Query 003183
Match_columns 841
No_of_seqs 487 out of 2772
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 18:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 5.8E-43 1.3E-47 414.9 49.2 702 2-785 672-1403(1463)
2 KOG1892 Actin filament-binding 100.0 4.6E-31 9.9E-36 296.6 23.4 307 434-810 544-865 (1629)
3 PF01843 DIL: DIL domain; Int 100.0 9.4E-30 2E-34 232.4 6.4 105 661-768 1-105 (105)
4 KOG0160 Myosin class V heavy c 99.9 1.5E-24 3.3E-29 253.3 28.3 147 1-150 608-758 (862)
5 KOG0161 Myosin class II heavy 99.9 4.9E-18 1.1E-22 213.3 47.7 338 2-371 704-1081(1930)
6 PTZ00014 myosin-A; Provisional 99.7 1.5E-16 3.2E-21 191.0 12.4 103 1-103 704-818 (821)
7 KOG0164 Myosin class I heavy c 99.6 1.7E-15 3.8E-20 168.8 16.0 120 2-131 626-755 (1001)
8 KOG0163 Myosin class VI heavy 99.5 1.7E-10 3.7E-15 129.7 34.6 122 2-132 707-835 (1259)
9 KOG0162 Myosin class I heavy c 99.1 1.1E-10 2.4E-15 131.0 9.6 90 2-91 626-725 (1106)
10 KOG0161 Myosin class II heavy 99.0 1.2E-06 2.5E-11 112.4 35.8 52 76-127 764-816 (1930)
11 cd01384 MYSc_type_XI Myosin mo 98.8 4E-09 8.6E-14 125.6 5.6 60 1-60 608-673 (674)
12 KOG0160 Myosin class V heavy c 98.6 2.9E-07 6.4E-12 109.5 12.6 85 111-198 674-758 (862)
13 KOG0520 Uncharacterized conser 98.4 7.5E-07 1.6E-11 106.1 9.3 127 62-205 810-938 (975)
14 COG5022 Myosin heavy chain [Cy 98.3 0.00048 1E-08 85.2 29.9 89 110-198 745-834 (1463)
15 cd01385 MYSc_type_IX Myosin mo 98.2 1.1E-06 2.5E-11 105.3 5.5 58 1-58 627-689 (692)
16 KOG0520 Uncharacterized conser 98.2 4.3E-06 9.4E-11 99.8 9.0 135 63-197 757-905 (975)
17 KOG1029 Endocytic adaptor prot 97.4 0.029 6.3E-07 65.3 23.4 22 682-703 1009-1030(1118)
18 KOG2128 Ras GTPase-activating 97.3 0.0071 1.5E-07 74.9 17.7 119 87-205 509-646 (1401)
19 KOG0971 Microtubule-associated 97.2 0.67 1.5E-05 55.4 31.8 29 631-659 897-925 (1243)
20 PF09726 Macoilin: Transmembra 97.2 0.18 3.9E-06 60.9 27.7 162 209-381 461-661 (697)
21 PRK11637 AmiB activator; Provi 97.2 0.12 2.6E-06 59.5 25.3 19 249-267 105-123 (428)
22 PF00612 IQ: IQ calmodulin-bin 97.1 0.00058 1.3E-08 42.9 3.4 19 63-81 2-20 (21)
23 PF00612 IQ: IQ calmodulin-bin 97.0 0.001 2.2E-08 41.9 3.6 19 159-177 2-20 (21)
24 KOG0164 Myosin class I heavy c 97.0 0.0077 1.7E-07 69.4 12.9 85 109-203 695-789 (1001)
25 KOG0163 Myosin class VI heavy 96.8 0.97 2.1E-05 53.0 27.9 63 116-186 779-841 (1259)
26 TIGR02169 SMC_prok_A chromosom 96.7 3.6 7.8E-05 53.6 36.7 8 502-509 616-623 (1164)
27 KOG2128 Ras GTPase-activating 96.7 0.034 7.5E-07 69.1 15.9 116 67-182 512-646 (1401)
28 PF09726 Macoilin: Transmembra 96.6 0.59 1.3E-05 56.6 25.8 71 303-373 587-657 (697)
29 PF12718 Tropomyosin_1: Tropom 96.6 0.54 1.2E-05 45.4 20.7 47 213-270 12-58 (143)
30 PRK04863 mukB cell division pr 96.6 4.3 9.3E-05 53.5 35.1 25 209-233 308-332 (1486)
31 KOG0996 Structural maintenance 96.6 3.3 7.1E-05 51.5 40.4 48 716-766 1169-1219(1293)
32 KOG0971 Microtubule-associated 96.6 0.89 1.9E-05 54.4 25.4 21 651-671 889-909 (1243)
33 PRK11637 AmiB activator; Provi 96.5 0.64 1.4E-05 53.5 24.4 26 247-272 96-121 (428)
34 KOG0933 Structural maintenance 96.2 2.7 5.8E-05 51.4 27.2 49 683-735 1058-1106(1174)
35 KOG0995 Centromere-associated 96.1 3.7 7.9E-05 47.4 26.6 60 173-232 264-325 (581)
36 KOG0933 Structural maintenance 96.1 2.6 5.6E-05 51.5 26.3 24 211-234 737-760 (1174)
37 PF07888 CALCOCO1: Calcium bin 96.1 1.2 2.5E-05 51.8 23.0 20 213-232 162-181 (546)
38 smart00015 IQ Short calmodulin 96.0 0.0074 1.6E-07 40.1 3.1 21 61-81 2-22 (26)
39 PF08317 Spc7: Spc7 kinetochor 95.9 1.3 2.8E-05 49.0 22.2 80 294-373 207-290 (325)
40 COG1579 Zn-ribbon protein, pos 95.9 2.7 5.9E-05 43.9 23.9 48 295-342 88-135 (239)
41 COG1579 Zn-ribbon protein, pos 95.9 2.7 5.9E-05 43.8 24.3 6 366-371 178-183 (239)
42 PRK09039 hypothetical protein; 95.9 1.3 2.8E-05 49.3 21.7 29 210-238 48-76 (343)
43 PF07888 CALCOCO1: Calcium bin 95.8 1.9 4.2E-05 50.0 23.4 20 212-231 154-173 (546)
44 KOG0250 DNA repair protein RAD 95.8 7.4 0.00016 48.4 34.3 14 112-125 179-192 (1074)
45 PRK02224 chromosome segregatio 95.8 1 2.2E-05 56.9 23.2 24 28-52 119-142 (880)
46 PF14662 CCDC155: Coiled-coil 95.7 2 4.3E-05 42.9 19.8 68 304-371 68-135 (193)
47 PF04091 Sec15: Exocyst comple 95.7 0.084 1.8E-06 57.9 11.7 134 629-763 175-311 (311)
48 KOG1029 Endocytic adaptor prot 95.6 7 0.00015 46.5 31.2 10 755-764 1053-1062(1118)
49 KOG4643 Uncharacterized coiled 95.6 2.7 5.9E-05 51.2 23.7 22 215-236 408-429 (1195)
50 PTZ00014 myosin-A; Provisional 95.6 0.02 4.4E-07 70.2 6.8 41 111-151 778-818 (821)
51 COG4942 Membrane-bound metallo 95.6 5.3 0.00012 44.9 25.1 30 340-369 219-248 (420)
52 KOG0977 Nuclear envelope prote 95.5 1.3 2.9E-05 51.3 20.5 76 296-371 106-181 (546)
53 KOG1103 Predicted coiled-coil 95.5 2.1 4.7E-05 45.8 20.2 52 322-373 243-294 (561)
54 smart00015 IQ Short calmodulin 95.5 0.016 3.6E-07 38.4 3.1 19 111-129 4-22 (26)
55 PF00261 Tropomyosin: Tropomyo 95.4 4.3 9.3E-05 42.7 24.6 75 297-371 142-216 (237)
56 PRK03918 chromosome segregatio 95.3 2.5 5.4E-05 53.5 24.5 13 41-53 128-140 (880)
57 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.0 3 6.5E-05 39.6 18.1 26 348-373 101-126 (132)
58 PRK09039 hypothetical protein; 94.9 0.69 1.5E-05 51.4 15.7 141 213-364 44-184 (343)
59 PRK03918 chromosome segregatio 94.9 2.9 6.3E-05 52.9 23.2 22 211-232 528-549 (880)
60 KOG0980 Actin-binding protein 94.8 3 6.5E-05 50.2 20.9 23 215-237 358-380 (980)
61 KOG1853 LIS1-interacting prote 94.8 5.7 0.00012 41.0 23.1 36 298-333 93-128 (333)
62 PF12718 Tropomyosin_1: Tropom 94.8 4.1 9E-05 39.3 20.9 20 346-365 116-135 (143)
63 COG3883 Uncharacterized protei 94.8 6.6 0.00014 41.5 22.5 24 247-270 80-103 (265)
64 PHA02562 46 endonuclease subun 94.7 9.3 0.0002 45.6 25.9 75 295-373 298-372 (562)
65 PF08317 Spc7: Spc7 kinetochor 94.7 5.1 0.00011 44.3 21.7 16 352-367 276-291 (325)
66 KOG0995 Centromere-associated 94.6 11 0.00024 43.6 25.2 17 209-225 236-252 (581)
67 KOG0980 Actin-binding protein 94.5 11 0.00024 45.6 24.6 12 721-732 851-862 (980)
68 KOG0976 Rho/Rac1-interacting s 94.5 8.1 0.00017 46.1 22.7 22 297-318 352-373 (1265)
69 KOG4643 Uncharacterized coiled 94.4 4.1 8.8E-05 49.8 20.8 155 210-373 172-336 (1195)
70 KOG0994 Extracellular matrix g 94.2 11 0.00024 46.8 23.8 20 352-371 1724-1743(1758)
71 PF10473 CENP-F_leu_zip: Leuci 94.2 5.4 0.00012 38.2 18.8 27 301-327 78-104 (140)
72 smart00787 Spc7 Spc7 kinetocho 94.2 9.3 0.0002 41.9 21.9 13 361-373 273-285 (312)
73 PF00038 Filament: Intermediat 94.1 11 0.00023 41.3 27.4 27 345-371 262-288 (312)
74 PF15070 GOLGA2L5: Putative go 94.1 17 0.00038 43.6 30.9 78 296-373 153-230 (617)
75 TIGR02169 SMC_prok_A chromosom 94.0 27 0.00059 45.5 49.0 22 24-51 122-145 (1164)
76 COG4372 Uncharacterized protei 94.0 12 0.00025 41.2 23.0 18 354-371 261-278 (499)
77 PF10481 CENP-F_N: Cenp-F N-te 93.9 3.2 6.9E-05 43.4 16.3 67 308-374 65-131 (307)
78 KOG0250 DNA repair protein RAD 93.9 23 0.00051 44.2 36.3 22 350-371 441-462 (1074)
79 TIGR00606 rad50 rad50. This fa 93.8 17 0.00037 48.1 27.4 14 354-367 1030-1043(1311)
80 KOG4229 Myosin VII, myosin IXB 93.7 0.14 3E-06 63.8 7.5 148 3-152 857-1008(1062)
81 TIGR03185 DNA_S_dndD DNA sulfu 93.7 22 0.00048 43.3 27.1 24 346-369 443-466 (650)
82 PF06785 UPF0242: Uncharacteri 93.6 12 0.00027 40.2 22.8 78 296-373 134-222 (401)
83 PF05667 DUF812: Protein of un 93.4 9.1 0.0002 45.7 21.5 27 344-370 453-479 (594)
84 PF13851 GAS: Growth-arrest sp 93.4 11 0.00023 38.7 22.5 75 297-371 94-169 (201)
85 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.4 7.3 0.00016 37.0 17.1 33 330-362 97-129 (132)
86 KOG0976 Rho/Rac1-interacting s 93.3 24 0.00051 42.4 24.6 20 352-371 284-303 (1265)
87 PF04849 HAP1_N: HAP1 N-termin 93.2 6 0.00013 42.7 17.7 9 364-372 295-303 (306)
88 KOG4360 Uncharacterized coiled 93.2 7.7 0.00017 44.1 19.0 77 297-373 227-303 (596)
89 PF00038 Filament: Intermediat 93.1 11 0.00024 41.2 20.8 76 297-372 62-137 (312)
90 PRK02224 chromosome segregatio 93.1 32 0.0007 43.5 41.1 16 61-76 129-144 (880)
91 PF04437 RINT1_TIP1: RINT-1 / 93.1 2.8 6E-05 49.3 16.8 125 630-760 352-491 (494)
92 KOG0999 Microtubule-associated 93.0 17 0.00037 41.7 21.4 21 354-374 196-216 (772)
93 KOG1853 LIS1-interacting prote 92.9 13 0.00028 38.5 21.8 23 350-372 162-184 (333)
94 PRK01156 chromosome segregatio 92.8 20 0.00043 45.6 25.0 29 344-372 415-443 (895)
95 PHA02562 46 endonuclease subun 92.8 26 0.00057 41.7 28.8 17 297-313 307-323 (562)
96 KOG4674 Uncharacterized conser 92.7 14 0.0003 48.8 23.0 75 294-371 1305-1379(1822)
97 PRK04778 septation ring format 92.5 13 0.00029 44.4 21.7 25 296-320 348-372 (569)
98 COG1340 Uncharacterized archae 92.5 18 0.00038 38.9 21.6 22 346-367 229-250 (294)
99 PF05911 DUF869: Plant protein 92.4 17 0.00036 44.6 22.1 60 302-361 105-164 (769)
100 PF14662 CCDC155: Coiled-coil 92.3 13 0.00029 37.2 24.2 34 296-329 102-135 (193)
101 PF05701 WEMBL: Weak chloropla 92.1 31 0.00067 40.8 24.5 12 300-311 341-352 (522)
102 PF05667 DUF812: Protein of un 92.1 21 0.00045 42.8 22.1 29 345-373 447-475 (594)
103 PF08614 ATG16: Autophagy prot 91.9 1.4 3E-05 44.9 10.7 39 335-373 141-179 (194)
104 PF10174 Cast: RIM-binding pro 91.8 22 0.00047 43.8 22.2 27 245-271 334-360 (775)
105 PF15066 CAGE1: Cancer-associa 91.7 28 0.0006 39.4 23.2 21 212-232 335-355 (527)
106 PF15070 GOLGA2L5: Putative go 91.6 21 0.00046 42.9 21.5 10 798-807 594-603 (617)
107 smart00787 Spc7 Spc7 kinetocho 91.5 25 0.00054 38.6 21.4 15 352-366 271-285 (312)
108 PF12128 DUF3584: Protein of u 91.4 59 0.0013 42.7 42.1 27 758-785 1054-1081(1201)
109 PRK10884 SH3 domain-containing 91.4 2.7 6E-05 43.1 12.1 76 295-373 92-167 (206)
110 PF04156 IncA: IncA protein; 91.3 7.7 0.00017 39.2 15.5 12 352-363 172-183 (191)
111 TIGR01843 type_I_hlyD type I s 91.3 31 0.00067 39.2 23.6 29 301-329 201-229 (423)
112 KOG2991 Splicing regulator [RN 91.2 21 0.00045 37.1 23.6 53 321-373 254-306 (330)
113 KOG0977 Nuclear envelope prote 91.1 37 0.0008 39.8 30.5 73 301-373 294-370 (546)
