIGQGPDVATKKAFFLGYMVNRLLKAALGRAEPDDRDHLGKKRLDLAGPLMTNLFRL 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            F K T+D   Y+QK V+ G+ +++    K   ITSGLKYSLATGNWG Q      +AGV
Sbjct: 218 QFDKATKDFFRYMQKRVEAGQPISIHAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVL+R T+ASTLSHLRR N+PIGREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL
Sbjct: 278 SQVLSRYTFASTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI-HRDPEMLVK 238
           +LM  +T      P+  ++     +  EE  P + PQATKIF++G W  +  RDP+ LV 
Sbjct: 338 SLMSMVTNSYETEPLRAYVLNKHVDAIEEWEPRLNPQATKIFIDGVWFAVVLRDPKRLVD 397

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRD 291
            LRRLRR+   + +V +V DIR KE RI  D GR  RPLF+VE  +       L++ K  
Sbjct: 398 DLRRLRRQGTFDAQVSLVWDIREKEFRISGDSGRIIRPLFVVETDKASENVGNLVLNKEH 457

Query: 292 IIALQQRESPEDGG-----------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 340
           I  L Q    ++ G           W DL+  G +EY+D EEEET MI MT   L  ++ 
Sbjct: 458 INKLDQTNYLKESGYQFNDEVSAYGWDDLLKAGVVEYLDAEEEETAMIVMTPEVLADSKA 517

Query: 341 H----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                  E + D              ++THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 518 RWLGIEIENFDDPLGRNEPLLTPNSHSFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 577

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL  T AM++L FR+LPAG NAIVAIACY
Sbjct: 578 SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLARTMAMDYLKFRELPAGQNAIVAIACY 637

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSSIDRG FRSLF+R+Y+D+EK +G  V E F +P R++T+ ++HG+Y
Sbjct: 638 SGYNQEDSVIMNQSSIDRGLFRSLFYRAYQDQEKSVGHAVIESFEKPTRADTLRLKHGTY 697

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DK+D+DG+  PG RVSGED+I+GKT P++ D E  GQ  + + +RD S  LR +E+G+VD
Sbjct: 698 DKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDAEELGQRQKQHVKRDVSTPLRSTESGIVD 757

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QV+LTT  DG RF KVRVR+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+
Sbjct: 758 QVMLTTTNDGHRFAKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDL 817

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTI  LIEC + KVA   G+EGDATPFT VTV  IS  L K GYQ RGFE
Sbjct: 818 IINPHAIPSRMTIAHLIECQLSKVATLRGEEGDATPFTKVTVTQISDILRKMGYQSRGFE 877

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
            MYNGHTG++L A +FLGPTYYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDGGLRF
Sbjct: 878 VMYNGHTGKKLVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937


>gi|110669602|gb|ABG81896.1| RNA polymerase II second largest subunit [Lecanora hybocarpa]
          Length = 703

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/704 (64%), Positives = 555/704 (78%), Gaps = 38/704 (5%)

Query: 47  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 106
           LDLAGPLL GLFRMLF KLT+DV  Y+QKCV++ K+ NL  A+K+ T+T+GLKYSLATGN
Sbjct: 1   LDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVEHNKEFNLTLAVKSTTLTNGLKYSLATGN 60

Query: 107 WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 165
           WG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPA
Sbjct: 61  WGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 120

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALM YITVG+ + P+++F+     E  EE  P   P ATKIFVNG 
Sbjct: 121 ETPEGQACGLVKNLALMCYITVGTPSEPLIDFMISKSMEVLEEYEPVNSPHATKIFVNGV 180

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR- 284
           WVG+HRDP  LV+ +  LRR + ++ EV +VRDIR +E +I+TD GR  RPLF+++++  
Sbjct: 181 WVGVHRDPARLVQMVLALRRGLTISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDQKTG 240

Query: 285 -LLIKKRDIIAL------------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 331
            L++ K DI  L            Q+RE     GWH LV +G +EY+D EEEET MI MT
Sbjct: 241 DLVLTKDDIEKLAVDKEISASLDAQERED-RHLGWHGLVERGVVEYVDAEEEETIMIVMT 299

Query: 332 INDL-----VQARLH-PEE--------------AYADTYTHCEIHPSLILGVCASIIPFP 371
            +DL     +QA +  PEE              A+A T+THCEIHPS+ILG+CASIIPFP
Sbjct: 300 PDDLEISRCIQAGMTIPEEDPEDVNKRRKANASAHAHTWTHCEIHPSMILGICASIIPFP 359

Query: 372 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
           DHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 360 DHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 419

Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
           G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P R
Sbjct: 420 GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGLAVLEQFEKPMR 479

Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 549
           S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+RD S 
Sbjct: 480 SDTLKLKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPMAPDAEELGQRTKAHTKRDVST 539

Query: 550 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 609
            LR +E G+VDQVL++TNADGLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 540 PLRSTENGIVDQVLMSTNADGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 599

Query: 610 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           P+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++S+ L
Sbjct: 600 PFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEVTVDSVSRLL 659

Query: 670 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
            + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 660 RQNGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 703


>gi|94410910|gb|ABF18576.1| RNA polymerase II second largest subunit, partial [Gymnopus
           contrarius]
          Length = 693

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/694 (65%), Positives = 543/694 (78%), Gaps = 25/694 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYMQKCVEQHKEFNLALAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-TT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+R+LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIRKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQ--QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
           IVE Q+L+++K+ I  L   Q +   +  W  LV  G IE +D EEEET MISMT  DL 
Sbjct: 240 IVENQQLVLQKKHIKWLSSGQNDEGSEFKWEHLVKSGIIELLDAEEEETVMISMTPEDLE 299

Query: 337 QARLHPEEA-------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
            +RL  +                      A T+THCEIHPS+ILG+CASIIPF     SP
Sbjct: 300 NSRLQQQGVDPHTNDGDFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFXXXXXSP 359

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 360 RNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 419

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M
Sbjct: 420 AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRM 479

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
           +HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E
Sbjct: 480 KHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTE 539

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
           +G+VDQVL+TTN++G +FVKVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 540 SGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEG 599

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           I PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ
Sbjct: 600 IVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSMFLRQKGYQ 659

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
            RG E M++GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660 SRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMV 693


>gi|52699816|gb|AAU86970.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
           jenensis]
          Length = 714

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/714 (63%), Positives = 553/714 (77%), Gaps = 38/714 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH G KRLDLAGPL+ GLFRMLF KLT+DV  Y+QKCV++GK+ NL   +K+ T+T+GLK
Sbjct: 1   DHXGKKRLDLAGPLMAGLFRMLFNKLTKDVYQYLQKCVESGKEFNLALGVKSTTLTNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVGS + PI+EF+     E  EE  P   P +T
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFIVSRNMEVLEEYEPTRNPHST 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T++ LRR+  +++EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPAHLVSTVQTLRRQNMISSEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVEKQR-------LLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 320
           +V+  +       L++ K  I  L+  RE P D           GW  LVA G IE++D 
Sbjct: 241 VVDNDKKSPNKGALVLTKELINKLEDDRELPADMDPDEKKERYFGWAGLVANGAIEFLDA 300

Query: 321 EEEETTMISMTINDL-----------------VQARLHPEEAYADTYTHCEIHPSLILGV 363
           EEEET MI+MT  DL                 + AR+  +     T+THCEIHPS+ILG+
Sbjct: 301 EEEETVMIAMTPEDLEISRHMQMGYTIEQNTDINARVKAKINARTTWTHCEIHPSMILGI 360

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT++ +LYYPQKPL TTRAME 
Sbjct: 361 CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMSNILYYPQKPLGTTRAMEF 420

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY ++EK++G  + 
Sbjct: 421 LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYMEQEKRVGISLV 480

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY 542
           E F +P RS T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ +++
Sbjct: 481 EQFEKPLRSETLRVKHGTYDKLDDDGIIAPGVRVSGEDIIIGKTAPIAPDSEEMGQRTKF 540

Query: 543 -TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
            T+RD S  LR +E G+VD+VL+TTNA+GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G
Sbjct: 541 HTKRDASTPLRSTENGIVDKVLVTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIG 600

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP+T +GI PD+I+NPHAIPSRMTI  LIEC++ KV+A  G EGDATPFTD+T
Sbjct: 601 ITYRQEDMPFTADGIPPDLIINPHAIPSRMTIAHLIECLLSKVSALRGCEGDATPFTDIT 660

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           VD++S  L   GYQ RGFE MYNGHTGR+L A IFLGPTYYQRL+HMVDDKI +
Sbjct: 661 VDSVSDLLRGHGYQSRGFEIMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIXA 714


>gi|354992145|gb|AER45779.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 543/687 (79%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P+ TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVPR-TKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|83415465|gb|ABC17940.1| RNA polymerase II second largest subunit, partial [Dimargaris
           bacillispora]
          Length = 723

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/722 (61%), Positives = 556/722 (77%), Gaps = 26/722 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+D+AGPL+  LF+ML  K+++++  Y+QKC+D G+D NL  A+KA T+T+GLKYSLAT
Sbjct: 2   KRMDMAGPLMAQLFKMLLLKMSKEIGRYLQKCIDAGRDFNLTLAVKANTMTAGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q+    TRAGVSQVLNR T+AST SHLRR N+PIGR+GKLAKPRQLHN+ WG++C
Sbjct: 62  GNWGDQSKFMQTRAGVSQVLNRYTFASTXSHLRRCNTPIGRDGKLAKPRQLHNTHWGIVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM +I++G     ++E L+E   EN EE++P+ I QATK+F+N
Sbjct: 122 PAETPEGQACGLVKNLSLMSHISIGVTEKKLVELLDETAVENLEEVAPSSIAQATKVFIN 181

Query: 224 GCWVGIHR-DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 282
           G WVGI+  +   L +  R LR+      ++ VV D R +E+R  +D GR  RPLF+V  
Sbjct: 182 GRWVGIYSGNGHELYERYRVLRQTQVELVDITVVYDPREREVRTLSDAGRVCRPLFVVRN 241

Query: 283 QRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
           QR+L+ +  I AL  R    DG    ++ LV  G I+Y+D EEEET MI M+  DL  +R
Sbjct: 242 QRILLNRGHISALHNRVDRGDGKPFDFNTLVNFGVIDYMDAEEEETAMICMSSEDLADSR 301

Query: 340 LHPEEAYAD-------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           +  E  Y +                   ++THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 302 MFYEHGYVNDQDRDSTARVKGTSALYIHSWTHCEIHPSMILGICASIIPFPDHNQSPRNT 361

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMGI++T+YQ RMDTLA +LYYPQK L TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 362 YQSAMGKQAMGIFLTSYQSRMDTLANILYYPQKLLATTRSMEYLRFRELPAGQNAIVAIL 421

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLF+RSY+D+EK++G  V E F +P R  T+ ++HG
Sbjct: 422 CYSGYNQEDSLIMNQSSIDRGLFRSLFYRSYQDQEKRLGMTVMESFDKPTRETTVRLKHG 481

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGM 558
           +Y+KL+DDGL  PG RVSG+D+IIGKT P+  D  + GQ    +  +D S  LR +ETG+
Sbjct: 482 TYEKLEDDGLIAPGIRVSGDDIIIGKTAPLPDDTTELGQRVVTHANKDVSTPLRSTETGI 541

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQV+LTTN DGL+FVKVR+RS R+PQ+GDKF+SRHGQKGT+G+TY  EDMP++ EGITP
Sbjct: 542 VDQVMLTTNQDGLKFVKVRIRSTRVPQMGDKFASRHGQKGTIGITYRTEDMPFSREGITP 601

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTIG L+EC++ K++   G EGDATPFTDVTV+ IS+AL   GYQ RG
Sbjct: 602 DLIINPHAIPSRMTIGHLVECLLSKLSTLTGSEGDATPFTDVTVEAISEALAANGYQQRG 661

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 738
           FE +YNGHTGR+LTA +F GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGL
Sbjct: 662 FEVLYNGHTGRKLTAQVFFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGL 721

Query: 739 RF 740
           RF
Sbjct: 722 RF 723


>gi|354992123|gb|AER45768.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 542/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRD+R KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDVREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992111|gb|AER45762.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
 gi|354992133|gb|AER45773.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 542/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992129|gb|AER45771.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/687 (65%), Positives = 542/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGHNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992135|gb|AER45774.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
 gi|354992139|gb|AER45776.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/687 (65%), Positives = 542/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|52699853|gb|AAU86988.1| DNA-dependent RNA polymerase II second largest subunit [Placynthium
           nigrum]
          Length = 716

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/714 (63%), Positives = 550/714 (77%), Gaps = 41/714 (5%)

Query: 41  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 100
           H+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GLKY
Sbjct: 1   HFGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLKY 60

Query: 101 SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 159
           SLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 61  SLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 120

Query: 160 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 219
           G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK
Sbjct: 121 GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATK 180

Query: 220 IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 279
           +FVNG WVG+HRDP  LV T+  LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+
Sbjct: 181 VFVNGVWVGVHRDPAHLVSTVLSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFV 240

Query: 280 VEKQ-------RLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTE 321
           ++          L++ K  I+ L+  +       PE+      GW  LV +G +EY+D E
Sbjct: 241 IDNDPKSANCGSLVLTKEHILKLEDDKELGANMDPEEREAKFMGWQGLVNQGVVEYVDAE 300

Query: 322 EEETTMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHPSLIL 361
           EEET MI MT  DL     +QA    EE   D               T+THCEIHPS+IL
Sbjct: 301 EEETVMIVMTPEDLEISKHLQAGFPLEEPSIDDPNRRVKAPLNPTAHTWTHCEIHPSMIL 360

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           G+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+M
Sbjct: 361 GICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDLRMDTMANILYYPQKPLATTRSM 420

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  
Sbjct: 421 EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMS 480

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 540
           V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ +
Sbjct: 481 VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRT 540

Query: 541 R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           + + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT
Sbjct: 541 KLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGT 600

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           +G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601 IGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 660

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 661 VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 714


>gi|94410920|gb|ABF18579.1| RNA polymerase II second largest subunit, partial [Hemimycena
           gracilis]
          Length = 689

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/690 (65%), Positives = 545/690 (78%), Gaps = 24/690 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSQNP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+Y D GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYADAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDI--IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+L ++K+ +  I   + +  E   W DLV +G +E +D EEEET MISMT  DL  +R
Sbjct: 240 NQQLALQKKHVRWITEGKDDQGEQFKWGDLVRRGIVELLDAEEEETVMISMTPEDLETSR 299

Query: 340 LHPEEAYAD------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
           L  +    D                  T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 300 LQQQGMNQDEDEDFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 359

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMGI++TN+  RMDT+A +L YPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 360 QSAMGKQAMGIFLTNFLIRMDTMANILCYPQKPLATTRSMEYLKFRELPAGQNAIVAILC 419

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 420 YSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGINQLEEFDKPTRDTTLRMKHGT 479

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+V
Sbjct: 480 YDKLEDDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRMHTRRDVSTPLKSTESGVV 539

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVL+TTN+DG +FVKVRVRS+R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 540 DQVLITTNSDGQKFVKVRVRSIRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPD 599

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           II+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG 
Sbjct: 600 IIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGL 659

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660 EVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 689


>gi|354992121|gb|AER45767.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  934 bits (2413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 541/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D+  EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDIGPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992125|gb|AER45769.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  934 bits (2413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 542/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +F+K+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFIKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|396941893|gb|AFN89664.1| RNA polymerase II, partial [Meyerozyma guilliermondii]
          Length = 786

 Score =  934 bits (2413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/739 (61%), Positives = 557/739 (75%), Gaps = 46/739 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 48  LLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRI 107

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+Q+CV+N K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 108 LFKKLTKDIYNYMQRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 167

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 168 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 227

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 228 SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 287

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I
Sbjct: 288 MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHI 347

Query: 293 IALQQRESPEDG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
             L   E  E+             GW  LV  G +EY+D EEEET MI+MT  DL     
Sbjct: 348 HKLLNAEYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKS 407

Query: 336 -----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
                 Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQS
Sbjct: 408 SLTATQQKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQS 467

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAI
Sbjct: 468 PRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAI 527

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ 
Sbjct: 528 VAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLR 587

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHS 554
           ++HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +
Sbjct: 588 LKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRST 647

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E+G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +
Sbjct: 648 ESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQ 707

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GI PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GY
Sbjct: 708 GIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGY 767

Query: 675 QMRGFETMYNGHTGRRLTA 693
           Q RGFE MY+GHTG++L A
Sbjct: 768 QSRGFEVMYHGHTGKKLMA 786


>gi|396941793|gb|AFN89614.1| RNA polymerase II, partial [Cyberlindnera americana]
          Length = 763

 Score =  934 bits (2413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/714 (63%), Positives = 547/714 (76%), Gaps = 32/714 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET+KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHISQAQGMETQKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLSNLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+ D+  Y+Q+ V+ G D NL+ A+K  TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLSNDIYRYMQRSVETGADFNLKIAVKPTTITSGLKYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ---ATKIFVNGCWVGIHRDPEML 236
           +LM  I+VG+ + PIL FLEEWG E   E  P        ATKIFVNG W G+H+D   L
Sbjct: 230 SLMTCISVGTGSDPILWFLEEWGMEPLSEYKPTKDDSEGTATKIFVNGVWHGVHKDAAKL 289

Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKR 290
            +T+R LRRR +++ EV ++RDIR KE R++TD GR  RPLFIVE      K+ L +KK 
Sbjct: 290 TETMRILRRRGEISAEVSIIRDIREKEFRVFTDAGRVYRPLFIVEENHETGKKELALKKE 349

Query: 291 DIIALQQRE--------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL------- 335
           ++  L + E          E  GW  L+  G +EY+D EEEET MI+M+  DL       
Sbjct: 350 NVNKLLESEYEAVDEETGEESYGWSSLLNNGIVEYVDAEEEETIMIAMSPEDLEPIDDVD 409

Query: 336 ----VQARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
                 AR+ P     A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 410 DVVDPNARIKPAFNKSAHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 469

Query: 391 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 450
           G+++TNY  RMDT+A +LYYPQKPL TTR+MEHL FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 470 GVFLTNYSVRMDTMANILYYPQKPLATTRSMEHLKFRELPAGQNAIVAIACYSGYNQEDS 529

Query: 451 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 510
           +IMNQSSIDRG FRSLFFRSY D+EK++G  V E+F +P+RSNT+ ++HG+Y+KLDDDGL
Sbjct: 530 MIMNQSSIDRGLFRSLFFRSYMDQEKRVGMSVVEEFEKPNRSNTLRLKHGTYEKLDDDGL 589

Query: 511 APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 568
             PG RVSGED+IIGKTTPI  D E  GQ + Y T+RD S  LR +E G+VDQVL+TTN 
Sbjct: 590 IAPGVRVSGEDIIIGKTTPIPPDIEELGQRTVYHTKRDASTPLRATENGIVDQVLITTNQ 649

Query: 569 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
           +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIP
Sbjct: 650 EGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRREDMPFTSEGIVPDLIINPHAIP 709

Query: 629 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 682
           SRMT+  LIEC++ KV+A  G EGDA+PFTDVTVD IS  L + GYQ RGFE M
Sbjct: 710 SRMTVAHLIECLLSKVSAISGMEGDASPFTDVTVDAISNLLREHGYQSRGFEVM 763


>gi|354992115|gb|AER45764.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/687 (65%), Positives = 542/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQRKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992137|gb|AER45775.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 541/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGL KNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLAKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|330040234|ref|XP_003239811.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
            paramecium]
 gi|327206736|gb|AEA38913.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
            paramecium]
          Length = 1209

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/850 (53%), Positives = 589/850 (69%), Gaps = 34/850 (4%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHVG G   E +K ++FGY++++LLL  LG +  DDRDHYG KRLD   PLL  LFR 
Sbjct: 372  FLPHVGIGQGFELRKGFFFGYMVNKLLLVQLGNKKVDDRDHYGYKRLDTVSPLLSVLFRQ 431

Query: 61   LFRKLTRDVRAYVQKCVDNGKDV-NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGV 119
            L  K T+D+R  ++K  +  K+   +    K   IT+G+ YSLATGNW   N    + GV
Sbjct: 432  LVNKATKDLRMSLEKKTNLEKNTFQISDIFKFNLITTGMFYSLATGNWS-TNGQTMKTGV 490

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR+ Y STLSHLR++NS      KL KPRQLHN+ WG++CP ETPEG +CGLVKNL
Sbjct: 491  SQVLNRINYMSTLSHLRKINSTGINVSKLTKPRQLHNTYWGLICPVETPEGHSCGLVKNL 550

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            A+  YIT+GS++ P+ EFLEE   +NF EI    I    KIF+N CW+G++  P+ + KT
Sbjct: 551  AISAYITLGSSSMPVFEFLEELKIKNFNEIKVQNIRFYYKIFLNDCWIGVYDKPDTIAKT 610

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDI---IALQ 296
            LR  RR  + N E+ V+   + KE++IYTD GR  RPL + E  +   K + I   I++ 
Sbjct: 611  LRCFRRSGNTNQELSVIIFHKDKEIKIYTDAGRVCRPLIVSELVKFNKKNQYIVKSISVN 670

Query: 297  QRESP-----EDGGWHDLVAKGFIEYIDTEEEETTMISM-------TINDLVQARLHPEE 344
            Q             + +L+  G IE+ID EEE+T +I M        IN+L+        
Sbjct: 671  QYNFDVLTIGNKCTFTELIRNGLIEFIDAEEEKTCVIGMYVFEGIKNINNLI-------- 722

Query: 345  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 404
                T+TH EIHPS+I+G+CAS IPF  HNQSPRNTYQ+AMGKQ++GIY  N+Q RMDT+
Sbjct: 723  ----TFTHFEIHPSMIMGICASFIPFSHHNQSPRNTYQAAMGKQSIGIYSLNFQHRMDTM 778

Query: 405  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 464
            A++LYYPQKPLVTTR + +   +  P GINAIVA ACY+GYNQEDS+IM+Q SIDRG FR
Sbjct: 779  AHILYYPQKPLVTTRFLNYSASKNFPNGINAIVATACYTGYNQEDSIIMSQDSIDRGLFR 838

Query: 465  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 524
            S+F+R YRDEEKK     KE F  P++S  +G++ GSY+KLD DG    G+R+SGEDVII
Sbjct: 839  SVFYRCYRDEEKKKTNGFKETFEIPNKSECIGLKIGSYEKLDLDGFVQEGSRISGEDVII 898

Query: 525  GKTTPISQDEAQGQ-----ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 579
            GKT P +   +Q +      +   ++D SI  R+ E G+VD++++ T+  G R VK+R+R
Sbjct: 899  GKTVPFTNGISQKKILKFKKNPKYKKDASILARNCEVGVVDKIMIGTSEYGNRLVKIRIR 958

Query: 580  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 639
            S+RIPQ+GDKF+SRHGQKG +GM Y Q D+P+T EG++PDII+NPHAIPSRMTIG + EC
Sbjct: 959  SIRIPQVGDKFASRHGQKGILGMAYKQYDLPFTTEGMSPDIIMNPHAIPSRMTIGHVYEC 1018

Query: 640  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 699
            ++ K++A  G EGD TPF+ ++++ I K L   GY   G+E M NG TG+ L  +IF+GP
Sbjct: 1019 LLAKISAISGIEGDGTPFSSISIEKIMKHLKNYGYDKSGWEAMINGFTGKFLKNLIFIGP 1078

Query: 700  TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 759
            TYYQ+LKHMVDDKIHSR RGPVQILTRQP EGRSR GGLRFGEMERDC+++HG+  FLK+
Sbjct: 1079 TYYQKLKHMVDDKIHSRSRGPVQILTRQPVEGRSRYGGLRFGEMERDCILSHGSIVFLKD 1138

Query: 760  RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 819
            RL DQSD + + VC+ CGLIAI N K   FECR C NK  I  + IPYACKLL QEL+A+
Sbjct: 1139 RLLDQSDPFVIFVCDLCGLIAIGNRKLKIFECRSCDNKMFISLIKIPYACKLLLQELIAL 1198

Query: 820  AIAPRMLTKE 829
            +I PRM+  E
Sbjct: 1199 SIGPRMIPGE 1208


>gi|379773375|gb|AFD18893.1| RNA polymerase II second largest subunit, partial [Pleurotus
           eryngii]
          Length = 687

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 541/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR  YASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYAYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEFDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992141|gb|AER45777.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/687 (65%), Positives = 541/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEGLGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+ HTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHSHTGRKLQAQVYLGPTYYQRLKH 687


>gi|300394728|gb|ADK11902.1| DNA-directed RNA polymerase II subunit two, partial [Piloderma
           fallax]
          Length = 686

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/686 (65%), Positives = 542/686 (79%), Gaps = 25/686 (3%)

Query: 38  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 97
           DRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+G
Sbjct: 2   DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNG 61

Query: 98  LKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 156
           LKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN
Sbjct: 62  LKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHN 121

Query: 157 SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 216
           + WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P 
Sbjct: 122 THWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSSTP- 180

Query: 217 ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 276
            TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RP
Sbjct: 181 CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRP 240

Query: 277 LFIVEKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 334
           LFIVE Q+L ++K+ I  L Q   +  E+  W  LV  G IE +D EEEET MISMT  D
Sbjct: 241 LFIVENQQLALQKKHIKWLNQGFDDEDEEFKWEQLVKGGIIELLDAEEEETVMISMTPED 300

Query: 335 LVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL       H  ++  D            T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 301 LENSRLQSSGVDPHANDSDFDPAARLKAGTDAHTWTHCEIHPSMILGICASIIPFPDHNQ 360

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 361 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 420

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+
Sbjct: 421 IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRENTL 480

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R + RRD S  L+ 
Sbjct: 481 RMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHNRRDVSTPLKS 540

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G+VDQVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 541 TENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 600

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + G
Sbjct: 601 EGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKG 660

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGP 699
           YQ RG E MY+GH+GR+L A ++LGP
Sbjct: 661 YQSRGLEVMYHGHSGRKLQAQVYLGP 686


>gi|354992117|gb|AER45765.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/687 (65%), Positives = 541/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +L ++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLFLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992143|gb|AER45778.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/687 (65%), Positives = 542/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ +L  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFDLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992127|gb|AER45770.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 541/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KE R+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKEPRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|189006590|gb|ABF18587.2| RNA polymerase II second largest subunit [Infundibulicybe gibba]
          Length = 689

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/690 (65%), Positives = 545/690 (78%), Gaps = 25/690 (3%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           M+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+
Sbjct: 121 MVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKV 179

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG W+G+ RDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIV
Sbjct: 180 FVNGVWMGVXRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIV 239

Query: 281 EKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           E Q+L+++K+ +  L     +  ++  W  L+  G IE +D EEEET MISMT  DL  +
Sbjct: 240 ENQQLVLQKKHVKWLNHGINDDGDEFKWEQLIKGGIIELLDAEEEETVMISMTPEDLENS 299

Query: 339 RL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           RL       H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 300 RLQQSGVDPHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 359

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360 TYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+H
Sbjct: 420 LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPMRDNTLRMKH 479

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G
Sbjct: 480 GTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESG 539

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVL+TTN++G +FVKVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 540 IVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIV 599

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ R
Sbjct: 600 PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSR 659

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           G E M++GHTGR+L A ++LGPTYYQRLKH
Sbjct: 660 GLEVMFHGHTGRKLQAQVYLGPTYYQRLKH 689


>gi|410610285|gb|AFV74911.1| RNA polymerase II second largest subunit, partial [Loranthus kaoi]
          Length = 480

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/480 (93%), Positives = 470/480 (97%)

Query: 231 RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 290
           RDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK++
Sbjct: 1   RDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKEK 60

Query: 291 DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 350
           DI  LQQRE+ E+GGWH+LVAKGFIEYIDTEEEETTMISMTI+DLV AR++P +AY++TY
Sbjct: 61  DIQVLQQRETAEEGGWHELVAKGFIEYIDTEEEETTMISMTISDLVSARMNPVDAYSETY 120

Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
           THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY
Sbjct: 121 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 180

Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
           PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS
Sbjct: 181 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 240

Query: 471 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 530
           YRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAP GTRVSGEDVIIGKT+PI
Sbjct: 241 YRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPSGTRVSGEDVIIGKTSPI 300

Query: 531 SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
           +QDE+QGQASR+T+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 301 AQDESQGQASRFTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 360

Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
           SSRHGQKGT+GMTYTQEDMPWTVEGI PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK
Sbjct: 361 SSRHGQKGTIGMTYTQEDMPWTVEGINPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 420

Query: 651 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVD
Sbjct: 421 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVD 480


>gi|354992109|gb|AER45761.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 541/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS +  ++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISASVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992113|gb|AER45763.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 541/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L  R+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKSRKLPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|396941801|gb|AFN89618.1| RNA polymerase II, partial [Ogataea minuta]
          Length = 785

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/736 (60%), Positives = 555/736 (75%), Gaps = 43/736 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAY+ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHISQDSGYETNKAYFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+C++ G D N+  A+K+ TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLSRDIYRYMQRCIERGDDFNVVSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  ++VGSA+ PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV T
Sbjct: 230 SLMSCVSVGSASEPITYLLEEWGLEQLSDYEPQEHKHATRVFLNGNWVGTHRDPAMLVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R+LRR   ++ EV ++RDIR +E +I+TD GR  RPLF+V+       K  L + K D 
Sbjct: 290 MRQLRRSGTISPEVSLIRDIREREFKIFTDAGRIYRPLFVVDDDPDSEHKGELKLTKEDC 349

Query: 293 IALQQRESPE---------DG----------GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
             +  RE  E         DG          GW  L++ G IEY+D EEEET +I+M+  
Sbjct: 350 RKILDREVEEVAQDEDYDDDGEPLEPIQRIYGWDSLLSNGVIEYLDAEEEETVLIAMSPE 409

Query: 334 DLV---------QARLHPEEAYAD-----TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           DL+         Q  + P +   +     ++THCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 410 DLIPTSEAEVIRQVEMDPAKRIKNVVKTHSFTHCEIHPSMILGVAASIIPFPDHNQSPRN 469

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL  T++ME+L FR+LPAG NAIVAI
Sbjct: 470 TYQSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLAKTQSMEYLKFRELPAGQNAIVAI 529

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           ACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  V EDF +P R++T+G + 
Sbjct: 530 ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRNGISVVEDFEKPMRASTLGFKQ 589

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
           G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 590 GTYEKLDDDGLIAPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTESG 649

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVLLTTNA+GL+F KVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI 
Sbjct: 650 IVDQVLLTTNAEGLKFAKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIV 709

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ R
Sbjct: 710 PDLIINPHAIPSRMTVAHLIECLLSKVASMRGYEGDATPFTDLTVDAVSKLLRENGYQSR 769

Query: 678 GFETMYNGHTGRRLTA 693
           GFE MYNGHTG++L A
Sbjct: 770 GFEVMYNGHTGKKLMA 785


>gi|68131856|gb|AAY85206.1| RNA polymerase II second largest subunit [Embothrium coccineum]
          Length = 706

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/460 (94%), Positives = 452/460 (98%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 247 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 306

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
           LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 307 LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 366

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLA
Sbjct: 367 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 426

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTL
Sbjct: 427 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 486

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIV+KQRLLIKK+D+ ALQQRES
Sbjct: 487 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVDKQRLLIKKKDVRALQQRES 546

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
           P+DGGWHDLVAKGFIEYIDTEEEETTMISMTINDL+ ARLHPEEAY++TYTHCEIHPSLI
Sbjct: 547 PDDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLISARLHPEEAYSETYTHCEIHPSLI 606

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 607 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 666

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
           MEHLHFRQLPAGIN+IVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 667 MEHLHFRQLPAGINSIVAIACYSGYNQEDSVIMNQSSIDR 706


>gi|78100240|gb|ABB20921.1| RNA polymerase II second largest subunit, partial [Rhodotorula
           hordea]
          Length = 695

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/696 (63%), Positives = 544/696 (78%), Gaps = 28/696 (4%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV+  K  NL  A+K+ TIT+GLKYSL
Sbjct: 1   GAKRLDLAGPLLAALFRMLFRKLTKDVYRHLQKCVETQKPFNLNSAVKSNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  A   +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKAMSAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM YI+VGS + PI+EFLEEWG EN EE S + + + TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGMENLEEFS-SEMSKGTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W G+HRDP  LV+T++RLRR  D++ EV VVRD+R +ELR++TD GR  RPLFIVE
Sbjct: 180 VNGVWQGVHRDPAHLVETIKRLRRCGDISNEVSVVRDVRERELRLFTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQRES---PEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
             RL++ + ++ ALQ  ES   P++    W DL+  G +EY+D EEEET MI MT  DL 
Sbjct: 240 DHRLVLTRANVEALQIEESEDRPDEKRMKWTDLLETGVVEYVDAEEEETVMICMTPEDLD 299

Query: 337 QARLHPEEAYAD-------------------TYTHCEIHPSLILGVCASIIPFPDHNQSP 377
            +RL  E                        T+THCEIHPS+ILG+CASIIPFPDHNQSP
Sbjct: 300 TSRLFQETGQVQVDTFDASATVKGSMGVNTHTWTHCEIHPSMILGICASIIPFPDHNQSP 359

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR+ME+LHFR+LPAG NAIV
Sbjct: 360 RNTYQSAMGKQAMGVFLTNYQVRMDTMANILYYPQKPLATTRSMEYLHFRELPAGQNAIV 419

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AI CYSGYNQEDSVI+NQSSIDRG FRS ++RSY D+EKK G +  E+F +P R  T+ +
Sbjct: 420 AIMCYSGYNQEDSVILNQSSIDRGLFRSFYYRSYMDQEKKSGAIQMEEFEKPTRDTTLRL 479

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
           +HG+Y+KL+ DG+   G RV+GED+IIGKT P+  D E  GQ S+ +T+RD S  ++ +E
Sbjct: 480 KHGTYEKLEADGIIGLGERVAGEDIIIGKTAPLPPDSEELGQRSKNHTKRDVSTPMKSTE 539

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
            G++DQVL+TTN DGL+FVK+RVRS R+P+IGDKF+SRHGQKGT+G+TY  EDMP++ EG
Sbjct: 540 NGIIDQVLVTTNQDGLKFVKIRVRSTRVPEIGDKFASRHGQKGTIGITYRHEDMPFSGEG 599

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
            TPDII+NPHAIPSRMTIG L+EC++ KV+   G EGDATPF++VTV+ IS  L + GY 
Sbjct: 600 TTPDIIINPHAIPSRMTIGHLVECLLSKVSTISGNEGDATPFSEVTVEAISTLLKEMGYH 659

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
            RG E MYNGHTGR+L A ++LGPTYYQRLKHMVDD
Sbjct: 660 SRGLEVMYNGHTGRKLQAQVYLGPTYYQRLKHMVDD 695


>gi|119644141|gb|ABL85608.1| RNA polymerase II second largest subunit [Punctelia rudecta]
          Length = 718

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/718 (62%), Positives = 556/718 (77%), Gaps = 41/718 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+
Sbjct: 1   DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  R
Sbjct: 181 NATKIFVNGVWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCR 240

Query: 276 PLFIVE-------KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEY 317
           PLF+++       +  L++ K  +  L+  RE+     P+     D GW  LV +G +EY
Sbjct: 241 PLFVIDNDPRSSNRGNLVLTKEHVQKLELDRENWATTEPDVREETDMGWQGLVKEGVVEY 300

Query: 318 IDTEEEETTMISMTINDLVQAR----------LHPEE----------AYADTYTHCEIHP 357
           +D EEEET MI MT  DL  +R           +P+E            A T+THCEIHP
Sbjct: 301 VDAEEEETIMIVMTPEDLEISRQLQAGYAMPEANPDELNKRVKAPMNPTAHTWTHCEIHP 360

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKPL T
Sbjct: 361 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLAT 420

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 421 TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 480

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481 IGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEEL 540

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541 GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDAT
Sbjct: 601 QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           PFT+VTVD++S+ L + GYQ RGFE MYNGHTG++L   +FLGPTYYQRL+HMVDDKI
Sbjct: 661 PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVTQVFLGPTYYQRLRHMVDDKI 718


>gi|396941869|gb|AFN89652.1| RNA polymerase II, partial [Lodderomyces elongisporus]
          Length = 784

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/737 (61%), Positives = 554/737 (75%), Gaps = 44/737 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  ET+KA+  GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 48  LLPNITQEEGFETRKAFXLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 107

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGV
Sbjct: 108 LFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 167

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 168 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 227

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FL +WG E   + +PA  P  T++FVNG WVG+H +P  LV  
Sbjct: 228 SLMSCISVGTPSDPILSFLRDWGLEPXXDYTPANSPDVTRVFVNGVWVGVHXEPASLVDY 287

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +
Sbjct: 288 MRDLRRNGDISPEVSLIRDIRXKEFKIFTDAGRVYRPLFIVDDKPDSATKGDLKLQKEHV 347

Query: 293 IALQQR------ESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDL------- 335
             L +       E  ED      W  LV +G +EY+D EEEET MI+MT +DL       
Sbjct: 348 NQLLESSYEGYDEDXEDAAPKYTWSSLVKEGIVEYVDAEEEETIMIAMTPDDLEASKSSL 407

Query: 336 ---VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
               Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPR
Sbjct: 408 TETQQQNLQMEEQELDPAKRIKPTNSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPR 467

Query: 379 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
           NTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVA
Sbjct: 468 NTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVA 527

Query: 439 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
           IACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++
Sbjct: 528 IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLK 587

Query: 499 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSET 556
           HG+Y+KLDDDGL  PG RVSG D+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+
Sbjct: 588 HGTYEKLDDDGLIAPGVRVSGXDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTES 647

Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
           G+VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+
Sbjct: 648 GIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSEGV 707

Query: 617 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
            PD+I+NPHAIPSRMT+  LIEC++ KV+A  G EGDA+PFTDVT + +SK L + GYQ 
Sbjct: 708 VPDLIINPHAIPSRMTVAHLIECLLSKVSALSGLEGDASPFTDVTAEAVSKLLREHGYQS 767

Query: 677 RGFETMYNGHTGRRLTA 693
           RGFE MYNGHTG++L A
Sbjct: 768 RGFEVMYNGHTGKKLMA 784


>gi|94410904|gb|ABF18573.1| RNA polymerase II second largest subunit, partial [Fistulina
           antarctica]
          Length = 690

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/692 (65%), Positives = 543/692 (78%), Gaps = 26/692 (3%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLFRK+T+DV  Y+QKCV+  KD +L  A+K++TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLSNLFRMLFRKVTKDVYRYLQKCVEMRKDFHLNMAVKSQTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQ HN+ WG
Sbjct: 61  LATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQXHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           M+CPAETPEGQACGLVKNLALM  I+VGS + P+++FLEEWG E+  E + +  P  TK+
Sbjct: 121 MVCPAETPEGQACGLVKNLALMACISVGSYSAPVIDFLEEWGLESLXENAHSSTP-CTKV 179

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG W+G+HRDP  L K +R+LRR+ D++ EV VVRD+R KELRI+TD GR  RPLFIV
Sbjct: 180 FVNGVWMGVHRDPANLAKXIRKLRRKDDISPEVSVVRDVREKELRIFTDAGRVCRPLFIV 239

Query: 281 EKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
           E Q+LL++K+ I  L      +DG    W  L+  G IE +D EEEET MISMT  DL  
Sbjct: 240 ENQQLLLQKKHIQWLNA-GVKDDGSTFQWEQLIKDGIIELLDAEEEETVMISMTPEDLET 298

Query: 338 ARLHP-------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           +RL         EE +             T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 299 SRLQSSGIETQDEEDFDPAARLKAGINTHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 358

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 359 TYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 418

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDSVIMNQSSIDRG FRS+F+RSY D EK  G    E F +P R  T+ M+H
Sbjct: 419 LCYSGYNQEDSVIMNQSSIDRGLFRSMFYRSYMDLEKTSGVQQLEQFEKPSRDTTIRMKH 478

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDKLDDDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G
Sbjct: 479 GTYDKLDDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRNHTRRDVSTPLKSTESG 538

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVL+TTNADG +FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 539 IVDQVLVTTNADGHKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIV 598

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GY  R
Sbjct: 599 PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSRFLRQKGYHSR 658

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           G E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 659 GLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690


>gi|45545319|gb|AAS67507.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Coccodinium bartschii]
          Length = 940

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/783 (57%), Positives = 562/783 (71%), Gaps = 43/783 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+G       KKA++ GY++ R+L CALGR   DDRDH G KRLDL+GPL+  LFRM
Sbjct: 158 FLPHIGQTPDAAAKKAFFLGYMVQRMLKCALGRTEPDDRDHLGKKRLDLSGPLMANLFRM 217

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
                T+D   Y+++ ++ G   +++   K   IT+GLKYSLATGNWG Q      +AGV
Sbjct: 218 KLDTATKDFFNYMKRRIEAGAGFSIKAGFKPGIITNGLKYSLATGNWGDQKKLDKAKAGV 277

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVL+R T+ASTLSHLRR N+PIGREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL
Sbjct: 278 SQVLSRYTFASTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNL 337

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG-IHRDPEMLVK 238
           +LM  +T      P++ ++ E   E  EE  P + PQATK+F NG W   I RDP+ LV 
Sbjct: 338 SLMTMVTPSRDTTPLMTYILEKNVEALEEWEPRLNPQATKVFANGVWFAVILRDPKFLVD 397

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRD 291
             R LRR+  +  ++ +V DIR KE +I  D GR  RPLF+V+  +       L + K  
Sbjct: 398 HFRSLRRKGTIEPDISLVWDIREKEFKISGDIGRIIRPLFVVDTDKASPTHGHLKLTKEH 457

Query: 292 IIALQQ----RESPE----------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
           I+ LQ+    +E+P+          D  W  LV +G +E++D EEEE  MI MT   L  
Sbjct: 458 ILRLQESKAYKENPDQAPAGWSMANDYNWFALVNEGVVEFLDAEEEEQAMIIMTPEALSD 517

Query: 338 AR-------LHPEE-----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           AR       + P+E            ++ T+THCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 518 ARARAEGYLIEPDEDPLRRNDVPLAPHSKTFTHCEIHPSMILGVCASIIPFPDHNQSPRN 577

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL  T+AME L FR+LPAG NAIVAI
Sbjct: 578 TYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLARTQAMEFLKFRELPAGQNAIVAI 637

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           +CYSGYNQEDSVIMNQSSIDRG FRSLF+R Y+D+EK +G  V E F +P R +T+ MR 
Sbjct: 638 SCYSGYNQEDSVIMNQSSIDRGLFRSLFYRVYQDQEKLIGQSVLEQFEKPTRGDTLRMRQ 697

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDK+DDDG+  PG RV GED+I+GKT P++ D E  GQ  + + +RD S+ LR +E G
Sbjct: 698 GTYDKIDDDGIVAPGVRVRGEDIIMGKTAPMAPDAEELGQRQKQHVKRDASVPLRSTEAG 757

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQV+LT NAD  +FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ 
Sbjct: 758 VVDQVMLTQNADMQKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGVV 817

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMTI  LIEC++ KVA   G EGDATPFT VTV  +S  L + GYQ R
Sbjct: 818 PDLIINPHAIPSRMTIAHLIECLLSKVATLRGDEGDATPFTKVTVTQVSSLLRRMGYQSR 877

Query: 678 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 737
           GFE MYNGHTGR++ A +FLGPTYYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDGG
Sbjct: 878 GFEVMYNGHTGRKMVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGG 937

Query: 738 LRF 740
           LRF
Sbjct: 938 LRF 940


>gi|119644161|gb|ABL85609.1| RNA polymerase II second largest subunit [Vulpicida pinastri]
          Length = 718

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/718 (62%), Positives = 554/718 (77%), Gaps = 41/718 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+
Sbjct: 1   DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATKIFVNG WVG+HRDP  LV T+  LRRR  ++ EV +VRDIR +E +++TD GR  R
Sbjct: 181 NATKIFVNGVWVGVHRDPAHLVGTVLNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCR 240

Query: 276 PLFIVEKQ-------RLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEY 317
           PLF+++          L++ K  +  L+  RE+     P+     + GW  LV +G +EY
Sbjct: 241 PLFVIDNDPRSSNEGNLVLTKEHVQKLELDRENWATTEPDVREDTNMGWQGLVKEGVVEY 300

Query: 318 IDTEEEETTMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHP 357
           +D EEEET M+ MT  DL     ++A   PE +  D               T+THCEIHP
Sbjct: 301 VDAEEEETIMVVMTPEDLEISRQIRAGFEPEASNPDELSRRVKTPMKQTAHTWTHCEIHP 360

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL T
Sbjct: 361 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLAT 420

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 421 TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 480

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +G  V E F +P RS+T+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481 IGMSVVEQFEKPMRSDTLRLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPIAPDAEEL 540

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541 GQRTKLHVKRDVSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDAT
Sbjct: 601 QKGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVDDKI
Sbjct: 661 PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQRLRHMVDDKI 718


>gi|300394674|gb|ADK11875.1| DNA-directed RNA polymerase II subunit two, partial [Amylocorticium
           cebennense]
          Length = 689

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/687 (65%), Positives = 544/687 (79%), Gaps = 26/687 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLK
Sbjct: 4   DHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNVSLAVKHQTITNGLK 63

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 64  YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 123

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 124 WGMVCPAETPEGQACGLVKNLALMACISVGSISAPVIEFLEEWGLESLEENAHSSTP-CT 182

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 183 KVFVNGVWMGVHRDPGNLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 242

Query: 279 IVEKQRLLIKKRDIIALQQ---RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L+++K+ I  L Q    +  E   W +LV  G IE +D EEEET MI+MT  DL
Sbjct: 243 IVENQQLILQKKHIRWLDQGYTDDVEETFKWDELVKHGIIELLDAEEEETVMIAMTPEDL 302

Query: 336 VQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL          +E +           A T+THCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 303 DNSRLQQGALDLRKLDEEFDPAARLKAGVNAHTWTHCEIHPSMILGICASIIPFPDHNQS 362

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+M +L FR+LPAG NAI
Sbjct: 363 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMMYLKFRELPAGQNAI 422

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E F +P R NT+ 
Sbjct: 423 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEQFEKPTRDNTLR 482

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDK++DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 483 MKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 542

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           ETG+VDQVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 543 ETGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 602

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++SK L + GY
Sbjct: 603 GIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSKFLLQKGY 662

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTY 701
           Q RG E MY+GHTGR+L A I+LGPTY
Sbjct: 663 QSRGMEVMYHGHTGRKLQAQIYLGPTY 689


>gi|119644095|gb|ABL85606.1| RNA polymerase II second largest subunit [Parmotrema reticulatum]
          Length = 718

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/719 (62%), Positives = 554/719 (77%), Gaps = 43/719 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+
Sbjct: 1   DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  R
Sbjct: 181 NATKIFVNGVWVGVHRDPAHLVGTVQTLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCR 240

Query: 276 PLFIVEK-----------------QRLLIKKRDIIALQQRESPEDG--GWHDLVAKGFIE 316
           PLF+++                  Q+L + +R I  +Q   S E+   GW  LV +G +E
Sbjct: 241 PLFVIDNDPRSSNRGNLVLTKEHVQKLELDER-IGLIQNLTSGEETNMGWQGLVKEGVVE 299

Query: 317 YIDTEEEETTMISMTINDLVQAR----------LHPEE----------AYADTYTHCEIH 356
           Y+D EEEET MI MT  DL  +R           +P+E            A T+THCEIH
Sbjct: 300 YVDAEEEETIMIVMTPEDLEISRQLQAGYAMPEANPDELNKRVKAPMNPTAHTWTHCEIH 359

Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
           PS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKPL 
Sbjct: 360 PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLA 419

Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
           TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK
Sbjct: 420 TTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEK 479

Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EA 535
           ++G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E 
Sbjct: 480 RIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEE 539

Query: 536 QGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 594
            GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRH
Sbjct: 540 LGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRH 599

Query: 595 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 654
           GQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDA
Sbjct: 600 GQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDA 659

Query: 655 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           TPFT+VTVD++S+ L + GYQ RGFE MYNGHTG++L   +FLGPTYYQRL+HMVDDKI
Sbjct: 660 TPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVTQVFLGPTYYQRLRHMVDDKI 718


>gi|120561263|gb|ABM27016.1| RNA polymerase II second largest subunit, partial [Catenaria
           anguillulae]
          Length = 892

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/748 (60%), Positives = 558/748 (74%), Gaps = 43/748 (5%)

Query: 2   LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
           LPH+GT   CET+KA++ GY++HR+LL ALGRR  DDRDH+G KRLDLAGPLL  LF+  
Sbjct: 146 LPHIGTTPGCETRKAWFIGYMVHRMLLAALGRRPIDDRDHFGKKRLDLAGPLLASLFKTF 205

Query: 62  FRKLTRDVRAYVQKCVDNGK-DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           F K  +D+     K ++  +   +L   +K   IT+GL+Y+LATGNWG Q     TRAGV
Sbjct: 206 FSKFVKDITREFTKSIERSQGPFHLASVVKPGIITNGLRYALATGNWGDQKKFMETRAGV 265

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 266 SQVLNRYTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 325

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPA-VIPQATKIFVNGCWVGIHRDPEMLVK 238
           ALM YI+VG++A P++E L+E+G EN EEIS A  +  ATK+FVNG WVGIH DP  L K
Sbjct: 326 ALMAYISVGTSAEPVVEALQEYGIENLEEISDASAVADATKVFVNGAWVGIHSDPADLFK 385

Query: 239 TLRRLRRRVDVNT------EVGVVRDIRLKELRIYTDYGRCSRPLFIV--EKQRLLIKKR 290
           TLR +RR  D+        EV +VRDIR  E+RIYTD GR  RPLF+V  + QRL ++K 
Sbjct: 386 TLREMRRMGDLTPPHLDEPEVSIVRDIRDNEIRIYTDPGRIMRPLFVVNEDTQRLKLRKA 445

Query: 291 DIIALQQRESPEDG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
            + A  +    +D              W +L+ +G +E +DTEEEE  MISMT  DL ++
Sbjct: 446 HVAAALEALKVDDDVKETDEMRDSLMSWRNLLRQGVLELMDTEEEEMAMISMTPADLAES 505

Query: 339 R------------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           R                    P E Y   +THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 506 RGDKVVDKSKFDKTARLKSRKPGE-YCKRWTHCEIHPSMILGICASIIPFPDHNQSPRNT 564

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TN+Q RMDTLA +LYYPQ+PLVTTR+M +L FR+LPAG NAIVAI 
Sbjct: 565 YQSAMGKQAMGVFLTNFQLRMDTLANILYYPQRPLVTTRSMTYLRFRELPAGQNAIVAIT 624

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G + +E F +P+R  TM +R G
Sbjct: 625 CYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYFDSEKKSGGVEEEVFEKPNRDTTMRLRRG 684

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRYTRRDHSISLRHSETGMV 559
           +YD LDDDG+  PGT+V G+D+I+GKT P+  D ++ G  +  T++D S SL+ +E G V
Sbjct: 685 TYDLLDDDGIISPGTQVKGDDIILGKTAPLPDDVSEMGARTTQTKKDVSTSLKATEKGYV 744

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           D V++TTNAD L+FVKVRVRS R+PQ+GDKF+SRHGQKGTVG+TY QEDMP++  G+TPD
Sbjct: 745 DHVIVTTNADNLKFVKVRVRSTRVPQMGDKFASRHGQKGTVGVTYRQEDMPFSALGVTPD 804

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +IVNPHAIPSRMTIG L+EC++ KV A +G EGDATPFTD+TV  IS+ L + G+Q RGF
Sbjct: 805 LIVNPHAIPSRMTIGHLVECLLSKVGALVGTEGDATPFTDLTVQEISQQLAQHGFQQRGF 864

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           E MYNGHTGR+L A +F GPTYYQRLKH
Sbjct: 865 EVMYNGHTGRKLDAQVFFGPTYYQRLKH 892


>gi|110669604|gb|ABG81897.1| RNA polymerase II second largest subunit [Bacidia schweinitzii]
          Length = 720

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/722 (62%), Positives = 549/722 (76%), Gaps = 47/722 (6%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DD DH+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV++ K+ NL  A+K+ T+T+
Sbjct: 1   DDSDHFGKKRLDLAGPLLAGLFRMLFYKLTKDVFKYLQKCVESNKEFNLTLAVKSTTLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  A  ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLNNP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG WVG+H  P  LV T++ LRR+  ++ EV +VRDIR +E +I+TD GR  R
Sbjct: 181 NATKVFVNGVWVGVHSQPANLVNTIKSLRRQGLISYEVSLVRDIRDREFKIFTDAGRVCR 240

Query: 276 PLFIVEKQ-------RLLIKKRDIIALQQRESPEDG-----------GWHDLVAKGFIEY 317
           PLF+V+          L++ K  I  L   E    G           GW  LV  G +EY
Sbjct: 241 PLFVVDNDPKSNNYGNLVLTKDHIQKLVDDEEAGAGMDAQEREEKLIGWQGLVKNGVVEY 300

Query: 318 IDTEEEETTMISMTINDL------------------------VQARLHPEEAYADTYTHC 353
           +D EEEET MI MT  DL                        V+A+ +P + +A  +THC
Sbjct: 301 VDAEEEETIMIVMTPEDLETSRQLHAGYTLPPPDLIEDPNARVKAQTNPTQQHA--WTHC 358

Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
           EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQK
Sbjct: 359 EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQK 418

Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
           PL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D
Sbjct: 419 PLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTD 478

Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 533
           +EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG R+SGED+IIGKT PI+ D
Sbjct: 479 QEKRVGMNVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRMSGEDIIIGKTAPIAPD 538

Query: 534 -EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
            E  GQ ++ + +RD S  LR +E G+VDQVLL+TN++GLRFVKVR+R+ ++PQIGDKF+
Sbjct: 539 AEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNSEGLRFVKVRMRTTKVPQIGDKFA 598

Query: 592 SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
           SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV+A  G E
Sbjct: 599 SRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSALQGCE 658

Query: 652 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
           GDATPFT+VTVD++SK L   GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDD
Sbjct: 659 GDATPFTEVTVDSVSKLLRVHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDD 718

Query: 712 KI 713
           KI
Sbjct: 719 KI 720


>gi|55140711|gb|AAQ01544.3| RNA polymerase II second largest subunit [Phaeomarasmius proximans]
          Length = 687

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 542/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VG+ + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGTISAPVIEFLEEWGLESLEENAHSTTP-FTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRD   LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q
Sbjct: 181 GVWIGVHRDAANLVKTLKKLRRKDDLSPEVSVVRDIREKELRVYTDAGRVCRPLFIVENQ 240

Query: 284 RLLIKKRDIIALQQRESPE--DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +L+++K+ I  L    + E  +  W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLMLQKKHIRWLNNGVNDEGSEFKWEHLIRGGTIELLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 PEE-------------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 QRGIDVPVNDGEYDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ ++HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRENTLRLKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VD
Sbjct: 481 DKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVLLTTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+
Sbjct: 541 QVLLTTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDL 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|396941795|gb|AFN89615.1| RNA polymerase II, partial [Ogataea angusta]
          Length = 786

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/737 (60%), Positives = 556/737 (75%), Gaps = 44/737 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAY+ GYI++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHISQDSGYETNKAYFLGYIVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+C++ G D N+  A+K+ TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLSRDIYRYMQRCIERGDDFNIVSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM   +VGSA+ PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV+T
Sbjct: 230 SLMACASVGSASEPITYLLEEWGLEPLSDYEPQEHKNATRVFLNGNWVGTHRDPAMLVET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
           +R+LRR   ++ EV ++RDIR +E +I+TD GR  RPLFIV+       K  L + K   
Sbjct: 290 MRQLRRSGTISPEVSLIRDIREREFKIFTDAGRIYRPLFIVDNDPDSEHKGELKLTKEHC 349

Query: 290 -----RDIIALQQRESPEDGG-----------WHDLVAKGFIEYIDTEEEETTMISMTIN 333
                R++  + Q E  +D G           W  L++ G IEY+D EEEET +I+M+  
Sbjct: 350 RKILDREVEEIVQDEEFDDEGQPLGPVQRVFGWDSLLSNGIIEYLDAEEEETVLIAMSPE 409

Query: 334 DLVQAR----------LHPEE-----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
           DL+ +           L P +       A ++THCEIHPS+ILGV ASIIPFPDHNQSPR
Sbjct: 410 DLISSASAEVQKAERDLDPAKRIKNVVKAHSFTHCEIHPSMILGVAASIIPFPDHNQSPR 469

Query: 379 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
           NTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL  T++ME+L FR+LPAG NAIVA
Sbjct: 470 NTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLAKTQSMEYLKFRELPAGQNAIVA 529

Query: 439 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
           IACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RS+T+G +
Sbjct: 530 IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRSGISVVEEFEKPMRSSTLGFK 589

Query: 499 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSET 556
            G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+
Sbjct: 590 QGTYEKLDDDGLIAPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTES 649

Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
           G+VDQVLLTTNA+GL+F KVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI
Sbjct: 650 GIVDQVLLTTNAEGLKFAKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGI 709

Query: 617 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
            PD+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ 
Sbjct: 710 VPDLIINPHAIPSRMTVAHLIECLLSKVASMRGYEGDATPFTDLTVDAVSKLLRENGYQS 769

Query: 677 RGFETMYNGHTGRRLTA 693
           RGFE MYNGHTG++L A
Sbjct: 770 RGFEVMYNGHTGKKLMA 786


>gi|396941845|gb|AFN89640.1| RNA polymerase II, partial [Saturnispora dispora]
          Length = 764

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/728 (61%), Positives = 558/728 (76%), Gaps = 35/728 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAY+ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 37  FLPHISQDSGHETNKAYFLGYVINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRI 96

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGV
Sbjct: 97  LFRKLSRDIFRYMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGV 156

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 157 SQVLNRYTYASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 216

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PI   LEEWG E   +  P     + ++F+NG WVG HRDP +LV T
Sbjct: 217 SLMSCISVGTQSEPITYLLEEWGLEPMSDYDPIKHKDSIRVFLNGNWVGTHRDPSLLVDT 276

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
           +R+LRR   +++EV +VRDIR KE +I+TD GR  RPLFIV+       K  L + K   
Sbjct: 277 MRQLRRNGTISSEVSLVRDIREKEFKIFTDAGRVYRPLFIVDDDEDSETKGGLKLTKEHC 336

Query: 290 -----RDIIALQQRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQ 337
                R++  L+  +  E+      GW  LV+ G +EY+D EEEET +I+M+ +DL  VQ
Sbjct: 337 RKILDRELEVLEADDEDEEQQTREFGWESLVSNGVVEYLDAEEEETVLIAMSFDDLQPVQ 396

Query: 338 ARLHPEEA----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
              H +             A+++THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 397 ENAHDDHIDPAQRIKNHINANSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGK 456

Query: 388 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 447
           QAMG+Y+TNY  RMDT+A +LYYPQKPL  T++ME L FR+LPAG NAIVAI+CYSGYNQ
Sbjct: 457 QAMGVYLTNYNVRMDTMANILYYPQKPLGKTQSMEFLKFRELPAGQNAIVAISCYSGYNQ 516

Query: 448 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 507
           EDS+IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P R++T+G + G+Y+KLDD
Sbjct: 517 EDSMIMNQSSIDRGLFRSLFFRSYMDQERRNGISVVEEFEKPMRASTLGFKAGTYEKLDD 576

Query: 508 DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLT 565
           DGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLT
Sbjct: 577 DGLISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTENGIVDQVLLT 636

Query: 566 TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 625
           TNA+GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+TVEG+ PD+I+NPH
Sbjct: 637 TNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTVEGVVPDLIINPH 696

Query: 626 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 685
           AIPSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ RGFE +YNG
Sbjct: 697 AIPSRMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVLYNG 756

Query: 686 HTGRRLTA 693
           HTG+++ A
Sbjct: 757 HTGKKMMA 764


>gi|354992107|gb|AER45760.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/687 (65%), Positives = 540/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GL+YSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLEYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+ GS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISDGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   +  E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDEGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLGASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|300394684|gb|ADK11880.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           arida]
          Length = 687

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/688 (65%), Positives = 542/688 (78%), Gaps = 27/688 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST-VCT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 334
           IVE Q+LL++K+ I  L Q     +  E+  W  LV  G IE +D EEEET MISMT  D
Sbjct: 240 IVENQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMISMTPED 299

Query: 335 LVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 300 LENSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420 IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ 
Sbjct: 480 RMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540 TENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + G
Sbjct: 600 EGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKG 659

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGPTY 701
           YQ RG E MY+GHTGR+L A ++LGPTY
Sbjct: 660 YQSRGLEVMYHGHTGRKLQAQVYLGPTY 687


>gi|354992119|gb|AER45766.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/687 (64%), Positives = 541/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQEKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MIS+T  DL  +RL 
Sbjct: 241 QLLLRKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISVTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+++GKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIVVGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDK +SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKSASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|300394750|gb|ADK11913.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
           himantioides]
          Length = 685

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/686 (65%), Positives = 540/686 (78%), Gaps = 26/686 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+  KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFVKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240 IVENQQLALQKKHIKWLNQGYRDDDGEEYKWEHLVKGGIIELLDAEEEETVMISMTPEDL 299

Query: 336 VQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
             ++L       H  +   D            T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300 ENSKLQSAGIDPHTNDGDYDPAARLKAGNNSHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLR 479

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDKL+DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480 MKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN++G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540 ENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GI PDI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600 GIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPT 700
           Q RG E MY+GHTGR+L A ++LGPT
Sbjct: 660 QSRGLEVMYHGHTGRKLQAQVYLGPT 685


>gi|396941807|gb|AFN89621.1| RNA polymerase II, partial [Kuraishia capsulata]
          Length = 780

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/732 (60%), Positives = 558/732 (76%), Gaps = 40/732 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      E +KA++ GYI++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHITQEPGYENRKAFFLGYIVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KL+RD+  Y+QKC++  K+ NL  A+K+ TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFKKLSRDIYRYMQKCIETNKEFNLALAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + P+   LEEWG E  EE        AT++F+NG WVG HR+P +LV T
Sbjct: 230 SLMTCISVGTPSDPLHYLLEEWGMEPLEEYDSQEHANATRVFLNGVWVGTHREPALLVNT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK----------------- 282
           +R+LRRR D++ EV ++RDIR +E +I+TD GR  RPLF+V+                  
Sbjct: 290 MRQLRRRGDISPEVSIIRDIREREFKIFTDAGRVYRPLFVVDDDPESEHKGELKLTKEHC 349

Query: 283 QRLLIKKRDIIAL----QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV-- 336
           ++++  + D  A+    ++ E P+  GW  LV  G +EY+D EEEET +I+M+  DL   
Sbjct: 350 RKIINSEEDDTAVYDDEEEDEGPKTFGWTSLVNHGVVEYVDAEEEETILIAMSPEDLAPV 409

Query: 337 ------QARLHPEEAY-------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
                 QA L P +         + ++THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQS
Sbjct: 410 TTDVVQQAELDPAKRIKSAVNLASHSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS 469

Query: 384 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
           AMGKQAMG+++TNY  RMDT+A +LYYPQKPL  T+AME+L FR+LPAG NA+VAIACYS
Sbjct: 470 AMGKQAMGVFLTNYNVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAVVAIACYS 529

Query: 444 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
           GYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++  ++V E+F +P+RSNT+ ++HG+Y+
Sbjct: 530 GYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRSMSVV-EEFEKPNRSNTLRLKHGTYE 588

Query: 504 KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQ 561
           KLD+DGL  PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQ
Sbjct: 589 KLDEDGLISPGVRVSGEDIIIGKTVPIPADTEELGQRTKYHTKRDASTPLRSTENGIVDQ 648

Query: 562 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
           VLLTTN +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  ED+P+T EGI PD+I
Sbjct: 649 VLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDVPFTAEGIVPDLI 708

Query: 622 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
           +NPHAIPSRMT+  LIEC++ KV +  G EGDATPFTD+TVD +S+ L + GYQ RGFE 
Sbjct: 709 INPHAIPSRMTVAHLIECLLSKVGSLRGYEGDATPFTDLTVDAVSRLLRENGYQSRGFEV 768

Query: 682 MYNGHTGRRLTA 693
           MYNGHTG++L A
Sbjct: 769 MYNGHTGKKLMA 780


>gi|56694286|gb|AAW22883.1| RNA polymerase II second largest subunit [Botrychium virginianum]
          Length = 488

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/489 (89%), Positives = 463/489 (94%), Gaps = 1/489 (0%)

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
           QATKIFVNGCWVGIHRDPE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSR
Sbjct: 1   QATKIFVNGCWVGIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSR 60

Query: 276 PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           PLFIVE QRLLIKK DI ALQQ+ES E  GW+DLVAKGFIEY+DTEEEETTMISMTI+DL
Sbjct: 61  PLFIVENQRLLIKKSDIRALQQKESTE-SGWYDLVAKGFIEYVDTEEEETTMISMTISDL 119

Query: 336 VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
           V AR HPEEAY+DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 120 VNARNHPEEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 179

Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
           NYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQ
Sbjct: 180 NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQ 239

Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
           SSIDRGFFRS+F+RSYRDEEKK GTLVKE+F RP+R  T GMRHGSYDKLDDDGLAPPGT
Sbjct: 240 SSIDRGFFRSIFYRSYRDEEKKQGTLVKEEFERPNRETTTGMRHGSYDKLDDDGLAPPGT 299

Query: 516 RVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
           RVSGEDVIIGKTTP+ QD++  QA R+T+RD    LRHSE+GMVDQVLLTTNADGLRFVK
Sbjct: 300 RVSGEDVIIGKTTPVPQDDSGTQAQRFTKRDQXTCLRHSESGMVDQVLLTTNADGLRFVK 359

Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
           VR+R +R+PQIGDKFS RHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQ
Sbjct: 360 VRMRXIRVPQIGDKFSXRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQ 419

Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
           LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFETMYNGHTGRRL AMI
Sbjct: 420 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFETMYNGHTGRRLNAMI 479

Query: 696 FLGPTYYQR 704
           FLGPTYYQR
Sbjct: 480 FLGPTYYQR 488


>gi|52699866|gb|AAU86994.1| DNA-dependent RNA polymerase II second largest subunit [Rhizocarpon
           disporum]
          Length = 716

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/714 (62%), Positives = 548/714 (76%), Gaps = 40/714 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH G KRLDLAGPLL GLFR LF+KLT+DV  Y+QKCV+  ++ NL   +K+ T+TSGLK
Sbjct: 1   DHXGKKRLDLAGPLLAGLFRTLFKKLTKDVFKYLQKCVEQNREFNLTLGVKSTTLTSGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACG+VKNLALM YITVG+ + PI++F+ +   +  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGVVKNLALMCYITVGTPSEPIIDFMVQRSMDLLEEYEPQSYPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KIFVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDT 320
           +++       +  L++ K+ I  L++         PE+      GW  LV +G +EY+D 
Sbjct: 241 VIDNDPRSPNRGSLVLTKQHIQKLEEDHEIGADMDPEERESKFMGWEGLVNQGVVEYVDA 300

