Query 003181
Match_columns 841
No_of_seqs 429 out of 2302
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 18:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2039 Transcriptional coacti 100.0 7.5E-67 1.6E-71 628.9 36.6 701 11-836 4-722 (875)
2 smart00318 SNc Staphylococcal 99.9 9.7E-25 2.1E-29 211.6 18.5 131 11-150 2-137 (138)
3 PRK06518 hypothetical protein; 99.9 2.5E-24 5.5E-29 215.4 18.0 138 5-152 17-157 (177)
4 smart00318 SNc Staphylococcal 99.9 4.8E-24 1E-28 206.7 18.5 138 186-364 1-138 (138)
5 cd00175 SNc Staphylococcal nuc 99.9 3.5E-24 7.7E-29 205.1 16.7 123 18-150 1-128 (129)
6 KOG2039 Transcriptional coacti 99.9 7.5E-24 1.6E-28 256.8 18.6 533 10-746 319-866 (875)
7 cd00175 SNc Staphylococcal nuc 99.9 4.4E-23 9.6E-28 197.5 16.2 129 194-364 1-129 (129)
8 COG1525 Micrococcal nuclease ( 99.8 3.4E-20 7.3E-25 190.1 15.1 128 12-152 42-172 (192)
9 PF00565 SNase: Staphylococcal 99.8 2.7E-20 5.8E-25 172.2 10.2 107 42-151 1-108 (108)
10 PRK06518 hypothetical protein; 99.8 3.2E-19 6.9E-24 178.8 16.8 136 183-364 19-156 (177)
11 PF00565 SNase: Staphylococcal 99.8 1.2E-18 2.6E-23 161.2 10.0 106 213-364 1-108 (108)
12 COG1525 Micrococcal nuclease ( 99.7 6.5E-17 1.4E-21 165.8 14.2 129 188-365 42-172 (192)
13 PF00567 TUDOR: Tudor domain; 98.7 5.4E-08 1.2E-12 90.8 9.7 77 760-837 2-79 (121)
14 cd04508 TUDOR Tudor domains ar 98.0 7.4E-06 1.6E-10 64.6 4.0 26 813-838 1-26 (48)
15 smart00333 TUDOR Tudor domain. 97.8 3.4E-05 7.3E-10 63.1 4.7 28 809-837 2-29 (57)
16 smart00743 Agenet Tudor-like d 96.5 0.0042 9E-08 51.6 4.8 29 809-837 2-30 (61)
17 PF06003 SMN: Survival motor n 94.9 0.027 5.9E-07 60.9 4.3 30 808-837 67-96 (264)
18 PF11717 Tudor-knot: RNA bindi 85.7 0.96 2.1E-05 36.9 3.5 27 810-837 1-27 (55)
19 KOG3026 Splicing factor SPF30 80.1 1.4 3E-05 46.0 2.9 28 809-836 90-117 (262)
20 PF09465 LBR_tudor: Lamin-B re 78.5 3.5 7.5E-05 33.7 4.1 29 809-837 5-33 (55)
21 KOG3038 Histone acetyltransfer 72.2 9.4 0.0002 40.7 6.5 74 761-835 145-224 (264)
22 PF05641 Agenet: Agenet domain 64.5 9.8 0.00021 32.3 4.0 28 810-837 1-31 (68)
23 KOG2279 Kinase anchor protein 55.2 30 0.00064 40.8 6.9 80 757-837 400-483 (608)
24 PF15057 DUF4537: Domain of un 50.4 24 0.00051 33.9 4.4 69 760-833 11-80 (124)
25 PF07039 DUF1325: SGF29 tudor- 47.7 21 0.00046 34.5 3.7 68 761-834 17-96 (130)
26 PF11302 DUF3104: Protein of u 39.4 40 0.00086 29.5 3.6 28 809-836 5-38 (75)
27 KOG3038 Histone acetyltransfer 37.4 52 0.0011 35.3 4.9 32 807-838 125-159 (264)
28 KOG4327 mRNA splicing protein 34.1 30 0.00066 35.5 2.5 29 807-835 65-93 (218)
29 PLN00104 MYST -like histone ac 31.4 52 0.0011 38.3 4.1 29 808-836 52-80 (450)
30 COG2134 Cdh CDP-diacylglycerol 30.2 66 0.0014 33.4 4.1 52 41-95 80-136 (252)
31 smart00743 Agenet Tudor-like d 25.0 1.2E+02 0.0027 24.7 4.3 40 377-419 17-56 (61)
32 PRK12442 translation initiatio 20.4 1.9E+02 0.004 26.2 4.6 31 187-218 8-38 (87)
No 1
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=100.00 E-value=7.5e-67 Score=628.88 Aligned_cols=701 Identities=45% Similarity=0.721 Sum_probs=595.3
Q ss_pred eEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCC-CCCChhHHHHHHHHHHhcCCCEEEEEEccccC
Q 003181 11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG-GLDEPFAWDSREFLRKLCIGKEVTFRVDYAVP 89 (841)
Q Consensus 11 ~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrL~gIdaPe~~~~~-~~~ep~g~eAre~Lr~ll~Gk~V~~~~~~~~d 89 (841)
...+.|..|.|||.+.++.. ...+++++.+++|+.+.+|++.+++ +-++||+|++++|+|++.+|+.+.|..++-..
T Consensus 4 ~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~~ 81 (875)
T KOG2039|consen 4 RLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMSA 81 (875)
T ss_pred EEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeecc
Confidence 45689999999999999984 4567889999999999999999874 23799999999999999999999999997345
Q ss_pred CCCcEEEEEEeCCccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCCCCcCCCCCCcccccccCCCCcCC
Q 003181 90 NIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIG 169 (841)
Q Consensus 90 ~~gR~~~~V~~~g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~~~~~~~~~r~i~~~~~~ 169 (841)
.++|.+|.+++++.+.++.|+..||+.+..... .+++|...+...|.+|++.++|+|+.. ....+++.++
T Consensus 82 ~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~~----~~~~~~~~~~--- 151 (875)
T KOG2039|consen 82 NNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSKL----DHFIRNLKDS--- 151 (875)
T ss_pred ccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhcccccccc----ccceeecccc---
Confidence 679999999999999999999999999887653 227788999999999999999999932 3345778765
Q ss_pred CCchhhHHHhhhhcCCCcceeeEEEecCCC-EEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCcccccc
Q 003181 170 DSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEA 248 (841)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~~~Ve~V~dG~-t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~ 248 (841)
...+..|+..+.++++.++||+|++|+ +.||.+.+++..++++|+|+.||.+..+. +++
T Consensus 152 ---~~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~~------ 211 (875)
T KOG2039|consen 152 ---ALNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DGS------ 211 (875)
T ss_pred ---ccccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CCC------
Confidence 245688899888999999999999999 68888778778899999999999987632 121
Q ss_pred ccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHhccCceEEEEEeeecCCCCEEEEEEecCCCchhhHHHHHHhcCc
Q 003181 249 VAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGL 328 (841)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~ep~a~eAk~f~~~~ll~r~V~i~~~~~D~yg~~~~~V~~~~g~~~~di~~~LL~~Gl 328 (841)
..-.+||+.+|+.|++.++++|+|.|.+++...+-.++|+|++++|+ +++.|+.+|+
T Consensus 212 -------------------~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~~ 268 (875)
T KOG2039|consen 212 -------------------PSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEGL 268 (875)
T ss_pred -------------------CCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccch
Confidence 12358999999999999999999999999999887899999999984 9999999999
Q ss_pred EEEeecccccchHHHHHHHHHHHHHHHHhcccC-CcCCCCCCCCcccccccceeEEEEEEEeCcEEEEEeCCCCCCCccc
Q 003181 329 AKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALA 407 (841)
Q Consensus 329 A~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~Gi-W~~~~~~~~~~~~~~~~~~~~~V~~V~sgd~i~v~~~~~~~~~~~~ 407 (841)
+++.+|+.+.++.++...++++|..++..+..+ |++|..+.+.++.+..+.|.+.|++++.+||+.+...+ |.
