Citrus Sinensis ID: 003180
Local Sequence Feature Prediction
| Prediction and Method | Result |
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Function Prediction
Annotation transfered from Closely Related SWISS-PROT Entries 
| Annotation | Function Description | Confidence Level | Reference Protein |
| DNA-directed RNA polymerase II subunit RPB2 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. | confident | P38420 |
| DNA-directed RNA polymerase II subunit RPB2 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. | probable | Q42877 |
| DNA-directed RNA polymerase II subunit RPB2 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. | probable | Q8CFI7 |
Prediction of Enzyme Commission Number
| EC Number | Description | Confidence Level | |||||||||
| 2.-.-.- | Transferases. | probable | |||||||||
| 2.7.-.- | Transferring phosphorous-containing groups. | probable | |||||||||
| 2.7.7.- | Nucleotidyltransferases. | probable | |||||||||
| 2.7.7.6 | DNA-directed RNA polymerase. | probable |
Spatial Structural Prediction
Structural Models Based on Templates
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Template: 3QQC, chain A Confidence level:confident Coverage over the Query: 767-829 View the alignment between query and template View the model in PyMOL |
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Template: 3TBI, chain B Confidence level:confident Coverage over the Query: 466-568 View the alignment between query and template View the model in PyMOL |
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Template: 3MLQ, chain A Confidence level:probable Coverage over the Query: 42-106 View the alignment between query and template View the model in PyMOL |
Templates for Structure Prediction
| ID | Alignment Graph | Confidence Level |
View Alignment and Template |
| Query | |||
| 3lu0, chain C | very confident | Alignment | Template Structure | |
| 3h0g, chain B | very confident | Alignment | Template Structure |