114 PF07111 HCR: Alpha helical co 91.1 33 0.00072 40.9 21.7 44 297-340 163-206 (739)
115 PRK04778 septation ring format 91.1 41 0.00089 40.3 24.3 61 251-318 279-339 (569)
116 KOG1003 Actin filament-coating 90.8 19 0.00042 36.1 22.0 73 295-367 108-187 (205)
117 KOG0612 Rho-associated, coiled 90.8 37 0.00081 43.0 22.5 20 214-233 507-526 (1317)
118 PF04111 APG6: Autophagy prote 90.6 4.3 9.4E-05 44.6 13.6 26 348-373 109-134 (314)
119 PF15397 DUF4618: Domain of un 90.2 28 0.0006 36.9 25.6 30 346-375 194-223 (258)
120 PRK04863 mukB cell division pr 90.1 80 0.0017 42.1 37.8 22 211-232 317-338 (1486)
121 COG4026 Uncharacterized protei 90.1 2.9 6.2E-05 42.3 10.4 29 298-326 144-172 (290)
122 PRK01156 chromosome segregatio 89.9 51 0.0011 41.9 24.5 21 636-656 732-752 (895)
123 KOG0982 Centrosomal protein Nu 89.9 34 0.00074 38.3 19.2 24 244-267 247-270 (502)
124 KOG0612 Rho-associated, coiled 89.7 69 0.0015 40.7 23.8 22 350-371 672-693 (1317)
125 PF09730 BicD: Microtubule-ass 89.7 49 0.0011 40.3 22.2 22 297-318 98-119 (717)
126 PF08826 DMPK_coil: DMPK coile 89.5 5.7 0.00012 32.3 9.9 45 322-366 16-60 (61)
127 COG4372 Uncharacterized protei 89.4 38 0.00083 37.4 24.2 25 343-367 257-281 (499)
128 PF09789 DUF2353: Uncharacteri 89.4 37 0.0008 37.2 25.1 27 347-373 191-217 (319)
129 PRK10884 SH3 domain-containing 89.4 5.1 0.00011 41.1 12.1 14 301-314 137-150 (206)
130 TIGR02680 conserved hypothetic 89.3 81 0.0018 42.0 26.0 21 688-708 1117-1137(1353)
131 KOG0249 LAR-interacting protei 89.2 56 0.0012 39.0 21.2 20 682-709 756-775 (916)
132 COG5185 HEC1 Protein involved 88.9 46 0.001 37.7 22.8 26 174-199 301-326 (622)
133 PF14197 Cep57_CLD_2: Centroso 88.9 4.8 0.0001 33.6 9.4 62 301-362 3-64 (69)
134 PF10168 Nup88: Nuclear pore c 88.8 46 0.001 40.9 21.7 72 300-372 636-712 (717)
135 PF01576 Myosin_tail_1: Myosin 88.8 0.13 2.8E-06 64.2 0.0 159 209-371 33-220 (859)
136 PF10498 IFT57: Intra-flagella 88.7 18 0.0004 40.4 16.8 17 219-235 186-202 (359)
137 PF05701 WEMBL: Weak chloropla 88.5 60 0.0013 38.5 26.1 36 338-373 295-330 (522)
138 PF04111 APG6: Autophagy prote 88.3 6.7 0.00014 43.1 13.0 74 298-371 45-118 (314)
139 KOG0978 E3 ubiquitin ligase in 88.3 67 0.0015 38.8 37.1 77 298-374 540-616 (698)
140 PF12128 DUF3584: Protein of u 88.1 1E+02 0.0022 40.6 40.9 31 115-145 227-257 (1201)
141 KOG1899 LAR transmembrane tyro 88.1 21 0.00045 41.7 16.6 22 688-709 707-728 (861)
142 TIGR01843 type_I_hlyD type I s 87.9 51 0.0011 37.5 20.8 31 297-327 204-234 (423)
143 PF07111 HCR: Alpha helical co 87.7 70 0.0015 38.3 23.5 18 355-372 245-262 (739)
144 PF08614 ATG16: Autophagy prot 87.4 8.4 0.00018 39.2 12.3 61 297-357 117-177 (194)
145 PF15254 CCDC14: Coiled-coil d 87.1 77 0.0017 38.3 20.9 35 301-335 492-526 (861)
146 KOG0964 Structural maintenance 87.0 90 0.0019 38.8 21.8 26 348-373 470-495 (1200)
147 PF04012 PspA_IM30: PspA/IM30 87.0 41 0.00089 34.8 20.1 76 297-372 99-185 (221)
148 COG2433 Uncharacterized conser 86.6 8.1 0.00018 45.1 12.5 79 295-373 428-509 (652)
149 PF04849 HAP1_N: HAP1 N-termin 86.1 55 0.0012 35.5 23.3 64 305-368 229-292 (306)
150 PF05010 TACC: Transforming ac 85.7 46 0.001 34.2 23.9 45 327-371 150-194 (207)
151 COG2433 Uncharacterized conser 85.1 17 0.00037 42.5 14.2 71 6-76 96-177 (652)
152 KOG4673 Transcription factor T 85.1 91 0.002 37.1 24.9 20 186-205 417-437 (961)
153 TIGR01005 eps_transp_fam exopo 85.0 1.1E+02 0.0024 38.0 23.2 13 34-47 40-52 (754)
154 KOG0964 Structural maintenance 85.0 1.1E+02 0.0024 38.0 22.0 42 21-65 118-163 (1200)
155 KOG0979 Structural maintenance 85.0 1.1E+02 0.0024 38.3 21.2 31 632-662 834-865 (1072)
156 KOG0979 Structural maintenance 84.9 96 0.0021 38.8 20.8 29 21-50 56-88 (1072)
157 KOG0804 Cytoplasmic Zn-finger 84.8 40 0.00086 38.1 16.2 6 11-16 115-120 (493)
158 PF14197 Cep57_CLD_2: Centroso 84.7 15 0.00033 30.7 10.2 66 307-372 2-67 (69)
159 PF09304 Cortex-I_coil: Cortex 84.7 17 0.00038 32.8 11.1 15 302-316 36-50 (107)
160 PF10205 KLRAQ: Predicted coil 84.6 18 0.00039 32.5 11.1 71 301-371 3-73 (102)
161 PF10146 zf-C4H2: Zinc finger- 84.5 49 0.0011 34.6 16.2 24 350-373 79-102 (230)
162 PF13870 DUF4201: Domain of un 84.4 46 0.001 33.2 21.2 41 297-337 85-125 (177)
163 KOG1962 B-cell receptor-associ 84.4 7.6 0.00016 39.8 9.9 59 301-373 149-207 (216)
164 KOG0996 Structural maintenance 84.4 1.3E+02 0.0028 38.3 41.7 11 47-57 250-260 (1293)
165 PF10186 Atg14: UV radiation r 84.4 51 0.0011 35.5 17.6 23 348-370 122-144 (302)
166 PF15619 Lebercilin: Ciliary p 84.4 51 0.0011 33.6 23.9 31 298-328 120-150 (194)
167 PF09755 DUF2046: Uncharacteri 84.3 67 0.0015 34.9 26.2 170 196-381 25-210 (310)
168 COG5185 HEC1 Protein involved 83.7 86 0.0019 35.7 20.5 16 634-649 602-617 (622)
169 PF11559 ADIP: Afadin- and alp 83.6 23 0.00049 34.4 12.8 11 362-372 136-146 (151)
170 cd01378 MYSc_type_I Myosin mot 83.6 0.85 1.8E-05 55.4 3.3 34 1-34 608-648 (674)
171 COG4026 Uncharacterized protei 83.3 15 0.00032 37.4 11.1 23 302-324 155-177 (290)
172 PF05483 SCP-1: Synaptonemal c 83.1 1.1E+02 0.0024 36.6 23.7 37 339-375 588-624 (786)
173 PRK10929 putative mechanosensi 83.1 1.4E+02 0.0031 38.5 22.4 20 352-371 265-284 (1109)
174 PF10481 CENP-F_N: Cenp-F N-te 83.1 33 0.00072 36.1 13.9 49 324-372 74-122 (307)
175 COG1196 Smc Chromosome segrega 83.0 1.7E+02 0.0036 38.5 46.6 25 24-54 124-150 (1163)
176 COG1382 GimC Prefoldin, chaper 83.0 34 0.00073 31.8 12.5 31 341-371 80-110 (119)
177 PRK10698 phage shock protein P 82.9 64 0.0014 33.6 22.2 75 296-370 99-184 (222)
178 KOG0946 ER-Golgi vesicle-tethe 81.8 1.3E+02 0.0029 36.6 20.9 29 346-374 793-821 (970)
179 PLN02939 transferase, transfer 81.7 1.6E+02 0.0034 37.3 21.6 27 754-782 852-879 (977)
180 KOG1103 Predicted coiled-coil 81.6 54 0.0012 35.6 15.1 47 217-267 141-187 (561)
181 TIGR02977 phageshock_pspA phag 81.3 72 0.0016 33.1 22.2 76 295-370 98-184 (219)
182 KOG0249 LAR-interacting protei 81.2 1E+02 0.0022 37.0 18.3 18 211-228 135-152 (916)
183 COG1196 Smc Chromosome segrega 80.9 2E+02 0.0042 37.9 45.0 17 692-708 946-962 (1163)
184 KOG0963 Transcription factor/C 80.7 1.3E+02 0.0028 35.7 28.5 26 212-237 193-218 (629)
185 PF13514 AAA_27: AAA domain 80.2 2E+02 0.0043 37.6 23.9 168 194-374 153-325 (1111)
186 KOG0999 Microtubule-associated 80.1 1.2E+02 0.0027 35.1 27.1 22 297-318 171-192 (772)
187 PF05622 HOOK: HOOK protein; 80.1 0.55 1.2E-05 57.7 0.0 8 23-30 8-15 (713)
188 KOG4360 Uncharacterized coiled 80.1 1.2E+02 0.0026 35.0 18.5 6 651-656 510-515 (596)
189 PF13870 DUF4201: Domain of un 79.9 68 0.0015 32.0 18.4 35 339-373 99-133 (177)
190 PF10146 zf-C4H2: Zinc finger- 79.9 78 0.0017 33.1 15.7 23 345-367 81-103 (230)
191 KOG0962 DNA repair protein RAD 79.7 2E+02 0.0044 37.3 23.9 39 297-335 298-336 (1294)
192 PF06785 UPF0242: Uncharacteri 79.5 99 0.0021 33.6 17.5 20 246-265 98-117 (401)
193 cd01382 MYSc_type_VI Myosin mo 79.5 1.3 2.9E-05 54.1 3.0 34 1-34 653-691 (717)
194 PF09728 Taxilin: Myosin-like 78.7 1.1E+02 0.0024 33.6 25.2 32 342-373 234-265 (309)
195 KOG4673 Transcription factor T 78.5 1.6E+02 0.0034 35.3 29.1 13 210-222 455-467 (961)
196 PLN03188 kinesin-12 family pro 78.4 2.2E+02 0.0047 36.9 22.5 62 297-358 1174-1238(1320)
197 TIGR03007 pepcterm_ChnLen poly 78.2 1.5E+02 0.0032 34.8 22.4 12 34-46 37-48 (498)
198 PF14915 CCDC144C: CCDC144C pr 78.0 1.1E+02 0.0023 33.1 25.6 75 295-369 220-302 (305)
199 PF15397 DUF4618: Domain of un 77.5 1E+02 0.0022 32.7 23.6 26 348-373 189-214 (258)
200 PF01576 Myosin_tail_1: Myosin 77.5 0.74 1.6E-05 57.6 0.0 21 300-320 289-309 (859)
201 PRK11281 hypothetical protein; 77.3 2.1E+02 0.0045 37.2 21.3 22 352-373 285-306 (1113)
202 PF15254 CCDC14: Coiled-coil d 76.8 1.6E+02 0.0034 35.9 18.4 18 249-266 429-446 (861)
203 KOG2129 Uncharacterized conser 76.7 1.3E+02 0.0029 33.6 21.5 30 296-325 253-282 (552)
204 smart00242 MYSc Myosin. Large 76.6 1.9 4.1E-05 52.5 3.2 34 1-34 611-651 (677)
205 PF03962 Mnd1: Mnd1 family; I 76.1 28 0.00062 35.2 10.9 77 297-373 63-149 (188)
206 PRK11281 hypothetical protein; 75.9 2.4E+02 0.0052 36.6 21.2 24 296-319 192-215 (1113)
207 KOG1003 Actin filament-coating 75.7 94 0.002 31.4 22.9 75 297-371 124-198 (205)
208 PF09738 DUF2051: Double stran 75.7 67 0.0015 35.0 14.3 66 300-365 102-167 (302)
209 PF12777 MT: Microtubule-bindi 75.1 1.4E+02 0.0031 33.2 20.6 49 323-371 220-268 (344)
210 PF06160 EzrA: Septation ring 75.0 1.9E+02 0.0041 34.6 23.1 79 295-373 343-428 (560)
211 PF11932 DUF3450: Protein of u 75.0 41 0.0009 35.6 12.5 55 297-351 43-97 (251)
212 KOG0963 Transcription factor/C 74.4 1.9E+02 0.0042 34.3 24.6 22 352-373 317-338 (629)
213 KOG0804 Cytoplasmic Zn-finger 74.4 1.2E+02 0.0027 34.4 15.8 15 344-358 434-448 (493)
214 KOG0982 Centrosomal protein Nu 74.3 1.6E+02 0.0034 33.3 24.0 11 361-371 376-386 (502)
215 TIGR02680 conserved hypothetic 74.3 3.1E+02 0.0067 36.7 31.1 17 17-33 615-631 (1353)
216 KOG4427 E3 ubiquitin protein l 74.1 25 0.00054 42.0 10.9 60 60-125 28-88 (1096)
217 PF13851 GAS: Growth-arrest sp 74.0 1.1E+02 0.0024 31.3 23.4 38 300-337 90-127 (201)
218 PF07106 TBPIP: Tat binding pr 73.9 18 0.00039 35.9 8.8 67 295-373 71-137 (169)
219 KOG4593 Mitotic checkpoint pro 73.4 2.1E+02 0.0046 34.4 29.3 27 741-768 629-662 (716)
220 PF15066 CAGE1: Cancer-associa 73.4 1.7E+02 0.0038 33.4 18.9 14 215-228 324-337 (527)
221 PF07889 DUF1664: Protein of u 73.3 50 0.0011 31.1 10.9 59 305-363 63-121 (126)
222 PF03962 Mnd1: Mnd1 family; I 73.0 1E+02 0.0022 31.2 14.1 24 211-234 72-95 (188)
223 PF07106 TBPIP: Tat binding pr 72.9 21 0.00046 35.4 9.1 27 298-324 81-107 (169)
224 KOG3684 Ca2+-activated K+ chan 72.6 1.7E+02 0.0037 33.5 16.5 27 153-179 359-385 (489)
225 PF10168 Nup88: Nuclear pore c 72.5 2.5E+02 0.0053 34.7 24.0 26 244-269 636-661 (717)
226 PF05911 DUF869: Plant protein 72.5 2.5E+02 0.0054 34.8 24.4 78 295-373 119-204 (769)
227 KOG0288 WD40 repeat protein Ti 72.4 1.1E+02 0.0025 34.3 14.8 13 503-515 244-256 (459)
228 PF10212 TTKRSYEDQ: Predicted 72.1 2E+02 0.0044 33.5 20.0 29 344-372 486-514 (518)