T Consensus 269 ~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~--- 342 (875)
T KOG2039|consen 269 AKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS--- 342 (875)
T ss_pred HHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC---
Confidence 999999999888877778999999999999999 99999998888776678899999999999999999865 22
Q ss_pred eEEEEeecccCCCCCCCCCCCc--chhhHHHHHHHHHhhcCCcEEEEEEeeeecccccccccccCCCCCCCCCCCCCCcc
Q 003181 408 ERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKG 485 (841)
Q Consensus 408 e~~v~Lssi~~p~~~~~~~~~~--~~~~~~eareflR~~~iGk~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 485 (841)
+.++.+++|+.|+.+++.+..+ .-||+++|++|+|+++||++|.++++|.++... .
T Consensus 343 ~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~----------------~------ 400 (875)
T KOG2039|consen 343 ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRE----------------N------ 400 (875)
T ss_pred ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeeccccccc----------------c------
Confidence 7899999999999555444334 489999999999999999999999999976420 0
Q ss_pred ccccCCCCCCCCcccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCCcchhHHHHhcccceeeecC-CcccccH
Q 003181 486 QAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSN 564 (841)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~nv~~~lv~~G~a~v~~~r-~~~~~s~ 564 (841)
.. . ..+.+.+ ..|+|+++.++.+|++++++|| ++..++.
T Consensus 401 ---------------~~--~-~~c~~~~----------------------~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~ 440 (875)
T KOG2039|consen 401 ---------------VP--T-KVCALPL----------------------GGGKNVAELLVKKGLATVVRKRQDDEQRSS 440 (875)
T ss_pred ---------------cc--c-ccccccC----------------------CCcceeeEEEecccchhhhhhHhhhhhhcc
Confidence 00 0 1111221 1368999999999999999999 4567899
Q ss_pred HHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCCcceEEE
Q 003181 565 YYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAF 644 (841)
Q Consensus 565 ~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~k~~~l~~~Ve~V~dGdtl~v~ip~~~~~i~v 644 (841)
.|+.|+.+|..|..+++|||+.+.+..+.+.+++.--...+..+++++++...+..+|+.+++|+++++++|++.|.+++
T Consensus 441 ~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~ 520 (875)
T KOG2039|consen 441 HYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQF 520 (875)
T ss_pred hhhhhhcchHHHHhhhhhhcccCCCcceeechhhhhhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEE
Confidence 99999999999999999999987775666777753222334489999999999999999999999999999999999999
Q ss_pred EEeeecCCC-------CCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC-CcchhHHHHHcCCeecccccC
Q 003181 645 SFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTSFG 716 (841)
Q Consensus 645 ~LaGI~~P~-------~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~-~~~i~~~Ll~~GlA~v~~~~~ 716 (841)
.++|++||+ .+++|+.+|..|+..+++++++++.+..+|+.|++++..|.+ +.++...++++||+..+ +.
T Consensus 521 ~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~--~~ 598 (875)
T KOG2039|consen 521 ALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH--FA 598 (875)
T ss_pred eeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--hh
Confidence 999999997 488999999999999999999999999999999999999988 88999999999999996 55
Q ss_pred CCCCCchHHHHHHHHHHH-hccccccccccCCcccccCcc--ccCCcccEEEEEEEEEeeCCeEEEEecCc-hhHHHHHH
Q 003181 717 SDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVSNGAA--VEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQ 792 (841)
Q Consensus 717 ~~~~~~~~~l~~AE~~AK-~~k~GlW~~~~~~~~~~~~~~--~~~~~g~~~~v~Vs~V~s~~~f~iQ~~~~-~~L~~L~~ 792 (841)
.++......+..++..|+ ..+.++|..+.++........ .......+..+.+++|..+..||+|..+. .+++++|.
T Consensus 599 ~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~~~ 678 (875)
T KOG2039|consen 599 AERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKIMT 678 (875)
T ss_pred hhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHHHH
Confidence 555566677889999999 899999999877633211110 00122345678888887779999999984 89999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 793 QLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 793 ~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
.|+.......+..+.+.|+.|++|+|+|+-||+||||+|+.|.+
T Consensus 679 ~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~ 722 (875)
T KOG2039|consen 679 NLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLD 722 (875)
T ss_pred HHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeecc
Confidence 99998887667767899999999999999999999999999876
No 2
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.93 E-value=9.7e-25 Score=211.57 Aligned_cols=131 Identities=39% Similarity=0.519 Sum_probs=113.6
Q ss_pred eEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCCCC----CChhHHHHHHHHHHhcCCCEEEEEEcc
Q 003181 11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL----DEPFAWDSREFLRKLCIGKEVTFRVDY 86 (841)
Q Consensus 11 ~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrL~gIdaPe~~~~~~~----~ep~g~eAre~Lr~ll~Gk~V~~~~~~ 86 (841)
.+.|+|.+|+|||||.|...+ + ...+|||+||||||..+.+.. .+|||.+|++||+++|.|+.|.|.++.
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~----~--~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~ 75 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK----N--KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDS 75 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC----C--CEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEec
Confidence 468999999999999998763 2 578999999999999865543 699999999999999999999999874
Q ss_pred ccCCCCcEEEEEEe-CCccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCCCCcC
Q 003181 87 AVPNIGREFGTVIL-GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (841)
Q Consensus 87 ~~d~~gR~~~~V~~-~g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs 150 (841)
.|+|||.+|+||+ +|.|||++||++|||+++..... .....+.+|.+||++||++++|||+
T Consensus 76 -~D~~gr~~a~v~~~~~~~l~~~Lv~~G~A~~~~~~~~--~~~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 76 -KDRYGRFLGTVYLNGGNNIAEELVKEGLAKVYRYADK--DEYRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred -cCCCCCEEEEEEECCCCcHHHHHHhcCCEEEEEecCc--cccHhHHHHHHHHHHHHHhCcCCCC
Confidence 7999999999999 56789999999999999887642 2122257899999999999999997
No 3
>PRK06518 hypothetical protein; Provisional
Probab=99.92 E-value=2.5e-24 Score=215.40 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=115.0
Q ss_pred CCCCCCeEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCC---CCCCChhHHHHHHHHHHhcCCCEEE
Q 003181 5 AAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR---GGLDEPFAWDSREFLRKLCIGKEVT 81 (841)
Q Consensus 5 ~~~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrL~gIdaPe~~~~---~~~~ep~g~eAre~Lr~ll~Gk~V~ 81 (841)
|......+.|+| +|+|||||.|...+ ......++|||+||||||.... .+..+|||.+|+++|+.++.|+.|.
