Query 003181
Match_columns 841
No_of_seqs 429 out of 2302
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 100.0 2.4E-63 8.1E-68 584.7 42.4 394 377-837 22-438 (570)
2 3bdl_A Staphylococcal nuclease 100.0 7.2E-64 2.5E-68 589.1 35.0 519 7-735 20-569 (570)
3 4eqp_A Thermonuclease; staphyl 99.9 1.7E-27 5.9E-32 230.9 14.0 133 6-154 4-139 (143)
4 4eqp_A Thermonuclease; staphyl 99.9 1.9E-22 6.6E-27 195.5 14.7 129 616-747 8-140 (143)
5 2wac_A CG7008-PA; unknown func 99.5 3.5E-14 1.2E-18 146.5 14.2 132 8-151 65-216 (218)
6 2wac_A CG7008-PA; unknown func 99.5 1.8E-13 6.3E-18 141.1 13.3 103 640-744 112-217 (218)
7 4b9w_A TDRD1, tudor domain-con 99.5 2.1E-13 7.3E-18 139.4 12.7 80 757-838 12-94 (201)
8 4b9x_A TDRD1, tudor domain-con 99.4 4.2E-13 1.4E-17 139.7 12.6 80 757-838 12-94 (226)
9 3ntk_A Maternal protein tudor; 99.4 8.8E-13 3E-17 131.2 11.3 74 762-838 2-76 (169)
10 2hqx_A P100 CO-activator tudor 99.3 1.1E-12 3.9E-17 138.0 4.8 135 8-153 78-233 (246)
11 2hqx_A P100 CO-activator tudor 99.2 4.8E-12 1.6E-16 133.2 3.5 106 640-747 128-235 (246)
12 3fdr_A Tudor and KH domain-con 99.0 4.1E-10 1.4E-14 101.0 7.8 53 784-838 4-56 (94)
13 2eqk_A Tudor domain-containing 98.8 1.1E-09 3.7E-14 94.6 2.6 49 790-840 4-52 (85)
14 2diq_A Tudor and KH domain-con 98.8 3.8E-09 1.3E-13 97.4 5.8 51 785-837 10-60 (110)
15 4a4f_A SurviVal of motor neuro 98.6 3E-08 1E-12 82.4 5.7 31 807-837 6-36 (64)
16 3s6w_A Tudor domain-containing 98.5 5.7E-08 2E-12 77.8 4.4 28 810-837 2-29 (54)
17 3pnw_C Tudor domain-containing 98.5 8.7E-08 3E-12 82.5 5.2 30 808-837 16-45 (77)
18 1mhn_A SurviVal motor neuron p 98.4 1.7E-07 5.7E-12 76.6 5.0 28 809-836 3-30 (59)
19 2d9t_A Tudor domain-containing 98.4 1.6E-07 5.6E-12 81.0 5.2 30 807-836 7-36 (78)
20 1g5v_A SurviVal motor neuron p 98.4 1.5E-07 5E-12 82.9 4.9 29 808-836 9-37 (88)
21 2equ_A PHD finger protein 20-l 98.1 3.4E-06 1.2E-10 71.8 5.5 31 807-838 7-37 (74)
22 4b9x_A TDRD1, tudor domain-con 97.9 7.8E-06 2.7E-10 84.7 5.7 118 562-712 79-200 (226)
23 4b9w_A TDRD1, tudor domain-con 97.9 1.1E-05 3.6E-10 82.2 5.5 115 563-710 80-198 (201)
24 2ldm_A Uncharacterized protein 97.0 3.2E-06 1.1E-10 72.8 0.0 30 808-838 5-34 (81)
25 3ntk_A Maternal protein tudor; 96.8 0.0012 4E-08 65.2 5.5 106 562-703 61-166 (169)
26 3qii_A PHD finger protein 20; 95.8 0.009 3.1E-07 51.7 4.6 31 807-838 19-49 (85)
27 3p8d_A Medulloblastoma antigen 95.6 0.013 4.4E-07 48.6 4.7 30 808-838 5-34 (67)
28 2eqj_A Metal-response element- 86.6 0.93 3.2E-05 37.1 5.0 29 808-837 12-40 (66)
29 2l8d_A Lamin-B receptor; DNA b 86.6 0.89 3E-05 36.9 4.8 30 808-837 8-37 (66)
30 3h8z_A FragIle X mental retard 82.9 1.7 5.7E-05 40.6 5.7 75 760-837 14-92 (128)
31 2dig_A Lamin-B receptor; tudor 81.5 2.7 9.3E-05 34.2 5.6 30 808-837 11-40 (68)
32 2lcc_A AT-rich interactive dom 73.4 2.3 7.9E-05 36.0 3.2 28 809-836 5-34 (76)
33 2f5k_A MORF-related gene 15 is 68.5 4.9 0.00017 35.9 4.4 26 808-835 21-46 (102)
34 2e5p_A Protein PHF1, PHD finge 68.0 6.7 0.00023 32.0 4.6 28 808-836 8-35 (68)
35 2ro0_A Histone acetyltransfera 65.7 6.2 0.00021 34.6 4.4 27 808-836 22-48 (92)
36 2eko_A Histone acetyltransfera 65.5 3.9 0.00013 35.5 3.0 29 808-836 8-39 (87)
37 2e5q_A PHD finger protein 19; 59.5 9.7 0.00033 30.6 4.0 31 806-837 4-34 (63)
38 4hcz_A PHD finger protein 1; p 58.2 14 0.00048 29.4 4.7 28 809-837 3-30 (58)
39 2rnz_A Histone acetyltransfera 58.1 6.8 0.00023 34.5 3.3 26 809-836 25-50 (94)
40 3m9q_A Protein MALE-specific l 51.7 16 0.00054 32.6 4.6 29 808-836 18-49 (101)
41 3m9p_A MALE-specific lethal 3 46.7 21 0.00072 32.3 4.6 28 808-836 18-49 (110)
42 3mea_A SAGA-associated factor 42.0 20 0.00068 35.3 4.0 68 761-835 62-142 (180)
43 2xk0_A Polycomb protein PCL; t 39.6 42 0.0014 27.6 4.8 32 808-840 14-45 (69)
44 2bud_A Males-absent on the fir 38.5 27 0.00092 30.5 3.9 25 812-837 17-41 (92)
45 2lrq_A Protein MRG15, NUA4 com 39.5 9 0.00031 33.1 0.0 27 808-836 11-37 (85)
46 3s6w_A Tudor domain-containing 32.2 52 0.0018 25.3 4.3 37 377-418 16-53 (54)
47 1mhn_A SurviVal motor neuron p 30.1 73 0.0025 25.0 4.9 38 377-419 18-56 (59)
48 2m0o_A PHD finger protein 1; t 25.8 45 0.0015 28.0 2.9 28 808-836 25-52 (79)
49 1g5v_A SurviVal motor neuron p 24.8 1.1E+02 0.0038 26.3 5.4 38 377-419 25-63 (88)
50 3kdf_A Replication protein A 1 24.5 94 0.0032 28.4 5.2 40 177-217 14-56 (121)
51 3ask_A E3 ubiquitin-protein li 23.4 72 0.0024 32.4 4.6 79 759-837 15-108 (226)
52 3pnw_C Tudor domain-containing 22.9 96 0.0033 25.9 4.6 37 377-418 32-69 (77)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.4e-63 Score=584.75 Aligned_cols=394 Identities=39% Similarity=0.625 Sum_probs=329.0
Q ss_pred ccceeEEEEEEEeCcEEEEEeCCCCCCCccceEEEEeecccCCCCC-CCCCCC-------cchhhHHHHHHHHHhhcCCc
Q 003181 377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIG-NPRKDE-------KPAAYAREAREFLRTRLIGR 448 (841)
Q Consensus 377 ~~~~~~~V~~V~sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~p~~~-~~~~~~-------~~~~~~~eareflR~~~iGk 448 (841)
.+.+.|+|++|++||||.|...++ ++++|+|++|+||++. +++++. .++||++|||||||++|+||
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~~~g------~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk 95 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKLNSG------DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK 95 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEECTTS------CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred CcEEEEEEEEEccCCEEEEECCCC------CEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCC
Confidence 368999999999999999985332 4899999999999984 222211 47899999999999999999
Q ss_pred EEEEEEeeeecccccccccccCCCCCCCCCCCCCCccccccCCCCCCCCccccccee-eeeeeEEecCCCCCCCCCchhh
Q 003181 449 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRI-IDFGSIFLLSPIKGEGDDASAV 527 (841)
Q Consensus 449 ~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 527 (841)
+|.+.++|.++.... .+ ..+... |.+++|++
T Consensus 96 ~V~~~~~~~~~~~~~--------------~~--------------------~~D~yg~R~la~v~~-------------- 127 (570)
T 3bdl_A 96 KVNVTVDYIRPASPA--------------TE--------------------TVPAFSERTCATVTI-------------- 127 (570)
T ss_dssp EEEEEEEEEESSCCC--------------SS--------------------CSSSSCCEEEEEEEE--------------
T ss_pred EEEEEEEeecccccc--------------cc--------------------ccCCCCceEEEEEcc--------------
Confidence 999999998764210 00 011223 66888887
Q ss_pred hccccCCCCCCcchhHHHHhcccceeeecC-CcccccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCcccccc
Q 003181 528 AQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR 606 (841)
Q Consensus 528 ~~~~~~~~~~g~nv~~~lv~~G~a~v~~~r-~~~~~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~ 606 (841)
+|.|||++||++|||.|.+|| .+++++..|+.|++||+.|+++++|+|+.+++++.+++|++ .+.++++
T Consensus 128 ---------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~-~~~~~~~ 197 (570)
T 3bdl_A 128 ---------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADIS-GDTQKAK 197 (570)
T ss_dssp ---------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECT-TCHHHHH
T ss_pred ---------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecC-CchHHHH
Confidence 468999999999999999987 55567888999999999999999999998776767799997 4788999
Q ss_pred ccccccccCCccceEEEEEecCCEEEEEecCCcceEEEEEeeecCCC----------CCcccHHHHHHHHHHHhcCceEE
Q 003181 607 DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG----------RNERYSNEALLLMRQKILQRDVE 676 (841)
Q Consensus 607 ~~l~~~~k~~~l~~~Ve~V~dGdtl~v~ip~~~~~i~v~LaGI~~P~----------~~e~~g~EA~~~l~~~ll~r~V~ 676 (841)
+|++++++.+++.|+|++|+|||||+|++|++++.++|||+||+||+ ..+|||.||++|++++|++|+|+
T Consensus 198 ~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~ 277 (570)
T 3bdl_A 198 QFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVE 277 (570)
T ss_dssp HHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCeEE
Confidence 99999988999999999999999999999888999999999999997 36799999999999999999999
Q ss_pred EEEEEEcCCCcEEEEEEeCCcchhHHHHHcCCeecccccCCCCCCchHHHHHHHHHHHhccccccccccCCcccc--cCc
Q 003181 677 IEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVS--NGA 754 (841)
Q Consensus 677 v~v~~~Dk~Gr~~g~v~~~~~~i~~~Ll~~GlA~v~~~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~~~~~--~~~ 754 (841)
|++.+.|+|||++|+||+++.||+..||++|||+++ +...+..+...|.+||++||++++|||+.+.++.... ...