Query: 321 EEEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLIL 361
           EEEET MI MT  DL  +R                     P    A T+THCEIHPS+IL
Sbjct: 301 EEEETVMIVMTPADLEISRQLQQGYTLPETSDDPNRRVKAPMNPTAHTWTHCEIHPSMIL 360

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           G+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+M
Sbjct: 361 GICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSM 420

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSS+DRG FRSLF+R+Y D+EK++GT 
Sbjct: 421 EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSVDRGLFRSLFYRAYTDQEKRVGTS 480

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 540
           V E F +P RS+T+ ++HG+YDKLDDDG+  PG R+SGED+IIGKT PI+ D E  GQ +
Sbjct: 481 VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDIIIGKTAPIAPDAEELGQRT 540

Query: 541 R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           + + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT
Sbjct: 541 KLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGT 600

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           +G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTD
Sbjct: 601 IGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTD 660

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           VTVD++S  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV  KI
Sbjct: 661 VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVXXKI 714


>gi|88976144|gb|ABD59037.1| RNA polymerase II second largest subunit, partial [Inocybe cookei]
          Length = 688

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/689 (64%), Positives = 543/689 (78%), Gaps = 25/689 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSFSGPVIEFLEEWGLESLEENAHSSTA-FTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRD   LVKTL+RLRRR D++TE+  VRDIR +E+R+YTD GR  RPLFIVE
Sbjct: 180 VNGVWIGVHRDAANLVKTLKRLRRRDDISTEISXVRDIREREMRVYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+L+++K+ +  L     +  ++  W  ++  G IE +D+EEEET MISMT  DL  +R
Sbjct: 240 DQQLVLQKKHVRWLNSGVDDEGQEFKWEQMIKGGIIELLDSEEEETVMISMTPEDLENSR 299

Query: 340 L-------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           L       H  +             +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 300 LQQRGIDPHANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 359

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 360 YQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 419

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG
Sbjct: 420 CYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHG 479

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKL+DDG   PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G 
Sbjct: 480 TYDKLEDDGFIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGS 539

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTN++G +FVKVRVRS+RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 540 VDQVLITTNSEGQKFVKVRVRSIRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVP 599

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 600 DLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQRGYQSRG 659

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 660 LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 688


>gi|396941907|gb|AFN89671.1| RNA polymerase II, partial [Citeromyces matritensis]
          Length = 784

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/736 (60%), Positives = 555/736 (75%), Gaps = 43/736 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  ET+KA++ GY+++RLLLCAL R+ EDDRDH+G KRLDLAGPL+ GLFR+
Sbjct: 49  FLPHISQEEGFETRKAFFLGYMVNRLLLCALERKEEDDRDHFGRKRLDLAGPLMAGLFRV 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+  KD N   A+K   IT+GL+YSLATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLTKDIYRYMQRCVETNKDFNXNLAVKPSIITNGLRYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS +  IL++L+EWG E  EE  P+    +TKIFVNG WVG HR P  LV+ 
Sbjct: 229 SLMSCISVGSPSDMILDYLDEWGMEPLEEYVPSDAEHSTKIFVNGVWVGTHRIPADLVRN 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRRR D++ EV ++R+IR KE +++TD GR   PLFIV+       K  L + K  I
Sbjct: 289 IKDLRRRGDISPEVSIIRNIREKEFKLFTDAGRVYXPLFIVDDDPESENKGELKLNKSHI 348

Query: 293 IALQ--QRESPEDG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
             LQ  Q E+ E G            GW  LV  G +EY+D EEEET M +M   DL   
Sbjct: 349 ERLQAXQDETGEYGMDVDEEEEDGXYGWSSLVKNGVVEYVDAEEEETIMXAMAPEDLTSG 408

Query: 339 RLHPEE-------------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           R+  +E                       T+THCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 409 RVGVDEQRNVDMDRDPGLRIKPAINPSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRN 468

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+Y TNY  RMDT++ +LYYPQKPL  T+AME+L FR+LPAG NAIVAI
Sbjct: 469 TYQSAMGKQAMGVYSTNYNVRMDTMSNILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAI 528

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           ACYSGYNQEDS+IMNQSSIDRG FRSLF+RSY D+E+++G  V E+F +P RSNT+ ++H
Sbjct: 529 ACYSGYNQEDSMIMNQSSIDRGLFRSLFYRSYTDQERRVGMSVVEEFEKPLRSNTLRLKH 588

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
           G+Y+KLD+DGL  PG RVSGED+IIGKTTPI  D E  GQ +++ T+RD S  LR +E+G
Sbjct: 589 GTYEKLDEDGLVAPGVRVSGEDIIIGKTTPIQPDTEELGQRTKFHTKRDASTPLRSTESG 648

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVLLTTN DG++FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EG+ 
Sbjct: 649 IVDQVLLTTNHDGVKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGVV 708

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDATPFTD+TVD +SK L + GYQ R
Sbjct: 709 PDLIINPHAIPSRMTVAHLIECLLSKVSSMRGYEGDATPFTDLTVDAVSKLLRENGYQSR 768

Query: 678 GFETMYNGHTGRRLTA 693
           GFE MYNGHTG++L A
Sbjct: 769 GFEVMYNGHTGKKLMA 784


>gi|52699778|gb|AAU86951.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           laqueata]
          Length = 711

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/711 (63%), Positives = 545/711 (76%), Gaps = 38/711 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLK
Sbjct: 1   DXXGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR  +ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYAFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGTPSQPIIDFMIQRNMEVLEEYEPQRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T+  LRR+  ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPAHLVSTVLALRRQDAISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVEKQ-------RLLIKKRDIIALQQ-RESPED--------GGWHDLVAKGFIEYIDTEE 322
           +++          L++ K DI  L+  ++ P D         GW+ LV +G +EY+D EE
Sbjct: 241 VIDNDPRSPNCGNLVLTKSDIQKLEDDKDLPPDYEIDEKNPPGWNGLVKRGVVEYVDAEE 300

Query: 323 EETTMISMTINDL-----VQARLH--------------PEEAYADTYTHCEIHPSLILGV 363
           EET MI MT  DL     +QA  H              P    A T+THCEIHPS+ILG+
Sbjct: 301 EETVMIVMTPEDLEISRQLQAGYHLPETSDDLNKRVKAPMNPTAHTWTHCEIHPSMILGI 360

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSPRNTYQSAMG QAMG+ + NY  RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 361 CASIIPFPDHNQSPRNTYQSAMGXQAMGVXLXNYDQRMDTMANILYYPQKPLATTRSMEF 420

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 421 LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 480

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 541
           E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 481 EQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKL 540

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 541 HVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 600

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601 ITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           VD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 661 VDSVSKLLREHGYQSRGFEAMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 711


>gi|52699770|gb|AAU86947.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           canadensis]
          Length = 713

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/711 (63%), Positives = 545/711 (76%), Gaps = 38/711 (5%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G  RLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSL
Sbjct: 3   GKXRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSL 62

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 63  ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 122

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+F
Sbjct: 123 VCPAETPEGQACGLVKNLALMCYITVGTPSQPIVDFMIQRNMEVLEEYEPQRSPNATKVF 182

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG WVG+HRDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF++ 
Sbjct: 183 VNGVWVGVHRDPAHLVSTVLALRRANAISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIN 242

Query: 282 KQ-------RLLIKKRDIIALQQ-RESPED--------GGWHDLVAKGFIEYIDTEEEET 325
                     L++ K DI  L+  ++ PED         GW+ L+ KG +EY+D EEEET
Sbjct: 243 NDPRSTNCGNLVLTKPDIHKLEDDKDLPEDYEIDEKNPPGWNGLIKKGIVEYVDAEEEET 302

Query: 326 TMISMTINDL-----VQARLH--------------PEEAYADTYTHCEIHPSLILGVCAS 366
            MI MT  DL     +QA  H              P    A T+THCEIHPS+ILG+CAS
Sbjct: 303 VMIVMTPEDLEISRQLQAGYHLPDTSDDLIKRVKAPMNPTAHTWTHCEIHPSMILGICAS 362

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMG QAMG+ +TNY  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 363 IIPFPDHNQSPRNTYQSAMGXQAMGVXLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 422

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F
Sbjct: 423 RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 482

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 544
            +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +
Sbjct: 483 EKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVK 542

Query: 545 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
           RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 543 RDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 602

Query: 605 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+
Sbjct: 603 RQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDS 662

Query: 665 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           +SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 663 VSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 713


>gi|396941799|gb|AFN89617.1| RNA polymerase II, partial [Ogataea glucozyma]
          Length = 774

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/737 (60%), Positives = 559/737 (75%), Gaps = 45/737 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAY+ GYII+RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 39  FLPHISQDTGFETNKAYFLGYIINRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 98

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+C++ G+D N+  A+K+ TI SGLKYSLATG WG Q  A  +RAGV
Sbjct: 99  LFRKLSRDIYRYMQRCIERGEDFNIVSAVKSTTIXSGLKYSLATGXWGEQKKAMSSRAGV 158

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 159 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 218

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  ++VGSA+ PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV T
Sbjct: 219 SLMACVSVGSASEPITYLLEEWGLEPLSDYEPQEHKNATRVFLNGNWVGTHRDPAMLVDT 278

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK----------------- 282
           +R+LRR   ++ EV ++RDIR +E +I+TD GR  RPLFIV+                  
Sbjct: 279 MRQLRRSGTISPEVSLIRDIREREFKIFTDAGRIYRPLFIVDDDPDSEHKGELKLTKEHC 338

Query: 283 QRLLIKKRDIIALQQRESPEDG----------GWHDLVAKGFIEYIDTEEEETTMISMTI 332
           +++L ++ + IA Q  E  E+G          GW  L++ G IEY+D EEEET +I+M+ 
Sbjct: 339 RKILDREVEEIA-QDEEFDEEGEPLEPIQRVYGWDSLLSGGIIEYLDAEEEETVLIAMSP 397

Query: 333 NDLV---------QARLHPEEAYAD-----TYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
            DL+         QA L P +   +     ++THCE+HPS+ILGV ASIIPFPDHNQSPR
Sbjct: 398 EDLIPVTEQDAQKQAELDPAKRIKNVIKTHSFTHCEVHPSMILGVAASIIPFPDHNQSPR 457

Query: 379 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
           NTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL  T+AME+L FR+LPAG NAIVA
Sbjct: 458 NTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVA 517

Query: 439 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
           I+CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  + E+F +P R++T+G +
Sbjct: 518 ISCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRNGISIVEEFEKPMRASTLGFK 577

Query: 499 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSET 556
            G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+
Sbjct: 578 TGTYEKLDDDGLISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTES 637

Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
           G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI
Sbjct: 638 GIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGI 697

Query: 617 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
            PD+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ 
Sbjct: 698 VPDLIINPHAIPSRMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSKLLRENGYQS 757

Query: 677 RGFETMYNGHTGRRLTA 693
           RGFE MYNGHTG++L A
Sbjct: 758 RGFEVMYNGHTGKKLMA 774


>gi|396941797|gb|AFN89616.1| RNA polymerase II, partial [Ogataea methanolica]
          Length = 784

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/736 (60%), Positives = 557/736 (75%), Gaps = 43/736 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAYY GYII+RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  FLPHISQDTGFETNKAYYLGYIINRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLSRDIYRYMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  ++VG+++ PI   LEEWG E   E  P     AT++F+NG WVG HRDP MLV+T
Sbjct: 229 SLMTCVSVGTSSEPITYLLEEWGLEPLSEYEPQEHKNATRVFLNGNWVGTHRDPGMLVET 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
           +++LRR   ++ EV ++RDIR +E +I+TD GR  RPLFIV+       K  L + K   
Sbjct: 289 MKQLRRSGTISPEVSLIRDIREREFKIFTDAGRIYRPLFIVDDDQDSEHKGELKLNKEHC 348

Query: 290 RDIIALQQRESP------EDG----------GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
           R I+  +  E P      EDG          GW  L++ G IE++D EEEET +I+M+  
Sbjct: 349 RKILEREVEEIPQDEEYDEDGEPLEPIQRVFGWESLLSSGVIEFLDAEEEETVLIAMSPE 408

Query: 334 DLV---------QARLHP-----EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           DL+         Q  ++P         A  +THCE+HPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 409 DLIPVVEQDKQKQVEMNPGARIKSVTKAHAFTHCEVHPSMILGVAASIIPFPDHNQSPRN 468

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL  T+AME+L FR+LPAG NAIVAI
Sbjct: 469 TYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAI 528

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RS+T+G + 
Sbjct: 529 CCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRNGISVVEEFEKPLRSSTLGFKA 588

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
           G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 589 GTYEKLDDDGLISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTESG 648

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVLLTTNA+GL+FVKVR+R+ + PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI 
Sbjct: 649 IVDQVLLTTNAEGLKFVKVRMRTTKTPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIV 708

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ R
Sbjct: 709 PDLIINPHAIPSRMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSKLLRENGYQSR 768

Query: 678 GFETMYNGHTGRRLTA 693
           GFE MY+GHTG++L A
Sbjct: 769 GFEVMYHGHTGKKLMA 784


>gi|113957144|gb|ABI49101.1| RNA polymerase II second largest subunit [Pseudocyphellaria
           anomala]
          Length = 715

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/715 (62%), Positives = 552/715 (77%), Gaps = 43/715 (6%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+  ++ NL   +K+ T+T+GLKYS
Sbjct: 1   FGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVEGNREFNLTLGVKSTTLTNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           ++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+
Sbjct: 121 LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATKV 180

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181 FVNGVWVGVHRDPAHLVSTVQTLRRRHWISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 281 E-------KQRLLIKKRDIIALQQRES--PE---DG--------GWHDLVAKGFIEYIDT 320
           +       +  L++ K  +  L+  +   PE   +G        GW  LV +G +EY+D 
Sbjct: 241 DNDPKSPNRGNLVLTKEHVNKLEDDKELGPELDAEGREKEDKFRGWKGLVNQGVVEYVDA 300

Query: 321 EEEETTMISMTINDLVQAR------LHPEEAYAD--------------TYTHCEIHPSLI 360
           EEEET MI MT  DL  +R      + PE +  D              T+THCEIHPS+I
Sbjct: 301 EEEETVMIVMTPEDLEISRQIQAGYVMPEPSIDDPNKRVKAPLNPTAHTWTHCEIHPSMI 360

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 361 LGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRS 420

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G 
Sbjct: 421 MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGM 480

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 539
            V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 481 SVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 540

Query: 540 SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
           ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 541 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 600

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           T+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 601 TIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 660

Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           +VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 EVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 715


>gi|52699806|gb|AAU86965.1| DNA-dependent RNA polymerase II second largest subunit [Coenogonium
           luteum]
          Length = 714

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/712 (62%), Positives = 552/712 (77%), Gaps = 40/712 (5%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPL+ GLFR LF KLT+DV  Y+QKCV+ GK+ NL   +K+ TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLMAGLFRQLFSKLTKDVSKYLQKCVEGGKEFNLTLGVKSTTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  AA ++AGV+QVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGEQKKAASSKAGVAQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           ++CPAETPEGQACGLVKNLALM YITVGS + PI+EF+ +   +  EE  P   P ATK+
Sbjct: 121 LVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQRQMDVLEEYEPTRSPHATKV 180

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG WVG+HRD   LV T++ LRRR  +++EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181 FVNGVWVGVHRDSGHLVSTVQSLRRRNMISSEVTLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 281 E-------KQRLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDTEE 322
           +       K  L++ K  +  L+  RE P D           GW+ L+  G +E++D EE
Sbjct: 241 DNDPKSSNKGSLVMTKEMVNKLEDDREIPADLDPEEKKKRHFGWNGLLVNGAVEFLDAEE 300

Query: 323 EETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGV 363
           EET MI+M+  DL     VQA   P E  AD              T+THCEIHPS+ILGV
Sbjct: 301 EETVMIAMSPEDLEISRMVQAGYAPPEPSADPNARVKAPVKAIQQTWTHCEIHPSMILGV 360

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME+
Sbjct: 361 CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEY 420

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY ++EK +G  V 
Sbjct: 421 LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYVEQEKHLGMEVV 480

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASR- 541
           E F +P RS T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT P+ S DE  GQ ++ 
Sbjct: 481 EQFEKPLRSETLRLKHGTYDKLDDDGIIAPGIRVSGEDIIIGKTAPMRSNDEELGQRTKL 540

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           +T+RD S +LR +E+G+VD+VL+TTNA+GL+FVKVR R+ ++PQIGDKF+SRHGQKGT+G
Sbjct: 541 HTKRDASTALRSTESGLVDKVLITTNAEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIG 600

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP++ +GI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601 ITYRQEDMPFSAQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           VD++S+ L + GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKI
Sbjct: 661 VDSVSRLLREHGYQSRGFEIMYNGHTGKKLVAQVFFGPTYYQRLRHMVDDKI 712


>gi|109289351|gb|ABG29164.1| RNA polymerase II second largest subunit, partial [Entyloma
           arnoseridis]
          Length = 695

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/696 (64%), Positives = 545/696 (78%), Gaps = 27/696 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL GLFRMLF+KLTRD+  +++KCV++ K+  +  A+K+ TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLSGLFRMLFKKLTRDIYRHLEKCVEDQKEFFINTAVKSATITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNL+LM  I+VGS + PI+EFLEE+G +   ++      ++T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLSLMSLISVGSQSQPIIEFLEEFGLDQLTDMRRE-DARST 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G H+DP  LV TLR LRR+ D++TEV VV DIR KELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWLGTHQDPTGLVSTLRGLRRKDDISTEVSVVHDIREKELRLYTDAGRVMRPLF 239

Query: 279 IVEK--QRLLIKKRDIIALQQ-RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IV K  + L IK++ +  LQ   E   D GW DLV  G IEY+D EEEET MISM+I DL
Sbjct: 240 IVNKDDRSLFIKRKHMNWLQHGTEDGSDFGWEDLVQCGVIEYLDAEEEETVMISMSIEDL 299

Query: 336 -------------------VQARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQ 375
                                ARL     Y+ DT+THCEIHP++ILG+CASIIPFPDHNQ
Sbjct: 300 NYSRAYHQNTNSVRDTLSDPSARLVSLHTYSGDTWTHCEIHPAMILGICASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL TTRAM+HL FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLGTTRAMQHLKFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D EKK G +  E F +P R  T+
Sbjct: 420 IVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYTDLEKKSGMVEMEVFEKPSRETTI 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            ++HG+YDKLD DGL  PGTRVSGED+IIGKT P+  D E  G  S+ +T+RD S+ L+ 
Sbjct: 480 RLKHGTYDKLDADGLCAPGTRVSGEDIIIGKTVPLPCDSEELGLRSKLHTKRDASMPLKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E+G+VDQVL+TTN DG++FVKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDMP+TV
Sbjct: 540 TESGIVDQVLVTTNGDGVKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFTV 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EG+TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGDATPFT +TV+ +S  L   G
Sbjct: 600 EGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTSLTVEAVSNVLKGFG 659

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           YQ RG E MYNGHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660 YQSRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMV 695


>gi|396941916|gb|AFN89675.1| RNA polymerase II, partial [Nadsonia fulvescens]
          Length = 782

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/731 (62%), Positives = 558/731 (76%), Gaps = 40/731 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KAY+ GY++HR+LLCAL R  +DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 50  LLPHITQEEGFETRKAYFLGYMVHRMLLCALERADQDDRDHFGKKRLDLAGPLLANLFRM 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+D+  Y+QKCV+  KD NL  A+KA TIT+GLKYSLATGNWG Q  A   RAGV
Sbjct: 110 LFKKLTKDIYRYMQKCVETNKDFNLTLAVKANTITNGLKYSLATGNWGDQKKAMSARAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T++STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + PI+ FLEEWG E  E+  P   P +T+IFVNG W+G+HR+P  LV+T
Sbjct: 230 SLMACISVGSPSQPIVYFLEEWGMEPLEDYVPHASPNSTRIFVNGVWIGVHREPAHLVET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRR+ D+ +EV +VRDIR KE +I+TD GR  RPLF+V+       K  L++KK  I
Sbjct: 290 MKTLRRKGDIGSEVSIVRDIRNKEFKIFTDAGRVYRPLFLVDSNPESERKGELMLKKEHI 349

Query: 293 IAL---QQRESPEDG--------GWHDLVAKGFIEYIDTEEEETTMISMTINDL------ 335
             L   Q R+  +D          W+ LV  G +EYID EEEET MI+MT  DL      
Sbjct: 350 YQLMNNQDRDIDDDNYEAYDDVFTWNSLVGNGIVEYIDGEEEETVMIAMTPEDLELSKQA 409

Query: 336 ------VQARLHPEE-------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                  +  L P +       + + T+THCEIHPS++LG+ ASIIPFPDHNQSPRNTYQ
Sbjct: 410 QTGVQVAEEELDPAKRVRRTFNSQSHTWTHCEIHPSMVLGILASIIPFPDHNQSPRNTYQ 469

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMG+Y+TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CY
Sbjct: 470 SAMGKQAMGVYLTNYSVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCY 529

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDS+IMN SSIDRG FRSLFFRSY D+E+++G  V E+F RP R++T+ ++HG+Y
Sbjct: 530 SGYNQEDSMIMNXSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFXRPTRADTLRLKHGTY 589

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVD 560
           DKLDDDGL  PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VD
Sbjct: 590 DKLDDDGLXXPGVRVSGEDIIIGKTAPIPADAEELGQRTKYHTKRDASTPLRSTENGIVD 649

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVLLTTN +GLRFV VR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ +G+ PD+
Sbjct: 650 QVLLTTNQEGLRFVXVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSPQGVVPDL 709

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I NPHAIPSRMT+  LIEC++ KV++  G EGDATPFTDVTVD ISK L + GY  RGFE
Sbjct: 710 IXNPHAIPSRMTVAHLIECLLXKVSSLSGLEGDATPFTDVTVDAISKLLREHGYHSRGFE 769

Query: 681 TMYNGHTGRRL 691
            MYNGHTG++L
Sbjct: 770 VMYNGHTGKKL 780


>gi|94410922|gb|ABF18580.1| RNA polymerase II second largest subunit, partial [Hygrophorus
           auratocephalus]
          Length = 701

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/702 (64%), Positives = 545/702 (77%), Gaps = 36/702 (5%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV++ K+ NL  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLALAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + PI+EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSYSAPIIEFLEEWGMESLEENAHSSTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+GIHR+   L+ T+ +LRR+ D++ EV VVRDIR ++LR+YTD GR  RPLFIV 
Sbjct: 180 VNGVWMGIHRNAAHLIDTIVKLRRKDDISPEVSVVRDIRERKLRLYTDPGRVYRPLFIVN 239

Query: 282 KQRLLIKKRDIIALQQ-------------RESPEDGGWHDLVAKGFIEYIDTEEEETTMI 328
            Q+L+++K+ I  L +             +  P    W  LV +G IE +D EEEET MI
Sbjct: 240 NQQLVLQKKHIRWLNRGYGDKLEFNEKTGKMEPVKFKWESLVKEGIIELLDAEEEETVMI 299

Query: 329 SMTINDLVQARL-------HPEEA------------YADTYTHCEIHPSLILGVCASIIP 369
           SMT  DL  +RL       H  ++             A T+THCEIHPS+ILG+CASIIP
Sbjct: 300 SMTPEDLENSRLQQSGVDPHSNDSDFDPAQRLKAGVNAHTWTHCEIHPSMILGICASIIP 359

Query: 370 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 429
           FPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+L
Sbjct: 360 FPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFREL 419

Query: 430 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 489
           PAG N IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P
Sbjct: 420 PAGQNTIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 479

Query: 490 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 547
            R NT+ M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD 
Sbjct: 480 TRENTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRSHTRRDV 539

Query: 548 SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 607
           S  ++ +E+G+VDQVL+TTN++G +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY QE
Sbjct: 540 STPMKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITYRQE 599

Query: 608 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 667
           DMP+T EGI PDII+NPHAIPSRMTIG LIEC++ KVA  +G EGDATPFTD+TV+++S 
Sbjct: 600 DMPFTAEGIVPDIIINPHAIPSRMTIGHLIECLLSKVATLIGNEGDATPFTDLTVESVST 659

Query: 668 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
            L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660 FLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 701


>gi|52699818|gb|AAU86971.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
           ulmi]
          Length = 711

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/711 (62%), Positives = 555/711 (78%), Gaps = 40/711 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPL+ GLFRMLF KLT+DV  Y+QKCV++GK+ NL   +K+ T+T+GLKYSLAT
Sbjct: 1   KRLDLAGPLMAGLFRMLFNKLTKDVYKYLQKCVESGKEFNLTLGVKSTTLTNGLKYSLAT 60

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 61  GNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 120

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVGS + PI+EF+ +   E  EE  P   P +TK+FVN
Sbjct: 121 PAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQRNMEVLEEYEPTRNPHSTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+HRDP  LV T++ LRR+  +++EV ++RDIR +E +I+TD GR  RPLF++E  
Sbjct: 181 GVWVGVHRDPAHLVSTVQSLRRQNMISSEVSLIRDIRDREFKIFTDAGRVCRPLFVIEND 240

Query: 284 R-------LLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEET 325
           +       L++ K  +  L+  R+ P D           GW  L+A G +E++D EEEET
Sbjct: 241 KKSPNKGALVLTKELVRKLEDDRDLPPDMDPDEKKEKYFGWAGLLANGAVEFLDAEEEET 300

Query: 326 TMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCAS 366
            MI+MT  DL     VQA   P E  +D              T+THCEIHPS+ILG+CAS
Sbjct: 301 VMIAMTPEDLDISRQVQAGFAPPEPSSDPNARVKAPVSANQHTWTHCEIHPSMILGICAS 360

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 361 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           R+LPAG NAIVAIACYSGYNQEDSVIM+QSSIDRG FRSLF+RSY ++EK++G  + E F
Sbjct: 421 RELPAGQNAIVAIACYSGYNQEDSVIMSQSSIDRGLFRSLFYRSYVEQEKRVGMSLVEQF 480

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 544
            +P RS T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ +T+
Sbjct: 481 EKPLRSETLRVKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHTK 540

Query: 545 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
           RD S  LR +E+G+VD+VLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 541 RDASTPLRTTESGIVDRVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 600

Query: 605 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            QEDMP++ EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+
Sbjct: 601 RQEDMPFSREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDS 660

Query: 665 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           +S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI +
Sbjct: 661 VSRLLREHGYQSRGFEMMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 711


>gi|396941803|gb|AFN89619.1| RNA polymerase II, partial [Ambrosiozyma monospora]
          Length = 785

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/736 (60%), Positives = 558/736 (75%), Gaps = 43/736 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAYY GYII+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHISQDSGFETNKAYYLGYIINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRV 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGV
Sbjct: 110 LFRKLSRDIYRYMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  ++VGS++ PI   LEEWG E   +  P     AT++F+NG WVG HRDP +LV+T
Sbjct: 230 SLMSCVSVGSSSEPITYLLEEWGLEPLSDYDPHDHKNATRVFLNGNWVGNHRDPALLVET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
           +++LRR   ++ EV ++RDIR +E +I+TD GR  RPLFIV+       K  LL+ K   
Sbjct: 290 MKQLRRNGTISPEVSLIRDIREREFKIFTDAGRIYRPLFIVDNSEDSENKGGLLLTKEHC 349

Query: 290 RDIIALQQRESPEDG----------------GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
           R I+  +  E P+D                 GW  LV+ G +EY+D EEEET +I+M+  
Sbjct: 350 RKILEREVEEIPQDDEFDEDGEALPPIERIFGWDSLVSGGVVEYLDAEEEETVLIAMSPE 409

Query: 334 DLV---------QARLHPEE-----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           DL+         +  L P +      ++  +THCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 410 DLIPVSDQDRQKEYELDPAKRIKSVVHSQAFTHCEIHPSMILGVAASIIPFPDHNQSPRN 469

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL  T+AME+L FR+LPAG NAIVAI
Sbjct: 470 TYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAI 529

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RS+T+G + 
Sbjct: 530 CCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRNGISVVEEFEKPMRSSTLGFKA 589

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
           G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G
Sbjct: 590 GTYEKLDDDGLISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTENG 649

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVLLTTNA+GL+FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +GI 
Sbjct: 650 IVDQVLLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTVGITYRHEDMPFTAQGIV 709

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMT+  LIEC++ K+ +  G EGDATPFTD+TVD +S+ L + GYQ R
Sbjct: 710 PDLIINPHAIPSRMTVAHLIECLLSKIGSLRGYEGDATPFTDLTVDAVSRLLRENGYQSR 769

Query: 678 GFETMYNGHTGRRLTA 693
           GFE +YNGHTG++L A
Sbjct: 770 GFEVLYNGHTGKKLMA 785


>gi|354992131|gb|AER45772.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/687 (65%), Positives = 539/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQA GLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122 PAETPEGQAGGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ I  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHIRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+THCEIHPS+ILG+CASIIP PDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPLPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIG+T PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGETAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN  G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHQGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQEGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|300394756|gb|ADK11916.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
           himantioides]
          Length = 682

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/683 (65%), Positives = 538/683 (78%), Gaps = 26/683 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240 IVENQQLALQKKHIKWLNQGYRDDDGEEYKWEHLVKGGIIELLDAEEEETVMISMTPEDL 299

Query: 336 VQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL       H  +   D            T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300 ENSRLQSAGIDPHTNDGDYDPAARLKAGNNSHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLR 479

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDKL+DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480 MKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN++G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540 ENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GI PDI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600 GIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 675 QMRGFETMYNGHTGRRLTAMIFL 697
           Q RG E MY+GHTGR+L A ++L
Sbjct: 660 QSRGLEVMYHGHTGRKLQAQVYL 682


>gi|119644344|gb|ABL85619.1| RNA polymerase II second largest subunit [Xanthoria elegans]
          Length = 718

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/721 (61%), Positives = 549/721 (76%), Gaps = 47/721 (6%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL GLFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  T++S
Sbjct: 1   DDRDHFGKKRLDLAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLTLGVKQNTLSS 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YI+VG+ A PI+++L   G E+ EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYISVGTPADPIVDYLTNRGMESLEEYEPTRAP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG W+G H DP  LV  ++ +RR+  +  E  +VRDIR +E +I+TD GR  R
Sbjct: 181 HATKVFVNGTWIGCHNDPAHLVPHIQEVRRKGIIAHEASLVRDIRDREFKIFTDAGRVCR 240

Query: 276 PLFIVEK-----------------QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEY 317
           PLF+++                  Q+L  ++  ++ +   E  E   GW  LV  G +EY
Sbjct: 241 PLFVIDNDPKSENMGNLALTKDMVQKLEDERDMVLTMDPEERAEQVIGWEALVDSGAVEY 300

Query: 318 IDTEEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCE 354
           +D EEEET MI+MT  DL                       V+A L+P    A T+THCE
Sbjct: 301 VDAEEEETIMIAMTPEDLEISRQIQAGYAAPVPSEDAPNQRVKAPLNPT---AHTWTHCE 357

Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 414
           IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKP
Sbjct: 358 IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKP 417

Query: 415 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 474
           L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D 
Sbjct: 418 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDT 477

Query: 475 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 533
           EK++G  V E F +P R+ T+ ++HG+YDKLDDDGL  PG RVSGEDVIIGKTTPI+ D 
Sbjct: 478 EKRVGMTVLEKFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTPIAPDA 537

Query: 534 EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 592
           +  GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ +IPQIGDKF+S
Sbjct: 538 QEMGQRTKSHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFAS 597

Query: 593 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 652
           RHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EG
Sbjct: 598 RHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEG 657

Query: 653 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           DATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 658 DATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 717

Query: 713 I 713
           I
Sbjct: 718 I 718


>gi|52699794|gb|AAU86959.1| DNA-dependent RNA polymerase II second largest subunit [Coenogonium
           leprieurii]
          Length = 716

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/716 (61%), Positives = 553/716 (77%), Gaps = 40/716 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D +G KRLDLAGPL+ GLFR LF KLT+DV  Y+QKCV+ GK+ NL   +K+ TIT+GLK
Sbjct: 1   DXFGKKRLDLAGPLMAGLFRQLFSKLTKDVSKYLQKCVEGGKEFNLTLGVKSTTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGV+QVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGEQKKAASSKAGVAQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVGS + PI+EF+ +   +  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQRQMDVLEEYEPTRSPHAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T++ LRRR  +++EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPGHLVSTVQSLRRRNMISSEVTLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDT 320
           +++       K  L++ K  +  L+  RE P D           GW+ L+  G +E++D 
Sbjct: 241 VIDNDPKSPNKGSLVMTKEMVNKLEDDRELPADLEPEERKKRHFGWNGLLVNGAVEFLDA 300

Query: 321 EEEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLIL 361
           EEEET MI+MT +DL  +RL                    P +A   T+THCEIHPS+IL
Sbjct: 301 EEEETVMIAMTPDDLEISRLVQAGYALPEPSSDPNARVKAPVKAIQQTWTHCEIHPSMIL 360

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           GVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+M
Sbjct: 361 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSM 420

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           E+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY ++EK +G  
Sbjct: 421 EYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYVEQEKHLGME 480

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQAS 540
           V E F +P RS T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT P+ + DE  GQ +
Sbjct: 481 VVEQFEKPLRSETLRLKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTAPMRTNDEELGQRT 540

Query: 541 R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           + +T+RD S +LR +E G++D+VL+TTNA+GL+FVKVR R+ ++PQIGDKF+SRHGQKGT
Sbjct: 541 KLHTKRDASTALRSTENGIIDKVLITTNAEGLKFVKVRTRTTKVPQIGDKFASRHGQKGT 600

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           +G+TY QEDMP++ +GI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601 IGITYRQEDMPFSAQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 660

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           VTVD++S+ L + GYQ RGFE MYNGHTGR+L A IF GPTYYQRL+HMVD KI +
Sbjct: 661 VTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLVAQIFFGPTYYQRLRHMVDXKIXA 716


>gi|300394694|gb|ADK11885.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           marmorata]
          Length = 686

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/687 (65%), Positives = 541/687 (78%), Gaps = 27/687 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST-VCT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 334
           IVE Q+LL++K+ I  L Q     E  E+  W  LV  G IE +D EEEET MI+MT  D
Sbjct: 240 IVENQQLLLQKKHIKWLNQGYRDDEPAEEFKWDQLVKGGVIELLDAEEEETVMIAMTPED 299

Query: 335 LVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 300 LENSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420 IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ 
Sbjct: 480 RMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540 TENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGI PD+++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + G
Sbjct: 600 EGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKG 659

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGPT 700
           YQ RG E MY+GHTGR+L A ++LGPT
Sbjct: 660 YQSRGLEVMYHGHTGRKLQAQVYLGPT 686


>gi|396941847|gb|AFN89641.1| RNA polymerase II, partial [Pichia membranifaciens]
          Length = 785

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/736 (61%), Positives = 557/736 (75%), Gaps = 43/736 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAY+ GYII+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHISQDGGHETNKAYFMGYIINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+C+++G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGV
Sbjct: 110 LFRKLSRDIYKYMQRCIEHGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGSA+ PI   LEEWG E   +  P     +T++F+NG WVG HRDP MLV T
Sbjct: 230 SLMSCISVGSASEPITYLLEEWGLEPISDYDPQEHKLSTRVFLNGDWVGTHRDPGMLVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
           +R+LRR   ++ EV ++R+IR +E +I+TD GR  RPLFIV+       K  L + K   
Sbjct: 290 MRQLRRSGTISAEVSLIRNIREREFKIFTDAGRVYRPLFIVDDDPDSERKGGLKLTKEHC 349

Query: 290 RDIIALQQRESPEDGG----------------WHDLVAKGFIEYIDTEEEETTMISMTIN 333
           R I+  +  E P+D G                W  L+A+G +EY+D EEEET +I+M+  
Sbjct: 350 RRILDREIEEIPQDDGFDENGDPLDPIQRIYGWDSLLAEGVVEYLDAEEEETVLIAMSSE 409

Query: 334 DLVQARLHPE----EA----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           DL       E    EA           A ++THCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 410 DLSPVDEEDEMKDLEADPAKRIKNHINAHSFTHCEIHPSMILGVAASIIPFPDHNQSPRN 469

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL  T++ME L FR+LPAG NAIVAI
Sbjct: 470 TYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLAKTQSMEFLKFRELPAGQNAIVAI 529

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           ACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  + E+F +P RSNT+G + 
Sbjct: 530 ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRNGISIVEEFEKPMRSNTLGFKA 589

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
           G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 590 GTYEKLDDDGLISPGVRVSGDDIIIGKTVPIPTDTEELGQRTKYHTKRDASTPLRTTESG 649

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVLLTTNA+GL+FVKVR+R+ + PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ 
Sbjct: 650 IVDQVLLTTNAEGLKFVKVRMRTTKTPQIGDKFASRHGQKGTIGITYRNEDMPFTAEGVV 709

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ R
Sbjct: 710 PDLIINPHAIPSRMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSKLLRENGYQSR 769

Query: 678 GFETMYNGHTGRRLTA 693
           GFE MYNGHTG++L A
Sbjct: 770 GFEVMYNGHTGKKLMA 785


>gi|52699860|gb|AAU86991.1| DNA-dependent RNA polymerase II second largest subunit [Porpidia
           albocaerulescens]
          Length = 715

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/718 (62%), Positives = 551/718 (76%), Gaps = 47/718 (6%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KR DLAGPLL GLFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLKYS
Sbjct: 1   FGKKRXDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTLTNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           ++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+
Sbjct: 121 LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATKV 180

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181 FVNGVWVGVHRDPAHLVSTVQNLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 281 E-------KQRLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 322
           +       +  L++ K         R+IIA    E  E    GW  LV +G +EY+D EE
Sbjct: 241 DNDPKSSNRGNLVLTKEHVQKLEEDREIIASTDPEEREAKLMGWEGLVNQGVVEYVDAEE 300

Query: 323 EETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHPSL 359
           EET MI MT  DL                       V+A L+P    A T+THCEIHPS+
Sbjct: 301 EETVMIVMTPEDLEISRQIQAGFVLPEPSIDDPNKRVKAPLNPT---AHTWTHCEIHPSM 357

Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
           ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR
Sbjct: 358 ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTR 417

Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
           +ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G
Sbjct: 418 SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIG 477

Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ 538
             V E+F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  G 
Sbjct: 478 MNVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGL 537

Query: 539 ASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
            ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQK
Sbjct: 538 RTKLHMKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQK 597

Query: 598 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
           GT+G+TY QEDMP++ EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPF
Sbjct: 598 GTIGITYRQEDMPFSSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPF 657

Query: 658 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           T+VTVD++S+ L + GYQ RGFE MYNGHTG++L A +FLGPTYYQRL+HMVD KI +
Sbjct: 658 TEVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVAQVFLGPTYYQRLRHMVDXKIXA 715


>gi|300394692|gb|ADK11884.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           arida var. suffocata]
          Length = 686

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/687 (65%), Positives = 540/687 (78%), Gaps = 27/687 (3%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+
Sbjct: 1   DDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +   
Sbjct: 121 NTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST- 179

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
             TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  R
Sbjct: 180 VCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCR 239

Query: 276 PLFIVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 331
           PLFIVE Q+LL++K+ I  L Q     +  E+  W  LV  G IE +D EEEET MISMT
Sbjct: 240 PLFIVENQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMISMT 299

Query: 332 INDLVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPD 372
             DL   RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 300 PEDLENCRLQSAGIDTRQSDEDYDLAARLKSGINAHTWTHCEIHPSMILGICASIIPFPD 359

Query: 373 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 432
           HNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG
Sbjct: 360 HNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAG 419

Query: 433 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 492
            NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R 
Sbjct: 420 QNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRD 479

Query: 493 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 550
            T+ M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  
Sbjct: 480 TTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDGSTP 539

Query: 551 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 610
           L+ +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 540 LKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMP 599

Query: 611 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 670
           +T EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L 
Sbjct: 600 FTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLR 659

Query: 671 KCGYQMRGFETMYNGHTGRRLTAMIFL 697
           + GYQ RG E MY+GHTGR+L A ++L
Sbjct: 660 QKGYQSRGLEVMYHGHTGRKLQAQVYL 686


>gi|103001877|gb|ABF71525.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           flavum]
          Length = 714

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/711 (63%), Positives = 545/711 (76%), Gaps = 40/711 (5%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSL
Sbjct: 2   GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSL 61

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 62  ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 121

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+F
Sbjct: 122 VCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVF 181

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++
Sbjct: 182 VNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 241

Query: 282 KQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEE 323
                     L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEE
Sbjct: 242 NDPKSTNCGNLVLTKEHINKLEDDRDLPAIIDSEEKEAKFFGWDGLVNNGVVEYVDAEEE 301

Query: 324 ETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVC 364
           ET MI MT  DL     +QA     EA  D              T+THCEIHPS+ILG+C
Sbjct: 302 ETVMIVMTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGIC 361

Query: 365 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 424
           ASIIPFPDHNQSPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 362 ASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFL 421

Query: 425 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 484
            FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E
Sbjct: 422 KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVE 481

Query: 485 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 542
            F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ +
Sbjct: 482 QFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLH 541

Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
            +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 542 VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 601

Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 662
           TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 602 TYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 661

Query: 663 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           D++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV  KI
Sbjct: 662 DSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVXXKI 712


>gi|52699884|gb|AAU87003.1| DNA-dependent RNA polymerase II second largest subunit
           [Stereocaulon paschale]
          Length = 717

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/717 (61%), Positives = 552/717 (76%), Gaps = 41/717 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+N KD N+  A+K+ T+T+GL+
Sbjct: 1   DHFGKKRLDLAGPLLAGLFRMLFHKLTKDVYKYLQKCVENNKDFNMALAVKSTTLTNGLR 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLNSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNG WVG+HRDP  LV T++ LRR+ +++ EV ++RDIR +E +I+TD GR  RPLF
Sbjct: 181 KIFVNGVWVGVHRDPAHLVGTVQNLRRKGNISYEVSLIRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVEKQ-------RLLIKKRDIIALQQ-RE-----SPEDG-----GWHDLVAKGFIEYIDT 320
           +++          L++ K+ +  L++ RE      PE+      GW  L+  G +EY+D 
Sbjct: 241 VIDNDPRSSNCGNLVLTKQLVAQLEEDREYGATLDPEEKEKANIGWQRLLRSGVVEYVDA 300

Query: 321 EEEETTMISMTINDLVQAR-------LHPEEA-------------YADTYTHCEIHPSLI 360
           EEEET MI MT  DL  +R       + P +               A T+THCEIHPS+I
Sbjct: 301 EEEETIMIVMTPEDLEMSRQLEAGFSMPPADPDDLNKRVKATPNPTARTWTHCEIHPSMI 360

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LG+CASIIPFPDHNQSPRNTYQSAMG    G+++TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 361 LGICASIIPFPDHNQSPRNTYQSAMGXXXXGVFLTNYDVRMDTMANILYYPQKPLATTRS 420

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G 
Sbjct: 421 MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGM 480

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 539
            + E+F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 481 ALVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 540

Query: 540 SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
           ++ + +RD S  LR +E G+VDQVLL+TNADGLRF KVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 541 TKLHVKRDASTPLRSTENGIVDQVLLSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKG 600

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           T+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 601 TIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 660

Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           +VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 661 EVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 717


>gi|396941811|gb|AFN89623.1| RNA polymerase II, partial [Ascoidea rubescens]
          Length = 777

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/728 (61%), Positives = 551/728 (75%), Gaps = 35/728 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  E++KA++ GY+IHRLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  LLPHITQLEGYESRKAFFLGYMIHRLLLCALERKEADDRDHFGKKRLDLAGPLLAKLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFR LT+D+  Y+QKC+++ K  NL+ AIK+  IT GLKYSLATGNWG Q  A  ++AGV
Sbjct: 110 LFRNLTKDIFRYLQKCIESNKAFNLKMAIKSGIITEGLKYSLATGNWGEQKKAMSSKAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS +  ILE+LEE+G E  E   P      TKIFVNG WVGIH  P  +V  
Sbjct: 230 SLMSVISVGSPSSIILEYLEEFGLEPLESFVPHEQKDTTKIFVNGVWVGIHPSPSDVVSQ 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKR-- 290
           +R LRR  D+++EV ++RDIR KE +I TD GR  RPLF+VE         RL  KK   
Sbjct: 290 MRLLRRSADISSEVSIIRDIREKEFKIVTDAGRVCRPLFVVENDPDSDDFGRLKFKKEHT 349

Query: 291 ------DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE- 343
                 D   L + E  E   W  L+ +G IEY+D EEEET MI+MT  DL Q R+  E 
Sbjct: 350 DKLRRSDAGDLDEDERDELFTWQSLLQQGIIEYVDAEEEETIMIAMTPEDLEQTRIGAEL 409

Query: 344 ---------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
                            +  T+THCEIHP++ILGV ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 410 NSESVDAAKRIRQRNNFHVHTWTHCEIHPAMILGVAASIIPFPDHNQSPRNTYQSAMGKQ 469

Query: 389 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
           AMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQE
Sbjct: 470 AMGVFLTNYNVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQE 529

Query: 449 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
           DS+IMNQSSIDRG FRSLFFRSY D+E++ G  + E+F +P RSNT+ ++HG+Y+K+D+D
Sbjct: 530 DSMIMNQSSIDRGLFRSLFFRSYTDQERRKGMSLVEEFEKPLRSNTLRLKHGTYEKIDED 589

Query: 509 GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
           GL  PG RVSGED+IIGKTTPIS D E  G+ +++ T+RD S+ LR +E G+VDQV+LTT
Sbjct: 590 GLIAPGIRVSGEDIIIGKTTPISPDNEELGRKTQFHTKRDASMPLRSTENGIVDQVVLTT 649

Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           N +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+NPHA
Sbjct: 650 NHEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFSREGIVPDLIINPHA 709

Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFT-DVTVDNISKALHKCGYQMRGFETMYNG 685
           IPSRMT+  LIEC++ KV A MG EGDATPF  D+TVD IS  L+  GYQ RGFE +YNG
Sbjct: 710 IPSRMTVAHLIECLLSKVCALMGTEGDATPFNDDITVDAISDILYTFGYQSRGFEVLYNG 769

Query: 686 HTGRRLTA 693
           HTG++L A
Sbjct: 770 HTGKKLMA 777


>gi|103001231|gb|ABF71498.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           scabrida]
          Length = 713

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/711 (63%), Positives = 542/711 (76%), Gaps = 40/711 (5%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 61  ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVF 180

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++
Sbjct: 181 VNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 240

Query: 282 KQ-------RLLIKKRDIIALQ-----------QRESPEDGGWHDLVAKGFIEYIDTEEE 323
                     L + K  I  L+           + +  +  GW  LV  G +EY+D EEE
Sbjct: 241 NDPKSTHCGNLALTKEHINKLEDDKDLPATMDTEEKDAKFFGWDGLVNNGVVEYVDAEEE 300

Query: 324 ETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVC 364
           ET MI MT  DL  +R                     P    A T+THCEIHPS+ILG+C
Sbjct: 301 ETVMIVMTPEDLEISRQIQAGYTIPETSDDLNKRVKAPMNPTAHTWTHCEIHPSMILGIC 360

Query: 365 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 424
           ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 361 ASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFL 420

Query: 425 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 484
            FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E
Sbjct: 421 KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVE 480

Query: 485 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 542
            F +P RS+T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ ++ +
Sbjct: 481 QFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLH 540

Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
            +RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 541 VKRDVSTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 600

Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 662
           TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 601 TYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 660

Query: 663 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           D++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 661 DSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 711


>gi|52699833|gb|AAU86978.1| DNA-dependent RNA polymerase II second largest subunit [Lobaria
           quercizans]
          Length = 717

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/717 (62%), Positives = 548/717 (76%), Gaps = 41/717 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+  ++ NL   +K+ T+T+GLK
Sbjct: 1   DHXGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVEGNREFNLTLGVKSTTLTNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPAHLVSTVQSLRRRHWISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQR---------ESPEDG--GWHDLVAKGFIEYIDT 320
           +++       +  L++ K  +  L+           E  ED   GW  LV +G +EY+D 
Sbjct: 241 VIDNDPKSPNRGNLVLTKEHVNKLEDDKELGPDTDPEGREDKFRGWKGLVNQGVVEYVDA 300

Query: 321 EEEETTMISMTINDLVQAR------LHPEEAYAD--------------TYTHCEIHPSLI 360
           EEEET MI MT  DL  +R      + PE +  D              T+THCEIHPS+I
Sbjct: 301 EEEETVMIVMTPEDLEISRQIQAGYVMPEPSIDDPNKRVKAPLNPTAHTWTHCEIHPSMI 360

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LG+CASIIPFPDHNQSPRNTYQSAMG QAMG    NY  RMDT+A +LYYPQKPL TTR+
Sbjct: 361 LGICASIIPFPDHNQSPRNTYQSAMGXQAMGXXXXNYDQRMDTMANILYYPQKPLATTRS 420

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G 
Sbjct: 421 MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGM 480

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 539
            V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 481 SVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 540

Query: 540 SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
           ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 541 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 600

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           T+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 601 TIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 660

Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           +VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+
Sbjct: 661 EVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLHAQVFLGPTYYQRLRHMVDDKIHA 717


>gi|119644321|gb|ABL85618.1| RNA polymerase II second largest subunit [Xanthoria polycarpa]
          Length = 718

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/721 (61%), Positives = 548/721 (76%), Gaps = 47/721 (6%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DD DH+G KRLDLAGPLL GLFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  T++S
Sbjct: 1   DDSDHFGKKRLDLAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLALGVKQNTLSS 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YITVG+ A PI+++L   G E+ EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPADPIVDYLTNRGMESLEEYEPTRAP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG W+G H DP  LV  ++ +RR+  +  E  +VRDIR +E +I+TD GR  R
Sbjct: 181 HATKVFVNGTWIGCHNDPAHLVTHIQEIRRKGIIAHEASLVRDIRDREFKIFTDAGRVCR 240

Query: 276 PLFIVEK-----------------QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEY 317
           PLF+++                  Q+L  ++  ++ +   E  E   GW  LV  G +EY
Sbjct: 241 PLFVIDNDPKSENNGNLALTKDMVQKLEDERDMVLTMDPEERAEQVIGWEALVDSGAVEY 300

Query: 318 IDTEEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCE 354
           +D EEEET MI+MT  DL                       V+A L+P    A T+THCE
Sbjct: 301 VDAEEEETIMIAMTPEDLEISRHIQAGYAAPVPSEDAPNQRVKAPLNPT---AHTWTHCE 357

Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 414
           IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKP
Sbjct: 358 IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKP 417

Query: 415 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 474
           L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D 
Sbjct: 418 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDT 477

Query: 475 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 533
           EK++G  V E+F +P R+ T+ ++HG+YDKLDDDGL  PG RVSGEDVIIGKTTPI+ D 
Sbjct: 478 EKRVGMTVLENFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTPIAPDA 537

Query: 534 EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 592
           +  GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ +IPQIGDKF+S
Sbjct: 538 QEMGQRTKSHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFAS 597

Query: 593 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 652
           RHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EG
Sbjct: 598 RHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEG 657

Query: 653 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           DATPFT++TVD++SK L +  YQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 658 DATPFTEITVDSVSKLLREHSYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 717

Query: 713 I 713
           I
Sbjct: 718 I 718


>gi|52699772|gb|AAU86948.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           cervina]
          Length = 714

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/714 (62%), Positives = 545/714 (76%), Gaps = 38/714 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLK
Sbjct: 1   DXXGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGTPSQPIIDFMIQRNMEVLEEYEPQRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPAHLVSTVISLRRHDAISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVEKQ-------RLLIKKRDIIALQQ-RESPED--------GGWHDLVAKGFIEYIDTEE 322
           +++          L++ K  I  L+  ++ P D         GW+ LV KG +EY+D EE
Sbjct: 241 VIDNDPRSTNCGNLVLTKEHIQKLEDDKDLPPDYEIDEKNPPGWNGLVKKGVVEYVDAEE 300

Query: 323 EETTMISMT-------------------INDLVQARLHPEEAYADTYTHCEIHPSLILGV 363
           EET MI MT                    +DL++    P    A T+THCEIHPS+ILG+
Sbjct: 301 EETVMIVMTPEDLEISRQLQAGYNLPDTSDDLIKRVKAPMNPTAHTWTHCEIHPSMILGI 360

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 361 CASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEF 420

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 421 LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 480

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 541
           E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 481 EQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKL 540

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 541 HVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 600

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP+T +G+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601 ITYRQEDMPFTNQGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           VD++SK L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVD KI +
Sbjct: 661 VDSVSKLLREHGYQSRGFEVMYNGHTGRKLVGQVFLGPTYYQRLRHMVDXKIXA 714


>gi|258562140|gb|ACV81792.1| RNA polymerase II second largest subunit [Ramaria stricta]
          Length = 679

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/678 (65%), Positives = 531/678 (78%), Gaps = 28/678 (4%)

Query: 72  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 130
           Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR T+AS
Sbjct: 3   YLQKCVETHKEFNLNLAVKPNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFAS 62

Query: 131 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 190
           TLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGSA
Sbjct: 63  TLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSA 122

Query: 191 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 250
           + P++EFLEEWG E  EE + +  P  TK+FVNG W+G+HRDP  LVKTL++LRR+ D+ 
Sbjct: 123 SPPVIEFLEEWGLETLEENAHSTTP-CTKVFVNGVWLGVHRDPANLVKTLKKLRRKADIP 181

Query: 251 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG----- 305
            EV +VRDIR +ELR+YTD GR  RPLF+VE Q+L+++K+ I  LQQ    +D       
Sbjct: 182 AEVSIVRDIREQELRVYTDAGRVCRPLFVVENQQLVLQKKHIKWLQQGYRDDDPAQAPYR 241

Query: 306 WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA-------------------Y 346
           W  +V  G IE +D EEEET MISMT  DL  +RL  +                     +
Sbjct: 242 WITMVKSGIIELLDAEEEETVMISMTPEDLETSRLQQQGMESAVNDSEFDPAARLKAVMH 301

Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
           A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A 
Sbjct: 302 AHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMAN 361

Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
           +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+
Sbjct: 362 ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSM 421

Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
           ++RSY D EK  G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V GED+IIGK
Sbjct: 422 YYRSYMDMEKTSGIHQLEEFSKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGK 481

Query: 527 TTPI-SQDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           T PI  + E  GQ  S +TRRD S  L+ +E+G+VDQVL+TTN+DG RFVKVRVRS RIP
Sbjct: 482 TAPIPPESEELGQKTSNHTRRDVSTPLKSTESGIVDQVLITTNSDGHRFVKVRVRSTRIP 541

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           Q GDKF+SRHGQKGT+G+TY QEDMP+TVEGITPDII+NPHAIPSRMTIG L+EC++ KV
Sbjct: 542 QTGDKFASRHGQKGTIGITYRQEDMPFTVEGITPDIIINPHAIPSRMTIGHLVECLLSKV 601

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           A  +G EGDATPFT++TV+++S  L K GY  RG E MY+GHTGR+L A ++LGPTYYQR
Sbjct: 602 ATLIGNEGDATPFTELTVESVSTLLRKQGYHSRGLEVMYHGHTGRKLQAQVYLGPTYYQR 661

Query: 705 LKHMVDDKIHSRGRGPVQ 722
           LKHMVDDKIHSR RGPVQ
Sbjct: 662 LKHMVDDKIHSRARGPVQ 679


>gi|119644183|gb|ABL85611.1| RNA polymerase II second largest subunit [Phaeophyscia orbicularis]
          Length = 718

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/717 (62%), Positives = 548/717 (76%), Gaps = 41/717 (5%)

Query: 38  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 97
           DRDH+G KRLDLAGPLL GLFR LF KLT+D+  Y++ C++N K+  L   +K+ T+T+G
Sbjct: 2   DRDHFGKKRLDLAGPLLAGLFRTLFNKLTKDLEKYLKVCIENSKEFILNLGVKSSTLTNG 61

Query: 98  LKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 156
           LKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN
Sbjct: 62  LKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLHN 121

Query: 157 SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 216
           + WG++CPAETPEGQACGLVKNLALM +++VG+ +  I+ FL +   E+ EE  P   P 
Sbjct: 122 THWGLVCPAETPEGQACGLVKNLALMCHVSVGTPSEGIVPFLLQRQMESLEEYEPHASPN 181

Query: 217 ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 276
           ATKIFVNG WVG+HR+P  LV  ++ LRR+  +  EV ++RDIR +E RI TD GR  RP
Sbjct: 182 ATKIFVNGVWVGVHRNPAHLVTAVQSLRRKHVLEPEVSLIRDIREREFRILTDQGRVLRP 241

Query: 277 LFIVEKQ-------RLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYI 318
           LF+VE          L+  K     L   +E P D           GW+ L+ +G +EY+
Sbjct: 242 LFVVETDPKSPNCGNLVFNKGHSNKLDDDQEVPHDMDKELREKMIFGWNGLINEGVVEYV 301

Query: 319 DTEEEETTMISMTINDLVQAR--------------------LHPEEAYADTYTHCEIHPS 358
           D EEEET MI MT  DL  +R                      P    A T+THCEIHPS
Sbjct: 302 DAEEEETVMIVMTPQDLAMSRQLQAGYALAEPDPDEPNRRVTAPMNPTAHTWTHCEIHPS 361

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM+T++++LYYPQKPL TT
Sbjct: 362 MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMSHILYYPQKPLATT 421

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++
Sbjct: 422 RSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRV 481

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 537
           GT V E F +P R++T+ ++HG+YDKLDDDG+  PG RVSG+DVIIGKT PIS D E  G
Sbjct: 482 GTNVLEQFEKPMRADTLKLKHGTYDKLDDDGIIIPGARVSGDDVIIGKTAPISPDAEELG 541

Query: 538 QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           Q ++ +T+RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 542 QRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 601

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KVA+  G EGDATP
Sbjct: 602 KGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECQLSKVASLRGLEGDATP 661

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           FT++TVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 662 FTEITVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718


>gi|396941867|gb|AFN89651.1| RNA polymerase II, partial [Wickerhamia fluorescens]
          Length = 782

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/734 (60%), Positives = 552/734 (75%), Gaps = 41/734 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LP++   +  E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPNITQEEGFESRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+Q+CV+N K+ NL  A+K++T+T GL+YSLATG WG Q NA  +RA V
Sbjct: 109 LFRKLTKDIYNYMQRCVENDKEFNLTLAVKSQTVTDGLRYSLATGXWGEQKNAMSSRAXV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T
Sbjct: 229 SLMTCISVGTPSEPILYFLEEWGMEPLEDYVPSNAPDSTRVFVNGVWVGTHREPAHLVDT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +
Sbjct: 289 IRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEQV 348

Query: 293 IALQQRESPEDG-------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR------ 339
             +   E  E          W  LV+ G +EY+D EEEET MI+MT  DL  ++      
Sbjct: 349 HKILNSEYDEYDDDDMNHYNWSSLVSDGVVEYVDAEEEETIMIAMTPEDLEASKSLLSES 408

Query: 340 ----LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
               +  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 409 ELKDVQMEEQELDPAKRIKPTYSGATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 468

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAI+C
Sbjct: 469 QSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAISC 528

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+
Sbjct: 529 YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLKHGT 588

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMV 559
           Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+V
Sbjct: 589 YEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRATESGIV 648

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVLLTTN DG +FVKVR+     PQIG KF+SRHGQKGT+G+TY  EDMP+T +GI PD
Sbjct: 649 DQVLLTTNGDGAKFVKVRMXXXXXPQIGXKFASRHGQKGTIGITYRHEDMPFTSQGIVPD 708

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGF
Sbjct: 709 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGF 768

Query: 680 ETMYNGHTGRRLTA 693
           E MYNGHTG++L A
Sbjct: 769 EVMYNGHTGKKLMA 782


>gi|103001574|gb|ABF71513.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 709

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/708 (63%), Positives = 541/708 (76%), Gaps = 40/708 (5%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYS
Sbjct: 2   FGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYS 61

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 62  LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 121

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 122 LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 181

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 182 FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 241

Query: 281 EKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 322
           +          L++ K         +D+ A    E  E    GW  LV  G +EY+D EE
Sbjct: 242 DNDPKSTNCGNLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEE 301

Query: 323 EETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGV 363
           EET MI MT  DL  +R                     P    A T+THCEIHPS+ILG+
Sbjct: 302 EETVMIVMTPEDLEISRQIQAGYAMPETSDDLNKRVKAPMNPTAHTWTHCEIHPSMILGI 361

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSPRNTYQSAMGKQ+MG+++TNY  RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 362 CASIIPFPDHNQSPRNTYQSAMGKQSMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEF 421

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 422 LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 481

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 541
           E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 482 EQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKL 541

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 542 HVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 601

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 602 ITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 661

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           VD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 662 VDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 709


>gi|119644196|gb|ABL85612.1| RNA polymerase II second largest subunit [Physconia muscigena]
          Length = 718

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/718 (62%), Positives = 549/718 (76%), Gaps = 41/718 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL GLFR LF KLT+DV  Y++ C++N K+  L   IK+ T+T+
Sbjct: 1   DDRDHFGKKRLDLAGPLLAGLFRTLFNKLTKDVEKYLKVCIENNKEFILNLGIKSSTLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM +++VG+ +  I+ FL +   E+ EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCHVSVGTPSDGIVPFLLQRQMESLEEYEPHTSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATKIFVNG WVG+HR+P  LV  ++ LRR+  +  EV ++RDIR +E RI TD GR  R
Sbjct: 181 NATKIFVNGVWVGVHRNPVHLVNAVQTLRRKHVLEPEVSLIRDIRDREFRILTDQGRVLR 240

Query: 276 PLFIVEKQ-------RLLIKKRDIIALQQRES-PEDG----------GWHDLVAKGFIEY 317
           PLF+V+          L+  K     L   +S P D           GW+ L+ +G +EY
Sbjct: 241 PLFVVDNDAKSPNCGNLVFNKEHSQRLDDDDSVPYDMDKEVREKIIFGWNGLINEGVVEY 300

Query: 318 IDTEEEETTMISMTINDLVQAR--------------------LHPEEAYADTYTHCEIHP 357
           +D EEEET MI MT  DL  +R                      P    A T+THCEIHP
Sbjct: 301 VDAEEEETVMIVMTPQDLAMSRQLQAGYALAEPDPDEPNRRVTAPINPTAHTWTHCEIHP 360

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM+T++++LYYPQKPL T
Sbjct: 361 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMSHILYYPQKPLAT 420

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK+
Sbjct: 421 TRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKR 480

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +GT V E F +P RS+T+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481 IGTNVLEKFEKPMRSDTLKLKHGTYDKLDEDGLIIPGARVSGEDIIIGKTAPIAPDAEEM 540

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ +T+RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ ++PQIGDKF+SRHG
Sbjct: 541 GQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHG 600

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 601 QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 660

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718


>gi|93278291|gb|ABF06601.1| RNA polymerase II second largest subunit, partial [Cheimonophyllum
           candidissimum]
          Length = 690

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/691 (65%), Positives = 541/691 (78%), Gaps = 25/691 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LF MLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFXMLFRKLTKDVYRYLQKCVEAHKEFNLALAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q     ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-TTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
           +Q+L ++K+ +  L Q  ++  E   W  LV  G +E +D EEEE  MISMT  DL  +R
Sbjct: 240 EQQLALQKKHVKWLAQGHKDDGEVYKWEHLVKGGIVELLDAEEEEXVMISMTPEDLENSR 299

Query: 340 LHPE-------------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           L                      +  A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 300 LQQSGVDPHANDGEFDPAARLKADINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 359

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 360 YQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 419

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRS+++R Y D EKK G    E+F +P R  T+ M+HG
Sbjct: 420 CYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYMDLEKKSGIQQLEEFEKPSRQQTLRMKHG 479

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS-RYTRRDHSISLRHSETGM 558
           +YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +  +TRRD S  L+ +E+GM
Sbjct: 480 TYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTPTHTRRDVSTPLKSTESGM 539

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTN DG +FVKVR+RS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 540 VDQVLITTNHDGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVP 599

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 600 DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSMYLRQKGYQSRG 659

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
            E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660 LEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690


>gi|358030894|dbj|BAL15356.1| RNA polymerase II second largest subunit, partial [Olpidium
           bornovanus]
          Length = 895

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/789 (57%), Positives = 569/789 (72%), Gaps = 77/789 (9%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPHV         K+++FGY+IHRL + AL RR  DDRDHYG KR+DLAGPL+ GLFR 
Sbjct: 107 FLPHVDDYVTSAAHKSFFFGYMIHRLCMAALERRELDDRDHYGKKRMDLAGPLISGLFRN 166

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRK+T D+ A+++KC+D  ++ NL  A+K+  IT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 167 LFRKMTTDIGAHLRKCMDQNREFNLTLAVKSNHITNGLKYSLATGNWGDQQRAMQSRAGV 226

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 227 SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 286

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ----ATKIFVNGCWVGIHRDPEM 235
           +++ Y++VG+ ++ + +  EE G +  +E S   + Q      K+F+NG WVG+  DP  
Sbjct: 287 SMLSYVSVGAKSHVVRQIFEESGVQYLDE-SDQEMEQLRLDTIKVFLNGGWVGMISDPTK 345

Query: 236 LVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL 295
           L++ LR L+ + D N E+  VRD+R +E+R++TD+GRC RPLF+V++ RL+IKK  I AL
Sbjct: 346 LLQALRGLKCQPDRNFEISFVRDVRDREIRVFTDHGRCMRPLFVVKEGRLVIKKSHIRAL 405

Query: 296 QQ---------------------------------RESPEDGGWHDLVAKGFIEYIDTEE 322
                                              ++  +   W DLV    +EY+D EE
Sbjct: 406 TNPVRLSIFWRKLSIXSAYCVHGVDISMSAYIFECQDFEQRWKWSDLVMTSIMEYVDAEE 465

Query: 323 EETTMISMTINDL-------------------VQARLHPE-EAYADTYTHCEIHPSLILG 362
           EET MI M+  DL                   + ARL P    +A T+THCE+HP++ILG
Sbjct: 466 EETIMICMSPEDLADSREFSKTGIPQRRLMADMTARLKPVVNTHASTWTHCEVHPAMILG 525

Query: 363 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 422
           VCASIIPFPDHNQSPRNTYQSAMGKQAMGIY  NY  RMDTLA +LYYPQKPL TTRAM 
Sbjct: 526 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYALNYXARMDTLANILYYPQKPLATTRAMN 585

Query: 423 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM---- 478
           +L FR LPAG NAI+AIACYSGYNQEDSVIMNQS+IDRG FRSL++RSY D+EKK+    
Sbjct: 586 YLQFRHLPAGQNAIIAIACYSGYNQEDSVIMNQSAIDRGLFRSLYYRSYMDQEKKVVSVS 645