229 KOG4674 Uncharacterized conser 71.9 3.7E+02 0.008 36.5 37.4 67 212-278 763-829 (1822)
230 TIGR03185 DNA_S_dndD DNA sulfu 71.3 2.5E+02 0.0054 34.3 23.6 39 335-373 425-463 (650)
231 KOG1899 LAR transmembrane tyro 70.5 1.3E+02 0.0027 35.6 15.2 73 301-373 179-259 (861)
232 PF02403 Seryl_tRNA_N: Seryl-t 70.3 48 0.001 30.0 10.2 73 295-371 28-100 (108)
233 KOG0165 Microtubule-associated 69.2 28 0.00062 41.6 10.0 138 65-203 531-671 (1023)
234 PF09304 Cortex-I_coil: Cortex 69.2 90 0.002 28.4 15.7 31 298-328 46-76 (107)
235 PF10498 IFT57: Intra-flagella 68.9 2E+02 0.0044 32.3 17.1 41 19-59 68-112 (359)
236 PF15619 Lebercilin: Ciliary p 68.7 1.4E+02 0.0031 30.4 24.4 27 305-331 120-146 (194)
237 KOG4809 Rab6 GTPase-interactin 68.2 2.4E+02 0.0053 32.9 20.3 16 86-101 152-167 (654)
238 PF05622 HOOK: HOOK protein; 67.4 1.8 3.8E-05 53.3 0.0 14 249-262 293-306 (713)
239 PF15290 Syntaphilin: Golgi-lo 66.5 1.7E+02 0.0036 31.3 13.9 24 298-321 119-142 (305)
240 PRK13729 conjugal transfer pil 66.3 23 0.00049 40.7 8.4 19 748-766 444-462 (475)
241 KOG0243 Kinesin-like protein [ 66.2 3.7E+02 0.008 34.3 20.0 15 254-268 448-462 (1041)
242 KOG4427 E3 ubiquitin protein l 66.0 18 0.00039 43.2 7.5 20 110-129 30-49 (1096)
243 KOG4809 Rab6 GTPase-interactin 66.0 2.7E+02 0.0058 32.6 19.1 78 295-372 330-407 (654)
244 PF08172 CASP_C: CASP C termin 65.7 65 0.0014 34.1 11.3 38 336-373 91-128 (248)
245 PF05266 DUF724: Protein of un 65.7 76 0.0016 32.2 11.3 21 345-365 159-179 (190)
246 PF10234 Cluap1: Clusterin-ass 65.5 2E+02 0.0042 30.9 15.0 12 352-363 225-236 (267)
247 PF15456 Uds1: Up-regulated Du 64.9 1.2E+02 0.0026 28.6 11.6 79 294-373 20-109 (124)
248 PF13863 DUF4200: Domain of un 64.8 1.2E+02 0.0026 28.2 17.6 33 341-373 77-109 (126)
249 PF05557 MAD: Mitotic checkpoi 64.5 2.2 4.7E-05 52.6 0.0 20 249-268 307-326 (722)
250 PF09730 BicD: Microtubule-ass 64.2 3.5E+02 0.0075 33.3 21.8 25 297-321 122-146 (717)
251 PF10224 DUF2205: Predicted co 63.8 36 0.00078 29.4 7.2 40 334-373 19-58 (80)
252 PF15294 Leu_zip: Leucine zipp 63.8 2.1E+02 0.0046 30.7 16.2 20 209-228 133-152 (278)
253 PF05266 DUF724: Protein of un 63.8 1.2E+02 0.0027 30.7 12.4 23 350-372 157-179 (190)
254 PF05529 Bap31: B-cell recepto 63.3 58 0.0012 33.0 10.1 15 357-371 166-180 (192)
255 KOG0942 E3 ubiquitin protein l 63.2 8.9 0.00019 46.7 4.6 30 154-183 25-54 (1001)
256 KOG0946 ER-Golgi vesicle-tethe 63.0 3.7E+02 0.0079 33.1 23.4 29 343-371 853-881 (970)
257 KOG2077 JNK/SAPK-associated pr 62.4 66 0.0014 37.3 10.9 78 297-374 302-379 (832)
258 PF10267 Tmemb_cc2: Predicted 62.4 2.8E+02 0.006 31.5 16.3 20 346-365 299-318 (395)
259 PF07393 Sec10: Exocyst comple 62.3 2.3E+02 0.005 35.0 17.0 122 629-761 574-698 (710)
260 PF14915 CCDC144C: CCDC144C pr 62.3 2.3E+02 0.005 30.6 28.4 29 346-374 208-236 (305)
261 PF10205 KLRAQ: Predicted coil 62.1 1.2E+02 0.0027 27.4 10.7 67 307-373 2-68 (102)
262 PF09744 Jnk-SapK_ap_N: JNK_SA 62.1 1.2E+02 0.0026 29.8 11.5 77 296-375 36-112 (158)
263 PF14389 Lzipper-MIP1: Leucine 61.5 71 0.0015 28.1 8.9 32 214-245 7-38 (88)
264 PF07851 TMPIT: TMPIT-like pro 60.8 1.2E+02 0.0026 33.5 12.3 54 297-350 5-58 (330)
265 PF12329 TMF_DNA_bd: TATA elem 60.8 1E+02 0.0023 26.1 10.7 14 297-310 13-26 (74)
266 COG3883 Uncharacterized protei 60.2 2.4E+02 0.0052 30.1 26.1 65 209-277 39-103 (265)
267 TIGR00634 recN DNA repair prot 60.0 3.7E+02 0.008 32.2 21.4 26 347-372 348-373 (563)
268 TIGR03752 conj_TIGR03752 integ 60.0 92 0.002 35.9 11.6 11 696-706 423-433 (472)
269 PF05262 Borrelia_P83: Borreli 59.7 3.4E+02 0.0074 31.7 19.1 19 45-63 65-83 (489)
270 PF05837 CENP-H: Centromere pr 59.7 89 0.0019 28.4 9.6 69 304-373 4-72 (106)
271 PF05384 DegS: Sensor protein 59.3 1.9E+02 0.004 28.5 21.5 26 244-269 24-49 (159)
272 PF04102 SlyX: SlyX; InterPro 59.1 52 0.0011 27.5 7.3 27 347-373 20-46 (69)
273 KOG4005 Transcription factor X 59.0 1.6E+02 0.0034 30.6 11.8 16 213-228 88-103 (292)
274 KOG2129 Uncharacterized conser 58.7 3.1E+02 0.0067 30.9 22.7 32 297-328 247-278 (552)
275 PRK04406 hypothetical protein; 58.7 77 0.0017 27.0 8.3 9 361-369 41-49 (75)
276 KOG3433 Protein involved in me 58.5 1.1E+02 0.0024 30.5 10.3 34 297-330 75-108 (203)
277 PF04880 NUDE_C: NUDE protein, 57.7 16 0.00035 36.0 4.7 46 319-368 2-47 (166)
278 TIGR02338 gimC_beta prefoldin, 57.0 1.6E+02 0.0034 26.9 12.1 26 344-369 80-105 (110)
279 TIGR03752 conj_TIGR03752 integ 57.0 73 0.0016 36.6 10.3 12 635-646 424-435 (472)
280 KOG4403 Cell surface glycoprot 56.7 3.4E+02 0.0074 30.7 22.5 12 65-76 117-128 (575)
281 PF05557 MAD: Mitotic checkpoi 56.4 3.7 8E-05 50.6 0.0 12 753-764 653-664 (722)
282 KOG0165 Microtubule-associated 55.7 75 0.0016 38.3 10.2 138 35-174 248-391 (1023)
283 KOG4657 Uncharacterized conser 55.5 1.9E+02 0.0041 29.9 11.7 27 344-370 92-118 (246)
284 PF10458 Val_tRNA-synt_C: Valy 55.5 57 0.0012 26.9 7.0 26 302-327 3-28 (66)
285 PF13094 CENP-Q: CENP-Q, a CEN 55.3 91 0.002 30.5 9.7 38 296-333 20-57 (160)
286 KOG4603 TBP-1 interacting prot 55.2 1.3E+02 0.0028 29.6 10.0 66 295-372 78-143 (201)
287 TIGR01000 bacteriocin_acc bact 54.8 3.9E+02 0.0086 30.9 24.1 22 350-371 289-310 (457)
288 PF15188 CCDC-167: Coiled-coil 54.4 73 0.0016 27.8 7.5 24 303-326 5-28 (85)
289 PF11932 DUF3450: Protein of u 54.3 2.9E+02 0.0063 29.2 17.0 35 299-333 66-100 (251)
290 PF10805 DUF2730: Protein of u 54.3 1.2E+02 0.0026 27.7 9.4 14 348-361 75-88 (106)
291 PF07851 TMPIT: TMPIT-like pro 54.3 1.2E+02 0.0026 33.4 11.1 26 662-687 270-295 (330)
292 COG5261 IQG1 Protein involved 54.2 37 0.00081 41.2 7.6 83 63-150 315-423 (1054)
293 KOG1937 Uncharacterized conser 54.1 3.9E+02 0.0084 30.6 21.1 31 344-374 388-418 (521)
294 PF09403 FadA: Adhesion protei 54.0 2E+02 0.0043 27.2 15.2 17 348-364 103-119 (126)
295 cd00632 Prefoldin_beta Prefold 54.0 1.7E+02 0.0037 26.4 12.2 22 347-368 79-100 (105)
296 KOG0288 WD40 repeat protein Ti 53.9 3.7E+02 0.0081 30.4 14.7 12 220-231 11-22 (459)
297 KOG2891 Surface glycoprotein [ 53.9 2.9E+02 0.0064 29.2 17.8 10 7-16 18-27 (445)
298 KOG4807 F-actin binding protei 53.8 3.6E+02 0.0077 30.1 22.9 20 352-371 519-538 (593)
299 smart00338 BRLZ basic region l 53.8 1.2E+02 0.0026 24.7 9.1 36 339-374 27-62 (65)
300 KOG0993 Rab5 GTPase effector R 53.7 3.7E+02 0.008 30.3 15.7 136 235-370 16-187 (542)
301 KOG0162 Myosin class I heavy c 53.5 49 0.0011 39.6 8.3 27 51-77 517-543 (1106)
302 KOG2751 Beclin-like protein [S 53.2 3.7E+02 0.008 30.6 14.5 20 352-371 246-265 (447)
303 cd00632 Prefoldin_beta Prefold 53.2 1.7E+02 0.0038 26.3 11.7 30 344-373 69-98 (105)
304 COG1842 PspA Phage shock prote 53.0 2.9E+02 0.0063 28.8 21.4 18 352-369 166-183 (225)
305 PF12761 End3: Actin cytoskele 52.9 1.1E+02 0.0023 31.1 9.5 30 343-372 165-194 (195)
306 PRK10361 DNA recombination pro 52.5 4.4E+02 0.0095 30.8 27.0 24 307-330 137-160 (475)
307 KOG3478 Prefoldin subunit 6, K 52.4 1.9E+02 0.004 26.4 13.3 23 340-362 85-107 (120)
308 COG1340 Uncharacterized archae 52.3 3.4E+02 0.0074 29.4 26.9 18 301-318 163-180 (294)
309 KOG0239 Kinesin (KAR3 subfamil 52.3 5.3E+02 0.011 31.6 18.1 15 359-373 300-314 (670)
310 PF05529 Bap31: B-cell recepto 52.1 82 0.0018 31.8 9.1 69 299-367 121-190 (192)
311 PRK10929 putative mechanosensi 51.9 6.7E+02 0.014 32.7 23.5 26 295-320 172-197 (1109)
312 KOG4572 Predicted DNA-binding 51.6 5.5E+02 0.012 31.6 22.3 9 673-681 1327-1335(1424)
313 PF02403 Seryl_tRNA_N: Seryl-t 50.8 1.7E+02 0.0036 26.5 10.0 20 350-369 72-91 (108)
314 PRK10361 DNA recombination pro 50.8 4.6E+02 0.01 30.5 28.4 18 356-373 169-186 (475)
315 PF01166 TSC22: TSC-22/dip/bun 50.8 25 0.00054 28.1 3.7 30 345-374 14-43 (59)
316 PF01920 Prefoldin_2: Prefoldi 50.6 1.8E+02 0.0039 25.8 12.7 29 298-326 7-35 (106)
317 KOG4364 Chromatin assembly fac 50.4 5.3E+02 0.011 31.1 17.6 13 821-833 785-797 (811)
318 PF06818 Fez1: Fez1; InterPro 50.3 2.6E+02 0.0056 28.6 11.9 35 340-374 68-102 (202)
319 PF15188 CCDC-167: Coiled-coil 50.0 83 0.0018 27.5 7.2 26 348-373 39-64 (85)
320 PF05483 SCP-1: Synaptonemal c 49.9 5.4E+02 0.012 31.1 24.5 8 35-42 60-67 (786)
321 PRK03947 prefoldin subunit alp 49.8 2.4E+02 0.0051 26.8 11.8 21 349-369 105-125 (140)
322 PF15290 Syntaphilin: Golgi-lo 49.7 3.6E+02 0.0077 28.9 14.1 11 248-258 90-100 (305)
323 TIGR03017 EpsF chain length de 49.6 4.6E+02 0.0099 30.1 24.2 14 33-47 36-49 (444)
324 COG0419 SbcC ATPase involved i 49.3 6.7E+02 0.015 32.0 25.4 38 637-674 740-777 (908)
325 KOG0239 Kinesin (KAR3 subfamil 49.3 5.8E+02 0.013 31.3 18.1 12 458-469 415-426 (670)
326 PF06046 Sec6: Exocyst complex 49.3 3.1E+02 0.0068 32.7 14.9 146 633-785 397-549 (566)
327 COG0419 SbcC ATPase involved i 49.1 6.8E+02 0.015 31.9 29.2 14 772-785 854-867 (908)
328 PF10046 BLOC1_2: Biogenesis o 48.9 2E+02 0.0043 25.8 11.3 27 341-367 69-95 (99)
329 PRK00409 recombination and DNA 48.6 5.8E+02 0.013 32.0 17.2 14 45-58 145-158 (782)
330 TIGR03495 phage_LysB phage lys 48.5 2.5E+02 0.0055 26.8 11.5 29 346-374 69-97 (135)
331 PRK04406 hypothetical protein; 48.3 1.4E+02 0.0031 25.3 8.3 17 350-366 37-53 (75)
332 KOG0942 E3 ubiquitin protein l 48.1 39 0.00085 41.4 6.6 34 173-206 21-54 (1001)
333 COG2900 SlyX Uncharacterized p 47.9 1.3E+02 0.0027 25.4 7.5 19 352-370 36-54 (72)
334 PF04102 SlyX: SlyX; InterPro 47.4 97 0.0021 25.8 7.1 20 351-370 31-50 (69)
335 PF05377 FlaC_arch: Flagella a 47.3 85 0.0018 25.0 6.2 17 301-317 5-21 (55)
336 PF10211 Ax_dynein_light: Axon 47.1 3.2E+02 0.007 27.6 16.3 14 137-150 75-88 (189)
337 PF06428 Sec2p: GDP/GTP exchan 47.0 20 0.00043 32.3 3.1 23 297-319 9-31 (100)
338 PRK02119 hypothetical protein; 46.8 1.4E+02 0.003 25.2 8.0 16 351-366 36-51 (73)
339 COG1382 GimC Prefoldin, chaper 46.7 2.5E+02 0.0054 26.2 12.4 33 341-373 73-105 (119)
340 PRK00106 hypothetical protein; 46.6 5.7E+02 0.012 30.4 22.2 142 213-364 21-162 (535)
341 PF14389 Lzipper-MIP1: Leucine 46.2 74 0.0016 28.0 6.5 30 345-374 54-83 (88)
342 PRK03947 prefoldin subunit alp 46.0 2.7E+02 0.0058 26.4 11.8 32 340-371 103-134 (140)