T Consensus 278 ~~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~ 355 (570)
T 3bdl_A 278 VEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVL 355 (570)
T ss_dssp EEEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCC
T ss_pred EEEEeEcCCCCEEEEEEECCEEHHHHHHHcCCcEEE--ecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhccccc
Confidence 999999999999999999999999999999999996 3344556778899999999999999999876652211 001
Q ss_pred cccCCcccEEEEEEEEEeeCCeEEEEecCc-hhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEee
Q 003181 755 AVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNC 833 (841)
Q Consensus 755 ~~~~~~g~~~~v~Vs~V~s~~~f~iQ~~~~-~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~ 833 (841)
......+++++|+||+|.+|++||||..+. .+|++||++|..++.+..+.+..+.|++|++|+|+|+ |+.||||+|++
T Consensus 356 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~ 434 (570)
T 3bdl_A 356 EEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEK 434 (570)
T ss_dssp CCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEE
T ss_pred ccCCCCCcEEEEEEEEEECCCeEEEEECCcHHHHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEE
Confidence 111234678999999999999999999974 6799999999998876555544578999999999999 99999999999
Q ss_pred EcCC
Q 003181 834 LLSS 837 (841)
Q Consensus 834 v~~~ 837 (841)
+.++
T Consensus 435 v~~~ 438 (570)
T 3bdl_A 435 VESP 438 (570)
T ss_dssp EEET
T ss_pred EcCC
Confidence 9763
No 2
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=7.2e-64 Score=589.15 Aligned_cols=519 Identities=27% Similarity=0.353 Sum_probs=377.9
Q ss_pred CCCCeEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCCC----------CCChhHHHHHHHHHHhcC
Q 003181 7 AGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG----------LDEPFAWDSREFLRKLCI 76 (841)
Q Consensus 7 ~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrL~gIdaPe~~~~~~----------~~ep~g~eAre~Lr~ll~ 76 (841)
+....+.|+|++|+|||||+|.... | .+++|||+||||||+.++++ .++|||++||+|||++|+
T Consensus 20 ~~~~~~~~~V~~V~DGDTi~v~~~~----g--~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~ 93 (570)
T 3bdl_A 20 HMDKQFVAKVMQVLNADAIVVKLNS----G--DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLI 93 (570)
T ss_dssp -CCSEEEEEEEEEETTTEEEEECTT----S--CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHT
T ss_pred cCCcEEEEEEEEEccCCEEEEECCC----C--CEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhC
Confidence 4567889999999999999998642 2 67999999999999965432 479999999999999999
Q ss_pred CCEEEEEEcc---------ccCCCC-cEEEEEEeCCccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCC
Q 003181 77 GKEVTFRVDY---------AVPNIG-REFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGL 146 (841)
Q Consensus 77 Gk~V~~~~~~---------~~d~~g-R~~~~V~~~g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~ 146 (841)
||+|+|.+++ .+|+|| |.+|+||++|.|||++||++|||++++++....+++.+|++|.+||++||++++
T Consensus 94 gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~ 173 (570)
T 3bdl_A 94 GKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGK 173 (570)
T ss_dssp TCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEETTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEeeccccccccccCCCCceEEEEEccCCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCC
Confidence 9999999997 468999 999999999999999999999999987531112346678999999999999999
Q ss_pred CCcCCCCCCcccccccCCCCcCCCCchhhHHHhhh-hcCCCcceeeEEEecCCCEEEEEEcCCceEEEEEEeeeeCCCCC
Q 003181 147 GRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLD-ANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVA 225 (841)
Q Consensus 147 GiWs~~~~~~~~~~r~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~ 225 (841)
|||+.++.+.. .++++.+. ..++++|++ .++++++.|+|++|.|||||+|+++++++.++|||+||||||+.
T Consensus 174 GlW~~~~~~~~-~~~d~~~~------~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~ 246 (570)
T 3bdl_A 174 GLHSKKEVPIH-RVADISGD------TQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGA 246 (570)
T ss_dssp GGGCCSCCCCC-CCEECTTC------HHHHHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCC
T ss_pred CCCCCCCCCcc-eeeecCCc------hHHHHHHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCC
Confidence 99998654322 25666653 468899998 45799999999999999999999987888999999999999987
Q ss_pred CCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHhccCceEEEEEeeecCCCCEE
Q 003181 226 RRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLI 305 (841)
Q Consensus 226 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~a~eAk~f~~~~ll~r~V~i~~~~~D~yg~~~ 305 (841)
+.. .|. ..+.+|||.||+.|++.+|++|+|+|.+.+.|+|||++
T Consensus 247 ~~~-----------~~~-------------------------~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~D~ygR~l 290 (570)
T 3bdl_A 247 RNL-----------PGL-------------------------VQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFI 290 (570)
T ss_dssp EEE-----------TTE-------------------------EECCCTTHHHHHHHHHHHHTTCEEEEEEEEECTTSCEE
T ss_pred CCC-----------CCC-------------------------ccccChHHHHHHHHHHHHhcCCeEEEEEEeEcCCCCEE
Confidence 521 000 12478999999999999999999999999999999999
Q ss_pred EEEEecCCCchhhHHHHHHhcCcEEEeecccccchHHHHHHHHHHHHHHHHhcccCCcCCCCCCCCc-------cccccc
Q 003181 306 GSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNS-------KAIHDQ 378 (841)
Q Consensus 306 ~~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GiW~~~~~~~~~~-------~~~~~~ 378 (841)
|+||++ |. ||+++||++|||+++ ++..... ....|++||++||++++|||+.+.++.... .....+
T Consensus 291 a~v~~~-~~---~v~~~Lv~~GlA~~~-~~~~~~~--~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~~~~~~~~ 363 (570)
T 3bdl_A 291 GWLHID-GA---NLSVLLVEHALSKVH-FTAERSS--YYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSAS 363 (570)
T ss_dssp EEEEET-TE---EHHHHHHHTTSSEEC-GGGTTST--THHHHHHHHHHHHHHTCGGGC----------CCCCCCSSCCCC
T ss_pred EEEEEC-CE---EHHHHHHHcCCcEEE-ecCCCcc--hHHHHHHHHHHHHHhCCCCCcccccccchhcccccccCCCCCc
Confidence 999997 43 599999999999998 3322222 235899999999999999999987752110 111134
Q ss_pred ceeEEEEEEEeCcEEEEEeCCCCCCCccceEEEEeecccCCCCCCCCCCCcchhhHHHHHHHHHhhcCCcEEEEEEeeee
Q 003181 379 NFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSR 458 (841)
Q Consensus 379 ~~~~~V~~V~sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~p~~~~~~~~~~~~~~~~eareflR~~~iGk~v~~~~~y~~ 458 (841)
.+.+.|+.|.+...|.|+..+.. . ..+-+.-+-.+++.+.