Query: 479 ------------GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
                       GT V E F +P R  T+ ++HG+YDK++ DGL  PGTRVSGED+IIGK
Sbjct: 646 GARCAGPRACHSGTTVMESFEKPTRETTLRLKHGTYDKIEIDGLIAPGTRVSGEDIIIGK 705

Query: 527 TTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           TTPI  D E  GQ    +T+RD S  L+ +ETG+VDQV++TTN++GL+FVKVRVRS R+P
Sbjct: 706 TTPIPPDSEELGQRQDTHTKRDASTPLKSTETGIVDQVMVTTNSEGLKFVKVRVRSTRVP 765

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           QIGDKF+SRHGQKGT+G+TY QEDMP+T +G+TPD+I+NPHAIPSRMTIG L+EC++ KV
Sbjct: 766 QIGDKFASRHGQKGTIGITYRQEDMPFTADGLTPDLIINPHAIPSRMTIGHLVECLLSKV 825

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           +   G EGDATPFT+VTV++IS AL   GYQ RGFE MY+GHTGR+L A IFLGPTYYQR
Sbjct: 826 STLGGSEGDATPFTNVTVESISAALEAHGYQKRGFEVMYHGHTGRKLGAQIFLGPTYYQR 885

Query: 705 LKHMVDDKI 713
           LKHMVDDKI
Sbjct: 886 LKHMVDDKI 894


>gi|46277265|gb|AAS86823.1| RNA polymerase II second largest subunit, partial [Eschscholzia
           californica]
          Length = 539

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/540 (83%), Positives = 497/540 (92%), Gaps = 1/540 (0%)

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALMV +TVGSAA PILE L ++GTE FEEISPA I QATK+F+NGC
Sbjct: 1   ETPEGQACGLVKNLALMVSVTVGSAANPILEILNDFGTEGFEEISPATISQATKVFLNGC 60

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 285
           WVGIHR+ ++LV  LR LRRRV VNTEVG+ RD RLKELRIYTDYGRC RPLFIVE QRL
Sbjct: 61  WVGIHRNADVLVNNLRLLRRRVLVNTEVGITRDTRLKELRIYTDYGRCCRPLFIVENQRL 120

Query: 286 LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
           LIK++DI  +QQRE+P++GGW DLVAKG++EYIDTEEEE TMISMTINDL     +P+EA
Sbjct: 121 LIKRKDIRVIQQRENPDEGGWRDLVAKGYVEYIDTEEEENTMISMTINDLASV-FNPKEA 179

Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
           Y+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY TNYQ RMDTLA
Sbjct: 180 YSVTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYATNYQLRMDTLA 239

Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
           ++LYYPQKPLVTTRAMEHLHFRQLPAG+NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 240 HILYYPQKPLVTTRAMEHLHFRQLPAGMNAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 299

Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
           L+FRSY+ EEKKMG LVKE+FGRP+R NT+GM+HGSYDKLD+DGLAPPGT VSGED+IIG
Sbjct: 300 LYFRSYKGEEKKMGNLVKENFGRPNRENTIGMKHGSYDKLDNDGLAPPGTLVSGEDIIIG 359

Query: 526 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
           KT  I QDE+QGQ+S+Y++RD S SL H+E G+VDQV+LTTNADG +FVK R+RSVRIPQ
Sbjct: 360 KTVQIVQDESQGQSSQYSQRDCSTSLHHNECGVVDQVMLTTNADGSKFVKTRMRSVRIPQ 419

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           +GDKFSSRHGQKGT+GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI QLIECIMGKVA
Sbjct: 420 VGDKFSSRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIAQLIECIMGKVA 479

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           AHMGKEGDATPFTDVTVDNIS+ALHKCGYQM GFETMYNGHTGR+LT+MIF+GPTYYQRL
Sbjct: 480 AHMGKEGDATPFTDVTVDNISQALHKCGYQMHGFETMYNGHTGRKLTSMIFIGPTYYQRL 539


>gi|396941821|gb|AFN89628.1| RNA polymerase II, partial [Zygosaccharomyces rouxii]
          Length = 773

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/724 (62%), Positives = 553/724 (76%), Gaps = 31/724 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  E++KA++ GY+I+RLLLCAL RR +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 50  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKT 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRD+  Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTRDIFRYMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+   PI+ FL EWG E  E+  P   P+AT++FVNG W G+HR+P  L++T
Sbjct: 230 SLMSCISVGTDPMPIITFLSEWGMEPLEDYIPHQSPEATRVFVNGVWHGVHRNPARLMET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDII 293
           LR LRR+ D+N EV +VRDIR KEL+I+TD GR  RPLFIV+      ++ L I+K  I 
Sbjct: 290 LRTLRRKGDINPEVSMVRDIREKELKIFTDAGRVYRPLFIVDDDETLNRKELRIRKGHIS 349

Query: 294 ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHP 342
            L   E           E+  W  L+  G +EYID EEEET +ISM   DL  VQ     
Sbjct: 350 KLMATEYQDIEGGFEDSEEYTWTSLLNDGLVEYIDAEEEETILISMQPEDLEPVQENTFN 409

Query: 343 EEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
           E+            +A T+THCE+HPS+ILGV ASIIPFPDHNQSPRNTYQ+AMGKQAMG
Sbjct: 410 EDDDDLARRIKATHHATTFTHCEVHPSMILGVAASIIPFPDHNQSPRNTYQAAMGKQAMG 469

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 470 VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 529

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLFFRSY D+EKK G    E F +P   NT+ M+ G+YDK D DGL 
Sbjct: 530 IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSXTETFEKPQXXNTLRMKXGTYDKXDXDGLI 589

Query: 512 PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSGED I GKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQ+L+TTN D
Sbjct: 590 APGVRVSGEDXIXGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQILITTNQD 649

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GL+FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 650 GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPS 709

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 710 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 769

Query: 690 RLTA 693
           +L +
Sbjct: 770 KLMS 773


>gi|396941911|gb|AFN89673.1| RNA polymerase II, partial [Pachysolen tannophilus]
          Length = 792

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/743 (59%), Positives = 552/743 (74%), Gaps = 50/743 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPL+  LFR+
Sbjct: 50  FLPHITQDEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLMANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+D+  Y+QKCV+  +D NL  A+++ TIT+GLKYSLATGNWG Q  A  +RAGV
Sbjct: 110 LFRKLTKDIFRYMQKCVETNRDFNLTLAVRSNTITAGLKYSLATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ +  IL +LEEWG E  E+  P   P+A +IFVNG WVG HR+P  L K 
Sbjct: 230 SLMSCISVGTPSDAILLYLEEWGMEPVEDFVPHDSPEAVRIFVNGVWVGTHREPADLTKA 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           ++ LRR+ D++ EV +VRDIR KE +I+TD GR  RPLF+VE       K  L ++K  +
Sbjct: 290 IKDLRRQGDISPEVSIVRDIREKEFKIFTDAGRVYRPLFVVEDDENSEHKGELKLRKSHV 349

Query: 293 IAL----QQRESPEDG----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
             L     + +  E+G          GW  LV  G IEY+D EEEET MI+M I+DL+ A
Sbjct: 350 NKLLNPVDEDDYMENGDEEEHEGAIYGWSSLVNNGVIEYVDAEEEETIMIAMQIDDLIAA 409

Query: 339 RLHPE--------------------------EAYADTYTHCEIHPSLILGVCASIIPFPD 372
           + + E                               T+THCEIHP++ILGV ASIIPFPD
Sbjct: 410 KHNQEHNIQREVEELNNGDDIDAAKRIKPSLSGTTHTFTHCEIHPAMILGVAASIIPFPD 469

Query: 373 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 432
           HNQSPRNTYQSAMGKQAMG++ TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG
Sbjct: 470 HNQSPRNTYQSAMGKQAMGVFATNYNVRMDTMANILYYPQKPLGTTRSMEFLRFRELPAG 529

Query: 433 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 492
            NAIVAI+CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E + G  V  +F +P RS
Sbjct: 530 QNAIVAISCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYSDQETRSGMSVLAEFEKPHRS 589

Query: 493 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSIS 550
           +T+G + G+Y+KLDDDGL  PG RVSG D+IIGKT PI  D E  GQ ++Y T+RD S+ 
Sbjct: 590 DTLGFKQGTYEKLDDDGLIAPGVRVSGADIIIGKTIPIQPDSEELGQRTKYHTKRDASMP 649

Query: 551 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 610
           LR +E G+VDQVLLTTN +GL+FVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP
Sbjct: 650 LRTTENGIVDQVLLTTNQEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRHEDMP 709

Query: 611 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 670
           ++ EG+ PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDATPFTD+TV+ +SK L 
Sbjct: 710 FSSEGVVPDLIINPHAIPSRMTVAHLIECLLSKVSSMTGMEGDATPFTDLTVEQVSKLLR 769

Query: 671 KCGYQMRGFETMYNGHTGRRLTA 693
           + GY  RGFE MYNGHTG++L A
Sbjct: 770 ENGYHSRGFEVMYNGHTGKKLMA 792


>gi|52699831|gb|AAU86977.1| DNA-dependent RNA polymerase II second largest subunit [Leptogium
           cyanescens]
          Length = 713

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/712 (62%), Positives = 549/712 (77%), Gaps = 41/712 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFRMLF KLTRDV  Y+QKCV+  ++ NL   IK+ T+T+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAGLFRMLFNKLTRDVYKYLQKCVETNREFNLTLGIKSTTLTNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 281
           G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++E  
Sbjct: 182 GVWVGVHRDPVHLVSTVQTLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIEND 241

Query: 282 -----KQRLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEET 325
                +  L++ K  I+ L++ +       P++      GW  LV +G +EY+D EEEET
Sbjct: 242 PKSPNRGNLVLTKEHILRLEEDKELGPDMDPDEREAKFMGWEGLVNQGVVEYVDAEEEET 301

Query: 326 TMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHPSLILGVCA 365
            MI MT  DL     VQ     EE   D               T+THCEIHPS+ILG+CA
Sbjct: 302 VMIVMTPEDLEISKNVQMGYAVEEPSIDDPNRRVKAPVNPTAHTWTHCEIHPSMILGICA 361

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMG QAMG+++TNY+ RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 362 SIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLK 421

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E 
Sbjct: 422 FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQ 481

Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 543
           F +P R++T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT P+S D E  GQ ++ + 
Sbjct: 482 FEKPMRTDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPLSADNEELGQRTKMHV 541

Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
           +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+T
Sbjct: 542 KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGVT 601

Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
           Y QEDMP+T EG  PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD
Sbjct: 602 YRQEDMPFTSEGQVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEVTVD 661

Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           ++S+ L + GYQ RGFE MYNGHTGR+L A IFLGPTYYQRL+HMVDDKI +
Sbjct: 662 SVSRLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIXA 713


>gi|396941805|gb|AFN89620.1| RNA polymerase II, partial [Candida boidinii]
          Length = 783

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/735 (60%), Positives = 553/735 (75%), Gaps = 43/735 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAYY GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL GLFR+
Sbjct: 50  FLPHISQDSGFETNKAYYLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLAGLFRV 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRD+  Y+Q+C++  +D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGV
Sbjct: 110 LFRKLTRDIYRYMQRCIERSEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+ IGR+ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYASTLSHLRRTNTSIGRDSKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + PI   LEEWG E  ++  P     AT++F+NG WVG+ RDP MLV+T
Sbjct: 230 SLMTGISVGSPSEPITYLLEEWGLEPLQDYEPQH-KHATRVFLNGNWVGVTRDPAMLVQT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
           +R+LRR   ++ EV ++RDIR +E +I+TD GR  RPLFIVE       K  L + K   
Sbjct: 289 MRQLRRTGSISPEVSLIRDIREREFKIFTDAGRVYRPLFIVEDNEQHERKGELKLTKSHC 348

Query: 290 -----RDIIALQQRESPEDG----------GWHDLVAKGFIEYIDTEEEETTMISMTIND 334
                R+I  + Q    E+G          GW  LV  G IEY+D EEEETT+I+M+  D
Sbjct: 349 RKILDREIYEVSQEGYDENGDPLPPIQSTFGWDYLVTNGIIEYLDAEEEETTLIAMSPED 408

Query: 335 L---------VQARLHPEE-----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           L         V   L P +       A  +THCEIHPS++LGV ASIIPFPDHNQSPRNT
Sbjct: 409 LSPVIETDKQVTNELDPAKRIKNIVNAHAFTHCEIHPSMVLGVAASIIPFPDHNQSPRNT 468

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG++ TNY  RMDT+A +LYYPQKPL  T++ME+L FR+LPAG NA+VAIA
Sbjct: 469 YQSAMGKQAMGVFATNYNVRMDTMANILYYPQKPLAKTQSMEYLKFRELPAGQNAVVAIA 528

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RSNT+G++  
Sbjct: 529 CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRNGISVVEEFEKPMRSNTLGLKAS 588

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 558
           +Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+
Sbjct: 589 TYEKLDDDGLISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTENGI 648

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTN++GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI P
Sbjct: 649 VDQVLLTTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRNEDMPFTAQGIVP 708

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +S+ L + GYQ RG
Sbjct: 709 DLIINPHAIPSRMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSRLLRENGYQSRG 768

Query: 679 FETMYNGHTGRRLTA 693
           FE +YNGHTG++L A
Sbjct: 769 FEVLYNGHTGKKLMA 783


>gi|396941945|gb|AFN89689.1| RNA polymerase II, partial [Magnusiomyces magnusii]
          Length = 778

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/726 (61%), Positives = 549/726 (75%), Gaps = 36/726 (4%)

Query: 2   LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
           LP++   +  ET+KA++ GY+IH+LLL AL R   DDRDH+G KRLDLAGPLL  LFR+L
Sbjct: 51  LPNITQEEGFETRKAFFLGYMIHKLLLVALDRSDPDDRDHFGKKRLDLAGPLLAQLFRIL 110

Query: 62  FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 120
           F+KLTR +  Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  TRAGVS
Sbjct: 111 FKKLTRXIYRYMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGVS 170

Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
           QVLNR T++STLSHLRR N+PIGR+GK+A+PRQLHN+ WG +CPAETPEGQACGLVKNL+
Sbjct: 171 QVLNRYTFSSTLSHLRRTNTPIGRDGKIARPRQLHNTHWGFVCPAETPEGQACGLVKNLS 230

Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
           L+  ++VG+ + PI+ FL EWG E  E+  P   P AT+IFVNG WVG+H  P  +  T+
Sbjct: 231 LLSGVSVGTPSNPIVCFLSEWGMEPLEDYVPHAAPNATRIFVNGVWVGVHTXPGAIAXTM 290

Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-----KQRLLIKK---RDI 292
           + LRR+ D++ EV + RDIR KELRI TD GR  RPLF VE     K +L + K     +
Sbjct: 291 KTLRRKGDISAEVSITRDIRSKELRILTDAGRVYRPLFXVEHEGPNKGQLKVTKDLVNTV 350

Query: 293 IALQQRESPEDGG----------WHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQ 337
           IA Q+ E+  D            W   V  G IEYID EEEET MI+M+  DL      Q
Sbjct: 351 IAQQEEEAIGDEDVKGDMEQHIDWEHFVKNGVIEYIDGEEEETVMIAMSNEDLEYSRHAQ 410

Query: 338 ARLHPE----------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
           A +  E             A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 411 AGVEMEFREGARRSTFNPNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGK 470

Query: 388 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 447
           QAMG+Y+TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQ
Sbjct: 471 QAMGVYLTNYNVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQ 530

Query: 448 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 507
           EDS+IMNQ SIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLDD
Sbjct: 531 EDSMIMNQGSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKLDD 590

Query: 508 DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLT 565
           DGL  PG RV+GED+IIGKT PI  D + QGQ +++ T+RD S  LR +E G+VDQVLLT
Sbjct: 591 DGLISPGIRVAGEDIIIGKTAPIPPDSQEQGQRTQFHTKRDVSTPLRSTENGIVDQVLLT 650

Query: 566 TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 625
           TN +GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EG+ PD+++NPH
Sbjct: 651 TNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPFSAEGVVPDLVINPH 710

Query: 626 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 685
           AIPSRMT+  LIEC++ KV+A  G EGDATPFTDVTVD++SK L + GYQ RGFE MY+G
Sbjct: 711 AIPSRMTVAHLIECLLSKVSALSGYEGDATPFTDVTVDDVSKLLRENGYQSRGFEVMYHG 770

Query: 686 HTGRRL 691
           HTGR L
Sbjct: 771 HTGRXL 776


>gi|103002002|gb|ABF71531.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           cf. chlorophanum Lunke 97]
          Length = 711

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/711 (63%), Positives = 543/711 (76%), Gaps = 40/711 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 1   KRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLAT 60

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 61  GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 120

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVN
Sbjct: 121 PAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++  
Sbjct: 181 GVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDND 240

Query: 284 -------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEET 325
                   L++ K         +D+ A    E  E    GW  LV  G +EY+D EEEET
Sbjct: 241 PKSTNCGNLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEET 300

Query: 326 TMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCAS 366
            MI MT  DL     +QA     EA  D              T+THCEIHPS+ILG+CAS
Sbjct: 301 VMIVMTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICAS 360

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMGKQAMG+++T Y  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 361 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTXYDQRMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F
Sbjct: 421 RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 480

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 544
            +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +
Sbjct: 481 EKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVK 540

Query: 545 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
           RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDK +SRHGQKGT+G+TY
Sbjct: 541 RDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKXASRHGQKGTIGITY 600

Query: 605 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            Q DMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+
Sbjct: 601 RQXDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDS 660

Query: 665 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           +SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI +
Sbjct: 661 VSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 711


>gi|396941913|gb|AFN89674.1| RNA polymerase II, partial [Peterozyma toletana]
          Length = 775

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/736 (60%), Positives = 546/736 (74%), Gaps = 48/736 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPL+  LFR+
Sbjct: 40  LLPHITQEEGFETRKAFFLGYMVNRLLLCALERKEQDDRDHFGKKRLDLAGPLMANLFRI 99

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT-RAGV 119
           LFRKLT+D+  Y+Q+CV+  +D NL  A+KA TITSGLKYSLATGNWG+   A T RAGV
Sbjct: 100 LFRKLTKDIFRYMQRCVETNRDFNLTLAVKANTITSGLKYSLATGNWGEQKKAMTARAGV 159

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 160 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 219

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS +  I+ FLEEWG +  E+ +P   P+A ++FVNG WVG H DP  +   
Sbjct: 220 SLMSCISVGSPSDTIIFFLEEWGMQAVEDFTPYKDPEAVRVFVNGVWVGTHSDPTSMDNN 279

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR  +++ EV +VRDIR KE +I+TD GR  RPLFIVE       K  L +KK  I
Sbjct: 280 IRELRRGGNISPEVSIVRDIREKEFKIFTDAGRVYRPLFIVEDDQDSPNKGDLKLKKEHI 339

Query: 293 IALQQRESPED------------------GGWHDLVAKGFIEYIDTEEEETTMISMTIND 334
            +L      +                    GW  LV  G IEY+D EEEET MI+M  +D
Sbjct: 340 YSLLNSNEEDQYLKEENEDDEDDEESRRISGWSSLVKNGIIEYVDAEEEETIMIAMQTDD 399

Query: 335 LV---QARLHPEEAYAD-----------------TYTHCEIHPSLILGVCASIIPFPDHN 374
           LV   Q R   E+   +                 T+THCEIHPS+ILGV ASIIPFPDHN
Sbjct: 400 LVSNRQKRFLEEDGSTEEVDVAKRIKPTMINSSHTFTHCEIHPSMILGVAASIIPFPDHN 459

Query: 375 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 434
           QSPRNTYQSAMGKQAMG++ TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG N
Sbjct: 460 QSPRNTYQSAMGKQAMGVFATNYSVRMDTMANILYYPQKPLGTTRSMEFLRFRELPAGQN 519

Query: 435 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 494
           A+VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E + G  V  +F +P RS+T
Sbjct: 520 AVVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYSDQETRTGISVAAEFEKPQRSDT 579

Query: 495 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLR 552
           +G + G+Y+KLDDDGL  PG RVSG D+IIGKT PI  D E  GQ ++Y T+RD S+ LR
Sbjct: 580 LGFKQGTYEKLDDDGLISPGVRVSGADIIIGKTIPIQPDSEELGQRTKYHTKRDASMPLR 639

Query: 553 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
            +E G++DQV+LTTN +GL+FVKVR R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP++
Sbjct: 640 TTENGIIDQVMLTTNQEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTVGITYRHEDMPFS 699

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
            EG+ PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDATPFTD+TV+ +SK L + 
Sbjct: 700 SEGVVPDLIINPHAIPSRMTVAHLIECLLSKVSSLTGMEGDATPFTDLTVEQVSKLLREN 759

Query: 673 GYQMRGFETMYNGHTG 688
           GYQ RGFE MY+GHTG
Sbjct: 760 GYQSRGFEIMYHGHTG 775


>gi|110169452|gb|ABG53982.1| RNA polymerase II second largest subunit, partial [Entyloma
           calendulae]
          Length = 693

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/694 (64%), Positives = 543/694 (78%), Gaps = 27/694 (3%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL GLFRMLF+KLTRD+  +++KCV++ K+  +  A+K+ TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLSGLFRMLFKKLTRDIYRHLEKCVEDQKEFFINTAVKSATITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           M+CPAETPEGQACGLVKNL+LM  I+VGS + PI+EFLEE+G +   ++      ++TK+
Sbjct: 121 MVCPAETPEGQACGLVKNLSLMSLISVGSQSQPIIEFLEEFGLDQLTDMRRE-DARSTKV 179

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG W+G H+DP  LV TLR LRR+ D++TEV VV DIR KELR+YTD GR  RPLFIV
Sbjct: 180 FVNGVWLGTHQDPTGLVSTLRGLRRKDDISTEVSVVHDIREKELRLYTDAGRVMRPLFIV 239

Query: 281 EK--QRLLIKKRDIIALQQ-RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-- 335
            K  + L IK++ +  LQ   E   D GW DLV  G IEY+D EEEET MISM+I DL  
Sbjct: 240 NKDDRSLFIKRKHMNWLQHGTEDGSDFGWEDLVQCGVIEYLDAEEEETVMISMSIEDLNY 299

Query: 336 -----------------VQARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
                              ARL     Y+ DT+THCEIHP++ILG+CASIIPFPDHNQSP
Sbjct: 300 SRAYHQNTNSVRDTLSDPSARLVSLHTYSGDTWTHCEIHPAMILGICASIIPFPDHNQSP 359

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL TTRAM+HL FR+LPAG NAIV
Sbjct: 360 RNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLGTTRAMQHLKFRELPAGQNAIV 419

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D EKK G +  E F +P R  T+ +
Sbjct: 420 AILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYTDLEKKSGMVEMEVFEKPSRETTIRL 479

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
           +HG+YDKLD DGL  PGTRVSGED+IIGKT P+  D E  G  S+ +T+RD S+ L+ +E
Sbjct: 480 KHGTYDKLDADGLCAPGTRVSGEDIIIGKTVPLPGDSEELGLRSKLHTKRDASMPLKSTE 539

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
           +G+VDQVL+TTN DG++FVKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDMP+TVEG
Sbjct: 540 SGIVDQVLVTTNGDGVKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFTVEG 599

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           +TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGDATPFT +TV+ +S  L   GYQ
Sbjct: 600 VTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTSLTVEAVSNVLKGFGYQ 659

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
            RG E MYNGHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660 SRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMV 693


>gi|396941909|gb|AFN89672.1| RNA polymerase II, partial [Nakazawaea holstii]
          Length = 786

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/738 (60%), Positives = 551/738 (74%), Gaps = 46/738 (6%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPL+  LFR+
Sbjct: 50  LLPHITQEEGFETRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLMANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT-RAGV 119
           LFRKLT+D+  Y+QKCV+  +D NL  A+++ TIT+GLKYSLATGNWG+   A T RAGV
Sbjct: 110 LFRKLTKDIFRYMQKCVETNRDFNLALAVRSNTITAGLKYSLATGNWGEQKKAMTARAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ +  IL +LEEWG +  E+ +P   P+  +IFVNG WVG H DP  L   
Sbjct: 230 SLMSCISVGTPSDAILLYLEEWGMQAVEDFTPYKEPENARIFVNGVWVGTHSDPAQLNSA 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR+ D+N EV +VRDIR KE +I+TD GR  RPLFIV+       K  L ++K  I
Sbjct: 290 IRDLRRQGDINPEVSIVRDIREKEFKIFTDAGRVYRPLFIVDDDEDSEHKGELKLRKEHI 349

Query: 293 IALQQRESPED---------------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
             L +    +                 GW  LV  G IEY+D EEEET MI+M I+DL+ 
Sbjct: 350 HKLIEGADQDQIMYNEDEDEDEDENLFGWSGLVKNGVIEYVDAEEEETIMIAMQIDDLIA 409

Query: 338 A--------------------RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
           A                    R+ P  + + T+THCEIHPS+ILGV ASIIPFPDHNQSP
Sbjct: 410 AKQEQLEHDHDDEPEEEDVAKRIRPTLS-SHTFTHCEIHPSMILGVAASIIPFPDHNQSP 468

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMG++ TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIV
Sbjct: 469 RNTYQSAMGKQAMGVFATNYSVRMDTMANILYYPQKPLGTTRSMEFLRFRELPAGQNAIV 528

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AI+CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E + G  V  +F +P RS+T+G 
Sbjct: 529 AISCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYSDQETRSGMSVLAEFEKPHRSDTLGF 588

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSE 555
           + G+Y+KLDDDGL  PG RVSG D+IIGKTTPI  D E  GQ ++Y T+RD S+ LR +E
Sbjct: 589 KQGTYEKLDDDGLIAPGVRVSGADIIIGKTTPIQPDSEELGQRTKYHTKRDASMPLRTTE 648

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
            G+VDQVLLTTN +GL+FVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EG
Sbjct: 649 NGIVDQVLLTTNQEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRNEDMPFSAEG 708

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           I PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDATPFTD+TV+ +SK L + GY 
Sbjct: 709 IVPDLIINPHAIPSRMTVAHLIECLLSKVSSLTGMEGDATPFTDLTVEQVSKLLRENGYH 768

Query: 676 MRGFETMYNGHTGRRLTA 693
            RGFE MY+GHTG+++ A
Sbjct: 769 SRGFELMYHGHTGKKMMA 786


>gi|162606010|ref|XP_001713520.1| DNA-directed RNA polymerase II second largest subunit [Guillardia
            theta]
 gi|13794440|gb|AAK39815.1|AF165818_23 DNA-directed RNA polymerase II second largest subunit [Guillardia
            theta]
          Length = 1206

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/838 (52%), Positives = 590/838 (70%), Gaps = 13/838 (1%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+G G   E +K Y+FGYII++L+   +G+R  DDRDHYG KRLD  GPLL  LFR 
Sbjct: 372  FLPHIGIGQGFELRKGYFFGYIINKLISTQIGKRKMDDRDHYGYKRLDTVGPLLSQLFRQ 431

Query: 61   LFRKLTRDVRAYVQKCVDN-GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGV 119
            L  K+ ++ +  VQK +    K   L+   K+  +T+G++Y+L+TGNWG  +    R G+
Sbjct: 432  LLGKVLKEFKTNVQKKIHRLDKKFELKDFFKSNYVTTGIQYALSTGNWG-TDKQSLRTGI 490

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNRL+Y+STLSHLRR+NSP  +  K+ KPR LHNS WG +CP ETPEG +CGLVKNL
Sbjct: 491  SQVLNRLSYSSTLSHLRRVNSPSAKGNKITKPRHLHNSHWGYICPVETPEGHSCGLVKNL 550

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            AL   IT+G++   I+E LE  G E+ EE +   +  + K+FVNGCW+G H++P  L+  
Sbjct: 551  ALTAMITIGTSPLFIIEKLENLGLESLEEYNSDKLKSSFKVFVNGCWIGTHKNPFALISK 610

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
            ++  RRR   + E+ ++ D   KE++I++D GR  RPL I+ ++ ++        L    
Sbjct: 611  MKIYRRRNIFSEEISIILDDYDKEIKIFSDSGRVIRPLLIINEENIIKINNKQKYLHNLT 670

Query: 300  SPED--GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
              +     +  L+ +G +EY+D EEEET +ISM  N      LH ++     YTHCE+HP
Sbjct: 671  DDQSIYSNFQQLLEEGILEYVDPEEEETCLISMFYNFKYLKNLHTQKI---KYTHCELHP 727

Query: 358  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
            S+ILGVCAS+IPF DHNQSPRNTYQ+AMGKQA+GI V+NY FRMDT+ ++LYYPQKPLV 
Sbjct: 728  SVILGVCASLIPFCDHNQSPRNTYQAAMGKQAIGINVSNYDFRMDTMCHILYYPQKPLVC 787

Query: 418  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
            T++M  + F+  P GINAIVAIACY GYNQEDS+IM+Q SIDRG FRS FFR+Y+D EK 
Sbjct: 788  TKSMNFIKFKDFPNGINAIVAIACYGGYNQEDSIIMSQDSIDRGLFRSFFFRNYKDVEKI 847

Query: 478  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
                 KE F  P+  +  G++  SY+KLD DGL   G +V+  D+IIGKT P +  +   
Sbjct: 848  KFGGKKETFEIPNWKSCNGIKIHSYEKLDLDGLIGEGKKVNSNDIIIGKTCPTNLFDNNN 907

Query: 538  QASRY------TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 591
            +  R        + D S S+++ ETG+VD+V+L  + +G R VK+R+RSVR+PQIGDKF+
Sbjct: 908  EDLRLLGKNLKIKTDCSSSIKNFETGVVDKVILAKSDEGFRLVKIRIRSVRLPQIGDKFA 967

Query: 592  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 651
            SRHGQKG +GM Y Q +MP++ +GI+PDII+NPHAIPSRMTIG L+EC++ K  +  G E
Sbjct: 968  SRHGQKGIIGMIYRQVNMPFSEQGISPDIIMNPHAIPSRMTIGHLLECLLSKAVSMKGIE 1027

Query: 652  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
            GD TPF    +++I   L K  +   G+E +YNG  G+R+ ++IF+GPTYYQ+LKHMV+D
Sbjct: 1028 GDGTPFERQNMEDIMNFLEKNNFDKNGWEILYNGFNGKRIKSLIFMGPTYYQKLKHMVED 1087

Query: 712  KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 771
            KIHSR RGP+QILTRQP EGRSR+GGLRFGEMERDCMI+HGA+ FLK+RLFDQSD + ++
Sbjct: 1088 KIHSRARGPIQILTRQPVEGRSREGGLRFGEMERDCMISHGAAIFLKDRLFDQSDPFGIY 1147

Query: 772  VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
            VC+ CG I ++N K+N+FECR C N++ I  + IPYA KLL QELM++++  R++  E
Sbjct: 1148 VCDFCGFIVVSNKKQNNFECRNCSNRSMISFIRIPYAFKLLIQELMSLSVGVRLIPGE 1205


>gi|320172580|gb|ADW24173.1| RNA polymerase II second largest subunit [Donkioporia expansa]
          Length = 683

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/684 (65%), Positives = 537/684 (78%), Gaps = 28/684 (4%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ N+  A+K  TIT+
Sbjct: 1   DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNVSLAVKHNTITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q      +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKTMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WGM+CPAETPEGQACGLVKNL+LM  I+VG+ + P++EFLEEWG E+ EE + A  P
Sbjct: 121 NTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
             TK+FVNG W+G+HRDP  LV TLR+LRR+ D+N EV VVRDIR +ELR+YTD GR  R
Sbjct: 181 -CTKVFVNGVWMGVHRDPVKLVSTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCR 239

Query: 276 PLFIVEKQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTIN 333
           PLFIVE Q+LLI+KR I  L + ++ P     W +L+  G IE +D EEEET MISMT  
Sbjct: 240 PLFIVENQQLLIQKRHIENLVRAKDDPTITYNWDNLLKDGVIELLDAEEEETVMISMTPE 299

Query: 334 DLVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHN 374
           DL  +RL       H +E   D            T+THCEIHPS+ILGVCASIIPFPDHN
Sbjct: 300 DLENSRLQATGVDPHADEENDDPSARLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHN 359

Query: 375 QS---PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
           QS   PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPA
Sbjct: 360 QSLQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPA 419

Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
           G NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R
Sbjct: 420 GQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTR 479

Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 549
             T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S 
Sbjct: 480 DTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVST 539

Query: 550 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 609
            L+ +E G+VDQVL+TTNA+G +FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 540 PLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDM 599

Query: 610 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           P+T EGITPDII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFTD+TV+ +S+ L
Sbjct: 600 PFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVETVSQYL 659

Query: 670 HKCGYQMRGFETMYNGHTGRRLTA 693
            + GYQ RG E MY+GHTGR+L A
Sbjct: 660 RQKGYQSRGLEVMYHGHTGRKLQA 683


>gi|52699768|gb|AAU86946.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           bullata]
          Length = 727

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/730 (61%), Positives = 550/730 (75%), Gaps = 60/730 (8%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 61  ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM YI+VG+ + PI++F+ +   E  EE  P   P ATK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQRNMEVLEEYEPQRSPNATKVF 180

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG WVG+H+DP  LV T++ +RR   ++ EV +VRDIR +E +++TD GR  RPLF+++
Sbjct: 181 VNGVWVGVHQDPVHLVNTVQAVRRGHMISHEVSLVRDIRDREFKVFTDAGRVCRPLFVID 240

Query: 282 KQ-------RLLIKKRDIIALQ--------------QRESPEDG--------GWHDLVAK 312
                     L++ K  I  L+              ++E  E G        GW+ L+ +
Sbjct: 241 NDPKSLKCGSLVLTKEHINKLEDYKDLTAEMQERIREKEEAEKGVKEDGTPYGWNGLIKR 300

Query: 313 GFIEYIDTEEEETTMISMTINDL-------------------------VQARLHPEEAYA 347
           G +EY+D EEEET MI MT  DL                         V+A L+P    A
Sbjct: 301 GVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYRLPEPSDTSEALMKRVKAPLNPT---A 357

Query: 348 DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 407
            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDT+A +
Sbjct: 358 HTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYDQRMDTMANI 417

Query: 408 LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 467
           LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF
Sbjct: 418 LYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 477

Query: 468 FRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 527
           +RSY D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT
Sbjct: 478 YRSYTDQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKT 537

Query: 528 TPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
            PI+ D E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQ
Sbjct: 538 APIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQ 597

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV+
Sbjct: 598 IGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVS 657

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           +  G EGDATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL
Sbjct: 658 SLRGFEGDATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRL 717

Query: 706 KHMVDDKIHS 715
           +HMVD KI +
Sbjct: 718 RHMVDXKIXA 727


>gi|103001206|gb|ABF71497.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           fulvoviridula]
          Length = 708

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/708 (62%), Positives = 541/708 (76%), Gaps = 40/708 (5%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 121 LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 180

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181 FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 281 EKQ-------RLLIKKRDIIALQ-----------QRESPEDGGWHDLVAKGFIEYIDTEE 322
           +          L++ K  I  L+           + +  +  GW  LV  G +EY+D EE
Sbjct: 241 DNDPKSTHCGNLVLTKEHINKLEDDKDLPATTDTEEKDAKFFGWDGLVNNGVVEYVDAEE 300

Query: 323 EETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGV 363
           EET MI MT  DL  +R                     P    A T+THCEIHPS+ILG+
Sbjct: 301 EETVMIVMTPEDLEISRQIQAGYTIPETSDDLNKRVKAPMNPTAHTWTHCEIHPSMILGI 360

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 361 CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEF 420

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 421 LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 480

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 541
           E F +P RS+T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 481 EQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKL 540

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           + +RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 541 HVKRDVSTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 600

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601 ITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           VD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 661 VDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 708


>gi|300394714|gb|ADK11895.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
           olivascens]
          Length = 677

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/678 (65%), Positives = 536/678 (79%), Gaps = 25/678 (3%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           M+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+
Sbjct: 121 MVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSSP-CTKV 179

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIV
Sbjct: 180 FVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIV 239

Query: 281 EKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           E Q+L ++K+ +  L Q   +  E+  W  LV  G IE +D EEEET MISMT  DL  +
Sbjct: 240 ENQQLSLQKKHVKWLNQGQNDEGEEYKWEQLVKGGIIELLDAEEEETVMISMTPEDLENS 299

Query: 339 RLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           RL          EE Y           A T+THCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 300 RLQSAGIDPHTNEEEYDPAARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRN 359

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360 TYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+H
Sbjct: 420 LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKH 479

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G
Sbjct: 480 GTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENG 539

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 540 IVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIV 599

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++SK L++ GYQ R
Sbjct: 600 PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSKFLYQKGYQSR 659

Query: 678 GFETMYNGHTGRRLTAMI 695
           G E MY+GHTGR+L A +
Sbjct: 660 GLEVMYHGHTGRKLQAQV 677


>gi|396941841|gb|AFN89638.1| RNA polymerase II, partial [Hanseniaspora valbyensis]
          Length = 809

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/761 (58%), Positives = 562/761 (73%), Gaps = 69/761 (9%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +PH+   +  E +KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDL GPLL  LFR 
Sbjct: 50  FIPHITRKEGFENRKAFFLGYMVNRLLLCALDRKDQDDRDHFGKKRLDLGGPLLAQLFRT 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+K+TRD+   +Q+ V+ GKD  L+ AIK +TIT+GLKY+LATGNWG Q  A  +RAGV
Sbjct: 110 LFKKVTRDIFRVMQRSVEEGKDFILKTAIKHQTITAGLKYALATGNWGEQKKAMSSRAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS   PI+ +L+E+G E  E+  P  +P  +++FVNG W GIHR+PE L+  
Sbjct: 230 SLMSGISVGSDPEPIIAYLKEFGLEPLEDYVPYKLPDVSRVFVNGVWHGIHRNPERLITD 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDII 293
              LRR   +++E+ +VRDIR KE+R  TD GR  RPL++V+       + L+I+KR I+
Sbjct: 290 FINLRRSGVLSSEIAIVRDIREKEIRFLTDAGRVYRPLYVVDTNPETGNKELVIRKRHIL 349

Query: 294 ALQQRESPE---------------------DG---GWHDLVAKGFIEYIDTEEEETTMIS 329
            L Q +S E                     DG    W  LV+KG +EY+D EEEET +I+
Sbjct: 350 KLVQAQSSEYTVDEMSDDDEDGLSDGENDNDGQPWTWSTLVSKGMVEYLDAEEEETILIA 409

Query: 330 MTINDL-----------------------------------VQARLHPEEAYADTYTHCE 354
           M  +DL                                   + ++L  ++ +++T+THCE
Sbjct: 410 MQQDDLKVDEDDELIDEVDVDVDMSKDHSIEEVGEATAKVAIDSKLK-KQYHSNTFTHCE 468

Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 414
           IHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY FRMDT+A +LYYPQKP
Sbjct: 469 IHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNFRMDTMANILYYPQKP 528

Query: 415 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 474
           L TTRAMEHL FR LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFFR+Y D+
Sbjct: 529 LGTTRAMEHLKFRDLPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRAYMDQ 588

Query: 475 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 533
           EKK+G  V E F +P RS+T+ M+HG+YDKLDDDGL  PG RVSG+DVIIGKTTPI  D 
Sbjct: 589 EKKVGMTVSETFEKPTRSDTLRMKHGTYDKLDDDGLISPGVRVSGDDVIIGKTTPIKPDN 648

Query: 534 -EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 592
            E   + + +T+RD S  LR +E+G++DQVL+TTN +GLRFVKVRVR+ ++PQIGDKF+S
Sbjct: 649 EELGLRTAFHTKRDASTPLRSTESGIIDQVLITTNEEGLRFVKVRVRTTKVPQIGDKFAS 708

Query: 593 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 652
           RHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ KVAA  G+EG
Sbjct: 709 RHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAAINGQEG 768

Query: 653 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
           DA+PF DVTVD+IS  L + GYQ RGFE MYNGHTG++L A
Sbjct: 769 DASPFVDVTVDSISDLLRQAGYQSRGFEVMYNGHTGKKLMA 809


>gi|52699902|gb|AAU87012.1| DNA-dependent RNA polymerase II second largest subunit
           [Trichoglossum hirsutum]
          Length = 709

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/712 (62%), Positives = 545/712 (76%), Gaps = 48/712 (6%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLF+KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFKKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYITVGTPSDPIIEFMVQRNMEVLEEYEPQRSPNATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+HRD   LV+T++ LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++  
Sbjct: 182 GVWVGVHRDAAHLVRTVQHLRRTHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNN 241

Query: 284 -------RLLIKKRDIIALQ------------QRESPEDGGWHDLVAKGFIEYIDTEEEE 324
                   L++ K  I+ L+            QRE  +  GW  LV +G +EY+D EEEE
Sbjct: 242 PASPNRGNLVLNKEHIMKLEDDKDLDPALDPEQREG-QMFGWKGLVNQGIVEYVDAEEEE 300

Query: 325 TTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLILG 362
           T MI MT  DL                      V+A ++P    A T+THCEIHPS+ILG
Sbjct: 301 TVMIVMTPEDLEISRQLQAGYAVPEDNSDPNKRVKAPINPT---AHTWTHCEIHPSMILG 357

Query: 363 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 422
           +CASIIPFPDHNQSPRNTYQSAMGKQA G+++TNY  RMDT+A +LYYPQKPL TTR+ME
Sbjct: 358 ICASIIPFPDHNQSPRNTYQSAMGKQAXGVFLTNYDQRMDTMANILYYPQKPLATTRSME 417

Query: 423 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 482
            L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  +
Sbjct: 418 FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYSDQEKRIGMNI 477

Query: 483 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR 541
            E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS + E  GQ ++
Sbjct: 478 LETFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPESEELGQRTK 537

Query: 542 Y-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
           Y  +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+
Sbjct: 538 YHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 597

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+V
Sbjct: 598 GITYRSEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEV 657

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD K
Sbjct: 658 TVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXK 709


>gi|52699857|gb|AAU86990.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 714

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/715 (62%), Positives = 544/715 (76%), Gaps = 46/715 (6%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 121 LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 180

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDI  +E +I+TD GR  RP F+ 
Sbjct: 181 FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIXDREFKIFTDAGRVCRPXFVX 240

Query: 281 EKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 322
           +          L++ K         +D+ A+   E  E    GW  LV  G +EY+D EE
Sbjct: 241 DXDPKSTNCGNLVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEE 300

Query: 323 EETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLI 360
           EET MI MT  DL                      V+A ++P    A T+THCEIHPS+I
Sbjct: 301 EETVMIVMTPEDLEISRQIQAGYAMPETSDDPNKRVKASMNPT---AHTWTHCEIHPSMI 357

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LG+CASIIPFPDHNQSPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 358 LGICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRS 417

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G 
Sbjct: 418 MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGM 477

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 539
            V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 478 SVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 537

Query: 540 SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
           ++ + +RD S  LR +E G+ DQVLLTT A+GL+FVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 538 TKLHVKRDVSTPLRSTENGIXDQVLLTTXAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 597

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           T+G+TY QEDMP+T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 598 TIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 657

Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           +VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 658 EVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 712


>gi|300394670|gb|ADK11873.1| DNA-directed RNA polymerase II subunit two, partial [Anomoloma
           albolutescens]
          Length = 686

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/686 (64%), Positives = 537/686 (78%), Gaps = 26/686 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 2   DHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 61

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 62  YSLATGNWGDQTKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 121

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 122 WGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 181 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 240

Query: 279 IVEKQRLLIKKRDIIALQQ---RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L ++K+ +  L Q    +  E+  W  LV  G IE +D EEEET MISMT  DL
Sbjct: 241 IVENQQLALQKKHVKWLNQGYRDDDQEEFKWEQLVKSGIIELLDAEEEETVMISMTPEDL 300

Query: 336 VQARL-------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL       H  +              A T+THCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 301 ENSRLQQSGVDPHANDGDFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQS 360

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 361 PRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 420

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P+R NT+ 
Sbjct: 421 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPNRDNTLR 480

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDK+ +DGL  PGT V+GED+I+  T PI  D E  GQ +R ++RRD S  L+ +
Sbjct: 481 MKHGTYDKIREDGLIAPGTGVTGEDIILENTAPIPPDSEELGQRTRTHSRRDVSTPLKST 540

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN +G +FVKVRVRS RI QIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 541 ENGIVDQVLITTNHEGQKFVKVRVRSTRISQIGDKFASRHGQKGTIGITYRQEDMPFTAE 600

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 601 GIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 660

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPT 700
           Q RG E MY+GHTGR+L A ++LGPT
Sbjct: 661 QSRGLEVMYHGHTGRKLQAQVYLGPT 686


>gi|300394688|gb|ADK11882.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           puteana]
          Length = 686

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/686 (65%), Positives = 539/686 (78%), Gaps = 27/686 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSS-AACT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 334
           IVE Q+LL++K+ I  L Q     +  E+  W  LV  G IE +D EEEET MI+MT  D
Sbjct: 240 IVEDQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMIAMTPED 299

Query: 335 LVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 300 LENSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420 IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ 
Sbjct: 480 RMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540 TENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + G
Sbjct: 600 EGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKG 659

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGP 699
           YQ RG E MY+GHTGR+L A ++L P
Sbjct: 660 YQSRGLEVMYHGHTGRKLQAQVYLVP 685


>gi|52699780|gb|AAU86952.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           macrospora subsp. macrospora]
          Length = 706

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/706 (62%), Positives = 541/706 (76%), Gaps = 38/706 (5%)

Query: 46  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 105
           RLD AGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATG
Sbjct: 1   RLDXAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATG 60

Query: 106 NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 164
           NWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61  NWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+FVNG
Sbjct: 121 AETPEGQACGLVKNLALMCYITVGTPSQPIIDFMIQRNMEVLEEYEPQRSPNATKVFVNG 180

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ- 283
            WVG+HRDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF++    
Sbjct: 181 VWVGVHRDPAHLVSTVLALRRANAISHEVSLVRDIRDREFKIFTDAGRVCRPLFVINNDP 240

Query: 284 ------RLLIKKRDIIALQQ-RESPED--------GGWHDLVAKGFIEYIDTEEEETTMI 328
                  L++ K+DI  L+  ++ P+D         GW+ L+  G +EY+D EEEET MI
Sbjct: 241 RSKNCGNLVLTKQDIHKLEDDKDLPDDYEIDEKNPPGWNGLIKHGIVEYVDAEEEETVMI 300

Query: 329 SMT-------------------INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 369
            MT                    +DL++    P    A T+THCEIHPS+ILG+CASIIP
Sbjct: 301 VMTPEDLEISRQLQAGYNLPDTSDDLIKRVKAPMNPTAHTWTHCEIHPSMILGICASIIP 360

Query: 370 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 429
           FPDHNQSPRNTYQSAMG QAMG  +TNY  RMDT+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 361 FPDHNQSPRNTYQSAMGXQAMGXXLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFREL 420

Query: 430 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 489
           PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P
Sbjct: 421 PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKP 480

Query: 490 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 547
            RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD 
Sbjct: 481 MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDV 540

Query: 548 SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 607
           S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY QE
Sbjct: 541 STPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQE 600

Query: 608 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 667
           DMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK
Sbjct: 601 DMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSK 660

Query: 668 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
            L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 706


>gi|40644547|emb|CAD88888.1| DNA-directed RNA polymerase subunit B [Gymnosporia arbutifolia]
          Length = 459

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/459 (94%), Positives = 451/459 (98%)

Query: 256 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 315
           VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES E+  WH+L+ KGFI
Sbjct: 1   VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESLEEDAWHELIKKGFI 60

Query: 316 EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           EYIDTE+EETTMI MTINDLVQAR++PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 61  EYIDTEKEETTMIPMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 120

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 121 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 180

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR++TM
Sbjct: 181 IVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTM 240

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE 555
           GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q++AQGQ SRYTRRDHSISLRHSE
Sbjct: 241 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEDAQGQGSRYTRRDHSISLRHSE 300

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
           TGMVDQVLLTTNADGLR VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG
Sbjct: 301 TGMVDQVLLTTNADGLRSVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 360

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           ITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
Sbjct: 361 ITPDIIVNPHAIPSRMTIGQLIECLMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 420

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH
Sbjct: 421 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 459


>gi|396941843|gb|AFN89639.1| RNA polymerase II, partial [Candida abiesophila]
          Length = 785

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/736 (59%), Positives = 550/736 (74%), Gaps = 43/736 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAY+ GY+IHRLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHISQDSGHETNKAYFLGYVIHRLLLCALERKEQDDRDHFGXKRLDLAGPLLANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGV
Sbjct: 110 LFRKLSRDIYRYMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKN 
Sbjct: 170 SQVLNRYTYASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNX 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           + M  I+VG+A+ PI   LEEWG E   +  P     +T++F+NG WVG HRDP +LV+T
Sbjct: 230 SXMSCISVGTASEPITYLLEEWGLEPMSDYDPQEHKDSTRVFLNGNWVGTHRDPSLLVET 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK----------------- 282
           +++LRR   ++ EV +VRDIR KE +I+TD GR  RP F V+                  
Sbjct: 290 MKQLRRSGTISPEVSLVRDIREKEFKIFTDAGRVYRPXFXVDNDPDSETKGGLKLTKEXC 349

Query: 283 QRLLIKKRDIIALQQR-------ESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
           +++L ++ ++I   +        + PE    GW  LV  G +EY+D EEEET +I+M+  
Sbjct: 350 RKILDRELEVIEGDEEFEEDGTIKEPETRIFGWESLVTGGVVEYLDAEEEETVLIAMSSE 409

Query: 334 DLVQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           DL Q     EE   D              ++THCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 410 DLQQISXEDEEIKLDLDPAQRIKNHINAHSFTHCEIHPSMILGVAASIIPFPDHNQSPRN 469

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+Y+TNY  RMDT++ +LYYPQKPL  T++ME L FR+LPAG NAIVAI
Sbjct: 470 TYQSAMGKQAMGVYLTNYNVRMDTMSNILYYPQKPLAKTQSMEFLKFRELPAGQNAIVAI 529

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           +CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RSNT+G + 
Sbjct: 530 SCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRSGISVVEEFEKPMRSNTLGFKA 589

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
           G+Y+ LDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G
Sbjct: 590 GTYEXLDDDGLISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTENG 649

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+TVEG+ 
Sbjct: 650 XVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTVEGVV 709

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDATPFT +TVD +SK L + GYQ R
Sbjct: 710 PDLIINPHAIPSRMTVAHLIECLLSKVASLRGYEGDATPFTALTVDAVSKLLRENGYQSR 769

Query: 678 GFETMYNGHTGRRLTA 693
           GFE +YNGHTG+++ A
Sbjct: 770 GFEVIYNGHTGKKMMA 785


>gi|52699812|gb|AAU86968.1| DNA-dependent RNA polymerase II second largest subunit [Glypholecia
           scabra]
          Length = 722

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/720 (62%), Positives = 542/720 (75%), Gaps = 49/720 (6%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 61  ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMCYITVGTPSQPIIDFMIQRNMEVLEEYEPQRSPNATKVF 180

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG WVG+HRDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++
Sbjct: 181 VNGVWVGVHRDPAHLVSTVIALRRLNAISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 240

Query: 282 -------KQRLLIKKRDIIALQQRE--SPE------------------DGGWHDLVAKGF 314
                  +  L++ K  I  L+  +  +PE                    GW  LV  G 
Sbjct: 241 NDPKSHNRGSLVLTKDHIHKLEDDKELTPEQIAELAAEVDPVTGHKKTSPGWDGLVETGV 300

Query: 315 IEYIDTEEEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEI 355
           +EY+D EEEET MI MT  DL  +R                     P    A T+THCEI
Sbjct: 301 VEYVDAEEEETVMIVMTPEDLEISRQLQAGFTFPETSDDLNKRVKAPMNPTAHTWTHCEI 360

Query: 356 HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 415
           HPS+ILG+CASIIPFPDHNQSPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL
Sbjct: 361 HPSMILGICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPL 420

Query: 416 VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 475
            TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+E
Sbjct: 421 ATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQE 480

Query: 476 KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-E 534
           K++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E
Sbjct: 481 KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAE 540

Query: 535 AQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 593
             GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SR
Sbjct: 541 ELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASR 600

Query: 594 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 653
           HGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGD
Sbjct: 601 HGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGD 660

Query: 654 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           ATPFT+VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 661 ATPFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 720


>gi|94410908|gb|ABF18575.1| RNA polymerase II second largest subunit, partial [Gloiocephala
           aquatica]
          Length = 685

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/686 (63%), Positives = 535/686 (77%), Gaps = 24/686 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ N+   +K +TI +GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETRKEFNVNVGVKRQTIXNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-FTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LV T+++LRR+ D++ EV VVRDIR K L +YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVNTIKKLRRKDDISPEVSVVRDIREKXLXLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+L ++K+ +  +Q    +S E+  W  L+  G +E +D EEEET MISM+  DL  +R
Sbjct: 240 NQQLSLQKKHVKWIQSGVDDSGEEYKWEQLIKTGIVELLDAEEEETVMISMSTEDLENSR 299

Query: 340 LHPEE------------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                                    A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 300 TQSAGDVPMNEGEFDPAARLKAGTNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 359

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 360 QSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILC 419

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R +T+ M+HG+
Sbjct: 420 YSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEKKSGIQALEEFEKPQRESTLRMKHGT 479

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++
Sbjct: 480 YDKLEDDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRMHTRRDVSTPLKSTESGII 539

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVL+TTN+DG +FVKVRVR+ RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 540 DQVLITTNSDGQKFVKVRVRATRIPQTGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPD 599

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           II+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG 
Sbjct: 600 IIINPHAIPSRMTIGHLVECLLSKVATLIGHEGDATPFTDLTVESVSTFLRQKGYQSRGL 659

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRL 705
           E MY+GHTGR+L A ++LGPTYYQRL
Sbjct: 660 EVMYHGHTGRKLQAQVYLGPTYYQRL 685


>gi|113957140|gb|ABI49100.1| RNA polymerase II second largest subunit [Lobaria scrobiculata]
          Length = 714

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/717 (62%), Positives = 545/717 (76%), Gaps = 47/717 (6%)

Query: 41  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 100
           H+G  RLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+  ++ NL   +K+ T+T+GLKY
Sbjct: 1   HFGKNRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVEGNREFNLTLGVKSTTLTNGLKY 60

Query: 101 SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 159
           SLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 61  SLATGNWGGQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 120

Query: 160 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 219
           G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK
Sbjct: 121 GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATK 180

Query: 220 IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 279
           +FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+
Sbjct: 181 VFVNGVWVGVHRDPAHLVSTVQSLRRRHWISHEVSLVRDIRDREFKIFTDAGRVCRPLFV 240

Query: 280 VE-------KQRLLIKKRDIIALQQR---------ESPEDG--GWHDLVAKGFIEYIDTE 321
           ++       +  L++ K  +  L+           E  ED   GW  LV +G +EY+D E
Sbjct: 241 IDNDPKSPNRGNLVLTKEHVNKLEDDKELGPDVDPEGREDKFRGWKGLVNQGVVEYVDAE 300

Query: 322 EEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHPS 358
           EEET MI MT  DL                       V+A L+P    A T+THCEIHPS
Sbjct: 301 EEETVMIVMTPEDLEISRQIQAGYVMPEPSIDAPNKRVKAPLNPT---AHTWTHCEIHPS 357

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TT
Sbjct: 358 MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATT 417

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSS DRG FRSLF+R+Y D+EK++
Sbjct: 418 RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSTDRGLFRSLFYRAYTDQEKRI 477

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 537
           G  V E F +P R +T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  G
Sbjct: 478 GMNVVEQFEKPFRQDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEEMG 537

Query: 538 QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           Q ++ + +RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 538 QRTKAHIKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 597

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV    G EGDATP
Sbjct: 598 KGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVGTLRGLEGDATP 657

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           FTDVTVD++SK L   GYQ RGFE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKI
Sbjct: 658 FTDVTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKI 714


>gi|103001385|gb|ABF71505.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 709

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/707 (63%), Positives = 541/707 (76%), Gaps = 40/707 (5%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSL
Sbjct: 3   GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSL 62

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 63  ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 122

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+F
Sbjct: 123 VCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVF 182

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++
Sbjct: 183 VNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 242

Query: 282 KQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEE 323
                     L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEE
Sbjct: 243 NDPKSTNCGNLVLTKEHISKLEDDRDLPAIMDPEEKEAKFFGWDGLVNNGVVEYVDAEEE 302

Query: 324 ETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVC 364
           ET MI MT  DL     +QA     EA  D              T+THCEIHPS+ILG+C
Sbjct: 303 ETVMIVMTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGIC 362

Query: 365 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 424
           ASIIPFPDHNQSPRNTYQSAMGK  MG+++TNY  RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 363 ASIIPFPDHNQSPRNTYQSAMGKXXMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFL 422

Query: 425 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 484
            FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E
Sbjct: 423 KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVE 482

Query: 485 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 542
            F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ +
Sbjct: 483 QFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLH 542

Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
            +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 543 VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 602

Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 662
           TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 603 TYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 662

Query: 663 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           D++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+ MV
Sbjct: 663 DSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRXMV 709


>gi|110669596|gb|ABG81893.1| RNA polymerase II second largest subunit [Pertusaria dactylina]
          Length = 714

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/714 (61%), Positives = 547/714 (76%), Gaps = 40/714 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPL+ GLFRMLF+KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GLK
Sbjct: 1   DHFGKKRLDLAGPLMAGLFRMLFKKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM  +TVGS + PI++F+     E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMISRSMEVLEEYEPLRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNG W+G+HR+P  LV+ ++ LRR   ++ EV +VRDIR +E +I+TD GR +RPLF
Sbjct: 181 KIFVNGVWIGVHRNPTDLVRIVQGLRRNGMISHEVSLVRDIRDREFKIFTDAGRVTRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 320
           +++       K  L++ K  +  L+  ++ P D           GW  LV  G +EY+D 
Sbjct: 241 VIDNDPKSSNKGNLVLTKEIVNRLEDDKDLPADMDPDEKAAKTMGWDGLVKAGVVEYLDA 300

Query: 321 EEEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLIL 361
           EEEET MI MT  DL  +R                     P    A T+THCEIHPS+IL
Sbjct: 301 EEEETVMIVMTPEDLDISRQLQAGYQMPETTDDPNKRVKAPVNPTAHTWTHCEIHPSMIL 360

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           G+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT++ +LYYPQKPL TTR+M
Sbjct: 361 GICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMSNILYYPQKPLATTRSM 420

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  
Sbjct: 421 EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMS 480

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 540
           V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ +
Sbjct: 481 VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRT 540

Query: 541 R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           + + +RD S  LR +E G+VD+VLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT
Sbjct: 541 KLHIKRDASTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGT 600

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           +G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601 IGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 660

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           VTVD++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVDDKI
Sbjct: 661 VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPTYYQRLRHMVDDKI 714


>gi|88601058|gb|ABD46525.1| RNA polymerase II second largest subunit, partial [Sistotrema
           confluens]
          Length = 680

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/680 (64%), Positives = 535/680 (78%), Gaps = 26/680 (3%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DD DH+G KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV++ KD N+  A+K+ TIT+
Sbjct: 1   DDSDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRHLQKCVESHKDFNISIAVKSNTITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFL+EWG E+ EE + A   
Sbjct: 121 NTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEWGLESLEENANAH-G 179

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG W+G+HRD   LVKTLRRLRR+ D+++EV +VRDIR KELR+YTD GR  R
Sbjct: 180 SATKVFVNGVWMGVHRDAPNLVKTLRRLRRKDDISSEVSIVRDIREKELRLYTDAGRVCR 239

Query: 276 PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           PLFIVE Q+LL+KK  +  L  +   E   W  LV  G IE +D EEEET MI MT +DL
Sbjct: 240 PLFIVENQQLLLKKEHVNMLNDKGRNEPYKWTHLVKDGVIELLDAEEEETVMICMTPDDL 299

Query: 336 VQARLHPEEA----------------------YADTYTHCEIHPSLILGVCASIIPFPDH 373
             +R +   A                       A T+THCEIHPS+ILG+CASIIPFPDH
Sbjct: 300 ENSRTNQAVAAGYVSNAGASDHDVAARVRSTMTAHTWTHCEIHPSMILGICASIIPFPDH 359

Query: 374 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 433
           NQSPRNTYQSAMGKQAMGIY+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 360 NQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 419

Query: 434 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 493
           NA VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK+G L  E+F +P R  
Sbjct: 420 NATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYTDAEKKVGILPLEEFEKPTRDT 479

Query: 494 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISL 551
           T+ M+HG+Y+KL+DDGL  PGT V+GED+IIGKT P+  D E  GQ  R +TRRD S  L
Sbjct: 480 TLRMKHGTYEKLEDDGLIAPGTGVTGEDIIIGKTAPLPPDSEELGQRMRTHTRRDVSTPL 539

Query: 552 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 611
           + +E G+VDQVL+TTN DGL+FVK+R+R+ RIPQ+GDKF+SRHGQKGTVG+TY  EDMP+
Sbjct: 540 KSTENGIVDQVLVTTNQDGLKFVKIRIRATRIPQVGDKFASRHGQKGTVGITYRHEDMPF 599

Query: 612 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 671
           T EGITPDII+NPHAIPSRMTIG LIEC++ K+A  +G EGDATPFT++TV+++S+ L +
Sbjct: 600 TAEGITPDIIINPHAIPSRMTIGHLIECLLSKLATLIGNEGDATPFTELTVESVSQLLRQ 659

Query: 672 CGYQMRGFETMYNGHTGRRL 691
            GYQ RG E MY+GHTG++L
Sbjct: 660 HGYQSRGLEVMYHGHTGKKL 679


>gi|386801236|gb|AFJ39282.1| RNA polymerase II second largest subunit, partial [Pleurotus
           pulmonarius]
          Length = 687

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/687 (64%), Positives = 537/687 (78%), Gaps = 25/687 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR D AGPLL  LFRMLFR+LT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRSDPAGPLLSILFRMLFRQLTKDVYGYLQKCVETHKEFNLHLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +LL++K+ +  L Q   ++ E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLLLQKKHVRWLNQTVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                  +A T+TH EI  S+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HAGVDTRVNDGEYDPAARLKASTHAHTWTHAEITRSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661 VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|396941809|gb|AFN89622.1| RNA polymerase II, partial [Saccharomycopsis capsularis]
          Length = 773

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/724 (59%), Positives = 554/724 (76%), Gaps = 31/724 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  E++KA++ GY++++LL+CAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  LLPHITRDEGFESRKAFFLGYMVNKLLMCALERKEPDDRDHFGKKRLDLAGPLLAKLFRL 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+CV+  +D NL  AI+  TIT GL+YSLATGNWG Q  A   +AGV
Sbjct: 110 LFRKLSRDIFRYMQRCVETNRDFNLSLAIRPSTITDGLRYSLATGNWGEQKKAMSAKAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS++  I+E+LEEWG +  E+  P    ++T+IFVNG WVG+ +D  ++ + 
Sbjct: 230 SLMTCISVGSSSDAIVEYLEEWGMDPLEDYVPHKDTKSTRIFVNGVWVGVQKDASIIDEA 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           LR LRR+ D+N EV +VR++R KE +I+TD GR  RPLF+VE+ RL ++K+ +  L   +
Sbjct: 290 LRGLRRKGDINPEVSIVRNVREKEFKIFTDAGRVYRPLFVVEEGRLKLEKKHVSMLMDTQ 349

Query: 300 SPEDG-------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR------- 339
           +  DG              W  LV  G IEYID EEEETTMI+M+  DL  +        
Sbjct: 350 ARADGLLEEDEDDQTENFTWSSLVNNGIIEYIDAEEEETTMIAMSPEDLENSNDIMENNQ 409

Query: 340 -LHPEE-------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
            + P +       +   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 410 LVDPAQRIKIKHSSNKQTWTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 469

Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
           +++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR LPAG NAIVAI CYSGYNQEDSV
Sbjct: 470 VFLTNYGVRMDTMANILYYPQKPLATTRSMEYLKFRDLPAGQNAIVAILCYSGYNQEDSV 529

Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
           IMNQSSIDRG FRSLFFRSY D+E++ G    E+F +P RSNT+ ++ G+Y+KLD+DGL 
Sbjct: 530 IMNQSSIDRGLFRSLFFRSYMDQERREGMNFVEEFEKPLRSNTLRLKQGTYEKLDEDGLI 589

Query: 512 PPGTRVSGEDVIIGKTTPI-SQDEAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
            PG RVSG DVIIGKT PI   +E  GQ +++ T+RD S +LR +E G+VDQVLLTTN +
Sbjct: 590 APGVRVSGGDVIIGKTAPIPPNNEELGQRTKFHTKRDASTALRITENGIVDQVLLTTNQE 649

Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
           GL+F KVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+++NPHAIPS
Sbjct: 650 GLKFSKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTAEGIVPDLVINPHAIPS 709

Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
           RMT+  LIEC++ KV++  G EGDA+PFTDVTV+ IS+ L + GYQ RGFE +Y+GHTG+
Sbjct: 710 RMTVAHLIECLLSKVSSLTGLEGDASPFTDVTVEAISELLRQHGYQSRGFELLYHGHTGK 769

Query: 690 RLTA 693
           +L A
Sbjct: 770 KLMA 773


>gi|396941849|gb|AFN89642.1| RNA polymerase II, partial [Kregervanrija fluxuum]
          Length = 785

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/736 (60%), Positives = 554/736 (75%), Gaps = 43/736 (5%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            LPH+      ET KAY+ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 50  FLPHISQDSGHETNKAYFLGYVINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRI 109

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGV
Sbjct: 110 LFRKLSRDIYRYMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGV 169

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 170 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 229

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV T
Sbjct: 230 SLMSCISVGTQSEPITYLLEEWGLEPLSDYDPQEHKHATRVFLNGNWVGTHRDPGMLVDT 289

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 289
           +++LRR   ++ EV ++RDIR +E +I+TD GR  RPLFIV+       K  L + K   
Sbjct: 290 MKQLRRSGTISPEVSLIRDIREREFKIFTDAGRVYRPLFIVDDDPDSEHKGGLKLTKEHC 349

Query: 290 RDIIALQQRESPEDGG----------------WHDLVAKGFIEYIDTEEEETTMISMTIN 333
           R I+  +  E P+D                  W  LV  G +EY+D EEEET +I+M+  
Sbjct: 350 RRILDREVEEIPQDDEFDENGEPLEPIQRIFCWDSLVTNGVVEYLDAEEEETVLIAMSSE 409

Query: 334 DLV------QAR---LHPEEAY-----ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           DL       Q R   L P +       A ++THCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 410 DLTPISEQEQKRELDLDPAKRIKNHIGAHSFTHCEIHPSMILGVAASIIPFPDHNQSPRN 469