343 TIGR01069 mutS2 MutS2 family p 45.5 5.2E+02 0.011 32.3 16.1 16 44-59 139-154 (771)
344 PF06632 XRCC4: DNA double-str 45.2 3.3E+02 0.0072 30.3 12.9 72 300-371 141-213 (342)
345 KOG2264 Exostosin EXT1L [Signa 45.0 1.6E+02 0.0035 34.3 10.4 24 350-373 126-149 (907)
346 PRK09343 prefoldin subunit bet 45.0 2.6E+02 0.0057 26.0 12.7 34 340-373 80-113 (121)
347 PHA03011 hypothetical protein; 44.9 1.8E+02 0.0038 26.0 8.4 18 345-362 99-116 (120)
348 PF05377 FlaC_arch: Flagella a 44.8 85 0.0019 25.0 5.9 11 353-363 22-32 (55)
349 PRK13729 conjugal transfer pil 44.7 92 0.002 35.9 8.6 44 316-359 75-118 (475)
350 PF11180 DUF2968: Protein of u 44.5 3.5E+02 0.0076 27.4 13.3 32 343-374 152-183 (192)
351 PRK05431 seryl-tRNA synthetase 44.3 1.2E+02 0.0027 34.8 9.9 71 297-371 29-99 (425)
352 PF01920 Prefoldin_2: Prefoldi 44.3 2.3E+02 0.005 25.1 12.4 19 347-365 78-96 (106)
353 PLN02678 seryl-tRNA synthetase 44.2 1.3E+02 0.0028 34.9 9.9 72 297-372 34-105 (448)
354 PRK00409 recombination and DNA 44.2 5.6E+02 0.012 32.1 16.2 12 43-54 222-233 (782)
355 PF15035 Rootletin: Ciliary ro 44.2 1.4E+02 0.0031 30.0 9.1 60 311-370 61-120 (182)
356 PF09738 DUF2051: Double stran 44.2 3.5E+02 0.0076 29.6 12.7 64 305-368 100-163 (302)
357 PF06632 XRCC4: DNA double-str 43.9 2.6E+02 0.0057 31.1 11.9 69 297-365 145-214 (342)
358 PF04012 PspA_IM30: PspA/IM30 43.9 3.8E+02 0.0082 27.6 19.6 19 250-268 54-72 (221)
359 PF01486 K-box: K-box region; 43.4 2.4E+02 0.0052 25.1 10.4 79 294-374 10-97 (100)
360 PF00170 bZIP_1: bZIP transcri 43.1 1.8E+02 0.0039 23.6 9.1 31 342-372 30-60 (64)
361 PRK00295 hypothetical protein; 43.0 1.8E+02 0.004 24.1 8.1 21 350-370 24-44 (68)
362 PF04582 Reo_sigmaC: Reovirus 42.9 51 0.0011 36.1 6.0 76 299-374 80-155 (326)
363 PRK02793 phi X174 lysis protei 42.6 1.6E+02 0.0035 24.8 7.8 17 351-367 35-51 (72)
364 PF14992 TMCO5: TMCO5 family 42.5 2.9E+02 0.0064 29.7 11.4 128 242-373 13-144 (280)
365 PF03961 DUF342: Protein of un 42.4 1.5E+02 0.0033 34.4 10.4 72 300-371 331-408 (451)
366 PHA02414 hypothetical protein 42.2 2.3E+02 0.005 25.2 8.6 25 345-369 57-81 (111)
367 PF06156 DUF972: Protein of un 42.1 1.6E+02 0.0034 27.0 8.2 28 346-373 23-50 (107)
368 COG0497 RecN ATPase involved i 42.0 6.7E+02 0.015 29.9 21.4 29 21-49 72-110 (557)
369 PF10211 Ax_dynein_light: Axon 41.7 3.9E+02 0.0084 27.0 17.9 29 301-329 125-153 (189)
370 KOG0377 Protein serine/threoni 41.5 33 0.00073 38.5 4.4 27 717-743 564-590 (631)
371 PF10224 DUF2205: Predicted co 41.0 2.4E+02 0.0052 24.4 8.7 27 305-331 18-44 (80)
372 PF06548 Kinesin-related: Kine 40.9 6.1E+02 0.013 29.1 20.0 17 300-316 407-423 (488)
373 TIGR02231 conserved hypothetic 40.8 2.6E+02 0.0056 33.1 12.2 27 345-371 145-171 (525)
374 PF06156 DUF972: Protein of un 40.8 1.4E+02 0.003 27.4 7.6 18 348-365 39-56 (107)
375 PRK04325 hypothetical protein; 40.3 2E+02 0.0043 24.4 8.0 12 353-364 38-49 (74)
376 KOG3433 Protein involved in me 40.2 2.4E+02 0.0052 28.2 9.4 44 296-339 81-124 (203)
377 PRK10246 exonuclease subunit S 40.0 9.7E+02 0.021 31.2 25.1 27 296-322 777-803 (1047)
378 PF05278 PEARLI-4: Arabidopsis 39.3 4.9E+02 0.011 27.9 12.4 78 297-374 180-257 (269)
379 PTZ00233 variable surface prot 39.3 17 0.00037 42.2 1.9 52 751-811 443-499 (509)
380 TIGR02231 conserved hypothetic 38.8 3.2E+02 0.007 32.3 12.6 80 295-374 70-167 (525)
381 PRK00736 hypothetical protein; 38.8 2.1E+02 0.0046 23.8 7.8 11 354-364 35-45 (68)
382 PF07989 Microtub_assoc: Micro 38.7 2.5E+02 0.0054 23.9 9.7 26 295-320 6-31 (75)
383 COG1730 GIM5 Predicted prefold 38.1 3.8E+02 0.0083 25.9 12.7 17 353-369 116-132 (145)
384 KOG4005 Transcription factor X 38.1 2.4E+02 0.0052 29.3 9.4 12 495-506 211-222 (292)
385 KOG3650 Predicted coiled-coil 37.6 1.1E+02 0.0024 27.1 6.0 39 335-373 60-98 (120)
386 TIGR00414 serS seryl-tRNA synt 37.2 2.3E+02 0.005 32.5 10.6 33 742-775 379-413 (418)
387 TIGR03545 conserved hypothetic 36.8 5.4E+02 0.012 30.7 13.8 10 596-605 532-541 (555)
388 PRK13169 DNA replication intia 36.6 1.8E+02 0.0038 26.8 7.6 29 345-373 22-50 (110)
389 PF13747 DUF4164: Domain of un 36.4 3E+02 0.0065 24.2 12.4 27 298-324 41-67 (89)
390 KOG4302 Microtubule-associated 36.0 8.8E+02 0.019 29.5 18.8 22 211-232 64-85 (660)
391 PLN03188 kinesin-12 family pro 36.0 1.1E+03 0.025 30.8 29.8 18 348-365 1221-1238(1320)
392 PF09728 Taxilin: Myosin-like 35.8 6.3E+02 0.014 27.7 37.1 15 135-149 72-86 (309)
393 KOG2991 Splicing regulator [RN 35.8 5.5E+02 0.012 27.1 21.3 79 295-373 216-299 (330)
394 TIGR02894 DNA_bind_RsfA transc 35.8 2.6E+02 0.0056 27.5 8.9 29 300-328 101-129 (161)
395 PF12761 End3: Actin cytoskele 35.7 4E+02 0.0087 27.1 10.6 19 250-268 99-117 (195)
396 KOG4603 TBP-1 interacting prot 35.6 3.8E+02 0.0083 26.5 9.9 12 357-368 121-132 (201)
397 PF10226 DUF2216: Uncharacteri 34.9 2.5E+02 0.0054 28.3 8.8 59 315-373 14-76 (195)
398 COG5570 Uncharacterized small 34.9 82 0.0018 24.6 4.2 20 347-366 35-54 (57)
399 PF06008 Laminin_I: Laminin Do 34.7 5.8E+02 0.013 27.1 22.9 21 306-326 188-208 (264)
400 PF08763 Ca_chan_IQ: Voltage g 34.7 47 0.001 23.8 2.7 18 111-128 10-27 (35)
401 PRK13169 DNA replication intia 34.7 2.3E+02 0.0051 26.0 8.1 15 348-362 39-53 (110)
402 COG2900 SlyX Uncharacterized p 34.6 2.8E+02 0.0061 23.4 8.1 21 350-370 27-47 (72)
403 KOG4593 Mitotic checkpoint pro 34.6 9.2E+02 0.02 29.3 29.5 11 361-371 301-311 (716)
404 PRK10869 recombination and rep 34.0 8.8E+02 0.019 28.9 21.8 28 346-373 342-369 (553)
405 KOG2010 Double stranded RNA bi 34.0 1.7E+02 0.0038 31.7 8.0 64 302-365 139-202 (405)
406 PF05700 BCAS2: Breast carcino 33.7 5.6E+02 0.012 26.5 17.0 74 297-373 137-210 (221)
407 PF10474 DUF2451: Protein of u 33.5 5.9E+02 0.013 26.7 15.4 49 630-678 89-141 (234)
408 PLN02939 transferase, transfer 33.3 1.1E+03 0.025 30.1 21.7 13 720-732 851-863 (977)
409 KOG2264 Exostosin EXT1L [Signa 33.1 2.6E+02 0.0056 32.7 9.7 26 300-325 97-122 (907)
410 PF11544 Spc42p: Spindle pole 33.1 2.6E+02 0.0055 23.9 7.3 33 340-372 14-46 (76)
411 PF07058 Myosin_HC-like: Myosi 33.0 6.7E+02 0.015 27.3 16.4 20 244-263 32-51 (351)
412 PF09731 Mitofilin: Mitochondr 33.0 9.2E+02 0.02 28.8 24.0 8 455-462 463-470 (582)
413 PF06810 Phage_GP20: Phage min 32.7 2.9E+02 0.0063 27.0 9.0 23 298-320 22-44 (155)
414 PLN02320 seryl-tRNA synthetase 32.7 2.2E+02 0.0047 33.5 9.4 70 298-372 95-164 (502)
415 KOG0972 Huntingtin interacting 32.7 6.6E+02 0.014 27.1 15.4 9 24-32 65-73 (384)
416 KOG4001 Axonemal dynein light 32.2 4.3E+02 0.0093 26.8 9.9 68 295-362 184-252 (259)
417 COG0172 SerS Seryl-tRNA synthe 32.2 2.5E+02 0.0054 32.2 9.6 75 295-372 28-102 (429)
418 PHA03011 hypothetical protein; 32.1 3.5E+02 0.0077 24.2 8.2 54 314-367 61-114 (120)
419 KOG2629 Peroxisomal membrane a 31.7 4.7E+02 0.01 28.2 10.7 26 348-373 164-189 (300)
420 smart00502 BBC B-Box C-termina 31.6 3.9E+02 0.0085 24.1 16.1 16 301-316 77-92 (127)
421 TIGR00293 prefoldin, archaeal 31.5 4.2E+02 0.0092 24.5 11.7 22 348-369 96-117 (126)
422 PF12777 MT: Microtubule-bindi 31.5 7.6E+02 0.016 27.4 21.7 26 200-225 7-32 (344)
423 PRK00846 hypothetical protein; 31.2 3.4E+02 0.0074 23.3 8.7 30 344-373 26-55 (77)
424 cd00584 Prefoldin_alpha Prefol 30.8 4.4E+02 0.0096 24.5 12.2 27 345-371 94-120 (129)
425 TIGR01000 bacteriocin_acc bact 30.5 9E+02 0.019 28.0 24.5 29 342-370 288-316 (457)
426 PRK10636 putative ABC transpor 29.9 2.8E+02 0.0061 33.7 10.4 16 350-365 610-625 (638)
427 TIGR03495 phage_LysB phage lys 29.9 4.6E+02 0.01 25.0 9.5 13 344-356 81-93 (135)
428 COG1842 PspA Phage shock prote 29.8 6.6E+02 0.014 26.2 18.7 22 348-369 116-137 (225)
429 KOG0377 Protein serine/threoni 29.4 68 0.0015 36.2 4.3 22 158-179 17-38 (631)
430 PF00170 bZIP_1: bZIP transcri 29.3 3.1E+02 0.0067 22.2 10.2 12 217-228 28-39 (64)
431 PF10174 Cast: RIM-binding pro 29.3 1.2E+03 0.026 29.1 35.5 75 297-371 466-540 (775)
432 PF05335 DUF745: Protein of un 29.1 6.2E+02 0.013 25.6 17.6 14 308-321 114-127 (188)
433 cd01387 MYSc_type_XV Myosin mo 29.1 37 0.00081 41.4 2.6 17 1-17 613-629 (677)
434 PF14282 FlxA: FlxA-like prote 28.9 3.4E+02 0.0074 24.6 8.3 30 344-373 50-79 (106)
435 COG1730 GIM5 Predicted prefold 28.7 5.5E+02 0.012 24.9 13.9 37 295-331 93-129 (145)
436 PRK13182 racA polar chromosome 28.7 3.7E+02 0.008 26.9 9.1 23 350-372 123-145 (175)
437 PF15294 Leu_zip: Leucine zipp 28.2 7.9E+02 0.017 26.5 19.6 47 299-345 128-174 (278)
438 PF05335 DUF745: Protein of un 28.1 6.5E+02 0.014 25.5 17.5 67 307-373 106-172 (188)
439 KOG0018 Structural maintenance 28.0 1.4E+03 0.03 29.4 35.7 33 804-839 1074-1107(1141)
440 PF03148 Tektin: Tektin family 27.9 9.2E+02 0.02 27.3 31.5 28 206-233 69-96 (384)
441 PF08581 Tup_N: Tup N-terminal 27.7 4E+02 0.0086 23.0 11.4 9 359-367 64-72 (79)
442 KOG4571 Activating transcripti 27.6 3.9E+02 0.0085 28.8 9.4 35 296-330 255-289 (294)
443 PF04899 MbeD_MobD: MbeD/MobD 27.4 3.8E+02 0.0081 22.6 9.2 59 306-364 10-68 (70)
444 PF02841 GBP_C: Guanylate-bind 27.4 8.2E+02 0.018 26.5 15.7 15 350-364 282-296 (297)
445 PF03961 DUF342: Protein of un 27.3 3.5E+02 0.0075 31.4 10.1 68 306-373 330-403 (451)
446 PF06810 Phage_GP20: Phage min 27.2 5.4E+02 0.012 25.2 9.8 19 306-324 23-41 (155)
447 PF02183 HALZ: Homeobox associ 27.1 2.8E+02 0.0061 21.1 6.1 40 308-347 3-42 (45)
448 PF13514 AAA_27: AAA domain 27.0 1.5E+03 0.033 29.5 37.6 304 61-371 607-929 (1111)
449 PF14992 TMCO5: TMCO5 family 26.6 8.4E+02 0.018 26.3 13.3 158 213-371 9-170 (280)
450 KOG0837 Transcriptional activa 26.6 3.8E+02 0.0083 28.4 8.9 63 192-265 204-266 (279)
451 PF09755 DUF2046: Uncharacteri 26.6 8.8E+02 0.019 26.6 33.4 213 149-370 26-279 (310)
452 KOG2077 JNK/SAPK-associated pr 26.3 1.1E+03 0.025 27.8 15.7 131 198-328 301-431 (832)
453 KOG1937 Uncharacterized conser 26.2 1E+03 0.023 27.3 20.9 167 182-363 253-428 (521)
454 PRK10803 tol-pal system protei 26.0 2.4E+02 0.0052 30.1 7.9 53 322-374 38-90 (263)
455 PRK00888 ftsB cell division pr 26.0 2E+02 0.0043 26.2 6.1 44 332-375 28-71 (105)