T Consensus 364 ~~~V~Vt~V~sp~~Fyvq~~~~~------~--------------------~l~~l~~~l~~~~~~~-------------- 403 (570)
T 3bdl_A 364 YKPVFVTEITDDLHFYVQDVETG------T--------------------QLEKLMENMRNDIASH-------------- 403 (570)
T ss_dssp CEEEEEEEECTTSEEEEEEGGGH------H--------------------HHHHHHHHHHHHHHHS--------------
T ss_pred EEEEEEEEEECCCeEEEEECCcH------H--------------------HHHHHHHHHHHHHhcC--------------
Confidence 56888999999999988873210 0 0011111122222110
Q ss_pred cccccccccccCCCCCCCCCCCCCCccccccCCCCCCCCcccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCC
Q 003181 459 KVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAG 538 (841)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 538 (841)
.+. .+ ++.
T Consensus 404 -~~l---------------~~-------------------------------~~~------------------------- 411 (570)
T 3bdl_A 404 -PPV---------------EG-------------------------------SYA------------------------- 411 (570)
T ss_dssp -CCC---------------TT-------------------------------CCC-------------------------
T ss_pred -CCC---------------CC-------------------------------CcC-------------------------
Confidence 000 00 000
Q ss_pred cchhHHHHhcccceeeecCCcccccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCcc
Q 003181 539 VNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRI 618 (841)
Q Consensus 539 ~nv~~~lv~~G~a~v~~~r~~~~~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~k~~~l 618 (841)
...|...+.... +..|||+.|.... . .....+.|+|| ||.+ .++.. ..++|
T Consensus 412 -------~~~G~~c~a~~~----d~~wyRa~I~~v~----------~-~~~~~V~fvDy--Gn~e----~v~~~-~Lr~l 462 (570)
T 3bdl_A 412 -------PRRGEFCIAKFV----DGEWYRARVEKVE----------S-PAKIHVFYIDY--GNRE----VLPST-RLGTL 462 (570)
T ss_dssp -------CCTTCEEEEECT----TSCEEEEEEEEEE----------E-TTEEEEEETTT--CCEE----EECGG-GEECC
T ss_pred -------CCcCCEEEEEEC----CCCEEEEEEEEEc----------C-CCeEEEEEEeC--CCeE----EEEHH-HCccC
Confidence 001111122222 2468887776311 1 12234679999 7877 56654 55555
Q ss_pred ceEEEEEecCCEEEE-EecCCcceEEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC--
Q 003181 619 PAVVEYVLSGHRFKV-LIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-- 695 (841)
Q Consensus 619 ~~~Ve~V~dGdtl~v-~ip~~~~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~-- 695 (841)
+.. |.. .+|. +.+.|+|+||.+|. ...|..+|..+|++++.++.+.+.|...+ .|.+.+.|+..
T Consensus 463 ~~~---------f~~l~lP~--qA~~c~La~v~pp~-~~~w~~ea~~~f~~lv~~k~l~~~V~~~~-~~~~~V~L~~~~~ 529 (570)
T 3bdl_A 463 SPA---------FSTRVLPA--QATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLNVEHLS-AGCPHVTLQFADS 529 (570)
T ss_dssp CGG---------GSTTTSCC--CCEEEEETTEECCS-SHHHHHHHHHHHHHHHTTEEEEEEEEECC-SSSCEEEEEETTT
T ss_pred CHH---------HhcCCCCc--ceEEEEECCeEcCC-CCCCcHHHHHHHHHHhCCCEEEEEEEEEe-CCcEEEEEEECCC
Confidence 431 111 1377 45889999999876 67899999999999999999999999887 57888999985
Q ss_pred CcchhHHHHHcCCeecccccCCCCCCchHHHHHHHHHHHh
Q 003181 696 RTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKS 735 (841)
Q Consensus 696 ~~~i~~~Ll~~GlA~v~~~~~~~~~~~~~~l~~AE~~AK~ 735 (841)
+.+|+..|+++|||.........-......|.++|+.||.
T Consensus 530 ~~sIn~~Lv~~G~A~~~~~~~~~~~~~~~~l~~~q~~Ak~ 569 (570)
T 3bdl_A 530 KGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKS 569 (570)
T ss_dssp CCBHHHHHHHTTSSEECCCCSGGGHHHHHHHHHHHHTC--
T ss_pred CccHHHHHHHCCCeEcchhhhhhHHHHHHHHHHHHHHHhc
Confidence 5789999999999988521110012235678888888875
No 3
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.95 E-value=1.7e-27 Score=230.92 Aligned_cols=133 Identities=22% Similarity=0.223 Sum_probs=112.4
Q ss_pred CCCCCeEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCCCCCChhHHHHHHHHHHhcC-CCEEEEEE
Q 003181 6 AAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GKEVTFRV 84 (841)
Q Consensus 6 ~~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrL~gIdaPe~~~~~~~~ep~g~eAre~Lr~ll~-Gk~V~~~~ 84 (841)
...-..+.++|++|+|||||.|..++ ...+|||+||||||+ .||||.+|++||+++|. |+.|.|.+
T Consensus 4 ~~~~~~~~~~V~~V~DGDTi~v~~~g-------~~~~VRL~gIDaPE~------~q~~g~~A~~~l~~ll~~g~~V~~~~ 70 (143)
T 4eqp_A 4 TKKLHKEPATLIKAIDGDTVKLMYKG-------QPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKDEVEF 70 (143)
T ss_dssp ---CCEEEEEEEEECSSSEEEEEETT-------EEEEEEETTEECCCT------TSTTHHHHHHHHHHHHHHCSCEEEEC
T ss_pred CCCCceeeEEEEEEECCCEEEEEeCC-------cEEEEEEEeecCCCc------CCchHHHHHHHHHHHHhcCCeEEEEE
Confidence 34556788999999999999998752 468999999999997 68999999999999998 89999998
Q ss_pred c--cccCCCCcEEEEEEeCCccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCCCCcCCCCC
Q 003181 85 D--YAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPG 154 (841)
Q Consensus 85 ~--~~~d~~gR~~~~V~~~g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~~~ 154 (841)
+ ..+|+|||.+|+||++|.+||++||++|||+++..+. .+..+.+.|.+||++||++++|||+...|
T Consensus 71 d~~~~~D~ygR~la~v~~~g~~vn~~lv~~GlA~v~~~~~---~~~~~~~~~~~aE~~Ar~~k~GlW~~~~p 139 (143)
T 4eqp_A 71 DKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---GNNTHEQLLRKAEAQAKKEKLNIWSEDNA 139 (143)
T ss_dssp CSSCSBCTTSCEEEEEEETTEEHHHHHHHTTSSEECCCCT---TSCTTHHHHHHHHHHHHHTTCGGGC----
T ss_pred ccccccCCCCCEEEEEEECCchHHHHHHHCCCeEEEeecC---CCcchHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 6 3679999999999999999999999999999975543 22456788999999999999999998754
No 4
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.88 E-value=1.9e-22 Score=195.45 Aligned_cols=129 Identities=26% Similarity=0.401 Sum_probs=109.6
Q ss_pred CccceEEEEEecCCEEEEEecCCcceEEEEEeeecCCCCCcccHHHHHHHHHHHhc-CceEEEEEE---EEcCCCcEEEE
Q 003181 616 RRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKIL-QRDVEIEVE---TVDRTGTFLGS 691 (841)
Q Consensus 616 ~~l~~~Ve~V~dGdtl~v~ip~~~~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll-~r~V~v~v~---~~Dk~Gr~~g~ 691 (841)
...+++|.+|+|||||+|..+ +..++|||+||++|+..+|||.+|+.|++++|. ++.|+|+++ ..|+|||++++
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~~--g~~~~VRL~gIDaPE~~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~ 85 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMYK--GQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAY 85 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEET--TEEEEEEETTEECCCTTSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEE
T ss_pred ceeeEEEEEEECCCEEEEEeC--CcEEEEEEEeecCCCcCCchHHHHHHHHHHHHhcCCeEEEEEccccccCCCCCEEEE
Confidence 345799999999999999864 456899999999999999999999999999998 699999984 68999999999
Q ss_pred EEeCCcchhHHHHHcCCeecccccCCCCCCchHHHHHHHHHHHhccccccccccCC
Q 003181 692 LWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG 747 (841)
Q Consensus 692 v~~~~~~i~~~Ll~~GlA~v~~~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~ 747 (841)
||.++.+||.+||++|||+++..+.. ...+...|.+||++||.+++|||+...|+
T Consensus 86 v~~~g~~vn~~lv~~GlA~v~~~~~~-~~~~~~~~~~aE~~Ar~~k~GlW~~~~p~ 140 (143)
T 4eqp_A 86 IYADGKMVNEALVRQGLAKVAYVYKG-NNTHEQLLRKAEAQAKKEKLNIWSEDNAD 140 (143)
T ss_dssp EEETTEEHHHHHHHTTSSEECCCCTT-SCTTHHHHHHHHHHHHHTTCGGGC-----
T ss_pred EEECCchHHHHHHHCCCeEEEeecCC-CcchHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999998533332 33566789999999999999999987654
No 5
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=3.5e-14 Score=146.46 Aligned_cols=132 Identities=17% Similarity=0.309 Sum_probs=106.4
Q ss_pred CCCeEEEEEeEEccCCEEEEeeCCCCC-----------------CCCCCeeEEEEEeecCCCCCCCCCCCChhHHHHHHH
Q 003181 8 GGGWYRARVKAVPSGDSLVITALSNPN-----------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREF 70 (841)
Q Consensus 8 ~~~~~~~~V~~V~dGDTi~v~~~~~~~-----------------~g~~~~~~VrL~gIdaPe~~~~~~~~ep~g~eAre~ 70 (841)
...+++|+|.+|.+ |++.|...+.+. .-|+...++||+||++|+ +++|+.+|+++
T Consensus 65 d~~wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-------~~~w~~eA~~~ 136 (218)
T 2wac_A 65 DNQWYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-------DNEDKEEALRA 136 (218)
T ss_dssp TCCEEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-------SHHHHHHHHHH
T ss_pred CCeEEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-------CcchHHHHHHH
Confidence 46799999999987 888876442100 013456789999999998 57999999999
Q ss_pred HHHhcCCCEEEEEEccccCCCCc-EEEEEEe--CCccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCCC
Q 003181 71 LRKLCIGKEVTFRVDYAVPNIGR-EFGTVIL--GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLG 147 (841)
Q Consensus 71 Lr~ll~Gk~V~~~~~~~~d~~gR-~~~~V~~--~g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~G 147 (841)
|++++.|+.|.+.+.. +| +|| .+++++. ++.+||+.||++|||+++.... .....+..+|.+||++||++++|
T Consensus 137 l~~lv~~k~v~~~v~~-~d-~g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~--~~~~~~~~~~~~~e~~Ar~~r~G 212 (218)
T 2wac_A 137 FSEDVLNHKVQLNVEL-KV-TGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGE--RKLKELVDQYKAAQEAARVAHLA 212 (218)
T ss_dssp HHHHHBTCEEEEEEEE-CC-TTSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCC--GGGHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHhcCCEEEEEEEE-Ec-CCceEEEEEEeCCCCccHHHHHHHCCCcccccccc--hhHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999874 56 899 9999987 5889999999999999974321 01134567899999999999999
Q ss_pred CcCC
Q 003181 148 RWSK 151 (841)
Q Consensus 148 iWs~ 151 (841)
||+.
