BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003180
(842 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 1681 bits (4352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 810/842 (96%), Positives = 830/842 (98%), Gaps = 1/842 (0%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 351 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
LFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 411 LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470
Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 471 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530
Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDP+MLV+TL
Sbjct: 531 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTL 590
Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKK+DI LQQRES
Sbjct: 591 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRES 650
Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
P++GGWHDLVAKG+IEYIDTEEEETTMISMTINDLVQARL+P +AY+DTYTHCEIHPSLI
Sbjct: 651 PDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLI 710
Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 711 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 770
Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 771 MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 830
Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
LVKEDFGRPDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+AQGQAS
Sbjct: 831 LVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 890
Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
RYTR+DHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 891 RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950
Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 951 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1010
Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
TVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1011 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1070
Query: 721 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1071 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1130
Query: 781 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 840
IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK D K +KD KKK
Sbjct: 1131 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-DVKLAKDQKKK 1189
Query: 841 GA 842
GA
Sbjct: 1190 GA 1191
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 1659 bits (4297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 793/828 (95%), Positives = 812/828 (98%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG G+ CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 352 MLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 411
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
LFRKLTRDVR+YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
Sbjct: 412 LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 471
Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA
Sbjct: 472 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531
Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
LMVYITVGSAAYPILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTL
Sbjct: 532 LMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTL 591
Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKKRDI ALQQRES
Sbjct: 592 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRES 651
Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
E+ GWH LVAKGFIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLI
Sbjct: 652 AEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLI 711
Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA
Sbjct: 712 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771
Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 480
MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 772 MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 831
Query: 481 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 540
LVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+S
Sbjct: 832 LVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSS 891
Query: 541 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 600
RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 892 RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 951
Query: 601 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 660
GMTYTQEDMPWT+EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 952 GMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1011
Query: 661 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 720
TVDNISKALHKCGYQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1012 TVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1071
Query: 721 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 780
VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIA
Sbjct: 1072 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIA 1131
Query: 781 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
IANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1132 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 1261 bits (3262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/831 (71%), Positives = 700/831 (84%), Gaps = 9/831 (1%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHV +F ETKKA+YFGYI HRLLL +L RR DDRDH+ NKRLDLAGPLLG LFR
Sbjct: 345 MLPHVSVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQ 404
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
LF+KLT+DVR Y+Q+C+D K+ A+K+KTITSGLKYSLATGNWG + + GT++GV+
Sbjct: 405 LFKKLTKDVRLYLQRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVA 464
Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
QVLNRLT+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA
Sbjct: 465 QVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLA 524
Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISP-AVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+M YI+VGSA+ PILEFLEEW TEN EEIS + I ATKIFVNG WVGIH P+ L+ T
Sbjct: 525 MMSYISVGSASQPILEFLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLST 584
Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
LR LRR DV+ EV VVRDIR KELR+YTD GRC RPLF+V+ ++ IKK+ I L +
Sbjct: 585 LRLLRRCGDVSVEVSVVRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINND 644
Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
+ W DL+++G +EYID EEEET +I+MT DLV P E TYTHCEIHPS+
Sbjct: 645 ---EYKWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPM---PNEQIVHTYTHCEIHPSM 698
Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
ILG+C SIIPFPDHNQSPRNTYQ+AMGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR
Sbjct: 699 ILGICCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTR 758
Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
+ME+LHFR+LPAG N VAIACYSGYNQEDSVI+NQS+IDRG FRS+F+R+Y+DE+KK
Sbjct: 759 SMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQT 818
Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQG 537
+L++E F +P+R GMRHGSY+K+DDDGL PG RV+G+D+IIGKTTP+ S D+
Sbjct: 819 SLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGP 878
Query: 538 QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 597
+ R+T+RD S +LR SETG+VDQV+LTT+ +G +F KVRVRS+R+PQIGDKFSSRHGQK
Sbjct: 879 KTRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQK 938
Query: 598 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 657
GT GM Y QED+P+TVEGI PDIIVNPHAIPSRMTIGQLIEC++GKV+A G EGDATPF
Sbjct: 939 GTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPF 998
Query: 658 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 717
TDVTV+ IS+ALHK GYQM G E MYNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR
Sbjct: 999 TDVTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRS 1058
Query: 718 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERLFDQSD+YRVH+C+ CG
Sbjct: 1059 RGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICG 1118
Query: 778 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
LIAIANLKKNSFECR CKNKT I Q+ +PYA KLLFQELM+M+IAPRM T+
Sbjct: 1119 LIAIANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSIAPRMFTQ 1169
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
PE=1 SV=1
Length = 1174
Score = 1235 bits (3195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586
Query: 240 LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
LR+LRR++D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646
Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +EYIDT EEET M++MT +DL + E AY TYTHCEIHPS
Sbjct: 647 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 702 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
PE=2 SV=2
Length = 1174
Score = 1233 bits (3191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/832 (70%), Positives = 684/832 (82%), Gaps = 10/832 (1%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
+F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGV
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGV 466
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 467 SQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNL 526
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ T
Sbjct: 527 ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586
Query: 240 LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
LR+LRR++D+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++R
Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKER 646
Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
E + W DLVA G +EYIDT EEET M++MT +DL + E AY TYTHCEIHPS
Sbjct: 647 EY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPS 701
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTT
Sbjct: 702 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
G +E F +P R GMRH Y+KLDDDGL PG RVSG+DVIIGKT P ++DE +
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
RYT+RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 882 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATP
Sbjct: 942 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 1001
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHS
Sbjct: 1002 FNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC
Sbjct: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CG++AIAN + +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1122 CGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 1206 bits (3120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/832 (68%), Positives = 672/832 (80%), Gaps = 9/832 (1%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
MLPHVG DFCETKKAY+ GY++HRLLL +LGRR DDRDHYGNKRLDLAGPLL LFR
Sbjct: 348 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LF+ L ++VR Y QK +D GKD NL+ AIK IT GL+YSLATGNWG Q A RAGV
Sbjct: 408 LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGV 467
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 468 SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 527
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EEI+P+ I ATKIFVNGCWVGIHRDPE L+ T
Sbjct: 528 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 587
Query: 240 LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
LR+LRR++D+ +EV ++RDIR +E+RIYTD GR RPL IVE LL+KK + L++R
Sbjct: 588 LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKER 647
Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
+ + W LVA G +EYIDT EEET MI+M+ DL Q + + AY TYTHCEIHP+
Sbjct: 648 DY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPA 703
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYP KPLVTT
Sbjct: 704 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTT 763
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K
Sbjct: 764 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 823
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 536
+E+F +P R GMR+ YDKLDDDG+ PG RVSG+DV+IGKT P + DE
Sbjct: 824 VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
R+++RD S LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 884 SNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 656
KGT G+ Y QEDM +T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATP
Sbjct: 944 KGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003
Query: 657 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 715
F D V V IS L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 1004 FNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063
Query: 716 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 775
R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123
Query: 776 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827
CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++
Sbjct: 1124 CGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 1186 bits (3068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/862 (65%), Positives = 681/862 (79%), Gaps = 34/862 (3%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+ T + ET+KA++ GY+IHR+LLCAL RR DDRDH+G KRLDLAGPLL LFRM
Sbjct: 346 LLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRM 405
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LFRK+TRDV Y+QKCV+ ++ NL A+K+ IT+GL+YSLATGNWG Q + R GV
Sbjct: 406 LFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGV 465
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 466 SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 525
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+LM Y++VGS + PI+EFLEEWG E E+ +P+ P ATK+FVNG W+G+HRDP L +T
Sbjct: 526 SLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTET 585
Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 292
LR LRRR+D++ EV +VRDIR KELR++TD GR RPLFIV+ L I+K I
Sbjct: 586 LRSLRRRLDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHI 645
Query: 293 IALQQRES-----PEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------- 335
L + + PE GW LV+ G IEY+D EEEET MI+M+ DL
Sbjct: 646 QQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYE 705
Query: 336 VQARLHPEE-------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
V+ L P + + +THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 706 VKEELDPAQRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQ 765
Query: 389 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
AMG+Y+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQE
Sbjct: 766 AMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQE 825
Query: 449 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
DS+IMNQ+SIDRG FRS+F+R+Y D+EKK+G V E+F RP RS T+ M+HG+YDKL+DD
Sbjct: 826 DSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDD 885
Query: 509 GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTT 566
GL PGTRVSGED+IIGKT PI D E GQ ++ + +RD S LR +E+G+VDQV++TT
Sbjct: 886 GLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTT 945
Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
N +GL+FVKVR+RS RIPQIGDKF+SRHGQKGT+GMTY EDMP++ +GI PDII+NPHA
Sbjct: 946 NQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHA 1005
Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
IPSRMT+ L+EC + KV+A G EGDATPFTDVTV+ +SK L G+Q RGFE MY+GH
Sbjct: 1006 IPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGH 1065
Query: 687 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
TGR+L A +FLGPTYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERD
Sbjct: 1066 TGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1125
Query: 747 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 806
C I+HG S L+ERLFD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T QV++P
Sbjct: 1126 CQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLP 1185
Query: 807 YACKLLFQELMAMAIAPRMLTK 828
YA KLLFQELM+M IAPR+ TK
Sbjct: 1186 YAAKLLFQELMSMNIAPRLFTK 1207
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/859 (65%), Positives = 673/859 (78%), Gaps = 32/859 (3%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
LPH+ + E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+
Sbjct: 360 FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 419
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LF+KLT+D+ Y+Q+ V+ D N++ AI AKTITSGLKY+LATGNWG Q A +RAGV
Sbjct: 420 LFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 479
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 480 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 539
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+LM I+VG+ PI+ FL EWG E E+ P P AT++FVNG W G+HR+P L++T
Sbjct: 540 SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 599
Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 293
LR LRR+ D+N EV ++RDIR KEL+I+TD GR RPLFIVE + L ++K I
Sbjct: 600 LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIA 659
Query: 294 ALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
L E + +GG W L+ +G +EYID EEEE+ +I+M DL A + E
Sbjct: 660 KLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEN 719
Query: 345 A-------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
+A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 720 DLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 779
Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
+++TNY RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 780 VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 839
Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
IMNQSSIDRG FRSLFFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLDDDGL
Sbjct: 840 IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 899
Query: 512 PPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 569
PG RVSGEDVIIGKTTPIS DE + GQ + Y ++RD S LR +E G+VDQVL+TTN D
Sbjct: 900 APGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD 959
Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
GL+FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 960 GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPS 1019
Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
RMT+ LIEC++ KVAA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 1020 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 1079
Query: 690 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
+L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1080 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMI 1139
Query: 750 AHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYA 808
AHGA+ FLKERL + SDA+RVH+C CGL+ IA L N FEC+GC NK DI Q+HIPYA
Sbjct: 1140 AHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYA 1199
Query: 809 CKLLFQELMAMAIAPRMLT 827
KLLFQELMAM I PR+ T
Sbjct: 1200 AKLLFQELMAMNITPRLYT 1218
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/860 (64%), Positives = 675/860 (78%), Gaps = 33/860 (3%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
LPH+ + E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+
Sbjct: 358 FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 417
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LFRKLT+D+ Y+Q+ V+ D N++ AI AKTITSGLKY+LATGNWG Q A +RAGV
Sbjct: 418 LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 477
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 478 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 537
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+LM I+VG+ PI+ FL EWG E E+ P P AT++FVNG W G+HR+P L++T
Sbjct: 538 SLMSCISVGADPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 597
Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDII 293
LR LRR+ D+N EV ++RDIR +EL+I+TD GR RPLFIVE ++ L ++K +
Sbjct: 598 LRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVA 657
Query: 294 ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--- 341
L E ED W L+ +G +EYID EEEE+ +I+M DL +
Sbjct: 658 KLMATEYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDI 717
Query: 342 PEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 390
P+E +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 718 PKENVDLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 777
Query: 391 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 450