T Consensus 17 ~~~~~~~~~G~v-~V~DGDTl~l~~~~---~~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~ 92 (177)
T PRK06518 17 ASNNVVIFHGRA-QVTSGVTFKLIADG---WRKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLS 92 (177)
T ss_pred cccccccccceE-EEEcCCEEEEeecc---ccCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEE
Confidence 446667778988 79999999997431 0011357999999999998754 3467899999999999999999999
Q ss_pred EEEccccCCCCcEEEEEEeCCccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCCCCcCCC
Q 003181 82 FRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (841)
Q Consensus 82 ~~~~~~~d~~gR~~~~V~~~g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~ 152 (841)
|... . |+|||.+|+||++|.+||++||++|||++|..+.. ..+...|..+|++||++++|||+.+
T Consensus 93 ~~~~-~-D~ygR~lA~~~~~g~dln~~mV~~G~A~ay~~~~~----~~~~~~y~~aE~~AR~~k~GLW~~~ 157 (177)
T PRK06518 93 CRQA-R-MENGVHYAQCFVDGVDIAALGLAEGMAVLSKDDHE----DPGPAQYASLEEKARKAYRGLWSST 157 (177)
T ss_pred EEEe-c-ccCCCEEEEEEECCEEHHHHHHhCCCEEEEeeccC----CCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 9975 3 99999999999999999999999999999987641 2335679999999999999999964
No 4
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.92 E-value=4.8e-24 Score=206.68 Aligned_cols=138 Identities=33% Similarity=0.593 Sum_probs=116.6
Q ss_pred CcceeeEEEecCCCEEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccC
Q 003181 186 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 265 (841)
Q Consensus 186 ~~~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (841)
+++.|+|.+|+|||||+|.+.+. +..+|||+||+||++.+... .
T Consensus 1 ~~~~~~V~~V~DGDT~~v~~~~~-~~~~vrL~gIdaPe~~~~~~-----------~------------------------ 44 (138)
T smart00318 1 KEIRGVVERVLDGDTIRVRLPKN-KLITIRLSGIDAPETARPNK-----------G------------------------ 44 (138)
T ss_pred CceeEEEEEEecCCEEEEEeCCC-CEEEEEEEeccCCccCCCCC-----------C------------------------
Confidence 35789999999999999987643 67899999999999986320 0
Q ss_pred CCCCCCchhHHHHHHHHHHhccCceEEEEEeeecCCCCEEEEEEecCCCchhhHHHHHHhcCcEEEeecccccchHHHHH
Q 003181 266 GQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 345 (841)
Q Consensus 266 ~~~~~~ep~a~eAk~f~~~~ll~r~V~i~~~~~D~yg~~~~~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~ 345 (841)
...+.+|||.+|+.|++.+|++|+|.+.+.+.|+|||++|+|++.+|. ||+++||++|||+++.+........ ..
T Consensus 45 -~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~~D~~gr~~a~v~~~~~~---~l~~~Lv~~G~A~~~~~~~~~~~~~-~~ 119 (138)
T smart00318 45 -DGTTDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYGRFLGTVYLNGGN---NIAEELVKEGLAKVYRYADKDEYRV-YD 119 (138)
T ss_pred -CccccCcHHHHHHHHHHHHhCCCEEEEEEeccCCCCCEEEEEEECCCC---cHHHHHHhcCCEEEEEecCccccHh-HH
Confidence 012468999999999999999999999999999999999999998765 4999999999999998665543222 35
Q ss_pred HHHHHHHHHHHhcccCCcC
Q 003181 346 RLKAADLQAKKTRLRMWTN 364 (841)
Q Consensus 346 ~l~~AE~~Ak~~k~GiW~~ 364 (841)
.|.+||++||++++|||++
T Consensus 120 ~l~~ae~~Ar~~~~GlW~~ 138 (138)
T smart00318 120 ELLEAEEAAKKARKGLWSD 138 (138)
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 8999999999999999973
No 5
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.92 E-value=3.5e-24 Score=205.14 Aligned_cols=123 Identities=40% Similarity=0.560 Sum_probs=110.0
Q ss_pred EEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCC----CCCCChhHHHHHHHHHHhcCCCEEEEEEccccCCCCc
Q 003181 18 AVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR----GGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGR 93 (841)
Q Consensus 18 ~V~dGDTi~v~~~~~~~~g~~~~~~VrL~gIdaPe~~~~----~~~~ep~g~eAre~Lr~ll~Gk~V~~~~~~~~d~~gR 93 (841)
+|+|||||.|...+ + ...+|||+||||||+.+. ....+|||.+|++||++++.|++|.|.++. .|+|||
T Consensus 1 rV~dGDt~~v~~~~----~--~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~-~d~~gr 73 (129)
T cd00175 1 RVIDGDTIRVRLPP----G--PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDS-KDRYGR 73 (129)
T ss_pred CeecCcEEEEEeCC----C--CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEcc-CCCCCC
Confidence 58999999998863 2 578999999999999765 356899999999999999999999999874 799999
Q ss_pred EEEEEEeCC-ccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCCCCcC
Q 003181 94 EFGTVILGD-KNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (841)
Q Consensus 94 ~~~~V~~~g-~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs 150 (841)
.+|+||+++ .+||++||++|||+++..+. ..+.+..+|.+||++||++++|||+
T Consensus 74 ~la~v~~~~~~~v~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~k~GiW~ 128 (129)
T cd00175 74 TLGTVYLNGGENIAEELVKEGLARVYRYYP---DDSEYYDELLEAEEAAKKARKGLWS 128 (129)
T ss_pred EEEEEEeCCCCcHHHHHHhcCCEEEEEECC---CCcHHHHHHHHHHHHHHHhCcCCCC
Confidence 999999977 99999999999999998874 2246889999999999999999997
No 6
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=99.91 E-value=7.5e-24 Score=256.76 Aligned_cols=533 Identities=26% Similarity=0.340 Sum_probs=364.6
Q ss_pred CeEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCC---CCC-CCChhHHHHHHHHHHhcCCCEEEEEEc
Q 003181 10 GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLAR---RGG-LDEPFAWDSREFLRKLCIGKEVTFRVD 85 (841)
Q Consensus 10 ~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrL~gIdaPe~~~---~~~-~~ep~g~eAre~Lr~ll~Gk~V~~~~~ 85 (841)
..+.+.|..++.+|++.+.... | .+.++.+..|..|+.+. ... ..-||+.+|++||++.++|++|.+..+
T Consensus 319 ~~~~~~v~e~~~~d~~~~~~~s----g--~~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~ 392 (875)
T KOG2039|consen 319 KGFSGKVVEVLVSDCVLVALDS----G--SENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMD 392 (875)
T ss_pred ccccceeeeeeccCceEEecCC----C--CceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeee
Confidence 3456689999999999998762 2 36789999999999221 111 357999999999999999999999999
Q ss_pred cccCCCCc---EEEEEEeC-CccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCCCCcCCCCCCcccccc
Q 003181 86 YAVPNIGR---EFGTVILG-DKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIR 161 (841)
Q Consensus 86 ~~~d~~gR---~~~~V~~~-g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~~~~~~~~~r 161 (841)
+.++...+ ..|.+++. |.|+++.++..|++.+.++..+....+..|+.|..+|..|...+.|+|+.+.+.. ...+
T Consensus 393 ~~~~~~~~~~~~~c~~~~~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d~ll~~E~~~~~~~~~~~s~~~~~~-~~~~ 471 (875)
T KOG2039|consen 393 VIRPRRENVPTKVCALPLGGGKNVAELLVKKGLATVVRKRQDDEQRSSHYDLLLVAEAIAIKGKKGCHSKKLDPT-LRIT 471 (875)
T ss_pred cccccccccccccccccCCCcceeeEEEecccchhhhhhHhhhhhhcchhhhhhcchHHHHhhhhhhcccCCCcc-eeec
Confidence 87653222 56777774 4999999999999999887754445566779999999999999999999986521 1223
Q ss_pred cCCCCcCCCCchhhHHHhhh-hcCCCcceeeEEEecCCCEEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccC
Q 003181 162 NLPPSAIGDSSNFNAMALLD-ANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETN 240 (841)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~ 240 (841)
.+.-.. ..+...|+. ..++..+..+|+.+++|+.++++++.....+++.++|++||+..| +
T Consensus 472 ~~~~~i-----~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r-~------------ 533 (875)
T KOG2039|consen 472 DLTVDI-----VRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGAR-N------------ 533 (875)
T ss_pred hhhhhh-----hcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCccccc-c------------
Confidence 333211 223335665 357889999999999999999999988889999999999999876 2
Q ss_pred CCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHhccCceEEEEEeeecCCCCEEEEEEecCCCchhhHH
Q 003181 241 GDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLA 320 (841)
Q Consensus 241 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~a~eAk~f~~~~ll~r~V~i~~~~~D~yg~~~~~V~~~~g~~~~di~ 320 (841)
+ ....+||+.+|..|+..++++|++.|.++.+|+.|+++|..+...+.+ +.