T Consensus 213 lW~~ 216 (218)
T 2wac_A 213 IWKY 216 (218)
T ss_dssp GGTT
T ss_pred Cccc
Confidence 9985
No 6
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1.8e-13 Score=141.09 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=87.1
Q ss_pred ceEEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCc-EEEEEEeC--CcchhHHHHHcCCeecccccC
Q 003181 640 CSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGT-FLGSLWES--RTNVAVILLEAGLAKLQTSFG 716 (841)
Q Consensus 640 ~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr-~~g~v~~~--~~~i~~~Ll~~GlA~v~~~~~ 716 (841)
..++|+|+||++|+ .++|+.+|..+|++++.++.|.+.+...| +|+ .++.|+.. +.+|+..||++|||+++....
T Consensus 112 ~a~~~~Lagv~~p~-~~~w~~eA~~~l~~lv~~k~v~~~v~~~d-~g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~ 189 (218)
T 2wac_A 112 YATEYALALVALPT-DNEDKEEALRAFSEDVLNHKVQLNVELKV-TGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGE 189 (218)
T ss_dssp SEEEEEETTEECCS-SHHHHHHHHHHHHHHHBTCEEEEEEEECC-TTSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCC
T ss_pred ceeEEEECCEECCC-CcchHHHHHHHHHHHhcCCEEEEEEEEEc-CCceEEEEEEeCCCCccHHHHHHHCCCcccccccc
Confidence 46799999999997 78999999999999999999999999998 899 99999984 789999999999999862111
Q ss_pred CCCCCchHHHHHHHHHHHhccccccccc
Q 003181 717 SDRIPDSHLLEQAEKSAKSQKLKIWENY 744 (841)
Q Consensus 717 ~~~~~~~~~l~~AE~~AK~~k~GlW~~~ 744 (841)
.........|.++|++||.+|+|||+..
T Consensus 190 ~~~~~~~~~~~~~e~~Ar~~r~GlW~~g 217 (218)
T 2wac_A 190 RKLKELVDQYKAAQEAARVAHLAIWKYG 217 (218)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTCGGGTTC
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 0011234679999999999999999863
No 7
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=99.47 E-value=2.1e-13 Score=139.36 Aligned_cols=80 Identities=33% Similarity=0.494 Sum_probs=69.6
Q ss_pred cCCcccEEEEEEEEEeeCCeEEEEecCc---hhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEee
Q 003181 757 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNC 833 (841)
Q Consensus 757 ~~~~g~~~~v~Vs~V~s~~~f~iQ~~~~---~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~ 833 (841)
++..++.++|+||+|.+|++||||..+. .+|++||++|+.|+.+..+. .+.|++|++|+|+|++|+.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~wyRa~V~~ 89 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKE 89 (201)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCC--CCCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEECCCchHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCEEEEEECCCCeEEEEEEEE
Confidence 3556889999999999999999999863 58999999999998765433 467999999999999999999999999
Q ss_pred EcCCC
Q 003181 834 LLSSS 838 (841)
Q Consensus 834 v~~~~ 838 (841)
+.+++
T Consensus 90 ~~~~~ 94 (201)
T 4b9w_A 90 ILPSG 94 (201)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 97664
No 8
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=99.44 E-value=4.2e-13 Score=139.70 Aligned_cols=80 Identities=33% Similarity=0.494 Sum_probs=68.7
Q ss_pred cCCcccEEEEEEEEEeeCCeEEEEecCc---hhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEee
Q 003181 757 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNC 833 (841)
Q Consensus 757 ~~~~g~~~~v~Vs~V~s~~~f~iQ~~~~---~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~ 833 (841)
++..+++++|+||+|.+|++||||..+. .+|++||+.|..|+.+..+. .+.|++|++|+|+|++|+.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~WyRa~V~~ 89 (226)
T 4b9x_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKE 89 (226)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC----CCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEEcCCchHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCEEEEEECCCCeEEEEEEEE
Confidence 3556899999999999999999999863 58999999999998764332 367999999999999999999999999
Q ss_pred EcCCC
Q 003181 834 LLSSS 838 (841)
Q Consensus 834 v~~~~ 838 (841)
+.+++
T Consensus 90 ~~~~~ 94 (226)
T 4b9x_A 90 ILPSG 94 (226)
T ss_dssp ECSSS
T ss_pred ECCCC
Confidence 97664
No 9
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=99.40 E-value=8.8e-13 Score=131.17 Aligned_cols=74 Identities=27% Similarity=0.379 Sum_probs=64.4
Q ss_pred cEEEEEEEEEeeCCeEEEEecCc-hhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEeeEcCCC
Q 003181 762 EVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSSS 838 (841)
Q Consensus 762 ~~~~v~Vs~V~s~~~f~iQ~~~~-~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~~ 838 (841)
++++|+||+|.+|++||+|..++ ..|++||+.|+.++... |. ...|++|++|+|+|++|+.||||+|+++.+++
T Consensus 2 e~~~V~Vt~v~~p~~F~vq~~~~~~~L~~L~~~l~~~~~~~-p~--~~~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~ 76 (169)
T 3ntk_A 2 ELHNCVVVQFDGPMSFYVQMESDVPALEQMTDKLLDAEQDL-PA--FSDLKEGALCVAQFPEDEVFYRAQIRKVLDDG 76 (169)
T ss_dssp CCEEEEEEEEEETTEEEEEEGGGHHHHHHHHHHHHHHGGGC-CB--CCCCCTTCEEEEEETTTTEEEEEEEEEECSTT
T ss_pred cceEEEEEEEeCCCEEEEEECCCHHHHHHHHHHHHHHHhcC-CC--CCCCCCCCEEEEEECCCCcEEEEEEEEECCCC
Confidence 46899999999999999999864 78999999999987532 22 25799999999999999999999999998765
No 10
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.29 E-value=1.1e-12 Score=138.04 Aligned_cols=135 Identities=21% Similarity=0.298 Sum_probs=22.0
Q ss_pred CCCeEEEEEeEEccCCEEEEeeCCCCC-------------------CCCCCeeEEEEEeecCCCCCCCCCCCChhHHHHH
Q 003181 8 GGGWYRARVKAVPSGDSLVITALSNPN-------------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSR 68 (841)
Q Consensus 8 ~~~~~~~~V~~V~dGDTi~v~~~~~~~-------------------~g~~~~~~VrL~gIdaPe~~~~~~~~ep~g~eAr 68 (841)
...+++|+|.+|.+++++.|..-+.+. .-|+...++||++|++|+. ..|+.+|.