G+++TNY FRMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 778 GVFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDS 837
Query: 451 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 510
+IMNQSSIDRG FRSLFFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLD+DGL
Sbjct: 838 MIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGL 897
Query: 511 APPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 568
PG RVSGED+IIGKTTPI+ DE + GQ + Y ++RD S LR +E G+VDQVL+TTN
Sbjct: 898 IAPGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQ 957
Query: 569 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIP
Sbjct: 958 DGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIP 1017
Query: 629 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 688
SRMT+ LIEC++ KVAA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG
Sbjct: 1018 SRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTG 1077
Query: 689 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 748
++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCM
Sbjct: 1078 KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCM 1137
Query: 749 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPY 807
IAHGA+ FLKERL + SDA+RVH+C CGL++ IA L N FEC+GC NK DI Q+HIPY
Sbjct: 1138 IAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQIHIPY 1197
Query: 808 ACKLLFQELMAMAIAPRMLT 827
A KLLFQELMAM I PR+ T
Sbjct: 1198 AAKLLFQELMAMNITPRLYT 1217
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/847 (65%), Positives = 660/847 (77%), Gaps = 12/847 (1%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPHVG + CETKKA++ GY++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR
Sbjct: 353 LLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRS 412
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LFR L +++R QK ++ D L +K TIT GL YSLATGNWG Q A +RAGV
Sbjct: 413 LFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGV 472
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNL
Sbjct: 473 SQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNL 532
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
ALM YI+VGS PILEFLEEW EN EE+SP+ I ATKIFVNG WVGIHR+P+ L+ T
Sbjct: 533 ALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTT 592
Query: 240 LRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
L++LRR++D+ +EV +VRDIR +E+RIYTD GR RPL IVE Q+L +KKR I L++
Sbjct: 593 LKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEA 652
Query: 299 ESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 357
+ W DLV G +E ID+ EEET+MI+M DL Y DT+THCEIHP
Sbjct: 653 ADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSG------GYCDTHTHCEIHP 706
Query: 358 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 417
++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+ RMDTLA+VLYYPQKPLVT
Sbjct: 707 AMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 766
Query: 418 TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 477
TR+ME+L F +LPAGINAIVAI YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E
Sbjct: 767 TRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEAN 826
Query: 478 MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEA 535
+ +E +P R GMRH YDKLD+DG+ PG RVSG+DVIIGKT P D+
Sbjct: 827 LDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDL 886
Query: 536 QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 595
+Y +RD S LR SETG+VDQV+L+ N+DG +FVK+R+RSVR+PQIGDKF+SRHG
Sbjct: 887 DASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHG 946
Query: 596 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 655
QKGT+G+ Y QEDMP+T EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDAT
Sbjct: 947 QKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDAT 1006
Query: 656 PFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
PF D V V IS L + GY +RG E MYNGHTG++LT IF GPTYYQRLKHMVDDKIH
Sbjct: 1007 PFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIH 1066
Query: 715 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 774
SR RGP+Q++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC
Sbjct: 1067 SRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCN 1126
Query: 775 HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQS 834
+CGLI +ANL+ NSFEC+ C+NKT + V IPYACKLLFQELM+M+IAPR++ K +
Sbjct: 1127 NCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPRQSKR 1186
Query: 835 KDHKKKG 841
H+ +
Sbjct: 1187 SKHQSEA 1193
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 1164 bits (3012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/875 (64%), Positives = 677/875 (77%), Gaps = 47/875 (5%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LP++ + ET+KA++ GY+++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR+
Sbjct: 354 LLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRI 413
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LF+KLT+D+ Y+Q+CV+N K NL A+K++TIT GL+YSLATGNWG Q A +RAGV
Sbjct: 414 LFKKLTKDIYNYMQRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGV 473
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 474 SQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 533
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+LM I+VG+ + PIL FLEEWG E E+ P+ P +T++FVNG WVG HR+P LV T
Sbjct: 534 SLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDT 593
Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI 292
+R LRRR D++ EV ++RDIR KE +I+TD GR RPLFIV+ K L ++K I
Sbjct: 594 MRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHI 653
Query: 293 IALQQRESPEDG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 335
L E E+ GW LV G +EY+D EEEET MI+MT DL
Sbjct: 654 HKLLNAEYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKS 713
Query: 336 -----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 376
Q L EE D T+THCEIHPS+ILGV ASIIPFPDHNQS
Sbjct: 714 SLTATQQKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQS 773
Query: 377 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 436
PRNTYQSAMGKQAMG+++TNY RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAI
Sbjct: 774 PRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAI 833
Query: 437 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 496
VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFR+Y D EK+ G E F +P RS+T+
Sbjct: 834 VAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLR 893
Query: 497 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHS 554
++HG+Y+KLDDDGL PG RVSGED+IIGKTTPI D E GQ ++Y T+RD S LR +
Sbjct: 894 LKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRST 953
Query: 555 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614
E+G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY EDMP+T +
Sbjct: 954 ESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQ 1013
Query: 615 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674
GI PD+I+NPHAIPSRMT+ LIEC++ KV++ G EGDA+PFTDVT + +SK L + GY
Sbjct: 1014 GIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGY 1073
Query: 675 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734
Q RGFE MY+GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSR
Sbjct: 1074 QSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1133
Query: 735 DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 793
DGGLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC CGL++ IANLKKN FECR
Sbjct: 1134 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRS 1193
Query: 794 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 828
CKNKT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1194 CKNKTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1228
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 1164 bits (3010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/862 (64%), Positives = 674/862 (78%), Gaps = 35/862 (4%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
LPH+ + E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+
Sbjct: 355 FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 414
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LFRKLTRD+ ++Q+ V+ KD NL+ A+KA TIT+GLKY+LATGNWG Q A +RAGV
Sbjct: 415 LFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGV 474
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+LM I+VG+ PI+ FL EWG E E+ P P AT++FVNG W GIHR+P LV T
Sbjct: 535 SLMSCISVGTDPVPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDT 594
Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDI 292
+R+LRR+ D+ EV +VRDIR KEL+I+TD GR RPLF+V + L ++K I
Sbjct: 595 IRKLRRKGDITAEVSIVRDIREKELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHI 654
Query: 293 IALQQRESPE-DGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQAR 339
L E + +GG W L+ G +EYID EEEET +I+M DL V
Sbjct: 655 RKLMLTEYQDIEGGFEDEDINYTWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQT 714
Query: 340 LHPEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
+ P + +++T+THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQ
Sbjct: 715 VDPSDELDPARRIKAIHHSNTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQ 774
Query: 389 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
AMG+++TNY RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQE
Sbjct: 775 AMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQE 834
Query: 449 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 508
DS+IMNQSSID G FRSLFFRSY D+EK++G + E F +P R+NT+ M+HG+Y+KLDDD
Sbjct: 835 DSMIMNQSSIDSGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDD 894
Query: 509 GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 566
GL PG RVSG+D+IIGKTTPI D E GQ + + ++RD S LR +E G+VDQVL+TT
Sbjct: 895 GLIAPGVRVSGDDIIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITT 954
Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
N +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHA
Sbjct: 955 NQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHA 1014
Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
IPSRMT+ LIEC++ KVAA G EGDA+PFTD+TVD ISK L + GYQ RGFE MYNGH
Sbjct: 1015 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISKLLREHGYQSRGFEVMYNGH 1074
Query: 687 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
TG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERD
Sbjct: 1075 TGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1134
Query: 747 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHI 805
CMIAHGA+ FLKERL + SDA+RVH+C CGL+ +A LK N FECRGCKNK DI QVHI
Sbjct: 1135 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIYQVHI 1194
Query: 806 PYACKLLFQELMAMAIAPRMLT 827
PYA KLLFQELMAM IAPR+ T
Sbjct: 1195 PYAAKLLFQELMAMNIAPRLYT 1216
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 1114 bits (2882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/831 (62%), Positives = 648/831 (77%), Gaps = 10/831 (1%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+GT +FCETKKAY+ GYI+ RLLL ALGRR DDRDHYG KR+DL+GPLL LFR
Sbjct: 319 VLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRT 378
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 119
LF+KL D ++QKC++NG++ N+ +KA IT G +Y+LATGNWG QA A TRAGV
Sbjct: 379 LFKKLCVDTTRHMQKCIENGREFNIALGLKASIITQGFRYALATGNWGDQAKAMQTRAGV 438
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
+QVLNR + STLSHLRR+N+PI +EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 439 AQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNL 498
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+LM YI+VGS++ P++EFLEE G E+ EEIS + + ATKIFVNG WVGIH DP L+K+
Sbjct: 499 SLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKS 558
Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 299
L+ LRR ++++ EV +VRDIR KE+R+ +D GR RPL +V+ +L+I DI L++ E
Sbjct: 559 LKLLRRSLEMDKEVSIVRDIREKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGE 618
Query: 300 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
W +LV GFIE++D EEEE +MI+M L + + +YTHCEIHP+L
Sbjct: 619 IK----WDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSDVSV-SYTHCEIHPAL 673
Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
ILG+CAS IPFPDHNQSPRNTYQSAMGKQAMGIY TN+ RMDTL+ +L+YPQKPLVTT+
Sbjct: 674 ILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTK 733
Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
+ME+L F++LP+G NA+VAIACYSGYNQEDS+IMNQS+IDRG FRS F+R+Y D+E
Sbjct: 734 SMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSR 793
Query: 480 TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQ 538
V E+F +P R + M++ +Y+KLDDDGL PGTRV+G+DV+IGK TPI E + +
Sbjct: 794 PGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKE 853
Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
A Y +D S ++R +ETG+VD V++T N DG +F KV+VRS RIPQ+GDKF+SRH QKG
Sbjct: 854 APVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKG 912
Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
T+G+T QEDMP+T EGI PDII+NPHAIPSRMTIG LIEC++GKV+A G+EGDATPF+
Sbjct: 913 TIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFS 972
Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
VTVD IS L G+Q RG E MYNG TGR+L A +F GPTYYQRLKHMVDDKIH+R R
Sbjct: 973 GVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARAR 1032
Query: 719 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
GP+QILTRQP EGRSRDGGLRFGEMERDC+I+HGAS FLKERL D SDAY +VC+ CGL
Sbjct: 1033 GPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCGL 1092
Query: 779 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
+A+ K N EC+GC N T++ V IPYA KLL QELM M IAPR+ +E
Sbjct: 1093 LAMGGSKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRIRFEE 1141
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/843 (45%), Positives = 521/843 (61%), Gaps = 35/843 (4%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
LPH+GT KK YY ++++L LGRR DD+DHY NKR+ LAG L LFR+
Sbjct: 295 FLPHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRV 354
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
F+ +D+ ++K G+ ++L ++A IT ++++LATGNW G R GVS
Sbjct: 355 AFKAFVKDLVYQLEKSKVRGRRLSLTALVRADIITERIRHALATGNW-----VGGRTGVS 409
Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
Q+L+R + S LSHLRR+ S + R + R LH +QWG MCP ETPEG GLVKNLA
Sbjct: 410 QLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLA 469
Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA---------TKIFVNGCWVGIHR 231
L+ ++VG + E G + E++ + Q +K+++NG +G +
Sbjct: 470 LLAQVSVGINESVVERVAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYE 529
Query: 232 DPEMLVKTLRRLRRRVDVNTEVGV--VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK 289
D + L K +R RR+ ++ EV V + L E+ I D GR RPL IV L+
Sbjct: 530 DGKELAKKIRESRRQGKLSDEVNVAYIATDYLNEVHINCDAGRVRRPLIIVNNGTPLVDT 589
Query: 290 RDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT 349
DI L+ E D DLV +G IE+ID EEEE +++ DL P+
Sbjct: 590 EDIKKLKNGEITFD----DLVKQGKIEFIDAEEEENAYVALNPQDLT-----PD------ 634
Query: 350 YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 409
+TH EI PS ILG+ ASIIP+P+HNQSPRNTYQSAM KQ++G+Y +NYQ R DT A++L+
Sbjct: 635 HTHLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLH 694
Query: 410 YPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR 469
YPQ PLV TR + + + PAG NAI+AI Y+GYN EDS+IMN+SSI+RG +RS FFR
Sbjct: 695 YPQMPLVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFR 754
Query: 470 SYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK-LDDDGLAPPGTRVSGEDVIIGKTT 528
Y EE K ++ P+ + G + Y + L+D+G+ P V G DV+IGK +
Sbjct: 755 LYSTEEVKYPGGQEDKIVTPE-AGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVS 813
Query: 529 PIS-QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 587
P E + + +RD SI RH E G+VD VL+T +G + VKVRVR +RIP+IG
Sbjct: 814 PPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGNKLVKVRVRDLRIPEIG 873
Query: 588 DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 647
DKF++RHGQKG VG+ Q DMP+T +GI PDII+NPHA+PSRMTIGQ++E I GK AA
Sbjct: 874 DKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAAL 933
Query: 648 MGKEGDATPFTDV-TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
GK DATPF + + + K + K G+ E +Y+G TG++L + I G YYQ+L
Sbjct: 934 SGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLH 993
Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
HMV DK+H+R RGPVQILTRQP EGR+R+GGLRFGEMERDC+I G + +K+RL D SD
Sbjct: 994 HMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSD 1053
Query: 767 AYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
V++C+ CG + + KN + C +K+ + V + YA KLL QELM+M I+PR++
Sbjct: 1054 KAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRLI 1113
Query: 827 TKE 829
E
Sbjct: 1114 LGE 1116
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/838 (44%), Positives = 521/838 (62%), Gaps = 35/838 (4%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+G + KAYY G + R+L +LG R EDD+DHY NKRL LAG LL LFR+
Sbjct: 301 LLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRV 360
Query: 61 LFRKLTRDVRAYVQKCVDNGKD----VNLQ----FAIKAKTITSGLKYSLATGNWGQANA 112
F +L +D++ + K + N+Q +I+ ++ ++++LATG+W
Sbjct: 361 AFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSW----- 415
Query: 113 AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 172
G R GVSQ+L+R Y STLSHLRR+ SP+ RE + R LH + WG +CP ETPEG
Sbjct: 416 PGGRTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPN 475
Query: 173 CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 232
CGLVKNLALM IT G + E+LE G EE P P ++++NG VG D
Sbjct: 476 CGLVKNLALMSQITTGVPEEEVREYLERLGVVPIEERRPN--PDLWRLYLNGVLVGTVED 533
Query: 233 PEMLVKTLRRLRRRVDVN--TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 290
E V +R RR ++ V + +D +KE+ + +D GR RPL IVE R + +
Sbjct: 534 GEGFVNRIRTDRRSGKISDIINVALYQDEDVKEIYVNSDDGRVRRPLIIVENGRPKLTRE 593
Query: 291 DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 350
+ A++ W DLV G IEY+D EEEE +++ P E + +
Sbjct: 594 HVEAIKNGSLT----WSDLVKMGVIEYLDAEEEENALVAT----------WPWEV-TEEH 638
Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
TH E+ P+ ILG+ AS++P+P+HN PRNTY + M KQ++G+ N++ R+DT ++++Y
Sbjct: 639 THLELMPAAILGIPASLVPYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHY 698
Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
PQ PLV +R M+ + F + PAG N +VA+ Y+GYN ED++IMN++SI+RG RS FFR+
Sbjct: 699 PQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRT 758
Query: 471 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP- 529
Y EEK+ + F PD + + Y LD+DG+ P ++V+G+DV++G+T+P
Sbjct: 759 YEAEEKRYLGGQTDRFEIPDPTIQGYLGERYYRHLDEDGIIFPESKVNGKDVLVGRTSPP 818
Query: 530 --ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 587
+ + G RR+ S+++R SETG+VD+V++T DG + VKV R +RIP+ G
Sbjct: 819 RFLEEQSGLGGIILQERRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPEFG 878
Query: 588 DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 647
DKF+SRHGQKG +G+ QEDMPWT GI PD+IVNPH IPSRMT+GQLIE I GKVA+
Sbjct: 879 DKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASL 938
Query: 648 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 707
G+ D T F + + K L + G++ G E MY+G TGRRL A +F+G YYQRL H
Sbjct: 939 KGRRVDGTAFIGEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHH 998
Query: 708 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDA 767
MV DK+H+R RGPVQ+LT+QP EGR+R+GGLRFGEMERD +I HGA+ L ERL ++SD
Sbjct: 999 MVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDK 1058
Query: 768 YRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
V VCE+CG IA+ + ++ C C + I +V + YA KLL EL AM I P +
Sbjct: 1059 TEVWVCENCGHIALEDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMGIRPSL 1116
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/862 (41%), Positives = 523/862 (60%), Gaps = 50/862 (5%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+G +KA Y G + LL +LG R EDD+DH NKR+ LAG L+ LFR
Sbjct: 343 LLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDKDHLANKRIKLAGDLMDELFRS 402
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
F+ + +D++ ++K + + + ++ A++ +T + ++++TGNW G R GVS
Sbjct: 403 AFQSVMKDLKYQLEKTYNRKRGIKIRPAVRQDLLTQRVLHAMSTGNW-----IGGRTGVS 457
Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
Q+L+R++ ST+SHLRR+ SP+ R + R LH +QWG +CP ETPEGQ CGLVKN A
Sbjct: 458 QLLDRVSNLSTISHLRRIISPLTRTQPHFEARDLHPTQWGRICPNETPEGQNCGLVKNAA 517
Query: 181 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 240
L++ +T G ++E L+ E SP + ++++NG ++G H DP LV +
Sbjct: 518 LLINVTQGIDPDSVMEILKGMDVREVLEESP----KKGRVYLNGDFIGYHDDPRYLVSRI 573
Query: 241 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
R RR ++ EV V D E+ + +D GR RPL I++ + ++ + I L+ E
Sbjct: 574 REERRSGRMSDEVNVRYDDNTNEVIVNSDRGRLRRPLLILKDGKTVLDRTMIERLKHGEI 633
Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA---------------------- 338
+ DLV +G IE++D EEEE T +++ D+ +
Sbjct: 634 ----SFEDLVKQGAIEWLDAEEEEDTYVAVYAYDIPEKCPHCNSYLYRSMVDWVNPGESE 689
Query: 339 ----------RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 388
R + + TH EI P++ILGV ASIIP+P+HN SPR T SAM KQ
Sbjct: 690 ITLECGFCHQRFNVPSKLSKENTHLEIDPAMILGVVASIIPYPEHNSSPRITIASAMAKQ 749
Query: 389 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 448
++G +N + R DT ++L+YPQ PLV TR M+++H+ + PAG N +VA+ Y GYN +
Sbjct: 750 SLGFAQSNVRIRPDTRGHLLHYPQVPLVRTRVMDYIHYDRRPAGQNFVVAVLSYEGYNIQ 809
Query: 449 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK-LDD 507
D++++N+++I+RG RS FFR+Y EE++ ++ F P + +G R Y K LDD
Sbjct: 810 DALVINKAAIERGLGRSTFFRTYSAEERRYPGGQEDKFEIPTH-DIIGARAEEYYKNLDD 868
Query: 508 DGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 566
G+ P V G DV+IGKT+P +E + + RR+ S+++R +E+G VD V LT
Sbjct: 869 SGIIFPEAYVEGSDVLIGKTSPPRFLEEGEERLGPQRRRESSVTMRPNESGYVDNVFLTV 928
Query: 567 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 626
+ R VK++VRS RIP++GDKF+SRHGQKG VG+ QEDMP+T +GI PD+I NPH+
Sbjct: 929 SESNSRVVKIKVRSERIPELGDKFASRHGQKGVVGLVVPQEDMPFTEDGIIPDLIFNPHS 988
Query: 627 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 686
IPSRMT+G ++E I GK+A+ G+ D T F+ ++ AL K G++ E MY+G
Sbjct: 989 IPSRMTVGHILEMIGGKIASRTGRFIDGTIFSGEPEKSLRDALVKYGFRKSSTEVMYDGI 1048
Query: 687 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 746
TGRR A IF+G YYQ+L HMV K H+R RGPVQILTRQP EGRSR GGLRFGEMERD
Sbjct: 1049 TGRRFKADIFVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERD 1108
Query: 747 CMIAHGASHFLKERLFDQSDAYRVHVCEH--CGLIAIANLKKNSFECRGCKNKTDIVQVH 804
+IAHGA+ +K+RL DQSD ++VC + CG IAI + +K + C C N +I +
Sbjct: 1109 TLIAHGAAMVIKDRLLDQSDGTVLYVCGNPSCGHIAIYDRRKGTLRCPVCGNTGNIYPIE 1168
Query: 805 IPYACKLLFQELMAMAIAPRML 826
YA KL+ EL+++ + R++
Sbjct: 1169 TSYAFKLMRDELISLGVVMRLM 1190
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/871 (42%), Positives = 522/871 (59%), Gaps = 60/871 (6%)
Query: 1 MLPHV--GTGD--FCETKKAYYFGYIIHRLLLCAL--GRRAE-----DDRDHYGNKRLDL 49
+LPH+ GTGD + KA+Y Y+IH+LL C L R E DDRD NKR+DL
Sbjct: 337 VLPHITSGTGDPEIDKIYKAHYICYMIHKLLKCYLRGAREVEEYRGCDDRDSMVNKRIDL 396
Query: 50 AGPLLGGLFRMLFRKLTRDV-RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 108
G LLGGLF+ + K+ D + + K +D+ K N+ IK +I GL+ +L+TGN+G
Sbjct: 397 TGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPPNIIPHIKPNSIEQGLRQALSTGNFG 456
Query: 109 QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI--GREGKLAKPRQLHNSQWGMMCPAE 166
+ +R G+SQ+LNR+ + +LS++RR+ +P K+ PR LHN+Q+G MCP E
Sbjct: 457 ----SQSRKGLSQMLNRMNHLHSLSYMRRVITPTVDASTMKMTSPRHLHNTQYGSMCPLE 512
Query: 167 TPEGQA-CGLVKNLALMVYITVG-SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 224
+PEG+ GLVKN+A+M IT+ ++ PI+E E + + Q K+F+NG
Sbjct: 513 SPEGKPKTGLVKNMAMMEGITINMNSQIPIIESYLIGKITTLESANKKRLHQYVKVFLNG 572
Query: 225 CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 284
W+G+ R+ + LR +R R +++ VG+V + + E IYTD GR RP V +
Sbjct: 573 NWLGVTRNIIKIHNDLRAMRFRGELSRMVGLVLNYKTAEFHIYTDGGRLIRPYLTVTDNK 632
Query: 285 LLIKKRDIIALQQRESPEDGGWHDLVAK--GFIEYIDTEEEETTMISM------------ 330
L K + E W + +AK IEY+D EEE+ M+++
Sbjct: 633 LNFKPEML--------DEVNSWEEFLAKFPEVIEYVDKEEEQNIMLAVFPQYIQDANRIM 684
Query: 331 ---------TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 381
+N + + + + Y YTHCEIHP +ILG+ +S IPFPDHNQSPR +
Sbjct: 685 SKKPINSRDQLNKINRTNRYDDNVYV-RYTHCEIHPCMILGLISSNIPFPDHNQSPRGIF 743
Query: 382 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 441
Q +QAMG+Y+++Y+ R D ++Y+LY+PQ PLVT+RA ++ PAG N+IVAIA
Sbjct: 744 QYNQARQAMGLYISDYRERTD-ISYILYHPQIPLVTSRASKYTGTHIFPAGENSIVAIAS 802
Query: 442 YSGY-NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED-FGRPDRSNTMGMRH 499
Y+G NQEDS+++N S+I +G+ R+ + Y + KK + F +PDR+ +R
Sbjct: 803 YTGLMNQEDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSIFMKPDRNKVDNLRD 862
Query: 500 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMV 559
+YDKL ++G A T + DV+IG P + A+ +Y +D S + G V
Sbjct: 863 ANYDKLSEEGYAKVETVIRDGDVVIGVVNP--KPTAREDEKQY--KDASSIYKSLIPGAV 918
Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
D+V+ N DG +K+R+RS RIP +GDKFSSR GQKGT+G + DM ++ G+ PD
Sbjct: 919 DKVITEVNNDGYPIIKMRIRSERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPD 978
Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 679
II+NP+ +P RMTIGQLIEC++GK+ A G GDATPFT V ++ I+ L GY+ G
Sbjct: 979 IIINPNCMPKRMTIGQLIECLLGKLCAVKGVYGDATPFTSVDLNAINDELVAAGYEEWGN 1038
Query: 680 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 739
ETMYNG G++L IF+GPTYYQRLK MV DK HSR RGP Q+LTRQ EGRSRDGGLR
Sbjct: 1039 ETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLR 1098
Query: 740 FG-EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKT 798
G EMERD + AHG + FLKE+ D SD Y HVC+ CG A +K + C GC+N T
Sbjct: 1099 IGFEMERDALCAHGVAQFLKEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTT 1158
Query: 799 DIVQVHIPYACKLLFQELMAMAIAPRMLTKE 829
I ++ IPYA KLL QEL ++ I ++ T +
Sbjct: 1159 SISKIVIPYAFKLLLQELASINILGKIRTSK 1189
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/832 (40%), Positives = 495/832 (59%), Gaps = 27/832 (3%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F KA Y ++ R++ L + DDRD+YGNKRL+LAG LL +F
Sbjct: 323 ILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFED 382
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+++ +++ K + K ++A IT+GL+ ++++GNW RAG
Sbjct: 383 LFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKMERAG 442
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R+NS + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 443 VTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 502
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENFEEIS--PAVIPQATKIFVNGCWVGIHRDPEML 236
LALM +IT P++ G E+ E+S P P +F+NG +G+ + + L
Sbjct: 503 LALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHL 562
Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
V+ LR +RR+ + + V V + + I+TD GR RP IVE +R L+K+ + L
Sbjct: 563 VRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELN 622
Query: 297 QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIH 356
+ D D + G IEY+D EE + I+ E+ D TH EI
Sbjct: 623 RGIRKFD----DFLLDGLIEYLDVNEENDSFIAWN-----------EDQIEDRTTHLEIE 667
Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
P +LGVCA ++P+P HNQSPRNTYQ AMGKQAMG+ N + R+D+L Y L YP P+V
Sbjct: 668 PFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMV 727
Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
++ +E +F +LPAG NA VA+ YSGY+ ED++I+N++SIDRG+ R L +++ + K
Sbjct: 728 KSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 787
Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDE 534
+ + P + +D LD DG+ PG +V + ++I K P S +
Sbjct: 788 RYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNP 847
Query: 535 AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 594
QGQ+++ IS + E +++V+++ NA+ +K+ +R RIP+IGDKFSSRH
Sbjct: 848 LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRH 907
Query: 595 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 654
GQKG G+ QEDMP+ GI PD+I+NPH PSRMT+G+ +E + GK GK
Sbjct: 908 GQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYG 967
Query: 655 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 714
T F V++I L + G+ G + Y+G TG L A I+ GP YYQ+LKHMV DK+H
Sbjct: 968 TAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMH 1027
Query: 715 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 774
+R RGP +LTRQP +GRSR+GGLR GEMERDC+I++GAS + ERL SDA+ V VC
Sbjct: 1028 ARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCR 1087
Query: 775 HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
CG +A + C C++ ++ ++ +PYACKLLFQEL +M + P+M+
Sbjct: 1088 TCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMI 1133
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/846 (41%), Positives = 492/846 (58%), Gaps = 37/846 (4%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L H+ + KA Y G + R+L+ + DDRD+ GNKRL+LAG LL LF
Sbjct: 342 VLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFED 401
Query: 61 LFRKLTRDVRAYVQKCVDNGK-----DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 115
LF+K D++ + K + D Q + + IT G+ +L+TGNW
Sbjct: 402 LFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFKME 461
Query: 116 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 175
RAGV+ VL+RL+Y S L + R+ S + K++ PR L SQ+GM+C ++TPEG+ACGL
Sbjct: 462 RAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGL 521
Query: 176 VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ--ATKIFVNGCWVGIHRDP 233
VKNLALM +IT PI++ +G E+ IS + +++NG +GI R P
Sbjct: 522 VKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYLNGAILGISRYP 581
Query: 234 EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ V + R+LRR ++ +G+ + + + I TD GR RPL IV+ ++ + I
Sbjct: 582 SLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLPKVESKHIR 641
Query: 294 ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 353
L++ + G+ D + +G +EY+D EE ++IS+ D+ DT TH
Sbjct: 642 LLKEGK----WGFEDFLKQGLVEYVDVNEENDSLISVYERDIT----------PDT-THL 686
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL Y++ YPQ+
Sbjct: 687 EIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQ 746
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
P+V T+ +E + + +LPAG NA VAI YSGY+ ED++++N+SSIDRGF R F +
Sbjct: 747 PMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSV 806
Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP---- 529
+K + G P R G + ++DDGLA G RV + + K TP
Sbjct: 807 IVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNAL 866
Query: 530 ---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 586
I+ Q S Y + ++ + E G +D+V+LTT +KV +R R P++
Sbjct: 867 DNSITLGHTQTVESGY--KATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPEL 924
Query: 587 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 646
GDKFSSRHGQKG G+ QEDMP+ +GI PDII+NPH PSRMT+G++IE + GKV
Sbjct: 925 GDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGV 984
Query: 647 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
G T F V++ S+ L + GY G + + +G TG L A IF+GP YYQ+LK
Sbjct: 985 LRGTLEYGTCFGGTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLK 1044
Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
HMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+IA+GAS L ERL SD
Sbjct: 1045 HMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSD 1104
Query: 767 AYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 826
A V VC CGL+ C C++ ++V++ IPYA KLLFQEL++M I PR+
Sbjct: 1105 ACDVDVCGQCGLLGYKGW------CNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLA 1158
Query: 827 TKEDTK 832
+++ K
Sbjct: 1159 LEDEFK 1164
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/849 (41%), Positives = 501/849 (59%), Gaps = 63/849 (7%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 317 ILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 375
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 376 LFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 435
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 436 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDP 233
LALM +IT PI++ G E+ EE+S P +F+NG +G+ RD
Sbjct: 496 LALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDH 552
Query: 234 EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ LV T R +RR +N V + ++ + + I +D GR RP IV+KQ+ + + +
Sbjct: 553 KKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHME 612
Query: 294 ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISM---TINDLVQARLHPEEAYADTY 350
L Q + D + + +EY+D EE I++ TIN DT
Sbjct: 613 ELAQGYR----NFEDFLHESLVEYLDVNEENDCNIALYEHTINK-------------DT- 654
Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L Y
Sbjct: 655 THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAY 714
Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
PQKP+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++
Sbjct: 715 PQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKN 774
Query: 471 -------YRDE--EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 521
Y ++ +K MG ++ +P RH + LD DG+ PG +V +
Sbjct: 775 AKCTLKRYTNQTFDKVMGPMLDAATRKPI------WRH---EILDADGICSPGEKVENKQ 825
Query: 522 VIIGKTTP-ISQDEAQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
V++ K+ P ++Q +G Q +Y +D I+ + + +++V++++NA+ +K+
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKM 883
Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
+R R P+IGDKFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+L
Sbjct: 884 LLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 943
Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
IE + GK G+ T F V ++ + L + GY G + + +G TG L A I+
Sbjct: 944 IELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIY 1003
Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS
Sbjct: 1004 FGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASML 1063
Query: 757 LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
L ERL SDA+ V VC CGL+ + C CK+ + + IPYACKLLFQEL
Sbjct: 1064 LLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQEL 1117
Query: 817 MAMAIAPRM 825
+M I PR+
Sbjct: 1118 QSMNIIPRL 1126
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 633 bits (1633), Expect = e-180, Method: Compositional matrix adjust.
Identities = 351/849 (41%), Positives = 501/849 (59%), Gaps = 63/849 (7%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV +F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF
Sbjct: 317 ILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFED 375
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAG 118
LF+K +++ + + + ++ IT+G+ +++TGNW R G
Sbjct: 376 LFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQG 435
Query: 119 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 178
V+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKN
Sbjct: 436 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 495
Query: 179 LALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDP 233
LALM +IT PI++ G E+ EE+S P +F+NG +G+ RD
Sbjct: 496 LALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDH 552
Query: 234 EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
+ LV T R +RR +N V + ++ + + I +D GR RP IV+KQ+ + + +
Sbjct: 553 KKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHME 612
Query: 294 ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISM---TINDLVQARLHPEEAYADTY 350
L Q + D + + +EY+D EE I++ TIN DT
Sbjct: 613 ELAQGYR----NFEDFLHESLVEYLDVNEENDCNIALYEHTINK-------------DT- 654
Query: 351 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 410
TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L Y
Sbjct: 655 THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAY 714
Query: 411 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 470
PQKP+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++
Sbjct: 715 PQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKN 774
Query: 471 -------YRDE--EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 521
Y ++ +K MG ++ +P RH + LD DG+ PG +V +
Sbjct: 775 AKCTLKRYTNQTFDKVMGPMLDAATRKPI------WRH---EILDADGICSPGEKVENKQ 825
Query: 522 VIIGKTTP-ISQDEAQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 576
V++ K+ P ++Q +G Q +Y +D I+ + + +++V++++NA+ +K+
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKM 883
Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 636
+R R P+IGDKFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+L
Sbjct: 884 LLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 943
Query: 637 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
IE + GK G+ T F V ++ + L + GY G + + +G TG L A I+
Sbjct: 944 IELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIY 1003
Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS
Sbjct: 1004 FGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASML 1063
Query: 757 LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
L ERL SDA+ V VC CGL+ + C CK+ + + IPYACKLLFQEL
Sbjct: 1064 LLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQEL 1117
Query: 817 MAMAIAPRM 825
+M I PR+
Sbjct: 1118 QSMNIIPRL 1126
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2
Length = 1149
Score = 620 bits (1600), Expect = e-176, Method: Compositional matrix adjust.
Identities = 343/827 (41%), Positives = 474/827 (57%), Gaps = 36/827 (4%)
Query: 9 DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 68
DF E KA Y + R+++ + DDRD+ GNKRL+LAG L+ LF LF+K D
Sbjct: 341 DFRE--KALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNND 398
Query: 69 VRAYVQKCVDNGK-----DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVL 123
+ + K + D L + + ITSGL +++TGNW RAGV+ VL
Sbjct: 399 FKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVL 458
Query: 124 NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 183
+RL+Y S L + R++S + K++ PR L SQ+GM+C A+TPEG+ACGLVKNLALM
Sbjct: 459 SRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMT 518
Query: 184 YITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRL 243
+IT PI + G E+ I A + +++NG +G R P V R L
Sbjct: 519 HITTDDEEEPIKKLCYVLGVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHL 578
Query: 244 RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 303
RR V+ + + + + I TD GR RPL IV + +K + L E D
Sbjct: 579 RRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFD 638
Query: 304 GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGV 363
D + G +EY+D EE + I++ D+V + TH EI P ILG
Sbjct: 639 ----DFLKLGLVEYLDVNEENDSYIALYEKDIVP-----------SMTHLEIEPFTILGA 683
Query: 364 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 423
A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL Y++ YPQ+P+V T+ +E
Sbjct: 684 VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIEL 743
Query: 424 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 483
+ + +LPAG NA VA+ YSGY+ ED++++N+SSIDRGF R R K+ +
Sbjct: 744 IDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQ 803
Query: 484 EDFG--RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR 541
+ G R D + +H S L DGL G +V + I K+ P + +A +
Sbjct: 804 DIIGGMRVDENGDPIWQHQS---LGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNV 860
Query: 542 YTR---RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
+ R+ + R E +DQV+++ + + +KV +R R P++GDKFSSRHGQKG
Sbjct: 861 NVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKG 920
Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
G+ QEDMP+ +GI PDII+NPH PSRMT+G++IE I GK G T F
Sbjct: 921 VCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG 980
Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 718
++++SK L G+ G + +Y+G TG L A IF GP YYQ+LKHMV DK+H+R R
Sbjct: 981 GSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARAR 1040
Query: 719 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 778
GP +LTRQP EGRSRDGGLR GEMERDC+IA+GAS L ERL SDA+ V VC+ CGL
Sbjct: 1041 GPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGL 1100
Query: 779 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
+ + C CK+ +I+++ IPYA KLLFQEL++M IAPR+
Sbjct: 1101 MGYSGW------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRL 1141
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 565 bits (1456), Expect = e-160, Method: Compositional matrix adjust.