T Consensus 534 ~--------------------------~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~---~s 584 (875)
T KOG2039|consen 534 D--------------------------VQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTN---LS 584 (875)
T ss_pred c--------------------------ccccCCccHHHHHHhhhheeccceEEEEeeeccCcccccccccccccc---ch
Confidence 1 134799999999999999999999999999999999999998865554 99
Q ss_pred HHHHhcCcEEEeecccccchHHHHHHHHHHHHHHH-HhcccCCcCCCCCCCCcccccccceeEEEEEEEeCcEEEEEeCC
Q 003181 321 MELVENGLAKYIEWSANMMEEDAKRRLKAADLQAK-KTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDS 399 (841)
Q Consensus 321 ~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~Ak-~~k~GiW~~~~~~~~~~~~~~~~~~~~~V~~V~sgd~i~v~~~~ 399 (841)
..++..||+.++ +++.... ....|..++..|+ ..+.++|.++.++...... .+..-| .+..
T Consensus 585 ~~~~e~~L~~~~-~~~e~~~--~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~-----------~~~~~~--~~~~-- 646 (875)
T KOG2039|consen 585 LKLLEQGLAPEH-FAAERSS--EYPPLESAELPAKLEQKLKIWLNYVEPVVEEVV-----------LCLEKD--ERDL-- 646 (875)
T ss_pred hhhhhhhcCccc-hhhhhhh--hccchhhhhhccccchhcceeecccccchhhhe-----------eccccc--cccc--
Confidence 999999999999 4443222 2348999999999 9999999999887432210 000000 0000
Q ss_pred CCCCCccceEEEEeecccCCCCCCCCCCCcchhhHHHH-HHHHHhhcCCcEEEEEEeeeecccccccccccCCCCCCCCC
Q 003181 400 IPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREA-REFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTK 478 (841)
Q Consensus 400 ~~~~~~~~e~~v~Lssi~~p~~~~~~~~~~~~~~~~ea-reflR~~~iGk~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 478 (841)
....+.+..|-.+ +......+..+..++. -..|+..+. ..-.....|.
T Consensus 647 -------~~~~~~~~~i~p~--~~F~~q~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~--------------------- 695 (875)
T KOG2039|consen 647 -------NTLKVVVTEITPG--KGFYVQSISDGSKITKIMTNLSQLVE-LKPPSSGSYT--------------------- 695 (875)
T ss_pred -------ccceeeEeeecCC--CcceeecccchHHHHHHHHHHHHHhh-hcccccCCCC---------------------
Confidence 0111222222111 1111111111111111 112222211 1111000000
Q ss_pred CCCCCccccccCCCCCCCCcccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCCcchhHHHHhcccceeeecCC
Q 003181 479 GPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRD 558 (841)
Q Consensus 479 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~nv~~~lv~~G~a~v~~~r~ 558 (841)
+ + -| ..+++ .
T Consensus 696 -----------------p---------~-~g----------------------------d~c~A------------~--- 705 (875)
T KOG2039|consen 696 -----------------P---------K-RG----------------------------DLCVA------------K--- 705 (875)
T ss_pred -----------------C---------C-CC----------------------------Ceeee------------e---
Confidence 0 0 00 01111 1
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCC
Q 003181 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKE 638 (841)
Q Consensus 559 ~~~~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~k~~~l~~~Ve~V~dGdtl~v~ip~~ 638 (841)
.+-+..|||+++.. +=++ ....++|+|| ||.+ .+|+. +.++++.... + +|.
T Consensus 706 y~~D~qwyRa~i~~----------V~~~-~~~~V~yiDy--gn~E----~lp~~-~l~~lp~~~~---------~-~p~- 756 (875)
T KOG2039|consen 706 YSLDGQWYRALIVE----------VLDP-ESMEVFYIDY--GNIE----TLPFV-RLKPLPPHFS---------L-LPP- 756 (875)
T ss_pred eccccceeeeeeee----------eccC-cceeEEEEec--Cccc----ccccc-cccCCChHHh---------c-Cch-
Confidence 12246899998874 1122 3345689999 7888 78887 8888887533 1 566
Q ss_pred cceEEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEe--CCcchhHHHHH-cCCeeccccc
Q 003181 639 TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWE--SRTNVAVILLE-AGLAKLQTSF 715 (841)
Q Consensus 639 ~~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~--~~~~i~~~Ll~-~GlA~v~~~~ 715 (841)
....|+|+||..|. .+.+.+++..++.+..++..+.+.+...-....+++.++. ...++++.|+. .|++......
T Consensus 757 -~a~~~~L~~ik~~~-~~~~~e~~i~~l~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~d~~~~l~~~~~l~~~~~~~ 834 (875)
T KOG2039|consen 757 -VAQECGLAGIKEPQ-LEDLKEEAIRYLDEDTLGHKCQVNVELRVVGNSLLVTLLYTVEELDVGEELVAVEGLSLVEQRK 834 (875)
T ss_pred -HHhhhhhhcccCCc-ccchHHHHHHHHHHHhhcccceeeeeeeeeccceeEEEeeecCcCChhHhhhhhcccccccccc
Confidence 44679999999886 5779999999999999999777764332223346666654 37899999999 8988876332
Q ss_pred C-CCCCCchHHHHHHHHHHHhccccccccccC
Q 003181 716 G-SDRIPDSHLLEQAEKSAKSQKLKIWENYVE 746 (841)
Q Consensus 716 ~-~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~ 746 (841)
. .........+..+++.|+..+.++|.....