T Consensus 78 d~~wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~-------~~~~~eA~ 150 (246)
T 2hqx_A 78 DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD-------DDARTDAV 150 (246)
T ss_dssp TSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC----------------------------
T ss_pred CCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCCC-------ccchHHHH
Confidence 467999999999988898886432100 0144566889999998873 46999999
Q ss_pred HHHHHhcCCCEEEEEEccccCCCCcEEEEEEe--CCccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCC
Q 003181 69 EFLRKLCIGKEVTFRVDYAVPNIGREFGTVIL--GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGL 146 (841)
Q Consensus 69 e~Lr~ll~Gk~V~~~~~~~~d~~gR~~~~V~~--~g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~ 146 (841)
++|.+++.|+.|.+.++. ++ .||.+++|+. ++.+||++||++|||+++..+.. ....+...|.+||++||++++
T Consensus 151 ~~l~~lv~~k~v~~~v~~-~d-~g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~~--~~~~~~~~~~~~e~~Ar~~r~ 226 (246)
T 2hqx_A 151 DSVVRDIQNTQCLLNVEH-LS-AGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEK--QFQKVITEYLNAQESAKSARL 226 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCEEEEEEEE-ec-CCeEEEEEEeCCCCccHHHHHHHCCCEEecccchh--hHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988874 34 4888888888 57899999999999999875531 112345789999999999999
Q ss_pred CCcCCCC
Q 003181 147 GRWSKVP 153 (841)
Q Consensus 147 GiWs~~~ 153 (841)
|||+..+
T Consensus 227 GlW~~gd 233 (246)
T 2hqx_A 227 NLWRYGD 233 (246)
T ss_dssp -------
T ss_pred CcccCCC
Confidence 9998653
No 11
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.19 E-value=4.8e-12 Score=133.22 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=1.0
Q ss_pred ceEEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEe--CCcchhHHHHHcCCeecccccCC
Q 003181 640 CSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWE--SRTNVAVILLEAGLAKLQTSFGS 717 (841)
Q Consensus 640 ~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~--~~~~i~~~Ll~~GlA~v~~~~~~ 717 (841)
+.+.|+|+||++|+. ..|+.+|..++.++++++.|.+.+...|. |+.++.|+. ++.+|+..||++|||+++..+..
T Consensus 128 ~a~~~~L~~v~~p~~-~~~~~eA~~~l~~lv~~k~v~~~v~~~d~-g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~~ 205 (246)
T 2hqx_A 128 QATEYAFAFIQVPQD-DDARTDAVDSVVRDIQNTQCLLNVEHLSA-GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEK 205 (246)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred hhhhhhhhceecCCC-ccchHHHHHHHHHHhcCCEEEEEEEEecC-CeEEEEEEeCCCCccHHHHHHHCCCEEecccchh
Confidence 457899999999874 57999999999999999999999988774 888889988 46799999999999999753322
Q ss_pred CCCCchHHHHHHHHHHHhccccccccccCC
Q 003181 718 DRIPDSHLLEQAEKSAKSQKLKIWENYVEG 747 (841)
Q Consensus 718 ~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~ 747 (841)
........|.++|+.||.+|+|||+..++.
T Consensus 206 ~~~~~~~~~~~~e~~Ar~~r~GlW~~gd~~ 235 (246)
T 2hqx_A 206 QFQKVITEYLNAQESAKSARLNLWRYGDFR 235 (246)
T ss_dssp ------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhccCcccCCCCC
Confidence 122345679999999999999999876543
No 12
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=99.02 E-value=4.1e-10 Score=100.97 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEeeEcCCC
Q 003181 784 DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSSS 838 (841)
Q Consensus 784 ~~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~~ 838 (841)
+.+|++||++|++||.+..+ ..+.|++|++|+|+|++|+.||||+|+++.+++
T Consensus 4 s~~Le~Lm~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~ 56 (94)
T 3fdr_A 4 SLQLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTLENG 56 (94)
T ss_dssp -CHHHHHHHHHHHHHTTCCC--CCCCCCTTCEEEEEETTTTEEEEEEEEEECTTS
T ss_pred HHHHHHHHHHHHHHHhcCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEEECCCC
Confidence 46899999999999987543 347899999999999999999999999997653
No 13
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.1e-09 Score=94.56 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=38.1
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEeeEcCCCCC
Q 003181 790 VQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSSSLL 840 (841)
Q Consensus 790 L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~~~~ 840 (841)
|++.|..|+.++.+. +..+|+|++|+|+|++||+||||+|+++..+..+
T Consensus 4 L~e~M~~~~~~s~~~--~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~v 52 (85)
T 2eqk_A 4 GSSGMIAAYENSKWE--PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLV 52 (85)
T ss_dssp CCCCHHHHHHHSCCC--CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEE
T ss_pred HHHHHHHHhccCCCc--ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeE
Confidence 344455555544333 5789999999999999999999999999987654
No 14
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=98.80 E-value=3.8e-09 Score=97.43 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 785 QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 785 ~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
.+|++||++|++|+....+ ..+.|++|++|+|+|++|++||||+|+++.++
T Consensus 10 ~~l~~L~~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~ 60 (110)
T 2diq_A 10 LQLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTLEN 60 (110)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CCCCCCTTCEEEECCTTTCSCEEEEECCCCSS
T ss_pred HHHHHHHHHHHHHHccCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEEECCC
Confidence 6899999999999986532 34789999999999999999999999999764
No 15
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=98.63 E-value=3e-08 Score=82.37 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=28.5
Q ss_pred CCCCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 807 AFNPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 807 ~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
.+.|++||+|+|+||+|++||||+|+++.++
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~ 36 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEE 36 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEETT
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcCC
Confidence 4789999999999999999999999999863
No 16
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=98.53 E-value=5.7e-08 Score=77.85 Aligned_cols=28 Identities=36% Similarity=0.355 Sum_probs=24.4
Q ss_pred CCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 810 PKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 810 pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
.++|++|+|+||+|++||||+|+++..+
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~ 29 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSS 29 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--C
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCC
Confidence 4799999999999999999999999754
No 17
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=98.50 E-value=8.7e-08 Score=82.47 Aligned_cols=30 Identities=33% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
..+++|++|+|+||+||.||||+|+++..+
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~ 45 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHSS 45 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECTT
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeCC
Confidence 569999999999999999999999999754
No 18
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=98.44 E-value=1.7e-07 Score=76.55 Aligned_cols=28 Identities=21% Similarity=0.044 Sum_probs=26.2
Q ss_pred CCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 809 NPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
.+++|++|+|+||+|+.||||+|+++..
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcC
Confidence 5789999999999999999999999975
No 19
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=98.44 E-value=1.6e-07 Score=81.02 Aligned_cols=30 Identities=30% Similarity=0.252 Sum_probs=28.0
Q ss_pred CCCCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 807 AFNPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 807 ~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
.+.|++|++|+|+|++|++||||+|+++..
T Consensus 7 ~~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~ 36 (78)
T 2d9t_A 7 GKVWKPGDECFALYWEDNKFYRAEVEALHS 36 (78)
T ss_dssp CCCCCTTCEEEEECTTTCCEEEEEEEEECS
T ss_pred ccCCCcCCEEEEEECCCCCEEEEEEEEEeC
Confidence 378999999999999999999999999975
No 20
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=98.43 E-value=1.5e-07 Score=82.93 Aligned_cols=29 Identities=21% Similarity=0.013 Sum_probs=27.3
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
..|++|++|+|+||+||.||||+|+++..
T Consensus 9 ~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~ 37 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCIYPATIASIDF 37 (88)
T ss_dssp CCCCSSCEEEEECTTTCCEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEecC
Confidence 57999999999999999999999999976
No 21
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=3.4e-06 Score=71.75 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=28.0
Q ss_pred CCCCCCCCeEEEEECCCCcEeeEEEeeEcCCC
Q 003181 807 AFNPKKGEIVLAQFSADNSWNRAMDNCLLSSS 838 (841)
Q Consensus 807 ~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~~ 838 (841)
.+.+++||.|+|+|| ||.||||+|+++.+++
T Consensus 7 ~~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~~ 37 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DCRYYPAKIEAINKEG 37 (74)
T ss_dssp CCCCCTTCEEEEECS-SSSEEEEEEEEESTTS
T ss_pred CCCCCCCCEEEEECC-CCCEEEEEEEEECCCC
Confidence 467999999999999 9999999999998743
No 22
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=97.92 E-value=7.8e-06 Score=84.73 Aligned_cols=118 Identities=16% Similarity=0.206 Sum_probs=85.4
Q ss_pred ccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCCcce
Q 003181 562 RSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCS 641 (841)
Q Consensus 562 ~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~k~~~l~~~Ve~V~dGdtl~v~ip~~~~~ 641 (841)
+..|||+.|.. +.. +....+.|+|| ||.+ .++.. ..++|+.. | +.+|. +.
T Consensus 79 d~~WyRa~V~~----------~~~-~~~~~V~~vDy--Gn~~----~v~~~-~l~~l~~~---------f-~~lP~--qA 128 (226)
T 4b9x_A 79 DGNWYRALVKE----------ILP-SGNVKVHFVDY--GNVE----EVTTD-QLQAILPQ---------F-LLLPF--QG 128 (226)
T ss_dssp TTEEEEEEEEE----------ECS-SSEEEEECTTT--CCEE----EEEGG-GEECCCGG---------G-SSSCB--CC
T ss_pred CCeEEEEEEEE----------ECC-CCeEEEEEEec--CCEE----EEEHH-HhccChHH---------H-ccccc--ce
Confidence 35699987752 111 12234679999 7876 56554 55555431 1 12566 45
Q ss_pred EEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC----CcchhHHHHHcCCeecc
Q 003181 642 IAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES----RTNVAVILLEAGLAKLQ 712 (841)
Q Consensus 642 i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~----~~~i~~~Ll~~GlA~v~ 712 (841)
++|+|+||.++ +..|..+|..++++++.++.+.+.|.+.+. +.+.+.|+.. +.+|+..|+++|||...