Identities = 281/616 (45%), Positives = 399/616 (64%), Gaps = 22/616 (3%)
Query: 218 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 277
TKI++NG +G +PE V+ +R+ RR +V+ E+ + E+ I+TD GR RPL
Sbjct: 4 TKIYINGKLIGTCENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRARRPL 63
Query: 278 FIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
IVE L+ + + L+ E W DL+A G IEY+D EEEE I+M+ +++
Sbjct: 64 IIVEDGEPLLTEEHLEKLETGEM----SWDDLIAAGIIEYLDAEEEENAYIAMSPDEI-- 117
Query: 338 ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
D +TH EI PS +LG+CA IIPF +HN SPRNT ++ M KQA+G+Y +NY
Sbjct: 118 ---------NDEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNY 168
Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
R DT A++L++PQ P+V TR ++ + + P+G N +VA+ Y GYN ED++I+N++S
Sbjct: 169 DLRTDTRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKAS 228
Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
++RG RS FFRSY E++ ++ F P++ Y LD+DG+ P V
Sbjct: 229 LERGLARSSFFRSYEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEV 288
Query: 518 SGEDVIIGKTTPI----SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
S DV+IGKT+P DE A R RR+ S+++RH E G+VD VLLT +G R
Sbjct: 289 SSGDVLIGKTSPPRFLEEIDEFGTVAER--RRETSVTVRHGEKGIVDAVLLTETVEGSRL 346
Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
K+RVR R P++GDKF+SRHGQKG VG+ +QEDMP+T +GI PD+IVNPHAIPSRM++
Sbjct: 347 AKIRVREQRQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSV 406
Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
GQ++E + GK A G+ D TPFT D+I +AL G++ G E++YNG TG R+ A
Sbjct: 407 GQVLEMLAGKAACMEGRRVDGTPFTGEDEDDIKEALRANGFETAGVESLYNGITGERIEA 466
Query: 694 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 753
IF+G YYQ+L HM DK+++R RGPVQ+LTRQP EGR+R+GGLRFGEMERDC+IAHGA
Sbjct: 467 EIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGA 526
Query: 754 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 813
+ LKERL D+SD Y VC CG+IA+ + ++ C C++ ++ V + YA KLL
Sbjct: 527 ALALKERLLDESDKYEALVCADCGMIAVYDKIRDKKYCPICED-SESFPVEVSYAFKLLL 585
Query: 814 QELMAMAIAPRMLTKE 829
EL ++ I P+++ ++
Sbjct: 586 DELKSLCIFPKLILED 601
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 560 bits (1442), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/617 (46%), Positives = 400/617 (64%), Gaps = 23/617 (3%)
Query: 218 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 277
TKI++NG +G +PE V+ +R RR +V+ E+ + E+ I+TD GR RPL
Sbjct: 4 TKIYINGKLIGTCDNPEEFVEEIRAKRRSGEVSHEMNITHYPENHEIYIFTDPGRARRPL 63
Query: 278 FIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 337
IVE L+K+ + L E W DL+++G IEY+D EEEE T I+M+
Sbjct: 64 IIVEDGEPLLKEEHLEKLSSGEME----WDDLISQGIIEYLDAEEEENTYIAMS------ 113
Query: 338 ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 397
PEE + +TH EI PS +LG+CA IIPF +HN SPRNT ++ M KQA+G+Y +NY
Sbjct: 114 ----PEEV-TEEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNY 168
Query: 398 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 457
R DT A++L++PQ P+V TR ++ + + P+G N +VA+ Y GYN ED++I+N++S
Sbjct: 169 NLRTDTRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKAS 228
Query: 458 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 517
++RG RS FFRSY E++ ++ F P++ Y LD+DG+ P T V
Sbjct: 229 LERGLARSSFFRSYEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIINPETEV 288
Query: 518 SGEDVIIGKTTPI----SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
S DV+IGKT+P DE A R RR+ S+++RH E G+VD VLLT +G R
Sbjct: 289 SSGDVLIGKTSPPRFLEEIDEFGTVAER--RRETSVTVRHGEEGIVDAVLLTETVEGSRL 346
Query: 574 VKVRVRSVRIPQ-IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
K+RVR R P+ IGDKF+SRHGQKG VG+ +QEDMP+T +G+ PD+IVNPHAIPSRM+
Sbjct: 347 AKIRVREQRQPEFIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMS 406
Query: 633 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 692
+GQ++E + GK A G+ D TPFT ++ +AL G++ G ET+YNG TG R+
Sbjct: 407 VGQVLEMLAGKAACMEGRRVDGTPFTGEEEKDLKEALKANGFESAGVETLYNGITGERIE 466
Query: 693 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 752
A IF+G YYQ+L HM D+I++R RGPVQ+LTRQP EGR+R+GGLRFGEMERDC+IAHG
Sbjct: 467 AEIFIGVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHG 526
Query: 753 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLL 812
A+ LKERL D+SD Y VC CG+IAI + ++ C C++ ++ V I YA KLL
Sbjct: 527 AALALKERLLDESDKYEALVCAECGMIAIYDKIRDKKYCPICED-SESFPVEISYAFKLL 585
Query: 813 FQELMAMAIAPRMLTKE 829
EL ++ I P+++ ++
Sbjct: 586 LDELKSLCIFPKLVLED 602
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 327/844 (38%), Positives = 462/844 (54%), Gaps = 69/844 (8%)
Query: 14 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 73
KKA + GY++ LL G+R ++RD + NKR++LAG LL R+ R + +
Sbjct: 367 KKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAM 426
Query: 74 QKCVDNGKDVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYAST 131
QK + D+ ++ + A IT+GL + +TG W R +GV L R T
Sbjct: 427 QKHLSGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQT 486
Query: 132 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 191
L LRR + GK+ R H S WG +C TP+G+ CGLVKN++L+ ++ S
Sbjct: 487 LIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLE 546
Query: 192 YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 251
++E L G E + + + K+ +NG WVG+ D E V L+ RR+ ++
Sbjct: 547 -SVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPR 605
Query: 252 EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVA 311
E+ + RD E+RI+TD GR RPL +VE + L ++E P + L+
Sbjct: 606 EMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKL----------KQEKPSQYPFDHLLD 655
Query: 312 KGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFP 371
G +E I EEEE + I L++ YTHCE+ S +LGV +++PF
Sbjct: 656 HGILELIGIEEEEDCNTAWGIKQLLKE--------PKIYTHCELDLSFLLGVSCAVVPFA 707
Query: 372 DHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 430
+H+ R YQS +QA+G TN R DTL+ L+YPQKPL T A E L L
Sbjct: 708 NHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLF 767
Query: 431 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--------EKKMGTLV 482
G NAIVA+ + GYNQEDS++MN++S++RG FRS RSY+ E KKM LV
Sbjct: 768 NGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELV 827
Query: 483 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRY 542
+ FG+ + G D L+DDG G +S D++IG+ T
Sbjct: 828 Q--FGKTHS------KIGKVDSLEDDGFPFIGANMSTGDIVIGRCTE------------- 866
Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
+ DHSI L+H+E G+V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G
Sbjct: 867 SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGY 926
Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK-VAAHMGKEGD-------- 653
Q++ P+T++GI PDI++NPHA PSR T GQL+E + K +A + KEG
Sbjct: 927 LEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLT 986
Query: 654 --ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
ATPF+ V I++ LH+ G+ G E +YNG +G + +MIF+GPT+YQRL HM +D
Sbjct: 987 RHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSED 1046
Query: 712 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 771
K+ R GPV LTRQP R R GG++FGEMERDC+IAHGAS L ERLF SD+ ++H
Sbjct: 1047 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMH 1106
Query: 772 VCEHCGLIA-------IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPR 824
+C C A + K CR C + +V+V++PY KLL QEL +M I
Sbjct: 1107 ICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLN 1166
Query: 825 MLTK 828
TK
Sbjct: 1167 FDTK 1170
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 264/616 (42%), Positives = 379/616 (61%), Gaps = 20/616 (3%)
Query: 218 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV-VRDIRLKELRIYTDYGRCSRP 276
K++VNG VG H +PE L + +R RRR +V+ V V VRD R E+ + D GR RP
Sbjct: 7 AKVYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRD-RTGEVIVNADAGRARRP 65
Query: 277 LFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
L +VE ++ + ++ A++ D + DLV G +E+ID EEEE ++ +
Sbjct: 66 LLVVENGEPVVTQEEVEAVKNG----DIDFEDLVEAGKVEFIDAEEEEDILVGVE----- 116
Query: 337 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
EE +TH EI P LI G+ A +IP+P+HN SPR T + M KQ++G+ N
Sbjct: 117 ------EEELTTDHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAAN 170
Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
Y+ R DT ++L+YPQK +V T+ E + + PAG N +VA+ Y G+N ED+++MN+
Sbjct: 171 YRIRPDTRQHLLHYPQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKG 230
Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
S++R RS FFR+Y EE++ ++ F P +Y LDDDGL P T+
Sbjct: 231 SVERALSRSHFFRTYEGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETK 290
Query: 517 VSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
V V++GKT+P + + E G S RR+ S+++R E G+VD V L DG +
Sbjct: 291 VDDSSVLLGKTSPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKL 350
Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
KV VR RIP++GDKF+SRHGQKG VG QEDMP+T EG+ PD+++NPHA+PSRMT+
Sbjct: 351 AKVSVRDERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTV 410
Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
G ++E + GK + G+ D TPFT D I L G++ G E MY+G +G ++ A
Sbjct: 411 GHVLEMLGGKAGSLDGRSVDGTPFTGEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEA 470
Query: 694 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 753
IF+G +Y +L HMV +K+H+R +GPVQ+LTRQP EGR+R+GGLR GEMERD +I HGA
Sbjct: 471 EIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGA 530
Query: 754 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 813
+ LKERL D SD +HVC +CG+ A+ N ++ C C+ +TD+ + + YA KLL
Sbjct: 531 AMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLL 590
Query: 814 QELMAMAIAPRMLTKE 829
E+ A+ IAPR+ +E
Sbjct: 591 DEMKALGIAPRLELEE 606
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 264/616 (42%), Positives = 379/616 (61%), Gaps = 20/616 (3%)
Query: 218 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV-VRDIRLKELRIYTDYGRCSRP 276
K++VNG VG H +PE L + +R RRR +V+ V V VRD R E+ + D GR RP
Sbjct: 7 AKVYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRD-RTGEVIVNADAGRARRP 65
Query: 277 LFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 336
L +VE ++ + ++ A++ D + DLV G +E+ID EEEE ++ +
Sbjct: 66 LLVVENGEPVVTQEEVEAVKNG----DIDFEDLVEAGKVEFIDAEEEEDILVGVE----- 116
Query: 337 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 396
EE +TH EI P LI G+ A +IP+P+HN SPR T + M KQ++G+ N
Sbjct: 117 ------EEELTTDHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAAN 170
Query: 397 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 456
Y+ R DT ++L+YPQK +V T+ E + + PAG N +VA+ Y G+N ED+++MN+
Sbjct: 171 YRIRPDTRQHLLHYPQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKG 230
Query: 457 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 516
S++R RS FFR+Y EE++ ++ F P +Y LDDDGL P T+
Sbjct: 231 SVERALSRSHFFRTYEGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETK 290
Query: 517 VSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 573
V V++GKT+P + + E G S RR+ S+++R E G+VD V L DG +
Sbjct: 291 VDDSSVLLGKTSPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKL 350
Query: 574 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 633
KV VR RIP++GDKF+SRHGQKG VG QEDMP+T EG+ PD+++NPHA+PSRMT+
Sbjct: 351 AKVSVRDERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTV 410
Query: 634 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 693
G ++E + GK + G+ D TPFT D I L G++ G E MY+G +G ++ A
Sbjct: 411 GHVLEMLGGKAGSLDGRSVDGTPFTGEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEA 470
Query: 694 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 753
IF+G +Y +L HMV +K+H+R +GPVQ+LTRQP EGR+R+GGLR GEMERD +I HGA
Sbjct: 471 EIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGA 530
Query: 754 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 813
+ LKERL D SD +HVC +CG+ A+ N ++ C C+ +TD+ + + YA KLL
Sbjct: 531 AMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLL 590
Query: 814 QELMAMAIAPRMLTKE 829
E+ A+ IAPR+ +E
Sbjct: 591 DEMKALGIAPRLELEE 606
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
Length = 1193
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 319/871 (36%), Positives = 470/871 (53%), Gaps = 93/871 (10%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLC--------ALGRRAED--------------- 37
M PH+G E +KA G ++ +LLL +RA D
Sbjct: 355 MFPHLGVSSTHE-EKAILLGKMVRKLLLVNETSINANKFAQRANDETNKTNKTNKMYYTQ 413
Query: 38 -DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 96
DRD+Y NKR++ AG L LFRML+++ + ++K V + K IT+
Sbjct: 414 EDRDNYSNKRVETAGVLCFELFRMLYKRFIKSNINQLEK----RNRVEMDVISKNAFITT 469
Query: 97 GLKYSLATGNWGQANAAGTRAGVSQV-LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 155
GL +S +TGNWG R GV+Q+ N++++ + S+LRR P+G+EGK K RQ+H
Sbjct: 470 GLHFSFSTGNWGVQKNNYIRTGVAQIPQNKVSFGAFFSYLRRFVIPMGKEGKNTKIRQIH 529
Query: 156 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE--EWGTENFEEIS--- 210
S CP+ETPEGQ G+ N +++ +++ +++ I E +E ++ EIS
Sbjct: 530 PSSIFFACPSETPEGQFVGITLNFSMLAEVSIRTSSVVIKEIIEASHQAFKHVHEISLEE 589
Query: 211 -PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 269
+ + + IFVNG G+ P+ L+ +R L+ + + +V V LKE+ I +D
Sbjct: 590 NKQFLSKLSIIFVNGGICGLTSKPQQLLSDVRDLKLKHCLKYDVSAVFIPELKEVHISSD 649
Query: 270 YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL---VAKGFIEYIDTEEEETT 326
GR RP ++ LQ ++ + W+ + G + Y D E E +
Sbjct: 650 AGRFIRP---------------VLNLQSIKTNGNVMWNSFQNCLENGHVVYKDAYEIEQS 694
Query: 327 MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 386
I++ + DL + Y Y EIH S +LGV A+ IPF +H QSPR YQS+M
Sbjct: 695 QIAINLQDLSR--------YPTVYDSMEIHASCMLGVMAAQIPFAEHTQSPRLCYQSSMA 746
Query: 387 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 446
KQA+G + ++ + D V+ Y Q+PLVTT+ E F P G+NA+VA+A Y+G+N
Sbjct: 747 KQAIG-NIPSHHVKSDNTTRVMDYVQRPLVTTQIAEMNRFNDFPNGLNAMVAVAIYTGFN 805
Query: 447 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 506
QEDS+I+N++SIDRG F + +++ EE+K+G V E P S R +Y L+
Sbjct: 806 QEDSIILNKASIDRGMFHVVTYKTIIVEERKIG--VNEKICMPVAS---VRRMNNYSLLE 860