456 KOG4403 Cell surface glycoprot 25.8 1E+03 0.022 27.1 19.1 152 175-357 212-380 (575)
457 KOG0240 Kinesin (SMY1 subfamil 25.7 1.2E+03 0.026 27.8 17.6 141 203-370 398-542 (607)
458 PF04799 Fzo_mitofusin: fzo-li 25.5 5.8E+02 0.013 25.4 9.6 62 299-360 105-166 (171)
459 cd00890 Prefoldin Prefoldin is 25.4 5.3E+02 0.012 23.7 12.2 75 299-373 2-122 (129)
460 COG4477 EzrA Negative regulato 25.2 1.2E+03 0.025 27.6 26.5 198 164-374 193-425 (570)
461 PF15175 SPATA24: Spermatogene 25.2 6.3E+02 0.014 24.4 14.0 112 246-367 2-115 (153)
462 PF04899 MbeD_MobD: MbeD/MobD 25.1 4.2E+02 0.009 22.3 10.2 65 307-371 3-68 (70)
463 TIGR03319 YmdA_YtgF conserved 25.0 1.2E+03 0.026 27.6 25.9 170 185-369 12-183 (514)
464 PF10267 Tmemb_cc2: Predicted 25.0 1.1E+03 0.023 27.0 16.4 105 203-323 214-318 (395)
465 PF03915 AIP3: Actin interacti 24.8 6.7E+02 0.014 28.9 11.4 118 247-365 151-273 (424)
466 PRK11519 tyrosine kinase; Prov 24.8 1.4E+03 0.03 28.3 21.0 158 181-358 240-397 (719)
467 PF12004 DUF3498: Domain of un 24.7 24 0.00053 40.9 0.0 125 214-347 368-495 (495)
468 KOG4797 Transcriptional regula 24.6 1.5E+02 0.0033 26.7 4.8 30 344-373 66-95 (123)
469 PF13094 CENP-Q: CENP-Q, a CEN 24.6 5.7E+02 0.012 24.8 9.7 64 311-374 21-84 (160)
470 PF06103 DUF948: Bacterial pro 24.5 4.7E+02 0.01 22.7 10.6 69 298-366 21-89 (90)
471 cd01386 MYSc_type_XVIII Myosin 24.5 33 0.00072 42.5 1.0 16 1-16 697-712 (767)
472 PF08647 BRE1: BRE1 E3 ubiquit 24.3 5.1E+02 0.011 23.0 13.2 95 252-367 1-95 (96)
473 TIGR02132 phaR_Bmeg polyhydrox 24.3 5.3E+02 0.012 25.7 8.9 63 302-364 71-133 (189)
474 PF09789 DUF2353: Uncharacteri 24.2 9.9E+02 0.021 26.4 26.0 170 184-369 12-227 (319)
475 COG5261 IQG1 Protein involved 23.8 4.8E+02 0.01 32.4 10.1 152 67-228 292-497 (1054)
476 KOG4001 Axonemal dynein light 23.7 7.9E+02 0.017 25.0 13.5 86 179-264 157-252 (259)
477 KOG3119 Basic region leucine z 23.6 3.1E+02 0.0068 29.4 8.1 55 319-373 196-250 (269)
478 TIGR03545 conserved hypothetic 23.4 4E+02 0.0086 31.9 9.6 80 295-374 167-248 (555)
479 PF07334 IFP_35_N: Interferon- 23.2 1.5E+02 0.0032 25.3 4.3 27 347-373 2-28 (76)
480 KOG1760 Molecular chaperone Pr 23.2 6.3E+02 0.014 23.7 10.3 77 297-373 24-116 (131)
481 PF15233 SYCE1: Synaptonemal c 23.2 6.5E+02 0.014 23.8 8.9 65 308-372 4-68 (134)
482 PF14282 FlxA: FlxA-like prote 22.9 5.8E+02 0.012 23.2 8.6 61 309-369 18-82 (106)
483 PRK10636 putative ABC transpor 22.9 5.2E+02 0.011 31.4 10.9 77 295-371 548-631 (638)
484 PRK09343 prefoldin subunit bet 22.8 6.2E+02 0.014 23.5 13.9 99 226-339 4-114 (121)
485 PF10234 Cluap1: Clusterin-ass 22.6 9.7E+02 0.021 25.7 15.1 118 254-371 120-237 (267)
486 cd00089 HR1 Protein kinase C-r 22.3 4E+02 0.0087 22.1 6.9 63 306-368 5-72 (72)
487 PF12004 DUF3498: Domain of un 22.2 29 0.00064 40.3 0.0 120 197-319 365-495 (495)
488 PF05278 PEARLI-4: Arabidopsis 22.2 9.9E+02 0.021 25.6 16.5 123 239-376 144-266 (269)
489 TIGR00414 serS seryl-tRNA synt 22.2 5.8E+02 0.013 29.3 10.5 69 303-371 30-102 (418)
490 KOG3990 Uncharacterized conser 22.1 5.4E+02 0.012 27.1 8.9 69 297-365 226-294 (305)
491 PRK11546 zraP zinc resistance 21.9 6E+02 0.013 24.6 8.7 74 302-375 46-119 (143)
492 TIGR01791 CM_archaeal chorisma 21.6 2.5E+02 0.0055 24.0 5.8 41 629-669 37-77 (83)
493 PF12808 Mto2_bdg: Micro-tubul 21.5 3.1E+02 0.0066 21.7 5.4 46 223-268 5-50 (52)
494 PLN02943 aminoacyl-tRNA ligase 21.4 2.3E+02 0.005 36.3 7.7 66 301-366 887-952 (958)
495 PF04977 DivIC: Septum formati 21.4 2.5E+02 0.0054 23.4 5.7 44 332-375 18-61 (80)
496 PF08657 DASH_Spc34: DASH comp 21.3 2.9E+02 0.0062 29.6 7.1 71 295-365 179-259 (259)
497 PF02050 FliJ: Flagellar FliJ 21.2 5.8E+02 0.013 22.6 11.4 75 299-373 1-80 (123)
498 PF04949 Transcrip_act: Transc 21.2 7.6E+02 0.017 23.9 17.9 125 210-362 33-158 (159)
499 TIGR03319 YmdA_YtgF conserved 20.8 1.4E+03 0.031 27.0 26.4 170 160-333 10-186 (514)
500 PF08946 Osmo_CC: Osmosensory 20.5 1.9E+02 0.0041 22.0 3.9 41 299-339 1-41 (46)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.8e-43 Score=414.85 Aligned_cols=702 Identities=20% Similarity=0.247 Sum_probs=439.3
Q ss_pred ccchHHHHHhhccccC-----------CChHHHHHHHHHHhCCC--CeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHH
Q 003183 2 FFLLNNFLTVYGIIVS-----------SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASII 68 (841)
Q Consensus 2 R~~f~eF~~RY~~L~~-----------~d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~I 68 (841)
||+|+||++||++|++ .|.+.+|+.||..+.+| .||+|+||||||+|+++.||++|...++.+++.|
T Consensus 672 R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~i 751 (1463)
T COG5022 672 RWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRI 751 (1463)
T ss_pred hhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999993 25799999999998776 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHH
Q 003183 69 QRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ-TGMRGMA 147 (841)
Q Consensus 69 Q~~~R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQ-s~~Rg~~ 147 (841)
|+.|||++.|++|.+..+.+..+|...+|+..|+.+..--...+++.+|..||....|+.|...-..+..+| ..+|+..
T Consensus 752 q~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~ 831 (1463)
T COG5022 752 QRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKK 831 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877776667899999999999999999999999999999 7777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 148 ARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEEL 227 (841)
Q Consensus 148 aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a~~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el 227 (841)
.+.........++++.+|+.||.+..+++|..+.+.++.+|+.+|...|++++..++.+.+++.++.....+|+.++.++
T Consensus 832 ~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el 911 (1463)
T COG5022 832 LRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIEL 911 (1463)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH
Confidence 77767777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Q 003183 228 TWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEK 307 (841)
Q Consensus 228 ~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~ 307 (841)
...++.......... .+..+.|+.-+...+ ++. ....+.. ....+..+..+..+
T Consensus 912 ~~~~~s~~~~~~~~k---~e~~a~lk~~l~~~d--~~~---~~~~~~~------------------~~~~~~~l~~~~~~ 965 (1463)
T COG5022 912 KKSLSSDLIENLEFK---TELIARLKKLLNNID--LEE---GPSIEYV------------------KLPELNKLHEVESK 965 (1463)
T ss_pred hhccchhhhhhhHHH---HHHHHHHHHHhhccc--ccc---hhHHHHH------------------hhHHHHHHHHHHHH
Confidence 876663211111110 011112211111100 000 0000000 01122333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccCcc
Q 003183 308 LKTLVSSLEKKIDETEKKFEETSKISEERLKQ---ALEAESKIVQLKTAMHRLEEK---VSDMETENQILRQQSLLSTPI 381 (841)
Q Consensus 308 L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~---l~~~e~~~~~L~~e~~~Le~~---l~~le~E~~~l~~~~~~~~~~ 381 (841)
|+....+....+...+....+.....+++..- +.........++.....+++. +..+....+.... .++
T Consensus 966 l~~~~~~~~~~~k~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s-----~~~ 1040 (1463)
T COG5022 966 LKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISS-----EST 1040 (1463)
T ss_pred HHHHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhcc-----chh
Confidence 33333333222222222222222211111100 000000001111111111111 2222222221100 000
Q ss_pred cccccccCCccccccCC-CCcccccccCCCCCCCCCccccCCCcchhhhhchhhhhhccHHHHHHHhHh-cCCCc-CCCc
Q 003183 382 KKMSEHISAPATQSLEN-GHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAK-NLGYC-NGKP 458 (841)
Q Consensus 382 ~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~~~~ll~~l~~-~~~~~-~~~p 458 (841)
. ...+. +. ....+ ..+...+...... .....+ +. ...-....+..+....+++.+.. |+.+. ...+
T Consensus 1041 ~--~~~~~-~~-~~~~~~~~~~~~~l~~~~~--~l~~~r--~~---~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~ 1109 (1463)
T COG5022 1041 E--LSILK-PL-QKLKGLLLLENNQLQARYK--ALKLRR--EN---SLLDDKQLYQLESTENLLKTINVKDLEVTNRNLV 1109 (1463)
T ss_pred h--hhccC-cc-cchhhhhhHHHHHhhhhHh--hhhhcC--cc---cchhHHHHHHHHhhhhhhhhhccchhhhhccccc
Confidence 0 00000 00 00000 0000000000000 000000 00 00000112334445555554433 22221 1122
Q ss_pred chHHH-HHHHHhhccc-chhhhhhHHHHHHHHHHHHHhcc---CCCcchhHHHhhHHHHHHHHHHhhhhcCCCCCCCCCC
Q 003183 459 VAAFT-IYKCLLHWKS-FEAERTSVFDRLIQMIGSAIENE---DDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKK 533 (841)
Q Consensus 459 ~pA~i-l~~c~~~~~~-~~~e~~~ll~~ii~~I~~~i~~~---~d~~~l~fWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~ 533 (841)
.||.. .+...-+|++ ...+...++...+..+..+.... +-...+.||.+|...+++.- ......+.+.
T Consensus 1110 ~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~ 1182 (1463)
T COG5022 1110 KPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPP-------PFAALSEKRL 1182 (1463)
T ss_pred chhhHHHHHHHHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCC-------chhhcchhhh
Confidence 24544 4444457765 32333446666566665554432 33445789999998876310 0000000000
Q ss_pred CCCccchhhhhhccCCCCcchhhhhhhHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 003183 534 PPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPR 613 (841)
Q Consensus 534 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~ 613 (841)
.+..+- .+.+. . + ...+.. .+..+..+..++|+.|.... ++++.+...+-...
T Consensus 1183 ------~~~~~~-d~~~~----~----s-~s~v~~---------l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~ 1235 (1463)
T COG5022 1183 ------YQSALY-DEKSK----L----S-SSEVND---------LKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTE 1235 (1463)
T ss_pred ------hHhhhh-ccccc----c----c-HHHHHH---------HHHHHHHHHHhccccchhhh--hhhhhhhhccchhh
Confidence 000000 00110 0 0 111111 33556667778888886654 33333321110000
Q ss_pred CCC--CCccCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCcCCcchhh
Q 003183 614 TSK--GSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGE 691 (841)
Q Consensus 614 ~~~--~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r~~~cs~s~G~ 691 (841)
.+. ++... +......+...+.++++.+++.+.++++.+.+.+.+....++++..++|+.+||.|..+....+|+.|.