T Consensus 129 ~~c~L~~v~p~--~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~-~~~~V~L~d~~~~~~~~I~~~Lv~~gla~~~ 200 (226)
T 4b9x_A 129 MQCWLVDIQPP--NKHWTKEATARFQACVVGLKLQARVVEITA-NGVGVELTDLSTPYPKIISDVLIREQLVLRC 200 (226)
T ss_dssp EEEEESSEECS--SSSCCHHHHHHHHHHHTTCCEEEEEEEECS-SCEEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred EEEEEecEECC--CCCCCHHHHHHHHHHHCCCeEEEEEEEEeC-CeEEEEEEECCCCCCccHHHHHHHCCCcccc
Confidence 89999999965 467999999999999999999999988864 3467788864 35799999999999753
No 23
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=97.86 E-value=1.1e-05 Score=82.19 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCCcceE
Q 003181 563 SNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSI 642 (841)
Q Consensus 563 s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~k~~~l~~~Ve~V~dGdtl~v~ip~~~~~i 642 (841)
..|||+.+.. +.. .....+.|+|| ||.+ .++.. ..++|+.. | ..+|. +.+
T Consensus 80 ~~wyRa~V~~----------~~~-~~~~~V~~vDy--G~~~----~v~~~-~l~~l~~~---------f-~~lP~--qA~ 129 (201)
T 4b9w_A 80 GNWYRALVKE----------ILP-SGNVKVHFVDY--GNVE----EVTTD-QLQAILPQ---------F-LLLPF--QGM 129 (201)
T ss_dssp TEEEEEEEEE----------ECT-TSCEEEEETTT--CCEE----EECGG-GEEECCGG---------G-GSSCB--CCE
T ss_pred CeEEEEEEEE----------ECC-CCeEEEEEEcc--CCEE----EEEHH-HhccChHh---------H-cccch--hhE
Confidence 5699887752 111 12234679999 7876 55544 44554431 1 12566 458
Q ss_pred EEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC----CcchhHHHHHcCCee
Q 003181 643 AFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES----RTNVAVILLEAGLAK 710 (841)
Q Consensus 643 ~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~----~~~i~~~Ll~~GlA~ 710 (841)
+|+|+||.++ +..|..+|..++++++.++.+.+.|.+.+. +.+.+.|+.. +.+|+..|+++|||.
T Consensus 130 ~c~L~~v~p~--~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~-~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~ 198 (201)
T 4b9w_A 130 QCWLVDIQPP--NKHWTKEATARFQACVVGLKLQARVVEITA-NGVGVELTDLSTPYPKIISDVLIREQLVL 198 (201)
T ss_dssp EEEESSEECS--SSSCCHHHHHHHHHHHTTCCEEEEEEEEET-TEEEEEEEECSSSSCEEHHHHHHHTTSSE
T ss_pred EEEEcCEEcC--CCCCCHHHHHHHHHHHCCCEEEEEEEEEeC-CEEEEEEEECCCCCccchHHHHHHCcCee
Confidence 9999999965 467999999999999999999999988754 3466778763 357999999999995
No 24
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=96.98 E-value=3.2e-06 Score=72.78 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=26.8
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcCCC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLSSS 838 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~~ 838 (841)
..+++||.|+|+|| |+.||||+|+++.+++
T Consensus 5 ~~~kvGd~clAkws-Dg~wY~A~I~~v~~~~ 34 (81)
T 2ldm_A 5 SEFQINEQVLASWS-DSRFYPAKVTAVNKDG 34 (81)
Confidence 46889999999999 9999999999997643
No 25
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=96.78 E-value=0.0012 Score=65.17 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=75.4
Q ss_pred ccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCCcce
Q 003181 562 RSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCS 641 (841)
Q Consensus 562 ~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~k~~~l~~~Ve~V~dGdtl~v~ip~~~~~ 641 (841)
+..|||+.+.. +... ....+.|+|| ||.+. +. +.++|+.. | ..+|. ..
T Consensus 61 d~~wyRa~I~~----------~~~~-~~~~V~fvDy--Gn~~~----v~---~lr~l~~~---------f-~~lP~--qA 108 (169)
T 3ntk_A 61 DEVFYRAQIRK----------VLDD-GKCEVHFIDF--GNNAV----TQ---QFRQLPEE---------L-AKPAR--YS 108 (169)
T ss_dssp TTEEEEEEEEE----------ECST-TCEEEEETTT--TEEEE----ES---CEECCCHH---------H-HSSCC--SS
T ss_pred CCcEEEEEEEE----------ECCC-CEEEEEEEec--CCeEE----hh---hhhccCHH---------H-hhCCc--ee
Confidence 35699877762 1111 2234679999 78773 22 44455432 1 12577 44
Q ss_pred EEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeCCcchhHHH
Q 003181 642 IAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVIL 703 (841)
Q Consensus 642 i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~~~~i~~~L 703 (841)
++|+|+||++|.. ..+|..++++++.++.+.+.|......+...+.|+.++.+||+.|
T Consensus 109 ~~c~L~~v~~~~~----~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~~V~L~~~~~~in~~L 166 (169)
T 3ntk_A 109 RHCELDASTISKC----DAALLQSFIDTRFSETFQVEILATKGTGTHVVRLFYQSKNISEKL 166 (169)
T ss_dssp EEEEECGGGSCHH----HHHHHHHHHHTTTTSEEEEEEEEECTTSCEEEEEEETTEEHHHHC
T ss_pred EEEEECCcCCCCC----hHHHHHHHHHHhCCCeEEEEEEEecCCCCEEEEEEECCCCHHHHh
Confidence 8899999997742 889999999999999999999886433445599999999999876
No 26
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=95.77 E-value=0.009 Score=51.65 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=27.1
Q ss_pred CCCCCCCCeEEEEECCCCcEeeEEEeeEcCCC
Q 003181 807 AFNPKKGEIVLAQFSADNSWNRAMDNCLLSSS 838 (841)
Q Consensus 807 ~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~~ 838 (841)
+...++|+.|.|++ .|+.||-|+|+++.+++
T Consensus 19 ~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~~ 49 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDCRFYPAKVTAVNKDG 49 (85)
T ss_dssp --CCCTTCEEEEEC-TTSCEEEEEEEEECTTS
T ss_pred CcccccCCEEEEEe-CCCCEeeEEEEEECCCC
Confidence 45688999999999 79999999999999875
No 27
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=95.59 E-value=0.013 Score=48.60 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=27.1
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcCCC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLSSS 838 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~~ 838 (841)
...++||.|.|++ .|+.||-|+|+++.+++
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~~~~ 34 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVNKDG 34 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEECTTS
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEECCCC
Confidence 3578999999999 79999999999999875
No 28
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=86.61 E-value=0.93 Score=37.13 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=26.1
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
...++|+-|+|.++ |+.+|=|+|++|..+
T Consensus 12 ~~f~vGddVLA~wt-DGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 12 CKFEEGQDVLARWS-DGLFYLGTIKKINIL 40 (66)
T ss_dssp CCSCTTCEEEEECT-TSCEEEEEEEEEETT
T ss_pred ccccCCCEEEEEEc-cCcEEEeEEEEEccC
Confidence 46889999999996 999999999999864
No 29
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=86.59 E-value=0.89 Score=36.94 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=26.9
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
....+||.|.|+.+.|+.+|-|+|+++...
T Consensus 8 ~~~~vgd~VmaRW~Gd~~yYparI~Si~s~ 37 (66)
T 2l8d_A 8 RKYADGEVVMGRWPGSVLYYEVQVTSYDDA 37 (66)
T ss_dssp SSSCSSCEEEEECTTSSCEEEEEEEEEETT
T ss_pred eEeecCCEEEEEcCCCccceEEEEEEeccC
Confidence 457799999999999999999999999844
No 30
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=82.87 E-value=1.7 Score=40.59 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=45.7
Q ss_pred cccEEEEEEEEEeeCCeEEEEecCchhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCC----cEeeEEEeeEc
Q 003181 760 QKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN----SWNRAMDNCLL 835 (841)
Q Consensus 760 ~g~~~~v~Vs~V~s~~~f~iQ~~~~~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~----~WYRAkV~~v~ 835 (841)
.|..++++|..| ..+.+.|.+.+.-+.+ -.-.|++... .++......+..||-|-+....++ .||+|+|+++.
T Consensus 14 ~G~~y~a~V~~v-~~d~~~V~f~n~w~~~-~~vp~~~vRl-pP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 14 NGAFYKGFVKDV-HEDSVTIFFENNWQSE-RQIPFGDVRL-PPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp TSCEEEEEEEEE-CSSEEEEEETTCTTCC-EEEEGGGEEC-CCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CCCEEEEEEEEE-eCCcEEEEEccccCcc-eEechhhEEc-CCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 488999999998 4777999997642210 0000111111 111122356889999999765556 79999999998
Q ss_pred CC
Q 003181 836 SS 837 (841)
Q Consensus 836 ~~ 837 (841)
++
T Consensus 91 g~ 92 (128)
T 3h8z_A 91 GD 92 (128)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 31
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=81.51 E-value=2.7 Score=34.23 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=27.0
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
....+||.|.|+...|+.+|-|+|+++...