T Consensus 835 ~~~~~q~~~~~~~~~qq~a~~~~~~~~~y~~~ 866 (875)
T KOG2039|consen 835 TEEVLQALLDQLEKAQQEARKEHLNIWFYGDV 866 (875)
T ss_pred cchHHHHHhhHhhhchhhHHhhhhhhhhhcCc
Confidence 1 111123466888999999999999987543
No 7
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.90 E-value=4.4e-23 Score=197.55 Aligned_cols=129 Identities=34% Similarity=0.604 Sum_probs=109.8
Q ss_pred EecCCCEEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCch
Q 003181 194 QARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEP 273 (841)
Q Consensus 194 ~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep 273 (841)
+|+|||||+|.+.+. +.++|||+||+||++.+... + ...+.+|
T Consensus 1 rV~dGDt~~v~~~~~-~~~~vrL~gId~Pe~~~~~~-----------~-------------------------~~~~~~~ 43 (129)
T cd00175 1 RVIDGDTIRVRLPPG-PLITVRLSGIDAPETARPNK-----------G-------------------------KSETDEP 43 (129)
T ss_pred CeecCcEEEEEeCCC-CEEEEEEEeecCccccCCcc-----------C-------------------------CCCCCCc
Confidence 589999999987654 67899999999999876320 0 1245799
Q ss_pred hHHHHHHHHHHhccCceEEEEEeeecCCCCEEEEEEecCCCchhhHHHHHHhcCcEEEeecccccchHHHHHHHHHHHHH
Q 003181 274 FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQ 353 (841)
Q Consensus 274 ~a~eAk~f~~~~ll~r~V~i~~~~~D~yg~~~~~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~ 353 (841)
||.+|+.|++.+|++++|.|.+.+.|+|||++|+|++.++. ||+++||++|||+++...... ......|.+||++
T Consensus 44 ~g~~A~~~l~~~l~~~~V~i~~~~~d~~gr~la~v~~~~~~---~v~~~Lv~~G~A~~~~~~~~~--~~~~~~l~~ae~~ 118 (129)
T cd00175 44 FGEEAKEFLKKLLLGKKVQVEVDSKDRYGRTLGTVYLNGGE---NIAEELVKEGLARVYRYYPDD--SEYYDELLEAEEA 118 (129)
T ss_pred hHHHHHHHHHHHhCCCEEEEEEccCCCCCCEEEEEEeCCCC---cHHHHHHhcCCEEEEEECCCC--cHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997644 599999999999999865543 2344699999999
Q ss_pred HHHhcccCCcC
Q 003181 354 AKKTRLRMWTN 364 (841)
Q Consensus 354 Ak~~k~GiW~~ 364 (841)
||++|+|||++
T Consensus 119 Ak~~k~GiW~~ 129 (129)
T cd00175 119 AKKARKGLWSD 129 (129)
T ss_pred HHHhCcCCCCC
Confidence 99999999973
No 8
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.4e-20 Score=190.07 Aligned_cols=128 Identities=29% Similarity=0.431 Sum_probs=112.6
Q ss_pred EEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCC--CCCCChhHHHHHHHHHHhcCC-CEEEEEEcccc
Q 003181 12 YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR--GGLDEPFAWDSREFLRKLCIG-KEVTFRVDYAV 88 (841)
Q Consensus 12 ~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrL~gIdaPe~~~~--~~~~ep~g~eAre~Lr~ll~G-k~V~~~~~~~~ 88 (841)
..+.|.+|+|||||.+.... ....+|||.||||||..+. .+..+|||.+|++||++++.+ +.|.|......
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~------~~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~ 115 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG------GQAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLADRK 115 (192)
T ss_pred CCCceEEecCCCeEEEecCC------CceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCCcc
Confidence 34789999999999999873 2578999999999999865 456899999999999999997 88888865327
Q ss_pred CCCCcEEEEEEeCCccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCCCCcCCC
Q 003181 89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (841)
Q Consensus 89 d~~gR~~~~V~~~g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~ 152 (841)
|+|||.+|+||.+|.+||++||++|||+++. . ..+...|.++|+.||++++|||+..
T Consensus 116 d~y~R~la~v~~~~~~v~~~lV~~G~A~~~~-~------~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 116 DRYGRLLAYVTVDGTDVNLELVKEGLARVYY-N------SEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred cCCCcEEEEEEECCEEHHHHHHhCCCEEEec-c------ccchHHHHHHHHHHHHcccCccCCC
Confidence 9999999999999999999999999999988 1 2346789999999999999999986
No 9
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.82 E-value=2.7e-20 Score=172.21 Aligned_cols=107 Identities=29% Similarity=0.497 Sum_probs=94.7
Q ss_pred EEEEEeecCCCCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEEccc-cCCCCcEEEEEEeCCccHHHHHHHcCCeEEEEe
Q 003181 42 TLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYA-VPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ 120 (841)
Q Consensus 42 ~VrL~gIdaPe~~~~~~~~ep~g~eAre~Lr~ll~Gk~V~~~~~~~-~d~~gR~~~~V~~~g~~vn~~Lv~~G~A~v~~~ 120 (841)
+|||+||||||..+.+...+|||.+|++||++++.++.|.+.++.. .|++||.+|+||+++.+||+.||++|||+++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 6999999999998877789999999999999999999999988754 689999999999999999999999999999886
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHhCCCCcCC
Q 003181 121 GSQKGEASPFLAELLRLEEQAKLQGLGRWSK 151 (841)
Q Consensus 121 ~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~ 151 (841)
.. ....++..|..||++||++++|||++
T Consensus 81 ~~---~~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YP---SNSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BT---TBCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cC---CCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 53 24567899999999999999999984
No 10
>PRK06518 hypothetical protein; Provisional
Probab=99.82 E-value=3.2e-19 Score=178.77 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=109.6
Q ss_pred cCCCcceeeEEEecCCCEEEEEEcC--CceEEEEEEeeeeCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhh
Q 003181 183 NKGRPMQGIVEQARDGSTLRVYLLP--EFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAA 260 (841)
Q Consensus 183 ~~~~~~~~~Ve~V~dG~t~~v~~~~--~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 260 (841)
.....+.|.| .|+|||||+|.... .....+|||+|||+||...... .
T Consensus 19 ~~~~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c~----------~-------------------- 67 (177)
T PRK06518 19 NNVVIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKAR----------L-------------------- 67 (177)
T ss_pred cccccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCccc----------C--------------------
Confidence 4567788988 79999999996321 1235799999999999865210 0
Q ss_pred hcccCCCCCCCchhHHHHHHHHHHhccCceEEEEEeeecCCCCEEEEEEecCCCchhhHHHHHHhcCcEEEeecccccch
Q 003181 261 STASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMME 340 (841)
Q Consensus 261 ~~~~~~~~~~~ep~a~eAk~f~~~~ll~r~V~i~~~~~D~yg~~~~~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~ 340 (841)
..+.+|||.+|+.|+..+++++.|++...+ |+|||++|+++.. |. ||+++||++|||++|....+..
