RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 003180
(842 letters)
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 838 bits (2166), Expect = 0.0
Identities = 555/863 (64%), Positives = 669/863 (77%), Gaps = 32/863 (3%)
Query: 1 MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 60
LPH+ + E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+
Sbjct: 343 FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 402
Query: 61 LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQA-NAAGTRAGV 119
LF+KLT+D+ Y+Q+ V+ D N++ AI AKTITSGLKY+LATGNWG+ A +RAGV
Sbjct: 403 LFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 462
Query: 120 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 179
SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 463 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 522
Query: 180 ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 239
+LM I+VG+ PI+ FL EWG E E+ P P AT++FVNG W G+HR+P L++T
Sbjct: 523 SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 582
Query: 240 LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDII 293
LR LRR+ D+N EV ++RDIR KEL+I+TD GR RPLFIVE + L ++K I
Sbjct: 583 LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIA 642
Query: 294 ALQQRESPEDGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 344
L E + G W L+ +G +EYID EEEE+ +I+M DL A + E
Sbjct: 643 KLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEN 702
Query: 345 -------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 391
+A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 703 DLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 762
Query: 392 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 451
+++TNY RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 763 VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 822
Query: 452 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 511
IMNQSSIDRG FRSLFFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLDDDGL
Sbjct: 823 IMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI 882
Query: 512 PPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 569
PG RVSGEDVIIGKTTPIS D E + + +++RD S LR +E G+VDQVL+TTN D
Sbjct: 883 APGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD 942
Query: 570 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
GL+FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPS
Sbjct: 943 GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPS 1002
Query: 630 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 689
RMT+ LIEC++ KVAA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG+
Sbjct: 1003 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 1062
Query: 690 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 749
+L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1063 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMI 1122
Query: 750 AHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYA 808
AHGA+ FLKERL + SDA+RVH+C CGL+ IA L N FEC+GC NK DI Q+HIPYA
Sbjct: 1123 AHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYA 1182
Query: 809 CKLLFQELMAMAIAPRMLTKEDT 831
KLLFQELMAM I PR+ T
Sbjct: 1183 AKLLFQELMAMNITPRLYTDRSR 1205
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 564 bits (1453), Expect = 0.0
Identities = 183/895 (20%), Positives = 330/895 (36%), Gaps = 141/895 (15%)
Query: 3 PHVGTGDFCETKKAYYFGYIIHRLLLCA-LGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 61
+ + E K + + + L A + DD DH GN+R+ G L+ FR+
Sbjct: 288 RTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVG 347
Query: 62 FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ 121
+L R VR + ++ + + ++ + + ++ + SQ
Sbjct: 348 LARLARGVRERMLMGSED--SLTPAKLVNSRPLEAAIREFFSRSQL------------SQ 393
Query: 122 VLNRLTYASTLSHLRRLNS----PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 177
+ S+L H RR+++ + RE R +H + +G +CP ETPEG GL+
Sbjct: 394 FKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLIT 453
Query: 178 NLALMVYI-TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 236
+LA + +G P + T+ ++ + T N G E +
Sbjct: 454 SLAAYARVDELGFIRTPYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERV 513
Query: 237 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 296
V RR V V+ E D+ K ++++ L + R L+
Sbjct: 514 VA--RRKGEPVIVSPEEVEFMDVSPK--QVFSVNTNLIPFLEHDDANRALMG-------- 561
Query: 297 QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIH 356
S L+ + EE S+ + +
Sbjct: 562 ---SNMQTQAVPLIRAQAPVVMTGLEERVVRDSLA---------ALYAEEDGEVAKVDGN 609
Query: 357 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 416
++ ++ +P N T R + L
Sbjct: 610 RIVVRYEDGRLVEYPLRRFYRSNQG-------------TALDQRPRVVVGQRVRKGDLLA 656
Query: 417 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 476
A E+ G N +VAI + GYN ED++++++ + R F+ S+ Y E +
Sbjct: 657 DGPASENGFL---ALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEAR 713
Query: 477 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE-- 534
+ + + + LD++G+ G V D+++G+T+ + E
Sbjct: 714 DTKLGPERIT-----RDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPT 768
Query: 535 -------AQGQASRYTRRDHSISLRHSETGMVDQVL--------LTTNADGLRFVKVRVR 579
+ +D S+ + E G+V + + + V+V V
Sbjct: 769 PEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVA 828
Query: 580 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 639
R Q+GDK ++RHG KG V EDMP +G D+I+NP +PSRM +GQ++E
Sbjct: 829 QKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILET 888
Query: 640 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ------------------------ 675
+G +G+ + F I + L +
Sbjct: 889 HLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAE 948
Query: 676 -------------------MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 716
++G +Y+G TG + I +G + +L HMV+DK+H+R
Sbjct: 949 KLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHAR 1008
Query: 717 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 776
GP ++T+QP G+++ GG RFGEME + A+GA+H L+E L +SD
Sbjct: 1009 STGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNA--- 1065
Query: 777 GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDT 831
D+ + +P + ++L +EL A+A+ + L ++D
Sbjct: 1066 -------------AYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDN 1107
>d1fc6a4 c.14.1.2 (A:78-156,A:249-463) Photosystem II D1 C-terminal
processing protease {Algae (Scenedesmus obliquus)
[TaxId: 3088]}
Length = 294
Score = 30.1 bits (67), Expect = 1.0
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 577 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 629
R + Q S G TV T + G++PD+ ++P +P+
Sbjct: 224 RTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPEVLPT 276
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 28.0 bits (62), Expect = 1.1
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 768 YRVHVCEHC-GLIAIANLKKNSFECRGCKNKTDIVQVHIPY-ACKLLFQELMAMAIAPRM 825
Y CE C G + K + C+ + + + C+ ++ +A+ + P
Sbjct: 15 YNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECR--LKKCLAVGMRPEC 72
Query: 826 LTKEDTKQSK 835
+ E+ K
Sbjct: 73 VVPENQCAMK 82
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 25.8 bits (56), Expect = 5.2
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 755 HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN------KTDIVQVHIPYA 808
L E + + + C C I ++ C C K + H +
Sbjct: 5 KKLTEGVLMRDPKFLW--CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRS 62
Query: 809 CKLLFQELMAM 819
C+ FQ M
Sbjct: 63 CE-DFQNWKRM 72
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH
{Salmonella typhimurium [TaxId: 90371]}
Length = 114
Score = 26.5 bits (58), Expect = 6.3
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 188 GSAAYPILEFLEEWGTENFEEI 209
G + L +W N ++
Sbjct: 88 GEQVSDKVAALADWIELNLPQV 109
>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
IRBP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 302
Score = 26.9 bits (59), Expect = 9.7
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 599 TVGMTYTQEDMPWTVEGITPDIIVN 623
+ W G+ PD IV
Sbjct: 259 PIINFIDSNGDYWLGGGVVPDAIVL 283
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,195,662
Number of extensions: 155768
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 10
Length of query: 842
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 749
Effective length of database: 1,130,706
Effective search space: 846898794
Effective search space used: 846898794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)