T Consensus 11 ~~f~vgd~VmaRW~Gd~~yYparItSits~ 40 (68)
T 2dig_A 11 RKFADGEVVRGRWPGSSLYYEVEILSHDST 40 (68)
T ss_dssp CSSCSSCEEEEECTTTCCEEEEEEEEEETT
T ss_pred eEeecCCEEEEEccCCccceEEEEEEeccC
Confidence 457799999999999999999999999743
No 32
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=73.41 E-value=2.3 Score=35.99 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=23.4
Q ss_pred CCCCCCeEEEEEC--CCCcEeeEEEeeEcC
Q 003181 809 NPKKGEIVLAQFS--ADNSWNRAMDNCLLS 836 (841)
Q Consensus 809 ~pk~G~~c~A~fs--~D~~WYRAkV~~v~~ 836 (841)
.+.+|+.|.++.. .++.||.|+|+++..
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~ 34 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEI 34 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEc
Confidence 5789999999987 236999999999863
No 33
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=68.52 E-value=4.9 Score=35.92 Aligned_cols=26 Identities=19% Similarity=-0.027 Sum_probs=22.6
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEc
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLL 835 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~ 835 (841)
..+.+|+.|.+.. ++.||.|+|+++.
T Consensus 21 ~~f~vGekVl~~~--~~~~YeAkIl~v~ 46 (102)
T 2f5k_A 21 PKFQEGERVLCFH--GPLLYEAKCVKVA 46 (102)
T ss_dssp CSCCTTCEEEEES--SSSEEEEEEEEEE
T ss_pred cccCCCCEEEEEE--CCEEEEEEEEEEE
Confidence 4577999999975 7999999999986
No 34
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.03 E-value=6.7 Score=32.01 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=25.3
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
..+..|+-|+|+.| |+.+|-+.|.+|..
T Consensus 8 ~~f~eGqdVLarWs-DGlfYlGtV~kV~~ 35 (68)
T 2e5p_A 8 PRLWEGQDVLARWT-DGLLYLGTIKKVDS 35 (68)
T ss_dssp CCCCTTCEEEEECT-TSSEEEEEEEEEET
T ss_pred cccccCCEEEEEec-CCcEEEeEEEEEec
Confidence 45789999999998 99999999999975
No 35
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=65.70 E-value=6.2 Score=34.61 Aligned_cols=27 Identities=7% Similarity=-0.279 Sum_probs=23.2
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
..+.+|+.|.++. |+.||.|+|+++..
T Consensus 22 ~~~~vG~kv~v~~--~~~~y~AkIl~ir~ 48 (92)
T 2ro0_A 22 DDIIIKCQCWVQK--NDEERLAEILSINT 48 (92)
T ss_dssp TSCCTTCEEEEEE--TTEEEEEEEEEEEC
T ss_pred ccccCCCEEEEEE--CCEEEEEEEEEEEE
Confidence 4578999999985 89999999999874
No 36
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.50 E-value=3.9 Score=35.53 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=25.1
Q ss_pred CCCCCCCeEEEEEC---CCCcEeeEEEeeEcC
Q 003181 808 FNPKKGEIVLAQFS---ADNSWNRAMDNCLLS 836 (841)
Q Consensus 808 ~~pk~G~~c~A~fs---~D~~WYRAkV~~v~~ 836 (841)
..+.+|+.|.+... .++.||.|+|+++..
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~ 39 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKD 39 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECC
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEE
Confidence 45789999999984 589999999999874
No 37
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.50 E-value=9.7 Score=30.64 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=26.9
Q ss_pred CCCCCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 806 GAFNPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 806 ~~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
+...++.|+-|+|+.| |+.+|=+.|.+|...
T Consensus 4 g~~~f~eGqdVLarWs-DGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 4 GSSGLTEGQYVLCRWT-DGLYYLGKIKRVSSS 34 (63)
T ss_dssp SCCCCCTTCEEEEECT-TSCEEEEEECCCCST
T ss_pred CccceecCCEEEEEec-CCCEEEEEEEEEecC
Confidence 3467889999999998 999999999999743
No 38
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=58.19 E-value=14 Score=29.37 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=25.0
Q ss_pred CCCCCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 809 NPKKGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
..+.|+=|+|+.| |+.+|=+.|++|...
T Consensus 3 ~f~~GedVLarws-DG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 3 RLWEGQDVLARWT-DGLLYLGTIKKVDSA 30 (58)
T ss_dssp SCCTTCEEEEECT-TSCEEEEEEEEEETT
T ss_pred ccccCCEEEEEec-CCCEEeEEEEEEecC
Confidence 4678999999998 899999999998765
No 39
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=58.15 E-value=6.8 Score=34.49 Aligned_cols=26 Identities=8% Similarity=-0.232 Sum_probs=22.6
Q ss_pred CCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 809 NPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
.+.+|+.|.++- |+.||.|+|+++..
T Consensus 25 ~~~vG~kv~v~~--~~~~yeAeIl~ir~ 50 (94)
T 2rnz_A 25 DIIIKCQCWVQK--NDEERLAEILSINT 50 (94)
T ss_dssp GCCTTEEEEEEC--SSCEEEEEEEEEEC
T ss_pred cccCCCEEEEEE--CCEEEEEEEEEEEE
Confidence 467999999984 89999999999874
No 40
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=51.67 E-value=16 Score=32.56 Aligned_cols=29 Identities=21% Similarity=0.031 Sum_probs=23.2
Q ss_pred CCCCCCCeEEEEECC---CCcEeeEEEeeEcC
Q 003181 808 FNPKKGEIVLAQFSA---DNSWNRAMDNCLLS 836 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~---D~~WYRAkV~~v~~ 836 (841)
..+.+|+.|++.+.+ ...||.|+|+++..
T Consensus 18 ~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~ 49 (101)
T 3m9q_A 18 PLFHKGEIVLCYEPDKSKARVLYTSKVLNVFE 49 (101)
T ss_dssp CCCCTTCEEEEECCCTTSCCCEEEEEEEEEEE
T ss_pred CcccCCCEEEEEecCCCCCCcceEeEEEEEEe
Confidence 567899999996632 48899999999864
No 41
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=46.68 E-value=21 Score=32.26 Aligned_cols=28 Identities=25% Similarity=0.139 Sum_probs=22.9
Q ss_pred CCCCCCCeEEEEECCC----CcEeeEEEeeEcC
Q 003181 808 FNPKKGEIVLAQFSAD----NSWNRAMDNCLLS 836 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D----~~WYRAkV~~v~~ 836 (841)
..+.+|+.|++.+ .| ..||-|+|+++..
T Consensus 18 ~~F~~GEkVLc~h-gd~~k~~~lYeAKIl~v~~ 49 (110)
T 3m9p_A 18 FKFHSGEKVLCFE-PDPTKARVLYDAKIVDVIV 49 (110)
T ss_dssp CCSCTTCEEEEEC-SCTTSCCCEEEEEEEEEEE
T ss_pred CcccCCCEEEEEc-CCCCCCCCceeeEEEEEEe
Confidence 5578999999864 45 6999999999863
No 42
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=41.97 E-value=20 Score=35.28 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=44.7
Q ss_pred ccEEEEEEEEEee-CCeEEEEecCchhHHHHHHHHHHhhcc---C--CCC----C---CCCCCCCCCeEEEEECCCCcEe
Q 003181 761 KEVLKVVVTEILG-GGKFYVQQVGDQKVASVQQQLASLNLQ---E--APV----I---GAFNPKKGEIVLAQFSADNSWN 827 (841)
Q Consensus 761 g~~~~v~Vs~V~s-~~~f~iQ~~~~~~L~~L~~~l~~~~~~---~--~~~----~---~~~~pk~G~~c~A~fs~D~~WY 827 (841)
++.+-+.|+.+.. .++|-|+..+... . ..|..+ . .|. + ......+|+.|+|.|-+--++|
T Consensus 62 ~~WILa~Vv~~~~~~~rYeV~D~d~eg-----~--~~~~~s~~~IIPLP~~~a~p~t~~~~~f~~G~~VLAlYP~TT~FY 134 (180)
T 3mea_A 62 EQWILAEVVSYSHATNKYEVDDIDEEG-----K--ERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFY 134 (180)
T ss_dssp EEEEEEEEEEEETTTTEEEEEECCTTC-----C--EEEEEEGGGEEECCSBBCCTTTCGGGSCCTTCEEEEECTTSSEEE
T ss_pred ccEEEEEEEEEcCCCCEEEEecCCCCC-----c--eeEEeCHHHEEECCCcCCCcccCccccCCCCCEEEEeCCCCceee
Confidence 4567788887764 5688899887420 0 112221 0 111 0 1134789999999999999999
Q ss_pred eEEEeeEc
Q 003181 828 RAMDNCLL 835 (841)
Q Consensus 828 RAkV~~v~ 835 (841)
||.|.+..