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMG+Y+TNY  RMDT+A +LYYPQKPL  T++ME L FR+LPAG NAIVAI
Sbjct: 470 TYQSAMGKQAMGVYLTNYNVRMDTMANILYYPQKPLAKTQSMEFLKFRELPAGQNAIVAI 529

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
           ACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E++ G  + E+F +P RS+T+G + 
Sbjct: 530 ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRNGISIVEEFEKPMRSSTLGFKA 589

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 557
           G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G
Sbjct: 590 GTYEKLDDDGLISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTENG 649

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVLLTTNA+GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ 
Sbjct: 650 IVDQVLLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTSEGVV 709

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PD+I+NPHAIPSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +S+ L + GYQ R
Sbjct: 710 PDLIINPHAIPSRMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSRLLRENGYQSR 769

Query: 678 GFETMYNGHTGRRLTA 693
           GFE +YNGHTG+++ A
Sbjct: 770 GFEVVYNGHTGKKMMA 785


>gi|357216637|gb|AET71052.1| RNA polymerase II second largest subunit, partial [Trametes
           elegans]
          Length = 674

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/674 (65%), Positives = 534/674 (79%), Gaps = 24/674 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + A  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHASTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+LL++K+ +  L + +E PE D  W +L+  G IE +D EEEET MI MT  DL  +R
Sbjct: 240 NQQLLLQKKHVENLVRGKEEPEFDYKWDNLIRDGVIEMLDAEEEETVMICMTPEDLENSR 299

Query: 340 LHPE------------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
           L                        A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 300 LQAAGIDPNAEGEVDPSARLKAATNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 359

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA+VAI C
Sbjct: 360 QSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAVVAILC 419

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 420 YSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGT 479

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E+G++
Sbjct: 480 YDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGII 539

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 540 DQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPD 599

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           II+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG 
Sbjct: 600 IIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGL 659

Query: 680 ETMYNGHTGRRLTA 693
           E MY+GHTGR+L A
Sbjct: 660 EVMYHGHTGRKLQA 673


>gi|110669610|gb|ABG81900.1| RNA polymerase II second largest subunit [Hypocenomyce scalaris]
          Length = 708

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/708 (62%), Positives = 542/708 (76%), Gaps = 40/708 (5%)

Query: 46  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 105
           RLD  GPLL GLFRMLF KL RDV  Y++KCV+N ++ NL   +K+ T T+GLKYSLATG
Sbjct: 1   RLDSCGPLLAGLFRMLFNKLARDVAKYLEKCVENNREFNLTLGVKSTTPTNGLKYSLATG 60

Query: 106 NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 164
           NWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61  NWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+FVNG
Sbjct: 121 AETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPQRSPNATKVFVNG 180

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--- 281
            WVG+HRDP  LV T++ LRR   ++ EV +VRDIR +E +I+TD GR  RPLF++    
Sbjct: 181 VWVGVHRDPAHLVSTVQNLRRNHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVINNDP 240

Query: 282 ----KQRLLIKKRDIIALQ-----------QRESPEDGGWHDLVAKGFIEYIDTEEEETT 326
               K  L++ K  +  L+           + ++ +  GW  LV +G +EY+D EEEET 
Sbjct: 241 KSPNKGNLVLTKEHVNRLEDDKELGADMDAEEKAAKFMGWEGLVNQGVVEYVDAEEEETV 300

Query: 327 MISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCASI 367
           MI MT  DL  +R                     P    A T+THCEIHPS+ILG+CASI
Sbjct: 301 MIVMTPEDLEISRQLQAGYVIQESTDDPNKRVKAPMNPTAHTWTHCEIHPSMILGICASI 360

Query: 368 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 427
           IPFPDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKPL TTR+ME L FR
Sbjct: 361 IPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKFR 420

Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
           +LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F 
Sbjct: 421 ELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQFE 480

Query: 488 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRR 545
           +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +R
Sbjct: 481 KPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKR 540

Query: 546 DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 605
           D S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY 
Sbjct: 541 DVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 600

Query: 606 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 665
           QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++
Sbjct: 601 QEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSV 660

Query: 666 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 SRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 708


>gi|55273995|gb|AAV48868.1| RNA polymerase II second largest subunit [Calostoma cinnabarinum]
          Length = 680

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/681 (65%), Positives = 535/681 (78%), Gaps = 26/681 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +   +AGVSQVLNR TYASTLSHLRR N+P+GREG +AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGXIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ---RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
            Q+L+++K+ I  L Q    E+ E+  W  LV  G +E +D EEEET MISMT  DL  +
Sbjct: 240 NQQLVLQKKHIQWLSQGYRDEANEEFKWEHLVKNGIVELLDAEEEETVMISMTPEDLENS 299

Query: 339 RL-----HPEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           RL     +P E                A T+THCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 300 RLQSAGINPYENDGEYDPTARLKARTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRN 359

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360 TYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+H
Sbjct: 420 MCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDMEKKSGVQQLEEFEKPTRDTTLRMKH 479

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASR-YTRRDHSISLRHSETG 557
           G+YDKL++DGL  PGT V GED+IIGKT PI  + E  GQ +R +TRRD S  L+ +E G
Sbjct: 480 GTYDKLEEDGLIAPGTGVQGEDIIIGKTAPIPPESEELGQRTRTHTRRDVSTPLKSTEKG 539

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
            +DQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI+
Sbjct: 540 TIDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIS 599

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L + GYQ R
Sbjct: 600 PDIIINPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTELTVESVSSFLRQKGYQSR 659

Query: 678 GFETMYNGHTGRRLTAMIFLG 698
           G E MY+GHTGR+L A I+LG
Sbjct: 660 GLEVMYHGHTGRKLQAQIYLG 680


>gi|103001677|gb|ABF71517.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 704

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/704 (62%), Positives = 539/704 (76%), Gaps = 40/704 (5%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 121 LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 180

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181 FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 281 EKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 322
           +          L++ K         +D+ A+   E  E    GW  LV  G +EY+D EE
Sbjct: 241 DNDPKSTNCGNLVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEE 300

Query: 323 EETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGV 363
           EET MI MT  DL  +R                     P    A T+THCEIHPS+ILG+
Sbjct: 301 EETVMIVMTPEDLEISRQIQAGYAMPETSDDPNKRVKAPMNPTAHTWTHCEIHPSMILGI 360

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 361 CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEF 420

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 421 LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 480

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 541
           E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 481 EQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKL 540

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           + +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 541 HVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 600

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP+T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601 ITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           VD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL
Sbjct: 661 VDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRL 704


>gi|119644004|gb|ABL85600.1| RNA polymerase II second largest subunit [Lecidea fuscoatra]
          Length = 707

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/710 (62%), Positives = 546/710 (76%), Gaps = 47/710 (6%)

Query: 48  DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 107
           DLAGPLL GLFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GLKYSLATGNW
Sbjct: 1   DLAGPLLAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLKYSLATGNW 60

Query: 108 G-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAE 166
           G Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAE
Sbjct: 61  GDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAE 120

Query: 167 TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 226
           TPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+FVNG W
Sbjct: 121 TPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATKVFVNGVW 180

Query: 227 VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE----- 281
           VG+HRDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++     
Sbjct: 181 VGVHRDPAHLVSTVLSLRRHHMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKS 240

Query: 282 --KQRLLIKKRDIIALQQ-RE-----SPEDG-----GWHDLVAKGFIEYIDTEEEETTMI 328
             +  L++ K  +  L+  RE      PED      GW  LV +G +EY+D EEEET MI
Sbjct: 241 SNRGNLVLTKEHVQKLEDDREIIASTDPEDRVAKFMGWEGLVHQGVVEYVDAEEEETVMI 300

Query: 329 SMTINDL-----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCA 365
            MT  DL                       V+A L+P    A T+THCEIHPS+ILG+CA
Sbjct: 301 VMTPEDLEISRQIQAGFVLPDPSIDDPNKRVKAPLNPT---AHTWTHCEIHPSMILGICA 357

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 358 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLK 417

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E+
Sbjct: 418 FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEE 477

Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 543
           F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  G  ++ + 
Sbjct: 478 FEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGLRTKLHM 537

Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
           +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 538 KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 597

Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
           Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD
Sbjct: 598 YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVD 657

Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           ++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 658 SVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 707


>gi|103001922|gb|ABF71527.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           flavum]
          Length = 701

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/701 (63%), Positives = 538/701 (76%), Gaps = 40/701 (5%)

Query: 51  GPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-Q 109
           GPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSLATGNWG Q
Sbjct: 1   GPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSLATGNWGDQ 60

Query: 110 ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 169
             AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPE
Sbjct: 61  KKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 120

Query: 170 GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 229
           GQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+
Sbjct: 121 GQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGV 180

Query: 230 HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------ 283
           HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++        
Sbjct: 181 HRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNC 240

Query: 284 -RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMT 331
             L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEEET MI MT
Sbjct: 241 GNLVLTKEHINKLEDDRDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMT 300

Query: 332 INDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPD 372
             DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 301 PEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPD 360

Query: 373 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 432
           HNQSPRNTYQS MGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG
Sbjct: 361 HNQSPRNTYQSXMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAG 420

Query: 433 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 492
            NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS
Sbjct: 421 QNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRS 480

Query: 493 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 550
           +T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ + +RD S  
Sbjct: 481 DTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLHVKRDVSTP 540

Query: 551 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 610
           LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 541 LRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMP 600

Query: 611 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 670
           +T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L 
Sbjct: 601 FTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLR 660

Query: 671 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
           + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDD
Sbjct: 661 EHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDD 701


>gi|110704328|gb|ABG88064.1| RNA polymerase II second largest subunit [Microbotryum violaceum]
          Length = 699

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/700 (63%), Positives = 537/700 (76%), Gaps = 28/700 (4%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV+  K  NL  A+++ TIT+GLKYS
Sbjct: 1   FGAKRLDLAGPLLAALFRMLFRKLTKDVYRHLQKCVETQKSFNLNTAVRSNTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  A   +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKAMSAKAGVSQVLNRYTFASTLSHLRRCNAPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           M+CPAETPEGQACGLVKNLALM YI+VGS + PI+EFLEEWG EN EE S + + + TK+
Sbjct: 121 MVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGMENLEEFS-SEMSKGTKV 179

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG W G+HRDP  LV+T++RLRR  D+  EV VVRD+R +ELR++TD GR  RPLFIV
Sbjct: 180 FVNGVWQGVHRDPAHLVQTIKRLRRCGDIAYEVSVVRDVRERELRLHTDAGRVCRPLFIV 239

Query: 281 EKQRLLIKKRDIIALQQRES---PEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           E  RL++ +  I ALQ  +S   P++    W DL+  G +EY+D EEEET MI MT  DL
Sbjct: 240 EDHRLVLTRHHIDALQNEDSEDRPDEKRLKWTDLIETGVVEYVDAEEEETVMICMTPEDL 299

Query: 336 VQARLHPEEAY-------------------ADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL  E                        T+THCEIHPS+ILG+CASIIP      S
Sbjct: 300 ETSRLFQETGQIQVDTFDPSATVKGSMGVNTHTWTHCEIHPSMILGICASIIPXXXXXXS 359

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMG+++TNYQ RMDT+A VLYYPQKPL TTR+ME+LHFR+LPAG NAI
Sbjct: 360 PRNTYQSAMGKQAMGVFLTNYQVRMDTMANVLYYPQKPLATTRSMEYLHFRELPAGQNAI 419

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVI+NQSSIDRG FRS ++RSY D+EKK G +  E+F +P R  T+ 
Sbjct: 420 VAIMCYSGYNQEDSVILNQSSIDRGLFRSFYYRSYMDQEKKSGAIQMEEFEKPTRDTTLR 479

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHS 554
           ++HG+Y+KL+ DG+   G RV+GED+IIGKT P+  D E  GQ    +T+RD S  L+ +
Sbjct: 480 LKHGTYEKLEADGIIGLGERVAGEDIIIGKTAPLPPDSEELGQRLKNHTKRDVSTPLKST 539

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN DGL+FVK+RVRS RIP+IGDKF+SRHGQKGT+G+TY  EDMP++ E
Sbjct: 540 ENGIVDQVLVTTNQDGLKFVKIRVRSTRIPEIGDKFASRHGQKGTIGITYRHEDMPFSAE 599

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           G  PDII+NPHAIPSRMTIG L+EC++ KV+   G EGDATPF++VTV+ IS  L + GY
Sbjct: 600 GTIPDIIINPHAIPSRMTIGHLVECLLSKVSTISGNEGDATPFSEVTVEAISTLLKEMGY 659

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
             RG E MYNGHTGR+L A ++LGPTYYQRLKHMV+DKIH
Sbjct: 660 HSRGLEVMYNGHTGRKLQAQVYLGPTYYQRLKHMVNDKIH 699


>gi|83415495|gb|ABC17955.1| RNA polymerase II second largest subunit precursor, partial
           [Spiromyces aspiralis]
          Length = 1058

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/696 (63%), Positives = 538/696 (77%), Gaps = 26/696 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KR+DLAGPLL  LFR LFRK+T+DV  Y+QKC+DN ++     AIK+ TIT+GLKYSLAT
Sbjct: 2   KRMDLAGPLLAMLFRNLFRKMTKDVTRYMQKCIDNDREFRPNIAIKSTTITTGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGIVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM ++T+  +A PI +FL +WG EN EE+    I  ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMAHVTISCSAQPIHDFLNDWGMENLEELQVTSIADATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+GIHR+   LV  LR++RR   ++ ++ +VRDIR KELRIYTD GR  RPLF+VE  
Sbjct: 182 GVWLGIHREANKLVPQLRQMRRETSLSFDISIVRDIREKELRIYTDEGRVCRPLFVVEDL 241

Query: 284 RLLIKK----RDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
           RL +      R I   +     E  GW  L++ G +EY+D EEEET MI MT ++L ++ 
Sbjct: 242 RLKVTNDHINRLIELNEIGGGEEGEGWQMLISDGVVEYLDAEEEETAMICMTPDELRESY 301

Query: 340 LH-------PEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
            +       P E             Y +T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 302 EYHQTGVEPPMEVDPSFRIRSRRNIYINTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 361

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+ +TNYQ RMDTL+ VLYYPQKPL  TRAM++L FRQLPAG NAIVAI 
Sbjct: 362 YQSAMGKQAMGVMLTNYQLRMDTLSNVLYYPQKPLAITRAMDYLKFRQLPAGQNAIVAIL 421

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDS+IMNQSSIDRG FRSLFFR+Y+DEE + G+     F +P R  T+ ++HG
Sbjct: 422 CYSGYNQEDSIIMNQSSIDRGLFRSLFFRTYQDEENREGSAHVGRFEKPTRETTLRLKHG 481

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHSETGM 558
           +Y+KLD+DGL  PGTRV G+D+IIGKTTPI  D  + GQ ++ +T+ D S  LR +E G+
Sbjct: 482 TYEKLDEDGLVAPGTRVVGDDIIIGKTTPIPADSLELGQRTKNHTKLDASKPLRSTEHGI 541

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VD+V+LTTNADG+RFVKVRVRS R+PQIGDKF+SRHGQKGTVGMTY  EDMP+T EGI P
Sbjct: 542 VDRVMLTTNADGIRFVKVRVRSTRVPQIGDKFASRHGQKGTVGMTYRTEDMPFTAEGIVP 601

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTIG LIEC++ K++  +G++GDATPFTDVTV+ IS+ LH  GY  RG
Sbjct: 602 DLIINPHAIPSRMTIGHLIECLLSKLSTLLGQDGDATPFTDVTVEAISRELHSRGYHPRG 661

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           FE MYNGHTGR+L A +FLGPTY QRLKHMVDDKIH
Sbjct: 662 FEVMYNGHTGRKLAAQVFLGPTYXQRLKHMVDDKIH 697


>gi|110169467|gb|ABG53986.1| RNA polymerase II second largest subunit, partial [Exobasidium
           gracile]
          Length = 705

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/707 (63%), Positives = 547/707 (77%), Gaps = 28/707 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL GLFRMLF+KLTRD+  ++Q+CV+  K+  LQ A+K+ TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLSGLFRMLFKKLTRDIYRHLQRCVEESKEFTLQAAVKSSTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q      +AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKFMSAKAGVSQVLNRYTYASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VGS + PI+EFLEE+G ++  ++  A   +ATK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSMISVGSPSGPIIEFLEEYGLDSLVDMQIADA-KATKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV- 280
           VNG W+G    P  LV+TLR LRR+ D++ EV VV DIR KELR+YTD GR  RPLFIV 
Sbjct: 180 VNGVWMGTCDTPTGLVETLRDLRRKDDISIEVSVVHDIREKELRLYTDAGRVQRPLFIVN 239

Query: 281 -EKQRLLIKKRDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
            E + L +K + +  ++ +E P+    GW  LV  G IE +D EEEET MI M+  DL  
Sbjct: 240 PEDKTLYVKPKHVNWIETQERPDGSPYGWSQLVRDGLIELLDAEEEETVMICMSPQDLES 299

Query: 338 ------------------ARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
                             ARL P + YA  T+THCEIHP++ILGVCASIIPFP   QSPR
Sbjct: 300 SRMYNENPDSIKLSGDPTARLVPVQTYAPSTWTHCEIHPAMILGVCASIIPFPP-XQSPR 358

Query: 379 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
           N YQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL TT +M +L FR+LPAG NAIVA
Sbjct: 359 NVYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLATTHSMHYLKFRELPAGQNAIVA 418

Query: 439 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
           I CYSGYNQEDSVIMNQSSIDRG FRSL++R++ D EKK G ++ E+F +P R   + ++
Sbjct: 419 ILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTHMDMEKKTGMILLEEFEKPSRETAVRLK 478

Query: 499 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSET 556
           HG+YDK+D DG   PGTRVSGED+IIGKTTP+  D E  G  S+ +T++D S  L+ +E 
Sbjct: 479 HGTYDKIDADGFCAPGTRVSGEDIIIGKTTPLPPDSEELGLRSKLHTKKDVSTPLKSTEN 538

Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
           G+VDQVL++TNA+G +FVKVR+RS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T+EG+
Sbjct: 539 GIVDQVLVSTNAEGNKFVKVRIRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTIEGV 598

Query: 617 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
           TPDII+NPHAIPSRMTIG L+EC++ KV A  G+EGDATPFTD+TV+ +S  L + GYQ 
Sbjct: 599 TPDIIINPHAIPSRMTIGHLVECLLSKVGALSGQEGDATPFTDLTVEAVSHQLRQHGYQS 658

Query: 677 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 723
           RG E MYNGHTG++L A ++LGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 659 RGLEVMYNGHTGKKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQI 705


>gi|88601070|gb|ABD46531.1| RNA polymerase II second largest subunit, partial [Punctularia
           strigosozonata]
          Length = 701

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/702 (63%), Positives = 539/702 (76%), Gaps = 42/702 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QK ++ GK  NL  A+K  TIT+
Sbjct: 1   DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKSIETGKQFNLSLAVKHNTITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P
Sbjct: 121 NTHWGMVCPAETPEGQACGLVKNLSLMATISVGSISAPVIEFLEEWGLESLEENAHSSTP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
             TK+FVNG W+G+HRDP  LVKT+++LRR+ +++ E  VVRDIR +ELRI TD GR  R
Sbjct: 181 -CTKVFVNGVWMGVHRDPLNLVKTIKKLRRKDNISPETSVVRDIRERELRISTDAGRVCR 239

Query: 276 PLFIVEKQRLLIKKRDIIALQQRESP---EDGG----------------WHDLVAKGFIE 316
           PLFIVE Q+L++KK  I  L +  +    +D G                + +LV +G IE
Sbjct: 240 PLFIVENQQLVLKKSHIEKLHKHNTEPVLDDAGAPTFDENGKQRFFQYQFDELVKEGVIE 299

Query: 317 YIDTEEEETTMISMTINDLVQARLH-----PEE--------------AYADTYTHCEIHP 357
           Y+D EEEET MI MT  DL  ARL      P +                A  +THCEIHP
Sbjct: 300 YLDAEEEETVMICMTPEDLENARLKQQGHDPSQDDPDFDPAARIKTGTQAHLWTHCEIHP 359

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL T
Sbjct: 360 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLAT 419

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS++FRSY D EKK
Sbjct: 420 TRSMEYLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYFRSYMDMEKK 479

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
            G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  
Sbjct: 480 SGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEEL 539

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ +R +TRRD S  L+ +E G VDQVL+TTN++G +FVKVR+RS RIPQIGDKF+SRHG
Sbjct: 540 GQRTRGHTRRDVSTPLKSTEQGTVDQVLITTNSEGQKFVKVRIRSTRIPQIGDKFASRHG 599

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDAT
Sbjct: 600 QKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDAT 659

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 697
           PFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A I+L
Sbjct: 660 PFTDLTVESVSQFLRQRGYQSRGLEVMYHGHTGRKLQAQIYL 701


>gi|52699774|gb|AAU86949.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           complanata]
          Length = 730

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/728 (61%), Positives = 545/728 (74%), Gaps = 54/728 (7%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YI+VG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQRNMEVLEEYEPQRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+H DP  LV T++ +RR   ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHSDPVHLVNTVQAVRRGHMISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVEKQ-------RLLIKKRDIIALQQRE--SPE-----------------DG---GWHDL 309
           +++          L++ K  I  L+  +  S E                 DG   GW+ L
Sbjct: 241 VIDNDPKSPRCGNLVLTKEHINKLEDYKDLSAEMQEKIREKEEVEKEVKEDGTPYGWNGL 300

Query: 310 VAKGFIEYIDTEEEETTMISMTINDLVQARL----------------------HPEEAYA 347
           + +G +EY+D EEEET MI MT  DL  +R                        P    A
Sbjct: 301 IKRGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYVLPEPSNTSEALMKRVKAPMNPTA 360

Query: 348 DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 407
            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG QAMG    NY+ RMDT+A +
Sbjct: 361 HTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGXQAMGXXXXNYEQRMDTMANI 420

Query: 408 LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 467
           LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF
Sbjct: 421 LYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 480

Query: 468 FRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 527
           +RSY D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT
Sbjct: 481 YRSYTDQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKT 540

Query: 528 TPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 585
            PI+ D E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQ
Sbjct: 541 APIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQ 600

Query: 586 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 645
           IGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV+
Sbjct: 601 IGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVS 660

Query: 646 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
           +  G EGDATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL
Sbjct: 661 SLRGFEGDATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRL 720

Query: 706 KHMVDDKI 713
           +HMVDDKI
Sbjct: 721 RHMVDDKI 728


>gi|88976107|gb|ABD59032.1| RNA polymerase II second largest subunit, partial [Cantharocybe
           gruberi]
          Length = 675

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/675 (65%), Positives = 534/675 (79%), Gaps = 25/675 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q
Sbjct: 181 GVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQ 240

Query: 284 RLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL- 340
           +L ++K+ I  L Q   +  ED  W  LV  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLALQKKHIKWLNQGYNDEGEDFKWEQLVKGGIIELLDAEEEETVMISMTPEDLENSRLQ 300

Query: 341 ------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                 H  +             +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 HQGVDPHANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPLRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VD
Sbjct: 481 DKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+
Sbjct: 541 QVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDL 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMI 695
            M++GHTGR+L A +
Sbjct: 661 VMFHGHTGRKLQAQV 675


>gi|55140709|gb|AAQ01541.2| RNA polymerase II second largest subunit [Crepidotus cf. applanatus
           PBM 717]
          Length = 688

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/688 (64%), Positives = 538/688 (78%), Gaps = 26/688 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  KD N+ FA+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKDFNVAFAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+PIGREGK+AKPRQLHN       
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPIGREGKIAKPRQLHNXXXXXXX 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
            AETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122 XAETPEGQACGLVKNLALMSCISVGSFSGPVIEFLEEWGLESLEENAHSSTP-FTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRD   LVKTL+RLRRR D++TEV VVRDIR +E+R+YTD GR  RPLFIVE Q
Sbjct: 181 GVWIGVHRDAANLVKTLKRLRRRDDISTEVSVVRDIREREMRVYTDAGRVCRPLFIVEDQ 240

Query: 284 RLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +L+++K+ I  L     +  ++  W  LV  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLVLQKKHIRWLNNGVDDEGQEFKWEQLVKTGVIELLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -----PEE---------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
                P+                 +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 301 QRGIDPQANNDGEYDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 360

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMG+QAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 361 QSAMGEQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILC 420

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 421 YSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGT 480

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+V
Sbjct: 481 YDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIV 540

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 541 DQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPD 600

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           +++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG 
Sbjct: 601 LVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGL 660

Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           E MY+GHTG++L A ++LGPTYYQRLKH
Sbjct: 661 EIMYHGHTGKKLQAQVYLGPTYYQRLKH 688


>gi|82504135|gb|ABB80490.1| RNA polymerase II subunit [Symbiotaphrina kochii]
          Length = 714

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/712 (62%), Positives = 545/712 (76%), Gaps = 41/712 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH G KR DLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLK
Sbjct: 2   DHXGKKRXDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLK 61

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  A  ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 62  YSLATGNWGDQKKAMSSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 121

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 122 WGLVCPAETPEGQACGLVKNLALMCYITVGTPSDPIVDFMIQRNMEVLEEYEPQRSPNAT 181

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV+ ++ LRR+  ++ EV +VR+IR +E +I+TD GR  RPLF
Sbjct: 182 KVFVNGVWVGVHRDPSHLVRDVQDLRRKHLISHEVSLVREIRDREFKIFTDAGRVCRPLF 241

Query: 279 IVEKQ-------RLLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDT 320
           ++           L++ K  I  L+  +      SPE+      GW  LV  G +EY+D 
Sbjct: 242 VINNNPRSDQCGTLVLTKEHIARLEDDKDLDPDLSPEEREERLFGWQGLVNNGIVEYMDA 301

Query: 321 EEEETTMISMTINDL-----VQA--RLHPEEA-------------YADTYTHCEIHPSLI 360
           EEEET MI MT  DL     +QA  R+  EE               A ++THCEIHPS+I
Sbjct: 302 EEEETAMIVMTPEDLEISRQMQAGYRVEEEETEDLNKRVKAPLKPTAHSWTHCEIHPSMI 361

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LG+CASIIPFPDHNQSPRNTYQSAMG QAMG+Y+TN+  RMDT+A +LYYPQKPL TTR+
Sbjct: 362 LGICASIIPFPDHNQSPRNTYQSAMGXQAMGVYLTNFDSRMDTMANILYYPQKPLATTRS 421

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G 
Sbjct: 422 MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGM 481

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 539
            V E F +P RS+T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 482 SVVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 541

Query: 540 SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
           ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 542 TKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 601

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           T+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 602 TIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 661

Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           +VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD
Sbjct: 662 EVTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLRAQVFLGPTYYQRLRHMVD 713


>gi|113957834|gb|ABI49125.1| RNA polymerase II second largest subunit [Megalospora tuberculosa]
          Length = 718

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/718 (61%), Positives = 543/718 (75%), Gaps = 41/718 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFR LF KL++D+  Y+QKCV++ ++ NL   +K  T+TS
Sbjct: 1   DDRDHFGKKRLDLAGPLLATLFRTLFSKLSKDIYKYLQKCVESNREFNLTLGVKQNTLTS 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGEQKKAAQSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YI+VGS A PI+++L + G E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYISVGSPAEPIVDYLIQRGMEILEEYEPTRSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG WVG+H DP +LV  ++ LRR   +  E  +VRDIR +E +I+TD GR  R
Sbjct: 181 NATKVFVNGVWVGVHHDPALLVSNVQELRRTNIIPHEASLVRDIRDREFKIFTDAGRVCR 240

Query: 276 PLFIVEK-----------------QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEY 317
           PLF+V                   Q++  ++  +IA+   E      GW  LV    I+Y
Sbjct: 241 PLFVVNNDFKSDNAGSLVLTKEMVQKVEDERDVVIAMDPEERAGTSIGWQGLVYARAIQY 300

Query: 318 IDTEEEETTMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHP 357
           +D EEEET MI MT  DL     VQA     +  AD               T+THCEIHP
Sbjct: 301 VDAEEEETIMIVMTPEDLEISRQVQAGYDAPQPSADAPNSRVKAAVNPTAHTWTHCEIHP 360

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL T
Sbjct: 361 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLAT 420

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y + EK+
Sbjct: 421 TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVNTEKR 480

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +G  V E F +P RS T+ ++HG+YDKLD+DGL  PG RVSG+DVIIGKTTPI+ D E  
Sbjct: 481 VGMQVLESFEKPLRSETLKLKHGTYDKLDNDGLVAPGVRVSGDDVIIGKTTPIAPDAEEM 540

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541 GQRTKAHIKKDASTPLRSTENGIVDRVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHG 600

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PDII+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 601 QKGTIGITYRQEDMPFTSEGMVPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDAT 660

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           PFT++TVD++S  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 PFTEITVDSVSNLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718


>gi|45545323|gb|AAS67509.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cryptococcus neoformans]
          Length = 1114

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/740 (60%), Positives = 550/740 (74%), Gaps = 37/740 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPHV T +  E+KKAY+ GY++HRL + ALGRR  DDRDH+GNKRLDLAGPL+  +F +
Sbjct: 379  FLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRRELDDRDHFGNKRLDLAGPLMAEMFNV 438

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
            +F KL  D+  Y++KCV+  K+  L  AI+  TIT GLKY+LATGNWG+ +   TRAGVS
Sbjct: 439  VFGKLREDMYRYLKKCVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRD--NTRAGVS 496

Query: 121  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
            QVLN  T+ STLSHLRR N+PIGR+ K AKPRQLH++ WGM+CPAETPEG ACGLVKNLA
Sbjct: 497  QVLNSYTFTSTLSHLRRTNTPIGRDSKAAKPRQLHDTHWGMVCPAETPEGSACGLVKNLA 556

Query: 181  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
            LM YI+VGS + P++EFLEEWG E+  E   A  P ATK+FVNG W+GIHRD   L   L
Sbjct: 557  LMSYISVGSYSAPVMEFLEEWGLEDLSEYQDA--PTATKVFVNGVWMGIHRDAPTLHNNL 614

Query: 241  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQR 298
             ++RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L +K+  I  + Q 
Sbjct: 615  LQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQM 674

Query: 299  --ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------------HPE 343
              E    G W  L+++G +EY+D  EEET +I+MT  DLV AR              H  
Sbjct: 675  ADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNL 734

Query: 344  EAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 392
            E++           +  YTH EIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 735  ESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 794

Query: 393  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 452
             +TNYQ RMDT+  VLYYPQKPL TTR+ME+L F +LPAG NAIVAI CYSGYNQEDSVI
Sbjct: 795  CLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVI 854

Query: 453  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDG 509
            MNQSSIDRG FRSL+FRSY D EK  G +  E   +PDR+ T+ M+HG+   Y KLD DG
Sbjct: 855  MNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDG 914

Query: 510  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTN 567
            L  PGT V+G+D++IGKT P+ +D E  GQ ++ +T+RD S  L+ +E G+VDQV+L+TN
Sbjct: 915  LVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTN 974

Query: 568  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
             +G  FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PDII+NPHAI
Sbjct: 975  GEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAI 1034

Query: 628  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
            PSRMTIG L+EC++ KV+   G EGDATPFT++TV+ +SK L   GYQ RGFE +Y+GHT
Sbjct: 1035 PSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQSRGFELLYHGHT 1094

Query: 688  GRRLTAMIFLGPTYYQRLKH 707
            GR+L A ++ GPTYYQRLKH
Sbjct: 1095 GRKLQAQVYFGPTYYQRLKH 1114


>gi|52699851|gb|AAU86987.1| DNA-dependent RNA polymerase II second largest subunit [Petractis
           luetkemuelleri]
          Length = 716

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/716 (62%), Positives = 546/716 (76%), Gaps = 40/716 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D +G KR DLAGPL+ GLFRMLF KL +DV  Y++KCVDNGK+ NL   +K+ T+T+GLK
Sbjct: 1   DXFGKKRXDLAGPLMAGLFRMLFYKLFKDVNQYLKKCVDNGKEFNLTLGVKSTTLTNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVGS + PI+EF+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQRNMEVLEEYEPTRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T++ LRRR  +++EV ++RDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPAHLVNTVQSLRRRNMISSEVSLIRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 320
           +++       K  L++ K  +  L+  RE P D           GW  LVA G +E++D 
Sbjct: 241 VIDNDNKSPNKGSLVLTKELVNKLEDDRELPPDMDPDEKKLKYFGWAGLVASGAVEFLDA 300

Query: 321 EEEETTMISMTINDL-----VQA-------------RLH-PEEAYADTYTHCEIHPSLIL 361
           EEEET MI+MT  DL     VQA             R+  P  A   T+THCEIHPS+IL
Sbjct: 301 EEEETVMIAMTPEDLEISRQVQAGYALPEPSSDPNARVKAPVSAAQQTWTHCEIHPSMIL 360

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           G+CASIIPFPDHNQSPRNTYQSAMGKQA     TN+  RMDT+A +LYYPQKPL TTR+M
Sbjct: 361 GICASIIPFPDHNQSPRNTYQSAMGKQAXXXXXTNFDERMDTMANILYYPQKPLATTRSM 420

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSL++R Y ++EK++G  
Sbjct: 421 EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLYYRVYVEQEKRIGMS 480

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 540
           + E F +P RS T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ +
Sbjct: 481 LVEQFEKPLRSETLRVKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTAPIAPDAEELGQRT 540

Query: 541 R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           + +T+RD S  LR +E G+VD+VLLTTNA+GL+FVKVR+R+ ++P IGDKF+SRHGQKGT
Sbjct: 541 KLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRMRTTKVPXIGDKFASRHGQKGT 600

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           +G+TY QEDMP++ EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601 IGITYRQEDMPFSAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 660

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMV  KIH+
Sbjct: 661 VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFFGPTYYQRLRHMVXXKIHA 716


>gi|52699786|gb|AAU86955.1| DNA-dependent RNA polymerase II second largest subunit [Baeomyces
           placophyllus]
          Length = 717

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/715 (61%), Positives = 543/715 (75%), Gaps = 41/715 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH   KRLDLAGPL+ GLFRMLF KL +DV  Y++KCV++ ++ NL   +K+ T+T+GLK
Sbjct: 1   DHXXXKRLDLAGPLMAGLFRMLFNKLVKDVYNYLKKCVESNREFNLSLGVKSTTLTNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNL+LM YITVG+   PI++F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLSLMCYITVGTPNEPIIDFMIQRSMEVLEEYEPTRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VR+IR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPAHLVSTVQSLRRRSLISHEVSLVREIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDT 320
           ++E       K  L++ K  +  L+  ++ P D           GW  LV  G +E++D 
Sbjct: 241 VIENDAKKANKGSLVLTKELVNRLEDDKDIPTDLDPDERAARYFGWDGLVKSGAVEFLDA 300

Query: 321 EEEETTMISMTINDLVQARLH--------------------PEEAYADTYTHCEIHPSLI 360
           EEEET MI MT  DL  +R                      P +A + T+THCEIHPS+I
Sbjct: 301 EEEETVMIVMTPEDLEISRQLQMGYTMPSSSNVDPNSRIKVPIKASSHTWTHCEIHPSMI 360

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LG+CASIIPFPDHNQSPRNTYQSAMG QAMG+ +TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 361 LGICASIIPFPDHNQSPRNTYQSAMGXQAMGVXLTNYDERMDTMANILYYPQKPLATTRS 420

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+EK++G 
Sbjct: 421 MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYTDQEKRIGM 480

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 539
            V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 481 SVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEEMGQR 540

Query: 540 SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
           ++ + +RD S  LR +E G+VD+VLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 541 TKLHIKRDVSTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 600

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           T+G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 601 TIGITYRMEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 660

Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           +VTVD+IS  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 661 EVTVDSISNLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 715


>gi|110704333|gb|ABG88065.1| RNA polymerase II second largest subunit [Microstroma juglandis]
          Length = 716

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/717 (61%), Positives = 545/717 (76%), Gaps = 47/717 (6%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDL GPLL GLFRMLFRKLTRD+  ++QKCV+  ++ +L  A+K+ TIT+GL+
Sbjct: 1   DHFGKKRLDLGGPLLAGLFRMLFRKLTRDIYRHLQKCVEEQREFHLTAAVKSSTITNGLR 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P+ +FL+E+G +N  ++  +   +AT
Sbjct: 121 WGMVCPAETPEGQACGLVKNLSLMSLISVGSPSAPLHQFLDEFGLDNLVDMQVSAA-KAT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W G H +P  LV+TLR LRR+ D+ TEV VV D+R KELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWAGTHNEPSALVETLRDLRRKDDITTEVSVVHDVREKELRLYTDSGRVLRPLF 239

Query: 279 IVEKQ--RLLIKKRDIIALQQRESP----------------EDGGWHDLVAKGFIEYIDT 320
           IV+ +  RLLI +  I  L   E P                E   W  LVA+G IEY+D 
Sbjct: 240 IVDPKSMRLLITREHIQWLNADEKPGGMLDETNMEPDEDERERFQWSQLVAEGVIEYLDA 299

Query: 321 EEEETTMISMTINDLVQ------------------------ARLHPEEAY-ADTYTHCEI 355
           +EEET MISM+  DL +                        ARL     Y   T+THCEI
Sbjct: 300 DEEETVMISMSPQDLAKSRRLQRTGLITGEANGLDGLPDASARLVSSRYYEPSTWTHCEI 359

Query: 356 HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 415
           HP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL
Sbjct: 360 HPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPL 419

Query: 416 VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 475
            TTR+MEHL+FR+LPAG NAIVAI CYSGYNQEDSVI+NQSSIDRG FRSL++R+Y D E
Sbjct: 420 ATTRSMEHLNFRELPAGQNAIVAILCYSGYNQEDSVILNQSSIDRGLFRSLYYRTYTDFE 479

Query: 476 KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-E 534
           KK+G  ++E+F +P R   + ++HG+YDK+D DGL  PGTRVSGED+IIGKT P+  D E
Sbjct: 480 KKVGFTLQEEFEKPVRDTAIRLKHGTYDKIDADGLVAPGTRVSGEDIIIGKTAPLPPDSE 539

Query: 535 AQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 593
             G  S+ +T+RD S  L+ +E+G+VDQVL++TN +G +FVKVRVRS R+PQ GDKF+SR
Sbjct: 540 ELGLRSKTHTKRDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRSTRVPQTGDKFASR 599

Query: 594 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 653
           HGQKGT+G+TY QEDMP+T+EG+TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGD
Sbjct: 600 HGQKGTIGITYRQEDMPFTIEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGD 659

Query: 654 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           ATPFTD+TV+ +S  L K GYQ RG E MYNGHTGR+L A ++LGPTYYQRLKHMVD
Sbjct: 660 ATPFTDLTVEAVSSILAKLGYQKRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMVD 716


>gi|52699870|gb|AAU86996.1| DNA-dependent RNA polymerase II second largest subunit [Sarcogyne
           regularis var. regularis]
          Length = 702

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/702 (62%), Positives = 539/702 (76%), Gaps = 38/702 (5%)

Query: 52  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 110
           PLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q 
Sbjct: 1   PLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQK 60

Query: 111 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 170
            AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEG
Sbjct: 61  KAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 120

Query: 171 QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 230
           QACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+FVNG WVG+H
Sbjct: 121 QACGLVKNLALMCYITVGTPSQPIVDFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVH 180

Query: 231 RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------- 283
           RDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF++          
Sbjct: 181 RDPAHLVSTVLTLRRANAISHEVSLVRDIRDREFKIFTDAGRVCRPLFVINNDPRSTNCG 240

Query: 284 RLLIKKRDIIALQQ-RESPED--------GGWHDLVAKGFIEYIDTEEEETTMISMT--- 331
            L++ K+DI  L+  ++ P+D         GW+ L+ KG +EY+D EEEET MI MT   
Sbjct: 241 NLVLTKQDIHKLEDDKDLPDDYEIDEKNPPGWNGLIKKGIVEYVDAEEEETVMIVMTPED 300

Query: 332 ----------------INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
                            +DL++    P    A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 301 LEISRQLQAGYNLPDTSDDLIKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPDHNQ 360

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NA
Sbjct: 361 SPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNA 420

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS+T+
Sbjct: 421 IVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRSDTL 480

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR 
Sbjct: 481 KLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPLRS 540

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 541 TENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTK 600

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L + G
Sbjct: 601 EGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLREHG 660

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           YQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 661 YQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 702


>gi|45120570|gb|AAO64659.2| RNA polymerase II subunit RPB2, partial [Gautieria otthii]
          Length = 856

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/725 (62%), Positives = 541/725 (74%), Gaps = 28/725 (3%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   +  E+KKAY+FGY++HRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 133 MLPHIAMSEGAESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRM 192

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 193 LFRKLTKDVYRYLQKCVETHKEFNLNLAVKPNTITNGLKYSLATGNWGDQKKSMSSKAGV 252

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P                           EGQACGLVKNL
Sbjct: 253 SQVLNRYTYASTLSHLRRCNTPXXXXXXXXXXXXXXXXXXXXXXXXXXXEGQACGLVKNL 312

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT
Sbjct: 313 ALMACISVGSPSPPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWLGVHRDPANLVKT 371

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
           +++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ I  LQQ  
Sbjct: 372 IKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLQQGY 431

Query: 298 -RESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA--------- 345
             + P  G   W D+V  G IE +D EEEET MISMT  DL  +RL  +           
Sbjct: 432 RDDDPAHGQYKWDDMVKGGIIELLDAEEEETVMISMTPEDLENSRLQQQGVQTNTNDGEF 491

Query: 346 ----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
                     +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+T
Sbjct: 492 DPAARLKSVMHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLT 551

Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
           N+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 552 NFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQ 611

Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
           SSIDRG FRS+++RSY D EK  G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT
Sbjct: 612 SSIDRGLFRSMYYRSYMDMEKTSGIHQLEEFTKPTRDTTLRMKHGTYDKLEDDGLIAPGT 671

Query: 516 RVSGEDVIIGKTTPI-SQDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
            V GED+IIGKT PI ++ E  GQ  S +TRRD S  L+ +E+G+VDQVL+TT +DG RF
Sbjct: 672 GVRGEDIIIGKTAPIPAESEELGQKTSSHTRRDVSTPLKSTESGIVDQVLITTGSDGQRF 731

Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
           VKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI
Sbjct: 732 VKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTI 791

Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
           G L+EC++ KVA  +G EGDATPFT++TV+++S  L K GY  RG E MY+GHTGR+L A
Sbjct: 792 GHLVECLLSKVATLIGNEGDATPFTELTVESVSTLLRKQGYHSRGLEVMYHGHTGRKLQA 851

Query: 694 MIFLG 698
            I+LG
Sbjct: 852 QIYLG 856


>gi|300394678|gb|ADK11877.1| DNA-directed RNA polymerase II subunit two, partial [Athelia sp.
           FP-133442]
          Length = 674

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/675 (65%), Positives = 534/675 (79%), Gaps = 26/675 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSSIP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQ--RESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L ++K+ +  L Q  R+  E+   W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240 IVENQQLALQKKHVKWLNQGYRDGDEEEFRWEHLVKGGIIELLDAEEEETVMISMTPEDL 299

Query: 336 VQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL       H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 300 ENSRLQQTGADPHANDGEFDPAARLKAGSDAHTWTHCEIHPSMILGICASIIPFPDHNQS 359

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360 PRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLR 479

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480 MKHGTYDKIEDDGLIAPGTVVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540 ENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600 GIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 675 QMRGFETMYNGHTGR 689
           Q RG E MY+GH+GR
Sbjct: 660 QSRGLEVMYHGHSGR 674


>gi|88601066|gb|ABD46529.1| RNA polymerase II second largest subunit, partial [Tulasnella
           violea]
          Length = 676

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/677 (64%), Positives = 531/677 (78%), Gaps = 21/677 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFRMLF+KLT+DV  ++QKCV+  KD  L  A+K  TIT GLKYSLAT
Sbjct: 2   KRLDLAGPLLAGLFRMLFKKLTKDVFRHLQKCVETHKDFTLGAAVKNTTITQGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VG+ + PI+EFL+EW  E  EE +      ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGTLSAPIIEFLQEWDIEPLEEHANG--SGATKVFVN 179

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+HRD + LV TLRRLRR+ D++ EV +VRDIR +ELR+YTD GR  RPLFIVE  
Sbjct: 180 GVWVGVHRDAQELVMTLRRLRRKDDISAEVSIVRDIRERELRLYTDAGRVCRPLFIVENH 239

Query: 284 RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 343
            LLI+K+ +  LQ+    +  GW +L+  G IE +D EEEET MI MT  DL  +    +
Sbjct: 240 ELLIRKKHVRQLQENSPEQPYGWTNLLHDGVIELLDAEEEETVMICMTPEDLENSLRTKD 299

Query: 344 EAYAD----------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 387
           E   D                T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 300 EFMQDADYDVAKRVKATMNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGK 359

Query: 388 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 447
           QAMGI++TNYQ R+DT++ +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQ
Sbjct: 360 QAMGIFLTNYQIRVDTMSNILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQ 419

Query: 448 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 507
           EDSVIMNQSS+DRG FRS+++RSY D EKK G +  E+F +P R  T+ M+HG+YDKL+D
Sbjct: 420 EDSVIMNQSSVDRGLFRSMYYRSYMDVEKKSGAVSVEEFEKPTRDTTLRMKHGTYDKLED 479

Query: 508 DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLT 565
           DGL  PGT VSGED+IIGKT PI  D E  GQ ++ +T+RD S  L+ +E G++DQVLLT
Sbjct: 480 DGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTQTHTKRDVSTPLKSTENGIIDQVLLT 539

Query: 566 TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 625
           TN +GL+FVK+RVRS RIPQ+GDKF+SRHGQKGTVG+TY QEDMP+T EGITPDI++NPH
Sbjct: 540 TNGEGLKFVKIRVRSTRIPQVGDKFASRHGQKGTVGITYRQEDMPFTAEGITPDIVINPH 599

Query: 626 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 685
           AIPSRMTIG L+EC++ K+A  +G EGDATPFTD+TV+++S  L   GYQ RG E MY+G
Sbjct: 600 AIPSRMTIGHLVECLLSKLATLLGNEGDATPFTDLTVESVSHLLKARGYQSRGLEVMYHG 659

Query: 686 HTGRRLTAMIFLGPTYY 702
           HTG++L A ++LGPTYY
Sbjct: 660 HTGKKLQAQVYLGPTYY 676


>gi|300394686|gb|ADK11881.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           cerebella]
          Length = 685

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/682 (64%), Positives = 536/682 (78%), Gaps = 27/682 (3%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           M+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     TK+
Sbjct: 121 MVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSS-AACTKV 179

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIV
Sbjct: 180 FVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIV 239

Query: 281 EKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
           E Q+LL++K+ I  L Q     +  E+  W  LV  G IE +D EEEET MI+MT  DL 
Sbjct: 240 EDQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMIAMTPEDLE 299

Query: 337 QARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
            +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQSP
Sbjct: 300 NSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQSP 359

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 360 RNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 419

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M
Sbjct: 420 AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRM 479

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
           +HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E
Sbjct: 480 KHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTE 539

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
            G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 540 NGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 599

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           I PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ
Sbjct: 600 IVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQ 659

Query: 676 MRGFETMYNGHTGRRLTAMIFL 697
            RG E MY+GHTGR+L A ++L
Sbjct: 660 SRGLEVMYHGHTGRKLQAQVYL 681


>gi|103001731|gb|ABF71519.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           flavum]
          Length = 700

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/700 (63%), Positives = 538/700 (76%), Gaps = 40/700 (5%)

Query: 50  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 108
           AGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSLATGNWG 
Sbjct: 1   AGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSLATGNWGD 60

Query: 109 QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 168
           Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61  QKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 169 EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 228
           EGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG
Sbjct: 121 EGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVG 180

Query: 229 IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 283
           +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++       
Sbjct: 181 VHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTN 240

Query: 284 --RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISM 330
              L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEEET MI M
Sbjct: 241 CGNLVLTKEHINKLEDDRDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVM 300

Query: 331 TINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFP 371
           T  DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFP
Sbjct: 301 TPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFP 360

Query: 372 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
           DHNQSPRNTYQSAMGKQ+MG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 361 DHNQSPRNTYQSAMGKQSMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 420

Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
           G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P R
Sbjct: 421 GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMR 480

Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 549
           S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ + +RD S 
Sbjct: 481 SDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLHVKRDVST 540

Query: 550 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 609
            LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 541 PLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 600

Query: 610 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           P+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L
Sbjct: 601 PFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLL 660

Query: 670 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
            + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 661 REHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 700


>gi|123979382|gb|ABM81516.1| RNA polymerase II second largest subunit [Parmeliella
           appalachensis]
          Length = 704

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/705 (63%), Positives = 539/705 (76%), Gaps = 45/705 (6%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+  ++ NL   +K+ T+T+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVEGNREFNLTLGVKSTTLTNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRANTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVGS + PI+EF+     E  EE  P   P ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMITRNMEILEEYEPLRSPNATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++E  
Sbjct: 182 GVWVGVHRDPAHLVSTVQSLRRRHWISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIEND 241

Query: 284 -------RLLIKKRDIIALQQRESPEDGG-------------WHDLVAKGFIEYIDTEEE 323
                   L++ K  I+ L+  E  E GG             W  LV +G +EY+D EEE
Sbjct: 242 HKSPNYGNLVLTKEHILRLE--EDKELGGDMDLEEREAKFMGWEGLVNQGVVEYVDAEEE 299

Query: 324 ETTMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHPSLILGV 363
           ET MI MT  DL     +QA    EE   D               T+THCEIHPS+ILG+
Sbjct: 300 ETVMIVMTPEDLEISRHIQAGFAIEEPSDDDPNRRVKAPMNPTAHTWTHCEIHPSMILGI 359

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 360 CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEF 419

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 420 LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 479

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 541
           E F +P +S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 480 EQFEKPMKSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKL 539

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 540 HVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 599

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 600 ITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 659

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           VD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+
Sbjct: 660 VDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 704


>gi|46411490|gb|AAS94316.1| RNA polymerase II [Acarosporina microspora]
          Length = 717

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/717 (61%), Positives = 547/717 (76%), Gaps = 40/717 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPL+  LFR LF+KL +DV  Y+QKCV++GK+ NL   +K+ T+T+
Sbjct: 1   DDRDHFGKKRLDLAGPLMASLFRGLFQKLVKDVFKYLQKCVESGKEFNLTLGVKSTTLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  A   +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKAMSAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
            + WG++CPAETPEGQACGLVKNLALM YITVGS + PI+++L     +  EE  P   P
Sbjct: 121 CTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSAPIIDYLVSRNMDVLEEYEPTRHP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            +TKIFVNG WVG+HR+P  LV+ ++ LRR+  ++ E+ +VRDIR +E +I+TD GR  R
Sbjct: 181 NSTKIFVNGVWVGVHRNPAQLVQHMQVLRRKKYLSFELSLVRDIRDREFKIFTDAGRVCR 240

Query: 276 PLFIVE-------KQRLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEY 317
           PLF++E       K  L++ K  I  L+  R+ P D           GW  LV  G +E+
Sbjct: 241 PLFVIENDPRNPNKGNLILTKDLINKLEDDRDLPPDLTKEEREERYFGWDGLVGSGVVEF 300

Query: 318 IDTEEEETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPS 358
           +D EEEET MI MT  DL     VQA   P E   D              T+THCEIHPS
Sbjct: 301 LDAEEEETVMIVMTPEDLEVSRQVQAGYAPPEPNNDPNARVKGKVNLQQHTWTHCEIHPS 360

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILGVCASIIPFPDHNQSPRNTYQS MGKQAMG+++TN+  R+DT++ +LYYPQKPL TT
Sbjct: 361 MILGVCASIIPFPDHNQSPRNTYQSTMGKQAMGVFLTNFDERIDTMSNILYYPQKPLATT 420

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++
Sbjct: 421 RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRI 480

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 537
           G  + E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI  D E  G
Sbjct: 481 GMSLVETFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIPPDSEEMG 540

Query: 538 QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           Q ++ +T+RD S  LR +E G+VD+VLLTTNA+GL+FVKVR R+ +IPQIGDKF+SRHGQ
Sbjct: 541 QRTKLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRTRTTKIPQIGDKFASRHGQ 600

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGT+G+TY  EDMP++ EGITPDII+NPHAIPSRMTI  LIEC + KV++  G EGDATP
Sbjct: 601 KGTIGVTYRMEDMPFSSEGITPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 660

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           FT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L + +F GPTYYQRLKHMVDDKI
Sbjct: 661 FTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVSQVFFGPTYYQRLKHMVDDKI 717


>gi|52699882|gb|AAU87002.1| DNA-dependent RNA polymerase II second largest subunit [Sporastatia
           testudinea]
          Length = 700

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/700 (62%), Positives = 540/700 (77%), Gaps = 40/700 (5%)

Query: 56  GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAG 114
           GLFRMLF KLT+DV  Y+QKCV++ ++ NL   IKA T+T+GLKYSLATGNWG Q  AA 
Sbjct: 1   GLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGIKASTLTNGLKYSLATGNWGDQKKAAS 60

Query: 115 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 174
           ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACG
Sbjct: 61  SKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 120

Query: 175 LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 234
           LVKNLALM Y+TVGS + PI++F+ +   E  EE  P   P ATKIF+NG WVG+HRDP 
Sbjct: 121 LVKNLALMCYVTVGSPSEPIVDFMIQRNMEVLEEYEPQRSPNATKIFINGVWVGVHRDPA 180

Query: 235 MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLI 287
            LV T++ LRR+  ++ EV ++RDIR +E +I+TD GR  RPLF+++       +  L++
Sbjct: 181 HLVSTVQALRRKNVISHEVSLIRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNRGNLVL 240

Query: 288 KKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
            K  +  L++ +       PE+      GW+ LV +G +EY+D EEEET MI MT  DL 
Sbjct: 241 TKEHVAQLEEDKEKGAEMDPEEKEGKVMGWNSLVNQGVVEYVDAEEEETVMIVMTPEDLE 300

Query: 337 QARL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
            +R                     P    A T+THCEIHPS+ILG+CASIIPFPDHNQSP
Sbjct: 301 ISRQLQAGFAMPETVDDPNRRVKAPVNLTAHTWTHCEIHPSMILGICASIIPFPDHNQSP 360

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIV
Sbjct: 361 RNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIV 420

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  + E F +P RS+T+ +
Sbjct: 421 AIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGMSIVEQFEKPMRSDTLKL 480

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
           +HG+YDKLDDDG+  PG RVSGED++IGKT PI+ D E  GQ ++ + +RD S  LR +E
Sbjct: 481 KHGTYDKLDDDGIVAPGVRVSGEDIVIGKTAPIAPDAEELGQRTKLHVKRDASTPLRSTE 540

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
            G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 541 NGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEG 600

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           + PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L + GYQ
Sbjct: 601 VVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLREHGYQ 660

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
            RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI +
Sbjct: 661 SRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 700


>gi|55583702|gb|AAV53370.1| RNA polymerase II second largest subunit [Ramaria rubella]
          Length = 677

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/678 (65%), Positives = 528/678 (77%), Gaps = 28/678 (4%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKPNTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMACISVGSPSPPVIEFLEEWGLESLEENAHSATP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWLGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTIN 333
           IVE Q+L ++K+ I  L Q  S ED       W  L+  G IE +D EEEET MISMT  
Sbjct: 240 IVENQQLALQKKHIKWLHQGYSDEDPAREQYKWDSLIKGGVIELLDAEEEETVMISMTPE 299

Query: 334 DLVQARLHPEEA-------------------YADTYTHCEIHPSLILGVCASIIPFPDHN 374
           DL  +RL  +                     +A T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 300 DLENSRLQQQGMQTNVNDGEFDPAARLKSVMHAHTWTHCEIHPSMILGICASIIPFPDHN 359

Query: 375 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 434
           QSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG N
Sbjct: 360 QSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQN 419

Query: 435 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 494
           AIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EK  G    E+F +P R  T
Sbjct: 420 AIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDMEKSSGIHQLEEFTKPTRDTT 479

Query: 495 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQ-ASRYTRRDHSISLR 552
           + M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  + E  GQ  S +TRRD S  L+
Sbjct: 480 LRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPESEELGQKTSSHTRRDVSTPLK 539

Query: 553 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
            +E+G+VDQVL+TT +DG RFVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 540 STESGIVDQVLITTGSDGHRFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFT 599

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
            EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L K 
Sbjct: 600 AEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSTXLRKQ 659

Query: 673 GYQMRGFETMYNGHTGRR 690
           GY  RG E MY+GHTGR+
Sbjct: 660 GYHSRGLEVMYHGHTGRK 677


>gi|320172600|gb|ADW24183.1| RNA polymerase II second largest subunit [Veluticeps berkeleyi]
          Length = 679

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/679 (65%), Positives = 538/679 (79%), Gaps = 26/679 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV++ K+ NL  A+K  TIT+GLK
Sbjct: 2   DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLSLAVKHNTITNGLK 61

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 62  YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 121

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 122 WGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSATP-CT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HR+P+ LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 181 KVFVNGVWMGVHRNPQDLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 240

Query: 279 IVEK-QRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTIND 334
           IVE+ Q+L + K+ +  L+Q    +DG    W  LV  G IE +D EEEET MISMT  D
Sbjct: 241 IVEENQQLALHKKHVRWLKQGYRDDDGEPWKWDQLVKNGIIELLDAEEEETVMISMTPED 300

Query: 335 LVQARLHP--------EE----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
           L  +RL          EE           ++ T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 301 LENSRLPAGAVDPRADEEFDPAARLKAATHSHTWTHCEIHPSMILGVCASIIPFPDHNQS 360

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 361 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 420

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ 
Sbjct: 421 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLR 480

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S +++ +
Sbjct: 481 MKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRSHTRRDVSTAMKST 540

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN +G +FVKVR+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 541 EQGIVDQVLITTNHEGQKFVKVRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 600

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GITPDII+NPHAIPSRMTIG L+EC++ KVA   G EGDATPFTD+TV+++S+ L + GY
Sbjct: 601 GITPDIIINPHAIPSRMTIGHLVECLLSKVATLTGNEGDATPFTDLTVESVSQFLREKGY 660

Query: 675 QMRGFETMYNGHTGRRLTA 693
           Q RG E MY+GHTGR+L A
Sbjct: 661 QSRGLEVMYHGHTGRKLQA 679


>gi|113957802|gb|ABI49123.1| RNA polymerase II second largest subunit [Teloschistes exilis]
          Length = 709

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/710 (61%), Positives = 540/710 (76%), Gaps = 43/710 (6%)

Query: 46  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 105
           RLDLAGPLL  LFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  TI+SGLKYSLATG
Sbjct: 1   RLDLAGPLLASLFRMLFQKLTKDIYKYLQKCVESNREFNLTLGVKQNTISSGLKYSLATG 60

Query: 106 NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 164
           NWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61  NWGDQKKAAQAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALM +I+VGS A PI ++L + G E  EE  P  +P ATK+FVNG
Sbjct: 121 AETPEGQACGLVKNLALMCFISVGSPAEPITDYLIQRGMEVLEEYEPTRMPNATKVFVNG 180

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-- 282
            WVG+H DP  LV  ++ LRR+  +  E  +VRDIR +E +I+TD GR  RPLF+V+   
Sbjct: 181 VWVGVHHDPAHLVPNVQELRRKGIILHEASLVRDIRDREFKIFTDAGRVCRPLFVVDNDP 240

Query: 283 ---------------QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDTEEEETT 326
                          QR+  ++  +I + + E  E   GW  LV  G IEY+D EEEET 
Sbjct: 241 KSGNAGYLALTKEMVQRVEDERDTVITMDREERAEQSIGWQGLVDSGAIEYVDAEEEETI 300

Query: 327 MISMTINDLVQARLHPEEAY---------------------ADTYTHCEIHPSLILGVCA 365
           MI+MT  DL  +R H +  Y                     A T+THCEIHPS+ILG+CA
Sbjct: 301 MIAMTPEDLEISR-HVQAGYPMPESNEDAPNQRVKAPVNPTAHTWTHCEIHPSMILGICA 359

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 360 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLK 419

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK++G  V E 
Sbjct: 420 FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKRVGMTVLEK 479

Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 543
           F RP RS T+ ++HG+YDKLDDDGL  PG RVSG+DVIIGKTTPI+ D E  GQ ++ + 
Sbjct: 480 FERPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGKTTPIAPDAEEMGQRTKNHI 539

Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
           ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+T
Sbjct: 540 KKDTSTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGIT 599

Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
           Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT++TVD
Sbjct: 600 YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEITVD 659

Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           ++SK L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVDDKI
Sbjct: 660 SVSKLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPTYYQRLRHMVDDKI 709


>gi|103001406|gb|ABF71506.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 707

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/707 (63%), Positives = 538/707 (76%), Gaps = 40/707 (5%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 61  ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVF 180

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++
Sbjct: 181 VNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 240

Query: 282 KQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEE 323
                     L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEE
Sbjct: 241 NDPKSTNCGNLVLTKEHISKLEDDRDLPAIMDPEEKEAKFFGWDGLVNNGVVEYVDAEEE 300

Query: 324 ETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVC 364
           ET MI MT  DL     +QA     EA  D              T+THCEIHPS+ILG+C
Sbjct: 301 ETVMIVMTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGIC 360

Query: 365 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 424
           ASIIPFPDHNQSPRNTYQSAMGK      +TNY  RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 361 ASIIPFPDHNQSPRNTYQSAMGKXXXXXXLTNYDQRMDTMANILYYPQKPLATTRSMEFL 420

Query: 425 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 484
            FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E
Sbjct: 421 KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVE 480

Query: 485 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 542
            F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ +
Sbjct: 481 QFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLH 540

Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
            +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 541 VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 600

Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 662
           TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 601 TYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 660

Query: 663 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           D++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 661 DSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 707


>gi|86559351|gb|ABD04083.1| RNA polymerase II second largest subunit, partial [Botryobasidium
           subcoronatum]
          Length = 677

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/677 (64%), Positives = 530/677 (78%), Gaps = 27/677 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFRMLFRKLT+DV  Y+QKCV+  ++ NL  A+K  TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAGLFRMLFRKLTKDVYRYLQKCVETHREFNLNVAVKHNTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM  I+VGS + P++EFL+EWG E  EE +      ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEWGLEGLEE-NATHQGNATKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+GIHRD   LVKTLRRLRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGIHRDAPNLVKTLRRLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENH 240

Query: 284 RLLIKKRDI--IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
            L +KK+ +  I  +Q E+ +  GW +LV  G +E +D EEEET MI M+  DL  +R  
Sbjct: 241 ELSLKKKHVKWIMDRQDENGQPYGWSNLVTSGVVELLDAEEEETVMICMSSQDLDDSRQQ 300

Query: 342 PEEAY----------------------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
               Y                      + T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 301 YMSGYVPGPREVEHHASGGARVKAVLNSHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 360

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGIY+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 361 TYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 420

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDSVIMNQSSIDRG FRS+++RS+ D EKK+G L  E+F +P    T+ M+ 
Sbjct: 421 LCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSHMDSEKKVGVLPVEEFEKPTPDTTLRMKR 480

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRYTRRDHSISLRHSETGM 558
           G+YDKLDDDGL PPGT V+GEDVIIGKT P+  D E  GQ   +TRRD S +L+ +E G+
Sbjct: 481 GTYDKLDDDGLIPPGTGVNGEDVIIGKTAPLPPDSEELGQRKSHTRRDASTALKSTENGI 540

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           +DQVL+TTNADGL+FVK+RVRS RIPQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGITP
Sbjct: 541 IDQVLVTTNADGLKFVKIRVRSTRIPQVGDKFASRHGQKGTIGITYRQEDMPFTAEGITP 600

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           DII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFT++TV+++SK L + GYQ RG
Sbjct: 601 DIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTELTVESVSKLLRERGYQSRG 660

Query: 679 FETMYNGHTGRRLTAMI 695
            E MY+GHTGR+L A +
Sbjct: 661 LEVMYHGHTGRKLQAQV 677


>gi|52699906|gb|AAU87014.1| DNA-dependent RNA polymerase II second largest subunit [Xanthoria
           elegans]
          Length = 717

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/720 (60%), Positives = 544/720 (75%), Gaps = 47/720 (6%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G KRLDLAGPLL GLFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  T++SGLK
Sbjct: 1   DXXGKKRLDLAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLTLGVKQNTLSSGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YI+VG+ A PI+++L   G E+ EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYISVGTPADPIVDYLTNRGMESLEEYEPTRAPHAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G H DP  LV  ++ +RR+  +  E  +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGTWIGCHNDPAHLVPHIQEVRRKGIIAHEASLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVEK-----------------QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDT 320
           +++                  Q+L  ++  ++ +   E  E   GW  LV  G +EY+D 
Sbjct: 241 VIDNDPKSENMGNLALTKDMVQKLEDERDMVLTMDPEERAEQVIGWEALVDSGAVEYVDA 300

Query: 321 EEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHP 357
           EEEET MI+MT  DL                       V+A L+P    A T+THCEIHP
Sbjct: 301 EEEETIMIAMTPEDLEISRQIQAGYAAPVPSEDAPNQRVKAPLNPT---AHTWTHCEIHP 357

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL T
Sbjct: 358 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLAT 417

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK+
Sbjct: 418 TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKR 477

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +G  V E F +P R+ T+ ++HG+YDKLDDDGL  PG RVSGEDVIIGKTTPI+ D +  
Sbjct: 478 VGMTVLEKFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTPIAPDAQEM 537

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 538 GQRTKSHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHG 597

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 598 QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDAT 657

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           PFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 658 PFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 717


>gi|110666973|gb|ABG81887.1| RNA polymerase II second largest subunit [Physcia aipolia]
          Length = 718

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/718 (61%), Positives = 544/718 (75%), Gaps = 41/718 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DD DH+G KRLDLAGPLL GLFR LF KLT+DV  Y++ C++  K+  L   +K+ T+T+
Sbjct: 1   DDSDHFGKKRLDLAGPLLAGLFRTLFNKLTKDVEKYLKSCIELNKEFILTLGVKSATLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM  ++VG+ +  I+ FL +   E+ EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCNVSVGTPSDGIVPFLLQRQMESLEEYEPHTAP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATKIFVNG WVG+HR P  LV  ++ LRR+  +  EV ++RDIR +E RI TD GR  R
Sbjct: 181 NATKIFVNGVWVGVHRHPAHLVNAVQSLRRKHVLEPEVSLIRDIREREFRILTDQGRVLR 240

Query: 276 PLFIVEKQ-------RLLIKKRDIIALQQRES-PEDG----------GWHDLVAKGFIEY 317
           PLF+V+          L+  K     L + ++ P D           GW+ L+ +G +EY
Sbjct: 241 PLFVVDNDPKSNRCGDLVFNKEHSQKLDEDDAVPYDMDKEVREKLTFGWNGLIDEGVVEY 300