Query: 507 DD------GLAPPGTRVSGEDVIIGKT-TPISQDEAQGQASRYTRRDHSISLRHSETGMV 559
D+ G+ + V DV++GK T IS+D + + DHS + SE G V
Sbjct: 861 DNPESPYFGVVKVKSFVKRNDVLVGKVITKISKDGTRQET------DHSTIVSISEEGKV 914
Query: 560 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 619
D+++ T+ G+ K+ + + P+IGDKF S QKGTVGM + DMP+ +G PD
Sbjct: 915 DRIIRTSKK-GILMFKIVIAQQKRPEIGDKFCSAMAQKGTVGMILEEVDMPFMEDGSIPD 973
Query: 620 IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE-GDATPFTDVTVDN-------ISKALHK 671
+I+NPH +PSRMTI Q++ IMGK + GDA+PF + +++ + K L +
Sbjct: 974 MIINPHCLPSRMTINQIMASIMGKTCCAKNETFGDASPFQESSLEKPQDKIHALCKELEE 1033
Query: 672 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ--ILTRQPA 729
CGY G ETM G G++L A IF GP YY RL HMV DKI SR + +TRQP
Sbjct: 1034 CGYNYNGTETMMCGWNGKKLRAEIFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQPL 1093
Query: 730 EGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSF 789
GR+ +GGLR GEME+DCM+ HG S FL E++FDQSD + +++C C +N F
Sbjct: 1094 NGRANEGGLRIGEMEKDCMLVHGISKFLHEKMFDQSDKFIINLCVPCKSYFKVVKTQNGF 1153
Query: 790 ECRGCKNKTDIVQVHIPYACKLLFQELMAMA 820
C GC N DIV+ + P+A KL FQEL AM
Sbjct: 1154 FCSGC-NGIDIVKFNCPFAAKLFFQELTAMG 1183
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 323/845 (38%), Positives = 457/845 (54%), Gaps = 70/845 (8%)
Query: 14 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 73
KKA + GY++ LL G+R ++RD + NKR++LAG LL R+ R + +
Sbjct: 313 KKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAM 372
Query: 74 QKCVDNGKDVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYAST 131
QK + D+ ++ + A IT+GL + +TG W R +GV L R T
Sbjct: 373 QKQLSGDGDLKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRANPLQT 432
Query: 132 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 191
L LRR + GK+ R H S WG +C TP+G+ CGLVKN++L+ ++
Sbjct: 433 LIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVST-QGL 491
Query: 192 YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 251
++E L G E + + K+ +NG WVG+ D E V L+ RR+ ++
Sbjct: 492 ESVVEMLFTCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKSRRRQSELPL 551
Query: 252 EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVA 311
E+ + RD E+RI+TD GR RPL +VE L +++ P + L+
Sbjct: 552 EMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKL----------KQDKPTQYPFKHLLD 601
Query: 312 KGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFP 371
+G +E I EEEE + I L++ YTHCE+ S +LGV +I+PF
Sbjct: 602 QGILELIGIEEEEDCTTAWGIKQLLKE--------PKNYTHCELDLSFLLGVSCAIVPFA 653
Query: 372 DHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 430
+H+ R YQS +QA+G TN R DTL+ L+YPQKPL T A E L L
Sbjct: 654 NHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLF 713
Query: 431 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--------EKKMGTLV 482
G NAIVA+ + GYNQEDS++MN++S++RG FRS RSY+ E KKM LV
Sbjct: 714 NGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEKRKKMDELV 773
Query: 483 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRY 542
+ FG+ + G D L+DDG G +S D++IG+ T
Sbjct: 774 Q--FGKTYS------KIGKVDSLEDDGFPFIGANMSTGDIVIGRCTE------------- 812
Query: 543 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 602
+ DHSI L+H+E G+V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G
Sbjct: 813 SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGY 872
Query: 603 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM------------GKVAAHMGK 650
Q++ P+T++GI PDI++NPHA PSR T GQL+E + G AA+
Sbjct: 873 LEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKL 932
Query: 651 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 710
ATPF+ V I++ LH+ G+ G E +YNG +G + ++IF+GPT+YQRL HM +
Sbjct: 933 TRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSE 992
Query: 711 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 770
+K+ R GPV LTRQP R R GG+RFGEMERDC+IAHGAS L ERLF SD+ ++
Sbjct: 993 NKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQM 1052
Query: 771 HVCEHCGLIA-------IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 823
H+C C A + K CR C + +V+V++PY KLL QEL +M I
Sbjct: 1053 HICRKCKTYANVIERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITL 1112
Query: 824 RMLTK 828
TK
Sbjct: 1113 NFDTK 1117
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/626 (43%), Positives = 385/626 (61%), Gaps = 25/626 (3%)
Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
+ I+VNG VG PE LV +R RR+ ++ V + ++ I TD GR R
Sbjct: 7 REVNIYVNGKLVGTTDKPEELVNFIREKRRKGELPQYTTVAYNEESNDIHINTDAGRIVR 66
Query: 276 PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
PL +VE + + K I L++ E + DLV +G IEY+D EEEE I+++
Sbjct: 67 PLIVVENGKPKLTKEHIEKLKKGEIT----FSDLVKEGVIEYLDAEEEENAYIALS---- 118
Query: 336 VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
EE + +TH EI P ILG+ A + P+P+HN +PR T +AMGKQ++GI ++
Sbjct: 119 -------EEELTEKHTHLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMS 171
Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
N ++R+DT + L+YPQ P+V T+ E L F + PAG N +VAI Y GYN ED+++ N+
Sbjct: 172 NIKWRLDTRGHYLHYPQVPIVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNK 231
Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
S+IDRG RS FFR+Y E++ + F PD+ Y L++DG+ +
Sbjct: 232 SAIDRGLGRSTFFRTYDACERRYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVES 291
Query: 516 RVSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 572
V G DVI+GKT+P + + E Q + RRD S+ +RH E G +D+V+LT +G R
Sbjct: 292 HVKGGDVIVGKTSPPRFLEEHEITIQV-KPQRRDSSVVVRHGEEGYIDKVILTETKEGNR 350
Query: 573 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
VKV+VR +RIP++GDKF+SRHGQKG +G+T QED+P+T GI PDII+NPHAIPSRMT
Sbjct: 351 LVKVKVRDLRIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMT 410
Query: 633 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 692
+GQL+E + GKV A G+ D T F+ ++ KAL G++ G E MY+G TG++
Sbjct: 411 VGQLLEMLGGKVGALEGRRIDGTIFSGEKEWDLRKALEALGFKHHGKEVMYDGKTGKKFE 470
Query: 693 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 752
I++G YYQ+L H+V KIH+R RGPVQ+LTRQP EGR+R+GGLRFGEMERD +I HG
Sbjct: 471 VEIYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHG 530
Query: 753 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ------VHIP 806
A+ LKERL D+SD Y + +C CG AI + K+ C C ++ V IP
Sbjct: 531 AAMLLKERLMDESDPYDICICSKCGDFAILDYKRGLKYCPICGEIENLYSSKKIPFVRIP 590
Query: 807 YACKLLFQELMAMAIAPRMLTKEDTK 832
YA KLL EL +M I PR+ ++ +
Sbjct: 591 YAFKLLLDELKSMCILPRIKVRDKVE 616
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/611 (43%), Positives = 388/611 (63%), Gaps = 19/611 (3%)
Query: 219 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 278
++++NG VG H + E L +R LRR+ ++ +V VV E+RI TD GR RPL
Sbjct: 5 RVYINGALVGFHDNGEELANKIRELRRKGRISNQVNVVYYPDSNEVRINTDAGRARRPLI 64
Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
+V+ + L+ I +++ E DLV +G IEY+D EEEE +++ ++L
Sbjct: 65 VVKDGKPLVTPEHIEKIKKGELT----IEDLVRQGLIEYLDAEEEENAYVAVYEHELT-- 118
Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
PE +TH E+ PSLI+G+C IP+ +HN SPRNT +AM KQ++GI +N
Sbjct: 119 ---PE------HTHLELDPSLIVGICTGSIPYAEHNASPRNTMGAAMIKQSLGIPYSNLA 169
Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
+R DT +++ +PQ P+VTT + F + PAG N +VA+ Y GYN ED++IMN+ S+
Sbjct: 170 WRTDTRGHLMQHPQVPIVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSV 229
Query: 459 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG-SYDKLDDDGLAPPGTRV 517
+RG RS F+R+Y EE + ++ F P ++ G R +Y LD+DGL P T V
Sbjct: 230 ERGLGRSFFYRTYESEEMRYPGGQEDKFEIPG-ADISGFRGAEAYAHLDEDGLIFPETEV 288
Query: 518 SGEDVIIGKTTP--ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 575
+DV+IG+T+P ++ + S RR+ S+++R +E G+VD V L + G + K
Sbjct: 289 GPDDVLIGRTSPPRFLEEPTELGISPQKRRETSVTMRSNEKGVVDAVFLMQSEGGSKLAK 348
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
VRVR +RIP++GDKF+SRHGQKG VG+ +EDMP+T GI PD+I+NPHAIPSRMT+G
Sbjct: 349 VRVRDLRIPELGDKFASRHGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGH 408
Query: 636 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 695
++E I GKV + G+ D + F + +++ L K G+ G E MY+G TGRR I
Sbjct: 409 VLEMIGGKVGSLEGRRVDGSLFHGESEEDLRATLKKYGFSHTGKEVMYDGITGRRYLVDI 468
Query: 696 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 755
F+G YYQ+L HMV KIH+R RGPVQ+LTRQP EGR+R GGLRFGEMERD +I HGA+
Sbjct: 469 FVGVIYYQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLIGHGAAL 528
Query: 756 FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 815
LK+RL ++SD V VC +CG +A + ++N+ C C ++++I +V + YA KLL E
Sbjct: 529 LLKDRLLEESDKVEVWVCGNCGHVATYDYRRNTAYCHICDDESNIHKVEMSYAFKLLLDE 588
Query: 816 LMAMAIAPRML 826
L +M IAPR++
Sbjct: 589 LKSMMIAPRII 599
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1
Length = 1140
Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust.
Identities = 302/834 (36%), Positives = 460/834 (55%), Gaps = 58/834 (6%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+ PH+G ++ +++ + LL + D+RD Y +KR++ AG L LFR+
Sbjct: 354 LFPHLGITS-TRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRL 412
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 120
L++K + ++ + ++ ++ IT+G+ YS ++G WG R GVS
Sbjct: 413 LYKKFQKTCITQIR-----NRKPDISNFLRTSGITTGILYSFSSGYWGVQRNTYIRTGVS 467
Query: 121 QVLN-RLTYASTLSHLRRLNSPIGREGKLAKP---RQLHNSQWGMMCPAETPEGQACGLV 176
QV+N +++ + S LRR+ P ++GK AK RQ+H S ++CP ETPEG+ G V
Sbjct: 468 QVVNPKVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTV 527
Query: 177 KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 236
N+A+ +T G + I++ ++ +G + + + +NG G
Sbjct: 528 LNMAVFCQVTTGISTCEIMDQIDSFGVDLKCHCTIKDPNNCLLLLINGSPYGNGH----- 582
Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
+ RL D N + V R L + I++D GR RP+F ++K I
Sbjct: 583 ANVIHRLNFLNDTNISIVVNR--ALGVIEIFSDAGRFIRPIFDLDK----------ICNF 630
Query: 297 QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIH 356
+ E W + I YID E I++ + DL +P Y E+
Sbjct: 631 EGEIVPSFKW--FLDNQLIRYIDINEAAANSIAIELRDL---STNPNTRY----NLMELD 681
Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
P + G+ A IIPFPD QS RN + S+M KQA+G +V + + +T+++ L YPQKPLV
Sbjct: 682 PCGMFGIVAGIIPFPDRTQSARNCFYSSMVKQAIG-FVPCHNLKTETVSHTLNYPQKPLV 740
Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
TT E+ + P GINAIVAIACY+GYNQEDS+I+N+SSIDRG F ++ + ++ +EK
Sbjct: 741 TTSFAEYNQLNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFTAQEK 800
Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ 536
K G +++E P SN + +R +Y + DG+ RV DV+I K T ++++ +
Sbjct: 801 KNG-IIEERIEIP--SNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIKNKNQDE 857
Query: 537 GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 596
D S+ ++H E G VD+++ DG R VKV + +R P+IGDKF S Q
Sbjct: 858 KLV------DSSVIVQHGEEGYVDRIVDNV-IDGCRIVKVVIGQMRTPEIGDKFCSGMAQ 910
Query: 597 KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA----HMGKEG 652
KGT GM + QEDMP+T G+TPDII+NP+ IPSRMTI Q+I +MGK+ + G
Sbjct: 911 KGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQIISTVMGKLYTVNPNPRFRNG 970
Query: 653 DA-TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 711
++ ++ + + L G+ G E MY+G TG R+ + IF+GPTYY RLKHMV D
Sbjct: 971 NSFQENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQSTIFMGPTYYHRLKHMVKD 1030
Query: 712 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 771
K+H+R G V L RQP GRS+ GGLRFGEME+DC++ HGA+ FL ER+F SD +++
Sbjct: 1031 KMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQFLNERMFLNSDPFQID 1090
Query: 772 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 825
VC+ CG+++ S +C C ++ + +IPY+CK L QEL M I ++
Sbjct: 1091 VCKDCGMMS-----STSKKCHHC-GSINVKRCNIPYSCKNLLQELNGMGIKTKI 1138
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/623 (43%), Positives = 379/623 (60%), Gaps = 25/623 (4%)
Query: 216 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 275
+ ++VNG + +DPE LVK+LR RR ++ + + ++ I TD GR R
Sbjct: 3 KQANVYVNGKLIDTSKDPENLVKSLRIQRRSGKLSPNTSISFNEESNDIHISTDGGRAVR 62
Query: 276 PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 335
PL +VE + L ++ + + + LV G IE++D EEEE I+M +++
Sbjct: 63 PLVVVENGFSKLTNE----LLEKVNNNELTFEYLVKTGVIEFLDAEEEENARIAMYNDEI 118
Query: 336 VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 395
TH EI P +ILG+ A + P+P+HN +PR T +AMGKQ++GI +
Sbjct: 119 TFEN-----------THVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMA 167
Query: 396 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 455
N ++RMDT ++L+YPQ PLV T+ E L F + PAG N +VA+ Y GYN ED+ ++N+
Sbjct: 168 NIKWRMDTRGHLLHYPQVPLVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINK 227
Query: 456 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
+S++RG RS FFRSY EK+ + F P++ +Y L DDGL +
Sbjct: 228 ASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLES 287
Query: 516 RVSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 572
V DVI+GKT+P + + E Q ++ RRD S+++RH E G+VD V+L+ +G R
Sbjct: 288 EVRSGDVILGKTSPPRFLEEQEITLQ-TKSQRRDTSVTIRHGEEGVVDLVILSETKEGNR 346
Query: 573 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
KVRVR +R+P+ GDKF+SRHGQKG +G+ QED+P+T +G+ PD+I+NPHAIPSRMT
Sbjct: 347 LGKVRVRDLRVPEFGDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMT 406
Query: 633 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 692
IGQ++E I GKV + + D T F+ + AL G+ G ETMY+G TGR+L
Sbjct: 407 IGQVLEMIGGKVGSLECRRVDGTIFSGEGEWALRHALENYGFTHSGKETMYDGKTGRKLE 466
Query: 693 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 752
IF+G YYQ+L H+V KIH+R RGP+Q+LTRQP EGR+R+GGLRFGEMERD ++AHG
Sbjct: 467 CEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHG 526
Query: 753 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ------VHIP 806
A+ LKERL D+SD + +VC CG IAI + K+ C C DI V I
Sbjct: 527 AALLLKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIA 586
Query: 807 YACKLLFQELMAMAIAPRMLTKE 829
YA KLL EL +M I P++ K+
Sbjct: 587 YAFKLLLDELKSMGIDPKLKLKD 609
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust.