T Consensus 1236 ~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~ 1314 (1463)
T COG5022 1236 YSTSLKGFNN-LNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSAT 1314 (1463)
T ss_pred hccccccccc-hhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcc
Confidence 011 11100 011122445678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHhhcccccccCcHHHhHHHHHHHHHHhccccccccHHHHHhccCCCCCHHHHHHHHhcCCCCCCCCCC
Q 003183 692 YVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRS 771 (841)
Q Consensus 692 qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y~~d~~e~~~ 771 (841)
++.+|.+.+.+||+.+|. ..+..+|++++||++.+++.+++..+.+++ .+.|.+|+|.|+.+|+..|.|.++++ +
T Consensus 1315 ~~~~n~~~~~~w~~~~~i---~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e~-~ 1389 (1463)
T COG5022 1315 EVNYNSEELDDWCREFEI---SDVDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKEN-N 1389 (1463)
T ss_pred cccccchhhhHHHHhhcc---cchHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhcccC-C
Confidence 999999999999999983 455689999999999999996555555556 49999999999999999999999985 9
Q ss_pred CCHHHHHHHHhhhh
Q 003183 772 VSPNVISSMRILMT 785 (841)
Q Consensus 772 v~~~~i~~v~~~~~ 785 (841)
+|.++..+|.+...
T Consensus 1390 l~ke~~~~~~a~~~ 1403 (1463)
T COG5022 1390 LPKEILKKIEALLI 1403 (1463)
T ss_pred ChHHHHHHHhhhhh
Confidence 99999966655544
No 2
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.97 E-value=4.6e-31 Score=296.63 Aligned_cols=307 Identities=19% Similarity=0.333 Sum_probs=233.0
Q ss_pred hhhhccHHHHHHHhHh-cCCCcCCCcchHHHHHHHHhhcc--cchhhh----hhHHHHHHHHHHHHHhccC-CCcchhHH
Q 003183 434 EHQHENVDALINCVAK-NLGYCNGKPVAAFTIYKCLLHWK--SFEAER----TSVFDRLIQMIGSAIENED-DNDHMAYW 505 (841)
Q Consensus 434 e~~~e~~~~ll~~l~~-~~~~~~~~p~pA~il~~c~~~~~--~~~~e~----~~ll~~ii~~I~~~i~~~~-d~~~l~fW 505 (841)
++..-.++..+..++. +.+.+.++.+|-|- |..-.|++ .+..++ ..||.++++.+..+++++. +...|+||
T Consensus 544 ~~~d~~~~sfL~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFW 622 (1629)
T KOG1892|consen 544 EFRDSSEDSFLSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFW 622 (1629)
T ss_pred ecccCcHHHHHHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHh
Confidence 4455567777777765 44445555555552 22233443 355554 6899999999999999984 55599999
Q ss_pred HhhHHHHHHHHHHhhhhcCCCCCCCCCCCCCccchhhhhhccCCCCcchhhhhhhHHHHHHHHhhhchhhHHHHHHHHHH
Q 003183 506 LSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAY 585 (841)
Q Consensus 506 LsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~q~L~~~ 585 (841)
|+|.+++|||++++-..+ .+. +.-+..|...
T Consensus 623 mANaSEflhfik~Dr~ls--------------------------------~~~-----------------~~aq~vla~~ 653 (1629)
T KOG1892|consen 623 MANASEFLHFIKQDRDLS--------------------------------RIT-----------------LDAQDVLAHL 653 (1629)
T ss_pred hcCHHHHHHHHHhccchh--------------------------------hee-----------------hhHHHHHHHH
Confidence 999999999997752211 010 1123455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003183 586 VEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQ 665 (841)
Q Consensus 586 ~~~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~q 665 (841)
|+.+|..|+.+++.+|++-+...+... ....+.++++|+.|+..+.+|+.|+|+..|+.|+|+|
T Consensus 654 vq~aFr~LV~clqsel~~~~~afLden----------------~~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsq 717 (1629)
T KOG1892|consen 654 VQMAFRYLVHCLQSELNNYMPAFLDEN----------------SLQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQ 717 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc----------------cccCccccchHHHhHHHHHHHHHhccchHHHHHHHHH
Confidence 888899999988888877775533210 2235678899999999999999999999999999999
Q ss_pred HHHhHhHHHHHhhhcc--CCcCCcchhhHHhhchHHHHHHHhhcccccccCcHHHhHHHHHHHHHHhccccccccHHHHH
Q 003183 666 TFSYINVQLFNSLLLR--RECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIT 743 (841)
Q Consensus 666 lf~~in~~~fN~Ll~r--~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~ 743 (841)
||+|||+++||+|+.. ..+|+-.+|--|++.|..||.||+..|++.+++ |||..|+||++||+++| ...++..-+
T Consensus 718 LfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAd--CHL~ri~Qaa~lL~~~K-~a~ddi~~l 794 (1629)
T KOG1892|consen 718 LFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAAD--CHLSRIVQAATLLTMDK-YAPDDIPNL 794 (1629)
T ss_pred HHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhh--ccHHHHHHHHHHHhccc-cChhhHHhh
Confidence 9999999999999998 789999999999999999999999999988876 99999999999999994 444444434
Q ss_pred hccCCCCCHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHhhhhcCCCC---CCCC--cccccCCCcccccccc
Q 003183 744 NDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSND---ATSN--SFLLDDNSSIPFSVDD 810 (841)
Q Consensus 744 ~~~C~~Ls~~Qi~kil~~Y~~d~~e~~~v~~~~i~~v~~~~~~~~~~---~~~~--~ll~D~~~~~Pf~~~~ 810 (841)
...|+.||+.|+.+||..|++++.|+ ++|.+++..+..+..+..+. ++.. +|--+.+.-+||..++
T Consensus 795 ~stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 795 NSTCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred ccchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceeecC
Confidence 68999999999999999999999996 99999999987665543221 1111 3334555557775554
No 3
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.96 E-value=9.4e-30 Score=232.40 Aligned_cols=105 Identities=36% Similarity=0.647 Sum_probs=87.2
Q ss_pred HHHHHHHHhHhHHHHHhhhccCCcCCcchhhHHhhchHHHHHHHhhcccccccCcHHHhHHHHHHHHHHhccccccccHH
Q 003183 661 KIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYD 740 (841)
Q Consensus 661 q~f~qlf~~in~~~fN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~ 740 (841)
|+|+|+|+|||+.+||+||.|+++|+|++|+|||+||+.||+||+++|+..+ +.++|.|++||++|||++|++..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999996333 68999999999999999744444444
Q ss_pred HHHhccCCCCCHHHHHHHHhcCCCCCCC
Q 003183 741 EITNDLCPILSVQQLYRICTLYWDDNYN 768 (841)
Q Consensus 741 ~i~~~~C~~Ls~~Qi~kil~~Y~~d~~e 768 (841)
.+ .++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 45 5999999999999999999999986
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=99.93 E-value=1.5e-24 Score=253.33 Aligned_cols=147 Identities=48% Similarity=0.812 Sum_probs=138.8
Q ss_pred CccchHHHHHhhccccC----CChHHHHHHHHHHhCCCCeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIVS----SDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYL 76 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~----~d~~~~~~~iL~~~~~~~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~~R~~~ 76 (841)
.||+|.||+.||++|++ .|+..+|+.||+++++++||+|+||||||+|+++.||.+|.+++.++++.||+.+|+|+
T Consensus 608 ~r~~~~Ef~~r~~~L~~~~~~~~~~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~ 687 (862)
T KOG0160|consen 608 TRWTFIEFVNRYGILMPNDSASDDLSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYL 687 (862)
T ss_pred ccccHHHHHHHHhhcCcchhcccchHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 38999999999999995 46699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 003183 77 SRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARN 150 (841)
Q Consensus 77 ~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~ 150 (841)
.|++|..+|.+++.||+++||+++|+ ..+ +..||+.||+.+|+|..|++|...+.+++.+|+.+||+.+|.
T Consensus 688 ~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 688 ARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998 334 678999999999999999999999999999999999998886
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.86 E-value=4.9e-18 Score=213.29 Aligned_cols=338 Identities=24% Similarity=0.293 Sum_probs=180.6
Q ss_pred ccchHHHHHhhcccc-------CCChHHHHHHHHHHhCC--CCeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHHH
Q 003183 2 FFLLNNFLTVYGIIV-------SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKV 72 (841)
Q Consensus 2 R~~f~eF~~RY~~L~-------~~d~~~~~~~iL~~~~~--~~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~~ 72 (841)
|++|.||..||.++. ..|.+.+|..|+..+.+ +-|++|.||||||+|+++.||..|.+++...++.+|+.+
T Consensus 704 r~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~ 783 (1930)
T KOG0161|consen 704 RMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAI 783 (1930)
T ss_pred ccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999555 25779999999999854 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---hhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 003183 73 RSYLSRKNYIMLR---RSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAAR 149 (841)
Q Consensus 73 R~~~~Rk~~~~~r---~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR 149 (841)
|||++|+.|.+.. .|+.+||+.+|.|+..+.+...+ -|.+++ ..|++.-+....+
T Consensus 784 Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~-------------------Lf~kvk---PLL~~~~~ee~~~ 841 (1930)
T KOG0161|consen 784 RGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWR-------------------LFTKVK---PLLKVTKTEEEMR 841 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH-------------------HHHHHH---HHHHhhhhHHHHH
Confidence 9999888886553 56666776666665544433322 111111 1122211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 150 NELRFRRQTRASILIQSHCRKYLARLHY----MKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVE 225 (841)
Q Consensus 150 ~~~~~~~~~~aA~~IQ~~~R~~~~r~~~----~~~~~a~~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~ 225 (841)
..-.....-.- .+ -+.-..|..+ .++......+|.- ..+++... .........+...+..++..+.
T Consensus 842 ~~~~e~~~l~~--~l---~~~e~~~~ele~~~~~~~~e~~~l~~~---l~~e~~~~--~~aee~~~~~~~~k~~le~~l~ 911 (1930)
T KOG0161|consen 842 AKEEEIQKLKE--EL---QKSESKRKELEEKLVKLLEEKNDLQEQ---LQAEKENL--AEAEELLERLRAEKQELEKELK 911 (1930)
T ss_pred HhHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 11000000000 00 0000000000 0010000111100 00111100 0011122334444555555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHh
Q 003183 226 ELTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLMKEIEVA--------------------KKEAE 282 (841)
Q Consensus 226 el~~~l~~e~~~~~~le~~~~---~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~--------------------~~~~e 282 (841)
++..+++.++.....++..+. +++..+.+.+++++..+.++..+........ ++..+
T Consensus 912 ~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lE 991 (1930)
T KOG0161|consen 912 ELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELE 991 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554443333332222 2233333333333333222221111100000 11111
Q ss_pred hc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 283 KV-PVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 361 (841)
Q Consensus 283 e~-~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l 361 (841)
+. ..+.+....+.++...+.+.+.++++++++++..++..++.+.++++...++..++...++.+..++...++|..++
T Consensus 992 e~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l 1071 (1930)
T KOG0161|consen 992 ERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQL 1071 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11 11111112256788889999999999999999999988888888888888888777666666665555555555555
Q ss_pred HHHHHHHHHH
Q 003183 362 SDMETENQIL 371 (841)
Q Consensus 362 ~~le~E~~~l 371 (841)
.+.+.|...+
T Consensus 1072 ~kke~El~~l 1081 (1930)
T KOG0161|consen 1072 KKKESELSQL 1081 (1930)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 6
>PTZ00014 myosin-A; Provisional
Probab=99.67 E-value=1.5e-16 Score=190.95 Aligned_cols=103 Identities=25% Similarity=0.344 Sum_probs=94.0
Q ss_pred CccchHHHHHhhccccC-------CChHHHHHHHHHHhCC--CCeeeeeeEEEcccccHHHHHHHHHHHHh---hhHHHH
Q 003183 1 MFFLLNNFLTVYGIIVS-------SDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLG---RSASII 68 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-------~d~~~~~~~iL~~~~~--~~yq~G~TKvF~rag~~a~Le~~R~~~l~---~aa~~I 68 (841)
+|++|.||+.||++|++ .|.+++|+.||..+++ +.|++|+||||||+|+++.||.+|.+++. .+++.|
T Consensus 704 ~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~i 783 (821)
T PTZ00014 704 YRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVL 783 (821)
T ss_pred ccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999982 4789999999999866 58999999999999999999999888764 688999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhh
Q 003183 69 QRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTV 103 (841)
Q Consensus 69 Q~~~R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~ 103 (841)
|++||||++|++|.+.+.+++.||++||||++++.
T Consensus 784 q~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 784 EALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998764
No 7
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=99.65 E-value=1.7e-15 Score=168.78 Aligned_cols=120 Identities=27% Similarity=0.406 Sum_probs=108.7
Q ss_pred ccchHHHHHhhcccc--------CCChHHHHHHHHHHhCC-CCeeeeeeEEEcccccH-HHHHHHHHHHHhhhHHHHHHH
Q 003183 2 FFLLNNFLTVYGIIV--------SSDEVTACKRLLEKVGL-EGYQIGKTKVFLRAGQM-ADLDARRTEVLGRSASIIQRK 71 (841)
Q Consensus 2 R~~f~eF~~RY~~L~--------~~d~~~~~~~iL~~~~~-~~yq~G~TKvF~rag~~-a~Le~~R~~~l~~aa~~IQ~~ 71 (841)
|.+|+-|+.||++++ ..++++.|..+++..+. +++.+|+||||+|.+.. -.||..|...+...++.||+.
T Consensus 626 Rq~Y~~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~ 705 (1001)
T KOG0164|consen 626 RQPYERFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKA 705 (1001)
T ss_pred ccchHHHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999 24679999999999987 68999999999999986 799999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003183 72 VRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKD 131 (841)
Q Consensus 72 ~R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~ 131 (841)
||||++|.+|++++.+++.|+ +||.+..+ .++-.||+.+|++..++.|.+
T Consensus 706 ~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 706 WRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCC
Confidence 999999999999999999999 88855433 567789999999999998876
No 8
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=99.47 E-value=1.7e-10 Score=129.67 Aligned_cols=122 Identities=25% Similarity=0.404 Sum_probs=88.4
Q ss_pred ccchHHHHHhhcccc-----CCChHHHHHHHHHHhCCC--CeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003183 2 FFLLNNFLTVYGIIV-----SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRS 74 (841)
Q Consensus 2 R~~f~eF~~RY~~L~-----~~d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~~R~ 74 (841)
|-+|.|.+.-|+-.+ ..|++-+|+.++..+|+| +|+||.||||||+|..+.+++.-..--...+.+|+ .+-.