Query: 318 IDTEEEETTMISMTINDLVQAR--------------------LHPEEAYADTYTHCEIHP 357
           +D EEEET MI MT  DL  +R                      P    A T+THCEIHP
Sbjct: 301 VDAEEEETVMIVMTPQDLAMSRQLRAGYTLDQPDPDEPNRRVTAPLNPTAHTWTHCEIHP 360

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM+T++++LYYPQKPL T
Sbjct: 361 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMSHILYYPQKPLAT 420

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME+L FR+LPAG NAIVAIACYSGYNQ DSVIMNQSSIDRG FRSLF+RSY D+EKK
Sbjct: 421 TRSMEYLKFRELPAGQNAIVAIACYSGYNQGDSVIMNQSSIDRGLFRSLFYRSYTDQEKK 480

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +G  V E F +P RS+T+  ++G+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481 IGAHVVEAFEKPMRSDTLRTKNGTYDKLDDDGLIVPGARVSGEDIIIGKTAPIAPDAEEM 540

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ +T+RD S  LR +E+G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541 GQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 600

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 601 QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 660

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           PFT+VTVD++S+ LH+ GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 PFTEVTVDSVSRLLHEHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718


>gi|119644179|gb|ABL85610.1| RNA polymerase II second largest subunit [Buellia stillingiana]
          Length = 717

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/720 (62%), Positives = 542/720 (75%), Gaps = 46/720 (6%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFR LF KL +DV  Y++ C++N ++ NL   +K+  IT+
Sbjct: 1   DDRDHFGKKRLDLAGPLLANLFRTLFNKLNKDVERYLKNCIENNREFNLTLGVKSTHITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM Y++VG+    +++FL +   E+ EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYVSVGAPIEGVVDFLFQRQMESLEEYDPLTSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATKIFVNG WVG+HR P  LV  ++ LRR+  +  EV +VRDIR +E +I TD GR  R
Sbjct: 181 HATKIFVNGVWVGVHRSPAALVNAVQDLRRKQVIAYEVSLVRDIRDREFKILTDQGRVLR 240

Query: 276 PLFIVEKQ-------RLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEY 317
           PLF+VE          L++ K  I  L+  R+ P D           GWH LV +G +EY
Sbjct: 241 PLFVVENDPKSPICGDLVLNKGHIEKLESDRDIPLDIDKEERVKKTYGWHGLVNEGVVEY 300

Query: 318 IDTEEEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEI 355
           +D +EEET MI MT  DL                      V+A ++P    A T+THCEI
Sbjct: 301 VDADEEETVMIVMTPYDLNVSRQVQAGYALPEDNDDPNARVKAPINPT---AHTWTHCEI 357

Query: 356 HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 415
           HPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM+T+A++LYYPQKPL
Sbjct: 358 HPSMILGVCVSIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMAHILYYPQKPL 417

Query: 416 VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 475
            TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRS FFRSY D+E
Sbjct: 418 ATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSPFFRSYSDQE 477

Query: 476 KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-E 534
            ++G  V E F +P RSNTM ++HG+Y+KLDDDGL  PG RVSGED+IIGKT PI+ D E
Sbjct: 478 GRIGLNVIEQFEKPMRSNTMKLKHGTYEKLDDDGLIIPGARVSGEDIIIGKTAPITADAE 537

Query: 535 AQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 593
             GQ  +   RRD S  LR +E+G+VDQV LTTNA+G +FVKVR+R+ +IPQIGDKF+SR
Sbjct: 538 ELGQGIKIRERRDASTPLRSTESGLVDQVALTTNAEGHKFVKVRMRTTKIPQIGDKFASR 597

Query: 594 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 653
           HGQKGT+G+TY QEDMP+T EG+ PDII+NPHAIPSRMTI  LIEC + KV++  G EGD
Sbjct: 598 HGQKGTIGITYRQEDMPFTSEGLVPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGD 657

Query: 654 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           ATPFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 658 ATPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 717


>gi|52699847|gb|AAU86985.1| DNA-dependent RNA polymerase II second largest subunit [Pertusaria
           amara]
          Length = 716

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/716 (61%), Positives = 543/716 (75%), Gaps = 40/716 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH G KRLDLAGPL+ GLFR LF+KLTRDV  Y+QKCV+  ++ NL   +K+ T+T+GLK
Sbjct: 1   DHXGKKRLDLAGPLMAGLFRNLFKKLTRDVFKYLQKCVETNREFNLTLGVKSTTLTNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAAQSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNL+LM  +TVGS + PI+ F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLSLMCCVTVGSPSEPIINFMIQRNMEILEEYEPMNSPHAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNG WVG+HRD   LV  + +LRRR  +  EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KIFVNGVWVGVHRDAASLVSNVIQLRRRGVIEPEVSMVRDIRDREFKIFTDAGRVQRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 320
           +V+       K  L++ K  +  L+  +E P+D           GW  LV +G +EY+D 
Sbjct: 241 VVDNDVKSSNKGSLVLTKELVSRLEDDKELPDDMDPDEKEAKMLGWKGLVERGVVEYLDA 300

Query: 321 EEEETTMISMTINDL-----VQARLH--------------PEEAYADTYTHCEIHPSLIL 361
           EEEET MI MT  DL     +QA                 P    A T+THCEIHPS+IL
Sbjct: 301 EEEETVMIVMTPEDLEISRQIQAGYQMPEPTDEPNKRVKAPLNRTAHTWTHCEIHPSMIL 360

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           G+CASIIPFPDHNQSPRNTYQSAMG QAMG+++TN+  RMDT+A +LYYPQKPL TTR+M
Sbjct: 361 GICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNFDERMDTMANILYYPQKPLATTRSM 420

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  
Sbjct: 421 EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMS 480

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 540
           V E F +P RS+T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ +
Sbjct: 481 VVEQFEKPMRSDTLKLKHGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPIAPDAEELGQRT 540

Query: 541 R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           + + +RD S  LR +E G+VD+VLLTTNA+GLRFVKVR R+ ++PQIGDKF+SRHGQKGT
Sbjct: 541 KLHVKRDVSTPLRSTENGIVDKVLLTTNAEGLRFVKVRTRTTKVPQIGDKFASRHGQKGT 600

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           +G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601 IGITYRMEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 660

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 661 VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 716


>gi|52699827|gb|AAU86975.1| DNA-dependent RNA polymerase II second largest subunit [Lecanora
           concolor]
          Length = 708

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/708 (62%), Positives = 540/708 (76%), Gaps = 41/708 (5%)

Query: 47  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 106
           LDLAGPLL GLFRMLF KLT+DV  Y+QKCV+NGK+ N   A+K+ T+T+GLKYSLATGN
Sbjct: 1   LDLAGPLLAGLFRMLFHKLTKDVYKYLQKCVENGKEFNPTLAVKSSTLTNGLKYSLATGN 60

Query: 107 WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 165
           WG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPA
Sbjct: 61  WGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 120

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALM YITVGS + PI++F+ +   +  EE  P   P ATKIFVNG 
Sbjct: 121 ETPEGQACGLVKNLALMCYITVGSPSDPIIDFMVQRNMDVLEEYEPLTFPNATKIFVNGV 180

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-- 283
           WVG+HR+P  LV  ++ LRR   ++ EV +VRD+R +E +I+TD GR  RPLF+++    
Sbjct: 181 WVGVHREPAHLVSNVQALRRNGLISHEVSLVRDVRDREFKIFTDAGRVCRPLFVIDNDPK 240

Query: 284 -----RLLIKK---------RDIIALQQRESPE--DGGWHDLVAKGFIEYIDTEEEETTM 327
                 L++ K         RD +     E  E  D GW  L+ +G +EY+D EEEET M
Sbjct: 241 SSNCGNLVLTKEIVQQVEEDRDTLIGMDPEERERLDLGWKRLIKQGVVEYVDAEEEETIM 300

Query: 328 ISMTINDLVQAR------LHPE--------------EAYADTYTHCEIHPSLILGVCASI 367
           I+MT   L ++R        PE                 A  +THCEIHPS+ILG+CASI
Sbjct: 301 ITMTPQQLEESRQVLQGYTLPEPGDDELNKRVTAKVNTSARNWTHCEIHPSMILGICASI 360

Query: 368 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 427
           IPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR
Sbjct: 361 IPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEFLKFR 420

Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
           +LPAG NAIVAIACY+GYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F 
Sbjct: 421 ELPAGQNAIVAIACYTGYNQEDSVIMNQSSIDRGLFRSLFYRAYSDQEKQIGHSVLEQFE 480

Query: 488 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRR 545
           +P RS T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ +T+R
Sbjct: 481 KPMRSETLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPITADAEELGQRTKAHTKR 540

Query: 546 DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 605
           D S  LR +E G+VDQVL++TNADGLRF KVR+R+ +IPQIGDKF+SRHGQKGT+G+TY 
Sbjct: 541 DISTPLRSTENGIVDQVLMSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 600

Query: 606 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 665
           QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++
Sbjct: 601 QEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSV 660

Query: 666 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           S+ L + GY  RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 661 SRLLRENGYHSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 708


>gi|52699820|gb|AAU86972.1| DNA-dependent RNA polymerase II second largest subunit [Gyromitra
           esculenta]
          Length = 699

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/699 (62%), Positives = 540/699 (77%), Gaps = 32/699 (4%)

Query: 46  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 105
           RLDLAGPLL GLFR L++KLT+DV  Y++KCV+  K+ NL  A+K+ TIT+GLKYSLATG
Sbjct: 1   RLDLAGPLLAGLFRTLWKKLTKDVYKYLEKCVETAKEFNLTLAVKSNTITNGLKYSLATG 60

Query: 106 NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 164
           NWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61  NWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNL+LM YIT+G+  YP+++FL     E  EE  P   P ATK+FVNG
Sbjct: 121 AETPEGQACGLVKNLSLMSYITIGTPGYPLVDFLSSNDMELLEEYEPQRSPNATKVFVNG 180

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 284
            WVG HRDP ML K ++ +RR+  V+ EV ++RDIR +E +I+TD GR  RPLF+++   
Sbjct: 181 VWVGTHRDPLMLHKVVQDVRRQGVVSHEVSIIRDIRDREFKIFTDAGRVCRPLFVIDNDP 240

Query: 285 LLIKKRDIIALQQR-ESPEDG---------GWHDLVAKGFIEYIDTEEEETTMISMTIND 334
              ++  ++ L++  E  ED          GW  L+  G +EY+D EEEET MI MT  D
Sbjct: 241 RSERRGQLVLLKEHVEKLEDDHTLPVDERFGWEGLLYSGSVEYLDAEEEETAMIVMTPED 300

Query: 335 LVQARL------HPEEAY-------------ADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +R        P + Y             A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 301 LEMSRQVQLGYEEPHDQYSAKRFKAPINAHTAHTWTHCEIHPSMILGICASIIPFPDHNQ 360

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMG++ TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 361 SPRNTYQSAMGKQAMGVFXTNFSERMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 420

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E+F +P RSNT+
Sbjct: 421 IVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRIGMQVVEEFEKPTRSNTL 480

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRH 553
            ++ G+Y+KLD+DGL  PG RVSGED+IIGKT PI+ D +  GQ  ++ T+RD S  LR 
Sbjct: 481 KLKQGTYEKLDEDGLVAPGVRVSGEDIIIGKTAPIAPDVDEMGQRQKFHTKRDVSTPLRS 540

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G+VDQV+LTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGTVG+TY QEDMP+T 
Sbjct: 541 TENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTVGITYRQEDMPFTC 600

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTV+++S  L + G
Sbjct: 601 EGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVESVSTLLRQNG 660

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           YQ RGFE MYNG+TGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 661 YQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDK 699


>gi|113957845|gb|ABI49126.1| RNA polymerase II second largest subunit [Ramalina complanata]
          Length = 709

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/710 (62%), Positives = 538/710 (75%), Gaps = 46/710 (6%)

Query: 49  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 108
           LAGPLL GLFRMLF KLT+DV  Y+Q+CV+N K+ NL  A+K+ T+T+GLKYSLATGNWG
Sbjct: 1   LAGPLLEGLFRMLFYKLTKDVYKYLQRCVENNKEFNLTLAVKSTTLTNGLKYSLATGNWG 60

Query: 109 -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 167
            Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 61  DQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 120

Query: 168 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 227
           PEGQACGLVKNLALM YITVG+   PI++F+ +   E  EE  P   P ATKIFVNG WV
Sbjct: 121 PEGQACGLVKNLALMCYITVGTPGQPIVDFMMQRQMELLEEYEPLSNPNATKIFVNGVWV 180

Query: 228 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 283
           G+H  P +L  T+  LRR+  ++ EV +VRDIR +E +I+TD GR  RPLF+VE      
Sbjct: 181 GVHSQPAILTATVMSLRRKGLISYEVSLVRDIRDREFKIFTDAGRVCRPLFVVESNPRDQ 240

Query: 284 ---RLLIKKRDIIAL------------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMI 328
               L++ K D+  L            Q RE  +  GW  LV  G +EY+D EEEET MI
Sbjct: 241 NFGNLVLTKHDVQELDHNRELISSMDAQDRED-QAIGWQGLVKNGKVEYVDAEEEETIMI 299

Query: 329 SMTINDLVQARLHPE-----------------------EAYADTYTHCEIHPSLILGVCA 365
            MT  DL  ++ +                         +A    +THCEIHPS+ILG+CA
Sbjct: 300 VMTPEDLEISKHYSTYGDDALAGDDNKDDPNKRMKVRPKAIRQAWTHCEIHPSMILGICA 359

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 360 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLK 419

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E 
Sbjct: 420 FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEQ 479

Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 543
           F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + 
Sbjct: 480 FEKPMRSDTLSLKHGTYDKLDDDGIVSPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 539

Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
           +RD S  LR +E G+VDQVLL+TN+DGLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 540 KRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 599

Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
           Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD
Sbjct: 600 YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVD 659

Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           ++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 660 SVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 709


>gi|357216613|gb|AET71040.1| RNA polymerase II second largest subunit, partial [Trametes
           conchifer]
          Length = 679

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/680 (64%), Positives = 532/680 (78%), Gaps = 30/680 (4%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+  L  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFQLGLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q     ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISAEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ-RESPEDGG------WHDLVAKGFIEYIDTEEEETTMISMTIND 334
            Q+LL++K+ I  L + +E PE         W +L+  G IE +D EEEET MI MT  D
Sbjct: 240 NQQLLLQKKHIENLARGKEEPEKDSPKFEYKWDNLIKDGVIELLDAEEEETVMICMTPED 299

Query: 335 LVQARLHPE-------------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL  E                      A T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 300 LENSRLQSEGIDPHANDGELDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           +VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R +T+
Sbjct: 420 VVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDSTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ 
Sbjct: 480 RMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540 TEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + G
Sbjct: 600 EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKG 659

Query: 674 YQMRGFETMYNGHTGRRLTA 693
           YQ RG E MY+GHTGR++ A
Sbjct: 660 YQSRGLEIMYHGHTGRKIQA 679


>gi|357216611|gb|AET71039.1| RNA polymerase II second largest subunit, partial [Trametes ectypa]
          Length = 680

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/680 (64%), Positives = 533/680 (78%), Gaps = 30/680 (4%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+  L  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFQLGLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q     ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISAEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ-RESPEDGG------WHDLVAKGFIEYIDTEEEETTMISMTIND 334
            Q+LL++K+ I  L + +E PE         W +L+  G IE +D EEEET MI MT  D
Sbjct: 240 NQQLLLQKKHIENLARGKEEPEKDAPKFEYKWDNLIKDGVIELLDAEEEETVMICMTPED 299

Query: 335 LVQARLH-----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL      P E                A T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 300 LENSRLQSAGIDPHENDGELDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           +VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R +T+
Sbjct: 420 VVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDSTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ 
Sbjct: 480 RMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540 TEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + G
Sbjct: 600 EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKG 659

Query: 674 YQMRGFETMYNGHTGRRLTA 693
           YQ RG E MY+GHTGR++ A
Sbjct: 660 YQSRGLEIMYHGHTGRKIQA 679


>gi|123979372|gb|ABM81511.1| RNA polymerase II second largest subunit [Rhizocarpon superficiale]
          Length = 703

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/703 (62%), Positives = 540/703 (76%), Gaps = 42/703 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFR LF+KL++DV  Y+QKCV+  ++ NL   +K+ T+TSGLKYSLAT
Sbjct: 2   KRLDLAGPLLAGLFRTLFKKLSKDVFKYLQKCVEQNREFNLTLGVKSTTLTSGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   +  EE  P   P ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMVQRSMDLLEEYEPQSYPNATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 281
           G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++  
Sbjct: 182 GVWVGVHRDPAHLVSTIQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDND 241

Query: 282 -----KQRLLIKKRDIIALQQ------------RESPEDGGWHDLVAKGFIEYIDTEEEE 324
                +  L++ K+ I  L++            RES +  GW  LV +G +EY+D EEEE
Sbjct: 242 PRSPNRGSLVLTKQHIQKLEEDHEIGADMDPGERES-KFMGWEGLVNQGVVEYVDAEEEE 300

Query: 325 TTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCA 365
           T MI MT  DL  +R                     P    A T+THCEIHPS+ILG+CA
Sbjct: 301 TVMIVMTPADLEISRQLQQGYTLPEASDDPNRRVKAPMNPTAHTWTHCEIHPSMILGICA 360

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQ PL TTR+ME L 
Sbjct: 361 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQNPLATTRSMEFLK 420

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FR+LPAG NAIVAIACYSGYNQEDSVIMNQSS+DRG FRSLF+R+Y D+EK++GT V E 
Sbjct: 421 FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSVDRGLFRSLFYRAYTDQEKRVGTSVVEQ 480

Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 543
           F +P RS+T+ ++HG+YDKLDDDG+  PG R+SGED+IIGKT PI+ D E  GQ ++ + 
Sbjct: 481 FEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDIIIGKTAPIAPDAEELGQRTKLHV 540

Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
           +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 541 KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 600

Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
           Y QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD
Sbjct: 601 YRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVD 660

Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           ++S  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+
Sbjct: 661 SVSSLLREHGYQSRGFEVMYNGHTGRKLAAQVFLGPTYYQRLR 703


>gi|46411496|gb|AAS94318.1| RNA polymerase II [Ostropa barbara]
          Length = 719

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/719 (61%), Positives = 548/719 (76%), Gaps = 42/719 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DD DH+G KRLDLAGPLL  LFR LFR+LT DV  Y+ KCV + K+ NL   +K+ T+T+
Sbjct: 1   DDSDHFGKKRLDLAGPLLAKLFRNLFRRLTGDVYKYLTKCVSDNKEFNLTLGVKSTTLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM Y+TVG+ + PI+EF+ +   E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG WVG+HRDP  LVKT++ LRR   ++ EV ++RDIR +E +I+TD GR  R
Sbjct: 181 NATKVFVNGVWVGVHRDPAHLVKTVQHLRRSHLISHEVSLIRDIRDREFKIFTDAGRVCR 240

Query: 276 PLFIVE-------KQRLLIKKRDIIALQ------------QRESPEDGGWHDLVAKGFIE 316
           PLF+++       K  L++ K  I  L+            Q+ +    G+  L+  G +E
Sbjct: 241 PLFVIDNDVDSANKGNLVLNKEHIRRLEDDQTMPANMDAEQKANSGFFGFQGLINDGVVE 300

Query: 317 YIDTEEEETTMISMTINDLVQAR-------LHPEEA-------------YADTYTHCEIH 356
           Y+D EEEET MI MT  DL  +R       + P+++              A  +THCEIH
Sbjct: 301 YVDAEEEETVMIVMTPEDLDISRQLQAGYQIRPDDSGDLNKRVKAPMNPTAHIWTHCEIH 360

Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
           PS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL 
Sbjct: 361 PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLA 420

Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
           TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQ+SIDRG FRSLF+R+Y D+EK
Sbjct: 421 TTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQTSIDRGLFRSLFYRAYTDQEK 480

Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EA 535
           ++G  V E F +P R++T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT P++ D E 
Sbjct: 481 RIGMNVVEQFEKPYRADTLKLKHGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPMAPDAEE 540

Query: 536 QGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 594
            GQ ++ +T+RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRH
Sbjct: 541 LGQRTKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRH 600

Query: 595 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 654
           GQKGT+G+TY QEDMP+T +GI PD+I+NPHAIPSRMTI  LIEC + KV+   G EGDA
Sbjct: 601 GQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDA 660

Query: 655 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           TPFT+VTVD++SK L   GYQ RGFE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 TPFTEVTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKI 719


>gi|52699904|gb|AAU87013.1| DNA-dependent RNA polymerase II second largest subunit [Umbilicaria
           muehlenbergii]
          Length = 709

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/709 (62%), Positives = 537/709 (75%), Gaps = 40/709 (5%)

Query: 41  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 100
           H+G KR DLAGPLL GLFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLKY
Sbjct: 1   HFGKKRXDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTLTNGLKY 60

Query: 101 SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 159
           SLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 61  SLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 120

Query: 160 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 219
           G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK
Sbjct: 121 GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPQRSPNATK 180

Query: 220 IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 279
           +FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+
Sbjct: 181 VFVNGVWVGVHRDPAHLVSTVQSLRRRNLISHEVSLVRDIRDREFKIFTDAGRVCRPLFV 240

Query: 280 VEKQ-------RLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTE 321
           ++          L++ K  I  L+  +       PE+      GW  LV +G +EY+D E
Sbjct: 241 IDNDPKSPNNGNLVLTKEHINRLEDDKDLGPDTDPEEKAAKFMGWEGLVKQGVVEYVDAE 300

Query: 322 EEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILG 362
           EEET MI MT  DL  +R                     P    A T+THCEIHPS+ILG
Sbjct: 301 EEETVMIVMTPEDLEISRQIQAGYAMPETTDDPNKRVKAPMNPTAHTWTHCEIHPSMILG 360

Query: 363 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 422
           +CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TN+  RMDT+A +LYYPQKPL TTR+ME
Sbjct: 361 ICASIIPFPDHNQSPRNTYQSAMGKQAMGXFLTNFDXRMDTMANILYYPQKPLATTRSME 420

Query: 423 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 482
            L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D+EK++G  V
Sbjct: 421 FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDQEKRIGMSV 480

Query: 483 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR 541
            E   +P RS+T+ + HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++
Sbjct: 481 VEQXEKPMRSDTLRLXHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTK 540

Query: 542 -YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
            + +RD S  LR +E G+VDQVL TTNA+GLRFV VR+R+ +IPQIGDKF+SRHGQKGT+
Sbjct: 541 SHVKRDVSTPLRSTENGIVDQVLXTTNAEGLRFVXVRMRTTKIPQIGDKFASRHGQKGTI 600

Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
           G+TY  EDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+V
Sbjct: 601 GITYRSEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEV 660

Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           TVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 661 TVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 709


>gi|103001854|gb|ABF71524.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           discurrens]
          Length = 702

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/702 (63%), Positives = 535/702 (76%), Gaps = 40/702 (5%)

Query: 49  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 108
           LAGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSLATGNWG
Sbjct: 1   LAGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSLATGNWG 60

Query: 109 -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 167
            Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 61  DQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 120

Query: 168 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 227
           PEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WV
Sbjct: 121 PEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWV 180

Query: 228 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 283
           G+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++      
Sbjct: 181 GVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKST 240

Query: 284 ---RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMIS 329
               L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEEET MI 
Sbjct: 241 NCGNLVLTKEHINKLEDDRDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIV 300

Query: 330 MTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPF 370
           MT  DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPF
Sbjct: 301 MTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPF 360

Query: 371 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 430
           PDHNQSPRNTYQSAMG QAMG    NY  RMDT+A +LYYPQKPL TTR+ME L FR+LP
Sbjct: 361 PDHNQSPRNTYQSAMGXQAMGXXXXNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELP 420

Query: 431 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 490
           AG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P 
Sbjct: 421 AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPM 480

Query: 491 RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHS 548
           RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S
Sbjct: 481 RSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVS 540

Query: 549 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
             LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 541 TPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQED 600

Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
           MP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK 
Sbjct: 601 MPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKL 660

Query: 669 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD
Sbjct: 661 LREHGYQSRGFEAMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 702


>gi|103001903|gb|ABF71526.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           flavum]
          Length = 699

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/699 (63%), Positives = 535/699 (76%), Gaps = 40/699 (5%)

Query: 50  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 108
           AGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSLATGNWG 
Sbjct: 1   AGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSLATGNWGD 60

Query: 109 QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 168
           Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61  QKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 169 EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 228
           EGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG
Sbjct: 121 EGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVG 180

Query: 229 IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 283
           +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++       
Sbjct: 181 VHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTN 240

Query: 284 --RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISM 330
              L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEEET MI M
Sbjct: 241 CGNLVLTKEHINKLEDDRDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVM 300

Query: 331 TINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFP 371
           T  DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFP
Sbjct: 301 TPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFP 360

Query: 372 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
           DHNQSPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 361 DHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 420

Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
           G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P R
Sbjct: 421 GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMR 480

Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 549
           S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ + +RD S 
Sbjct: 481 SDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLHVKRDVST 540

Query: 550 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 609
            LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 541 PLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 600

Query: 610 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           P+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L
Sbjct: 601 PFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLL 660

Query: 670 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
            + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR +HM
Sbjct: 661 REHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRXRHM 699


>gi|111183476|gb|ABH07989.1| RNA polymerase II second largest subunit, partial [Tilletiopsis
           minor]
          Length = 695

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/696 (62%), Positives = 545/696 (78%), Gaps = 31/696 (4%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLD+AGPLL GLFRMLFRKLTRD+  ++QKCV+  KD ++  A+KA TIT+GLKYS+
Sbjct: 1   GKKRLDMAGPLLAGLFRMLFRKLTRDIYRHLQKCVEEKKDFHITQAVKAATITNGLKYSI 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q      RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VGS ++PI+EFL+E+G ++ E++  A   +ATK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSTISVGSPSFPIIEFLQEFGLDSLEDMQVAS-SKATKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G H DP  LV  +R LRR+ D++TEV +V DIR KELR+YTD GR  RPLFIV+
Sbjct: 180 VNGVWMGTHDDPGTLVSFIRELRRKDDISTEVSMVHDIREKELRLYTDAGRVLRPLFIVD 239

Query: 282 KQR--LLIKKRDIIALQQRESP--EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
           +    L IK++ +  L  +++P  ++  W++LV    IEY+D EEEETT+I M+  DL  
Sbjct: 240 QDTMTLRIKRQHMDWLHDQQTPDGQEWKWNELVTNALIEYLDAEEEETTLICMSPTDLEN 299

Query: 338 ARLHPEEAYA----------------------DTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           +R++ ++  +                       T+THCEIHP++ILG+CASIIPFP HNQ
Sbjct: 300 SRVYNQDPKSYVGPRSTRDPSARLVSTAFFAPKTWTHCEIHPAMILGICASIIPFPXHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL TTR+MEHL FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLATTRSMEHLRFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIM+QS+IDRG FRSL++R+Y D EKK+G ++ E F +P R  T+
Sbjct: 420 IVAILCYSGYNQEDSVIMSQSAIDRGLFRSLYYRTYTDMEKKLGVIMLETFEKPTRDTTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRH 553
            M+HG+YDKLD+DGL  PGTRVSGED+IIGKTTP+  D  E   +++ +T+RD S  L+ 
Sbjct: 480 RMKHGTYDKLDEDGLVAPGTRVSGEDIIIGKTTPLPPDTEELGLRSASHTKRDVSTPLKS 539

Query: 554 SETGMVDQVLLTTNAD-GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
           +E G+VDQVLLT + D   RFVKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 540 TENGIVDQVLLTVSHDHSQRFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFT 599

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
            EG+TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGDATPFTD+TV+ +S+ L + 
Sbjct: 600 REGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTDLTVEAVSEILREM 659

Query: 673 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 708
           GYQ RG E MYNGHTGR+L A ++LGPTYYQRLKHM
Sbjct: 660 GYQSRGLEVMYNGHTGRKLQAQVYLGPTYYQRLKHM 695


>gi|52699908|gb|AAU87015.1| DNA-dependent RNA polymerase II second largest subunit
           [Xanthomendoza fallax]
          Length = 717

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/720 (60%), Positives = 541/720 (75%), Gaps = 47/720 (6%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G KRLD AGPLL GLFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  T++SGLK
Sbjct: 1   DXXGKKRLDXAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLTLGVKQNTLSSGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YI+VG+ A PI+++L   G EN EE  PA  P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYISVGTPADPIIDYLSNRGMENLEEYEPARSPHAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNG W+G+H DP  LV  ++ +RR+  +  E  +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KIFVNGTWIGVHNDPANLVPHIQDVRRKGIIAHEASLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVEKQ----------------RLLIKKRDIIALQQRESPEDG--GWHDLVAKGFIEYIDT 320
           +++                  + L  +RD++     E   D   GW  LV  G IEY+D 
Sbjct: 241 VIDNDPRSENMGNLALTKDMVQKLEDERDVVLTMDPEERADHVIGWEALVDAGAIEYVDA 300

Query: 321 EEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHP 357
           EEEET MI+MT  DL                       V+A L+P    A T+THCEIHP
Sbjct: 301 EEEETIMIAMTPEDLEISRQIQAGYAAPVPSEDAPNQRVKAPLNPT---AHTWTHCEIHP 357

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMG QAMG+++T Y  RMDT+A +LYYPQKPL T
Sbjct: 358 SMILGICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTXYDERMDTMANILYYPQKPLAT 417

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK+
Sbjct: 418 TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKR 477

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +G  V E F +P R+ T+ ++HG+YDKLDDDGL  PG RVSGEDVIIGKTTPI+ D +  
Sbjct: 478 VGMTVLEKFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTPIAPDAQEM 537

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ ++PQIGDKF+SRHG
Sbjct: 538 GQRTKNHVKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVPQIGDKFASRHG 597

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 598 QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDAT 657

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           PFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV  KI +
Sbjct: 658 PFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVXXKIXA 717


>gi|300394682|gb|ADK11879.1| DNA-directed RNA polymerase II subunit two, partial [Boletus
           edulis]
          Length = 673

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/674 (65%), Positives = 528/674 (78%), Gaps = 26/674 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSATP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L ++K+ I  L Q     DG    W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240 IVENQQLALQKKHIKWLNQGYRDGDGEEFKWEQLVKTGIIELLDAEEEETVMISMTPEDL 299

Query: 336 VQARL-----HPEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL     +P E                A T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300 ENSRLQSAGINPHENDGEFDPAARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++R Y D EKK G    E+F +P R  T+ 
Sbjct: 420 VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYMDLEKKSGIQQLEEFEKPTRDTTLR 479

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480 MKHGTYDKLEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540 ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           GI PD+++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600 GIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 675 QMRGFETMYNGHTG 688
           Q RG E MY+G+TG
Sbjct: 660 QSRGLEVMYHGYTG 673


>gi|88601064|gb|ABD46528.1| RNA polymerase II second largest subunit, partial [Tulasnella sp.
           FCUG 2668]
          Length = 670

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/671 (65%), Positives = 525/671 (78%), Gaps = 21/671 (3%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL GLFRMLF+KLT+DV  ++QKCV+  KD  L   +K  TIT 
Sbjct: 2   DDRDHFGKKRLDLAGPLLAGLFRMLFKKLTKDVFRHLQKCVETHKDFTLGAXVKNTTITQ 61

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 62  GLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLH 121

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WGM+CPAETPEGQACGLVKNLALM  I+VG+ + PI+EFL+EW  E  EE +     
Sbjct: 122 NTHWGMVCPAETPEGQACGLVKNLALMSCISVGTLSAPIIEFLQEWDIEPLEEHANGA-- 179

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG WVG+HRD + LV TLRRLRR+ D++ EV +VRDIR +ELR+YTD GR  R
Sbjct: 180 GATKVFVNGVWVGVHRDAQELVMTLRRLRRKDDISAEVSIVRDIRERELRLYTDAGRVCR 239

Query: 276 PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           PLFIVE   LLI+KR +  LQ+    +  GW +L+  G IE +D EEEET MI MT  DL
Sbjct: 240 PLFIVENHELLIRKRHVRQLQENSPEQPYGWTNLLHDGVIELLDAEEEETVMICMTPEDL 299

Query: 336 VQARLHPEEAYAD----------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
             +    +E   D                T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 300 ENSLRTKDEFMQDADYDVAKRVKATMNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 359

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGIY+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA VAI
Sbjct: 360 TYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNATVAI 419

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK+G L  E+F +P R  T+ M+H
Sbjct: 420 LCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYTDAEKKVGILPLEEFEKPTRDTTLRMKH 479

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+Y+KL+DDGL  PGT V+GED+IIGKT P+  D E  GQ  R +TRRD S  L+ +E G
Sbjct: 480 GTYEKLEDDGLIAPGTGVTGEDIIIGKTAPLPPDSEELGQRLRSHTRRDVSTPLKSTENG 539

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVL+TTN DGL+FVK+R+RS RIPQ+GDKF+SRHGQKGTVG+TY  EDMP+T EGIT
Sbjct: 540 IVDQVLVTTNGDGLKFVKIRIRSTRIPQVGDKFASRHGQKGTVGITYRHEDMPFTAEGIT 599

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTIG LIEC++ K+A  +G EGDATPFT++TV+++S+ L + GYQ R
Sbjct: 600 PDIIINPHAIPSRMTIGHLIECLLSKLATLIGNEGDATPFTELTVESVSELLRQHGYQSR 659

Query: 678 GFETMYNGHTG 688
           G E MY+GHTG
Sbjct: 660 GLEVMYHGHTG 670


>gi|46411502|gb|AAS94321.1| RNA polymerase II [Punctelia hypoleucites]
          Length = 705

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/705 (62%), Positives = 544/705 (77%), Gaps = 41/705 (5%)

Query: 50  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 108
           AGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+GL+YSLATGNWG 
Sbjct: 1   AGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLATGNWGD 60

Query: 109 QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 168
           Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61  QKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 169 EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 228
           EGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVNG WVG
Sbjct: 121 EGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSPNATKIFVNGVWVG 180

Query: 229 IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------- 281
           +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  RPLF+++       
Sbjct: 181 VHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCRPLFVIDNDPRSSN 240

Query: 282 KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEYIDTEEEETTMISM 330
           +  L++ K  +  L+  RE+     P+     D GW  LV +G +EY+D EEEET MI M
Sbjct: 241 RGNLVLTKEHVQKLELDRENWATTEPDVREETDMGWQGLVKEGVVEYVDAEEEETIMIVM 300

Query: 331 TINDLVQAR----------LHPEE----------AYADTYTHCEIHPSLILGVCASIIPF 370
           T  DL  +R           +P+E            A T+THCEIHPS+ILG+CASIIPF
Sbjct: 301 TPEDLEISRQLQAGYAMPEANPDELNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPF 360

Query: 371 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 430
           PDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKPL TTR+ME L FR+LP
Sbjct: 361 PDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKFRELP 420

Query: 431 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 490
           AG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P 
Sbjct: 421 AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEQFEKPM 480

Query: 491 RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHS 548
           RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S
Sbjct: 481 RSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDTS 540

Query: 549 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
             LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 541 TPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQED 600

Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
           MP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDATPFT+VTVD++S+ 
Sbjct: 601 MPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDATPFTEVTVDSVSRL 660

Query: 669 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVDDKI
Sbjct: 661 LREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQRLRHMVDDKI 705


>gi|45120580|gb|AAO64681.2| RNA polymerase II subunit RPB2, partial [Stereum hirsutum]
          Length = 801

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/675 (64%), Positives = 530/675 (78%), Gaps = 27/675 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+   +  E+KKAY+FGY+IHRLLL  + RR  DDRDH+G KRLDLAGPLL  LFRM
Sbjct: 128 MLPHISMSEGSESKKAYFFGYMIHRLLLAGMERRELDDRDHFGKKRLDLAGPLLANLFRM 187

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKLTRDV  Y+QKCV+  KD NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGV
Sbjct: 188 LFRKLTRDVYRYLQKCVETHKDFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGV 247

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 248 SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 307

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VGS + P+++FLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L+KT
Sbjct: 308 SLMATISVGSLSLPVIDFLEEWGLESLEENAHSATP-TTKVFVNGVWMGVHRDPANLIKT 366

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-- 297
           +++LRR+ D++ EV +VRDIR +ELR+YTD GR  RPLF+VE Q L + K+ I  L +  
Sbjct: 367 IKKLRRKDDIHPEVSIVRDIRERELRLYTDAGRVCRPLFVVEDQXLAVTKKHINMLTRGT 426

Query: 298 RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD-- 348
            ++ E+  W++L+  G +EY+D EEEET MI MT  DL  +RL       H E++  D  
Sbjct: 427 DDNGEEFKWNNLIKSGVVEYLDAEEEETVMICMTPEDLENSRLQSSGINPHAEDSDFDPA 486

Query: 349 ------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
                       T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY TN
Sbjct: 487 ARLKASSGLNTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYXTN 546

Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
           +  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 547 FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 606

Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
           SIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT 
Sbjct: 607 SIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTG 666

Query: 517 VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
           V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN +G +FV
Sbjct: 667 VNGEDIIIGKTAPIPPDSEELGQRTRIHTRRDVSTPLKSTESGIVDQVLITTNHEGQKFV 726

Query: 575 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
           KVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHAIPSRMTIG
Sbjct: 727 KVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIG 786

Query: 635 QLIECIMGKVAAHMG 649
            L+EC++ KVA  +G
Sbjct: 787 HLVECLLSKVATLIG 801


>gi|119644045|gb|ABL85603.1| RNA polymerase II second largest subunit [Hypotrachyna caraccensis]
          Length = 708

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/708 (62%), Positives = 541/708 (76%), Gaps = 41/708 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+
Sbjct: 1   DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  R
Sbjct: 181 NATKIFVNGVWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCR 240

Query: 276 PLFIVE-------KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEY 317
           PLF+++       +  L++ K  +  L+  RE+     P+     D GW  LV +G +EY
Sbjct: 241 PLFVIDNDPRSSNRGNLVLTKEHVQKLELDRENWATTEPDVREEADMGWQGLVKEGVVEY 300

Query: 318 IDTEEEETTMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHP 357
           +D EEEET MI MT  DL     +QA     EA  D               T+THCEIHP
Sbjct: 301 VDAEEEETIMIVMTPEDLEISRQLQAGFDMPEANPDELNKRVKAPMNPTAHTWTHCEIHP 360

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG    NY+ RMDT+A +LYYPQKPL T
Sbjct: 361 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXSYNYEQRMDTMANILYYPQKPLAT 420

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 421 TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 480

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481 IGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEEL 540

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541 GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDAT
Sbjct: 601 QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L   IFLGPTYYQ
Sbjct: 661 PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPTYYQ 708


>gi|52699776|gb|AAU86950.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           hilaris]
          Length = 726

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/723 (61%), Positives = 543/723 (75%), Gaps = 54/723 (7%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YI+VG+ + PI++F+ +   E  EE  P   P ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQRNMEVLEEYEPQRSPNATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+H DP  LV T++ +RR   ++ EV +VRDIR +E +I+TD GR  RPLF+++  
Sbjct: 182 GVWVGVHSDPVHLVNTVQAVRRGHMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDND 241

Query: 284 -------RLLIKKRDIIALQQRE--SPE-----------------DG---GWHDLVAKGF 314
                   L++ K  I  L+  +  S E                 DG   GW+ L+ +G 
Sbjct: 242 PKSPRCGSLVLTKEHINKLEDYKDLSAEMQEKIREKEEVEKEVKEDGTPYGWNGLIKRGV 301

Query: 315 IEYIDTEEEETTMISMTINDLVQARL----------------------HPEEAYADTYTH 352
           +EY+D EEEET MI MT  DL  +R                        P    A T+TH
Sbjct: 302 VEYVDAEEEETVMIVMTPEDLEISRQLQAGYVLPEPSDTSEALMKRVKAPMNPTAHTWTH 361

Query: 353 CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 412
           CEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +T Y+ RMDT+A +LYYPQ
Sbjct: 362 CEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVXLTXYEQRMDTMANILYYPQ 421

Query: 413 KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 472
           KPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY 
Sbjct: 422 KPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYT 481

Query: 473 DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 532
           D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ 
Sbjct: 482 DQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAP 541

Query: 533 D-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
           D E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF
Sbjct: 542 DAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKF 601

Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
           +SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G 
Sbjct: 602 ASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGF 661

Query: 651 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           EGDATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD
Sbjct: 662 EGDATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 721

Query: 711 DKI 713
            KI
Sbjct: 722 XKI 724


>gi|52699825|gb|AAU86974.1| DNA-dependent RNA polymerase II second largest subunit [Lasallia
           pennsylvanica]
          Length = 716

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/716 (61%), Positives = 536/716 (74%), Gaps = 40/716 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLK
Sbjct: 1   DHFGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTLTNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPQRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPAHLVSTVQSLRRRSLISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVEKQ-------RLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDT 320
           +++          L++ K  I  L+  +       PE+      GW  LV +G +EY+D 
Sbjct: 241 VIDNDPKSPNNGNLVLTKEHINRLEDDKDLGPDTDPEERTAKYMGWEGLVKQGVVEYVDA 300

Query: 321 EEEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLIL 361
           EEEET MI MT  DL  +R                     P    A T+THCEIHPS+IL
Sbjct: 301 EEEETVMIVMTPEDLEISRQIQAGYTMPETTDDPNKRVKAPMNPTAHTWTHCEIHPSMIL 360

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           G+CASIIPFPDHNQSPRNTYQSAMG QAMG+++TN+  RMDT+A +LYYPQ PL TTR+M
Sbjct: 361 GICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNFDQRMDTMANILYYPQXPLATTRSM 420

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D+EK++G  
Sbjct: 421 EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDQEKRIGMS 480

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 540
           V E F +P RS+T+  +HG+Y KLDDDG   PG RV GEDVIIGKT PI+   E  GQ +
Sbjct: 481 VVEQFEKPMRSDTLRXKHGTYXKLDDDGXVAPGVRVXGEDVIIGKTAPIAPXAEELGQRT 540

Query: 541 R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           + + +RD S  LR +E G VDQV LT NA+GLRFVKVR R+   PQIGDKF+SRHGQKGT
Sbjct: 541 KSHIKRDVSXPLRSTEXGXVDQVXLTXNAEGLRFVKVRXRTTXXPQIGDKFASRHGQKGT 600

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           +G+TY  EDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601 IGITYRXEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECXLXKVSSLRGFEGDATPFTE 660

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI +
Sbjct: 661 VTVDSVSRXLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 716


>gi|113957206|gb|ABI49109.1| RNA polymerase II second largest subunit [Pyxine subcinerea]
          Length = 709

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/709 (61%), Positives = 539/709 (76%), Gaps = 41/709 (5%)

Query: 46  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 105
           RLDLAGPLL GLFR LF KL +DV  Y++ C++N ++ NL   +K+ TIT+GLKYSLATG
Sbjct: 1   RLDLAGPLLAGLFRTLFNKLNKDVEKYLKNCIENNREFNLTLGVKSTTITNGLKYSLATG 60

Query: 106 NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 164
           NWG Q  A+ ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61  NWGEQKKASSSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALM Y++VG+ +  I+EFL     E  EE  P   P ATKIFVNG
Sbjct: 121 AETPEGQACGLVKNLALMCYVSVGTPSEGIVEFLLSRQMEPLEEYDPLASPHATKIFVNG 180

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ- 283
            WVGIHR+P  LV  ++ LRRR  +  EV ++RDIR +E +I TD GR  RPLF+VE   
Sbjct: 181 VWVGIHRNPAHLVLAVQSLRRRHVIEHEVSLIRDIRDREFKILTDQGRVLRPLFVVENDA 240

Query: 284 ------RLLIKKRDIIALQ-QRESPEDG----------GWHDLVAKGFIEYIDTEEEETT 326
                  L++ K  +  L+  R+ P D           GWH L+  G +EY+D EEEET 
Sbjct: 241 KEQNYGNLVLTKEHVEKLEADRDVPLDMDKEEREQLTFGWHGLINAGVVEYVDAEEEETI 300

Query: 327 MISMTINDLVQAR------LHPEE--------------AYADTYTHCEIHPSLILGVCAS 366
           MI MT  DL  +R      + PEE                A T+THCEIHPS+ILG+CAS
Sbjct: 301 MIVMTPYDLNVSRQIQAGYVLPEENDENPNRRVKAPINPTAHTWTHCEIHPSMILGLCAS 360

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQS MGKQAMG+++TN+  RM+T++++LYYPQKPL TTR+ME L F
Sbjct: 361 IIPFPDHNQSPRNTYQSXMGKQAMGVFLTNFDQRMETMSHILYYPQKPLATTRSMEFLKF 420

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EKK+G    E F
Sbjct: 421 RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKIGMYTMEQF 480

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 544
            +P RS+T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +
Sbjct: 481 EKPLRSDTLKLKHGTYEKLDDDGIIIPGARVSGEDIIIGKTAPIAPDAEELGQRTKLHNK 540

Query: 545 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
           RD S  LR +E+G+VDQVLLT N++GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY
Sbjct: 541 RDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 600

Query: 605 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+
Sbjct: 601 RQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDS 660

Query: 665 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           +S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 VSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 709


>gi|52699890|gb|AAU87006.1| DNA-dependent RNA polymerase II second largest subunit
           [Strangospora pinicola]
          Length = 703

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/702 (62%), Positives = 537/702 (76%), Gaps = 36/702 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+N K+ NL  A+K+ T+T+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVENNKEFNLTLAVKSTTLTNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLSSPNATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+HRDP  LV T+  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+++++
Sbjct: 182 GVWVGVHRDPAHLVSTVLNLRRRGLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVIDQK 241

Query: 284 --RLLIKKRDIIALQQ---------RESPEDG--GWHDLVAKGFIEYIDTEEEETTMISM 330
             +L++ K  I  L++          +  ED   GW  LV  G +EY+D EEEET MI M
Sbjct: 242 TGQLVLTKGHIAKLEEDKELGLSMDAQEKEDKLMGWQGLVKSGVVEYVDAEEEETIMIVM 301

Query: 331 TINDL-----VQARLHPEEAYAD---------------TYTHCEIHPSLILGVCASIIPF 370
           T +DL     +QA     EA  D               T+THCEIHPS+ILG+CASIIPF
Sbjct: 302 TPDDLDISRQIQAGYSIPEANPDDLNKRVKAPLNPTAHTWTHCEIHPSMILGICASIIPF 361

Query: 371 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 430
           PDHNQSPRNTYQSA        ++TNY+ RMDT++ +LYYPQKPL TT +ME+L FR LP
Sbjct: 362 PDHNQSPRNTYQSAXXXXXXXXFLTNYEARMDTMSNILYYPQKPLATTSSMEYLKFRDLP 421

Query: 431 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 490
           AG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P 
Sbjct: 422 AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQFEKPI 481

Query: 491 RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHS 548
           R+ T  M+HG+YDKLD+DG+  PG R+SGED+IIGKT P++ D E  GQ ++ + +RD S
Sbjct: 482 RNETFKMKHGTYDKLDEDGIVAPGIRISGEDIIIGKTAPMTADAEELGQRTKAHQKRDTS 541

Query: 549 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 608
             LR +E G+VDQVLLTTNA+G+RFVKVR R  ++PQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 542 TPLRTTENGIVDQVLLTTNAEGMRFVKVRTRMTKVPQIGDKFASRHGQKGTIGITYRQED 601

Query: 609 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 668
           MP+T EG+ PDII+NPHAIPSRMTI  LIEC + KV++  G+EGDATPFT+VTVD++SK 
Sbjct: 602 MPFTSEGLVPDIIINPHAIPSRMTIAHLIECQLSKVSSLTGREGDATPFTEVTVDSVSKL 661

Query: 669 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD
Sbjct: 662 LRENGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 703


>gi|52699894|gb|AAU87008.1| DNA-dependent RNA polymerase II second largest subunit [Taphrina
           communis]
          Length = 731

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/729 (59%), Positives = 539/729 (73%), Gaps = 55/729 (7%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G KR+D AGPLL GLFRMLF++LT+D+R Y+ KCVD+GK+ NL  A+K  TIT+GL+
Sbjct: 1   DXXGKKRIDXAGPLLAGLFRMLFKRLTKDIRQYMTKCVDSGKEFNLPLAVKHTTITNGLR 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATG WG Q      R GVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGTWGDQKKQMNARVGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM Y++VGSA+ PI+EFLEEWG E+ E+ +P+    +T
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMSYVSVGSASAPIIEFLEEWGMESLEDYNPSAGRPST 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNG W+G+H DP  LVKTLR LRR+ D++ EV VVRDIR KELR++TD GR  RPLF
Sbjct: 181 KIFVNGVWLGVHSDPGHLVKTLRSLRRKTDISPEVSVVRDIREKELRLFTDAGRVCRPLF 240

Query: 279 IV--------------EKQRLLIKKRDIIALQ-QRESPEDG---GWHDLVAKGFIEYIDT 320
           +V              E   L++KK  +  +   +E PED    GW  +++ G  EY+D 
Sbjct: 241 VVHDDESAESDPTGESEAGSLVLKKEHVQRMAYSKEHPEDEDKFGWSQVLSNGIAEYLDA 300

Query: 321 EEEETTMISMTINDLVQAR------LHPE-EAYADT------------------------ 349
           EEEET MI+MT +DL   +      + PE E  AD                         
Sbjct: 301 EEEETVMIAMTPDDLEATKHMMAGYVEPEVEEPADADERERKIAAEAAKRLRPAVNKAQH 360

Query: 350 -YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 408
            +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG     YQ RMDT+A +L
Sbjct: 361 LWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXXXXYQVRMDTMANIL 420

Query: 409 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 468
           YYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQSSIDRG FRS+F+
Sbjct: 421 YYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGLFRSMFY 480

Query: 469 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 528
           R Y+D E+K+     ++F +P R  TM M+  +YDKL+DDGL  PGTRVSGEDVI+GKT 
Sbjct: 481 RVYQDSEEKIDMNQAQEFEKPTRETTMRMKRSTYDKLEDDGLVAPGTRVSGEDVIVGKTA 540

Query: 529 PISQDEAQ----GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
            + +DE       +++  T+RD S  LR +E G++D+V+++TN+DG +FVKVR+R+ +IP
Sbjct: 541 GLLKDENSADLAARSATQTKRDVSTQLRSTEAGIIDKVMVSTNSDGHKFVKVRIRATKIP 600

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           QIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMT+  L+EC + KV
Sbjct: 601 QIGDKFASRHGQKGTIGVTYRNEDMPFTSEGIVPDLIINPHAIPSRMTVAHLVECQLSKV 660

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
            +  G EGDATPFTDVTV+ +S  L + GY  RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 661 GSLSGFEGDATPFTDVTVEAVSNNLREQGYHSRGFEIMYNGHTGRKLMAQVFLGPTYYQR 720

Query: 705 LKHMVDDKI 713
           LKH+VDDKI
Sbjct: 721 LKHLVDDKI 729


>gi|300394668|gb|ADK11872.1| DNA-directed RNA polymerase II subunit two, partial [Athelia sp.
           HHB-15599]
          Length = 676

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/676 (64%), Positives = 530/676 (78%), Gaps = 25/676 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q
Sbjct: 181 GVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQ 240

Query: 284 RLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
           +L ++K+ +  + +   +  E+  W  LV  G +E +D EEEET MISMT  DL  +RL 
Sbjct: 241 QLALQKKHVHWINRGYDDDNEEFKWEQLVKSGIVELLDAEEEETVMISMTPEDLENSRLQ 300

Query: 342 -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
                                     T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301 LSGVDTTQNDGEFDPAARLKAGTNTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361 SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421 SGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRMKHGTY 480

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481 DKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGI PDI
Sbjct: 541 QVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDI 600

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           I+NPHAIPSRMTIG LIEC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601 IINPHAIPSRMTIGHLIECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLE 660

Query: 681 TMYNGHTGRRLTAMIF 696
            MY+GH+GR+L A ++
Sbjct: 661 VMYHGHSGRKLQAQVY 676


>gi|396941928|gb|AFN89681.1| RNA polymerase II, partial [Spencermartinsiella europaea]
          Length = 687

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/687 (63%), Positives = 531/687 (77%), Gaps = 34/687 (4%)

Query: 41  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 100
           H+G KRLDLAGPLL  LFRMLF+KLTRD+  Y+QKCV+  KD NL  A+K+ TIT+GLKY
Sbjct: 1   HFGKKRLDLAGPLLANLFRMLFKKLTRDIYRYMQKCVETNKDFNLTLAVKSNTITNGLKY 60

Query: 101 SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 159
           SLATGNWG Q  A  ++AGVSQVLNR T++STLSHLRR N+PIGR+GK+A+PRQLHN+ W
Sbjct: 61  SLATGNWGDQKKAMSSKAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKIARPRQLHNTHW 120

Query: 160 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 219
           G++CPAETPEGQACGLVKNL+LM  I+VG+ + PI+ FLEEWG E  E+  P   P AT+
Sbjct: 121 GLVCPAETPEGQACGLVKNLSLMSCISVGTPSQPIVYFLEEWGMEPLEDYVPHASPNATR 180

Query: 220 IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 279
           IFVNG W+G+HRDP  LV T+R LRR+ D++ EV ++RDIR KE RI+TD GR  RPLF+
Sbjct: 181 IFVNGVWIGVHRDPAHLVDTMRALRRKGDISPEVSIIRDIREKEFRIFTDAGRVYRPLFL 240

Query: 280 VE-------KQRLLIKKRDIIAL-QQRESPEDG----GWHDLVAKGFIEYIDTEEEETTM 327
           V+       K  L ++K  I  L    E  E G    GW  LV+ G +EYID EEEET M
Sbjct: 241 VDNDEESDRKGELKLRKEHIYQLLNNEEDAETGEPVFGWSSLVSNGVVEYIDGEEEETIM 300

Query: 328 ISMTINDLVQARL----------HPEEA---------YADTYTHCEIHPSLILGVCASII 368
           I+MT  DL  +R            P+ A          A T+THCEIHPS+ILG+CASII
Sbjct: 301 IAMTPEDLELSRQMQSGVEVSDDDPDPARRVRPAYNPNAQTWTHCEIHPSMILGICASII 360

Query: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 428
           PFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME + FR+
Sbjct: 361 PFPDHNQSPRNTYQSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRSMEFMKFRE 420

Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 488
           LPAG NAIVAI CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +
Sbjct: 421 LPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEK 480

Query: 489 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRD 546
           P R++T+ ++HG+YDKLD+DGL PPG RVSGED+IIGKT PI  D E  GQ S+Y T+RD
Sbjct: 481 PTRADTLRLKHGTYDKLDEDGLIPPGVRVSGEDIIIGKTAPIPPDTEELGQRSKYHTKRD 540

Query: 547 HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 606
            S  LR +E+G+VDQVLLTTN +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  
Sbjct: 541 ASTPLRSTESGIVDQVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRH 600

Query: 607 EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 666
           EDMP+T EG+ PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDATPFTDVTVD IS
Sbjct: 601 EDMPFTSEGVVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDATPFTDVTVDAIS 660

Query: 667 KALHKCGYQMRGFETMYNGHTGRRLTA 693
           K L +  Y  RGFE MYNGHTG++L A
Sbjct: 661 KLLREHKYHSRGFEVMYNGHTGKKLVA 687


>gi|357216643|gb|AET71055.1| RNA polymerase II second largest subunit, partial [Trametes maxima]
          Length = 676

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/677 (64%), Positives = 531/677 (78%), Gaps = 30/677 (4%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIAL---QQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTIND 334
            Q+LL++K+ I  L   ++    ED      W +L+  G IE +D EEEET MI MT  D
Sbjct: 240 NQQLLLQKKHIENLVRGKEEAGKEDPAVIYKWDNLIKDGVIELLDAEEEETVMICMTPED 299

Query: 335 LVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL       H  +   D            T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 300 LENSRLQAAGTDPHANDGEVDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           +VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420 VVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ 
Sbjct: 480 RMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540 TEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + G
Sbjct: 600 EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKG 659

Query: 674 YQMRGFETMYNGHTGRR 690
           YQ RG E MY+GHTGR+
Sbjct: 660 YQSRGLEVMYHGHTGRK 676


>gi|52699796|gb|AAU86960.1| DNA-dependent RNA polymerase II second largest subunit [Cudonia
           circinans]
          Length = 718

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/716 (61%), Positives = 543/716 (75%), Gaps = 42/716 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFR L+++LT DV  Y+Q CV+   + NL  A+K+ TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLAKLFRNLWKRLTGDVYKYLQTCVEKQSEFNLTLAVKSSTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNL+LM Y+TVG+ + PI+EF+ + G +  EE  P   P +T
Sbjct: 121 WGLVCPAETPEGQACGLVKNLSLMCYVTVGTPSDPIVEFMIQRGMDVLEEYEPLRSPNST 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+H  P  LV+ ++ LRR+  ++ EV ++RDIR +E +++TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHSHPARLVRNVQGLRRQHLISHEVSLIRDIRDREFKVFTDAGRVCRPLF 240

Query: 279 IVE-------KQRLLIKKRDI------------IALQQRESPEDGGWHDLVAKGFIEYID 319
           IVE       K  L++ K  I            +AL+ +      G++ L+  G +EY+D
Sbjct: 241 IVETDEESPNKGNLVLNKDHIKKLEDDQAMPLQMALEVKNKHGYFGFNGLLDSGVVEYVD 300

Query: 320 TEEEETTMISMTINDL-----VQARLH---------------PEEAYADTYTHCEIHPSL 359
            EEEET MI MT  DL     +QA L                P    A  +THCEIHPS+
Sbjct: 301 AEEEETIMIVMTPEDLEISRQIQAGLEQLPDDSGDLNKRVKAPVNPTAHIWTHCEIHPSM 360

Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
           ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR
Sbjct: 361 ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTR 420

Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
           +ME L FR+LPAG NAIVAIACY+GYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G
Sbjct: 421 SMEFLKFRELPAGQNAIVAIACYAGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVG 480

Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ 538
               E F +P+RS+T+ ++  +YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ
Sbjct: 481 MATIESFEKPNRSDTIRLKTATYDKLDEDGIVSPGVRVSGEDIIIGKTAPIAPDAEELGQ 540

Query: 539 ASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
            ++ +T+RD S  LR +E G+VDQVLLTTNADGLRFVKVR+R+ +IPQIGDKF+SRHGQK
Sbjct: 541 RTKAHTKRDASTPLRSTENGIVDQVLLTTNADGLRFVKVRMRTTKIPQIGDKFASRHGQK 600

Query: 598 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
           GTVG+TY QEDMP+T EGI PDII+NPHAIPSRMTI  LIEC + KV+   G EGDATPF
Sbjct: 601 GTVGITYRQEDMPFTREGIVPDIIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPF 660

Query: 658 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           T+VTVD++SK L   GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661 TEVTVDSVSKLLRDHGYQSRGFEIMYNGHTGRKLRAQVFLGPTYYQRLRHMVDDKI 716


>gi|123979364|gb|ABM81507.1| RNA polymerase II second largest subunit [Myelochroa aurulenta]
          Length = 704

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/703 (62%), Positives = 541/703 (76%), Gaps = 41/703 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+GL+YSLAT
Sbjct: 2   KRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLSSPNATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  RPLF+++  
Sbjct: 182 GVWVGVHRDPAHLVGTVQNLRRRGMISHEVSLVRDIRDREFKVFTDAGRVCRPLFVIDNN 241

Query: 284 -------RLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEYIDTEEEET 325
                   L++ K  +  L+  RE+     P+     D GW  LV +G +EY+D EEEET
Sbjct: 242 PSSDTRGNLVLTKEHVQKLEIDRENWATTEPDVRDQTDMGWQGLVKEGVVEYVDAEEEET 301

Query: 326 TMISMTINDLVQAR----------LHPEE----------AYADTYTHCEIHPSLILGVCA 365
            MI MT  DL  +R           +P+E            A T+THCEIHPS+ILG+CA
Sbjct: 302 IMIVMTPEDLEISRQLQAGYAMPEANPDELNKRVKAPMNPTAHTWTHCEIHPSMILGICA 361

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 362 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLK 421

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E 
Sbjct: 422 FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQ 481

Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 543
           F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ + 
Sbjct: 482 FEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHI 541

Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
           +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 542 KRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 601

Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
           Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDATPFT+VTVD
Sbjct: 602 YRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDATPFTEVTVD 661

Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           ++S+ L + GYQ RGFE MYNGHTGR+L   IFLGPTYYQRL+
Sbjct: 662 SVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPTYYQRLR 704


>gi|103001177|gb|ABF71496.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           molybdina]
          Length = 709

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/707 (62%), Positives = 534/707 (75%), Gaps = 40/707 (5%)

Query: 47  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 106
           LDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TI++GLKYSLATGN
Sbjct: 1   LDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTISNGLKYSLATGN 60

Query: 107 WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 165
           WG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPA
Sbjct: 61  WGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 120

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG 
Sbjct: 121 ETPEGQACGLVKNLALMCYITVGTPSEPIIEFMVQRNMEVLEEYEPQRSPNATKVFVNGV 180

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-- 283
           WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE    
Sbjct: 181 WVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPK 240

Query: 284 -----RLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEETTM 327
                 L++ K  I  L+  ++ P             GW  LV  G +EY+D EEEET M
Sbjct: 241 STHCGNLVLTKEHINKLEDDKDLPPTAEGEEKDAKFFGWDGLVNNGVVEYVDAEEEETVM 300

Query: 328 ISMT-------------------INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 368
           I MT                    +DL++    P    A T+THCEIHPS+ILG+CASII
Sbjct: 301 IVMTPEDLEISRQIQAGYTIPETSDDLIKRVKAPMNPTAHTWTHCEIHPSMILGICASII 360

Query: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 428
           PFPDHNQSPRNTYQSAMGKQAMG         MDT+A +LYYPQKPL TTR+ME L FR+
Sbjct: 361 PFPDHNQSPRNTYQSAMGKQAMGXXXXXXXXXMDTMANILYYPQKPLATTRSMEFLKFRE 420

Query: 429 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 488
           LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +
Sbjct: 421 LPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGMSVVEQFEK 480

Query: 489 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRD 546
           P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ + +RD
Sbjct: 481 PMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLHVKRD 540

Query: 547 HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 606
            S  LR +E G+VDQVL+TTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY Q
Sbjct: 541 CSTPLRSTENGIVDQVLITTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQ 600

Query: 607 EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 666
           EDMP+T +G+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++S
Sbjct: 601 EDMPFTKDGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVS 660

Query: 667 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           K L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 661 KLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 707


>gi|103001369|gb|ABF71504.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 699

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/699 (62%), Positives = 534/699 (76%), Gaps = 40/699 (5%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 121 LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 180

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181 FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 281 EKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 322
           +          L++ K         +D+ A+   E  E    GW  LV  G +EY+D EE
Sbjct: 241 DNDPKSTNCGNLVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEE 300

Query: 323 EETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGV 363
           EET MI MT  DL  +R                     P    A T+THCEIHPS+ILG+
Sbjct: 301 EETVMIVMTPEDLEISRQIQAGYAMPETSDDPNKRVKAPMNPTAHTWTHCEIHPSMILGI 360

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 361 CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEF 420

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 421 LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 480

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 541
           E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 481 EQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKL 540

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           + +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 541 HVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 600

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP+T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601 ITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
           VD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPT
Sbjct: 661 VDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 699


>gi|52699837|gb|AAU86980.1| DNA-dependent RNA polymerase II second largest subunit [Morchella
           esculenta]
          Length = 708

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/710 (61%), Positives = 541/710 (76%), Gaps = 36/710 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G  RLDLAGPLL GLFR L++KLT+DV  Y++KCV+ G+D NL  A+K+ TIT+GLK
Sbjct: 1   DXXGXXRLDLAGPLLAGLFRTLWKKLTKDVYKYLEKCVETGRDFNLTLAVKSNTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNL+LM YIT+G+  YP+++FL     E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLSLMSYITIGTPGYPLVDFLSSNDMELLEEYEPQRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG HRDP ML K ++ +RR+  VN EV ++RDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGTHRDPLMLHKVVQDVRRQGVVNHEVSIIRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQRES---PEDGGWHDLVAKGFIEYIDTEEEETTMI 328
           +++       + +L+++K  I  L+   +    +  GW  L+  G +EY+D EEEET MI
Sbjct: 241 VIDNDPRSERRGQLVLQKEHIEKLEDDHALPMEDRFGWEGLLFSGTVEYLDAEEEETVMI 300

Query: 329 SMTINDL---------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASI 367
            MT  DL                     V+A ++P  A+  T+THCEIHPS+ILG+CASI
Sbjct: 301 VMTPEDLDMSRQMQLGYEEPKDEFSAKRVKAPINPHTAH--TWTHCEIHPSMILGICASI 358

Query: 368 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 427
           IPFPDHNQSPRNTYQSAMG QAMG     +  RMDT+A +LYYPQKPL TTR+ME+L FR
Sbjct: 359 IPFPDHNQSPRNTYQSAMGXQAMGXXXXXFSERMDTMANILYYPQKPLATTRSMEYLKFR 418

Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
           +LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E+F 
Sbjct: 419 ELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYMDQEKRIGMQVVEEFE 478

Query: 488 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRR 545
           +P R+NT+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI+ D +  GQ  +Y T+R
Sbjct: 479 KPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPITPDVDEMGQRQKYHTKR 538

Query: 546 DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 605
           D S  LR +E G+VDQV+LTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGTVG+TY 
Sbjct: 539 DVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTVGITYR 598

Query: 606 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 665
           QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTV+++
Sbjct: 599 QEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVESV 658

Query: 666 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           S  L + GYQ RGFE MYNG+TGR+L   +FLGPTYYQR +HMV  KI +
Sbjct: 659 STLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPTYYQRXRHMVXXKIXA 708


>gi|119644059|gb|ABL85604.1| RNA polymerase II second largest subunit [Hypotrachyna degelii]
          Length = 708

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/708 (62%), Positives = 541/708 (76%), Gaps = 41/708 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DD DH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+
Sbjct: 1   DDSDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  R
Sbjct: 181 NATKIFVNGVWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCR 240

Query: 276 PLFIVE-------KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEY 317
           PLF+++       +  L++ K  +  L+  RE+     P+     D GW  LV +G +EY
Sbjct: 241 PLFVIDNDPRSSNRGNLVLTKEHVQKLELDRENWATTEPDVREETDMGWQGLVEEGVVEY 300

Query: 318 IDTEEEETTMISMTINDLVQAR----------LHPEE----------AYADTYTHCEIHP 357
           +D EEEET MI MT  DL  +R           +P+E            A T+THCEIHP
Sbjct: 301 VDAEEEETIMIVMTPEDLEISRQLQAGYAMPEANPDELNKRVKAPMNPTAHTWTHCEIHP 360

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG    NY+ RMDT+A +LYYPQKPL T
Sbjct: 361 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXSFNYEQRMDTMANILYYPQKPLAT 420

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 421 TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 480