Identities = 270/663 (40%), Positives = 379/663 (57%), Gaps = 39/663 (5%)
Query: 173 CGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWV 227
CGLVKN ALM ++T + P+L G ++ EE++ A + +NG +
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSR---NAYLVLLNGQII 1026
Query: 228 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 287
GIH P+ V TLR++RR + V + ++ + + + D GR RP+ IV+ QR +
Sbjct: 1027 GIHNSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRL 1086
Query: 288 KKRDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 345
+ I E +DG + D + +G IEY+D EE + ++ E A
Sbjct: 1087 TQEHI------EDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWR-----------EAA 1129
Query: 346 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 405
TH EI P +LG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL
Sbjct: 1130 IQPWTTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLL 1189
Query: 406 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 465
Y+L + Q+PL TR ++ L++ +LPAG NA VA+ YSGY+ ED+++MN++S+DRGF R
Sbjct: 1190 YLLVHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRC 1249
Query: 466 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 525
+ + KK G + P ++ +R Y LD DG+A PG +++
Sbjct: 1250 IVLKKQVTSIKKHGNDTSDRIFPPTPND---LRQPKYGLLDSDGIAKPGELAQKGQILVN 1306
Query: 526 KTTPISQDEAQGQASRY---TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 582
K +P++ +A + + ++ +D+VLLT+ D +K+ +RS R
Sbjct: 1307 KYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTR 1366
Query: 583 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 642
P++GDKFSSRHGQKG G+ QEDMP++ GI PDII+NPH PSRMTIG++IE + G
Sbjct: 1367 RPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAG 1426
Query: 643 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 702
K GK G T F V+NISK L G+ G + + +G TG L IF GP +Y
Sbjct: 1427 KAGVLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFY 1486
Query: 703 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLF 762
Q+LKHMV DK+H+R RGP LTRQP EGR+R GGLR GEMERDC+I +GAS + ERL
Sbjct: 1487 QKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLM 1546
Query: 763 DQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIA 822
SD + V+ C++CG + C+ CK+ DI + IPYACKLLFQEL AM I
Sbjct: 1547 ISSDRFTVYACKNCGFLGYEGY------CQYCKSSVDISTIQIPYACKLLFQELQAMNIV 1600
Query: 823 PRM 825
PR+
Sbjct: 1601 PRL 1603
Score = 133 bits (334), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 106/176 (60%), Gaps = 3/176 (1%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L HV + K Y +I R+++ + + DD+D+YGNKR++L+G L+ LF
Sbjct: 331 VLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFED 390
Query: 61 LFRKLTRDVRAYVQKCV---DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRA 117
F+K +++ V + + + ++++L I+ TIT+G +++++G W R+
Sbjct: 391 CFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERS 450
Query: 118 GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 173
GVSQVL+RL+Y S + + R+ S + K+A PR L SQWGM+CP++TPEG+AC
Sbjct: 451 GVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust.
Identities = 292/856 (34%), Positives = 428/856 (50%), Gaps = 92/856 (10%)
Query: 16 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 75
A + G+++ R+ A G DRD NKR+D GPL+ L L ++ V+ +V+
Sbjct: 405 AEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLLDGLLKQY---VKLFVKS 461
Query: 76 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG---QANAAGTRAGVSQVLNRLTYASTL 132
+ +T+ L ATGNW + R GVSQVL+ Y + +
Sbjct: 462 AGCQKNLCPYTVLQNSMVMTNSLHMCFATGNWTVKRLGPPSYVRVGVSQVLSNNNYGARV 521
Query: 133 SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 192
SHLRR+ + GK + RQLH+S +G +CP ETPEG+ G+V N+A ++ +
Sbjct: 522 SHLRRIMHAVSFRGKNIRMRQLHSSHYGFLCPYETPEGEKVGIVLNMAEGAGFSLETPRE 581
Query: 193 PILEFLE-EWGTENFEEISPAVIPQA-----TKIFVNGCWVGIHRDPEMLVKTLRRLRRR 246
+L + G F E +PA + + + V+G G+ DP
Sbjct: 582 VVLATVRLGKGLPGFFEGAPARLAWSGAAGSASVDVDGVLCGVTGDP------------- 628
Query: 247 VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK---RDIIALQQRESPED 303
VG VR+ RL + + + R + ++ Q +++ + I +SP
Sbjct: 629 ------VGFVREARLCLPGVSVVWKKVEREIHLLGCQGRFVRRVLDPEGIRGSGYDSPPA 682
Query: 304 GGWHDL-VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILG 362
D+ + + + +L L E YAD ++
Sbjct: 683 PEERDIEMDPAPSSSPSDSLPCPPGVYVCAQELSVCSLGDGE-YADPPAS-----EILTD 736
Query: 363 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 422
+S+IPF DH QSPRN YQS MGKQA+G N R D + L YPQK LV +R+++
Sbjct: 737 AMSSVIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLDYPQKSLVDSRSVK 796
Query: 423 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 482
L F ++ G +VAI G+NQEDSV++N SS+DRG F + +R+ +K+
Sbjct: 797 RLGFDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYRTVSCADKRRTKYD 856
Query: 483 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT------RVSGE---------------- 520
E PD + R YD L DDG+ P RV G+
Sbjct: 857 SEVVCLPDWG--LRNREWDYDLLGDDGVIDPSCAGALARRVEGKRKAAKRPAGQRTGGGP 914
Query: 521 ------------DVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 568
V++GK + + G RRD S++++ SE G +D+V + ++
Sbjct: 915 AGLCDALWIPAGTVLVGKVS-----HSLGPGGNPMRRDVSLTVKQSEEGYLDRVTVDVDS 969
Query: 569 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 628
DG + VKVR+R+ R P++GDKF+S QKGT G TQEDMP+ +G+ PD+I+NPHA P
Sbjct: 970 DGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKDGVVPDLIINPHAFP 1029
Query: 629 SRMTIGQLIECIMGKVAAHMGKEGDATPFT-DVTVDNISKALHKCGYQMRGFETMYNGHT 687
SRMT+ L++ G A +GK DAT F + V +I++A + G +++G T
Sbjct: 1030 SRMTVNYLLQMCFGTAACKLGKTYDATAFEREDVVRDIAEAAKEAGIDCWD-SVLHSGST 1088
Query: 688 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
GRRL IF+ P YQRLKHMV K+HSR GP LTRQP GRSR+GG++ GEME+ C
Sbjct: 1089 GRRLPTKIFMAPCPYQRLKHMVSGKMHSRTHGPTDALTRQPVAGRSREGGIKIGEMEQWC 1148
Query: 748 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE-CRGCKNKTDIVQVHIP 806
I+HGAS LKE ++D SD Y V VC+ CG I+ + FE CR C + TD+ V +P
Sbjct: 1149 KISHGASESLKESVYDMSDKYEVPVCKECGRIS------DHFEYCRMC-DATDMSLVKLP 1201
Query: 807 YACKLLFQELMAMAIA 822
Y K+LFQEL ++ I+
Sbjct: 1202 YTTKILFQELRSIGIS 1217
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 272/883 (30%), Positives = 425/883 (48%), Gaps = 91/883 (10%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+G +K + G +IH++LL + DRD Y KR+ +G L F+
Sbjct: 372 LLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKA 431
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQANAAGTRA 117
+F + + ++ K++ Q A + + I +L+ + N + ++
Sbjct: 432 IFNT------SVIAPIINGFKELLKQTAFEDLTQRNIIEAFSAALSKNSASDLNRSMEQS 485
Query: 118 GVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKLAKPRQL 154
+S Q L R +T+S LR +N+ + + R++
Sbjct: 486 IISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERADMMRRV 545
Query: 155 HNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENFEEISPA 212
H S G +C A++ + G+ G+ K LA+ + T G L + + ++S
Sbjct: 546 HASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNK 605
Query: 213 VIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTD 269
I + ++F+NG W+G + L + R LRR V+ + D + E+ + D
Sbjct: 606 DIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLD 665
Query: 270 YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------------- 306
GR +RPL IV+ I+K + + E+ + G W
Sbjct: 666 VGRLTRPLLIVDNN---IEKYNKACYKAAEARKKGDKDWEKHKIPFIQNTRFTSQMAKDI 722
Query: 307 -------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
DLVA+G E+I EE E +++ +I +L R H + +TH ++ P
Sbjct: 723 LAGTLTLEDLVAQGICEFITPEEAENCLVAFSITEL---RKHKHDV-TRRFTHVDV-PQA 777
Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y + PLV T
Sbjct: 778 ILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTI 837
Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+E+ ++
Sbjct: 838 AHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YREEKVELE 890
Query: 480 TLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 538
+ + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I + + +
Sbjct: 891 SDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRGE--KDE 946
Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
++Y D S+ E +VD V+ + F +R+R R IGDK SSR G KG
Sbjct: 947 LNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKG 1004
Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
+ DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G D T F
Sbjct: 1005 IAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL 1064
Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDDKIHSRG 717
+ V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD+
Sbjct: 1065 PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVAS 1124
Query: 718 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
GP LT QP +G+ GGLR GEME + A GA + E+ D SD ++C +CG
Sbjct: 1125 YGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCG 1184
Query: 778 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 820
AI N ++C C + DI V ++FQ M A
Sbjct: 1185 EPAIYNASHPIYKCMNCDVQADISMVD-SRRSSIVFQHEMRAA 1226
>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
Length = 1242
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 275/896 (30%), Positives = 429/896 (47%), Gaps = 98/896 (10%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+G +K + G +IH++LL + DRD Y KR+ +G L F+
Sbjct: 372 LLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKA 431
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT---ITSGLKYSLATGNWGQANAAGTRA 117
+F + + ++ K++ Q A + T I +L+ N + ++
Sbjct: 432 IFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQS 485
Query: 118 GVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKLAKPRQL 154
+S Q L R +T+S LR +N+ + + R++
Sbjct: 486 IISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERADMMRRV 545
Query: 155 HNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENFEEISPA 212
H S G +C A++ + G+ G+ K LA+ + T G L + + ++S
Sbjct: 546 HASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNK 605
Query: 213 VIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTD 269
I + ++F+NG W+G + L + R LRR V+ + D + E+ + D
Sbjct: 606 DIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLD 665
Query: 270 YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG--W--------------------- 306
GR +RPL IV+ I+K + + E+ + G W
Sbjct: 666 VGRLTRPLLIVDNN---IEKYNEACYKAAEARKKGNKDWEKHKISFVQNTRFTSQMAKAI 722
Query: 307 -------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
DLVA+G E+I EE E +++ +I +L R H + +TH ++ P
Sbjct: 723 LAGTLTLEDLVAQGICEFITPEEAENCLVAFSITEL---RKHKHDV-TRRFTHVDV-PQS 777
Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y + PLV T
Sbjct: 778 ILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTI 837
Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+E+ ++
Sbjct: 838 AHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YREEKVELE 890
Query: 480 TLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 538
+ + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I + + +
Sbjct: 891 SDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRGE--KDE 946
Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
++Y D S+ E +VD V+ + F +R+R R IGDK SSR G KG
Sbjct: 947 LNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKG 1004
Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
+ DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G D T F
Sbjct: 1005 IAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL 1064
Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDDKIHSRG 717
+ V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD+
Sbjct: 1065 PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVAS 1124
Query: 718 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
GP LT QP +G+ GGLR GEME + A GA + E+ D SD ++C +CG
Sbjct: 1125 YGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCG 1184
Query: 778 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA-------IAPRML 826
AI N ++C C + DI V ++FQ M A ++PR+
Sbjct: 1185 EPAIYNASHPIYKCMNCDVQADISMVD-SRRSSIVFQHEMRAANVNITSVLSPRVF 1239
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 273/883 (30%), Positives = 424/883 (48%), Gaps = 91/883 (10%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+G +K + G +IH++LL + DRD Y KR+ +G L F+
Sbjct: 372 LLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKA 431
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT---ITSGLKYSLATGNWGQANAAGTRA 117
+F + + ++ K++ Q A + T I +L+ N + ++
Sbjct: 432 IFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQS 485
Query: 118 GVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKLAKPRQL 154
+S Q L R +T+S LR +N+ + + R++
Sbjct: 486 IISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMMRRV 545
Query: 155 HNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENFEEISPA 212
H S G +C A++ + G+ G+ K LA+ + T G L + + ++S
Sbjct: 546 HASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNK 605
Query: 213 VIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTD 269
I + ++F+NG W+G + L + R LRR V+ + D + E+ + D
Sbjct: 606 DIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLD 665
Query: 270 YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------------- 306
GR +RPL IV+ I+K + + E+ + G W
Sbjct: 666 VGRLTRPLLIVDNN---IEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTSQMAKDI 722
Query: 307 -------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
DLVA+G E+I EE E +++ +I ++ R H + +TH ++ P
Sbjct: 723 LAGTLTLEDLVAQGICEFITPEEAENCLVAFSI---IELRKHKHDV-TRRFTHVDV-PQA 777
Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y + PLV T
Sbjct: 778 ILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTI 837
Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+E+ ++
Sbjct: 838 AHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YREEKVELE 890
Query: 480 TLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 538
+ + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I + + +
Sbjct: 891 SDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRGE--KDE 946
Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
++Y D S+ E +VD V+ + F +R+R R IGDK SSR G KG
Sbjct: 947 LNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKG 1004
Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
+ DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G D T F
Sbjct: 1005 IAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL 1064
Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDDKIHSRG 717
+ V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD+
Sbjct: 1065 PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVAS 1124
Query: 718 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
GP LT QP +G+ GGLR GEME + A GA + E+ D SD +VC +CG
Sbjct: 1125 YGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYVCRNCG 1184
Query: 778 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 820
AI N ++C C + DI V ++FQ M A
Sbjct: 1185 EPAIYNASHPIYKCMNCDVQADIGMVD-SRRSSIVFQHEMRAA 1226
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 273/883 (30%), Positives = 424/883 (48%), Gaps = 91/883 (10%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+G +K + G +IH++LL + DRD Y KR+ +G L F+
Sbjct: 372 LLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKA 431
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT---ITSGLKYSLATGNWGQANAAGTRA 117
+F + + ++ K++ Q A + T I +L+ N + ++
Sbjct: 432 IFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQS 485
Query: 118 GVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKLAKPRQL 154
+S Q L R +T+S LR +N+ + + R++
Sbjct: 486 IISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMMRRV 545
Query: 155 HNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENFEEISPA 212
H S G +C A++ + G+ G+ K LA+ + T G L + + ++S
Sbjct: 546 HASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNK 605
Query: 213 VIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTD 269
I + ++F+NG W+G + L + R LRR V+ + D + E+ + D
Sbjct: 606 DIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLD 665
Query: 270 YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------------- 306
GR +RPL IV+ I+K + + E+ + G W
Sbjct: 666 VGRLTRPLLIVDNN---IEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTSQMAKDI 722
Query: 307 -------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
DLVA+G E+I EE E +++ +I ++ R H + +TH ++ P
Sbjct: 723 LAGTLTLEDLVAQGICEFITPEEAENCLVAFSI---IELRKHKHDV-TRRFTHVDV-PQA 777
Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y + PLV T
Sbjct: 778 ILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTI 837
Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+E+ ++
Sbjct: 838 AHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YREEKVELE 890
Query: 480 TLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 538
+ + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I + + +
Sbjct: 891 SDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRGE--KDE 946
Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
++Y D S+ E +VD V+ + F +R+R R IGDK SSR G KG