T Consensus 707 R~~F~dLYamYkk~lPpkLarLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~-kVn~ 785 (1259)
T KOG0163|consen 707 RTSFADLYAMYKKVLPPKLARLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVA-KVNK 785 (1259)
T ss_pred cccHHHHHHHHHhhCCHhhhcCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHH-HHHH
Confidence 778999999998777 469999999999999886 89999999999999999999877554444444454 4677
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003183 75 YLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDM 132 (841)
Q Consensus 75 ~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~~ 132 (841)
|+.+.+|.+...++..+=.. +.+ -.-+..+++++|+..|||++|+++...
T Consensus 786 WLv~sRWkk~q~~a~sVIKL------kNk--I~yRae~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 786 WLVRSRWKKSQYGALSVIKL------KNK--IIYRAECVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred HHHHhHHHHhhhhhhheeeh------hhH--HHHHHHHHHHHHHHHHHHHHHhhhchH
Confidence 99999887765433222110 000 001235677788888888888776553
No 9
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=99.14 E-value=1.1e-10 Score=131.03 Aligned_cols=90 Identities=28% Similarity=0.458 Sum_probs=81.3
Q ss_pred ccchHHHHHhhcccc-------CCChHHHHHHHHHHhCC--CCeeeeeeEEEcccccH-HHHHHHHHHHHhhhHHHHHHH
Q 003183 2 FFLLNNFLTVYGIIV-------SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQM-ADLDARRTEVLGRSASIIQRK 71 (841)
Q Consensus 2 R~~f~eF~~RY~~L~-------~~d~~~~~~~iL~~~~~--~~yq~G~TKvF~rag~~-a~Le~~R~~~l~~aa~~IQ~~ 71 (841)
|..|+-|++||.+|. .+|.+.+|+.||..... +.||+|.||||+++.-- -.||..|+.+...-|..||+.
T Consensus 626 Rr~F~kF~qRyailsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkA 705 (1106)
T KOG0162|consen 626 RRAFDKFAQRYAILSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKA 705 (1106)
T ss_pred HHHHHHHHHHheecCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 668999999999999 36999999999999754 69999999999999875 788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 003183 72 VRSYLSRKNYIMLRRSAIHI 91 (841)
Q Consensus 72 ~R~~~~Rk~~~~~r~aai~I 91 (841)
||.|++|++|.++|.-+..|
T Consensus 706 WRrfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 706 WRRFVARRKYEKMREEATKL 725 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999766544
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.96 E-value=1.2e-06 Score=112.39 Aligned_cols=52 Identities=31% Similarity=0.337 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHH
Q 003183 76 LSRKNYIMLRRSAIHIQAACRGQLARTVYESMRR-EASCLRIQRDLRMYLAKK 127 (841)
Q Consensus 76 ~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~-~~Aa~~IQ~~~R~~~~r~ 127 (841)
+.-.+-..+..-++.+|+.+|||++|+.+.++.. ..|+.+||+++|.|...+
T Consensus 764 LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 764 LEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444445666777888888888777666553 466777777777776555
No 11
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=98.80 E-value=4e-09 Score=125.64 Aligned_cols=60 Identities=65% Similarity=1.042 Sum_probs=56.1
Q ss_pred CccchHHHHHhhcccc------CCChHHHHHHHHHHhCCCCeeeeeeEEEcccccHHHHHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIV------SSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEV 60 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~------~~d~~~~~~~iL~~~~~~~yq~G~TKvF~rag~~a~Le~~R~~~ 60 (841)
+|++|.+|+.||++|+ ..|.+..|+.||..+++++||+|+||||||+|+++.||+.|++.
T Consensus 608 ~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 608 TRRTFDEFLDRFGILAPEVLKGSSDDKAACKKILDKMGLKGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred ccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 6999999999999999 24789999999999999999999999999999999999999875
No 12
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.59 E-value=2.9e-07 Score=109.46 Aligned_cols=85 Identities=39% Similarity=0.522 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 111 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCA 190 (841)
Q Consensus 111 ~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a~~~iQ~~ 190 (841)
.+++.||+.+|+|..|+.|..+|.+++.||+.+||+++|+ ... +..||+.||+.||++..|+.|+..+.+++.+|+.
T Consensus 674 ~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~ 750 (862)
T KOG0160|consen 674 AAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSG 750 (862)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999 333 7889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 003183 191 WRGKVARR 198 (841)
Q Consensus 191 ~R~~~aRr 198 (841)
+|++.+|.
T Consensus 751 ~r~~~~r~ 758 (862)
T KOG0160|consen 751 VRAMLARN 758 (862)
T ss_pred HHHHHhcc
Confidence 99999998
No 13
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.39 E-value=7.5e-07 Score=106.09 Aligned_cols=127 Identities=28% Similarity=0.362 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 003183 62 GRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQT 141 (841)
Q Consensus 62 ~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs 141 (841)
..++..||.++|+|..|+.|..++.-++.||+.+||+..|+.|..+- ++.... ++-| .++..+|.
T Consensus 810 ~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~--wSv~~l---------ek~~----lrwR~k~~ 874 (975)
T KOG0520|consen 810 PAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKIT--WSVGVL---------EKLI----LRWRRKGK 874 (975)
T ss_pred hhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheec--hhhhHH---------HHHH----HHHHHhhh
Confidence 45778888888888888888888888888888888888887777654 111111 1111 12334566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 142 GMRGMAARNELRFRRQTRASILIQSHCRKYLAR--LHYMKLKKAAITTQCAWRGKVARRELRKLKM 205 (841)
Q Consensus 142 ~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r--~~~~~~~~a~~~iQ~~~R~~~aRr~l~~lk~ 205 (841)
.+||+..|..... ...||+.||...|-|+.- ..|.++-++++.||+.+|...++.+++++..
T Consensus 875 g~Rgfk~~~~~e~--~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 875 GFRGFKGRALFEE--QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred hhcccccccchhc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666666655432 223677777777777765 5677777888888888888888877776654
No 14
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.29 E-value=0.00048 Score=85.24 Aligned_cols=89 Identities=22% Similarity=0.175 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 003183 110 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQ- 188 (841)
Q Consensus 110 ~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a~~~iQ- 188 (841)
...++.||+.|||+..|++|.........+|...+|+..|+.........+++.+|..|+....|..|+.....+..+|
T Consensus 745 ~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~ 824 (1463)
T COG5022 745 DNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQK 824 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999887777777889999999999999999999988888888
Q ss_pred HHHHHHHHHH
Q 003183 189 CAWRGKVARR 198 (841)
Q Consensus 189 ~~~R~~~aRr 198 (841)
..+|....+.
T Consensus 825 ~i~~~~~~~~ 834 (1463)
T COG5022 825 TIKREKKLRE 834 (1463)
T ss_pred HHHHHHHHhH
Confidence 5566655554
No 15
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=98.22 E-value=1.1e-06 Score=105.34 Aligned_cols=58 Identities=29% Similarity=0.513 Sum_probs=51.0
Q ss_pred CccchHHHHHhhccccCC---ChHHHHHHHHHHhCCC--CeeeeeeEEEcccccHHHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIVSS---DEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRT 58 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~~---d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag~~a~Le~~R~ 58 (841)
+|.+|.+|+.||++|++. +.++.|+.||..++++ +||+|+||||||+++.+.||+.-.
T Consensus 627 ~R~~~~~F~~rY~~L~~~~~~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 627 VRYTYQDFTQQYRILLPKGAQSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred ccccHHHHHHHHHHhCcccccchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 599999999999999943 4577899999998764 899999999999999999997654
No 16
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.17 E-value=4.3e-06 Score=99.77 Aligned_cols=135 Identities=19% Similarity=0.135 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHhhhh---hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhchhH
Q 003183 63 RSASIIQRKVRSYLSRKNYIMLRRSAIHIQ---AACRGQLA---RTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSA 136 (841)
Q Consensus 63 ~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQ---~~~Rg~la---R~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~~r~aa 136 (841)
.+|..||..+|...-++.-.+....+...| ..+=+..+ -..+.......||..||..+|+|..|+.|..++..+
T Consensus 757 ~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~~~~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~ 836 (975)
T KOG0520|consen 757 QAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSMCDDRSDPAAASRIQKKFRGYKQRKEFLSTRQPI 836 (975)
T ss_pred HHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhcCccccchhHHHHhhhhhhhHHhhhhhcccCCcc
Confidence 356678888888766544433322222211 11111111 112344445689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 137 VCIQTGMRGMAARNELRF--------RRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVAR 197 (841)
Q Consensus 137 i~iQs~~Rg~~aR~~~~~--------~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a~~~iQ~~~R~~~aR 197 (841)
+.||+.+||+..|+.|+. .+...++..+|+.+||++.+..+...-.++..||.+.|.+..-
T Consensus 837 v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~ 905 (975)
T KOG0520|consen 837 VKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQL 905 (975)
T ss_pred ccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHH
Confidence 999999999999999954 2334577889999999999999988888889999988887654
No 17
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.029 Score=65.26 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=10.1
Q ss_pred CCcCCcchhhHHhhchHHHHHH
Q 003183 682 RECCTFSNGEYVKAGLAELELW 703 (841)
Q Consensus 682 ~~~cs~s~G~qIr~nls~Le~W 703 (841)
++-.-|--|.-+.-+=-+.--|
T Consensus 1009 Kn~sGWWeGELqarGkkrq~GW 1030 (1118)
T KOG1029|consen 1009 KNASGWWEGELQARGKKRQIGW 1030 (1118)
T ss_pred cCCCccchhhHhhcCCcccccc
Confidence 4445555555444444333333
No 18
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=97.30 E-value=0.0071 Score=74.88 Aligned_cols=119 Identities=24% Similarity=0.271 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhH---HHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHHHHHH--HHHHHH
Q 003183 87 SAIHIQAACRGQLARTVYESMRREAS---CLRIQRDLRMYLAKKAYKDM-------CFSAVCIQTGMRGMAA--RNELRF 154 (841)
Q Consensus 87 aai~IQ~~~Rg~laR~~~~~~r~~~A---a~~IQ~~~R~~~~r~~~~~~-------r~aai~iQs~~Rg~~a--R~~~~~ 154 (841)
..+..|+.+||+..|.....+-...+ -.++|+..||+..|..+... -..+.-||+.|||++. -+....
T Consensus 509 ~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~ 588 (1401)
T KOG2128|consen 509 SLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYL 588 (1401)
T ss_pred HHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHH
Confidence 33446666666665554333321111 13347777777777665432 2356677888888774 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 155 RRQTRASILIQSHCRKYLARLHYMKLK-------KAAITTQCAWRGKVARRELRKLKM 205 (841)
Q Consensus 155 ~~~~~aA~~IQ~~~R~~~~r~~~~~~~-------~a~~~iQ~~~R~~~aRr~l~~lk~ 205 (841)
.....-++.+|++.||+..|+.|.+.. .+++.||+.+|.+.+|..++.+..
T Consensus 589 ~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 589 DSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 334456677888888888877665543 457788888888888888877654
No 19
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.24 E-value=0.67 Score=55.41 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=22.0
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCHHHH
Q 003183 631 ASSHWQSIIDSLNTLLSTLKQNFVPPVLV 659 (841)
Q Consensus 631 ~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 659 (841)
|..++...+..+|+++..+....++++..
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 35578889999999999988776665543
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.17 E-value=0.18 Score=60.89 Aligned_cols=162 Identities=23% Similarity=0.246 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Q 003183 209 ETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPV-- 286 (841)
Q Consensus 209 ~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~-- 286 (841)
++..++...+.|++++..|....+.++... ..|+.++.++..+-...+++|.+|+...+...+....
T Consensus 461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l-----------~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~ 529 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNLVQARQQDKQSL-----------QQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARAL 529 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcc
Confidence 344555666666666666665555443333 3333344444444444444444333333322221100
Q ss_pred ------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHH---
Q 003183 287 ------VQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK-------ISEERLKQALEAESKIVQL--- 350 (841)
Q Consensus 287 ------~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~-------~~~~~~~~l~~~e~~~~~L--- 350 (841)
..|-...-..+..+|+.|..+|+.++...++.+..++.+..++.. +.+.+...|..++++...|
T Consensus 530 ~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~s 609 (697)
T PF09726_consen 530 AQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENS 609 (697)
T ss_pred ccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 001011123356677777777777777777777777766654432 2223333333333333222
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHh---hcccCcc
Q 003183 351 ------------------KTAMHRLEEKVSDMETENQILRQQ---SLLSTPI 381 (841)
Q Consensus 351 ------------------~~e~~~Le~~l~~le~E~~~l~~~---~~~~~~~ 381 (841)
+.+++-++..+.+.+.|+..|+++ .+...|.
T Consensus 610 LsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 610 LSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 345566666677777888888774 3444453
No 21
>PRK11637 AmiB activator; Provisional
Probab=97.16 E-value=0.12 Score=59.52 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 249 NAKLQSALQEMQLQFKESK 267 (841)
Q Consensus 249 ~~~L~~~l~~l~~~l~~~~ 267 (841)
++.++.++.+++.+++...