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481 IGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEEL 540

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541 GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDAT
Sbjct: 601 QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L   IFLGPTYYQ
Sbjct: 661 PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPTYYQ 708


>gi|83415493|gb|ABC17954.1| RNA polymerase II second largest subunit, partial [Phycomyces
           blakesleeanus]
          Length = 801

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/649 (65%), Positives = 520/649 (80%), Gaps = 26/649 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPHVGT    ET+K+Y+FGY+IHRLLL AL RR  DDRDHYG KR+DLAGPL+ GLFR+
Sbjct: 156 LLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRL 215

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF+KLT+DV  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  A   RAGV
Sbjct: 216 LFKKLTKDVAKYLQKCIESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGV 275

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 276 SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 335

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           ALM YI+VGSAA P++ FLEEW  EN EE+S   IP ATK+FVNG W+G+HRDP  LV +
Sbjct: 336 ALMSYISVGSAATPLIMFLEEWAMENLEELSANNIPDATKVFVNGVWIGVHRDPGELVNS 395

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
           L+ +RR VD++ EV +VRDIR KELR+YTD GRC RPLF+V+ Q+L + +  +  LQ   
Sbjct: 396 LKSMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFLVQDQQLRLTRDHLSRLQ--- 452

Query: 300 SPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP-------EE------- 344
            PED   W D+++ G +EY+D +EEET MI MT  DLV+AR+         EE       
Sbjct: 453 DPEDSYRWQDMISDGIVEYVDADEEETAMICMTPEDLVEARMAAQFGAPLQEERDLASRV 512

Query: 345 -----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 399
                AY+ T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ 
Sbjct: 513 KSQTGAYSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQT 572

Query: 400 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 459
           RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NA+VAI CYSGYNQEDSVIMNQSSID
Sbjct: 573 RMDTMANILYYPQKPLTTTRSMEFLRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSID 632

Query: 460 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 519
           RG FRSLFFR+Y D EKK G +  E+F +P R +T+ ++HG+Y+KL++DGL  PGTRVSG
Sbjct: 633 RGLFRSLFFRTYMDAEKKAGMMFMEEFEKPTRDSTLRLKHGTYEKLEEDGLIAPGTRVSG 692

Query: 520 EDVIIGKTTPI-SQDEAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 577
           +D+IIGKT PI ++ E  GQ ++ + + D S  LR +ETG+VDQV+LTTN DGL+FVKVR
Sbjct: 693 DDIIIGKTAPIPAESEELGQRTQTHNKHDASTPLRSTETGIVDQVMLTTNQDGLKFVKVR 752

Query: 578 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           VRS R+PQ+GDKF+SRHGQKGT+GMTY QED P++ EGITPD+I+NPHA
Sbjct: 753 VRSTRVPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITPDLIINPHA 801


>gi|258562146|gb|ACV81795.1| RNA polymerase II second largest subunit [Wallemia sebi]
          Length = 680

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/682 (63%), Positives = 532/682 (78%), Gaps = 29/682 (4%)

Query: 72  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 130
           Y+QKCV+  K+ NL  A+KA TIT+GLKYSLATGNWG Q      RAGVSQVLNR T+AS
Sbjct: 1   YMQKCVETHKEFNLNQAVKANTITNGLKYSLATGNWGDQKKFMQARAGVSQVLNRYTFAS 60

Query: 131 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 190
           TLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  ++ GS+
Sbjct: 61  TLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMANVSTGSS 120

Query: 191 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 250
           + PI +FL+EWG E  EE +P       K+FVNG W+G+HRDP  LVKTLR+LRR  D+ 
Sbjct: 121 SAPIQDFLQEWGMEELEEFNPR--SNQVKVFVNGVWIGVHRDPTNLVKTLRKLRREGDIQ 178

Query: 251 TEVGVVRDIRLKELRIYTDYGRCSRPLFIV--EKQRLLIKKRDIIALQQRESPEDG---- 304
            EV VVRD+R KE++++TD GR  RPLF+V  E Q+L I K  I  ++   + ED     
Sbjct: 179 HEVSVVRDVREKEIKVFTDAGRVCRPLFLVDEETQQLEINKSHIAKIEAHTNGEDEDPDQ 238

Query: 305 --GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--LHPEEAYAD------------ 348
              W  L++ G +E +D EEEET MI MT  +L  +R    P++   D            
Sbjct: 239 PYNWAKLMSDGVMELLDAEEEETVMICMTPEELEHSRQGFIPQDEEFDPAARIKSASTLD 298

Query: 349 --TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
             T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ+AMGKQAMG+++TN+Q RMDTL+ 
Sbjct: 299 THTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQAAMGKQAMGVHLTNFQQRMDTLSN 358

Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
           +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS+IDRG FRS+
Sbjct: 359 ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSI 418

Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 526
           F+RSY D EKK+GT++ E+F +P R   + M+HG+YDK+++DGL  PGT V+G+D+IIGK
Sbjct: 419 FYRSYMDTEKKVGTMLLEEFEKPTRETCLRMKHGTYDKIENDGLIAPGTAVTGDDIIIGK 478

Query: 527 TTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 584
           T PI  D E  GQ ++ +T+RD S  L+ +E G+VDQVL+TTNADGL+F KVR+RS RIP
Sbjct: 479 TAPIPPDSEELGQRTKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKFSKVRMRSTRIP 538

Query: 585 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 644
           QIGDKF+SRHGQKGT+G+TY  EDMP+T +GITPD+I+NPHAIPSRMTIG L+EC++ KV
Sbjct: 539 QIGDKFASRHGQKGTIGITYRNEDMPFTSDGITPDLIINPHAIPSRMTIGHLVECLLSKV 598

Query: 645 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           A   G EGDATPFT+VTV++IS  LH+ GYQ RG E MYNGHTGR+L A +++GPTYYQR
Sbjct: 599 ATLQGSEGDATPFTEVTVESISSILHEKGYQKRGLEVMYNGHTGRKLQAQVYIGPTYYQR 658

Query: 705 LKHMVDDKIHSRGRGPVQILTR 726
           LKHMVDDKIH+R RGPVQILTR
Sbjct: 659 LKHMVDDKIHARARGPVQILTR 680


>gi|396941813|gb|AFN89624.1| RNA polymerase II, partial [Cyniclomyces guttulatus]
          Length = 753

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/714 (61%), Positives = 539/714 (75%), Gaps = 31/714 (4%)

Query: 3   PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 62
           PH    +  E++KA+  GY+I+RLLLCAL R+ +DDRDH+G K   LAGPLLG LF+ LF
Sbjct: 40  PHXXQLEXFESRKAFXLGYMINRLLLCALDRKDQDDRDHFGXKXXXLAGPLLGQLFKTLF 99

Query: 63  RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQ 121
           RKLTRD+  Y+Q+ V+   D N++ AI AKTITS LKY+LATGNWG Q  A  +RAGVSQ
Sbjct: 100 RKLTRDIFRYMQRTVEEANDFNMKLAIXAKTITSXLKYALATGNWGXQKKAMSSRAGVSQ 159

Query: 122 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 181
           VLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+L
Sbjct: 160 VLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSL 219

Query: 182 MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 241
           M  I+VG+   PI+ F  EWG E  E+  P   P A+++ VNG W G+HR+P  L++TLR
Sbjct: 220 MSCISVGTDPMPIITFXSEWGMEPLEDYVPHQSPDASRVXVNGVWHGVHRNPARLMETLR 279

Query: 242 RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR------LLIKKRDIIAL 295
            LRR+ D+N EV ++RDIR KEL+ +TD GR  RPLFIVE  +      L ++K  I  L
Sbjct: 280 TLRRKGDINPEVSMIRDIREKELKXFTDAGRVYRPLFIVEDDKELGHKELKVRKGHINKL 339

Query: 296 QQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHPEE 344
              E  + +GG        W  L+ +G +EYID EEEET +I+M   DL  VQ    P +
Sbjct: 340 LTTEYQDIEGGFEDVEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPVQEDEEPTD 399

Query: 345 -----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 393
                       +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG++
Sbjct: 400 DLDPAKRIKAVQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF 459

Query: 394 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 453
           +TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+ PAG NAIVAIACYSGYNQEDS+IM
Sbjct: 460 LTNYNVRMDTMANILYYPQKPLGTTRSMEYLKFREXPAGQNAIVAIACYSGYNQEDSMIM 519

Query: 454 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 513
           NQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKL  DGL  P
Sbjct: 520 NQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPHRTNTLRMKHGTYDKLXXDGLIAP 579

Query: 514 GTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGL 571
           G RVSGED+IIGKTTP S DE + GQ + Y ++RD S  LR +E G++DQVL+TTN DGL
Sbjct: 580 GVRVSGEDIIIGKTTPXSPDEEELGQRTAYHSKRDASTPLRSTENGIIDQVLITTNQDGL 639

Query: 572 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 631
           +FVKVRVR+ +IPQIGDKF+SRHGQKGTVG+TY +EDMP+T EGI PD I+NPHAIPSRM
Sbjct: 640 KFVKVRVRTTKIPQIGDKFASRHGQKGTVGITYRREDMPFTAEGIVPDXIINPHAIPSRM 699

Query: 632 TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 685
           T+  LIEC++ KVAA  G EGDA+PFT++TV+ ISK L + GYQ RGFE M NG
Sbjct: 700 TVAHLIECLLSKVAAISGNEGDASPFTNITVEGISKLLREHGYQSRGFEVMXNG 753


>gi|120561279|gb|ABM27024.1| RNA polymerase II second largest subunit, partial [Monosiga
           brevicollis]
          Length = 904

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/751 (58%), Positives = 545/751 (72%), Gaps = 17/751 (2%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           MLPH+G G  CE  KA++ GY++HR L  AL RR  DDRDHYGNKRLDLAG L+  LFR 
Sbjct: 160 MLPHIGVGPQCEQAKAFFLGYMVHRTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRT 219

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LF++LT+ +   V   V+      +   +  + + SGL+YSLATGNWG Q  A   RAGV
Sbjct: 220 LFKQLTKKLTRKVTDLVNRNHKFMVITLLDVEILGSGLRYSLATGNWGDQKKAHEARAGV 279

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNRLT+ASTLSHLRRLNSPI R GK+AKPRQLHN+ WG +CPAETPEG A GLVKNL
Sbjct: 280 SQVLNRLTFASTLSHLRRLNSPIDRTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNL 339

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEI-SPAVIPQATKIFVNGCWVGIHRDPEMLVK 238
           +LM  +TVGS   P+ + L   G +  + + S + I  ATK+FVNG WVGIH  P+ LV 
Sbjct: 340 SLMASLTVGSDDTPVHDLLGASGLDYLDRLPSRSAIKTATKVFVNGNWVGIHSHPDELVT 399

Query: 239 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-----RLLIKKRDII 293
           T+R++RR   V +EV + R+IR +E+ I TD GR +RPL IV K      R  +K   ++
Sbjct: 400 TMRQMRRAHSVASEVSIFRNIREREVHIVTDSGRTTRPLLIVNKDDANRCRFALKNSHVM 459

Query: 294 ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE---AYADTY 350
           AL+     +   W  LV +G +EYID  EEETTMI+M  +D +     P+    +Y +TY
Sbjct: 460 ALRN----DQMSWTHLVQRGVVEYIDVNEEETTMIAMYGHDPLALLALPDSNTTSYCNTY 515

Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
           THCEIHPS+IL +CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYY
Sbjct: 516 THCEIHPSMILSICASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYY 575

Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
           PQ+PLV TR+M +L F +LPAGINAIV I  Y+GYNQEDSVIMN+ S++RG FRS+F+RS
Sbjct: 576 PQRPLVQTRSMNYLRFAELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFRSVFYRS 635

Query: 471 YR-DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
           Y   E  + G ++K D  +P R N +GMR  +YDKL+DDG+  PG RVSG+D I+G+   
Sbjct: 636 YAASEHSERGEIIKID--KPSRENCIGMRRANYDKLEDDGIVAPGIRVSGDDAIVGRLLE 693

Query: 530 ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 589
           + +   Q    R+ +RD S+ LR SE+G++D V+++ N  G +FVK+RVRSVR PQIGDK
Sbjct: 694 LPEATRQASGGRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGDK 753

Query: 590 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 649
           F+SRHGQKGT GM Y QEDMP+   G+ PDIIVNPHAIPSRMTIG LIEC++GK A+H G
Sbjct: 754 FASRHGQKGTCGMQYAQEDMPFAASGVVPDIIVNPHAIPSRMTIGHLIECLLGKSASHSG 813

Query: 650 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
             GDATPFT V V +++  L    +Q  G E MYNG TGR++ A +FLGPTYYQRLKHMV
Sbjct: 814 TIGDATPFTKVNVTDVADILEGYNFQRYGNEVMYNGFTGRKMQAQVFLGPTYYQRLKHMV 873

Query: 710 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           DDKIH+R RGP+Q LTRQP EGRSRDGGLRF
Sbjct: 874 DDKIHARARGPLQNLTRQPMEGRSRDGGLRF 904


>gi|52699898|gb|AAU87010.1| DNA-dependent RNA polymerase II second largest subunit [Thamnolia
           subuliformis]
          Length = 716

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/716 (61%), Positives = 541/716 (75%), Gaps = 46/716 (6%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G KRLDLAG L+ GLFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GLK
Sbjct: 1   DXXGKKRLDLAGXLMAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM  +TVGS + PI++F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQRNMEILEEYEPLRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T+  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPAHLVSTVMSLRRRGLISHEVSLIRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 320
           +++       K  L++ K  +  L+  ++ P D           GW  L+ +G +EY+D 
Sbjct: 241 VIDNDAKSPNKGSLVLTKELVNRLEDDKDLPADMDPDEKAAKTMGWDGLIKRGVVEYLDA 300

Query: 321 EEEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPS 358
           EEEET MI MT  DL                      V+A L+P    A T+THCEIHPS
Sbjct: 301 EEEETVMIVMTPEDLDISRQLQAGYQMPETTDDPNKRVKAPLNPT---AHTWTHCEIHPS 357

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG   TN+  RMDT+  +LYYPQKPL TT
Sbjct: 358 MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXXTNFDERMDTMTNILYYPQKPLATT 417

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D+EK++
Sbjct: 418 RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRVYTDQEKRV 477

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 537
           G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  G
Sbjct: 478 GMSVVEMFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELG 537

Query: 538 QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           Q ++ + +RD S  LR +E G+VD+VLLTTN +GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 538 QRTKLHIKRDVSTPLRSTENGLVDKVLLTTNHEGLRFVKVRMRTTKIPQIGDKFASRHGQ 597

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATP
Sbjct: 598 KGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATP 657

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           FT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD K
Sbjct: 658 FTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXK 713


>gi|124263396|gb|ABH09761.2| RNA polymerase II second largest subunit [Urocystis colchici]
          Length = 707

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/708 (62%), Positives = 540/708 (76%), Gaps = 34/708 (4%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPL+  LFRMLFRKLTRD+  ++Q+CV+  K+ ++Q A+K+ TIT+GL+YSL
Sbjct: 1   GKKRLDLAGPLMASLFRMLFRKLTRDIYRHLQRCVEEHKEFHIQAAVKSSTITNGLRYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VG+ + PI+EFLEE+G ++  ++      +ATK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSNISVGTPSAPIIEFLEEFGLDSLVDMQ-VTNAKATKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G H DP  LV TLR LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIV 
Sbjct: 180 VNGVWMGTHDDPGQLVDTLRDLRRKDDISHEVSVVRDIREKELRLYTDAGRVLRPLFIVN 239

Query: 282 --KQRLLIKKRDIIAL-QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ- 337
                LLIKK  +  L Q  E  E+  W  LV +G IEY+D EEEET MI M+  DL Q 
Sbjct: 240 PMDMTLLIKKHHVAMLGQTTELGEEFRWTQLVQQGVIEYLDAEEEETVMICMSPTDLEQS 299

Query: 338 ------------------ARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
                             ARL     +A DT+THCEIHP++ILG+CASIIPFP       
Sbjct: 300 REYKARNGQMPAETADPSARLKSPHTFAPDTWTHCEIHPAMILGICASIIPFPXXXXXXX 359

Query: 379 NT-------YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
                    YQSAMGKQ+MG+Y+TNYQ RMDT+A +LYYPQKPL TTR+MEHL FR+LPA
Sbjct: 360 XXXXXXXXXYQSAMGKQSMGVYLTNYQMRMDTMANILYYPQKPLATTRSMEHLRFRELPA 419

Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
           G NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y  EEKK+G ++ E+F +P R
Sbjct: 420 GQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRAYMAEEKKVGVMIMEEFEKPSR 479

Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 549
            NT+ ++HG+YDK+D DG+ PPGTRVSG+D+IIGKT P+  D E  G  S+ +T++D SI
Sbjct: 480 DNTIRLKHGTYDKIDADGMVPPGTRVSGDDIIIGKTAPLPPDSEELGLRSKTHTKKDVSI 539

Query: 550 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 609
           SL+ +E G++DQVLLTTNA+G +FVKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDM
Sbjct: 540 SLKSTENGIIDQVLLTTNANGNKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDM 599

Query: 610 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           P+T EG+TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGDATPFT++TV+ +S  L
Sbjct: 600 PFTSEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTELTVEAVSSIL 659

Query: 670 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
              GY  RG E MYNGHTGR+L A  +LGPTYYQRLKHMVDDKIHSR 
Sbjct: 660 RGLGYHSRGLEVMYNGHTGRKLQAQCYLGPTYYQRLKHMVDDKIHSRA 707


>gi|402591318|gb|EJW85248.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
          Length = 641

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/650 (65%), Positives = 508/650 (78%), Gaps = 14/650 (2%)

Query: 182 MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 241
           M YI+VGS   PILEFLEEW  EN EE++P  I  ATKIFVNG WVGIHRDPE L+ TL+
Sbjct: 1   MAYISVGSLPEPILEFLEEWSMENLEEVAPTAIADATKIFVNGAWVGIHRDPEQLMTTLK 60

Query: 242 RLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
           +LRR +D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L +K++ I  L+    
Sbjct: 61  KLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDNSY 120

Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
                W +LVA G +E ID  EEET M++M   DL          Y DTYTHCEIHP++I
Sbjct: 121 T----WSELVAGGVVELIDAMEEETVMLAMMPEDLKAG------GYCDTYTHCEIHPAMI 170

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTTR+
Sbjct: 171 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRS 230

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           ME+L F +LPAGINAIVAI  Y+GYNQEDS+IMNQS IDRG FRS+F+RSYRD+E  +  
Sbjct: 231 MEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQEANLDN 290

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQ 538
             +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P ++D+    
Sbjct: 291 ANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLDAA 350

Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
             RYT++D S  LR SETG+VDQV+LT N DG +FVK+RVRSVR+PQIGDKF+SRHGQKG
Sbjct: 351 IKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQKG 410

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           T+GM Y QEDMP+T EGITPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATPF 
Sbjct: 411 TMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFN 470

Query: 659 D-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
           D V V  IS  L + GY +RG E MYNGHTGR+LT  +FLGPTYYQRLKHMVDDKIHSR 
Sbjct: 471 DTVNVQKISNLLQEYGYHLRGNEIMYNGHTGRKLTVQVFLGPTYYQRLKHMVDDKIHSRA 530

Query: 718 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
           RGPVQ++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V++C +CG
Sbjct: 531 RGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYICNNCG 590

Query: 778 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
           LI +ANL+ NSFEC+ C+NKT +    IPYACKLLFQELM+M+IAPR++ 
Sbjct: 591 LIVVANLRTNSFECKACRNKTQVSAFRIPYACKLLFQELMSMSIAPRLMV 640


>gi|113957191|gb|ABI49106.1| RNA polymerase II second largest subunit [Diploschistes
           cinereocaesius]
          Length = 709

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/709 (61%), Positives = 538/709 (75%), Gaps = 40/709 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPL+  LFR LF +LT+DV  Y+QKC++  +D N+   +K+ T+T+GLKYSLAT
Sbjct: 1   KRLDLAGPLMASLFRSLFNRLTKDVLKYLQKCIEGNRDFNIALGVKSTTLTNGLKYSLAT 60

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNW  Q  AA  +AGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WG++C
Sbjct: 61  GNWSEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTPLGRDGKIAKPRQLHNTHWGLVC 120

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVGS   PI+EF+ +   E  EE  P   P  TK+FVN
Sbjct: 121 PAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQRNMEVLEEYEPTRSPNITKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+HRDP  L  T+  LRRR  ++ EV ++RDIR +E +I+TD GR +RPLF+++  
Sbjct: 181 GVWVGVHRDPAHLYNTVLSLRRRNMISHEVSLIRDIRDQEFKIFTDAGRVARPLFVIDND 240

Query: 284 R-------LLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDTEEEET 325
           +       L++ K  +  L+  RE P             GW  L+  G +EY+D EEEET
Sbjct: 241 KRSSRRGELVLSKELVNRLEDDRELPPGLDPDEKKEKYFGWEGLIKSGAVEYLDAEEEET 300

Query: 326 TMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCAS 366
            MI+MT  DL     VQA   P E   D              T+THCEIHPS+ILG+CAS
Sbjct: 301 VMIAMTPEDLDISRQVQAGYAPPEPSTDQNARFKAPINANVHTWTHCEIHPSMILGICAS 360

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 361 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           R+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  + E F
Sbjct: 421 RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRVGMSLVEQF 480

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTR 544
            +P RS T+ ++HG+Y+KLDDDGL  PG RVSGEDVIIGKT PI+ D  + GQ ++ +++
Sbjct: 481 EKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDTDELGQRTKLHSK 540

Query: 545 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
           RD S  LR +E G+VD+VLLTTN +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 541 RDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 600

Query: 605 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            QEDMP+T EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+
Sbjct: 601 RQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDS 660

Query: 665 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           +S+ L + GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDDKI
Sbjct: 661 VSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKI 709


>gi|418204386|gb|AFX61747.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            aggregata]
          Length = 1109

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/739 (59%), Positives = 545/739 (73%), Gaps = 41/739 (5%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
             LPH+   +  ET+KA++FGY+IH+LL CALGRR  DDRDH+G KRLDLAGPLL GLFR 
Sbjct: 371  FLPHISQSEGSETRKAFFFGYMIHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLAGLFRT 430

Query: 61   LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
            LF +LT+D+  YVQ+CV+  + ++L   IK  T++ GLKY+LATGNWG Q  AA ++AGV
Sbjct: 431  LFMRLTKDLYRYVQRCVETNRQLHLNIGIKTATLSGGLKYALATGNWGEQKKAASSKAGV 490

Query: 120  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
            SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 491  SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 550

Query: 180  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
            +LM  ITVGS    I+EFL     E  EE  P V P  TK+F+NG WVG+HRDP  LV  
Sbjct: 551  SLMCTITVGSGTAGIIEFLISQHMEVLEEFEPQVSPDVTKVFLNGVWVGVHRDPSHLVSK 610

Query: 240  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
            ++ LRR+  +  E  +VRDIR +E +I+TD GR  RPLF+V+          L + K  I
Sbjct: 611  VQNLRRQNLLPYETSLVRDIRDREFKIFTDAGRVCRPLFVVDNNPSSERCGSLALTKDHI 670

Query: 293  IALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----V 336
              L+  +       PED      GW  LV  G IEY+D EEEET MI MT  DL     V
Sbjct: 671  RKLEADKDLPPDLDPEDRRQRYYGWQGLVNSGVIEYVDAEEEETIMIVMTPEDLDFQKQV 730

Query: 337  QARLHPEE-AYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
            +    PE+ +Y D              +YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 731  RQGARPEDDSYLDPNRRVRNPFTNKVHSYTHCEIHPSMILGICASIIPFPDHNQSPRNTY 790

Query: 382  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
            QSAMGKQAMG+++TN+  RM+T++ +LYYPQKPL TTR+ME L FR+LPAG NAIVAIAC
Sbjct: 791  QSAMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIAC 850

Query: 442  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
            YSGYNQEDSVIMNQSSIDRG FRSLF+R Y D EKK+G  V E F  P +  T+ M++  
Sbjct: 851  YSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEKKIGVAVVEKFEYPSKEETLRMKNHP 910

Query: 502  YDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMV 559
            YDKLD DG+A  G  VSG D+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G V
Sbjct: 911  YDKLDHDGIAAVGMHVSGNDIIIGKTAPLAPESEELGQRTKQHTKLDVSTQLRSTENGHV 970

Query: 560  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
            DQVL++T++D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD
Sbjct: 971  DQVLVSTSSDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYCQEDMPFTREGVTPD 1030

Query: 620  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
            +I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD++S+ L + GYQ RGF
Sbjct: 1031 LIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSRLLREHGYQSRGF 1090

Query: 680  ETMYNGHTGRRLTAMIFLG 698
            E MYNGHTGR+L A +FLG
Sbjct: 1091 EVMYNGHTGRKLVAQVFLG 1109


>gi|103001284|gb|ABF71500.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           cf. chlorophanum Feuerer 18.2.2003]
          Length = 699

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/699 (62%), Positives = 533/699 (76%), Gaps = 40/699 (5%)

Query: 51  GPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-Q 109
           GPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYSLATGNWG Q
Sbjct: 1   GPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYSLATGNWGDQ 60

Query: 110 ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 169
             AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPE
Sbjct: 61  KKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 120

Query: 170 GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 229
           GQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+
Sbjct: 121 GQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGV 180

Query: 230 HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------ 283
           HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++        
Sbjct: 181 HRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNC 240

Query: 284 -RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMT 331
             L++ K         +D+ A+   E  E    GW  LV  G +EY+D EEEET MI MT
Sbjct: 241 GNLVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMT 300

Query: 332 INDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPD 372
             DL  +R                     P    A T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 301 PEDLEISRQIQAGYAMPETSDDPNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPD 360

Query: 373 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 432
           HNQSPRNTYQSAMGK  MG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG
Sbjct: 361 HNQSPRNTYQSAMGKXXMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAG 420

Query: 433 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 492
            NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS
Sbjct: 421 QNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRS 480

Query: 493 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 550
           +T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  
Sbjct: 481 DTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTP 540

Query: 551 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 610
           LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 541 LRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMP 600

Query: 611 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 670
           +T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L 
Sbjct: 601 FTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLR 660

Query: 671 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 661 EHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 699


>gi|103001965|gb|ABF71529.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           cf. chlorophanum Nash 26]
          Length = 714

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/711 (62%), Positives = 533/711 (74%), Gaps = 40/711 (5%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLF KLT+DV  Y+ KCV++G++ NL   +K+ TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLANLFRMLFNKLTKDVXKYLXKCVESGREFNLTLGVKSTTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 121 LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 180

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181 FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 281 EKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 322
           +          L++ K         RD+ A+   E  E    GW  LV  G +EY+D EE
Sbjct: 241 DNDPKSTNCGNLVLTKEHINKLEDDRDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEE 300

Query: 323 EETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGV 363
           EET MI MT  DL     +QA     EA  D              T+THCEIHPS+ILG+
Sbjct: 301 EETVMIVMTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGI 360

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSP NTYQS MG             RMDT A +LYYPQKPL TTR+ME 
Sbjct: 361 CASIIPFPDHNQSPXNTYQSXMGXXXXXXXXXXXXQRMDTXANILYYPQKPLATTRSMEF 420

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 421 LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 480

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 541
           E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ 
Sbjct: 481 EQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKL 540

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
           + +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 541 HVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 600

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601 ITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           VD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 661 VDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 711


>gi|103001706|gb|ABF71518.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 695

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/695 (63%), Positives = 529/695 (76%), Gaps = 40/695 (5%)

Query: 50  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 108
           AGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG 
Sbjct: 1   AGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGD 60

Query: 109 QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 168
           Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61  QKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 169 EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 228
           EGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG
Sbjct: 121 EGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVG 180

Query: 229 IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 283
           +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++       
Sbjct: 181 VHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTN 240

Query: 284 --RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISM 330
              L++ K         +D+ A    E  E    GW  LV  G +EY+D EEEET MI M
Sbjct: 241 CGNLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVM 300

Query: 331 TINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFP 371
           T  DL  +R                     P    A T+THCEIHPS+ILG+CASIIPFP
Sbjct: 301 TPEDLEISRQIQAGYAMPETSDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFP 360

Query: 372 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
           DHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 361 DHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 420

Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
           G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P R
Sbjct: 421 GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMR 480

Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 549
           S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S 
Sbjct: 481 SDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVST 540

Query: 550 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 609
            LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 541 PLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 600

Query: 610 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           P+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L
Sbjct: 601 PFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLL 660

Query: 670 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
            + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 661 REHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 695


>gi|123979418|gb|ABM81534.1| RNA polymerase II second largest subunit [Buellia fimbriata]
          Length = 704

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/703 (62%), Positives = 538/703 (76%), Gaps = 41/703 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFR LF KL +DV  Y++ C++N K+ NL   +KA TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAGLFRTLFNKLNKDVEKYLKSCIENNKEFNLAIGVKANTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM Y++VGS +  I++FL +   E+ EE  P   P ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLSLMCYVSVGSPSDGIIDFLLQRQMESLEEYDPLTSPNATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVGIHR+P  LV  ++ LRRR  +  EV +VRDIR +E +I TD GR  RPLF+VE  
Sbjct: 182 GVWVGIHRNPAHLVSAVQSLRRRHIIAHEVSLVRDIRDREFKILTDQGRVLRPLFVVEND 241

Query: 284 -------RLLIKKRDIIALQQR-ESPEDG----------GWHDLVAKGFIEYIDTEEEET 325
                   L++ K  I AL +  + P D           GW +L+ +G +EYID EEEET
Sbjct: 242 VKSPNCGNLVLNKEHIDALAKGGDVPLDMDKDERKEMIYGWDNLIEEGIVEYIDAEEEET 301

Query: 326 TMISMTINDLVQARLH------PE-------------EAYADTYTHCEIHPSLILGVCAS 366
            MISM+ +DL  +R +      PE                A T+THCEIHPS+ILGVCAS
Sbjct: 302 VMISMSPSDLQISRQYQAGYALPEADDDPNARVKASTNTKAHTWTHCEIHPSMILGVCAS 361

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM+T+A++LYYPQKPL TTR+ME L F
Sbjct: 362 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMAHILYYPQKPLATTRSMEFLKF 421

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G    E F
Sbjct: 422 RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGLTTLETF 481

Query: 487 GRPDRSNTMGMRHGSYDKLDD-DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-T 543
            +P RSNTM ++HG+Y+KLDD DG+  PG RVSGED++IGKT PI+ D E  GQ ++   
Sbjct: 482 EKPMRSNTMKLKHGTYEKLDDGDGIIIPGARVSGEDIVIGKTAPIAADAEELGQGTKIRE 541

Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
           +RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 542 KRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 601

Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
           Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD
Sbjct: 602 YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVD 661

Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           ++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+
Sbjct: 662 SVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 704


>gi|119644030|gb|ABL85602.1| RNA polymerase II second largest subunit [Flavopunctelia
           flaventior]
          Length = 708

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/708 (61%), Positives = 534/708 (75%), Gaps = 41/708 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPL+  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+
Sbjct: 1   DDRDHFGKKRLDLAGPLMANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GL+YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLRYSLATGNWGDQKKAAQSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNL+LM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLSLMCYITVGTPSEPIIDFMIQRNMEVLEEYEPQRSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+F NG WVG+HRDP  L   + +LRR   ++ E  +VRDIR +E +I+TD GR  R
Sbjct: 181 NATKVFANGVWVGVHRDPAHLTSVMLKLRRTHAISHETSLVRDIRDREFKIFTDAGRVCR 240

Query: 276 PLFIVEKQ-------RLLIKKRDIIALQQRESPEDG------------GWHDLVAKGFIE 316
           PLF+++          L++ K+ I+ L+     +D             GW  LV +G +E
Sbjct: 241 PLFVIDNDVKSERAGELVLTKQHIMKLEDDRDIKDSDLPQEEKDERTWGWKGLVEEGIVE 300

Query: 317 YIDTEEEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHP 357
           Y+D EEEET MI MT  DL  ++                     P    A T+TH EIHP
Sbjct: 301 YLDAEEEETAMIVMTPEDLEISKQVRRGEVIIDDNPDPNKRVKTPINPTAHTWTHSEIHP 360

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAM   +TNY+ RMDT+A +LYYPQKPL T
Sbjct: 361 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMXXTLTNYEQRMDTMANILYYPQKPLAT 420

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 421 TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 480

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481 IGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEEL 540

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541 GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDAT
Sbjct: 601 QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQ
Sbjct: 661 PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQ 708


>gi|396941905|gb|AFN89670.1| RNA polymerase II, partial [Babjeviella inositovora]
          Length = 758

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/709 (60%), Positives = 535/709 (75%), Gaps = 34/709 (4%)

Query: 1   MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
           +LPH+   +  E +KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+
Sbjct: 49  LLPHITQEEGFENRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRI 108

Query: 61  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
           LFRKL+RD+  ++QKCV+  K+ +L  A+K+ TITSGLKYSLATGNWG Q  A  +RAGV
Sbjct: 109 LFRKLSRDIYRHMQKCVETNKEFHLTLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGV 168

Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
           SQVLNR TY STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 169 SQVLNRYTYTSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 228

Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
           +LM  I+VG+ + PI+ FLEEWG E  E+      P +T++FVNG WVG HR+P MLV T
Sbjct: 229 SLMTCISVGTTSEPIIYFLEEWGMEPLEDYVAHHSPDSTRVFVNGVWVGTHREPAMLVNT 288

Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
           +R LRR+ D++ EV ++RDIR KE +I+T  GR   PLF+V        K +L +    +
Sbjct: 289 MRSLRRKGDISPEVSIIRDIRKKEFKIFTXAGRIXXPLFVVXDDXEXPXKGQLXLXXSQV 348

Query: 293 IALQQRESPEDG--------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
               +     D         GW DL+  G +EY+D EEEET MI+MT  DL  AR    E
Sbjct: 349 NXXXEPAKESDDVDMEEQKYGWDDLLNSGVVEYVDAEEEETIMIAMTPEDLDSARAEITE 408

Query: 345 A---------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
           A                  T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 409 AEELDPAKRIKPAFNPNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 468

Query: 390 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
           MG++ TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NA+VAIACYSGYNQED
Sbjct: 469 MGVFATNYSVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAVVAIACYSGYNQED 528

Query: 450 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD-DD 508
           S+IMNQSSIDRG FRSLFFR+Y D+E ++G  V E+F +P RSNT+ ++HG+Y+KLD +D
Sbjct: 529 SMIMNQSSIDRGLFRSLFFRTYMDKETRVGISVVEEFEKPLRSNTLRLKHGTYEKLDEED 588

Query: 509 GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
           GL  PG RVSGED+IIGKTTPIS D E  GQ ++Y T+RD S  LR +E+G+VDQV+LTT
Sbjct: 589 GLVAPGVRVSGEDIIIGKTTPISPDAEELGQRTKYHTKRDASTPLRSTESGIVDQVVLTT 648

Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
           N DG +FVKVR+R+ + PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+NPHA
Sbjct: 649 NGDGAKFVKVRMRTTKTPQIGDKFASRHGQKGTIGVTYRHEDMPFSSEGIVPDLIINPHA 708

Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           IPSRMT+  LIEC++ KV+A  G EGDA+PFTDVTV+ +SK L + GYQ
Sbjct: 709 IPSRMTVAHLIECLLSKVSALRGYEGDASPFTDVTVEAVSKLLRESGYQ 757


>gi|52699808|gb|AAU86966.1| DNA-dependent RNA polymerase II second largest subunit
           [Diploschistes scruposus]
          Length = 713

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/713 (61%), Positives = 538/713 (75%), Gaps = 40/713 (5%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KR DLAGPL+  LFR LF +LT+DV  Y+QKC++  +D N+   +K+ T+T+GLKYSL
Sbjct: 1   GKKRXDLAGPLMASLFRSLFNRLTKDVLKYLQKCIEGNRDFNIALGVKSTTLTNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNW  Q  AA  +AGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WG+
Sbjct: 61  ATGNWSEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTPLGRDGKIAKPRQLHNTHWGL 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM YITVGS   PI+EF+ +   E  EE  P   P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQRNMEVLEEYEPTRSPNITKVF 180

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG WVG+HRDP  L  T+  LRRR  ++ EV ++RDIR +E +I+TD GR +RPLF+++
Sbjct: 181 VNGVWVGVHRDPAHLYNTVLSLRRRNMISHEVSLIRDIRDQEFKIFTDAGRVARPLFVID 240

Query: 282 KQR-------LLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDTEEE 323
             +       L++ K  +  L+  RE P D           GW  LV  G +EY+D EEE
Sbjct: 241 NDKRSSRRGELVLSKELVNRLEDDRELPPDLDPDEKKEKYFGWEGLVKSGAVEYLDAEEE 300

Query: 324 ETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVC 364
           ET MI+MT  DL     VQA   P E   D              T+THCEIHPS+ILG+C
Sbjct: 301 ETVMIAMTPEDLDISRQVQAGYAPPEPSTDQNARFKAPVNTNVHTWTHCEIHPSMILGIC 360

Query: 365 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 424
           ASIIPFPDHNQSPRNTYQSAMG QAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 361 ASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFL 420

Query: 425 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 484
            FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  + E
Sbjct: 421 KFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRVGMSLVE 480

Query: 485 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-Y 542
            F +P RS T+ ++HG+Y+KLDDDGL  PG RVSGEDVIIGKT PI+ D  + GQ ++ +
Sbjct: 481 QFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDTDELGQRTKLH 540

Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
           ++RD S  LR +E G+VD+VLLTTN +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 541 SKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 600

Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 662
           TY QEDMP+T EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTV
Sbjct: 601 TYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTV 660

Query: 663 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           D++S+ L + GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVD KI +
Sbjct: 661 DSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDXKIXA 713


>gi|94410944|gb|ABF18590.1| RNA polymerase II second largest subunit, partial [Kuehneromyces
           rostratus]
          Length = 669

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/670 (65%), Positives = 527/670 (78%), Gaps = 25/670 (3%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           M+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+
Sbjct: 121 MVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSTTP-CTKV 179

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG W+G+HRD   LVKTL++LRRR D++ EV VVRDIR KELR+YTD GR  RPLFIV
Sbjct: 180 FVNGVWMGVHRDAANLVKTLKKLRRRDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIV 239

Query: 281 EKQRLLIKKRDI--IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           E Q+L ++K+ I  I     +  E+  W  ++  G IE +D EEEET MISMT  DL  +
Sbjct: 240 ENQQLALQKKHIRWINNGTHDDGEEYKWEQMIKGGVIELLDAEEEETVMISMTPEDLENS 299

Query: 339 RLH-----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           RL      PE+                A T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 300 RLQQSGIAPEQNTGEFDPAARLKAGTPAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 359

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360 TYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ ++H
Sbjct: 420 LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRLKH 479

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G
Sbjct: 480 GTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESG 539

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVL+TTN++G +FVKVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 540 IVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTCEGIV 599

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L + GYQ R
Sbjct: 600 PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSTFLRQKGYQSR 659

Query: 678 GFETMYNGHT 687
           G E MY+GHT
Sbjct: 660 GLEIMYHGHT 669


>gi|110734400|gb|ABG88855.1| RNA polymerase II second largest subunit [Mrakia frigida]
          Length = 705

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/707 (62%), Positives = 530/707 (74%), Gaps = 42/707 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DD DH+G KRLDLAGPLL GLFRMLF+KLT+DV  Y+QKCV+  K+  L+ A++  TIT+
Sbjct: 1   DDSDHFGKKRLDLAGPLLAGLFRMLFKKLTKDVFRYLQKCVETRKEFKLESAVRQATITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WGM+CPAETPEGQACGLVKNLALM YI+VGS + PILEFL+EWG E  EE + A  P
Sbjct: 121 NTHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPILEFLDEWGLEALEEYAGA--P 178

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG WVG+HRD   L + L RLRR  D+ +EV VVRDIR +ELR+YTD GR  R
Sbjct: 179 SATKVFVNGVWVGVHRDANQLTEHLIRLRRCSDIKSEVSVVRDIRERELRLYTDAGRVCR 238

Query: 276 PLFIVEK--QRLLIKKRDIIALQQR-------ESPEDGGWHDLVAKGFIEYIDTEEEETT 326
           PLF+V +  Q+L +KK D+  L          ES +   W  L+ +G IE +D EEEET 
Sbjct: 239 PLFVVNQSDQQLALKKEDVGKLTNSKDENLNDESEDHYTWTHLLEEGKIELLDAEEEETV 298

Query: 327 MISMTINDLVQARLHPEEA----------------------------YADTYTHCEIHPS 358
           MI+MT  DL  AR    +A                            ++ T+THCEIHPS
Sbjct: 299 MIAMTPEDLAAAREAESQADMSVREQQRVQMQTGQDYDVAGRAKSTSFSHTFTHCEIHPS 358

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILG+CASIIPFPDHNQ           KQAMGIY+TNYQ RMDT+A +LYYPQKPL TT
Sbjct: 359 MILGICASIIPFPDHNQXXXXXXXXXXXKQAMGIYLTNYQIRMDTMANILYYPQKPLATT 418

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY+D EKK 
Sbjct: 419 RSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYQDVEKKN 478

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 537
           G +  E+F +P R +T+ ++ G+YDKLD DGL  PG  V+GED+IIGKT PI +D E  G
Sbjct: 479 GMVSLEEFEKPTRDSTLRLKQGTYDKLDADGLVSPGVGVNGEDIIIGKTAPIPKDSEELG 538

Query: 538 Q-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           Q  + +T+RD S  L+ +E G+VDQVL+TTNADGL+FVK+RVRS R+PQIGDKF+SRHGQ
Sbjct: 539 QRQATHTKRDVSTPLKSTEQGIVDQVLVTTNADGLKFVKIRVRSTRVPQIGDKFASRHGQ 598

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGTVG+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATP
Sbjct: 599 KGTVGITYRQEDMPFTSEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLLGTEGDATP 658

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           FTD+TV+ +S  L   GYQ RG E MY+GHTGR+L A ++LGPTYYQ
Sbjct: 659 FTDLTVEAVSARLKDKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQ 705


>gi|52699782|gb|AAU86953.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           schleicheri]
          Length = 720

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/719 (61%), Positives = 539/719 (74%), Gaps = 54/719 (7%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YI+VG+ + PI++F+ +   E  EE  P   P ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQRNMEVLEEYEPQRSPNATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+H DP  LV T++ +RR   ++ EV +VRDIR +E +I+TD GR  RPLF+++  
Sbjct: 182 GVWVGVHSDPVHLVNTVQAVRRGHMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDND 241

Query: 284 -------RLLIKKRDIIALQQRE--SPE-----------------DG---GWHDLVAKGF 314
                   L++ K  I  L+  +  S E                 DG   GW+ L+ +G 
Sbjct: 242 PKSPRCGSLVLTKEHINKLEDYKDLSAEMQEKIREKEEVEKEVKEDGTPYGWNGLIKRGV 301

Query: 315 IEYIDTEEEETTMISMTINDLVQARL----------------------HPEEAYADTYTH 352
           +EY+D EEEET MI MT  DL  +R                        P    A T+TH
Sbjct: 302 VEYVDAEEEETVMIVMTPEDLEISRQLQAGYVLPEPSDTSEALMKRVKAPMNPTAHTWTH 361

Query: 353 CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 412
           CEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG QAMG+++T Y  RMDT+A +LYYPQ
Sbjct: 362 CEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTXYXQRMDTMANILYYPQ 421

Query: 413 KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 472
           KPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY 
Sbjct: 422 KPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYT 481

Query: 473 DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 532
           D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ 
Sbjct: 482 DQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAP 541

Query: 533 D-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 590
           D E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF
Sbjct: 542 DAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKF 601

Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
           +SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G 
Sbjct: 602 ASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGF 661

Query: 651 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           EGDATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 662 EGDATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 720


>gi|103001775|gb|ABF71521.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 697

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/697 (62%), Positives = 531/697 (76%), Gaps = 40/697 (5%)

Query: 53  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 111
           LL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYSLATGNWG Q  
Sbjct: 1   LLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYSLATGNWGDQKK 60

Query: 112 AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 171
           AA ++AGVSQVLNR T+AS LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQ
Sbjct: 61  AASSKAGVSQVLNRYTFASILSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 120

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HR
Sbjct: 121 ACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVHR 180

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------R 284
           DP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          
Sbjct: 181 DPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNCGN 240

Query: 285 LLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
           L++ K         +D+ A+   E  E    GW  LV  G +EY+D EEEET MI MT  
Sbjct: 241 LVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMTPE 300

Query: 334 DLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 374
           DL  +R                     P    A T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 301 DLEISRQIQAGYAMPETSDDPNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPDHN 360

Query: 375 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 434
           QSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG N
Sbjct: 361 QSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQN 420

Query: 435 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 494
           AIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS+T
Sbjct: 421 AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRSDT 480

Query: 495 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 552
           + ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR
Sbjct: 481 LKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPLR 540

Query: 553 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
            +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 541 STENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFT 600

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
           +EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L + 
Sbjct: 601 MEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLREH 660

Query: 673 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMV
Sbjct: 661 GYQSRGFEVMYNGHTGRKLVAQVFXGPTYYQRLRHMV 697


>gi|52699788|gb|AAU86956.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           clauzadeana]
          Length = 723

 Score =  899 bits (2324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/721 (61%), Positives = 539/721 (74%), Gaps = 54/721 (7%)

Query: 47  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 106
           LDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGN
Sbjct: 1   LDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGN 60

Query: 107 WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 165
           WG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPA
Sbjct: 61  WGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 120

Query: 166 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 225
           ETPEGQACGLVKNLALM YI+VG+ + PI++F+ +   E  EE  P   P ATK+FVNG 
Sbjct: 121 ETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQRNMEVLEEYEPQRSPNATKVFVNGV 180

Query: 226 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-- 283
           WVG+H DP  LV T++ +RR   ++ EV +VRDIR +E +I+TD GR  RPLF+++    
Sbjct: 181 WVGVHSDPVHLVNTVQAVRRGHMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPK 240

Query: 284 -----RLLIKKRDIIALQQRE--SPE-----------------DG---GWHDLVAKGFIE 316
                 L++ K  I  L+  +  S E                 DG   GW+ L+ +G +E
Sbjct: 241 SPRCGNLVLTKEHINKLEDYKDLSAEMQEKIREKEEVEKEVKEDGTPYGWNGLIKRGVVE 300

Query: 317 YIDTEEEETTMISMTINDLVQARL----------------------HPEEAYADTYTHCE 354
           Y+D EEEET MI MT  DL  +R                        P    A T+THCE
Sbjct: 301 YVDAEEEETVMIVMTPEDLEISRQLQAGYVLPEPSDTSEALMKRVKAPMNPTAHTWTHCE 360

Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 414
           IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG     Y+ RMDT+A +LYYPQKP
Sbjct: 361 IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXXXXYEQRMDTMANILYYPQKP 420

Query: 415 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 474
           L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+
Sbjct: 421 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 480

Query: 475 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 533
           EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D 
Sbjct: 481 EKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDA 540

Query: 534 EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 592
           E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+S
Sbjct: 541 EELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFAS 600

Query: 593 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 652
           RHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EG
Sbjct: 601 RHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEG 660

Query: 653 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           DATPFT++TVD++SK L + GYQ RGFE M+NGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 661 DATPFTEITVDSVSKLLREHGYQSRGFEVMHNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 720

Query: 713 I 713
           I
Sbjct: 721 I 721


>gi|300394748|gb|ADK11912.1| DNA-directed RNA polymerase II subunit two, partial [Ramariopsis
           kunzei]
          Length = 678

 Score =  899 bits (2324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/679 (64%), Positives = 533/679 (78%), Gaps = 26/679 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLF+KLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVETRKEFNLALAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGN G Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+  G 
Sbjct: 61  ATGNRGDQKKSTASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHRGT 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSPIP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ--RESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
            Q+L ++K+ I  L Q  R+  ED   W  LV  G +E +D EEEET MISMT  DL  +
Sbjct: 240 NQQLALQKKHIRWLVQGHRDDAEDDFKWEHLVKGGIVELLDAEEEETVMISMTPEDLENS 299

Query: 339 RL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 379
           RL       H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 300 RLQSSGVDPHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 359

Query: 380 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 439
           TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360 TYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 440 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 499
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+H
Sbjct: 420 LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRMKH 479

Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 557
           G+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G
Sbjct: 480 GTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENG 539

Query: 558 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 617
           +VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 540 IVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIV 599

Query: 618 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 677
           PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L + GY  R
Sbjct: 600 PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSTFLKQKGYLSR 659

Query: 678 GFETMYNGHTGRRLTAMIF 696
           G E MY+GHTGR+L A+++
Sbjct: 660 GLEVMYHGHTGRKLQALVY 678


>gi|103001423|gb|ABF71507.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 693

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/693 (63%), Positives = 527/693 (76%), Gaps = 40/693 (5%)

Query: 52  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 110
           PLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q 
Sbjct: 1   PLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQK 60

Query: 111 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 170
            AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEG
Sbjct: 61  KAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 120

Query: 171 QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 230
           QACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+H
Sbjct: 121 QACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVH 180

Query: 231 RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------- 283
           RDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++         
Sbjct: 181 RDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNCG 240

Query: 284 RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTI 332
            L++ K         +D+ A    E  E    GW  LV  G +EY+D EEEET MI MT 
Sbjct: 241 NLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMTP 300

Query: 333 NDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 373
            DL  +R                     P    A T+THCEIHPS+ILG+CASIIPFPDH
Sbjct: 301 EDLEISRQIQAGYAMPETSDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPDH 360

Query: 374 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 433
           NQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG 
Sbjct: 361 NQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQ 420

Query: 434 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 493
           NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS+
Sbjct: 421 NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRSD 480

Query: 494 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISL 551
           T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  L
Sbjct: 481 TLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPL 540

Query: 552 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 611
           R +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+
Sbjct: 541 RSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPF 600

Query: 612 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 671
           T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L +
Sbjct: 601 TKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLRE 660

Query: 672 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
            GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 661 HGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 693


>gi|52699835|gb|AAU86979.1| DNA-dependent RNA polymerase II second largest subunit [Maronea
           chilensis]
          Length = 718

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/721 (59%), Positives = 543/721 (75%), Gaps = 51/721 (7%)

Query: 41  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 100
           H G KRLD AGPLL  LFR +F KL  D+  Y+ +C+D+G++ NLQ A+K+ TITSGL+Y
Sbjct: 1   HXGKKRLDXAGPLLANLFRQVFTKLIGDMNKYLSRCIDSGREFNLQLAVKSNTITSGLRY 60

Query: 101 SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 159
           SL+TGNW  Q NAA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 61  SLSTGNWSDQKNAATAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 120

Query: 160 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 219
           G++CPAETPEGQACGLVKNLALM Y++VG+ + PIL+FL +   E  EE  P   P ATK
Sbjct: 121 GLVCPAETPEGQACGLVKNLALMCYVSVGTPSDPILDFLVQRNMEVLEEYEPQRSPNATK 180

Query: 220 IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 279
           +FVNG WVG+HR+P  LV T+++LRR   ++ E+ +V DIR +E +I+TD GR  RPLF+
Sbjct: 181 VFVNGVWVGVHRNPIHLVNTVQKLRRTSVLSYEISLVHDIRDREFKIFTDAGRVCRPLFV 240

Query: 280 VEKQ-------RLLIKK---------------RDIIALQQRESPEDGGWHDLVAKGFIEY 317
           VE          L++ K               +D +A    +  E  GW  LV +G +EY
Sbjct: 241 VETDPKSANNGNLVLTKEHVNKLEDHKETMMDKDRMARMSEKDKELLGWSGLVKQGMVEY 300

Query: 318 IDTEEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCE 354
           +D EEEET MI MT  DL                       V+A ++P    A T+THCE
Sbjct: 301 VDAEEEETVMIVMTPEDLEISRQIQAGYALPEPSVDEPNRRVKAPINPT---AHTWTHCE 357

Query: 355 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 414
           IHPS+ILG+CASIIPFPDHNQSPRNTY SAMGKQAMG+Y+TN+  RMDT+A +LYYPQKP
Sbjct: 358 IHPSMILGICASIIPFPDHNQSPRNTYXSAMGKQAMGVYLTNFDQRMDTMANILYYPQKP 417

Query: 415 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 474
           L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y+D+
Sbjct: 418 LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDQ 477

Query: 475 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 533
           EK++G  V E F +P RS+T+ ++ G+YDK+D DG+  PG+RVSGED+IIGKT P++ D 
Sbjct: 478 EKRIGMNVVEQFEKPMRSDTLKLKMGTYDKIDADGIVAPGSRVSGEDIIIGKTAPMAADA 537

Query: 534 EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 592
           E  GQ ++ + +RD S  LR +E+G+VD+VL TTN++GL+FVKVR+R+ ++PQIGDKF+S
Sbjct: 538 EELGQRTKLHIKRDVSTPLRSTESGIVDRVLYTTNSEGLKFVKVRMRTTKVPQIGDKFAS 597

Query: 593 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 652
           RHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EG
Sbjct: 598 RHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEG 657

Query: 653 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           DATPFTDVTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDD 
Sbjct: 658 DATPFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDX 717

Query: 713 I 713
           I
Sbjct: 718 I 718


>gi|103001497|gb|ABF71510.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 695

 Score =  898 bits (2321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/694 (63%), Positives = 529/694 (76%), Gaps = 40/694 (5%)

Query: 51  GPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-Q 109
           GPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q
Sbjct: 2   GPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQ 61

Query: 110 ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 169
             AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPE
Sbjct: 62  KKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 121

Query: 170 GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 229
           GQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+
Sbjct: 122 GQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGV 181

Query: 230 HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------ 283
           HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++        
Sbjct: 182 HRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNC 241

Query: 284 -RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMT 331
             L++ K         +D+ A    E  E    GW  LV  G +EY+D EEEET MI MT
Sbjct: 242 GNLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMT 301

Query: 332 INDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPD 372
             DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 302 PEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPD 361

Query: 373 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 432
           HNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG
Sbjct: 362 HNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAG 421

Query: 433 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 492
            NAIVAIACYSGYNQEDSVIMNQSSID G FRSLF+RSY D+EK++G  V E F +P RS
Sbjct: 422 QNAIVAIACYSGYNQEDSVIMNQSSIDHGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRS 481

Query: 493 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 550
           +T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  
Sbjct: 482 DTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTP 541

Query: 551 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 610
           LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 542 LRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMP 601

Query: 611 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 670
           +T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L 
Sbjct: 602 FTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLR 661

Query: 671 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 662 EHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 695


>gi|357216661|gb|AET71064.1| RNA polymerase II second largest subunit, partial [Datronia
           scutellata]
          Length = 674

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/674 (65%), Positives = 536/674 (79%), Gaps = 24/674 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV+ GK+ NL  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRHLQKCVEMGKEFNLSLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +   +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VG+ + P++EFLEEWG E+ EE + A  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LV+TLRRLRR+ D+N EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPAGLVRTLRRLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+LL++K+ I +L + +E P  +  W +++ +G IE +D EEEET MI MT  DL  +R
Sbjct: 240 DQQLLVQKKHIESLVRSKEDPSFEYNWDNMIKEGVIELLDAEEEETVMICMTPEDLENSR 299

Query: 340 LH-----PEE-------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
           L      PEE              YA T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 300 LQAAGVDPEEDENVDPSARLKAPTYAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 359

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 360 QSAMGKQAMGIFLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILC 419

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 420 YSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVTQLEEFEKPTRDTTLRMKHGT 479

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDKL++DGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+V
Sbjct: 480 YDKLENDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEQGIV 539

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 540 DQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPD 599

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
           II+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFT++TV+ +S  L + GYQ RG 
Sbjct: 600 IIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTNLTVETVSTFLRQKGYQSRGL 659

Query: 680 ETMYNGHTGRRLTA 693
           E MY+GHTGR+L A
Sbjct: 660 EVMYHGHTGRKLQA 673


>gi|123979408|gb|ABM81529.1| RNA polymerase II second largest subunit [Masonhalea richardsonii]
          Length = 704

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/703 (62%), Positives = 540/703 (76%), Gaps = 41/703 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFR  F KLT DV  Y+QKCV+N K+ N+  A+K+  +T+GL+YSLAT
Sbjct: 2   KRLDLAGPLLASLFRGTFNKLTNDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSPNATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 281
           G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  RPLF+++  
Sbjct: 182 GVWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCRPLFVIDND 241

Query: 282 -----KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEYIDTEEEET 325
                K  L++ K  +  L+  RE+     P+     D GW  LV +G +EY+D EEEET
Sbjct: 242 PRSSNKGNLVLTKEHVQKLELDRENWTTTEPDVREKTDMGWQGLVKEGVVEYVDAEEEET 301

Query: 326 TMISMTINDL-----VQARLHPE---------------EAYADTYTHCEIHPSLILGVCA 365
            MI MT  DL     +QA L P                   A T+THCEIHPS+ILG+CA
Sbjct: 302 IMIVMTPEDLDISRQLQAGLEPPGPNPNELNRRVKAPMNPTAHTWTHCEIHPSMILGICA 361

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 362 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLK 421

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FR+LPAG NAIVAIACYSG+NQEDSVI+NQSSIDRG FRSLF+R+Y D+EK++G  V E 
Sbjct: 422 FRELPAGQNAIVAIACYSGHNQEDSVIVNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEQ 481

Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 543
           F +P +S+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ + 
Sbjct: 482 FEKPMQSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 541

Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
           +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGD+F+SRHGQKGT+G+T
Sbjct: 542 KRDVSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDRFASRHGQKGTIGIT 601

Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
           Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDATPFT+VTVD
Sbjct: 602 YRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDATPFTEVTVD 661

Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           ++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+
Sbjct: 662 SVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQRLR 704


>gi|52699829|gb|AAU86976.1| DNA-dependent RNA polymerase II second largest subunit [Lempholemma
           polyanthes]
          Length = 714

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/714 (62%), Positives = 537/714 (75%), Gaps = 38/714 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D +G  RLDLAGPLL GLFRMLF KLTRDV  Y+QKCV+  ++ NL   IK  T+T+GLK
Sbjct: 1   DXFGKXRLDLAGPLLAGLFRMLFTKLTRDVYKYLQKCVELKREFNLNLGIKQATLTNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVGS + PI+EF+ +   +  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGSPSPPIIEFMIQRNMDMLEEFDPRNSPTAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVGIH +P  L   + +LRR   V+ E+ VVRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGIHHNPTHLAIDVLQLRRHNFVSPEISVVRDIREREFKIFTDAGRVCRPLF 240

Query: 279 IVEKQ-------RLLIKKRDIIALQQ-RESP------EDG--GWHDLVAKGFIEYIDTEE 322
           ++E +       RL +KK  +I L+  ++ P      ED   GW  LV  G +EY+D EE
Sbjct: 241 VIETRKGQPDTGRLTLKKHHLIRLENDKDVPFHEKDREDKIYGWQGLVHDGIVEYVDAEE 300

Query: 323 EETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGV 363
           EET MI MT  DL  +R                     P      T+THCEIHPS+ILG+
Sbjct: 301 EETIMIVMTPEDLEISRQVRAGFPWKDDNMDPNKRIKAPPNPSVHTWTHCEIHPSMILGI 360

Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
           CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TNY  RMDT++ +LYYPQKPL TTR+ME 
Sbjct: 361 CASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNYIQRMDTMSNILYYPQKPLATTRSMEF 420

Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
           L FR+LPAG NAIVAIA YSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EKK+G    
Sbjct: 421 LKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKLGMSQM 480

Query: 484 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 541
           E F RP R +T+ ++ G+YDK+D+DG+  PG RV G+D+IIGKT P++ D E  GQ ++ 
Sbjct: 481 ESFERPMRDDTLRIKRGTYDKIDEDGIIAPGVRVIGDDIIIGKTAPLAPDAEELGQRTKG 540

Query: 542 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 601
            T+RD S  LR +E G+VD+VL+T NADG RFVKVR+R+ ++PQIGDKF+SRHGQKGT+G
Sbjct: 541 QTKRDVSTPLRSTEQGIVDRVLVTVNADGQRFVKVRMRTTKVPQIGDKFASRHGQKGTIG 600

Query: 602 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 661
           +TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KVAA  G EGDATPFTD+T
Sbjct: 601 ITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVAALQGFEGDATPFTDIT 660

Query: 662 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           VD++S+ L + GYQ RGFE MYNGHTG++L A +FLGPTYYQRL+HMVD KI +
Sbjct: 661 VDSVSRLLREHGYQSRGFEVMYNGHTGKKLVAQVFLGPTYYQRLRHMVDXKIXA 714


>gi|103001800|gb|ABF71522.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 716

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/713 (61%), Positives = 530/713 (74%), Gaps = 40/713 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLK
Sbjct: 1   DXXGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVEKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDT 320
           +++          L++ K         +D+ A+   E  E    GW  LV  G +EY+D 
Sbjct: 241 VIDNDPKSTNCGNLVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDA 300

Query: 321 EEEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLIL 361
           EEEET MI MT  DL  +R                     P    A T+THCEIHPS+IL
Sbjct: 301 EEEETVMIVMTPEDLEISRQIQAGYAMPETSDDPNKRVKAPMNPTAHTWTHCEIHPSMIL 360

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           G+CASIIPFPDHNQSPRNTYQS MGKQAM                  YYPQKPL TTR+M
Sbjct: 361 GICASIIPFPDHNQSPRNTYQSXMGKQAMXXXXXXXXXXXXXXXXXXYYPQKPLATTRSM 420

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  
Sbjct: 421 EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMS 480

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 540
           V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ +
Sbjct: 481 VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRT 540

Query: 541 R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           + + +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT
Sbjct: 541 KLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 600

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           +G+TY QEDMP+T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601 IGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 660

Query: 660 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 712
           VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 661 VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 713


>gi|52699880|gb|AAU87001.1| DNA-dependent RNA polymerase II second largest subunit [Sporastatia
           polyspora]
          Length = 713

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/713 (60%), Positives = 534/713 (74%), Gaps = 40/713 (5%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV++ ++ NL   IKA T+T+GLKYSL
Sbjct: 1   GKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGIKASTLTNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 61  ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM Y+TVGS + PI++F+ +   E  EE  P   P ATKIF
Sbjct: 121 VCPAETPEGQACGLVKNLALMCYVTVGSPSEPIVDFMIQRNMEVLEEYEPQRSPNATKIF 180

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           +NG WVG+HRDP  LV T++ LRR+  ++ EV ++RDIR +E +I+TD GR  RPLF+++
Sbjct: 181 INGVWVGVHRDPAHLVSTVQALRRKNVISHEVSLIRDIRDREFKIFTDAGRVCRPLFVID 240

Query: 282 -------KQRLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEE 323
                  +  L++ K  +  L++ +       PE+      GW+ LV +G +EY+D EEE
Sbjct: 241 NDPKSTNRGNLVLTKEHVAQLEEDKEKGAEMDPEEKEGKVMGWNSLVNQGVVEYVDAEEE 300

Query: 324 ETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVC 364
           ET MI MT  DL  +R                     P    A T+THCEIHPS+ILG+C
Sbjct: 301 ETVMIVMTPEDLEISRQLQAGFAMPETIDDPNRRVKAPVNLTAHTWTHCEIHPSMILGIC 360

Query: 365 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 424
           ASIIPFPDHNQSPRNTYQSAMG QAMG                LYYPQKPL TTR+ME L
Sbjct: 361 ASIIPFPDHNQSPRNTYQSAMGXQAMGXXXXXXXXXXXXXXXXLYYPQKPLATTRSMEFL 420

Query: 425 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 484
            FR+LPAG NAIVAIACYSGYNQEDSVIM  SSIDRG FRSLF+RSY D+EK++G  + E
Sbjct: 421 KFRELPAGQNAIVAIACYSGYNQEDSVIMXXSSIDRGLFRSLFYRSYTDQEKRVGMSIVE 480

Query: 485 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 542
            F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED++IGKT PI+ D E  GQ ++ +
Sbjct: 481 QFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIVIGKTAPIAPDAEELGQRTKLH 540

Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
            +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+
Sbjct: 541 VKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGI 600

Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 662
           TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 601 TYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 660

Query: 663 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           D++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 661 DSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 713


>gi|110348037|gb|ABG72747.1| RNA polymerase II second largest subunit, partial [Exobasidium
           rhododendri]
          Length = 693

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/695 (62%), Positives = 538/695 (77%), Gaps = 29/695 (4%)

Query: 42  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 101
           +G KRLDLAGPLL GLFRMLF+KLTRD+  ++Q+CV+  KD  LQ A+K+ TIT+GLKYS
Sbjct: 1   FGKKRLDLAGPLLSGLFRMLFKKLTRDIYRHLQRCVEESKDFTLQAAVKSSTITNGLKYS 60

Query: 102 LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 160
           LATGNWG Q      +AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61  LATGNWGDQKKFMSAKAGVSQVLNRYTYASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWG 120

Query: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
           M+CPAETPEGQACGLVKNL+LM  I+VGS + PI+EFLEE+G ++  ++  A   +ATK+
Sbjct: 121 MVCPAETPEGQACGLVKNLSLMAMISVGSPSGPIIEFLEEYGLDSLVDMQIADA-KATKV 179

Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
           FVNG W+G    P  LV TLR LRR+ D++ EV VV DIR KELR+YTD GR  RPLFIV
Sbjct: 180 FVNGVWMGTCDAPSGLVDTLRDLRRKDDISIEVSVVHDIREKELRLYTDAGRVQRPLFIV 239

Query: 281 --EKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
             E + L +K + +  +  +E P DG   GW  LV  G IE +D EEEET MI M+  DL
Sbjct: 240 DPEDKTLYVKPKHVDWVVNQEKP-DGTPYGWGQLVRDGLIELLDAEEEETVMICMSPQDL 298

Query: 336 VQARLHPEEA-------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +R++ E+                      +T+THCEIHP++ILGVCASIIPFPDHNQS
Sbjct: 299 ESSRMYNEDPDSVKLSGDPTARLVSVKTYLPNTWTHCEIHPAMILGVCASIIPFPDHNQS 358

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRN YQSAMGKQAMG+Y+TNYQ RMDT++ +LYYPQKPL TT +M +L FR+LPAG NAI
Sbjct: 359 PRNVYQSAMGKQAMGVYLTNYQMRMDTMSNILYYPQKPLATTHSMGYLKFRELPAGQNAI 418

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRSL++R++ D EKK G ++ E+F +P R  ++ 
Sbjct: 419 VAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTHMDMEKKAGMILLEEFEKPSRDTSVR 478

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           ++HG+YDK+D DG   PGTRVSGED+IIGKTTP+  D E  G  S+ +T++D S  L+ +
Sbjct: 479 LKHGTYDKIDADGFCAPGTRVSGEDIIIGKTTPLPPDSEELGLRSKLHTKKDVSTPLKST 538

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL++TN++G +FVKVR+RS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T+E
Sbjct: 539 ENGIVDQVLVSTNSEGNKFVKVRIRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTIE 598