Sbjct: 947 LNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKG 1004
Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
+ DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G D T F
Sbjct: 1005 IAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL 1064
Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDDKIHSRG 717
+ V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD+
Sbjct: 1065 PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVAS 1124
Query: 718 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
GP LT QP +G+ GGLR GEME + A GA + E+ D SD +VC +CG
Sbjct: 1125 YGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYVCRNCG 1184
Query: 778 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 820
AI N ++C C + DI V ++FQ M A
Sbjct: 1185 EPAIYNASHPIYKCMNCDVQADIGMVD-SRRSSIVFQHEMRAA 1226
>sp|P42487|RPB2_ASFB7 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(strain Badajoz 1971 Vero-adapted) GN=Ba71V-053 PE=3 SV=1
Length = 1242
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 271/883 (30%), Positives = 423/883 (47%), Gaps = 91/883 (10%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+LPH+G +K + G +IH++LL + DRD Y KR+ +G L F+
Sbjct: 372 LLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKA 431
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT---ITSGLKYSLATGNWGQANAAGTRA 117
+F + + ++ K++ Q A + T I +L+ N + ++
Sbjct: 432 IFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQS 485
Query: 118 GVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKLAKPRQL 154
+S Q L R +T+S LR +N+ + + R++
Sbjct: 486 IISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMMRRV 545
Query: 155 HNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENFEEISPA 212
H S G +C A++ + G+ G+ K LA+ + T G L + + ++S
Sbjct: 546 HASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNK 605
Query: 213 VIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTD 269
I + ++F+NG W+G + L + R RR V+ + D + E+ + D
Sbjct: 606 DIVRKGLARVFINGEWIGCCTNAFELAQRYRMFRREGKIVHPHTTIYWDSMVDEVEFWLD 665
Query: 270 YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------------- 306
GR +RPL IV+ I+K + + E+ + G W
Sbjct: 666 VGRLTRPLLIVDNN---IEKYNQACYKAAEARKKGDKDWEKHKIPFIQNTRFTSQMAKDI 722
Query: 307 -------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 359
DLVA+G E+I EE E +++ +I ++ R H + +TH ++ P
Sbjct: 723 LAGTLTLEDLVAQGICEFITPEEAENCLVAFSI---IELRKHKHDV-TRRFTHVDV-PQA 777
Query: 360 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 419
ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y + PLV T
Sbjct: 778 ILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTI 837
Query: 420 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 479
A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+E+ ++
Sbjct: 838 AHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YREEKVELE 890
Query: 480 TLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 538
+ + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I + + +
Sbjct: 891 SDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRGE--KDE 946
Query: 539 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 598
++Y D S+ E +VD V+ + F +R+R R IGDK SSR G KG
Sbjct: 947 LNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKG 1004
Query: 599 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 658
+ DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G D T F
Sbjct: 1005 IAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL 1064
Query: 659 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDDKIHSRG 717
+ V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD+
Sbjct: 1065 PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVAS 1124
Query: 718 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 777
GP LT QP +G+ GGLR GEME + A GA + E+ D SD ++C +CG
Sbjct: 1125 YGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCG 1184
Query: 778 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 820
AI N ++C C + DI V ++FQ M A
Sbjct: 1185 EPAIYNASHPIYKCMNCDVQADIGMVD-SRRSSIVFQHEMRAA 1226
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B
PE=2 SV=1
Length = 1136
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 270/860 (31%), Positives = 393/860 (45%), Gaps = 113/860 (13%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR-A 71
T+K Y + +L A G ED+ D N+ + G L + ++ A
Sbjct: 340 TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIA 399
Query: 72 YVQKCVDNGKDVNLQFAIKAKT----ITSGLKYSLATGNWGQANAAGT--RAGVSQVLNR 125
+ +K +N ++ T +T +Y ATGN G +G+ V ++
Sbjct: 400 FDKKAQKTNVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADK 459
Query: 126 LTYASTLSHLRRLNSPIGREGKLAK-----PRQLHNSQWGMMCPAETPEGQACGLVKNLA 180
L + LSH R ++ R AK R+L WG +CP TP+G+ CGL+ +L
Sbjct: 460 LNFIRYLSHFRCVH----RGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLT 515
Query: 181 LMVYIT---VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEM-- 235
+ + V +A+ P L L G + + + ++G VG D E+
Sbjct: 516 AVCEVVTQFVYTASIPAL--LCNLGVTPIDGAPHRSYSECYPVLLDGVMVG-WVDKELAP 572
Query: 236 -LVKTLRRLR----RRVDVNTEVGVV----RDIRLKELRIYTDYGRCSRPLFIVEKQRLL 286
+ +LR + +R+ TEV ++ + L ++T R RP+ Q L
Sbjct: 573 GIADSLRHFKVLREKRIPPWTEVVLIPMTGKPSLYPGLFLFTTPCRLVRPV-----QNLE 627
Query: 287 IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 346
+ K ++I G +E I + + +E +
Sbjct: 628 LGKEELI-------------------GTMEQI----------------FMNVAIFEDEVF 652
Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D Y
Sbjct: 653 AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 712
Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 713 RLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG- 771
Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVI 523
Y+ E + +K+ D S GM+ G KLDDDGL G ++
Sbjct: 772 --SVYKSEFIDLSEKIKQG----DSSLVFGMKPGDPRILQKLDDDGLPFIGAKLQ----- 820
Query: 524 IGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRS 580
D + T + + E +VD + + +N G + V + +R
Sbjct: 821 -------YGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRV 873
Query: 581 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 640
R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE +
Sbjct: 874 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESM 933
Query: 641 MGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
GK AA G DATPF + ++ + L GY G E +Y+G +G L A IF
Sbjct: 934 AGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIF 993
Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S F
Sbjct: 994 IGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFF 1053
Query: 757 -LKERLFDQSDAYRVHVCEHCGLI----------AIANLKKNSFECRGCKNKTDIVQVHI 805
L +RLF+ SD HVC CG + + + ++ + C C I V +
Sbjct: 1054 LLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCNRSDTIDTVSV 1113
Query: 806 PYACKLLFQELMAMAIAPRM 825
PY + EL AM I ++
Sbjct: 1114 PYVFRYFVAELAAMNIKVKL 1133
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b
PE=2 SV=2
Length = 1135
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 270/864 (31%), Positives = 401/864 (46%), Gaps = 122/864 (14%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR--------- 63
T K Y + +L A G +D+ D N+ ++ P G LF M +
Sbjct: 340 TDKFYLLCLMTRKLFALARGECMDDNPDSLVNQ--EVLSP--GQLFLMFLKEKMENWLVS 395
Query: 64 -KLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG--TRAGVS 120
K+ D RA N +++ F++ + +T +Y LATGN G +G+
Sbjct: 396 IKIVLDKRAQKANVSINNENLMKIFSMGTE-LTRPFEYLLATGNLRSKTGLGFLQDSGLC 454
Query: 121 QVLNRLTYASTLSHLRRLNSPIGREGKLAK-----PRQLHNSQWGMMCPAETPEGQACGL 175
V ++L + LSH R ++ R AK R+L WG +CP TP+G CGL
Sbjct: 455 VVADKLNFLRYLSHFRCVH----RGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGL 510
Query: 176 VKNLALMVYIT---VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG-IHR 231
+ +L + + V +A+ P L L G + + ++G VG + +
Sbjct: 511 LNHLTAVCEVVTKFVYTASIPAL--LCGLGVTPVDTAPCRPYSDCYPVLLDGVMVGWVDK 568
Query: 232 D--PEMLVKTLRRLR----RRVDVNTEVGVV----RDIRLKELRIYTDYGRCSRPLFIVE 281
D PE + TLRR + +R+ EV ++ + L ++T R RP+
Sbjct: 569 DLAPE-VADTLRRFKVLREKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPV---- 623
Query: 282 KQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 341
Q L + + ++I TM + +N +
Sbjct: 624 -QNLELGREELIG-------------------------------TMEQLFMN----VAIF 647
Query: 342 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 401
+E + TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R
Sbjct: 648 EDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRS 707
Query: 402 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 461
D Y L PQ PLV + P G NAIVA+ Y+GY+ ED++I+N++S +RG
Sbjct: 708 DNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERG 767
Query: 462 FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 518
F ++S + + E F + + + G++ G KLDDDGL G ++
Sbjct: 768 FAHGSVYKSEFID-------LSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLE 820
Query: 519 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 575
D ++ + +G Y +++ + VD + + +N G + +
Sbjct: 821 YGDPYYSY---LNLNTGEGFVVYYKSKENCV---------VDNIKVCSNDMGSGKFKCIC 868
Query: 576 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 635
+ VR R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 869 ITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGM 928
Query: 636 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 691
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 929 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMEL 988
Query: 692 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 751
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 989 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAH 1048
Query: 752 GASHFLKERLFDQSDAYRVHVCEHCGLI----------AIANLKKNSFECRGCKNKTDIV 801
G S L +RLF+ SD H+C CG + + + ++ + C C I
Sbjct: 1049 GTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTID 1108
Query: 802 QVHIPYACKLLFQELMAMAIAPRM 825
V +PY + EL AM I ++
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKL 1132
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B
PE=1 SV=2
Length = 1135
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 267/859 (31%), Positives = 392/859 (45%), Gaps = 112/859 (13%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLT 66
T+K Y + +L A G ED+ D N+ + G L + ++ K+
Sbjct: 340 TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIA 399
Query: 67 RDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT--RAGVSQVLN 124
D +A + V D ++ +T +Y ATGN G +G+ V +
Sbjct: 400 FDKKAQ-KTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVAD 458
Query: 125 RLTYASTLSHLRRLNSPIGREGKLAK-----PRQLHNSQWGMMCPAETPEGQACGLVKNL 179
+L + LSH R ++ R AK R+L WG +CP TP+G+ CGL+ +L
Sbjct: 459 KLNFIRYLSHFRCVH----RGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHL 514
Query: 180 ALMVYIT---VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG-IHRD-PE 234
+ + V +A+ P L L G + + + ++G VG + +D
Sbjct: 515 TAVCEVVTQFVYTASIPAL--LCNLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAP 572
Query: 235 MLVKTLRRLR----RRVDVNTEVGVV----RDIRLKELRIYTDYGRCSRPLFIVEKQRLL 286
+ +LR + +R+ EV ++ + L ++T R RP+ Q L
Sbjct: 573 GIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPV-----QNLA 627
Query: 287 IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 346
+ K ++I G +E I + + +E +
Sbjct: 628 LGKEELI-------------------GTMEQI----------------FMNVAIFEDEVF 652
Query: 347 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 406
A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D Y
Sbjct: 653 AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 712
Query: 407 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 466
L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 713 RLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG- 771
Query: 467 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVI 523
Y+ E + +K+ D S G++ G KLDDDGL G ++
Sbjct: 772 --SVYKSEFIDLSEKIKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ----- 820
Query: 524 IGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRS 580
D + T + + E +VD + + +N G + V + +R
Sbjct: 821 -------YGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRV 873
Query: 581 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 640
R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE +
Sbjct: 874 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESM 933
Query: 641 MGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 696
GK AA G DATPF + ++ + L GY G E +Y+G +G L A IF
Sbjct: 934 AGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIF 993
Query: 697 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 756
+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S
Sbjct: 994 IGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFL 1053
Query: 757 LKERLFDQSDAYRVHVCEHCGLI----------AIANLKKNSFECRGCKNKTDIVQVHIP 806
L +RLF+ SD HVC CG + + + ++ + C C I V +P
Sbjct: 1054 LHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVP 1113
Query: 807 YACKLLFQELMAMAIAPRM 825
Y + EL AM I ++
Sbjct: 1114 YVFRYFVAELAAMNIKVKL 1132
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 362 bits (928), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 262/841 (31%), Positives = 393/841 (46%), Gaps = 81/841 (9%)
Query: 1 MLPHVGTGDFCETKKAYYFG---YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 57
+L H+G+ D E + A F ++ +L G A D+ D N+ + L G L G +
Sbjct: 354 VLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFLYGQI 413
Query: 58 FRMLFRKL-TRDVRAYVQKCVDNGKDVNLQ------------FAIKAKTITSGLKYSLAT 104
+ +L T RA ++ + V+ Q F + I L+Y L+T
Sbjct: 414 IKERLEELLTVSFRASLRDYLRRNPTVSFQSDTFLKDFPIAIFRRANENIGQSLEYFLST 473
Query: 105 GNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGM 161
GN + + +G + V +L + +SH R ++ + K R+L WG
Sbjct: 474 GNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGF 533
Query: 162 MCPAETPEGQACGLVKNLALMVYITVGSA-AYPILEFLEEWGTENFEEISPAVIPQATKI 220
+CP TP+G CGL+ +LA I S A I E G N IS A ++ +
Sbjct: 534 LCPVHTPDGSPCGLLNHLAHKCKIMTESVDASTISRLAFELGVVN---ISSAATSESVVV 590
Query: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
++G VG E K++ R VN E GV ++L+ + G L++
Sbjct: 591 MLDGRIVGWCTPEE--CKSIAETLRYWKVNGENGV--PLQLEIGYVPPSNGGSYPGLYMS 646
Query: 281 EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 340
+ +++ + LQ+ + ++ +E+ I+ T +++
Sbjct: 647 SQPARMVRPVKYLPLQKED-----------------FVGPQEQPYMSIACTEQEVI---- 685
Query: 341 HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
P ++ TH E P+ IL + A++ PF D NQSPRN YQ MGKQ MG T R
Sbjct: 686 -PGDS-----THVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHR 739
Query: 401 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
D Y L Q P+V F P G+NA+VA+ Y+GY+ +D++I+N+S+ +R
Sbjct: 740 TDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHER 799
Query: 461 GFFRSLFFRSYR-----DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
GF +++ + D + + + FG S +R + D LD+DGL G
Sbjct: 800 GFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNST---IRESTRDMLDNDGLPRVGR 856
Query: 516 RVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LR 572
+ DVI T +S D GQ H + SE V++V + +G L+
Sbjct: 857 LLREGDVICAWHT-VSAD-YNGQLVNRDGVTHYERYKDSEDAFVEEVRVIGADNGTEPLQ 914
Query: 573 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 632
V +++R R P IGDKFSSRHGQKG + + DMP++ GI PD+I+NPHA PSRMT
Sbjct: 915 TVSIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMT 974
Query: 633 IGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTG 688
IG +E + GK A G D+TPF + D L K GY G E +Y+G TG
Sbjct: 975 IGMFVESLAGKAGALHGLAQDSTPFKFDEQNTAGDYFGHQLMKAGYNYHGNEPLYSGITG 1034
Query: 689 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 748
A I++G YYQRL+HMV+DK R GPV T QP +GR + GG+R GEMERD +
Sbjct: 1035 EEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEMERDAL 1094
Query: 749 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSF----------ECRGCKNKT 798
+AHG S L++RL + SD + +C CG + F CR C +
Sbjct: 1095 LAHGTSFLLQDRLLNCSDYSKSWMCRQCGSFLSTQPTVSPFIGKRKAVSTVRCRNCAVRL 1154
Query: 799 D 799
D
Sbjct: 1155 D 1155
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPA2 PE=3 SV=2
Length = 1196
Score = 357 bits (915), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 256/812 (31%), Positives = 385/812 (47%), Gaps = 93/812 (11%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
+L H+G + T K+ ++I +L G D+ D ++ + L G L G + +
Sbjct: 352 VLVHLGDEN---TDKSNMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVKE 408
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQ---FAIKAKT-----ITSGLKYSLATGNWGQANA 112
+ ++++ +Q V+ G V+ + + + T I S L+Y L+TGN +
Sbjct: 409 KIEEYLQNIKLQIQADVNRGMPVDFKDRKYMTRVLTRINENIGSKLQYFLSTGNLVSQSG 468
Query: 113 AGTR--AGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPE 169
+ +G + V ++ + +SH R ++ + K R+L WG +CP TP+
Sbjct: 469 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPD 528
Query: 170 GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 228
G CGL+ + A I T S I L G ++ A P + ++G VG
Sbjct: 529 GSPCGLLNHFAHKCKISTTQSDVSKIPTLLYSLGVSPAAHVT-AAGPSLCCVQLDGKIVG 587