T Consensus 68 -------~~~~wp~G~~A~~~L~~li~gk~V~~~~~~-D~ygR~lA~~~~~-g~---dln~~mV~~G~A~ay~~~~~~~- 134 (177)
T PRK06518 68 -------GDQEWPCGAVATAWLVTKTLNKWLSCRQAR-MENGVHYAQCFVD-GV---DIAALGLAEGMAVLSKDDHEDP- 134 (177)
T ss_pred -------CCCCCcHHHHHHHHHHHHHCCCeEEEEEec-ccCCCEEEEEEEC-CE---EHHHHHHhCCCEEEEeeccCCC-
Confidence 135799999999999999999999999877 9999999999984 43 6999999999999986533321
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcC
Q 003181 341 EDAKRRLKAADLQAKKTRLRMWTN 364 (841)
Q Consensus 341 ~~~~~~l~~AE~~Ak~~k~GiW~~ 364 (841)
....|..+|++||++++|||+.
T Consensus 135 --~~~~y~~aE~~AR~~k~GLW~~ 156 (177)
T PRK06518 135 --GPAQYASLEEKARKAYRGLWSS 156 (177)
T ss_pred --CHHHHHHHHHHHHHhCCCCCCC
Confidence 1247999999999999999984
No 11
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.77 E-value=1.2e-18 Score=161.20 Aligned_cols=106 Identities=29% Similarity=0.528 Sum_probs=87.8
Q ss_pred EEEEeeeeCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHhccCceEE
Q 003181 213 QVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVR 292 (841)
Q Consensus 213 ~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~a~eAk~f~~~~ll~r~V~ 292 (841)
+|||+||+||++.+. ..+.+|||.+|+.|++.+|++++|.
T Consensus 1 ~vrL~gI~~Pe~~~~----------------------------------------~~~~~~~~~~A~~~l~~~l~~~~~~ 40 (108)
T PF00565_consen 1 KVRLAGIDAPETNQP----------------------------------------DKPEEPYGQEAKEFLRELLLGRQVV 40 (108)
T ss_dssp EEEETTEE-SSSTCC----------------------------------------CTTTSTTHHHHHHHHHHHHHTCSCE
T ss_pred CEEEEEEECCCCCCC----------------------------------------CCccchHHHHHHHHHHHHhCCCeee
Confidence 699999999998763 1358999999999999999999999
Q ss_pred EEEeee--cCCCCEEEEEEecCCCchhhHHHHHHhcCcEEEeecccccchHHHHHHHHHHHHHHHHhcccCCcC
Q 003181 293 IVLEGV--DKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTN 364 (841)
Q Consensus 293 i~~~~~--D~yg~~~~~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GiW~~ 364 (841)
+.+.+. |++||++|+|+++ + .|||++||++|||+++....... .....|.+||++||++|+|||++
T Consensus 41 ~~~~~~~~d~~gr~~~~v~~~-~---~~in~~Ll~~GlA~v~~~~~~~~--~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 41 VEVDDIKQDKYGRLLAYVYVD-G---EDINEELLEEGLARVYRRYPSNS--EYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp EEEEESSBSTTSCEEEEEEET-T---EEHHHHHHHTTSSEE-CGBTTBC--TTHHHHHHHHHHHHHTT-GGGCT
T ss_pred ecccccCCCCCCceeEEEEEe-c---hhhhHHHHhCCeEEEEEecCCCc--HHHHHHHHHHHHHHHhCcCCCCC
Confidence 999877 9999999999997 3 35999999999999997433211 22358999999999999999975
No 12
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.71 E-value=6.5e-17 Score=165.80 Aligned_cols=129 Identities=30% Similarity=0.418 Sum_probs=109.4
Q ss_pred ceeeEEEecCCCEEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCC
Q 003181 188 MQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQ 267 (841)
Q Consensus 188 ~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (841)
..+.|.+|.|||||.+...+ .+.++|||+|||+||..+.. .
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~-~~~~~iRl~gIdaPe~~~~~-----------~--------------------------- 82 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG-GQAVKIRLAGIDAPETKQTC-----------A--------------------------- 82 (192)
T ss_pred CCCceEEecCCCeEEEecCC-CceeEEEEeccCCCcccccC-----------C---------------------------
Confidence 67889999999999998654 46789999999999987521 0
Q ss_pred CCCCchhHHHHHHHHHHhccC-ceEEEEEee-ecCCCCEEEEEEecCCCchhhHHHHHHhcCcEEEeecccccchHHHHH
Q 003181 268 QSTDEPFALDAKYFTEMRVLN-REVRIVLEG-VDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 345 (841)
Q Consensus 268 ~~~~ep~a~eAk~f~~~~ll~-r~V~i~~~~-~D~yg~~~~~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~ 345 (841)
....+|||.+|+.|++.+|++ +.|++.+.. .|+|||++|+|+ .+|. |++.+||++|||+++. +. ....
T Consensus 83 ~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~d~y~R~la~v~-~~~~---~v~~~lV~~G~A~~~~---~~---~~~~ 152 (192)
T COG1525 83 GGKSQPCGEEAREFLRNLLLGRRTVECDLADRKDRYGRLLAYVT-VDGT---DVNLELVKEGLARVYY---NS---EYGG 152 (192)
T ss_pred cccccchHHHHHHHHHHHhcCCceEEEecCCcccCCCcEEEEEE-ECCE---EHHHHHHhCCCEEEec---cc---cchH
Confidence 135799999999999999996 888888888 999999999999 4554 6999999999999997 11 1224
Q ss_pred HHHHHHHHHHHhcccCCcCC
Q 003181 346 RLKAADLQAKKTRLRMWTNY 365 (841)
Q Consensus 346 ~l~~AE~~Ak~~k~GiW~~~ 365 (841)
.|.+||+.||.+++|||+..
T Consensus 153 ~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 153 EYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred HHHHHHHHHHHcccCccCCC
Confidence 89999999999999999985
No 13
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=98.72 E-value=5.4e-08 Score=90.78 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=60.0
Q ss_pred cccEEEEEEEEEeeCCeEEEEecC-chhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 760 QKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 760 ~g~~~~v~Vs~V~s~~~f~iQ~~~-~~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
.++.+.++||+|.++++||++..+ ..++++|+++|..++..... .....+.+|..|++.++.|+.||||+|....++
T Consensus 2 ~~~~~~v~It~v~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~Ra~I~~~~~~ 79 (121)
T PF00567_consen 2 VGKTFEVYITHVDSPGEFYVQPDSADKAYEKLQEELQDYYENNPK-SPSPESNPGEGCLCVVSEDGRWYRAVITVDIDE 79 (121)
T ss_dssp ---EEEEEEEEECTTSEEEEEECCCHHHHHHHHHHHHHHHHHS-C-TTCST--TTEEEEEEETTTSEEEEEEEEEEECT
T ss_pred CCCEEEEEEEEEecCCEEEEEEcCCHHHHHHHHHHHHHHHhcccc-cCccccccCCEEEEEEecCCceeeEEEEEeccc
Confidence 367899999999999999997776 48999999999999877544 223567799999999999999999999444443
No 14
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=97.97 E-value=7.4e-06 Score=64.60 Aligned_cols=26 Identities=38% Similarity=0.736 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCcEeeEEEeeEcCCC
Q 003181 813 GEIVLAQFSADNSWNRAMDNCLLSSS 838 (841)
Q Consensus 813 G~~c~A~fs~D~~WYRAkV~~v~~~~ 838 (841)
|++|+|+|++|+.||||+|+++..+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~ 26 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDG 26 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCC
Confidence 79999999999999999999998543
No 15
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.77 E-value=3.4e-05 Score=63.09 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=26.0
Q ss_pred CCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 809 NPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
.|++|++|+|+| .|+.||||+|+++.++
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~~~ 29 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVDGE 29 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEECCC
Confidence 488999999999 8999999999999874
No 16
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.51 E-value=0.0042 Score=51.61 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=26.6
Q ss_pred CCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 809 NPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
..++|+.|-|.|++|+.||+|+|+++.++
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~ 30 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLGD 30 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECCC
Confidence 36899999999999999999999999874
No 17
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=94.86 E-value=0.027 Score=60.88 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
..-++||.|.|.||+||+||-|+|.+|..+
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~ 96 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEE 96 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETT
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCC
Confidence 467899999999999999999999999864
No 18
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=85.74 E-value=0.96 Score=36.88 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 810 PKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 810 pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
+++|+.|.+.+ .++.||.|+|+++...