T Consensus 135 ~A~V~~~p 142 (180)
T 3mea_A 135 RALIHAPP 142 (180)
T ss_dssp EEEEEECC
T ss_pred EEEEecCC
Confidence 99999764
No 43
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=39.58 E-value=42 Score=27.61 Aligned_cols=32 Identities=16% Similarity=-0.008 Sum_probs=26.6
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcCCCCC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLSSSLL 840 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~~~~~ 840 (841)
.....|+=|+|+.+ ||.+|=+.|+.....++|
T Consensus 14 ~~~~~geDVL~rw~-DG~fYLGtIVd~~~~~Cl 45 (69)
T 2xk0_A 14 VTYALQEDVFIKCN-DGRFYLGTIIDQTSDQYL 45 (69)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEECSSCEE
T ss_pred cccccCCeEEEEec-CCCEEEEEEEecCCceEE
Confidence 55778999999987 899999999887666553
No 44
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=38.52 E-value=27 Score=30.52 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=20.3
Q ss_pred CCCeEEEEECCCCcEeeEEEeeEcCC
Q 003181 812 KGEIVLAQFSADNSWNRAMDNCLLSS 837 (841)
Q Consensus 812 ~G~~c~A~fs~D~~WYRAkV~~v~~~ 837 (841)
.|+.|.++-+ |+.||+|+|+++...
T Consensus 17 ~~e~vlc~~~-dg~~yeAeIl~ir~~ 41 (92)
T 2bud_A 17 PDKIYFIRRE-DGTVHRGQVLQSRTT 41 (92)
T ss_dssp TTSCEEEECT-TSCEEEEEEEEEECT
T ss_pred CCCEEEEEeC-CCCEEEEEEEEEeec
Confidence 4778888764 899999999998743
No 45
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=39.49 E-value=9 Score=33.05 Aligned_cols=27 Identities=19% Similarity=-0.165 Sum_probs=22.5
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
..+.+|+.|.+.. ++.||.|+|+++..
T Consensus 11 ~~~~~Gekv~~~~--~~~~y~AkIl~i~~ 37 (85)
T 2lrq_A 11 TLFVDGERVLCFH--GPLIYEAKVLKTKP 37 (85)
Confidence 3567899999987 56899999999863
No 46
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=32.16 E-value=52 Score=25.26 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=28.3
Q ss_pred ccceeEEEEEEE-eCcEEEEEeCCCCCCCccceEEEEeecccC
Q 003181 377 DQNFTGKVVEVV-SGDCIIVADDSIPYGNALAERRVNLSSIRC 418 (841)
Q Consensus 377 ~~~~~~~V~~V~-sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~ 418 (841)
++.++|+|.+|. +++++.|...+ +|+ ...|.+++||.
T Consensus 16 g~wYrA~I~~i~~~~~~~~V~fvD--YGn---~e~v~~~~lrp 53 (54)
T 3s6w_A 16 NKFYRAEVEALHSSGMTAVVKFID--YGN---YEEVLLSNIKP 53 (54)
T ss_dssp TEEEEEEEEEC--CCSEEEEEETT--TCC---EEEEEGGGEEC
T ss_pred CCEEEEEEEEEeCCCCEEEEEEEc--cCC---eEEEeHHHEEE
Confidence 368999999998 47888888854 354 67899999874
No 47
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=30.07 E-value=73 Score=24.96 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=30.7
Q ss_pred ccceeEEEEEEEe-CcEEEEEeCCCCCCCccceEEEEeecccCC
Q 003181 377 DQNFTGKVVEVVS-GDCIIVADDSIPYGNALAERRVNLSSIRCP 419 (841)
Q Consensus 377 ~~~~~~~V~~V~s-gd~i~v~~~~~~~~~~~~e~~v~Lssi~~p 419 (841)
++.++|+|.+|.. ++++.|...+ +|+ ...|.+++||..
T Consensus 18 g~wYrA~I~~i~~~~~~~~V~f~D--YGn---~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 18 GCIYPATIASIDFKRETCVVVYTG--YGN---REEQNLSDLLSP 56 (59)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETT--TTE---EEEEEGGGCBCT
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEc--CCC---EEEEcHHHeeCC
Confidence 4689999999986 6889999854 454 678999999975
No 48
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=25.76 E-value=45 Score=27.97 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=24.5
Q ss_pred CCCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181 808 FNPKKGEIVLAQFSADNSWNRAMDNCLLS 836 (841)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~v~~ 836 (841)
.....|+=|+|+.+ ||.+|=+.|++|..
T Consensus 25 ~~f~eGeDVLarws-DGlfYLGTI~kV~~ 52 (79)
T 2m0o_A 25 PRLWEGQDVLARWT-DGLLYLGTIKKVDS 52 (79)
T ss_dssp CCCCTTCEEEBCCT-TSCCCEEEEEEEET
T ss_pred ceeccCCEEEEEec-CCCEEeEEEEEecc
Confidence 34668999999997 99999999998874
No 49
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=24.83 E-value=1.1e+02 Score=26.33 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=30.8
Q ss_pred ccceeEEEEEEEe-CcEEEEEeCCCCCCCccceEEEEeecccCC
Q 003181 377 DQNFTGKVVEVVS-GDCIIVADDSIPYGNALAERRVNLSSIRCP 419 (841)
Q Consensus 377 ~~~~~~~V~~V~s-gd~i~v~~~~~~~~~~~~e~~v~Lssi~~p 419 (841)
+..|+|+|.+|.. ++++.|...+ +|+ ...|.|++|+.+
T Consensus 25 g~wYrA~I~~i~~~~~~~~V~fiD--YGN---~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 25 GCIYPATIASIDFKRETCVVVYTG--YGN---REEQNLSDLLSP 63 (88)
T ss_dssp CCEEEEEEEEEETTTTEEEEEETT--TCC---EEEEEGGGCBCC
T ss_pred CCEEEEEEEEecCCCCEEEEEEec--CCC---EEEEcHHHcccC
Confidence 4689999999986 5888999854 454 678999999975
No 50
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=24.51 E-value=94 Score=28.37 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=30.9
Q ss_pred HHhhhhcCCCcceee--EEEec-CCCEEEEEEcCCceEEEEEEe
Q 003181 177 MALLDANKGRPMQGI--VEQAR-DGSTLRVYLLPEFQFVQVFVA 217 (841)
Q Consensus 177 ~~~l~~~~~~~~~~~--Ve~V~-dG~t~~v~~~~~~~~~~v~l~ 217 (841)
-++|..+.|+++.-+ |+++. +|+++.+.- .++..++|.|.
T Consensus 14 ~s~L~~fvgk~VrivGkV~~~~~~g~~~~l~s-~Dg~~Vtv~l~ 56 (121)
T 3kdf_A 14 AGMLAQFIDKPVCFVGRLEKIHPTGKMFILSD-GEGKNGTIELM 56 (121)
T ss_dssp GGGGGGGTTCEEEEEEEEEEECTTSSEEEEEC-TTSCEEEEECS
T ss_pred HHHHHhhCCCeEEEEEEEEEEcCCCCEEEEEe-CCCCEEEEEeC
Confidence 356777888887655 88987 799999984 46678888884
No 51
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=23.38 E-value=72 Score=32.45 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=44.8
Q ss_pred CcccEEEEEEEEEee---------CC-eEEEEecCchhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEEC-----CC
Q 003181 759 KQKEVLKVVVTEILG---------GG-KFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFS-----AD 823 (841)
Q Consensus 759 ~~g~~~~v~Vs~V~s---------~~-~f~iQ~~~~~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs-----~D 823 (841)
..|..|++.|..|.. .+ .+++++.+-++-...........-.......-...++|+.|.+-|. ++
T Consensus 15 ~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irprar~~~~~~~l~~g~~vm~nyn~~~~~~~ 94 (226)
T 3ask_A 15 NMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQDLEVGQVVMLNYNPDNPKER 94 (226)
T ss_dssp TTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECCCCBCCGGGCCTTCEEEEEECTTSTTSC
T ss_pred CCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccccccCCccccccCcEEEEecccCCcccc
Confidence 347788888888864 23 4556665421111000011111111111111135789999999992 48
Q ss_pred CcEeeEEEeeEcCC
Q 003181 824 NSWNRAMDNCLLSS 837 (841)
Q Consensus 824 ~~WYRAkV~~v~~~ 837 (841)
|.||=|.|+++...
T Consensus 95 G~~y~~~I~~~~~~ 108 (226)
T 3ask_A 95 GFWYDAEISRKRET 108 (226)
T ss_dssp CEEEEEEEEEEEEC
T ss_pred Cceeehhhhhhhhc
Confidence 99999999998754
No 52
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=22.87 E-value=96 Score=25.88 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=29.8
Q ss_pred ccceeEEEEEEE-eCcEEEEEeCCCCCCCccceEEEEeecccC
Q 003181 377 DQNFTGKVVEVV-SGDCIIVADDSIPYGNALAERRVNLSSIRC 418 (841)
Q Consensus 377 ~~~~~~~V~~V~-sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~ 418 (841)
+..|+|+|.+|. +++++.|...+ +|+ ...|.+++||.
T Consensus 32 g~wYRA~I~~i~~~~~~~~V~fvD--YGN---~e~V~~~~Lr~ 69 (77)
T 3pnw_C 32 NKFYRAEVEALHSSGMTAVVKFID--YGN---YEEVLLSNIKP 69 (77)
T ss_dssp TEEEEEEEEEECTTSSEEEEEETT--TCC---EEEEEGGGEEC
T ss_pred CCEEEEEEEEEeCCCCEEEEEEEc--CCC---eEEEeHHHeEE
Confidence 468999999998 46788888854 354 77899999986
Done!