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
           G+TPDII+NPHAIPSRMTIG L+EC++ KV A  G+EGDATPFTD+TV+ +S  L + GY
Sbjct: 599 GVTPDIIINPHAIPSRMTIGHLVECLLSKVGALSGQEGDATPFTDLTVEAVSHQLRQHGY 658

Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           Q RG E MYNGHTG++L A ++LGPTYYQRLKHMV
Sbjct: 659 QSRGLEVMYNGHTGKKLQAQVYLGPTYYQRLKHMV 693


>gi|55584700|gb|AAV53581.1| RNA polymerase II second largest subunit [Peniophorella
           praetermissa]
          Length = 671

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/670 (65%), Positives = 525/670 (78%), Gaps = 24/670 (3%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFRMLFRKLT+DV  Y+QKCV+  KD N+  A+K  TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAGLFRMLFRKLTKDVYRYLQKCVETHKDFNIALAVKHNTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +A ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSASSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E  EE + +  P  TK+ VN
Sbjct: 122 PAETPEGQACGLVKNLALMATISVGSLSAPVIEFLEEWGLEPLEENAHSSTP-LTKVXVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181 GVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVEDN 240

Query: 284 RLLIKKRDIIALQQRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMT---INDL 335
           +L + K+ I  L Q    +D       W  LV  G IEY+D EEEET MI M+   ++D 
Sbjct: 241 QLALTKKHIRWLNQNRRDDDPESEKYNWDSLVKGGVIEYLDAEEEETVMICMSPEELDDN 300

Query: 336 VQARLHPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 383
           VQ +    +   D             +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQS
Sbjct: 301 VQEQPSINDPDYDPSARLKGPRVRHNWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 360

Query: 384 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 443
           AMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYS
Sbjct: 361 AMGKQAMGIFLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIMCYS 420

Query: 444 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 503
           GYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YD
Sbjct: 421 GYNQEDSVIMNQSSIDRGLFRSIYYRSYMDMEKKSGVQQLEEFEKPTRDTTVRMKHGTYD 480

Query: 504 KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 561
           K++DDGL  PGT V GED+IIGKT P++ D E  GQ +R +TRRD S  L+ +E+GMVDQ
Sbjct: 481 KIEDDGLIAPGTGVRGEDIIIGKTAPLAADSEELGQRTRTHTRRDVSTPLKSTESGMVDQ 540

Query: 562 VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 621
           VLLTTN +G +FVKVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII
Sbjct: 541 VLLTTNHEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDII 600

Query: 622 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 681
           +NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S+ L + GYQ RG E 
Sbjct: 601 INPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTELTVESVSEYLRQKGYQSRGLEI 660

Query: 682 MYNGHTGRRL 691
           MY+GHTGR+L
Sbjct: 661 MYHGHTGRKL 670


>gi|258562148|gb|ACV81796.1| RNA polymerase II second largest subunit [Entorrhiza casparyana]
          Length = 646

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/647 (66%), Positives = 513/647 (79%), Gaps = 24/647 (3%)

Query: 77  VDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHL 135
           V++ ++ NL  A+K+  IT+GLKYSLATGNWG Q      +AGVSQVLNR T+ASTLSHL
Sbjct: 1   VEHHREFNLTLAVKSNIITNGLKYSLATGNWGDQKKFMSAKAGVSQVLNRYTFASTLSHL 60

Query: 136 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 195
           RR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI+VGSA+ PI+
Sbjct: 61  RRCNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASAPII 120

Query: 196 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV 255
           EFLEEWG EN +E S +  P ATK+FVNG W+G+HRDP  LV T+RRLRR VD++ EV V
Sbjct: 121 EFLEEWGMENLDEFS-SNSPHATKVFVNGVWIGVHRDPAHLVTTIRRLRRCVDISPEVSV 179

Query: 256 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP--EDGGWHDLVAKG 313
           VRDIR KELR+YTD GR  RPLF+VE  +LL+ K  +  L+  ++P  +D GW  LV  G
Sbjct: 180 VRDIREKELRLYTDAGRVCRPLFVVENNQLLLAKPHVEWLRNHQTPSGDDFGWGSLVENG 239

Query: 314 FIEYIDTEEEETTMISMTINDLVQARLHPEEA------------------YADTYTHCEI 355
            +E+ID EEEET MI MT  DL  +R + E                    +A T+THCEI
Sbjct: 240 IVEFIDAEEEETVMICMTPEDLEHSRRYQETGIMPAQITDDPSARVKMFTFAHTWTHCEI 299

Query: 356 HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 415
           HPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDT+A +LYYPQKPL
Sbjct: 300 HPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQVRMDTMANILYYPQKPL 359

Query: 416 VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 475
             TR+MEHL FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+F+R+Y D E
Sbjct: 360 AITRSMEHLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIFYRTYMDSE 419

Query: 476 KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-E 534
           KKMG +V E+F RP R  T+ ++HG+Y+KL+ DGL  PGTRVSGED+IIGKT PI  D E
Sbjct: 420 KKMGMMVMEEFERPTRDTTLRLKHGTYEKLEGDGLIAPGTRVSGEDIIIGKTAPIPPDAE 479

Query: 535 AQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 593
             GQ ++ +T+RD S  LR +E G+VDQV++TTN +GL+FVKVRVRS R+PQ+GDKF+SR
Sbjct: 480 ELGQRTKTHTKRDVSTPLRSTENGIVDQVMITTNGEGLKFVKVRVRSTRVPQVGDKFASR 539

Query: 594 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 653
           HGQKGT+G+TY QEDMP+TVEGITPD+I+NPHAIPSRMTIG L+EC++ KV+   G EGD
Sbjct: 540 HGQKGTIGVTYRQEDMPFTVEGITPDLIINPHAIPSRMTIGHLVECLLSKVSTIAGNEGD 599

Query: 654 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
           ATPFTDVTV+ +SK L   GYQ RGFE MYNGHTG++L A +FLGPT
Sbjct: 600 ATPFTDVTVEAVSKILRANGYQSRGFEVMYNGHTGQKLAAQVFLGPT 646


>gi|300394672|gb|ADK11874.1| DNA-directed RNA polymerase II subunit two, partial [Athelia
           arachnoidea]
          Length = 671

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/672 (64%), Positives = 525/672 (78%), Gaps = 25/672 (3%)

Query: 53  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 111
            L  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  
Sbjct: 1   FLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 60

Query: 112 AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 171
           +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQ
Sbjct: 61  SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 120

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HR
Sbjct: 121 ACGLVKNLALMSCISVGSLSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHR 179

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           DP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L ++K+ 
Sbjct: 180 DPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKH 239

Query: 292 IIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-----PEE 344
           +  L Q   +S E+  W  LV  G +E +D EEEET MISMT  DL  +RL      P  
Sbjct: 240 VHWLNQGYDDSDEEFKWEQLVKSGIVELLDAEEEETVMISMTPEDLENSRLQLSGVDPTA 299

Query: 345 AYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
              D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 300 NDGDFDPAARLKAGTNTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 359

Query: 391 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 450
           GI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS
Sbjct: 360 GIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDS 419

Query: 451 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 510
           VIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDK++DDGL
Sbjct: 420 VIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKIEDDGL 479

Query: 511 APPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNA 568
             PGT VSGED+IIGKT P   Q E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN+
Sbjct: 480 FAPGTGVSGEDIIIGKTAPYPFQSEECGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNS 539

Query: 569 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
           +G +FVKVRVR+ RIPQIGDKF+SRHGQ GTVG+TY QED P+T EGI PDII+NPHAIP
Sbjct: 540 EGQKFVKVRVRATRIPQIGDKFASRHGQTGTVGITYRQEDTPFTAEGIVPDIIINPHAIP 599

Query: 629 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 688
           SRMTIG LIEC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GH+G
Sbjct: 600 SRMTIGHLIECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHSG 659

Query: 689 RRLTAMIFLGPT 700
           R+L A ++LGPT
Sbjct: 660 RKLQAQVYLGPT 671


>gi|258562136|gb|ACV81790.1| RNA polymerase II second largest subunit [Termitomyces poonensis]
          Length = 664

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/666 (65%), Positives = 525/666 (78%), Gaps = 28/666 (4%)

Query: 72  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 130
           Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +   +AGVSQVLNR TYAS
Sbjct: 2   YLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYAS 61

Query: 131 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 190
           TLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS 
Sbjct: 62  TLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSY 121

Query: 191 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 250
           + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++
Sbjct: 122 SAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDIS 180

Query: 251 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG----W 306
            EV VVRDIR KELR+YTD GR  RPLFIVE Q+L ++K+ +  L      +D G    W
Sbjct: 181 PEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALEKKHVRWLSN--GKDDNGTEYKW 238

Query: 307 HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE-------EAY-----------AD 348
             LV  G +E +D EEEET MISMT  DL  +RL          E +           + 
Sbjct: 239 ESLVKGGVVELLDAEEEETVMISMTPEDLETSRLQQSGVNPAVNEDFDPAARLKAGINSH 298

Query: 349 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 408
           T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN+  RMDT+A +L
Sbjct: 299 TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANIL 358

Query: 409 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 468
           YYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++
Sbjct: 359 YYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYY 418

Query: 469 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 528
           RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT 
Sbjct: 419 RSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTA 478

Query: 529 PI-SQDEAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
           PI  + E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +FVKVRVRS RIPQI
Sbjct: 479 PIPPESEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQI 538

Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
           GDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG L+EC++ KVA 
Sbjct: 539 GDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLVECLLSKVAT 598

Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
            +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLK
Sbjct: 599 LIGNEGDATPFTDLTVESVSTFLXQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLK 658

Query: 707 HMVDDK 712
           HMVDDK
Sbjct: 659 HMVDDK 664


>gi|46411504|gb|AAS94322.1| RNA polymerase II [Astrothelium cinnamomeum]
          Length = 722

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/726 (59%), Positives = 544/726 (74%), Gaps = 53/726 (7%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL  LFR LF++LT+DV  ++QK ++N ++ ++  A+K+  IT+
Sbjct: 1   DDRDHFGKKRLDLAGPLLASLFRTLFQRLTKDVYQHLQKAIENNREFSITLAVKSAHITN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GL+YSL+TGNWG Q  A  ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLRYSLSTGNWGEQRKAMSSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM Y++VG+ + PI+EF+     E  EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYVSVGTPSEPIVEFMNRNNMEILEEYDPVAFP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATKIFVNG WVG+ RDP  LVKT++ +RRR  ++ EV +VRD+R +E +I+TD GR  R
Sbjct: 181 NATKIFVNGVWVGVSRDPSRLVKTIQDVRRRGMISFEVSLVRDVREREFKIFTDAGRVMR 240

Query: 276 PLFIVE----------------------KQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 313
           PLF+++                      ++   IKK   +  +QRES    GW  LV  G
Sbjct: 241 PLFVIDTDPRSENRGNLIYQKDPHVYRLQEDERIKKDPTLDDEQRESMR-YGWQGLVRDG 299

Query: 314 FIEYIDTEEEETTMISMTINDL------------------------VQARLHPEEAYADT 349
            IEY+D EEEET MI M   D+                        VQA+ +P       
Sbjct: 300 VIEYLDAEEEETAMIMMFPEDISTHQAMKAGRIIVEDDGQKDPLARVQAKPNPN---VKN 356

Query: 350 YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 409
           YTHCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TN+  RMDT+  VLY
Sbjct: 357 YTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVMLTNFASRMDTMVNVLY 416

Query: 410 YPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR 469
           YPQKPL TT +M++L+F++LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R
Sbjct: 417 YPQKPLATTHSMKYLNFQELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYR 476

Query: 470 SYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 529
           SY D+EK++G+ V E+F +P RS+T+ ++ G+YDKLD+DG+  PG RVSGED+IIGKT P
Sbjct: 477 SYTDQEKRIGSTVLEEFEKPMRSDTLRLKRGTYDKLDNDGIISPGVRVSGEDIIIGKTAP 536

Query: 530 ISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 587
           I+ D E  GQ ++ +T+RD S  LR +E G+VDQV+LTTN +GL+FVKVR R+ ++PQIG
Sbjct: 537 IAPDVEELGQRTKLHTKRDVSTPLRSTENGIVDQVVLTTNTEGLKFVKVRTRTTKVPQIG 596

Query: 588 DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 647
           DKF+SRHGQKGT+G+TY QEDMP+T +GITPD+I+NPHAIPSRMTI  L+EC++ K+ + 
Sbjct: 597 DKFASRHGQKGTIGITYRQEDMPFTSQGITPDLIINPHAIPSRMTIAHLVECLLSKLGSL 656

Query: 648 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            G EGDATPF+ +TV +IS  L + G+Q RGFE MYNGHTGR+L A +F GPTYYQRL+H
Sbjct: 657 TGNEGDATPFSPITVSDISNFLRENGFQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRH 716

Query: 708 MVDDKI 713
           MVDDKI
Sbjct: 717 MVDDKI 722


>gi|194320293|gb|ACF48387.1| RNA polymerase II second largest subunit [Rhizocarpon oederi]
          Length = 696

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/699 (61%), Positives = 536/699 (76%), Gaps = 46/699 (6%)

Query: 51  GPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-Q 109
           GPLL GLFR LF+KLT+DV  Y+QKCV+  ++ NL   +K+ T+TSGLKYSLATGNWG Q
Sbjct: 1   GPLLAGLFRTLFKKLTKDVYXYLQKCVEMNREFNLTLGVKSTTLTSGLKYSLATGNWGEQ 60

Query: 110 ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 169
             AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPE
Sbjct: 61  KKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 120

Query: 170 GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 229
           GQACGLVKNLALM YITVG+ + PI++F+ +   +  EE  P   P ATKIFVNG WVG+
Sbjct: 121 GQACGLVKNLALMCYITVGTPSEPIIDFMVQRNMDLLEEYEPQSYPNATKIFVNGVWVGV 180

Query: 230 HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------K 282
           HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++E       +
Sbjct: 181 HRDPAHLVSTVQILRRRHMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIENDPRSPNR 240

Query: 283 QRLLIKKRDIIALQQ-----------RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 331
             L++ K  I  L++            +  +  GW  LV +G +EY+D EEEET MI MT
Sbjct: 241 GSLVLTKEHIQKLEEDHEIAADMDADEKESKFMGWEGLVNQGVVEYVDAEEEETVMIVMT 300

Query: 332 INDL----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 369
             DL                      V+A ++P    A T+THCEIHPS+ILG+CASIIP
Sbjct: 301 PADLEISKQLQQGYTLPEASDDPNRRVKAPMNPT---AHTWTHCEIHPSMILGICASIIP 357

Query: 370 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 429
           FPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 358 FPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFREL 417

Query: 430 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 489
           PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  + E F +P
Sbjct: 418 PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDQEKRVGMQLVEQFEKP 477

Query: 490 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 547
            RS+T+ ++HG+YDKLDDDG+  PG R+SGED+IIGKT PI+ D E  GQ ++ + +RD 
Sbjct: 478 MRSDTLRLKHGTYDKLDDDGIIAPGVRISGEDIIIGKTAPIAADAEELGQRTKLHVKRDV 537

Query: 548 SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 607
           S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QE
Sbjct: 538 STPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQE 597

Query: 608 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 667
           DMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S+
Sbjct: 598 DMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSR 657

Query: 668 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
            L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+
Sbjct: 658 LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 696


>gi|103001538|gb|ABF71512.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 692

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/692 (63%), Positives = 528/692 (76%), Gaps = 40/692 (5%)

Query: 53  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 111
           LL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q  
Sbjct: 1   LLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKK 60

Query: 112 AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 171
           AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQ
Sbjct: 61  AASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 120

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HR
Sbjct: 121 ACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVHR 180

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------R 284
           DP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          
Sbjct: 181 DPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNCGN 240

Query: 285 LLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
           L++ K         +D+ A    E  E    GW  LV  G +EY+D EEEET MI MT  
Sbjct: 241 LVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMTPE 300

Query: 334 DL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHN 374
           DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 301 DLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPDHN 360

Query: 375 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 434
           QSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG N
Sbjct: 361 QSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQN 420

Query: 435 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 494
           AIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS+T
Sbjct: 421 AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRSDT 480

Query: 495 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 552
           + ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR
Sbjct: 481 LKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPLR 540

Query: 553 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
            +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 541 STENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFT 600

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
            EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L + 
Sbjct: 601 KEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLREH 660

Query: 673 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 661 GYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 692


>gi|55583708|gb|AAV53373.1| RNA polymerase II second largest subunit [Hymenopellis radicata]
          Length = 669

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/670 (64%), Positives = 526/670 (78%), Gaps = 25/670 (3%)

Query: 59  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 117
           RMLFRKLTRDV  Y+QKCV+  K+ N    +K +TIT+GLKYSLATGNWG Q  +  ++A
Sbjct: 1   RMLFRKLTRDVYRYLQKCVETRKEFNPNDGVKRQTITNGLKYSLATGNWGDQKKSMSSKA 60

Query: 118 GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 177
           GVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVK
Sbjct: 61  GVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVK 120

Query: 178 NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 237
           NLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LV
Sbjct: 121 NLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-FTKVFVNGVWMGVHRDPANLV 179

Query: 238 KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 297
            T+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L ++K+ +  + Q
Sbjct: 180 NTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVEDQQLALQKKHVKWILQ 239

Query: 298 RESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE--EAYAD----- 348
            +  E G   W  L+  G +E +D EEEET MISMT  DL  +RL     +A A+     
Sbjct: 240 GKDDEGGEYKWEQLIKTGIVELLDAEEEETVMISMTPEDLETSRLQQNGLDATANDGEFD 299

Query: 349 ------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
                       T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN
Sbjct: 300 PAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTN 359

Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
           +  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 360 FLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 419

Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
           SIDRG FRS+++RSY D EKK G    E+F +P R +T+ M+HG+YDKL+DDGL  PGT 
Sbjct: 420 SIDRGLFRSIYYRSYMDVEKKSGVQALEEFEKPSRESTLRMKHGTYDKLEDDGLIAPGTG 479

Query: 517 VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
           V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNADG +FV
Sbjct: 480 VVGEDIIIGKTAPIPPDSEELGQRTRMHTRRDVSTPLKSTESGIIDQVLITTNADGQKFV 539

Query: 575 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
           KVRVR+ RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG
Sbjct: 540 KVRVRATRIPQTGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIG 599

Query: 635 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
            L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A 
Sbjct: 600 HLVECLLSKVATLIGHEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQ 659

Query: 695 IFLGPTYYQR 704
           ++LGPTYYQR
Sbjct: 660 VYLGPTYYQR 669


>gi|103001447|gb|ABF71508.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 692

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/692 (63%), Positives = 526/692 (76%), Gaps = 40/692 (5%)

Query: 53  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 111
           LL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q  
Sbjct: 1   LLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKK 60

Query: 112 AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 171
           AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQ
Sbjct: 61  AASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 120

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HR
Sbjct: 121 ACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVHR 180

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------R 284
           DP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          
Sbjct: 181 DPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNCGN 240

Query: 285 LLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
           L++ K         +D+ A    E  E    GW  LV  G +EY+D EEEET MI MT  
Sbjct: 241 LVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMTPE 300

Query: 334 DLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 374
           DL  +R                     P    A T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 301 DLEISRQIQAGYAMPETSDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPDHN 360

Query: 375 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 434
           QSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG N
Sbjct: 361 QSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQN 420

Query: 435 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 494
           AIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS+T
Sbjct: 421 AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRSDT 480

Query: 495 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 552
           + ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR
Sbjct: 481 LKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPLR 540

Query: 553 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
            +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 541 STENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFT 600

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
            EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L + 
Sbjct: 601 KEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLREH 660

Query: 673 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 661 GYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 692


>gi|103001521|gb|ABF71511.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 692

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/692 (63%), Positives = 528/692 (76%), Gaps = 40/692 (5%)

Query: 53  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 111
           LL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q  
Sbjct: 1   LLAXLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKK 60

Query: 112 AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 171
           AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQ
Sbjct: 61  AASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 120

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HR
Sbjct: 121 ACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVHR 180

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------R 284
           DP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          
Sbjct: 181 DPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNCGN 240

Query: 285 LLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTIN 333
           L++ K         +D+ A    E  E    GW  LV  G +EY+D EEEET MI MT  
Sbjct: 241 LVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMTPE 300

Query: 334 DL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHN 374
           DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 301 DLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPDHN 360

Query: 375 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 434
           QSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG N
Sbjct: 361 QSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQN 420

Query: 435 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 494
           AIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS+T
Sbjct: 421 AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRSDT 480

Query: 495 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 552
           + ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR
Sbjct: 481 LKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPLR 540

Query: 553 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 612
            +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 541 STENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFT 600

Query: 613 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 672
            EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L + 
Sbjct: 601 KEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLREH 660

Query: 673 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
           GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 661 GYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 692


>gi|52699896|gb|AAU87009.1| DNA-dependent RNA polymerase II second largest subunit [Thelocarpon
           laureri]
          Length = 715

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/718 (61%), Positives = 533/718 (74%), Gaps = 45/718 (6%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G KRL LAGPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +KA TIT+GLK
Sbjct: 1   DXXGKKRLXLAGPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKASTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVGS + P+++F+   G E  EE  P+  P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPLVDFMVARGMEILEEYIPSKSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNG WVG+H +P+ L  T+  +R++  +  EV ++RDIR +E RI +D GR  RPLF
Sbjct: 181 KIFVNGVWVGVHNNPKRLADTVSEVRKQHSIPPEVSMIRDIRDREFRISSDAGRVCRPLF 240

Query: 279 IVEKQ-------RLLIKKRDIIALQQRES----------PEDGGWHDLVAKGFIEYIDTE 321
           ++E         +L + K  +  L    +           +  GW  LV  G +EY+D E
Sbjct: 241 VIENDPKEENYGQLRLTKEHVKLLDNDANIEXETEEEREEKTFGWKGLVDAGVVEYVDAE 300

Query: 322 EEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSL 359
           EEET MI MT  DL                      V+A L+P    A T+THCEIHPS+
Sbjct: 301 EEETIMIVMTPEDLEISRXLRAGYQLPEDNTSSIXRVKAPLNPT---AHTWTHCEIHPSM 357

Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
           ILG+CASIIPFPDHNQSPRNTYQSAMGK A G     +  RMDT+A +LYYPQKPL TTR
Sbjct: 358 ILGICASIIPFPDHNQSPRNTYQSAMGKXAXGXXXXXFDQRMDTMANILYYPQKPLATTR 417

Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
           +ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G
Sbjct: 418 SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIG 477

Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ 538
               E F +P R +T+ ++HG+YDKLDDDG+  PG RVSGEDVIIGKT PI+ D E  GQ
Sbjct: 478 MSTIEQFEKPMRGDTLKLKHGTYDKLDDDGIIAPGVRVSGEDVIIGKTAPIAPDAEELGQ 537

Query: 539 ASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
            ++ + +RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ ++PQIGDKF+SRHGQK
Sbjct: 538 RTKMHIKRDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQK 597

Query: 598 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
           GT+G+TY QEDMP+T EG  PD+I+NPHAIPSRMTI  LIEC + KVA+  G EGDATPF
Sbjct: 598 GTIGITYRQEDMPFTSEGTIPDLIINPHAIPSRMTIAHLIECQLSKVASLKGYEGDATPF 657

Query: 658 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
           TDVTVD++S  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI +
Sbjct: 658 TDVTVDSVSGLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 715


>gi|52699841|gb|AAU86982.1| DNA-dependent RNA polymerase II second largest subunit [Peltigera
           canina]
          Length = 704

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/704 (61%), Positives = 529/704 (75%), Gaps = 41/704 (5%)

Query: 49  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 108
           LAGPLL GLFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLKYSLATGNWG
Sbjct: 1   LAGPLLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGNWG 60

Query: 109 -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 167
            Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 61  DQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 120

Query: 168 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 227
           PEGQACGLVKNLALM YITVG+   PI++F+ +   E  EE  P   P ATK+FVNG WV
Sbjct: 121 PEGQACGLVKNLALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPLRSPNATKVFVNGVWV 180

Query: 228 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 283
           G+HRDP  LV  ++ LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++      
Sbjct: 181 GVHRDPAHLVSNVQDLRRGHIISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDTRSM 240

Query: 284 ---RLLIKKRDIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMIS 329
               L++ K  I  L++ +    G           GW  LV +G +EY+D EEEET MI 
Sbjct: 241 NYGNLVLTKEHITRLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVEYVDAEEEETVMIV 300

Query: 330 MTINDLVQAR------LHPEEA--------------YADTYTHCEIHPSLILGVCASIIP 369
           MT  DL  +R        P  A               A T+THCEIHPS+ILG+CASIIP
Sbjct: 301 MTPGDLETSRQIQLGKAVPGNAEDEPNKRVNAMSHRSAQTWTHCEIHPSMILGICASIIP 360

Query: 370 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 429
           FPDHNQSPRNTYQSAMG QAMG++  NY  RMDT+A +LYYPQKP+ TTR+ME L FR+L
Sbjct: 361 FPDHNQSPRNTYQSAMGXQAMGVFXXNYXQRMDTMANILYYPQKPMATTRSMEFLKFREL 420

Query: 430 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 489
           PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  + E F +P
Sbjct: 421 PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQFEKP 480

Query: 490 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 547
            R++T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI  D E  GQ ++ + +RD 
Sbjct: 481 MRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDSEELGQRTKMHIKRDA 540

Query: 548 SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 607
           S  LR +E G+VDQVLLTTNA+GLRFVKVR+R  +IPQIGDKF+SRHG KGT+G+TY QE
Sbjct: 541 STPLRSTENGIVDQVLLTTNAEGLRFVKVRMRXXKIPQIGDKFASRHGXKGTIGITYRQE 600

Query: 608 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 667
           DMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFT+VTVD++SK
Sbjct: 601 DMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTEVTVDSVSK 660

Query: 668 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
            L   GYQ RGFE MYN HTG++L A +FLGPTYYQRL+HMVDD
Sbjct: 661 ILRAHGYQSRGFEVMYNAHTGQKLVAQVFLGPTYYQRLRHMVDD 704


>gi|396941922|gb|AFN89678.1| RNA polymerase II, partial [Candida petrohuensis]
          Length = 683

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/682 (62%), Positives = 524/682 (76%), Gaps = 33/682 (4%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFR+LFRKLT+D+  Y+QKCV+  KD NL  A+K+ T+T+GLKYSLAT
Sbjct: 2   KRLDLAGPLLANLFRLLFRKLTKDIYRYMQKCVETNKDFNLTLAVKSNTLTNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A  +RAGVSQVLNR T++STLSHLRR N+PIGR+GK+A+PRQLHN+ WG +C
Sbjct: 62  GNWGDQKKAMSSRAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKIARPRQLHNTHWGFVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM  I+VGS + PI+ FLEEWG E  E+  P     +T++FVN
Sbjct: 122 PAETPEGQACGLVKNLSLMSCISVGSPSQPIVYFLEEWGMEPLEDFVPHASTDSTRVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 281
           G W+G+HRDP  LV T+R LRR+ D++ EV ++R IR KE RI+TD GR  RPLF+V+  
Sbjct: 182 GVWIGVHRDPGHLVDTMRSLRRKGDISPEVSIIRXIREKEFRIFTDAGRVYRPLFVVDND 241

Query: 282 -----KQRLLIKKRDIIALQQRESP-----EDGGWHDLVAKGFIEYIDTEEEETTMISMT 331
                K    ++K  I  L  +E       E  GW  L++ G +EYID EEEET MI+MT
Sbjct: 242 EESSRKGEXKLRKEHIYELLSKEEAAEVGEESTGWSSLISNGIVEYIDGEEEETVMIAMT 301

Query: 332 INDLVQARL---------HPEEA---------YADTYTHCEIHPSLILGVCASIIPFPDH 373
             DL  AR           P  A         +A T+THCEIHPS+ILG+CASIIPFPDH
Sbjct: 302 PEDLELARQMXSGMDILSEPXPAQRVKPTYNPHAHTWTHCEIHPSMILGICASIIPFPDH 361

Query: 374 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 433
           NQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 362 NQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 421

Query: 434 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 493
           NAIVAI CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++
Sbjct: 422 NAIVAILCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRVGMSVVEEFEKPTRAD 481

Query: 494 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISL 551
           T+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  L
Sbjct: 482 TLRLKHGTYDKLDEDGLIAPGIRVSGEDIIIGKTAPIPPDIEELGQRTKYHTKRDASTPL 541

Query: 552 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 611
           R +E GMVDQVLLTTN +GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+
Sbjct: 542 RSTENGMVDQVLLTTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPF 601

Query: 612 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 671
           + EGI PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDATPFTDVTVD ISK L +
Sbjct: 602 SAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDATPFTDVTVDAISKLLRE 661

Query: 672 CGYQMRGFETMYNGHTGRRLTA 693
            GY  RGFE MYNGHTG++L A
Sbjct: 662 HGYHSRGFEVMYNGHTGKKLMA 683


>gi|103001649|gb|ABF71516.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 691

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/691 (63%), Positives = 529/691 (76%), Gaps = 40/691 (5%)

Query: 50  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 108
           AGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSLATGNWG 
Sbjct: 1   AGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSLATGNWGD 60

Query: 109 QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 168
           Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61  QKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 169 EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 228
           EGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG
Sbjct: 121 EGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVG 180

Query: 229 IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 283
           +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++       
Sbjct: 181 VHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTN 240

Query: 284 --RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISM 330
              L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEEET MI M
Sbjct: 241 CGNLVLTKEHINKLEDDRDLPAIMDFEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVM 300

Query: 331 TINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFP 371
           T  DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFP
Sbjct: 301 TPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFP 360

Query: 372 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
           DHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 361 DHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 420

Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
           G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P R
Sbjct: 421 GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMR 480

Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 549
           S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ + +RD S 
Sbjct: 481 SDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLHVKRDVST 540

Query: 550 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 609
            LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 541 PLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 600

Query: 610 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           P+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L
Sbjct: 601 PFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLL 660

Query: 670 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
            + GYQ RGFE MYNGHTGR+L A +FLGPT
Sbjct: 661 REHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 691


>gi|113957146|gb|ABI49102.1| RNA polymerase II second largest subunit [Flavocetraria nivalis]
          Length = 699

 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/699 (62%), Positives = 536/699 (76%), Gaps = 41/699 (5%)

Query: 46  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 105
           RLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+GL+YSLATG
Sbjct: 1   RLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLATG 60

Query: 106 NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 164
           NWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61  NWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 165 AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
           AETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVNG
Sbjct: 121 AETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSPNATKIFVNG 180

Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--- 281
            WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  RPLF+++   
Sbjct: 181 VWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCRPLFVIDNDP 240

Query: 282 ----KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEYIDTEEEETT 326
               K  L++ K  +  L+  RE+     P+     D GW  LV +G +EY+D EEEET 
Sbjct: 241 RSSNKGNLVLTKEHVQKLELDRENWATTEPDVREETDMGWQGLVKEGVVEYVDAEEEETI 300

Query: 327 MISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHPSLILGVCAS 366
           MI MT  DL     +QA L P E   D               T+THCEIHPS+ILG+CAS
Sbjct: 301 MIVMTPEDLDISHQLQAGLQPPEPNPDELNRRVKAPLNPTAHTWTHCEIHPSMILGICAS 360

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR++E L F
Sbjct: 361 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSVEFLKF 420

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
            +LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F
Sbjct: 421 TELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEQF 480

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 544
            +P RS+T+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI+ D E  GQ ++ + +
Sbjct: 481 EKPMRSDTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVK 540

Query: 545 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
           RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 541 RDVSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 600

Query: 605 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDATPFT+VTVD+
Sbjct: 601 RQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDATPFTEVTVDS 660

Query: 665 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           +S+ L + GYQ RG E MYNGHTGR+L   +FLGPTYYQ
Sbjct: 661 VSRLLREHGYQSRGLEVMYNGHTGRKLVTQVFLGPTYYQ 699


>gi|357216647|gb|AET71057.1| RNA polymerase II second largest subunit, partial [Earliella
           scabrosa]
          Length = 658

 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/659 (66%), Positives = 521/659 (79%), Gaps = 24/659 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+  L  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFVLSLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +   +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VG+ + P++EFLEEWG E+ EE + A  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKTLR+LRR+ D+N EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPASLVKTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ-RESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+LL++KR I  L + +E P  +  W  L+ +G IE +D EEEET MI MT  DL  +R
Sbjct: 240 NQQLLVQKRHIENLARGKEDPTFEYNWDSLIKEGVIELLDAEEEETVMICMTPEDLENSR 299

Query: 340 L-------HPEE-----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
           L       H EE             A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 300 LQATGDTMHDEENDDPSARLKAPTMAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 359

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 360 QSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILC 419

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 420 YSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGT 479

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDKL++DGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E G+V
Sbjct: 480 YDKLEEDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIV 539

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 540 DQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPD 599

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           II+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFTD+TV+++SK L + GYQ RG
Sbjct: 600 IIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVESVSKFLRQKGYQSRG 658


>gi|320172598|gb|ADW24182.1| RNA polymerase II second largest subunit [Veluticeps abietina]
          Length = 673

 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/674 (64%), Positives = 526/674 (78%), Gaps = 26/674 (3%)

Query: 41  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 100
           H+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKY
Sbjct: 1   HFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKY 60

Query: 101 SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 159
           SLATGNWG Q  +  T+AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ W
Sbjct: 61  SLATGNWGDQKKSMSTKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHW 120

Query: 160 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 219
           GM+CPAETPEGQACGLVKNLALM +I+VGS + P++EFLEEWG E+ EE + +  P  TK
Sbjct: 121 GMVCPAETPEGQACGLVKNLALMGWISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTK 179

Query: 220 IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 279
           +FVNG W+G+HRDP  LV+T+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFI
Sbjct: 180 VFVNGVWMGVHRDPANLVRTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFI 239

Query: 280 VEKQRLLIKKRDIIALQQ---RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
           VE Q+L ++K+ I  L Q    +  E   W  LV  G IE +D EEEET MISMT  DL 
Sbjct: 240 VENQQLALQKKHIRWLNQGYRDDDMEPWKWDQLVKNGIIELLDAEEEETVMISMTPEDLE 299

Query: 337 QARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSP 377
            +RL       H  E   D            T+THCEIHPS+ILGVCASIIPFPDHNQSP
Sbjct: 300 NSRLQSAGIDTHLNEGEYDPAVRLKAPTQGHTWTHCEIHPSMILGVCASIIPFPDHNQSP 359

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSA GKQAMGIY+TN+  RMDT+  +LYYPQKPL TTR+ME+L FR+LPAG NA  
Sbjct: 360 RNTYQSAWGKQAMGIYLTNFLVRMDTMGNILYYPQKPLATTRSMEYLKFRELPAGQNAFG 419

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
            I  YSGYNQE+SVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M
Sbjct: 420 VILGYSGYNQENSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRM 479

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
           +HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S +L+ +E
Sbjct: 480 KHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRLHTRRDVSTALKSTE 539

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
           +G+VDQVL+TTN++G +FVKVRVR+ R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 540 SGIVDQVLITTNSEGQKFVKVRVRATRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 599

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           ITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY+
Sbjct: 600 ITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYR 659

Query: 676 MRGFETMYNGHTGR 689
            RG E MY+GHTGR
Sbjct: 660 SRGLEVMYHGHTGR 673


>gi|88976114|gb|ABD59033.1| RNA polymerase II second largest subunit, partial [Clavaria
           inaequalis]
          Length = 667

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/668 (64%), Positives = 524/668 (78%), Gaps = 25/668 (3%)

Query: 52  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 110
           PLL  LFRMLFRKLT+DV  Y+QKCV++ K+ NL  A+K +TIT+GLKYSLATGNWG Q 
Sbjct: 1   PLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLALAVKHQTITNGLKYSLATGNWGDQK 60

Query: 111 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 170
            +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEG
Sbjct: 61  KSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEG 120

Query: 171 QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 230
           QACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+H
Sbjct: 121 QACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVH 179

Query: 231 RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 290
           RDP  LV+T+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+
Sbjct: 180 RDPAHLVRTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 239

Query: 291 DIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA--- 345
            I  L Q   ++ E+  W  LV  G IE +D EEEET MISMT  DL  +RL        
Sbjct: 240 HIKWLNQGYDDNGEEFRWEQLVKGGIIELLDAEEEETVMISMTPEDLENSRLQSSVVDPN 299

Query: 346 ----------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
                            A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 300 AIDPDFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQA 359

Query: 390 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
           MGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQED
Sbjct: 360 MGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQED 419

Query: 450 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
           SVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HGSYDKL+ DG
Sbjct: 420 SVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGSYDKLESDG 479

Query: 510 LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTN 567
           L  PGTRV G+D+IIGKT PI  D E  GQ +R +T+RD S  L+ +E G++DQVL+TTN
Sbjct: 480 LVAPGTRVRGDDIIIGKTAPIPPDSEELGQRTRSHTKRDVSTPLKSTENGVIDQVLITTN 539

Query: 568 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
           ++G +FVKVR+RS+R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAI
Sbjct: 540 SEGQKFVKVRLRSIRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAI 599

Query: 628 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
           PSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHT
Sbjct: 600 PSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHT 659

Query: 688 GRRLTAMI 695
           GR+L A +
Sbjct: 660 GRKLQAQV 667


>gi|300394712|gb|ADK11894.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
           lichenicola]
          Length = 664

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/665 (65%), Positives = 524/665 (78%), Gaps = 25/665 (3%)

Query: 59  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 117
           RMLFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++A
Sbjct: 1   RMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKA 60

Query: 118 GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 177
           GVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVK
Sbjct: 61  GVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVK 120

Query: 178 NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 237
           NLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LV
Sbjct: 121 NLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLV 179

Query: 238 KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 297
           KT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ +  L Q
Sbjct: 180 KTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHVKWLNQ 239

Query: 298 RESPE--DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD 348
            E+ E  +  W  LV  G IE +D EEEET MI+MT  DL  +RL       H  +   D
Sbjct: 240 GETDEREEYKWEHLVKGGVIELLDAEEEETVMIAMTPEDLENSRLQSAGIDPHANDGDYD 299

Query: 349 ------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
                       T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN
Sbjct: 300 PAARLKAGINTHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTN 359

Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
           +  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 360 FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 419

Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
           SIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT 
Sbjct: 420 SIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTG 479

Query: 517 VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
           VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FV
Sbjct: 480 VSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFV 539

Query: 575 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
           KVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG
Sbjct: 540 KVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIG 599

Query: 635 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
            L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A 
Sbjct: 600 HLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQ 659

Query: 695 IFLGP 699
           ++LGP
Sbjct: 660 VYLGP 664


>gi|83415499|gb|ABC17957.1| RNA polymerase II second largest subunit, partial [Synchytrium
           macrosporum]
          Length = 710

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/710 (62%), Positives = 548/710 (77%), Gaps = 15/710 (2%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF--AIKAKTITSGLKYSL 102
           KRLDLAGPLL GLFR+ F+K+ +D+  ++ K +D+ + VN++    +++ T+T+GLKY+L
Sbjct: 2   KRLDLAGPLLAGLFRLYFQKVNKDLSKHLTKTLDSKQTVNVRIVAGVRSSTMTNGLKYAL 61

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  A   RAGVSQVLNR TY STLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM
Sbjct: 62  ATGNWGDQTKAMQARAGVSQVLNRYTYVSTLSHLRRLNSPIGRDGKLARPRQLHNTHWGM 121

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VGS    ++EFL+E   E F E+S + I  A KIF
Sbjct: 122 VCPAETPEGQACGLVKNLSLMATISVGSPHDHLIEFLDEEAMERFTEVSASQIEDACKIF 181

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV- 280
           +NG W+GIHRDP M+V+ LR LRR   +  E+ +V D+R KE+RI+ D GR  RPLFIV 
Sbjct: 182 INGSWIGIHRDPAMIVQYLRELRRGSSIPREMSIVWDVRDKEIRIFADAGRIQRPLFIVD 241

Query: 281 -EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            ++QRL    +  +      +  +  W + V +G IE +DTEEEET MI+MT +DL   R
Sbjct: 242 DQEQRLKWSLKPEVVQDFHANQHNFEWDEFVDRGVIELLDTEEEETVMIAMTPHDLSVHR 301

Query: 340 LHPEEAYADT-----YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 394
            H  E Y        YTHCEIHPS+ILGVCASIIPFPDHNQ PRNTYQSAMGKQAMG+++
Sbjct: 302 SHMAEDYEGEVNIHRYTHCEIHPSMILGVCASIIPFPDHNQPPRNTYQSAMGKQAMGVFL 361

Query: 395 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 454
           +NYQ RMDT+  +L+YPQKPL  TRAM++L F +LPAG NAIV IACYSGYNQEDS+IMN
Sbjct: 362 SNYQLRMDTMMNILFYPQKPLGATRAMQYLKFSELPAGQNAIVCIACYSGYNQEDSLIMN 421

Query: 455 QSSIDRGFFRSLFFRSYRDEEKKMG-TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 513
           QSSIDRG FRS+F+R+Y D+EKK+G + + E   +P R NT  M+HGSY KLD+DGL   
Sbjct: 422 QSSIDRGLFRSMFYRTYMDQEKKVGRSAMSETIEKPARENTARMKHGSYSKLDEDGLIAV 481

Query: 514 GTRVSGEDVIIGKTTPISQDEAQGQASR---YTRRDHSISLRHSETGMVDQVLLTTNADG 570
           G  V G+D+++GKT P+SQD+ QGQ  +    T+RD S  LR +E G+VDQVL++TN  G
Sbjct: 482 GETVIGDDILVGKTMPLSQDD-QGQGGQRILQTKRDISKPLRSAENGVVDQVLISTNQSG 540

Query: 571 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 630
            +FVKVRVRS+RIPQIGDKF+SRHGQKGTVGMTY  EDMP+T +GI PD+++NPHAIPSR
Sbjct: 541 YKFVKVRVRSMRIPQIGDKFASRHGQKGTVGMTYRHEDMPFTEQGIAPDLVINPHAIPSR 600

Query: 631 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 690
           MTIG L+EC++ KVAA  G+EGDATPFT++TV  IS+ L + G+Q RGFE +Y+GHTGR+
Sbjct: 601 MTIGHLVECLLSKVAALRGREGDATPFTELTVAEISRELEEYGFQKRGFEVLYHGHTGRK 660

Query: 691 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 740
           L A +F GPT+YQRLKHMVDDKIHSR RGPV  LTRQP EGR+RDGGLRF
Sbjct: 661 LEAQVFTGPTFYQRLKHMVDDKIHSRARGPVTNLTRQPTEGRARDGGLRF 710


>gi|357216631|gb|AET71049.1| RNA polymerase II second largest subunit, partial [Trametes
           sanguinea]
          Length = 658

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/659 (65%), Positives = 525/659 (79%), Gaps = 24/659 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+LL++KR I  L + +E P+ +  W +L+  G IE +D EEEET MI MT  DL  +R
Sbjct: 240 NQQLLLQKRHIENLVRGKEDPDFEYKWDNLIKDGVIELLDAEEEETVMICMTPEDLENSR 299

Query: 340 L-------HPEEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
           L       H +  +           A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 300 LQAAGIDPHADTEFDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 359

Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
           QSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 360 QSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILC 419

Query: 442 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 501
           YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 420 YSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGT 479

Query: 502 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 559
           YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E+G+V
Sbjct: 480 YDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGIV 539

Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
           DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 540 DQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPD 599

Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           II+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG
Sbjct: 600 IIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRG 658


>gi|52699843|gb|AAU86983.1| DNA-dependent RNA polymerase II second largest subunit [Peltula
           obscurans]
          Length = 713

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/711 (61%), Positives = 529/711 (74%), Gaps = 37/711 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+  KRLDLAGPLL  LFR LF KL RD+  Y+QKCV++ ++ NL   +K  TIT+GLK
Sbjct: 1   DHFXKKRLDLAGPLLANLFRGLFAKLXRDIYKYLQKCVESNREFNLNLGVKQSTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPR LHN+ 
Sbjct: 61  YSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRXLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM YITVG AA PI+ F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCYITVGGAADPIVAFMAQRNMEVLEEYEPQRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+H DP  L + + +LRR   ++ EV ++RDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHDDPAHLAQDVVKLRRSKVLSYEVSLIRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVEKQ-------RLLIKKRDI--------IALQQRESPEDGGWHDLVAKGFIEYIDTEEE 323
           ++E +        L++KK  +        + L  R      GW  LV +G +EY+D EEE
Sbjct: 241 VIENEPGNPDHGTLILKKEHLRRIENTKEVPLADRTEENYFGWQQLVNEGVVEYVDAEEE 300

Query: 324 ETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVC 364
           ET M+ MT  DL  +R                     P    A ++THCEIHPS+ILG+C
Sbjct: 301 ETIMVVMTPEDLETSRQIRAGYDVRDENPDLNKRVKTPMNPTAHSWTHCEIHPSMILGIC 360

Query: 365 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 424
           ASIIPFPDHNQSPRNTY SAMGKQAMG    N+  RMDT++ +LYYPQKPL TTR+ME L
Sbjct: 361 ASIIPFPDHNQSPRNTYXSAMGKQAMGXXXXNFPHRMDTMSNILYYPQKPLATTRSMEFL 420

Query: 425 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 484
            FR+LPAG NAIVAIA YSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  + E
Sbjct: 421 KFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGMXIVE 480

Query: 485 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 542
            F +P RS+T+ + HG+Y KLD+DG+  PG RVSGED+IIGKT PIS D E  GQ ++ +
Sbjct: 481 QFEKPMRSDTVRLXHGTYXKLDEDGVINPGVRVSGEDIIIGKTAPISADAEXLGQRTKLH 540

Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
            +RD S  LR +E+G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 541 VKRDXSTPLRSTESGIVDQVLVTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 600

Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 662
           TY QEDMP+T EGI PD+I+ PHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTV
Sbjct: 601 TYRQEDMPFTREGIVPDLIIXPHAIPSRMTIAHLIECQLSKVSALKGFEGDATPFTDVTV 660

Query: 663 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           D++S  L + GYQ RGFE M+NGHTGR+L A IFLGPTYYQRL+HMVD KI
Sbjct: 661 DSVSGLLREHGYQSRGFEVMHNGHTGRKLVAQIFLGPTYYQRLRHMVDXKI 711


>gi|55831371|gb|AAV66544.1| RNA polymerase II second largest subunit [Hygrocybe aff. conica PBM
           918]
          Length = 686

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/686 (63%), Positives = 530/686 (77%), Gaps = 35/686 (5%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K  N+  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKVFNVALAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS +  ++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMACISVGSQSAAVIEFLEEWGLESLEENAHSATP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRD   LVKT+++LRR+ D+ +EV VVRDIR +ELR+ TD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDAANLVKTIKKLRRKRDIESEVSVVRDIRERELRLSTDAGRVLRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQ-----RESPEDG-------GWHDLVAKGFIEYIDTEEEETT 326
           +VE Q+L+++K+ +  L        E   DG        W  LV +G +E +D EEEET 
Sbjct: 240 VVENQQLVLQKKHVKWLIDGTDGVWELDPDGKPVLRRFNWDSLVDRGIVELLDAEEEETV 299

Query: 327 MISMTINDLVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASI 367
           MI+MT  DL  +RL       H  +   D            T+THCEIHPS+ILGVCASI
Sbjct: 300 MIAMTQEDLENSRLQQQGIDPHANDGDFDPAVRLKAGINSHTWTHCEIHPSMILGVCASI 359

Query: 368 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 427
           IPFPDHNQSPRNTYQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTRAME+L FR
Sbjct: 360 IPFPDHNQSPRNTYQSAMGKQAMGIHLTNFLIRMDTMANILYYPQKPLATTRAMEYLRFR 419

Query: 428 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 487
           +LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++R Y D EKK G    E+F 
Sbjct: 420 ELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRCYMDLEKKNGVQQLEEFE 479

Query: 488 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRR 545
           +P R NT+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRR
Sbjct: 480 KPTRENTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRSHTRR 539

Query: 546 DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 605
           D S  L+ +E G+VDQVL+TTNA+G +FVK+RVR+ R+PQIGDKF+SRHGQKGT+G+TY 
Sbjct: 540 DVSTPLKSTENGIVDQVLITTNAEGHKFVKIRVRATRVPQIGDKFASRHGQKGTIGITYR 599

Query: 606 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 665
           QEDMP+T EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++
Sbjct: 600 QEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESV 659

Query: 666 SKALHKCGYQMRGFETMYNGHTGRRL 691
           S  L + GYQ RG E MY+GHTGR+L
Sbjct: 660 STFLRQKGYQSRGLEVMYHGHTGRKL 685


>gi|123979366|gb|ABM81508.1| RNA polymerase II second largest subunit [Pyxine sorediata]
          Length = 704

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/703 (61%), Positives = 533/703 (75%), Gaps = 41/703 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL G FR LF KL +DV  Y++ C++N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAGPFRTLFNKLNKDVEKYLKNCIENNREFNLTLGVKSTTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A+ ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGEQKKASSSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM Y++VG+ +  I+EFL     E  EE  P   P ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYVSVGTPSEGIVEFLLSRQMEPLEEYDPLASPHATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVGIHR P  LV  ++ LRRR  +  EV ++RDIR +E +I TD GR  RPLF++E  
Sbjct: 182 GVWVGIHRSPAHLVLAVQSLRRRHVIEHEVSLIRDIRDREFKILTDQGRVLRPLFVIEND 241

Query: 284 -------RLLIKKRDIIALQ-QRESPEDG----------GWHDLVAKGFIEYIDTEEEET 325
                   L++ K  +  L+  R+ P D           GWH L+ +G +EY+D EEEET
Sbjct: 242 AKEQNYGNLVLTKEHVERLEADRDVPLDMDKEEREQLTFGWHGLINEGVVEYVDAEEEET 301

Query: 326 TMISMTINDLVQAR------LHPEE--------------AYADTYTHCEIHPSLILGVCA 365
            MI MT  DL  +R      + PEE                A T+THCEIHPS+ILG+CA
Sbjct: 302 IMIVMTPYDLNVSRQIQAGYVLPEENDENPNRRVKAPINPTAHTWTHCEIHPSMILGICA 361

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T++++LYYPQKPL TTR+ME L 
Sbjct: 362 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMSHILYYPQKPLATTRSMEFLK 421

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EKK+G    E 
Sbjct: 422 FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKIGMYTMEQ 481

Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 543
           F +P RS+T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + 
Sbjct: 482 FEKPLRSDTLKLKHGTYEKLDDDGIIIPGARVSGEDIIIGKTAPIAPDAEELGQRTKLHN 541

Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
           +RD S  LR +E+G+VDQVLLT N++GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 542 KRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 601

Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
           Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD
Sbjct: 602 YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVD 661

Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           ++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+
Sbjct: 662 SVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 704


>gi|123979404|gb|ABM81527.1| RNA polymerase II second largest subunit [Asahinea scholanderi]
          Length = 701

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/700 (62%), Positives = 534/700 (76%), Gaps = 41/700 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+GL+YSLAT
Sbjct: 2   KRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSPNATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 281
           G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  RPLF+++  
Sbjct: 182 GVWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCRPLFVIDND 241

Query: 282 -----KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEYIDTEEEET 325
                +  L++ K  +  L+  RE+     P+     D GW  LV +G +EY+D EEEET
Sbjct: 242 PRSSNRGNLVLTKEHVQKLELDRENWATTEPDVREEADMGWQGLVKEGVVEYVDAEEEET 301

Query: 326 TMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHPSLILGVCA 365
            MI MT  DL     +QA     EA  D               T+THCEIHPS+ILG+CA
Sbjct: 302 IMIVMTPEDLEISRQLQAGFDMPEANPDELNKRVKAPMNPTAHTWTHCEIHPSMILGICA 361

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMGKQAMG   +NY+ RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 362 SIIPFPDHNQSPRNTYQSAMGKQAMGXXFSNYEQRMDTMANILYYPQKPLATTRSMEFLK 421

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E 
Sbjct: 422 FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQ 481

Query: 486 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 543
           F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ + 
Sbjct: 482 FEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 541

Query: 544 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 603
           +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 542 KRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 601

Query: 604 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 663
           Y QEDMP+T EG+ PDII+NPHAIPSRMTI  LIEC++ KV++  G EGDATPFT+VTVD
Sbjct: 602 YRQEDMPFTSEGMVPDIIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDATPFTEVTVD 661

Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           ++S+ L + GYQ RGFE MYNGHTGR+L   +F GPTYYQ
Sbjct: 662 SVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFXGPTYYQ 701


>gi|103001255|gb|ABF71499.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 691

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/691 (62%), Positives = 527/691 (76%), Gaps = 40/691 (5%)

Query: 50  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 108
           AGPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYSLATGNWG 
Sbjct: 1   AGPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYSLATGNWGD 60

Query: 109 QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 168
           Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61  QKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 169 EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 228
           EGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG
Sbjct: 121 EGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVG 180

Query: 229 IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 283
           +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++       
Sbjct: 181 VHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTN 240

Query: 284 --RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISM 330
              L++ K         +D+ A+   E  E    GW  LV  G +EY+D EEEET MI M
Sbjct: 241 CGNLVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVM 300

Query: 331 TINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFP 371
           T  DL  +R                     P    A T+THCEIHPS+ILG+CASIIPFP
Sbjct: 301 TPEDLEISRQIQAGYAMPETSDDPNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFP 360

Query: 372 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
           DHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 361 DHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 420

Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
           G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P R
Sbjct: 421 GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMR 480

Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 549
           S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S 
Sbjct: 481 SDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVST 540

Query: 550 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 609
            LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 541 PLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 600

Query: 610 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           P+T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L
Sbjct: 601 PFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLL 660

Query: 670 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 700
            + GYQ RGFE MYNGHTGR+L A +FLGPT
Sbjct: 661 REHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 691


>gi|109289335|gb|ABG29161.1| RNA polymerase II largest subunit, partial [Asterotremella
           humicola]
          Length = 706

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/708 (62%), Positives = 537/708 (75%), Gaps = 35/708 (4%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFR+LF+KLTRDV  ++QKCV+  K+  L  AIK   IT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRILFKKLTRDVYRHLQKCVETHKEFTLVNAIKPGIITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG QA A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQAKAMQARAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM YI+VGS + P++EFLEEWG E+  E S A  P AT
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSYISVGSYSAPVMEFLEEWGLEDQTEYSNA--PSAT 178

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+GIHRD   L + L  +RR   +  EV +VRDIR +ELR+YTD GR  RPLF
Sbjct: 179 KVFVNGVWMGIHRDAVTLHQNLLSMRRGGQLKHEVSIVRDIRERELRLYTDAGRVCRPLF 238

Query: 279 IV-EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
           IV E Q L++++  I  + + E  E   W ++++ G +EY+D EEEET +I+M   DL  
Sbjct: 239 IVNEDQTLMLQRSHIERIDELEEEEGKAWEEMLSTGIVEYVDAEEEETILIAMVQEDLEN 298

Query: 338 AR-LHP-EEAYAD------------------------TYTHCEIHPSLILGVCASIIPFP 371
           AR  H  EE   D                          THCEIHPS+ILGVCASIIPFP
Sbjct: 299 ARKFHTREEVNRDHAAXXXXXXXXXXXXXXXXXXXXXXXTHCEIHPSMILGVCASIIPFP 358

Query: 372 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
           DHNQSPRNTYQSAMGKQAMGIY+TNYQ RMDT+A +LYYPQ PL TT++M++L F +LPA
Sbjct: 359 DHNQSPRNTYQSAMGKQAMGIYLTNYQLRMDTMANILYYPQSPLATTQSMKYLKFSELPA 418

Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
           G NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D EK +G    E F +P+R
Sbjct: 419 GQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRAYTDTEKMVGMQKVEAFEKPNR 478

Query: 492 SNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRD 546
             T+ M+HG    Y KLD DGL  P T V+G+D+IIGKT PI    +E   +++ +T+RD
Sbjct: 479 DETLRMKHGPSDRYAKLDGDGLITPATNVNGDDIIIGKTAPIPPGSEELGQRSATHTKRD 538

Query: 547 HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 606
            S  ++ +E G+VDQV++TTNADGL+FVK+R+RS R+PQIGDKF+SRHGQKGT+G+TY Q
Sbjct: 539 VSTPMKSTEQGVVDQVMITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQ 598

Query: 607 EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 666
           EDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ K+A   G+EGDATPFTD+TV+++S
Sbjct: 599 EDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLTGREGDATPFTDLTVESVS 658

Query: 667 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
           K L + GYQ RG E MY+GHTG++L A ++ GPTYYQRLKHMVDDKI 
Sbjct: 659 KLLRERGYQSRGLEVMYHGHTGKKLRAQVYFGPTYYQRLKHMVDDKIQ 706


>gi|52699804|gb|AAU86964.1| DNA-dependent RNA polymerase II second largest subunit [Dibaeis
           baeomyces]
          Length = 711

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/714 (60%), Positives = 535/714 (74%), Gaps = 46/714 (6%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G KRLDLAGPL+ GLFR LF KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GL+
Sbjct: 1   DXXGKKRLDLAGPLMAGLFRTLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLR 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM  +TVGS + PI++F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQRNMEILEEYEPLRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG WVG+HRDP  LV T+  LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181 KVFVNGVWVGVHRDPAHLVSTVMSLRRRGLISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 320
           +++       K  L++ K  +  L+  ++ P D           GW  L+ +G +EY+D 
Sbjct: 241 VIDNDAKSPNKGSLVLTKELVSRLEDDKDLPADMDPDEKAAKTMGWDGLIKRGVVEYLDA 300

Query: 321 EEEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPS 358
           EEEET MI MT  DL                      V+A L+P    A T+THCEIHPS
Sbjct: 301 EEEETVMIVMTPEDLDISRQLQAGYQLPETTDDPNKRVKAPLNPT---AHTWTHCEIHPS 357

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILGVCASIIPFPDHNQSPRNTYQSAMG QAMG     +  RMD    +LYYPQKPL TT
Sbjct: 358 MILGVCASIIPFPDHNQSPRNTYQSAMGXQAMGXXXXXFSERMDNAXNILYYPQKPLATT 417

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMN SSIDRG FRSL++R+Y D+EK++
Sbjct: 418 RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNXSSIDRGLFRSLYYRTYTDQEKRV 477

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 537
           G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG R+SGED+IIGKT PI+ D E  G
Sbjct: 478 GMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRISGEDIIIGKTEPIAPDSEELG 537

Query: 538 QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           Q ++ + +RD S  LR +E G+VD+V+L+TNA+GLRFVKVR R+ +IPQIGDKF+SRHGQ
Sbjct: 538 QRTKLHVKRDKSTPLRTTENGLVDKVMLSTNAEGLRFVKVRTRTTKIPQIGDKFASRHGQ 597

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATP
Sbjct: 598 KGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATP 657

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           FT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD
Sbjct: 658 FTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 711


>gi|46411494|gb|AAS94317.1| RNA polymerase II [Flavoparmelia caperata]
          Length = 705

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/705 (60%), Positives = 532/705 (75%), Gaps = 38/705 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPL+  LFR+LF+KLT+D+  Y+QKCV+  ++ NL   +K+  +T+
Sbjct: 1   DDRDHFGKKRLDLAGPLMATLFRLLFQKLTKDIYKYLQKCVEGNREFNLTLGVKSNVLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLRYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+     E  E   P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSDPIVEFMLARNMEYLEGYEPTRSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG WVG+H +P  LV +++ LRR   ++ E+ ++RDIR +E +I+TD GR  R
Sbjct: 181 DATKVFVNGVWVGVHHNPSALVTSVQDLRRSSVLSHEISLIRDIRDREFKIFTDAGRVCR 240

Query: 276 PLFIVE-------KQRLLIKKRDIIALQQRESPEDG---------GWHDLVAKGFIEYID 319
           PLF+++       K  L++ K  I  L+  + P+           GW  LV  G +E++D
Sbjct: 241 PLFVIDNDNHSANKGNLVLTKEMINRLEDDKDPDVDEKVRSKNFFGWDGLVMSGAVEFLD 300

Query: 320 TEEEETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLI 360
            EEEET MI MT  DL     VQA  H EEA A+              T+THCEIHPS+I
Sbjct: 301 AEEEETVMIVMTPEDLEISRQVQAGYHVEEASAEPNARVKARIGAGQHTWTHCEIHPSMI 360

Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
           LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG         M T+A +LYYPQKPL TTR+
Sbjct: 361 LGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXXXXXXXXMATMANILYYPQKPLATTRS 420

Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
           ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G 
Sbjct: 421 MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGM 480

Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 539
            V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 481 SVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 540

Query: 540 SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
           ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 541 TKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 600

Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
           T+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDATPFT
Sbjct: 601 TIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDATPFT 660

Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
           +VTVD++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQ
Sbjct: 661 EVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQ 705


>gi|52699839|gb|AAU86981.1| DNA-dependent RNA polymerase II second largest subunit [Ochrolechia
           juvenalis]
          Length = 712

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/714 (60%), Positives = 539/714 (75%), Gaps = 46/714 (6%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           D  G KRLDLAGPL+ GLFRMLF+KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GLK
Sbjct: 1   DXXGKKRLDLAGPLMAGLFRMLFKKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WG++CPAETPEGQACGLVKNLALM  +TVGS + PI++F+ +   E  EE  P   P AT
Sbjct: 121 WGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMIQRSMEVLEEYEPLRSPNAT 180

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           KIFVNG WVG+HR+P  LV+T+++LRR   ++ EV +VRDIR +E +I+TD GR +RPLF
Sbjct: 181 KIFVNGVWVGVHRNPTDLVRTVQKLRRSGMISHEVSLVRDIRDREFKIFTDAGRVTRPLF 240

Query: 279 IVE-------KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 320
           +++       K  L++ K  +  L+  ++ P D           GW  LV +G +EY+D 
Sbjct: 241 VIDNDPNSSNKGNLVLTKELVNRLEDDKDLPADMDPDEKATKTMGWDGLVKQGVVEYLDA 300

Query: 321 EEEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPS 358
           EEEET MI MT  DL                      V+A ++P    A T+THCEIHPS
Sbjct: 301 EEEETVMIVMTPEDLDISRQLQAGYQMPETTDDPNKRVKAPMNPT---AHTWTHCEIHPS 357

Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
           +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG        RMDT++ +LYYPQKPL TT
Sbjct: 358 MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXXXXXXXRMDTMSNILYYPQKPLATT 417

Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
           R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++
Sbjct: 418 RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRI 477

Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 537
           G  V E F +P RS+T+ ++HG+YDKL DDG+  PG RVSGED+IIGKT PI+ D E  G
Sbjct: 478 GMSVVEQFEKPMRSDTLKLKHGTYDKLXDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELG 537

Query: 538 QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
           Q ++ + +RD S  LR +E G+VD+VLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 538 QRTKLHIKRDASTPLRTTEXGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 597

Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
           KGT+G+TY QEDMP+T EG+ PD+I+ PHAIPSRMTI   IEC + KV++  G EGDATP
Sbjct: 598 KGTIGITYRQEDMPFTSEGVVPDLIIXPHAIPSRMTIAHXIECQLSKVSSLRGFEGDATP 657

Query: 657 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
           FT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+ MVD
Sbjct: 658 FTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPTYYQRLRXMVD 711


>gi|357216651|gb|AET71059.1| RNA polymerase II second largest subunit, partial [Coriolopsis
           gallica]
          Length = 657

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/657 (65%), Positives = 521/657 (79%), Gaps = 25/657 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VG+ + P++EFLEEWG E+ EE + A  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKTLR+LRR+ D+N EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPVSLVKTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+LL++KR I  L + ++ PE    W +L+ +G IE +D EEEET MI MT  DL  +R
Sbjct: 240 NQQLLVQKRHIENLVRGKDDPEFPYNWDNLIKEGVIELLDAEEEETVMICMTPEDLENSR 299

Query: 340 L-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           L       H +E   D            T+THCEIHPS+ILGVCASIIPFPDHNQSPRNT
Sbjct: 300 LQASGIDPHADEENDDPSARLKAATSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNT 359

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 360 YQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAIL 419

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG
Sbjct: 420 CYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHG 479

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E G+
Sbjct: 480 TYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGI 539

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITP
Sbjct: 540 VDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITP 599

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           DI++NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFTD+TV+++SK L + GY 
Sbjct: 600 DIVINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVESVSKFLRQKGYH 656


>gi|123979390|gb|ABM81520.1| RNA polymerase II second largest subunit [Fissurina insidiosa]
          Length = 703

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/702 (61%), Positives = 536/702 (76%), Gaps = 40/702 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           +RLDLAGPL+  LFR LF KL +DV  Y+Q+CV+ GK+ NL   +K+ T+T+GLKYSLAT
Sbjct: 2   ERLDLAGPLMANLFRTLFNKLNKDVYKYLQRCVELGKEFNLNLGVKSTTLTNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNW  Q  AA  +AGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWTEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTPLGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGL+KNLALM YITVGS   PI+EF+ + G E  EE  P   P  TK+FVN
Sbjct: 122 PAETPEGQACGLIKNLALMCYITVGSPGEPIIEFMVQRGMEVLEEYEPTRAPHITKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 281
           G WVG+HRDP  L   +  LRR+  V+ EV +VRDIR +E +I+TD GR +RPLF+++  
Sbjct: 182 GVWVGVHRDPAHLYNVVLGLRRKNMVSHEVSLVRDIREQEFKIFTDAGRVARPLFVIDND 241

Query: 282 -----KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEET 325
                K +L++ K  ++ L+  R+ PE+           GW  L+  G +EY+D EEEET
Sbjct: 242 SRSPNKGQLVLTKALVMKLEDDRDLPENMDPDEKKEKYFGWDGLIRTGAVEYLDAEEEET 301

Query: 326 TMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCAS 366
            MI+MT +DL     VQA   P E  +D               +THCEIHPS+ILG+CAS
Sbjct: 302 VMIAMTPDDLEVSRQVQAGYAPPEPSSDPNARVKAPINMAAHAWTHCEIHPSMILGICAS 361

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMGKQAMGI++TN+  RMDT+A VLYYPQKPL TTR+ME L F
Sbjct: 362 IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFDERMDTMANVLYYPQKPLATTRSMEFLKF 421

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  + E F
Sbjct: 422 RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYIEQEKRVGMSLVEQF 481

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 544
            +P RS T+ ++HG+Y+KLD+DGL  PG RVSGED+IIGKT PI+ D E  GQ ++ +T+
Sbjct: 482 EKPLRSETLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHTK 541

Query: 545 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
           RD S  LR +E G+VD+ LLTTN +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 542 RDASTPLRSTENGIVDKALLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 601

Query: 605 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            QEDMP+T EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+
Sbjct: 602 RQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDS 661

Query: 665 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           +S+ L + GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+
Sbjct: 662 VSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLR 703


>gi|113957204|gb|ABI49108.1| RNA polymerase II second largest subunit [Anaptychia palmatula]
          Length = 707