T Consensus 1 ~~vG~~v~~~~-~~~~~y~A~I~~~r~~ 27 (55)
T PF11717_consen 1 FEVGEKVLCKY-KDGQWYEAKILDIREK 27 (55)
T ss_dssp --TTEEEEEEE-TTTEEEEEEEEEEEEC
T ss_pred CCcCCEEEEEE-CCCcEEEEEEEEEEec
Confidence 36899999999 6999999999998643
No 19
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=80.06 E-value=1.4 Score=46.04 Aligned_cols=28 Identities=29% Similarity=0.213 Sum_probs=25.7
Q ss_pred CCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 809 NPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
-.++|+-|.|.|++|+.||-|.|..+..
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita 117 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITA 117 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccC
Confidence 5789999999999999999999998765
No 20
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=78.53 E-value=3.5 Score=33.69 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=22.0
Q ss_pred CCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 809 NPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
....|+.|-++...++.||.|+|+++...
T Consensus 5 k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~ 33 (55)
T PF09465_consen 5 KFAIGEVVMVRWPGSSLYYEGKVLSYDSK 33 (55)
T ss_dssp SS-SS-EEEEE-TTTS-EEEEEEEEEETT
T ss_pred cccCCCEEEEECCCCCcEEEEEEEEeccc
Confidence 45689999999999999999999997653
No 21
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=72.22 E-value=9.4 Score=40.70 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=43.8
Q ss_pred ccEEEEEEEEEeeCCeEEEEecCc--hhHHHHHHH----HHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEeeE
Q 003181 761 KEVLKVVVTEILGGGKFYVQQVGD--QKVASVQQQ----LASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCL 834 (841)
Q Consensus 761 g~~~~v~Vs~V~s~~~f~iQ~~~~--~~L~~L~~~----l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~v 834 (841)
|+.+.+.|..+.+.++.=|...+. .+++..... |..++..--|. ....+.+|.+|+|.|.+--++|||.|.+-
T Consensus 145 g~WIlaeVv~~~~~~~ye~ev~D~Epk~d~~g~r~~~yklp~~~~~p~p~-p~~~fpp~~~VLA~YP~TTcFY~aiVh~t 223 (264)
T KOG3038|consen 145 GDWILAEVVKVSSETRYEFEVVDPEPKKDEVGNRGQLYKLPRWKLNPIPP-PTALFPPGTIVLAVYPGTTCFYKAIVHST 223 (264)
T ss_pred CCEEEEEEEEEecCCceEeEecCCCccccccccccceecccHhhcCCCCC-CccCCCCCCEEEEEcCCcceeeeeEeecC
Confidence 556666666666655433444432 233333221 22333321111 23557789999999999999999999875
Q ss_pred c
Q 003181 835 L 835 (841)
Q Consensus 835 ~ 835 (841)
-
T Consensus 224 p 224 (264)
T KOG3038|consen 224 P 224 (264)
T ss_pred C
Confidence 4
No 22
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=64.50 E-value=9.8 Score=32.33 Aligned_cols=28 Identities=25% Similarity=0.150 Sum_probs=19.8
Q ss_pred CCCCCeEEEEECCC---CcEeeEEEeeEcCC
Q 003181 810 PKKGEIVLAQFSAD---NSWNRAMDNCLLSS 837 (841)
Q Consensus 810 pk~G~~c~A~fs~D---~~WYRAkV~~v~~~ 837 (841)
+++|+.|=...-++ +.||+|+|++..++
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~ 31 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGD 31 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCC
Confidence 46899998887664 46999999999877
No 23
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=55.20 E-value=30 Score=40.78 Aligned_cols=80 Identities=11% Similarity=-0.031 Sum_probs=54.3
Q ss_pred cCCcccEEEEEEEEEeeCCeEEEEecCc---hhHHHHHHHHHHhhccCCCCCCC-CCCCCCCeEEEEECCCCcEeeEEEe
Q 003181 757 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGA-FNPKKGEIVLAQFSADNSWNRAMDN 832 (841)
Q Consensus 757 ~~~~g~~~~v~Vs~V~s~~~f~iQ~~~~---~~L~~L~~~l~~~~~~~~~~~~~-~~pk~G~~c~A~fs~D~~WYRAkV~ 832 (841)
.++.+-.+.+.|..+.+.++||+|...- ..|-.|...|..+|......+.. .....+-+|+|. .+++.|.||.+.
T Consensus 400 ~fpd~i~cev~V~s~i~a~hlf~pq~tip~F~aLrsldqwm~l~y~eq~t~pelP~P~~~t~~sAAp-~g~~awpra~lv 478 (608)
T KOG2279|consen 400 DFPDNIDCEVKVLSAIRADHLFLPQQTIPCFLALRSLDQWMELAYDEQLTHPELPKPLVATISSAAP-TGISAWPRAYLV 478 (608)
T ss_pred EcCCCceEEeeeehhhcccceeeccccchhhhhhhhHHHHHHHHhhcccCCcCCCcchhhceeeecc-cCCCCccceEEE
Confidence 3455678999999999999999999763 35566666666666532222211 222346666666 689999999998
Q ss_pred eEcCC
Q 003181 833 CLLSS 837 (841)
Q Consensus 833 ~v~~~ 837 (841)
.-.+.
T Consensus 479 d~~de 483 (608)
T KOG2279|consen 479 DTSDE 483 (608)
T ss_pred eccCc
Confidence 76543
No 24
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=50.35 E-value=24 Score=33.89 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=45.6
Q ss_pred cccEEEEEEEEEeeCCeEEEEecCchhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCC-cEeeEEEee
Q 003181 760 QKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN-SWNRAMDNC 833 (841)
Q Consensus 760 ~g~~~~v~Vs~V~s~~~f~iQ~~~~~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~-~WYRAkV~~ 833 (841)
.|-++.++|....+.+.|.+++.++..-......+-.+.- . .....++||.|+|.-..++ .|+-|+|+.