Query: 229 I--HRDPEMLVKTLR--RLRRRVD---VNTEVGVVRDIRLKE---LRIYTDYGRCSRPLF 278
H ++ TLR ++ + D ++ E+G V + + L ++ + R RP+
Sbjct: 588 WCSHEQGRIVADTLRYWKVEGKTDGLPLDLEIGYVPASKRGQYPGLYLFGGHSRMMRPV- 646
Query: 279 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 338
+ L + K+DI+ P + + D+
Sbjct: 647 ----RYLPLDKQDIVG------PFEQVYMDIAVT-------------------------- 670
Query: 339 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 398
PEE + +TH E P+ IL + A++ PF D NQSPRN YQ MGKQ MG
Sbjct: 671 ---PEEIQNNVHTHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALC 727
Query: 399 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 458
R D Y L Q P+V + P G NA+VA+ Y+GY+ +D++I+N+S+
Sbjct: 728 HRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSAD 787
Query: 459 DRGFFRSLFFRSYRDE---EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 515
+RGF +++ + + + G V + FG T +KLD+DGL G+
Sbjct: 788 ERGFSYGTVYKTEKIDLSLSRGRGDPVTQHFG----FGTDEWPKEWLEKLDEDGLPIIGS 843
Query: 516 RVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG----L 571
V D I D+ + T HS SE +++V L + L
Sbjct: 844 YVEEGDPICAYF-----DDTLNKTKIKTY--HS-----SEPAYIEEVTLIGDESNKFQEL 891
Query: 572 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 631
+++ ++ R R+PQIGDKFSSRHGQKG + DMP++ GI PD+I+NPHA PSRM
Sbjct: 892 QYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRM 951
Query: 632 TIGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHT 687
TIG +E + GK A G DATP+T D D L K GY G E MY+G T
Sbjct: 952 TIGMFVESLAGKAGALHGIAQDATPWTFSEEDTPADYFGDQLLKAGYNYHGNEPMYSGAT 1011
Query: 688 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 747
G L A I++G YYQRL+HMV+DK R GPV LT QP +GR R GG+R GEMERD
Sbjct: 1012 GEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDA 1071
Query: 748 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 779
+I HG S L++RL + SD + VC CG I
Sbjct: 1072 LIGHGTSFLLQDRLLNSSDYTQSAVCRECGSI 1103
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 353 bits (906), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 255/844 (30%), Positives = 392/844 (46%), Gaps = 89/844 (10%)
Query: 22 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 81
+I +L G+ D+ D + + LAG + G + + + +++V K ++ K
Sbjct: 333 MIQKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKK 392
Query: 82 -------DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTL 132
D + K I Y LATGN ++ + +G + ++L + +
Sbjct: 393 KSGDKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFI 452
Query: 133 SHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 191
SH R ++ K R+L WG CP TP+G CGL+ +L+ +TV +A
Sbjct: 453 SHFRSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQ 512
Query: 192 YPILE--------FLEEWGTENFEEISPAVIPQATKIFVNGCWVGI--HRDPEMLVKTLR 241
P ++ FL G + +S Q I ++G +G + E +VK LR
Sbjct: 513 DPTVQKAQTLLPSFLAAHGMLPIDMVS-VYQHQYLTITLDGRVLGKIEPKAGEEMVKMLR 571
Query: 242 RLRRRVDVNTEVGVVRDIRLKELR-IYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 300
LR + E + + + + + G+ S R + R ++ L ++
Sbjct: 572 YLR---SMGNEPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFM---RPVVNLTSGQN 625
Query: 301 PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 360
E I +E+ I++ P E TH E P+ +
Sbjct: 626 ---------------ELIGPQEQLYMEIAVV----------PHEVIKGVTTHIETSPTAM 660
Query: 361 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 420
+ A++ PF D+NQSPRN YQ M KQ MG + +Y FR D Y + QKP+V T+
Sbjct: 661 FSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKN 720
Query: 421 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR-SLFFRSYRDEEKKMG 479
P G NA++A+ +GY+ ED++I+N+S+ +RGF S++ Y D ++ +
Sbjct: 721 QFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLS 780
Query: 480 TLVKED--FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 537
++ FGRP NT+ + +D DGL G + + P
Sbjct: 781 RFEQKKTFFGRP---NTVVDELDKF--IDTDGLPFVGRLIKPGEPYYTYIRP-------- 827
Query: 538 QASRYTRRDHSISLRHSETGMVDQVLLTTNADG-------LRFVKVRVRSVRIPQIGDKF 590
R +D+ + E ++ V + +G + + V++R R P IGDKF
Sbjct: 828 SDGRQVTKDY----KGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKF 883
Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
SSRHGQKG + + + +MP+T G+ PD+I+NP+A PSRMTIG L+E + GK A GK
Sbjct: 884 SSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGK 943
Query: 651 EGDATPF----TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
DAT F + +D + L K G+ G E MY+G TG+ IF G YYQRL+
Sbjct: 944 FQDATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLR 1003
Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
HMV DK R G V LTRQP +GR GG+RFGEMERD ++AHGAS L +RL SD
Sbjct: 1004 HMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSD 1063
Query: 767 AYRVHVCEHCGLIAIANLKKN-----SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 821
++ VC+ CG KK+ EC+ CK+ I + IPY L EL A+ I
Sbjct: 1064 FAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAAVNI 1123
Query: 822 APRM 825
++
Sbjct: 1124 TMKL 1127
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 342 bits (877), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 247/794 (31%), Positives = 372/794 (46%), Gaps = 94/794 (11%)
Query: 21 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 80
++I +L G + D+ D ++ + L G L G + + + +++ A V+ ++ G
Sbjct: 376 FMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRG 435
Query: 81 KDVNLQ--------FAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYAS 130
+N + + I S ++Y L+TGN + + +G + V ++ +
Sbjct: 436 MAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYR 495
Query: 131 TLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI-TVG 188
+SH R ++ + K R+L WG +CP TP+G CGL+ + A I T
Sbjct: 496 FISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQ 555
Query: 189 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI--HRDPEMLVKTLRRLRRR 246
S I L G + A P + ++G +G H +++ TLR +
Sbjct: 556 SDVSRIPSILYSLGVAPASH-TFAAGPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVE 614
Query: 247 -----VDVNTEVGVVRDI---RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 298
+ ++ E+G V + L ++ + R RP+ + L + K DI+
Sbjct: 615 GKTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPV-----RYLPLDKEDIVG---- 665
Query: 299 ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 358
E+ I++T P+E + +TH E P+
Sbjct: 666 ---------------------PFEQVYMNIAVT----------PQEIQNNVHTHVEFTPT 694
Query: 359 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 418
IL + A++ PF D NQSPRN YQ MGKQ MG R D Y L Q P+V
Sbjct: 695 NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKA 754
Query: 419 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 478
+ P G NA+VA+ Y+GY+ +D++I+N+S+ +RGF +++ +K+
Sbjct: 755 NLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKT-----EKV 809
Query: 479 GTLVKEDFGRPDRSNTMGMRHGSY-----DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 533
+ + G P + G + + +KLD+DGL GT V D I D
Sbjct: 810 DLALNRNRGDP-ITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYF-----D 863
Query: 534 EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG----LRFVKVRVRSVRIPQIGDK 589
+ + T HS SE +++V L + L+ V ++ R R PQIGDK
Sbjct: 864 DTLNKTKIKTY--HS-----SEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDK 916
Query: 590 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 649
FSSRHGQKG + DMP++ GI PDII+NPHA PSRMTIG +E + GK A G
Sbjct: 917 FSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHG 976
Query: 650 KEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 705
D+TP+ D D + L K GY G E MY+G TG L A I++G YYQRL
Sbjct: 977 IAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRL 1036
Query: 706 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 765
+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I HG S L++RL + S
Sbjct: 1037 RHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSS 1096
Query: 766 DAYRVHVCEHCGLI 779
D + VC CG I
Sbjct: 1097 DYTQASVCRECGSI 1110
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila melanogaster
GN=RpI135 PE=2 SV=2
Length = 1129
Score = 338 bits (866), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 254/857 (29%), Positives = 388/857 (45%), Gaps = 124/857 (14%)
Query: 21 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN- 79
++I +L CA G+ ++ D + + L G L VR +QK + +
Sbjct: 348 FMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSP 407
Query: 80 ----GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAG-----VSQVLNRLTYAS 130
V Q +A + ++ LATGN G +++ +NR+ Y
Sbjct: 408 DALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRY-- 465
Query: 131 TLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 189
+SH R ++ + + RQL WG +CP TP+G CGL+ +L L I++
Sbjct: 466 -MSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRP 524
Query: 190 AAYPILEFLEEWGTENFEEISPAVIPQATK---------IFVNGCWVG-IHR-DPEMLVK 238
+ + I ++P + + +F++G +G IH+ + E +V
Sbjct: 525 DPKLVKAIPKHL-------IDMGMMPLSNRRYLGEKLYVVFLDGKHLGHIHQSEAEKIVD 577
Query: 239 TLR--RLRRRVDVNTEVGVV---RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 293
LR ++ + E+G + ++ + L I T R RP++ ++ +R
Sbjct: 578 ELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARMMRPVWNLKWKR--------- 628
Query: 294 ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 353
+EYI T E+ I+ + +E Y D TH
Sbjct: 629 ---------------------VEYIGTLEQLYMEIA----------IDAKEMYPDFTTHL 657
Query: 354 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 413
E+ + + A++IP PD+NQSPRN YQ MGKQ MG N+ + Y L P
Sbjct: 658 ELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGT 717
Query: 414 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 473
PL +++ G NAIVA+ Y+GY+ ED++I+N+++ +RGF
Sbjct: 718 PLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGF----------- 766
Query: 474 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL----DDDGLAPPGTRVSGEDVIIGKTTP 529
G++ K F D+ ++ RH +L D DGL PG+++S G
Sbjct: 767 ---AYGSIYKTKFLTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLS-----YGSPLY 818
Query: 530 ISQDEAQGQASRYTRRDHSISLRHSETGMVDQV--LLTTNADGLRFVKVRVRSVRIPQIG 587
D G+ + Y + + E +V+ + L + + + V + +R R IG
Sbjct: 819 CYFD---GEVATYK----VVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIG 871
Query: 588 DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 647
DKF+SR GQKG Y ED+P+T G+ PDI+ NPH PSRMTI +IE + GK AA
Sbjct: 872 DKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAI 931
Query: 648 MGKEGDATPF----TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 703
G DATPF + +D K L GY G E +Y+G GR +TA IF G +YQ
Sbjct: 932 HGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQ 991
Query: 704 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFD 763
RL+HMV DK R G V+ T QP +GR R GG+RFGEMERD +I+HGA+ L++RLF
Sbjct: 992 RLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFH 1051
Query: 764 QSDAYRVHVCEHCGLI-----------AIANLKKNSFECRGCKNKTDIVQVHIPYACKLL 812
SD VC CG I L CR C + + + + IP++ K L
Sbjct: 1052 NSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYL 1111
Query: 813 FQELMAMAIAPRMLTKE 829
EL ++ I R E
Sbjct: 1112 VTELSSVNINARFKLNE 1128
>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
GN=Polr1b PE=1 SV=1
Length = 1135
Score = 325 bits (834), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 191/489 (39%), Positives = 258/489 (52%), Gaps = 39/489 (7%)
Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
PS V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D Y L PQ PLV
Sbjct: 663 PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
+H P G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S +
Sbjct: 723 RPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID-- 780
Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 533
+ E F + D S G++ G KLD+DGL G ++ D G ++ +
Sbjct: 781 -----LSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGY---LNLN 832
Query: 534 EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDKF 590
+G Y +++ + VD + + +N G + V V VR R P IGDKF
Sbjct: 833 TGEGFVVYYKSKENCV---------VDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKF 883
Query: 591 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 650
+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK AA G
Sbjct: 884 ASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGL 943
Query: 651 EGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 706
DATPF + ++ + L GY G E +Y+G +G L A IF+G YYQRL+
Sbjct: 944 CHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLR 1003
Query: 707 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 766
HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S L +RLF+ SD
Sbjct: 1004 HMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 1063
Query: 767 AYRVHVCEHCGLI----------AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 816
HVC CG + + + ++ + C C I V +PY + EL
Sbjct: 1064 RSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAEL 1123
Query: 817 MAMAIAPRM 825
AM I ++
Sbjct: 1124 AAMNIKVKL 1132
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 103/251 (41%), Gaps = 27/251 (10%)
Query: 13 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLT 66
T K Y + +L A G ED+ D N+ + G L + +L K+
Sbjct: 340 TDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIA 399
Query: 67 RDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLN 124
D RA N +++ F++ + +T +Y LATGN G +G+ V +
Sbjct: 400 LDKRAQKTNVSINNENLMKIFSMGTE-LTRPFEYLLATGNLRSKTGLGFMQDSGLCVVAD 458
Query: 125 RLTYASTLSHLRRLNSPIGREGKLAK-----PRQLHNSQWGMMCPAETPEGQACGLVKNL 179
+L + LSH R ++ R AK R+L WG +CP TP+G CGL+ +L
Sbjct: 459 KLNFIRYLSHFRCVH----RGADFAKMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHL 514
Query: 180 ALMVYIT---VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC---WVGIHRDP 233
+ + V +A+ P L L G + + ++G WV P
Sbjct: 515 TAVCEVVTKFVYTASIPAL--LCGLGVTPVDAAPCRPYSDCYPVLLDGVMVGWVDKELAP 572
Query: 234 EMLVKTLRRLR 244
E + TLRR +
Sbjct: 573 E-VADTLRRFK 582
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes octocarinatus
GN=RPA2 PE=3 SV=2
Length = 1166
Score = 322 bits (826), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 201/546 (36%), Positives = 282/546 (51%), Gaps = 60/546 (10%)
Query: 315 IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 374
IE+I E+ I+ T D+ PE TH E+ P IL + AS+ F ++N
Sbjct: 633 IEWISPLEQMNLSIACTDEDIT-----PET------THQELDPINILSIVASVGVFAEYN 681
Query: 375 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 434
QSPRN YQ M KQ MG N+QFR D Y L +P +P+V TR + P+G N
Sbjct: 682 QSPRNMYQCQMAKQTMGTPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTN 741
Query: 435 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---DEEKKMGTLVKEDFGRPDR 491
A+VA+ Y+GY+ ED++I+N+SS +RGF + ++SY +E T + R
Sbjct: 742 AVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKF 801
Query: 492 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISL 551
N + + S KL++ + P G G + GK D + A +D
Sbjct: 802 LNNVSQKDKSKIKLEN--IDPDGLPKIGSQLTKGKPELCIFDTLKRGAKLSKFKD----- 854
Query: 552 RHSETGMVDQVLLT----TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 607
SE ++ V + N D L + +R RIP IGDKFSSRHGQKG + + + Q
Sbjct: 855 --SEKARIETVRVCGNDDKNPDNLS-IGYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQV 911
Query: 608 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT----DVTVD 663
DMP+T GITPD+I+NPHA PSRMT+G LI+ + K + G+ F + V
Sbjct: 912 DMPFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKTVETFQRYDDNDIVG 971
Query: 664 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 723
+ K L G+ G E MY+G G L A IF+G YYQRL+HMV DK +RG GP+ I
Sbjct: 972 HFGKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDI 1031
Query: 724 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAI-- 781
LT QP +GR + GG+RFGEMERD ++AHGA++ L +RLF SD VC++CG I
Sbjct: 1032 LTHQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCY 1091
Query: 782 ---ANLKKNSF-----------------------ECRGCKNKTDIVQVHIPYACKLLFQE 815
A +K +F C+ CK ++ +V +P+ + L E
Sbjct: 1092 VNRAIMKTQTFIPPSLDESNKDTEDKEIHMNEKVICKVCKKNSNCKKVALPFVLRFLANE 1151
Query: 816 LMAMAI 821
L +M I
Sbjct: 1152 LASMGI 1157
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 102 LATGNW-GQANAAGTR-AGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQ 158
LATGN + N + +G + ++L LSH R ++ E K R+L
Sbjct: 427 LATGNLISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKLLPES 486
Query: 159 WGMMCPAETPEGQACGLVKNLALMVYITVGS 189
WG +CP TP+G CGL+ +++ M + +GS
Sbjct: 487 WGFICPVHTPDGAPCGLLNHIS-MSCVPIGS 516
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 317,567,071
Number of Sequences: 539616
Number of extensions: 13881882
Number of successful extensions: 32002
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 25584
Number of HSP's gapped (non-prelim): 3779
length of query: 842
length of database: 191,569,459
effective HSP length: 126
effective length of query: 716
effective length of database: 123,577,843
effective search space: 88481735588
effective search space used: 88481735588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)