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/707 (61%), Positives = 532/707 (75%), Gaps = 41/707 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPLL GLFR LF KLT+DV  Y++ C++N K+  L   IK+ T+T+
Sbjct: 1   DDRDHFGKKRLDLAGPLLAGLFRTLFNKLTKDVEKYLKVCIENNKEFILTLGIKSSTLTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61  GLKYSLATGNWGEQKEAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNLALM +++VG+ +  I+ FL +   E+ EE  P   P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLALMCHVSVGTPSDGIVPFLLQRQMESLEEYEPHTSP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATKIFVNG WVG+HR+P  LV  ++ LRR+  +  EV ++RDIR +E RI TD GR  R
Sbjct: 181 NATKIFVNGVWVGVHRNPVHLVNAVQTLRRKHVLEPEVSLIRDIRDREFRILTDQGRVLR 240

Query: 276 PLFIVEKQ-------RLLIKKRDIIALQQRES-PEDG----------GWHDLVAKGFIEY 317
           PLF+V+          L+  K     L   +S P D           GW+ L+ +G +EY
Sbjct: 241 PLFVVDNDAKSPNCGNLVFNKEHSQRLDDDDSVPFDMDKEVREKMIFGWNGLINEGVVEY 300

Query: 318 IDTEEEETTMISMTINDLVQAR--------------------LHPEEAYADTYTHCEIHP 357
           +D EEEET MI MT  DL  +R                      P    A T+THCEIHP
Sbjct: 301 VDAEEEETVMIVMTPQDLAMSRQLQAGYALAEPDPDEPNRRVTAPINPTAHTWTHCEIHP 360

Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
           S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG        RM+T++++LYYPQKPL T
Sbjct: 361 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXXXXXXXRMETMSHILYYPQKPLAT 420

Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
           TR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK+
Sbjct: 421 TRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKR 480

Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 536
           +GT V E F +P RS+T+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481 IGTNVLERFEKPMRSDTLKLKHGTYDKLDEDGLIIPGARVSGEDIIIGKTAPIAPDAEEM 540

Query: 537 GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
           GQ ++ +T+RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541 GQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
           QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 601 QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 660

Query: 656 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 702
           PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYY
Sbjct: 661 PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 707


>gi|396941947|gb|AFN89690.1| RNA polymerase II, partial [Dipodascus albidus]
          Length = 683

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/682 (62%), Positives = 528/682 (77%), Gaps = 33/682 (4%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFR+LF+KLTRD+  Y+QKCV+  KD NL  A+K+ TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAQLFRILFKKLTRDIYRYMQKCVETNKDFNLTLAVKSNTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A  TRAGVSQVLNR T++STLSHLRR N+PIGR+GK+A+PRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAMSTRAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM  I+VG+ ++PI+ FLEEWG E  E+  P   P AT++FVN
Sbjct: 122 PAETPEGQACGLVKNLSLMSCISVGTPSHPIVCFLEEWGMEPLEDYVPHTSPNATRVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 281
           G WVG+HRDP ++  T++ LRRR D++ EV +VRDIR KE RI TD GR  RPLF+V+  
Sbjct: 182 GVWVGVHRDPTLIADTMKALRRRGDISAEVSIVRDIRSKEFRILTDAGRVFRPLFVVDSD 241

Query: 282 -----KQRLLIKK---RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMT 331
                K  L ++K   + I+  Q+  + +DG  GW  LV  G +EYID EEEET MI+MT
Sbjct: 242 SNSPNKGELKLRKEHVQKILDSQEGLAGDDGPVGWAYLVNNGIVEYIDGEEEETVMIAMT 301

Query: 332 INDLVQAR-----------------LHPEEA-YADTYTHCEIHPSLILGVCASIIPFPDH 373
             DL  +R                 + P  + +A T+THCEIHPS+ILG+CASIIPFPDH
Sbjct: 302 PEDLEMSRQMQYGVEVADEVDTLQRVKPTSSLHAHTWTHCEIHPSMILGICASIIPFPDH 361

Query: 374 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 433
           NQSPRNTYQSAMGKQAMG+Y+TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG 
Sbjct: 362 NQSPRNTYQSAMGKQAMGVYLTNYSVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQ 421

Query: 434 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 493
           NAIVAI CYSGYNQEDS+IMNQ SIDRG FRSLFFRSY D+E+++G  V E+F +P R++
Sbjct: 422 NAIVAILCYSGYNQEDSMIMNQGSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRAD 481

Query: 494 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISL 551
           T+ ++HG+Y+KLD+DGL  PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  L
Sbjct: 482 TLRLKHGTYEKLDEDGLIAPGIRVSGEDIIIGKTAPIPPDAEELGQRTKYHTKRDVSTPL 541

Query: 552 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 611
           R +E GMVDQVLLTTN +GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+
Sbjct: 542 RSTEHGMVDQVLLTTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPF 601

Query: 612 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 671
           +  G+ PD+I+NPHAIPSRMT+  LIEC++ KV+A  G EGDATPFTDVTVD IS  L +
Sbjct: 602 SANGVVPDLIINPHAIPSRMTVAHLIECLLSKVSALSGLEGDATPFTDVTVDAISTLLRQ 661

Query: 672 CGYQMRGFETMYNGHTGRRLTA 693
            G+  RGFE MY+GHTGR+L A
Sbjct: 662 NGFHSRGFEVMYHGHTGRKLMA 683


>gi|317408995|gb|ADV17879.1| RNA polymerase II second largest subunit [Veluticeps fimbriata]
          Length = 682

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/682 (64%), Positives = 528/682 (77%), Gaps = 27/682 (3%)

Query: 38  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 97
           D DH+G KRLD   PLL  LFR +FRKLT+DV  Y+QKCV+  K  NL   +K  TIT+G
Sbjct: 1   DWDHFGKKRLDPRCPLLANLFRNVFRKLTKDVYRYLQKCVETPKWFNLSLEVKHNTITNG 60

Query: 98  LKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 156
           LKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR ++P+GR+GK+ KPRQLHN
Sbjct: 61  LKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCDTPLGRKGKITKPRQLHN 120

Query: 157 SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 216
           + WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P 
Sbjct: 121 THWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP- 179

Query: 217 ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 276
            TK+FVNG W+G+H DP  LV+T+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RP
Sbjct: 180 YTKVFVNGVWMGVHGDPGNLVRTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRP 239

Query: 277 LFIVEKQRLLIKKRDIIALQQ---RESPED-GGWHDLVAKGFIEYIDTEEEETTMISMTI 332
           LFIVE Q+L ++K+ I  L Q    + PED   W  LV  G IE +D EEEET MISMT 
Sbjct: 240 LFIVENQQLALQKKHIRWLNQGYREDDPEDIWKWDQLVKNGVIELLDAEEEETVMISMTP 299

Query: 333 NDLVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDH 373
            DL  +RL       H  E   D            T+THCEIHPS+ILGVCASIIPFPDH
Sbjct: 300 EDLENSRLQSAGIDTHLNEGEYDPAVRLKAPTQGHTWTHCEIHPSMILGVCASIIPFPDH 359

Query: 374 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 433
           NQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 360 NQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 419

Query: 434 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 493
           NAIVAI CYSGYNQ DSVIMNQSSIDRG FRS+++RSY D E K G    E+F +P R  
Sbjct: 420 NAIVAILCYSGYNQVDSVIMNQSSIDRGLFRSIYYRSYMDLEIKSGIQQLEEFEKPTRDT 479

Query: 494 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISL 551
           T+ M+HG+YDK++DDGL  PGT V+GED+IIGKT PI  D E  GQ SR +TRRD S +L
Sbjct: 480 TLRMKHGTYDKIEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRSRLHTRRDVSTAL 539

Query: 552 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 611
           + +E+G+VDQVL+TTN+DG +FVKVRVR+ R+PQIGDKF+SRHGQKGT+G+TY QEDMP+
Sbjct: 540 KSTESGIVDQVLITTNSDGQKFVKVRVRATRVPQIGDKFASRHGQKGTIGITYRQEDMPF 599

Query: 612 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 671
           T EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L +
Sbjct: 600 TAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQ 659

Query: 672 CGYQMRGFETMYNGHTGRRLTA 693
            GYQ RG E MY+GHTGR+L A
Sbjct: 660 KGYQSRGLEVMYHGHTGRKLQA 681


>gi|123979394|gb|ABM81522.1| RNA polymerase II second largest subunit [Thelotrema lepadinum]
          Length = 703

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/702 (61%), Positives = 532/702 (75%), Gaps = 40/702 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPL+  LFR LF +LT+DV  Y+QKCV++ +  N+   +K+ T+T+GLKYSLAT
Sbjct: 2   KRLDLAGPLMASLFRNLFNRLTKDVYKYLQKCVESNQPFNVTLGVKSTTLTNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNW  Q  AA  +AGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWTEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTPLGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVGS   PI+EF+ +   E  EE  P   P  TK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQRNMELLEEYEPTRSPHITKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 281
           G WVG+HRDP  L  T+  LRRR  ++ EV ++RDIR +E +I+TD GR SRPLF+++  
Sbjct: 182 GVWVGVHRDPTHLYNTVLSLRRRNMISHEVSLIRDIRDQEFKIFTDAGRVSRPLFVIDND 241

Query: 282 -----KQRLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDTEEEET 325
                K  L++ K  I  L+  RE P D           GW  L+  G +EY+D EEEET
Sbjct: 242 NRSPSKGSLMLTKEHIHRLEDDRELPTDLDPDEKQERYFGWEGLIKAGAVEYLDAEEEET 301

Query: 326 TMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCAS 366
            MI+MT  DL     VQA   P E   D              T+THCEIHPS+ILG+CAS
Sbjct: 302 VMIAMTPEDLEISRQVQAGYAPPEPSDDPNSRVKAPVNLAAHTWTHCEIHPSMILGICAS 361

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 362 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  + E F
Sbjct: 422 RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRVGMSLVEQF 481

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 544
            +P RS T+ ++HG+Y+KLDDDGL  PG RVSGEDVIIGKT PI+ D E  GQ ++ + +
Sbjct: 482 EKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDTEELGQRTKLHNK 541

Query: 545 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
           RD S  LR +E G+VD+VLLTTN +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY
Sbjct: 542 RDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 601

Query: 605 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            QEDMP+T EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+
Sbjct: 602 RQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDS 661

Query: 665 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           +S+ L + GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+
Sbjct: 662 VSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLR 703


>gi|52699868|gb|AAU86995.1| DNA-dependent RNA polymerase II second largest subunit [Rhytisma
           acerinum]
          Length = 708

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/707 (61%), Positives = 539/707 (76%), Gaps = 42/707 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFR LFR+LT+DV  Y+Q+CV+N ++ NL   +K+ T+T+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAKLFRGLFRRLTQDVYKYLQRCVENNREFNLTLGVKSTTLTNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSPNATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 281
           G WVG+HRDP  LVKT++ LRR+  ++ EV ++RDIR +E +I+TD GR  RPLF+V+  
Sbjct: 182 GVWVGVHRDPAHLVKTVQDLRRQHMISHEVSLIRDIRDREFKIFTDAGRVCRPLFVVDND 241

Query: 282 -----KQRLLIKKRDIIALQ------------QRESPEDGGWHDLVAKGFIEYIDTEEEE 324
                K  L++ K  I  L+            QRE     G+  L+  G +EY+D EEEE
Sbjct: 242 HDSPNKGNLVLNKTHISRLEDDQTMPINMDEAQREEHGYFGFKGLIDNGVVEYVDAEEEE 301

Query: 325 TTMISMTINDL-----VQA--RLHPEEA-------------YADTYTHCEIHPSLILGVC 364
           T MI MT  DL     +QA  ++ P+E+              A  +THCEIHPS+ILG+C
Sbjct: 302 TIMIVMTPEDLDISRQIQAGYQIQPDESGDLNKRVKAPVNPTAHIWTHCEIHPSMILGIC 361

Query: 365 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 424
           ASIIPFPDHNQSPRNTYQSAMG QAMG  +TN+  RMDT++ +LYYPQKPL TTR+ME L
Sbjct: 362 ASIIPFPDHNQSPRNTYQSAMGXQAMGXXLTNFDXRMDTMSNILYYPQKPLATTRSMEFL 421

Query: 425 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 484
            FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  + E
Sbjct: 422 KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNLVE 481

Query: 485 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 542
            F +P R++T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++ +
Sbjct: 482 AFEKPYRNDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPLAPDNEELGQRTKGH 541

Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
            +RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 542 VKRDASTPLRSTENGIVDQVLVTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 601

Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 662
           TY QEDMP+T +GI PDII+NPHAIPSRMTI  LIEC + KV    G EGDATPFT+VTV
Sbjct: 602 TYRQEDMPFTRQGIVPDIIINPHAIPSRMTIAHLIECQLSKVGTLRGLEGDATPFTEVTV 661

Query: 663 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           D++SK L   GYQ RGFE MY+GHTGR++ A +FLGPTYYQRL+HMV
Sbjct: 662 DSVSKLLRDHGYQSRGFEVMYHGHTGRKMNAQVFLGPTYYQRLRHMV 708


>gi|45545325|gb|AAS67510.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Dermatocarpon reticulatum]
          Length = 907

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/752 (57%), Positives = 547/752 (72%), Gaps = 47/752 (6%)

Query: 1   MLPHVGT--GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 58
            LPH+G    +  +++KA++ GY+++R+L CALGR   DDRDH G KRLDLAGPL+  LF
Sbjct: 158 FLPHIGQEPSNSSQSRKAFFLGYMVNRMLKCALGRSEPDDRDHLGKKRLDLAGPLMANLF 217

Query: 59  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 117
           R+ F+K+ RD   Y+QK V++ +++NL+  +K+  IT+GLKYSLATGNWG Q      +A
Sbjct: 218 RLQFQKVVRDFSRYMQKQVESDREINLKVGLKSNIITNGLKYSLATGNWGDQKKVNQAKA 277

Query: 118 GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 177
           GVSQVL+R T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG +CPAETPEGQACGLVK
Sbjct: 278 GVSQVLSRYTFASTLSHLRRTNAPIGRDGKIAKPRQLHNTHWGYVCPAETPEGQACGLVK 337

Query: 178 NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH-RDPEML 236
           NLALM  +T      P+++++ E   E+ EE  P + PQATK+F+NG W  +  +DP+ L
Sbjct: 338 NLALMTMVTNSHNTEPLVDYILEQDVESLEEWEPRLSPQATKVFLNGVWFAVVIKDPKHL 397

Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKK 289
           V   + LRR   ++ ++ +V DIR KE RI  D GR  RPLF+VE+         L++ K
Sbjct: 398 VNRFKELRRTDQLDPQISIVWDIRDKEFRISGDAGRIIRPLFVVERDPSKDNEGNLVLNK 457

Query: 290 RDIIAL--------------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
             I  L              Q +E P   GW DL+ +G +EY+D EEEET MI MT  DL
Sbjct: 458 NHIQRLDNTVYYTEAQRPIEQWQEPP--FGWKDLLKEGVVEYLDAEEEETAMIIMTPEDL 515

Query: 336 VQ-----------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
                              AR  P    +A T+THCEIHPS+ILGVCASIIPFPDHNQSP
Sbjct: 516 NTSNAKHMGRTTEETDDPLARYDPLLNPHAHTFTHCEIHPSMILGVCASIIPFPDHNQSP 575

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL  T +ME+L FR+LPAG NAIV
Sbjct: 576 RNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLARTMSMEYLKFRELPAGQNAIV 635

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y+D+EK +G  V E F +P RS+T+ M
Sbjct: 636 AIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDQEKVVGHNVVEQFEKPTRSDTLRM 695

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
           +HG+YDK+D DG+   G RVSGED+IIGKT P++ D E  GQ  + + +RD S  LR +E
Sbjct: 696 KHGTYDKIDADGIVEVGQRVSGEDIIIGKTAPMAPDAEELGQRQKQHLKRDVSTPLRSTE 755

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
           +G+VDQVL+TT+ DG +FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 756 SGIVDQVLVTTSGDGQKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREG 815

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           + PD+I+NPHAIPSRMTI  LIEC + KVA   G EGDATPFT VTV N+S  L   GYQ
Sbjct: 816 VVPDLIINPHAIPSRMTIAHLIECQLSKVATLRGDEGDATPFTKVTVTNVSNILRSMGYQ 875

Query: 676 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
            RGFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 876 SRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 907


>gi|88601062|gb|ABD46527.1| RNA polymerase II second largest subunit, partial [Tulasnella
           pruinosa]
          Length = 656

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/661 (64%), Positives = 518/661 (78%), Gaps = 27/661 (4%)

Query: 57  LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 115
           LFRMLFRKLT+DV  ++QKCV+  KD  L  A+K  TIT GLKYSLATGNWG Q  +   
Sbjct: 1   LFRMLFRKLTKDVFRHLQKCVEANKDFTLASAVKHTTITQGLKYSLATGNWGDQKKSMSA 60

Query: 116 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 175
           +AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGL
Sbjct: 61  KAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGL 120

Query: 176 VKNLALMVYITVGSAAYPILEFLEEWGTENFEE--ISPAVIPQATKIFVNGCWVGIHRDP 233
           VKNLALM  I+VGS + PI+EFLEEWG E  EE  ++PA    ATK+FVNG W+G+HRD 
Sbjct: 121 VKNLALMSCISVGSLSAPIIEFLEEWGLEPLEEHSLNPA---SATKVFVNGVWMGVHRDA 177

Query: 234 EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
             LVKTLRRLRR+ D++ EV +VRDIR +ELR+YTD GR  RPLFIVE Q LLIKK+ I 
Sbjct: 178 HELVKTLRRLRRKDDISAEVSIVRDIRERELRLYTDAGRVCRPLFIVEDQELLIKKKHIY 237

Query: 294 ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD----- 348
            LQ     +  GW  L+ +G IE +D EEEET MI MT  DL +A   P++ + D     
Sbjct: 238 KLQN-SGADAFGWSSLLNEGVIELLDAEEEETVMICMTSEDL-EASARPKDEFMDDPEFD 295

Query: 349 ------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
                       T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN
Sbjct: 296 PAKRVKAQMNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTN 355

Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
           YQ RMDT++ +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 356 YQIRMDTMSNILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 415

Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
           SIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT 
Sbjct: 416 SIDRGLFRSMYYRSYMDVEKKSGNQNLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTG 475

Query: 517 VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 574
           VSGED+IIGKT PI  D E  GQ ++ +++RD S  L+ +E G++DQVL+TTN +GL+FV
Sbjct: 476 VSGEDIIIGKTAPIPPDSEELGQRTQTHSKRDVSTPLKSTENGIIDQVLITTNGEGLKFV 535

Query: 575 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 634
           K+RVRS RIPQ+GDKF+SRHGQKGTVG+TY QEDMP+T +GITPDII+NPHAIPSRMTIG
Sbjct: 536 KIRVRSTRIPQVGDKFASRHGQKGTVGITYRQEDMPFTAQGITPDIIINPHAIPSRMTIG 595

Query: 635 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 694
            L+EC++ K+A  +G EGDATPFTD+TV+++S  L   GYQ RG E MY+GHTG++L A 
Sbjct: 596 HLVECLLSKLATLLGNEGDATPFTDLTVESVSTLLRAKGYQSRGLEVMYHGHTGKKLQAQ 655

Query: 695 I 695
           +
Sbjct: 656 V 656


>gi|78100236|gb|ABB20919.1| RNA polymerase II second largest subunit, partial [Hydnum
           albomagnum]
          Length = 664

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/664 (64%), Positives = 520/664 (78%), Gaps = 26/664 (3%)

Query: 53  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 111
           LL  LFRMLFRKLT+DV  ++QKCV+  KD N+  A+K+ TIT+GLKYSLATGNWG Q  
Sbjct: 1   LLASLFRMLFRKLTKDVYRHLQKCVETHKDFNISIAVKSNTITNGLKYSLATGNWGDQKK 60

Query: 112 AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 171
           +  ++AGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WGM+CPAETPEGQ
Sbjct: 61  SMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGRDGKIAKPRQLHNTHWGMVCPAETPEGQ 120

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNL+LM  I+VGS + P++EFL+EWG E+ EE + A    ATK+FVNG W+G+HR
Sbjct: 121 ACGLVKNLSLMACISVGSLSAPVIEFLQEWGLESLEENANAH-GSATKVFVNGVWMGVHR 179

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 291
           D   LVKTLRRLRR+ D+++EV +VRDIR KELR+YTD GR  RPLFIVE Q+LL+KK  
Sbjct: 180 DAPNLVKTLRRLRRKDDISSEVSIVRDIREKELRLYTDAGRVCRPLFIVENQQLLLKKEH 239

Query: 292 IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA------ 345
           +  L  +   +   W  LV  G IE +D EEEET MI MT +DL  +R +   A      
Sbjct: 240 VNMLNDKNRTDPYKWTHLVKDGVIELLDAEEEETVMICMTPDDLENSRTNQAVAAGYVSN 299

Query: 346 ----------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 389
                            A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 300 AGASDHDVAVRVRSTMTAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQA 359

Query: 390 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 449
           MGIY+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA VAI CYSGYNQED
Sbjct: 360 MGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNATVAILCYSGYNQED 419

Query: 450 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 509
           SVIMNQSSIDRG FRS+++RSY D EKK+G L  E+F +P R  T+ M+HG+Y+KL+DDG
Sbjct: 420 SVIMNQSSIDRGLFRSMYYRSYTDAEKKVGVLPLEEFEKPTRDTTLRMKHGTYEKLEDDG 479

Query: 510 LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTN 567
           L  PGT V+GED+IIGKT P+  D E  GQ  R +TRRD S  L+ +E G+VDQVL+TTN
Sbjct: 480 LIAPGTGVAGEDIIIGKTAPLPPDSEELGQRMRTHTRRDVSTPLKSTENGIVDQVLVTTN 539

Query: 568 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 627
            DGL+FVK+R+RS RIPQ+GDKF+SRHGQKGTVG+TY  EDMP+T EGITPDII+NPHAI
Sbjct: 540 QDGLKFVKIRIRSTRIPQVGDKFASRHGQKGTVGITYRHEDMPFTAEGITPDIIINPHAI 599

Query: 628 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 687
           PSRMTIG LIEC++ K+A  +G EGDATPFT++TV+++S+ L + GYQ RG E MY+GH+
Sbjct: 600 PSRMTIGHLIECLLSKLATLIGNEGDATPFTELTVESVSQLLLQNGYQSRGLEVMYHGHS 659

Query: 688 GRRL 691
           GR+L
Sbjct: 660 GRKL 663


>gi|357216623|gb|AET71045.1| RNA polymerase II second largest subunit, partial [Trametes
           hirsuta]
          Length = 657

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/657 (65%), Positives = 521/657 (79%), Gaps = 25/657 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q     ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+LL++K+ I  L + +E PE +  W +L+  G IE +D EEEET MI MT  DL  +R
Sbjct: 240 NQQLLLQKKHIENLVRGKEDPEFEYKWDNLIKDGVIELLDAEEEETVMICMTPEDLENSR 299

Query: 340 L-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           L       H  +   D            T+THCEIHPS+ILGVCASIIPFPDHNQSPRNT
Sbjct: 300 LQAAGIDPHANDGEVDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNT 359

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA+VAI 
Sbjct: 360 YQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAVVAIL 419

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R +T+ M+HG
Sbjct: 420 CYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDSTLRMKHG 479

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E G+
Sbjct: 480 TYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGI 539

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           +DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITP
Sbjct: 540 IDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITP 599

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 675
           DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ
Sbjct: 600 DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQ 656


>gi|300394726|gb|ADK11901.1| DNA-directed RNA polymerase II subunit two, partial [Pseudomerulius
           curtisii]
          Length = 652

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/652 (65%), Positives = 515/652 (78%), Gaps = 26/652 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSATP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
           IVE Q+L ++K+ I  L Q    EDG    W  LV  G +E +D EEEET MISMT +DL
Sbjct: 240 IVENQQLALQKKHIKWLSQGFRDEDGEEFKWEHLVKGGIVELLDAEEEETVMISMTPDDL 299

Query: 336 VQARLHPEE-------------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQS 376
             +RL  +                      A T+THCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 300 ENSRLQSQGIDPHANDGDYDPAARLKAGTNAHTWTHCEIHPSMILGICASIIPFPDHNQS 359

Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
           PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
           VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420 VAIFCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDMEKKSGVQQLEEFEKPTRDNTLR 479

Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 554
           M+HG+YDKL+DDGL  PG+ VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480 MKHGTYDKLEDDGLIAPGSGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
           E G+VDQVL++TN +G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540 ENGIVDQVLISTNFEGQKFVKVRVRSSRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 666
           GI PDI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S
Sbjct: 600 GIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVS 651


>gi|123481595|ref|XP_001323594.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
 gi|121906462|gb|EAY11371.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
          Length = 1177

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/846 (52%), Positives = 574/846 (67%), Gaps = 30/846 (3%)

Query: 1    MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
            +LPH+G  +   T KA++ GY+ H L+   LGRR +DDRDHY NKRLDLAGPL+G LF +
Sbjct: 346  LLPHLGEKESDTTSKAFFIGYMAHNLINVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFAL 405

Query: 61   LFRKLTRDVRAYVQKCVDNGK---------DVNLQFAIKAKTITSGLKYSLATGNWGQAN 111
            LF K+ + +  +++K + +G          D+  Q  +  K+ITSGL+YS+ TGNW    
Sbjct: 406  LFEKMIKSLTQHLEKRLKDGNIDQMAKSAADLTRQGVLNFKSITSGLEYSIGTGNWSVQR 465

Query: 112  AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 171
             AG++AGVSQ+LNRLT+ STLS+LRR N+PIGR+GKL  PR LHN+ WG +CP ETPEGQ
Sbjct: 466  QAGSKAGVSQMLNRLTFLSTLSNLRRTNTPIGRDGKLTGPRHLHNTHWGYICPVETPEGQ 525

Query: 172  ACGLVKNLALMVYITVG---SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 228
            +CGL+KNLALM  +TV     A   I   LE+ GT   ++I+P  I  +TKIF+NG W G
Sbjct: 526  SCGLIKNLALMSIVTVNRELEAGDAITRILEDTGTIPIQQITPDQIKDSTKIFLNGAWYG 585

Query: 229  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK 288
            IH D   L++TL   RR + + ++V  V  IR +E+ I+TD GR +RP+ IV    L +K
Sbjct: 586  IHTDAYDLMETLLSERRSLKIPSDVSFVHHIRDQEIFIWTDGGRITRPVLIVNDMHLTLK 645

Query: 289  KRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD 348
            K  +         E+  W  L  KG +EY+D +EEET +I+++  DL + R  P      
Sbjct: 646  KSVLYD-------ENTNWKVLRYKGMVEYLDIDEEETKLIALSPADLEENRNSP--TGVK 696

Query: 349  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 408
            TYTHCEIHPSLI GVC +IIPFPDHNQSPRNTYQ AMGKQA+G+Y TNY  RMD+ ++VL
Sbjct: 697  TYTHCEIHPSLIFGVCGTIIPFPDHNQSPRNTYQCAMGKQAIGLYTTNYMIRMDSSSHVL 756

Query: 409  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 468
            +YPQKPLV TR M +L+F +LPAGIN  VAI CY+GYNQEDS+++N S+IDRG FRS FF
Sbjct: 757  WYPQKPLVATRNMRYLNFNKLPAGINVTVAICCYTGYNQEDSLMLNASAIDRGLFRSYFF 816

Query: 469  RSYRDEEKKMGTL-VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 527
            R+Y++  +  GT    E F  PD     G++     K+D DGLA PG  VS +DVIIGK 
Sbjct: 817  RTYKETAEGDGTEGASEVFTFPDPQTVKGIKLHDSSKIDADGLAIPGAVVSAQDVIIGKI 876

Query: 528  TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 587
            +P S  E   +      +D S  +R  ETG+VD VL T     L+  +VR R +R P+IG
Sbjct: 877  SPDSPTELDHRQ----YKDTSCVVRPMETGVVDLVLRTITKKNLQLARVRTRQMRRPEIG 932

Query: 588  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA- 646
            DKF SRHGQKG  GMTY QEDMP+T +G+ PDII+NPHA+PSRMTIG LIEC++GK  A 
Sbjct: 933  DKFCSRHGQKGVCGMTYRQEDMPFTRDGMVPDIIMNPHALPSRMTIGHLIECLLGKCTAI 992

Query: 647  --HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 704
                  EGDATPF  VTVD I+K L   G++  G ET+YNG +G+RL A I+ GPTYYQR
Sbjct: 993  DPQNADEGDATPFCGVTVDAIAKRLQDAGFEKYGNETLYNGRSGKRLKAKIYFGPTYYQR 1052

Query: 705  LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 764
            LKHMV DK H+R  G   ++ RQP +GR+R+GGLRFGEMERDC+IAHG S  +++RL + 
Sbjct: 1053 LKHMVGDKAHARALGRKSLILRQPVDGRARNGGLRFGEMERDCLIAHGVSAMMRDRLLEN 1112

Query: 765  SDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPR 824
            SD Y V VC+ CGLIAI      + EC  C+++  + +V +PYA KL+ QELM+M IAPR
Sbjct: 1113 SDRYFVPVCKTCGLIAIEK-TDGTMECPACQDEGRLAKVEMPYAFKLVIQELMSMCIAPR 1171

Query: 825  MLTKED 830
            +   ED
Sbjct: 1172 LNLIED 1177


>gi|88601060|gb|ABD46526.1| RNA polymerase II second largest subunit, partial [Sistotrema
           coronilla]
          Length = 688

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/688 (62%), Positives = 525/688 (76%), Gaps = 36/688 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV+  K+ +L  A+K+ TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLASLFRMLFRKLTKDVYRHLQKCVETHKEFSLSLAVKSNTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WGM+C
Sbjct: 62  GNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGRDGKIAKPRQLHNTHWGMVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNL+LM  I+VGS + P++EFL+EWG E  EE + +    ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEWGLEGLEENANSH-GSATKVFVN 180

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G W+G+HRD   LVKTLRRLRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q
Sbjct: 181 GVWMGVHRDAPNLVKTLRRLRRKDDISPEVSVVRDIREKELRLYTDAGRXCRPLFIVENQ 240

Query: 284 RLLIKKRDIIALQQRES----PEDG-------GWHDLVAKGFIEYIDTEEEETTMISMTI 332
           +L +KK  I  L           DG        W  LV  G IE +D EEEET MI MT 
Sbjct: 241 QLAVKKAHIHKLNDHAPVTSIDPDGQAHSVPYSWSHLVRDGVIELLDAEEEETVMICMTP 300

Query: 333 NDLVQARLHPEEA---------------------YADTYTHCEIHPSLILGVCASIIPFP 371
            DL  +R     A                      A T+THCEIHPS+ILG+CASIIPFP
Sbjct: 301 XDLEASRTSQAAAGYVXNVGASDHDVAARVKSTMNAHTWTHCEIHPSMILGICASIIPFP 360

Query: 372 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 431
           DHNQSPRNTYQSAMGKQAMGIY+TN+Q RMDT+A +LYYPQKPL TTR+M +L FR+LPA
Sbjct: 361 DHNQSPRNTYQSAMGKQAMGIYLTNFQVRMDTMANILYYPQKPLATTRSMTYLRFRELPA 420

Query: 432 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 491
           G NA VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK+G L  E+F RP R
Sbjct: 421 GQNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYSDTEKKVGILPLEEFARPTR 480

Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 549
            +T+ ++HGSY+KLDDDGL  PGT V GED+IIGKT P+  D E  GQ  R +++RD S 
Sbjct: 481 DDTLRLKHGSYEKLDDDGLIAPGTGVVGEDIIIGKTAPLPPDSEELGQRLRTHSKRDVST 540

Query: 550 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 609
            L+ +E G+VDQV++TTN DGL+FVKVR+RS RIPQ+GDKF+SRHGQKGTVG+TY  EDM
Sbjct: 541 PLKSTENGIVDQVVVTTNGDGLKFVKVRIRSTRIPQVGDKFASRHGQKGTVGITYRHEDM 600

Query: 610 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           P++ EG+TPDII+NPHAIPSRMTIG LIEC++ K+A   G+EGDATPFT++TV+++S+ L
Sbjct: 601 PFSAEGVTPDIIINPHAIPSRMTIGHLIECLLSKLATLTGREGDATPFTELTVESVSQLL 660

Query: 670 HKCGYQMRGFETMYNGHTGRRLTAMIFL 697
            + GYQ RG E MY+GHTG++L   ++L
Sbjct: 661 REYGYQSRGLEVMYHGHTGKKLQVQVYL 688


>gi|55273991|gb|AAV48866.1| RNA polymerase II second largest subunit [Ampulloclitocybe
           clavipes]
          Length = 654

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/654 (65%), Positives = 519/654 (79%), Gaps = 25/654 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
           IV+ Q+L ++K+ I  L Q   ++ +D  W  LV  G IE +D EEEET MISMT  DL 
Sbjct: 240 IVDNQQLALQKKHIKWLNQGYNDTDQDFKWEQLVKGGIIELLDAEEEETVMISMTPEDLE 299

Query: 337 QARL-------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSP 377
            +RL       H  +             +A T+THCEIHPS+ILG+CASIIPFPDHNQSP
Sbjct: 300 NSRLQQSGVDPHANDGEFDPPARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSP 359

Query: 378 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 437
           RNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 360 RNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 419

Query: 438 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 497
           AI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M
Sbjct: 420 AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPVRDNTLRM 479

Query: 498 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 555
           +HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E
Sbjct: 480 KHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTE 539

Query: 556 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 615
           +G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 540 SGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 599

Query: 616 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           I PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+ V+++S  L
Sbjct: 600 IVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLRVESVSTFL 653


>gi|112382379|gb|ABI17421.1| RNA polymerase II second largest subunit, partial [Sarcomyxa
           serotina]
          Length = 659

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/660 (65%), Positives = 517/660 (78%), Gaps = 25/660 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLAXLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+H DP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHXDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+L ++K+ +  L +  R+  E+  W  LV  G IE +D EEEET MISMT  DL  +R
Sbjct: 240 NQQLALQKKHVKWLNEGSRDDGEEFKWEQLVKGGIIELLDAEEEETVMISMTPEDLENSR 299

Query: 340 LHPEEA-------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           L                         A T+THCEIHPS++LGVCASIIPFPDHNQSPRNT
Sbjct: 300 LQQSGVDTLTHDGXFDPAARLKAGVNAHTWTHCEIHPSMVLGVCASIIPFPDHNQSPRNT 359

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA+VAI 
Sbjct: 360 YQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAVVAIL 419

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG F S+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 420 CYSGYNQEDSVIMNQSSIDRGLFXSIYYRSYMDLEKKSGIQQLEEFEKPVRDNTLRMKHG 479

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 480 TYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 539

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 540 VDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVP 599

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 600 DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRG 659


>gi|123979368|gb|ABM81509.1| RNA polymerase II second largest subunit [Ramalina complanata]
          Length = 702

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/699 (61%), Positives = 527/699 (75%), Gaps = 46/699 (6%)

Query: 53  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 111
           LL GLFRMLF KLT+DV  Y+Q+CV+N K+ NL  A+K+ T+T+GLKYSLATGNWG Q  
Sbjct: 5   LLEGLFRMLFYKLTKDVYKYLQRCVENNKEFNLTLAVKSTTLTNGLKYSLATGNWGDQKK 64

Query: 112 AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 171
           AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQ
Sbjct: 65  AASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 124

Query: 172 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 231
           ACGLVKNLALM YITVG+   PI++F+ +   E  EE  P   P ATKIFVNG WVG+H 
Sbjct: 125 ACGLVKNLALMCYITVGTPGQPIVDFMMQRQMELLEEYEPLSNPNATKIFVNGVWVGVHS 184

Query: 232 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------R 284
            P +L  T+  LRR+  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          
Sbjct: 185 QPAILTATVMSLRRKGLISYEVSLVRDIRDREFKIFTDAGRVCRPLFVVESNPRDQNFGN 244

Query: 285 LLIKKRDIIAL------------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTI 332
           L++ K D+  L            Q RE  +  GW  LV  G +EY+D EEEET MI MT 
Sbjct: 245 LVLTKHDVQELDHNRELISSMDAQDRED-QAIGWQGLVKNGKVEYVDAEEEETIMIVMTP 303

Query: 333 NDLVQARLHPE-----------------------EAYADTYTHCEIHPSLILGVCASIIP 369
            DL  ++ +                         +A    +THCEIHPS+ILG+CASIIP
Sbjct: 304 EDLEISKHYSTYGDDALAGDDNKDDPNKRMKVRPKAIRQAWTHCEIHPSMILGICASIIP 363

Query: 370 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 429
           FPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 364 FPDHNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLKFREL 423

Query: 430 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 489
           PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P
Sbjct: 424 PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEQFEKP 483

Query: 490 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 547
            RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD 
Sbjct: 484 MRSDTLSLKHGTYDKLDDDGIVSPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDT 543

Query: 548 SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 607
           S  LR +E G+VDQVLL+TN+DGLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QE
Sbjct: 544 STPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQE 603

Query: 608 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 667
           DMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++S+
Sbjct: 604 DMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSR 663

Query: 668 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
            L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+
Sbjct: 664 LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 702


>gi|108885433|gb|ABG23223.1| RNA polymerase II second largest subunit, partial [Cintractia
           axicola]
          Length = 692

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/693 (61%), Positives = 536/693 (77%), Gaps = 27/693 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KR+DLAGPL+  LFRMLFRK+TRDV  ++QKCV+  K+ ++Q A+K+ TIT+GL+YSL
Sbjct: 1   GKKRIDLAGPLMANLFRMLFRKVTRDVYRHLQKCVEEHKEFHIQAAVKSATITNGLRYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  A   +AGVSQVLNR  + STLSHLRR N+PIGR+GK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKAMQAKAGVSQVLNRFAFTSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  +TVG+ + PI+EFLEE+G ++  ++      +ATK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFLEEFGLDSLVDMQ-VTNAKATKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G H DP  LV TLR LRR+ D++ EV VVRDIR KELRIYTD  R +RPLFIV 
Sbjct: 180 VNGVWMGTHDDPGQLVDTLRDLRRKDDISQEVSVVRDIREKELRIYTDSSRVTRPLFIVN 239

Query: 282 KQ--RLLIKKRDIIAL-QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
                LLIKK  +  + Q  ES E+  W  LV +G IE++D EEEE+ +I M+  DL Q+
Sbjct: 240 PHDMTLLIKKHHVQMIGQTTESGEEFRWTQLVQQGVIEFLDAEEEESVLICMSTTDLEQS 299

Query: 339 R--------LHPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 378
           R        ++ E A              DT+THCE+HP+++LG+CASIIPFPDHNQSPR
Sbjct: 300 REYKIRNGHVNFESADPSARLKSALTIMPDTWTHCELHPAMVLGICASIIPFPDHNQSPR 359

Query: 379 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 438
           N Y+SAM KQ++ I ++N+  R DT+ +VL+YPQKPL TTR+MEHL FR+LPAG NAIVA
Sbjct: 360 NVYESAMAKQSVSINISNFHTRHDTMNHVLHYPQKPLGTTRSMEHLKFRELPAGQNAIVA 419

Query: 439 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 498
           I CYSGYNQEDSVIMNQSSIDRG FRSL++R Y  EEKK+G +  E+F +P+R  T+ M+
Sbjct: 420 IMCYSGYNQEDSVIMNQSSIDRGLFRSLYYRGYLAEEKKVGVMQLEEFEKPNRDITIRMK 479

Query: 499 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSET 556
           HG+YDKLD DGL  PGTRVSG+DVIIGKT P+  D E  G  ++ +T++D SI+L+ +E 
Sbjct: 480 HGTYDKLDADGLCAPGTRVSGDDVIIGKTAPLPPDSEELGMRTKMHTKKDASIALKSTEN 539

Query: 557 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 616
           G++DQVLLTTNA G +FVKVRVR+ RIPQ GDKF+SRHGQKGTVG+TY QEDMP++ EG+
Sbjct: 540 GIIDQVLLTTNAAGNKFVKVRVRNSRIPQTGDKFASRHGQKGTVGITYRQEDMPFSAEGL 599

Query: 617 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 676
           TPDII+NPHAIPSRMTIG L+EC++ KVAA  G+EGDATPFT++TV+ +S  L   GYQ 
Sbjct: 600 TPDIIINPHAIPSRMTIGHLVECLLSKVAALSGQEGDATPFTELTVEAVSSILRGLGYQS 659

Query: 677 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 709
           RG E MYNGHTGR++ A ++LGPTYYQRLKHMV
Sbjct: 660 RGLEVMYNGHTGRKMQAQVYLGPTYYQRLKHMV 692


>gi|103001472|gb|ABF71509.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 686

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/686 (62%), Positives = 524/686 (76%), Gaps = 40/686 (5%)

Query: 59  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 117
           RMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q  AA ++A
Sbjct: 1   RMLFXKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKA 60

Query: 118 GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 177
           GVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVK
Sbjct: 61  GVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 120

Query: 178 NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 237
           NLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRDP  LV
Sbjct: 121 NLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVHRDPAHLV 180

Query: 238 KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKR 290
            T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          L++ K 
Sbjct: 181 STVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNCGNLVLTKE 240

Query: 291 DIIALQQ-RESP-----EDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            I  L+  ++ P     ED      GW  LV  G +EY+D EEEET MI MT  DL  +R
Sbjct: 241 HINKLEDDKDLPANMDSEDKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMTPEDLEISR 300

Query: 340 L-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
                                P    A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 301 QIQAGYAMPETSDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 360

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIA
Sbjct: 361 YQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIA 420

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS+T+ ++HG
Sbjct: 421 CYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRSDTLKLKHG 480

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR +E G+
Sbjct: 481 TYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGI 540

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 541 VDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVP 600

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           D+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L + GYQ RG
Sbjct: 601 DLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLREHGYQSRG 660

Query: 679 FETMYNGHTGRRLTAMIFLGPTYYQR 704
           FE MYNGHTG++L A +FLGPTYYQR
Sbjct: 661 FEVMYNGHTGQKLVAQVFLGPTYYQR 686


>gi|300394744|gb|ADK11910.1| DNA-directed RNA polymerase II subunit two, partial [Pterula echo]
          Length = 682

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/683 (62%), Positives = 521/683 (76%), Gaps = 41/683 (6%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLF+KLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1   DHFGKKRLDLAGPLLSNLFRMLFKKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q     ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHNS 
Sbjct: 61  YSLATGNWGDQKKMMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNSH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNLALM  I+VGS + P+L+FLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLALMSCISVGSFSGPVLDFLEEWGLESLEENAHSTTPY-T 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+F+NG W+G+HRD   LVKT+++LRRR D+++EV +VRDIR KELRIYTD GR  RPL 
Sbjct: 180 KVFLNGVWIGVHRDSANLVKTIKKLRRRDDISSEVSIVRDIREKELRIYTDAGRVCRPLL 239

Query: 279 IVEKQRLLIKKRDIIALQQRESP--EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
           IVE Q+L++ K  I  L  +++P      W D++  G IE +D EEEET MI M+  DL 
Sbjct: 240 IVENQQLMLTKEHIEWLTNKQTPLGRPFFWEDMMKHGLIELLDAEEEETVMICMSPEDLE 299

Query: 337 QARLHPEE-----------------------------------AYADTYTHCEIHPSLIL 361
           ++R                                        A   T+THCEIHPS+IL
Sbjct: 300 ESRTKNSRGAIQEAKEEEEGMTEEEKKKKKEEDFDPAARLKAAANQSTWTHCEIHPSMIL 359

Query: 362 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 421
           G+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+M
Sbjct: 360 GICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFLIRMDTMANILYYPQKPLATTRSM 419

Query: 422 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 481
           E+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSL++RSY D EKK G  
Sbjct: 420 EYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRSYMDLEKKSGVQ 479

Query: 482 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 540
             E+F +P R NT+ M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +
Sbjct: 480 QLEEFEKPSRENTLRMKHGTYDKLEDDGLIAPGTNVLGEDIIIGKTAPIPPDSEELGQRT 539

Query: 541 R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 599
           R +TRRD S  L+ +E G+VDQVL+TTN++G +FVKVRVRS R+PQIGDKF+SRHGQKGT
Sbjct: 540 RSHTRRDVSTPLKSTEKGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGT 599

Query: 600 VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 659
           +G+TY QEDMP+T +GI PDII+NPHAIPSRMTIG L+EC++ KVA  +G+EGDATPF+D
Sbjct: 600 IGITYRQEDMPFTADGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGQEGDATPFSD 659

Query: 660 VTVDNISKALHKCGYQMRGFETM 682
           +TV+ +SK L++ G+Q RG E M
Sbjct: 660 LTVEEVSKTLYERGFQSRGLEVM 682


>gi|52699822|gb|AAU86973.1| DNA-dependent RNA polymerase II second largest subunit [Peltula
           umbilicata]
          Length = 704

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/703 (61%), Positives = 525/703 (74%), Gaps = 39/703 (5%)

Query: 49  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 108
           LAGPLL  LFR LF KLTRD+  Y+QKCV++ ++ NL   +K  TIT+GLKYSLATGNWG
Sbjct: 1   LAGPLLANLFRGLFAKLTRDIYKYLQKCVESNREFNLNIGVKQATITNGLKYSLATGNWG 60

Query: 109 -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 167
            Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 61  DQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 120

Query: 168 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 227
           PEGQACGLVKNLALM YITVGS + PI++++     E  EE  P   P ATK+F+NG WV
Sbjct: 121 PEGQACGLVKNLALMCYITVGSESLPIIQYMTSRNMEMLEEYEPQRSPNATKVFLNGVWV 180

Query: 228 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 283
           G+H DP  LV+++  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF++E +    
Sbjct: 181 GVHDDPAHLVQSVLALRRECVMSYEVSLVRDIRDREFKIFTDAGRVCRPLFVIENRTGHP 240

Query: 284 ------------RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 331
                       R L KK+D  +  Q E  +D GW  LV+ G +EY+D EEEET MI MT
Sbjct: 241 NHGALVLKKSHLRELEKKKDTPSTDQSEE-KDNGWQFLVSSGVVEYVDAEEEETLMIVMT 299

Query: 332 INDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPD 372
             +L  +R                     P      ++THCEIHPS+ILG+CASIIPFPD
Sbjct: 300 PEELEASRQIRAGYEVKEPEYDPNRRLKAPLNPTLRSWTHCEIHPSMILGICASIIPFPD 359

Query: 373 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 432
           HNQSPRNTYQSAMG QAMG        RMDT++ +LYYPQKPL TTR+ME L FR+LPAG
Sbjct: 360 HNQSPRNTYQSAMGXQAMGXXXXXXXXRMDTMSNILYYPQKPLATTRSMEFLKFRELPAG 419

Query: 433 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 492
            NAIVAIA YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+ G  V E F +P RS
Sbjct: 420 QNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRAGMQVVEQFEKPMRS 479

Query: 493 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSIS 550
           +T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ ++Y  +RD S  
Sbjct: 480 DTVRLKHGTYDKLDEDGIINPGVRVSGEDIIIGKTAPIAPDAEELGQRTKYHNKRDVSTP 539

Query: 551 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 610
           LR +E+G+VDQVL+TTNA+GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 540 LRSTESGIVDQVLVTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQEDMP 599

Query: 611 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 670
           +T EGI PD+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD++S  L 
Sbjct: 600 FTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSALKGFEGDATPFTDVTVDSVSALLR 659

Query: 671 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           + GYQ RG E MYNGHTGR+L A IFLGPTYYQRL+HMVD KI
Sbjct: 660 EHGYQSRGXEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDXKI 702


>gi|357216657|gb|AET71062.1| RNA polymerase II second largest subunit, partial [Coriolopsis cf.
           byrsina FP105050sp]
          Length = 659

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/660 (65%), Positives = 518/660 (78%), Gaps = 25/660 (3%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ N+  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNISLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q      +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKTMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VG+ + P++EFLEEWG E+ EE + A  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LV TLR+LRR+ D+N EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPVKLVSTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIAL--QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 339
            Q+LLI+K+ I +L   + +S     W  L+  G IE +D EEEET +I MT  DL  +R
Sbjct: 240 NQQLLIQKKHIESLVRAKDDSTHVYNWDSLLKDGVIELLDAEEEETVIICMTPEDLENSR 299

Query: 340 L-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 380
           L       H ++   D            ++THCEIHPS+ILGVCASIIPFPDHNQSPRNT
Sbjct: 300 LQSAGIDPHADDENDDPSARLKAATSAHSWTHCEIHPSMILGVCASIIPFPDHNQSPRNT 359

Query: 381 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 440
           YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 360 YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAIL 419

Query: 441 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 500
           CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG
Sbjct: 420 CYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHG 479

Query: 501 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 558
           +YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 480 TYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEQGI 539

Query: 559 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 618
           VDQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITP
Sbjct: 540 VDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITP 599

Query: 619 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 678
           DII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFTD+TV+++S+ L + GYQ RG
Sbjct: 600 DIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRG 659


>gi|357216641|gb|AET71054.1| RNA polymerase II second largest subunit, partial [Trametes aff.
           maxima FPRI101]
          Length = 663

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/664 (64%), Positives = 521/664 (78%), Gaps = 30/664 (4%)

Query: 43  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 102
           G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSL
Sbjct: 1   GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSL 60

Query: 103 ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 161
           ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61  ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 221
           +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121 VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 222 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 281
           VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 282 KQRLLIKKRDIIALQQ------RESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTIND 334
            Q+LL++K+ I +L +       + PE    W +L+  G IE +D EEEET MI MT  D
Sbjct: 240 NQQLLLQKKHIESLVRGKEDAAHQGPEFAYKWDNLIKDGVIELLDAEEEETVMICMTPED 299

Query: 335 LVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL       H  +   D            T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 300 LENSRLQAAGIDPHANDGEVDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           +VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420 VVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ 
Sbjct: 480 RMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540 TEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + G
Sbjct: 600 EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKG 659

Query: 674 YQMR 677
           YQ R
Sbjct: 660 YQSR 663


>gi|89090014|gb|ABD46533.2| RNA polymerase II second largest subunit [Dacrymyces sp. FPL8953]
          Length = 676

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/677 (63%), Positives = 525/677 (77%), Gaps = 27/677 (3%)

Query: 59  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 117
           RMLFR+LT+DV  Y+QKCV+  ++ N+  A+K  TIT+GLKYSLATGNWG Q      +A
Sbjct: 1   RMLFRRLTKDVYRYMQKCVETHREFNINAAVKPATITNGLKYSLATGNWGDQKKFMQAKA 60

Query: 118 GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 177
           GVSQVLNR T+ASTLSHLRR N+PIGR+GK+A+PRQLHN+ WGM+CPAETPEGQACGLVK
Sbjct: 61  GVSQVLNRYTFASTLSHLRRTNTPIGRDGKIARPRQLHNTHWGMVCPAETPEGQACGLVK 120

Query: 178 NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 237
           NLALM  I+VG+ + P++EFLEEWG E   E +   +  ATK+FVNG W+GIHRDP+ LV
Sbjct: 121 NLALMACISVGTLSQPVVEFLEEWGLEPLGERTDEPL-TATKVFVNGVWMGIHRDPQHLV 179

Query: 238 KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV--EKQRLLIKKRDIIAL 295
            T+R LRR   +++E+ VVRDIR +ELR+YTD GR  RPLFIV  + Q L+I KR+I  L
Sbjct: 180 NTVRTLRRSDGISSEISVVRDIRERELRLYTDAGRVCRPLFIVNEQTQNLVISKREINWL 239

Query: 296 QQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---------HP 342
             RE P +     GW  LV  G +E +D EEEET MI+MT  DL Q++          +P
Sbjct: 240 HAREKPGEKDKVYGWSQLVTSGMVELLDAEEEETVMIAMTPQDLDQSKTKRGTGYVSNNP 299

Query: 343 EEA--------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 394
           E A        + + ++HCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+
Sbjct: 300 ENAAVRIKSTVHHEHWSHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYL 359

Query: 395 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 454
           TN+Q RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMN
Sbjct: 360 TNFQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMN 419

Query: 455 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 514
           QSSIDRG FRS+++RSY D EK  G +  E+F +P R  T+ M+HG+YDKL+ DGL  PG
Sbjct: 420 QSSIDRGLFRSIYYRSYTDMEKTTGIVPVEEFEKPHRDTTVRMKHGTYDKLEADGLVAPG 479

Query: 515 TRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLR 572
             ++GED+IIGKT P+  D E  GQ +R +TRRD S  L+ +E G+VDQVL++TN  G++
Sbjct: 480 IGINGEDIIIGKTAPLPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLISTNESGVK 539

Query: 573 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
           FVKVR+RS RIPQIGDKF+SRHGQKGT+GMTY QEDMP+   GITPDII+NPHAIPSRMT
Sbjct: 540 FVKVRIRSTRIPQIGDKFASRHGQKGTIGMTYRQEDMPFAGNGITPDIIINPHAIPSRMT 599

Query: 633 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 692
           IG L+EC++ K+A  +G EGDATPFTD+TV+++S  L   GYQ RG E MY+GHTGR+L 
Sbjct: 600 IGHLVECLLSKLATLIGNEGDATPFTDLTVESVSSLLRGKGYQQRGLEVMYHGHTGRKLQ 659

Query: 693 AMIFLGPTYYQRLKHMV 709
           A ++LGPTYYQRLKHMV
Sbjct: 660 AQVYLGPTYYQRLKHMV 676


>gi|52699872|gb|AAU86997.1| DNA-dependent RNA polymerase II second largest subunit [Sarcogyne
           similis]
          Length = 704

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/703 (61%), Positives = 523/703 (74%), Gaps = 40/703 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           K LDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 2   KXLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++E  
Sbjct: 182 GVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIEND 241

Query: 284 -------RLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEET 325
                   L++ K  I  L+  +       PE+      GW  LV  G +EY+D EEEET
Sbjct: 242 PKDPNCGNLVLTKEHINMLENDKDLPADMDPEEKEKKFFGWDGLVNNGVVEYVDAEEEET 301

Query: 326 TMISMT-------------------INDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 366
            MI MT                    +DL++    P    A T+THCEIHPS+ILG+CAS
Sbjct: 302 VMIVMTPEDLEISRQLQAGYAMPEASDDLIKRVKAPMNPTAHTWTHCEIHPSMILGICAS 361

Query: 367 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 426
           IIPFPDHNQSPRNTYQSAMG QAMG               +LYYPQKPL TTR+ME L F
Sbjct: 362 IIPFPDHNQSPRNTYQSAMGXQAMGXXXXXXXXXXXXXXXILYYPQKPLATTRSMEFLKF 421

Query: 427 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 486
           R+LPAG NAIVAIA YSGYNQEDSVIMN SSIDRG FRSLF+RSY D+EK++G  V E F
Sbjct: 422 RELPAGQNAIVAIAXYSGYNQEDSVIMNXSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 481

Query: 487 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 544
            +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED++IGKT PI+ D E  GQ ++ + +
Sbjct: 482 EKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIVIGKTAPIAPDAEELGQRTKLHVK 541

Query: 545 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 604
           RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 542 RDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 601

Query: 605 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 664
            QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+
Sbjct: 602 RQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDS 661

Query: 665 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
           +SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 662 VSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 704


>gi|103001354|gb|ABF71503.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 687

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/687 (62%), Positives = 523/687 (76%), Gaps = 40/687 (5%)

Query: 54  LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANA 112
           L  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYSLATGNWG Q  A
Sbjct: 1   LANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKA 60

Query: 113 AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 172
           A ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 61  ASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 120

Query: 173 CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 232
           CGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HRD
Sbjct: 121 CGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVHRD 180

Query: 233 PEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RL 285
           P  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          L
Sbjct: 181 PAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNCGNL 240

Query: 286 LIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTIND 334
           ++ K         +D+ A+   E  E    GW  LV  G +EY+D EEEET MI MT  D
Sbjct: 241 VLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMTPED 300

Query: 335 LVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +R                     P    A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 301 LEISRQIQAGYAMPETSDDPNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPDHNQ 360

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NA
Sbjct: 361 SPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNA 420

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS+T+
Sbjct: 421 IVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRSDTL 480

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR 
Sbjct: 481 KLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPLRS 540

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T+
Sbjct: 541 TENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTM 600

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 673
           EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L + G
Sbjct: 601 EGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLREHG 660

Query: 674 YQMRGFETMYNGHTGRRLTAMIFLGPT 700
           YQ RGFE MYNGHTGR+L A +FLGPT
Sbjct: 661 YQSRGFEVMYNGHTGRKLVAQVFLGPT 687


>gi|45120574|gb|AAO64669.2| RNA polymerase II subunit RPB2, partial [Phlebia radiata]
          Length = 674

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/677 (63%), Positives = 528/677 (77%), Gaps = 22/677 (3%)

Query: 40  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 99
           DH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K  TI++GLK
Sbjct: 1   DHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHNTISNGLK 60

Query: 100 YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 158
           YSLATGNWG Q      +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61  YSLATGNWGDQKKMMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 218
           WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121 WGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
           K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
           IVE Q+L I K+ I  L  + S  +  W DL+  G ++ +B  EEE  MISMT  DL  +
Sbjct: 240 IVENQQLAITKKHINQLNDKTS--EYKWDDLIKGGVVKLLBAXEEEPVMISMTPEDLENS 297

Query: 339 R--LHPEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 382
           R  L P +                A T+THCEIHPS++LGVCASIIPFPDH QSPRNTYQ
Sbjct: 298 RTGLDPAQNDGEFDPSARLKAPTTAHTWTHCEIHPSMVLGVCASIIPFPDHTQSPRNTYQ 357

Query: 383 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 442
           SAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 358 SAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 417

Query: 443 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 502
           SGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+Y
Sbjct: 418 SGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGTY 477

Query: 503 DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 560
           DKL+DDGL  PGT V+GED+IIGK  PI  D E  GQ +R +T+RD S  L+ +E+G++D
Sbjct: 478 DKLEDDGLIAPGTGVNGEDIIIGKXXPIPPDSEELGQRTRSHTKRDVSTPLKSTESGIID 537

Query: 561 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 620
           QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI
Sbjct: 538 QVLITTNQEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGITPDI 597

Query: 621 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 680
           ++NPHAIPSRMTIG L+EC++ KVA  +G EGD TPF ++TV+++S+ L + GY  RG E
Sbjct: 598 VINPHAIPSRMTIGHLVECLLSKVATLIGNEGDVTPFIELTVESVSQFLRQEGYHSRGLE 657

Query: 681 TMYNGHTGRRLTAMIFL 697
            MY+GHTGR+L A ++L
Sbjct: 658 IMYHGHTGRKLQAQVYL 674


>gi|123979420|gb|ABM81535.1| RNA polymerase II second largest subunit [Dirinaria applanata]
          Length = 705

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/704 (61%), Positives = 533/704 (75%), Gaps = 42/704 (5%)

Query: 45  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 104
           KRLDLAGPLL GLFR LF KL +DV  Y++ C++N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 2   KRLDLAGPLLAGLFRTLFNKLNKDVEKYLKNCIENNREFNLTLGVKSTTITNGLKYSLAT 61

Query: 105 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 163
           GNWG Q  A+ ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62  GNWGEQKKASSSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 164 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 223
           PAETPEGQACGLVKNLALM Y++VG+ +  I++FL     E  EE  P   P ATKIFVN
Sbjct: 122 PAETPEGQACGLVKNLALMCYVSVGTPSEGIVDFLLSRQMEPLEEYDPLASPHATKIFVN 181

Query: 224 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 283
           G WVGIH+ P +LV  ++ LRR+  +  EV ++RDIR +E +I TD GR  RPLF+VE  
Sbjct: 182 GVWVGIHQKPALLVSAVQSLRRKHFIEHEVSLIRDIRDREFKILTDQGRVLRPLFVVEDD 241

Query: 284 -------RLLIKKRDIIALQ-QRESPEDG----------GWHDLVAKGFIEYIDTEEEET 325
                   L++ K  +  L+  R+ P D           GWH L+ +G +EY+D EEEET
Sbjct: 242 PKMHDHGNLVLTKDHVERLEADRDVPLDMDKEERERITFGWHGLINEGVVEYVDAEEEET 301

Query: 326 TMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHPSLILGVCA 365
            MI MT  DL     +QA     EA +D               T+THCEIHPS+ILG+CA
Sbjct: 302 IMIVMTPYDLNVSRQIQAGYVLPEADSDDPNRRVKAPINPTAHTWTHCEIHPSMILGICA 361

Query: 366 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 425
           SIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T++++LYYPQKPL TTR+ME L 
Sbjct: 362 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMSHILYYPQKPLATTRSMEFLK 421

Query: 426 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 485
           FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRS F+RSY D+EKK+G    E 
Sbjct: 422 FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSPFYRSYTDQEKKIGMYTMEQ 481

Query: 486 FGRPDRSNTMGMRHGSYDKLDD-DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 542
           F +P R++T+ ++HG+YDKLDD DG+  PG RVSGED+IIGKT PI+ D E  GQ ++ +
Sbjct: 482 FEKPARTDTLKLKHGTYDKLDDTDGIIIPGARVSGEDIIIGKTAPIAPDAEELGQRTKLH 541

Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
            +RD S  LR +E+G+VDQVLLT N++GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 542 NKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 601

Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 662
           TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 602 TYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 661

Query: 663 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
           D++S  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+
Sbjct: 662 DSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 705


>gi|320172596|gb|ADW24181.1| RNA polymerase II second largest subunit [Neolentinus lepideus]
          Length = 655

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/656 (65%), Positives = 518/656 (78%), Gaps = 27/656 (4%)

Query: 39  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGL 98
           R H+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GL
Sbjct: 2   RGHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGL 61

Query: 99  KYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS 157
           KYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+
Sbjct: 62  KYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNT 121

Query: 158 QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 217
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  
Sbjct: 122 HWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-C 180

Query: 218 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 277
           TK+FVNG W+G+HRDP  LV+T+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPL
Sbjct: 181 TKVFVNGVWMGVHRDPANLVRTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPL 240

Query: 278 FIVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTIND 334
           FIVE Q+L ++K+ +  L Q  S +DG    W  LV  G +E +D EEEET MISMT  D
Sbjct: 241 FIVENQQLALQKKHVRWLNQGYS-DDGEPWKWDQLVKNGIVELLDAEEEETVMISMTPED 299

Query: 335 LVQARLH-----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQ 375
           L  +RL      P +               +  T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 300 LENSRLQSAGIDPHQNDGEFDPSARLKAATHGHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 376 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 435
           SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNA 419

Query: 436 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 495
           IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420 IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTL 479

Query: 496 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 553
            M+HG+YDKL+DDGL  PGT V+G+D+IIGKT PI  D E  GQ +R +TRRD S +L+ 
Sbjct: 480 RMKHGTYDKLEDDGLIAPGTGVTGDDIIIGKTAPIPPDSEELGQRTRSHTRRDVSTALKS 539

Query: 554 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 613
           +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540 TEQGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 614 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 669
           EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L
Sbjct: 600 EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFL 655


>gi|110669588|gb|ABG81889.1| RNA polymerase II second largest subunit [Anisomeridium polypori]
          Length = 719

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/719 (59%), Positives = 528/719 (73%), Gaps = 42/719 (5%)

Query: 37  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
           DDRDH+G KRLDLAGPL+  LFR+LF K+T+D   Y+QKCV+N +D N+Q A+KA  +T+
Sbjct: 1   DDRDHFGKKRLDLAGPLIANLFRILFLKMTKDAYKYLQKCVENNQDFNVQIAVKASVVTN 60

Query: 97  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
           GLKYSLATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLH
Sbjct: 61  GLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLH 120

Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 215
           N+ WG++CPAETPEGQACGLVKNL+LM Y++ GS + PI EF+ +   +  EE  P V P
Sbjct: 121 NTHWGLVCPAETPEGQACGLVKNLSLMCYVSTGSESTPITEFMLQRNMDLLEEYDPVVNP 180

Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
            ATK+FVNG WVG+H     LV  +  LRR   ++ E+ ++RDIR +E +I+TD GR  R
Sbjct: 181 TATKVFVNGVWVGVHSQASQLVSVVNELRRSGTLSFEMSLIRDIRDREFKIFTDAGRVMR 240

Query: 276 PLFIVEK-----------------QRLLIKKRDII--ALQQRESPEDGGWHDLVAKGFIE 316
           PLF+VE                  Q+L+  +R I+  ++ +       G       G IE
Sbjct: 241 PLFVVETDYRKPNRGSLVLTKSHVQKLIEDRRLILRGSMTRTRLIXSLGGEGSFESGVIE 300

Query: 317 YIDTEEEETTMISMTINDL------VQARLHPEEAYAD--------------TYTHCEIH 356
           Y+D EEEET MI MT  DL      +Q    PE   AD              TYTHCEIH
Sbjct: 301 YLDAEEEETAMIIMTPEDLDEHRDLMQGIPVPEGMAADRHKRIKPKPNPTVKTYTHCEIH 360

Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
           PS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL 
Sbjct: 361 PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFERRMETMANILYYPQKPLA 420

Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
            T AME+L FR LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y+++E+
Sbjct: 421 RTMAMEYLKFRGLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQEQER 480

Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EA 535
            +G  V E   RP RS TM M+ GSY+KLD DG+  PG RV GED+I+GKTTP++ D E 
Sbjct: 481 MVGNGVFEASERPVRSETMRMKQGSYEKLDQDGIITPGQRVVGEDIIMGKTTPMAHDVEE 540

Query: 536 QGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 594
            GQ  + +T+RD S+ LR +E G++DQV+LTT ADG RF KVRVR+ ++PQIGDKF+SRH
Sbjct: 541 LGQRQKAHTKRDVSVPLRSTEAGVIDQVMLTTTADGNRFAKVRVRTTKVPQIGDKFASRH 600

Query: 595 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 654
           GQKGT+G+TY  EDMP++ +GI PDII+NPHAIPSRMTI  L+EC + KVA   G EGDA
Sbjct: 601 GQKGTIGVTYRNEDMPFSRDGIVPDIIINPHAIPSRMTIAHLVECQLSKVATLRGDEGDA 660

Query: 655 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 713
           TPFT VTV  ISK L   GYQ RGFE MYNG+TGR+L + +F GPTYYQRL+HMVDDKI
Sbjct: 661 TPFTKVTVTQISKILRDQGYQSRGFEVMYNGYTGRKLVSQVFFGPTYYQRLRHMVDDKI 719


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,268,604,550
Number of Sequences: 23463169
Number of extensions: 574116541
Number of successful extensions: 1186749
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 17069
Number of HSP's successfully gapped in prelim test: 3053
Number of HSP's that attempted gapping in prelim test: 1105567
Number of HSP's gapped (non-prelim): 40876
length of query: 842
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 691
effective length of database: 8,816,256,848
effective search space: 6092033481968
effective search space used: 6092033481968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 82 (36.2 bits)