T Consensus 11 DG~YY~GtV~~~~~~~~~lV~f~~~~~~~v~~~~iI~~~~----~-~~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~ 80 (124)
T PF15057_consen 11 DGFYYPGTVKKCVSSGQFLVEFDDGDTQEVPISDIIALSD----A-MRHSLQVGDKVLAPWEPDDCRYGPGTVIA 80 (124)
T ss_pred CCcEEeEEEEEccCCCEEEEEECCCCEEEeChHHeEEccC----c-ccCcCCCCCEEEEecCcCCCEEeCEEEEE
Confidence 3779999999999999999999543211112222222211 1 1245789999999965444 488899996
No 25
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=47.74 E-value=21 Score=34.53 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=43.6
Q ss_pred ccEEEEEEEEEeeCC-eEEEEecCchhHHHHHHHHHHhhccC-----CCC------CCCCCCCCCCeEEEEECCCCcEee
Q 003181 761 KEVLKVVVTEILGGG-KFYVQQVGDQKVASVQQQLASLNLQE-----APV------IGAFNPKKGEIVLAQFSADNSWNR 828 (841)
Q Consensus 761 g~~~~v~Vs~V~s~~-~f~iQ~~~~~~L~~L~~~l~~~~~~~-----~~~------~~~~~pk~G~~c~A~fs~D~~WYR 828 (841)
+..+-+.|..+.+.+ ++-|+..+... ....|.... .|. .......+|+.|+|.|.+--++||
T Consensus 17 ~~WIla~Vv~~~~~~~rYeV~D~d~~~------~~~~~~~~~~~iIPLP~~~~~~~~~~~~f~~g~~VLAlYP~TT~FY~ 90 (130)
T PF07039_consen 17 EEWILAEVVKYNSDGNRYEVEDPDPEE------EKKRYKLSRKQIIPLPKKAPPDTDPLAEFPKGTKVLALYPDTTCFYP 90 (130)
T ss_dssp CEEEEEEEEEEETTTTEEEEEETTTCT------TTEEEEEEGGGEEEE-SB--TTT-GGGS--TT-EEEEE-TTSSEEEE
T ss_pred CCEEEEEEEEEeCCCCEEEEecCCCCC------CCceEEeCHHHEEECCCccCCCCCchhhCCCCCEEEEECCCCceEEE
Confidence 678889999988766 88899987432 000222110 111 112457799999999999999999
Q ss_pred EEEeeE
Q 003181 829 AMDNCL 834 (841)
Q Consensus 829 AkV~~v 834 (841)
|.|.+.
T Consensus 91 A~V~~~ 96 (130)
T PF07039_consen 91 ATVVSP 96 (130)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999987
No 26
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=39.37 E-value=40 Score=29.49 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=24.2
Q ss_pred CCCCCCeEEEEECC------CCcEeeEEEeeEcC
Q 003181 809 NPKKGEIVLAQFSA------DNSWNRAMDNCLLS 836 (841)
Q Consensus 809 ~pk~G~~c~A~fs~------D~~WYRAkV~~v~~ 836 (841)
..|+||.|+.+-.. |+.|+=+.|+.+.+
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~g 38 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEG 38 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEEEEEEEEec
Confidence 47899999998765 67899999999987
No 27
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=37.41 E-value=52 Score=35.27 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCCCCCCCeEEEEE---CCCCcEeeEEEeeEcCCC
Q 003181 807 AFNPKKGEIVLAQF---SADNSWNRAMDNCLLSSS 838 (841)
Q Consensus 807 ~~~pk~G~~c~A~f---s~D~~WYRAkV~~v~~~~ 838 (841)
.+.+.+|+-|+|++ |+|+.|-=|.|+++.+++
T Consensus 125 ~~~~~~gd~VAa~v~~~~~dg~WIlaeVv~~~~~~ 159 (264)
T KOG3038|consen 125 DYVLLKGDEVAARVKAVSEDGDWILAEVVKVSSET 159 (264)
T ss_pred CccccCCceeeeeeeeccCCCCEEEEEEEEEecCC
Confidence 47788999999998 589999999999998876
No 28
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=34.09 E-value=30 Score=35.49 Aligned_cols=29 Identities=21% Similarity=0.077 Sum_probs=26.3
Q ss_pred CCCCCCCCeEEEEECCCCcEeeEEEeeEc
Q 003181 807 AFNPKKGEIVLAQFSADNSWNRAMDNCLL 835 (841)
Q Consensus 807 ~~~pk~G~~c~A~fs~D~~WYRAkV~~v~ 835 (841)
....|+|+.|-|.|++|++.|-|.|..+.
T Consensus 65 ~~~wKVgdkc~A~Y~e~g~~ypatidsi~ 93 (218)
T KOG4327|consen 65 LQQWKVGDKCSAIYSEDGCIYPATIDSID 93 (218)
T ss_pred hhhheecceeeeeeecCcccccceecccc
Confidence 36789999999999999999999998876
No 29
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=31.40 E-value=52 Score=38.33 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=26.2
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
..+.+|+.|.|+.++|+.||.|+|+++..
T Consensus 52 ~~~~VGekVla~~~~Dg~~~~A~VI~~R~ 80 (450)
T PLN00104 52 LPLEVGTRVMCRWRFDGKYHPVKVIERRR 80 (450)
T ss_pred ceeccCCEEEEEECCCCCEEEEEEEEEec
Confidence 45779999999999999999999999875
No 30
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=30.21 E-value=66 Score=33.45 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=38.6
Q ss_pred eEEEEEeecCCCCCCCCCCCCh-hHHHHHHHHHHhcC----CCEEEEEEccccCCCCcEE
Q 003181 41 KTLTLSSIITPRLARRGGLDEP-FAWDSREFLRKLCI----GKEVTFRVDYAVPNIGREF 95 (841)
Q Consensus 41 ~~VrL~gIdaPe~~~~~~~~ep-~g~eAre~Lr~ll~----Gk~V~~~~~~~~d~~gR~~ 95 (841)
-+.|+.||..|-+-...++.-- -+|+||.|..+++. ...|.+.+. .++||.-
T Consensus 80 Pt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaIN---s~~gRtQ 136 (252)
T COG2134 80 PTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAIN---SKNGRTQ 136 (252)
T ss_pred eeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEec---CccCccc
Confidence 3789999999999765555533 39999999999984 356777765 3567763
No 31
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=24.96 E-value=1.2e+02 Score=24.66 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=31.0
Q ss_pred ccceeEEEEEEEeCcEEEEEeCCCCCCCccceEEEEeecccCC
Q 003181 377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP 419 (841)
Q Consensus 377 ~~~~~~~V~~V~sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~p 419 (841)
+..+.|+|++|..++.+.|...+. ....+..+..+.||.-
T Consensus 17 ~~W~~a~V~~~~~~~~~~V~~~~~---~~~~~e~v~~~~LRp~ 56 (61)
T smart00743 17 DSWWEAVVTKVLGDGKYLVRYLTE---SEPLKETVDWSDLRPH 56 (61)
T ss_pred CEEEEEEEEEECCCCEEEEEECCC---CcccEEEEeHHHcccC
Confidence 457899999999989999999661 1234778888888863
No 32
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=20.41 E-value=1.9e+02 Score=26.19 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=22.7
Q ss_pred cceeeEEEecCCCEEEEEEcCCceEEEEEEee
Q 003181 187 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 218 (841)
Q Consensus 187 ~~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~G 218 (841)
.+.|+|+.+.-++.|+|.|.. +..+.-.++|
T Consensus 8 e~~G~V~e~Lp~~~frV~Len-G~~vla~isG 38 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLEN-GVEVGAYASG 38 (87)
T ss_pred EEEEEEEEECCCCEEEEEeCC-CCEEEEEecc
Confidence 468999999999999999864 3334444443
Done!