T Consensus 105 i~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 22
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.13 E-value=0.00058 Score=42.95 Aligned_cols=19 Identities=53% Similarity=0.775 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 003183 63 RSASIIQRKVRSYLSRKNY 81 (841)
Q Consensus 63 ~aa~~IQ~~~R~~~~Rk~~ 81 (841)
+||++||+.||||++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4666777777777776665
No 23
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.00 E-value=0.001 Score=41.86 Aligned_cols=19 Identities=58% Similarity=0.833 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 159 RASILIQSHCRKYLARLHY 177 (841)
Q Consensus 159 ~aA~~IQ~~~R~~~~r~~~ 177 (841)
+||+.||++||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4566666666666666655
No 24
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.98 E-value=0.0077 Score=69.42 Aligned_cols=85 Identities=20% Similarity=0.132 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 003183 109 REASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMK--------- 179 (841)
Q Consensus 109 ~~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~--------- 179 (841)
...-++.||+.||||.+|.+|++++.+++.|+ +||.+.. ...+..||+.+||+..++.|.+
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~---------ks~v~el~~~~rg~k~~r~ygk~~~WP~pP~ 764 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL---------KSYVQELQRRFRGAKQMRDYGKSIRWPAPPL 764 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---------HHHHHHHHHHHHhhhhccccCCCCCCCCCch
Confidence 34678899999999999999999999999888 7774433 3455678899999999988864
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 180 -LKKAAITTQCAWRGKVARRELRKL 203 (841)
Q Consensus 180 -~~~a~~~iQ~~~R~~~aRr~l~~l 203 (841)
++.+...+|..+-+|.+++-++.+
T Consensus 765 ~Lr~~~~~L~~lf~rwra~~~~~~i 789 (1001)
T KOG0164|consen 765 VLREFEELLRELFIRWRAWQILKSI 789 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566777777777766665544
No 25
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.85 E-value=0.97 Score=53.04 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 116 IQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAIT 186 (841)
Q Consensus 116 IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a~~~ 186 (841)
|=+.+..|+++.+|.+...++..+-.. +. +-.-+..+.+++|++.|||++|+++++......+
T Consensus 779 lv~kVn~WLv~sRWkk~q~~a~sVIKL------kN--kI~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K 841 (1259)
T KOG0163|consen 779 LVAKVNKWLVRSRWKKSQYGALSVIKL------KN--KIIYRAECVLKAQRIARGYLARKRHRPRIAGIRK 841 (1259)
T ss_pred HHHHHHHHHHHhHHHHhhhhhhheeeh------hh--HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Confidence 445677888888887765443222110 00 1122345668888888999888888776554433
No 26
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.71 E-value=3.6 Score=53.60 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=4.0
Q ss_pred hhHHHhhH
Q 003183 502 MAYWLSNT 509 (841)
Q Consensus 502 l~fWLsN~ 509 (841)
+.|||+||
T Consensus 616 ~~~~lg~~ 623 (1164)
T TIGR02169 616 FKYVFGDT 623 (1164)
T ss_pred HHHHCCCe
Confidence 44555554
No 27
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.66 E-value=0.034 Score=69.13 Aligned_cols=116 Identities=26% Similarity=0.252 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHhhhhhhhhhhhh-----hhhHHHHHHHHHHHHHH----HHHHHhh
Q 003183 67 IIQRKVRSYLSRKNYIML-----RRSAIHIQAACRGQLARTVYESMR-----REASCLRIQRDLRMYLA----KKAYKDM 132 (841)
Q Consensus 67 ~IQ~~~R~~~~Rk~~~~~-----r~aai~IQ~~~Rg~laR~~~~~~r-----~~~Aa~~IQ~~~R~~~~----r~~~~~~ 132 (841)
..|.-+||...|..--.+ ..-...+|+..||+..|..++..- ......-||..|||++. ...+...
T Consensus 512 s~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~ 591 (1401)
T KOG2128|consen 512 SLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSA 591 (1401)
T ss_pred hHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHh
Confidence 367777777766643222 122344599999999988766543 34678899999999984 2223345
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 133 CFSAVCIQTGMRGMAARNELRFR-----RQTRASILIQSHCRKYLARLHYMKLKK 182 (841)
Q Consensus 133 r~aai~iQs~~Rg~~aR~~~~~~-----~~~~aA~~IQ~~~R~~~~r~~~~~~~~ 182 (841)
..-++.+|++.||+++|+.+... ....+++.||++.|++..|..|+.+..
T Consensus 592 ~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 592 KKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 67799999999999999988543 345678999999999999999998864
No 28
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.62 E-value=0.59 Score=56.60 Aligned_cols=71 Identities=11% Similarity=0.240 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 303 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 303 ~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.+.+.|-..+..++++...+|..+....+.+.++-..|-++..+++.++..+..-+.+|..|+..+..+..
T Consensus 587 ~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 587 KDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666677777777777766666666777777777777777777777777777777776666644
No 29
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.61 E-value=0.54 Score=45.35 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 213 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKL 270 (841)
Q Consensus 213 l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l 270 (841)
.......++.++.++..+.. ....++..|+..+..++.+++.....+
T Consensus 12 a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666665555 455666677777777666666655543
No 30
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.61 E-value=4.3 Score=53.49 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 209 ETGALQAAKNKLEKQVEELTWRLQL 233 (841)
Q Consensus 209 ~~~~l~~~~~~le~kv~el~~~l~~ 233 (841)
....+......++.++..|+...+.
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEk 332 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQA 332 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555444443
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.58 E-value=3.3 Score=51.47 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHHhHHHHHHHHHHhccccccccHHHHHhccC---CCCCHHHHHHHHhcCCCCC
Q 003183 716 WDELKHIRQAVGFLVIHQKYRISYDEITNDLC---PILSVQQLYRICTLYWDDN 766 (841)
Q Consensus 716 ~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~C---~~Ls~~Qi~kil~~Y~~d~ 766 (841)
.+.|.|..+-+.|-+.| +..+|..|- .+. -+||+.=|+=-|.+|.|..
T Consensus 1169 VDslDPFseGV~FSVrP--pKKSWK~I~-NLSGGEKTLSSLALVFALH~YkPTP 1219 (1293)
T KOG0996|consen 1169 VDSLDPFSEGVMFSVRP--PKKSWKNIS-NLSGGEKTLSSLALVFALHHYKPTP 1219 (1293)
T ss_pred eccCCCcccCceEEeeC--chhhhhhcc-cCCcchhHHHHHHHHHHHHccCCCC
Confidence 57889999999999988 778898874 333 4799999999999999843
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.55 E-value=0.89 Score=54.42 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=10.0
Q ss_pred hCCCCHHHHHHHHHHHHHhHh
Q 003183 651 QNFVPPVLVQKIFTQTFSYIN 671 (841)
Q Consensus 651 ~~~v~~~l~~q~f~qlf~~in 671 (841)
-|++|...-.+.|.++.--+|
T Consensus 889 iye~d~~~p~~~lr~sleq~n 909 (1243)
T KOG0971|consen 889 IYETDSSSPYECLRQSLEQLN 909 (1243)
T ss_pred hccCCccchHHHHHHHHHHHH
Confidence 344444444555555544443
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.49 E-value=0.64 Score=53.54 Aligned_cols=26 Identities=8% Similarity=0.189 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 247 QENAKLQSALQEMQLQFKESKEKLMK 272 (841)
Q Consensus 247 ~e~~~L~~~l~~l~~~l~~~~~~l~~ 272 (841)
.+++.++.++..++.++.+.+..+..
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544443
No 34
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.21 E-value=2.7 Score=51.36 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=25.1
Q ss_pred CcCCcchhhHHhhchHHHHHHHhhcccccccCcHHHhHHHHHHHHHHhccccc
Q 003183 683 ECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKY 735 (841)
Q Consensus 683 ~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~ 735 (841)
+-=.+-.|+.||-.+.-+ |=.+-+ +..|+. -.|--|.=..-+|..+.-+
T Consensus 1058 eg~~~~dGLEvkV~~G~i--WKeSL~-ELSGGQ-RSLVALsLIlamL~fkPAP 1106 (1174)
T KOG0933|consen 1058 EGKTVLDGLEVKVKFGGI--WKESLS-ELSGGQ-RSLVALSLILAMLKFKPAP 1106 (1174)
T ss_pred CCCccccceEEEEEeCcc--HHHHHH-HhcCch-HHHHHHHHHHHHHcCCCCc
Confidence 333444677777666633 444444 455554 2344445555555554333
No 35
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.11 E-value=3.7 Score=47.44 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 173 ARLHYMKLKKAAITTQCAWRGKVARRELR--KLKMAARETGALQAAKNKLEKQVEELTWRLQ 232 (841)
Q Consensus 173 ~r~~~~~~~~a~~~iQ~~~R~~~aRr~l~--~lk~~a~~~~~l~~~~~~le~kv~el~~~l~ 232 (841)
.|..+..+...+.+.|+.+-++..+++-. .+..-+.+.+.-.+..+.+..++.+|...++
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777788888777776665433 2222233333333444555555555554444
No 36
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=2.6 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 211 GALQAAKNKLEKQVEELTWRLQLE 234 (841)
Q Consensus 211 ~~l~~~~~~le~kv~el~~~l~~e 234 (841)
..+......+...++++++++.+.
T Consensus 737 ~~~~~~~~~~~e~v~e~~~~Ike~ 760 (1174)
T KOG0933|consen 737 HKLLDDLKELLEEVEESEQQIKEK 760 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666544
No 37
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.08 E-value=1.2 Score=51.79 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 213 LQAAKNKLEKQVEELTWRLQ 232 (841)
Q Consensus 213 l~~~~~~le~kv~el~~~l~ 232 (841)
|++....|+.++.+++..+.
T Consensus 162 Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 38
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.02 E-value=0.0074 Score=40.08 Aligned_cols=21 Identities=57% Similarity=0.800 Sum_probs=14.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHH
Q 003183 61 LGRSASIIQRKVRSYLSRKNY 81 (841)
Q Consensus 61 l~~aa~~IQ~~~R~~~~Rk~~ 81 (841)
+..+++.||+.||||++|++|
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777777777766
No 39
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.94 E-value=1.3 Score=49.02 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 003183 294 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR----LEEKVSDMETENQ 369 (841)
Q Consensus 294 ~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~----Le~~l~~le~E~~ 369 (841)
+..+++.+..+...++.++.+.++.+.+++.++.++....+++..+..++...+.+++...+. -..++.+|+.+..
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 345566666666666666666666666666555555554444444444444444433322221 1234566666666
Q ss_pred HHHH
Q 003183 370 ILRQ 373 (841)
Q Consensus 370 ~l~~ 373 (841)
.++.
T Consensus 287 ~Le~ 290 (325)
T PF08317_consen 287 ALEK 290 (325)
T ss_pred HHHH
Confidence 6655
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.90 E-value=2.7 Score=43.87 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE 342 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~ 342 (841)
...+..|..+...++.+..+++.++.++..+.++++.....+..++..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555554444444333333
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.89 E-value=2.7 Score=43.82 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.2
Q ss_pred HHHHHH
Q 003183 366 TENQIL 371 (841)
Q Consensus 366 ~E~~~l 371 (841)
.+.+.+
T Consensus 178 ~~yeri 183 (239)
T COG1579 178 SEYERI 183 (239)
T ss_pred HHHHHH
Confidence 333333
No 42
>PRK09039 hypothetical protein; Validated
Probab=95.86 E-value=1.3 Score=49.33 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 210 TGALQAAKNKLEKQVEELTWRLQLEKRMR 238 (841)
Q Consensus 210 ~~~l~~~~~~le~kv~el~~~l~~e~~~~ 238 (841)
+..+.+....|+.+|.+|..-+..++...
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~ 76 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGN 76 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777776666555433
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.85 E-value=1.9 Score=50.01 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 212 ALQAAKNKLEKQVEELTWRL 231 (841)
Q Consensus 212 ~l~~~~~~le~kv~el~~~l 231 (841)
.|......|+.++..++.++
T Consensus 154 eL~~~~~~Le~e~~~l~~~v 173 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEV 173 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 44
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.83 E-value=7.4 Score=48.38 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 003183 112 SCLRIQRDLRMYLA 125 (841)
Q Consensus 112 Aa~~IQ~~~R~~~~ 125 (841)
+.+.=|-..|.|++
T Consensus 179 ~~~lsQD~aR~FL~ 192 (1074)
T KOG0250|consen 179 MFVLSQDAARSFLA 192 (1074)
T ss_pred chhhcHHHHHHHHh
Confidence 34444555555543
No 45
>PRK02224 chromosome segregation protein; Provisional
Probab=95.76 E-value=1 Score=56.93 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=14.1
Q ss_pred HHHhCCCCeeeeeeEEEcccccHHH
Q 003183 28 LEKVGLEGYQIGKTKVFLRAGQMAD 52 (841)
Q Consensus 28 L~~~~~~~yq~G~TKvF~rag~~a~ 52 (841)
..-+|+|.-.|=.| ||++.|.+..
T Consensus 119 ~~llg~~~~~f~~~-~~i~Qge~~~ 142 (880)
T PRK02224 119 TELLRMDAEAFVNC-AYVRQGEVNK 142 (880)
T ss_pred HHHHCCCHHHhcce-eEeeccChHH
Confidence 33346664444333 7888888753
No 46
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.75 E-value=2 Score=42.93 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 304 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 304 e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
|.++|+.....+++....+-.....++++...+..++..++.....+..+.+-+......|..++..+
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~L 135 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATL 135 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333
No 47
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=95.75 E-value=0.084 Score=57.86 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=74.2
Q ss_pred CCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhcc-CCcCCcchhhHHhhchHHHHHHHhhc
Q 003183 629 DSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLR-RECCTFSNGEYVKAGLAELELWCCQA 707 (841)
Q Consensus 629 ~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~~ 707 (841)
+.++..+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. -+..|-.--.++...|..+|.++.+.
T Consensus 175 ~~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~ 253 (311)
T PF04091_consen 175 GEPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSL 253 (311)
T ss_dssp -S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 346778999999999998654 5789999999999999999999999988754 23444445578889999999999986
Q ss_pred cc--ccccCcHHHhHHHHHHHHHHhccccccccHHHHHhccCCCCCHHHHHHHHhcCC
Q 003183 708 KE--EYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYW 763 (841)
Q Consensus 708 ~~--~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y~ 763 (841)
.. .-.+....+|..++|.++||....-..--+.+++..-.+.++|..+..||..|+
T Consensus 254 ~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 254 PVPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SSSS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred cCcccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 10 124556789999999999999874344433456656688999999999988774
No 48
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=7 Score=46.46 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=6.3
Q ss_pred HHHHHhcCCC
Q 003183 755 LYRICTLYWD 764 (841)
Q Consensus 755 i~kil~~Y~~ 764 (841)
+.+++.+|.+
T Consensus 1053 v~qviamYdY 1062 (1118)
T KOG1029|consen 1053 VCQVIAMYDY 1062 (1118)
T ss_pred cceeEEeecc
Confidence 4556677775
No 49
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.60 E-value=2.7 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 215 AAKNKLEKQVEELTWRLQLEKR 236 (841)
Q Consensus 215 ~~~~~le~kv~el~~~l~~e~~ 236 (841)
....+|+.+++.|+.++.....
T Consensus 408 ke~KnLs~k~e~Leeri~ql~q 429 (1195)
T KOG4643|consen 408 KEHKNLSKKHEILEERINQLLQ 429 (1195)
T ss_pred HHhHhHhHHHHHHHHHHHHHHH
Confidence 3344566666666655554433
No 50
>PTZ00014 myosin-A; Provisional
Probab=95.60 E-value=0.02 Score=70.17 Aligned_cols=41 Identities=17% Similarity=0.036 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 003183 111 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNE 151 (841)
Q Consensus 111 ~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~~ 151 (841)
..++.||++||||++|+.|.+.+.+++.||+.+||+++++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888888888888888888888887754
No 51
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.58 E-value=5.3 Score=44.94 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
+..-+.+..+|..+-.+|+..|.+++.+..
T Consensus 219 l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 219 LSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555655553333
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.54 E-value=1.3 Score=51.34 Aligned_cols=76 Identities=26% Similarity=0.354 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.....++.+..+|+.++++++.++++.++...............+.+++.++..++..+..+++++..|..|+..+
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3556677777777888888877777777766666666665555566666555555555555555555555555544
No 53
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.48 E-value=2.1 Score=45.79 Aligned_cols=52 Identities=33% Similarity=0.305 Sum_probs=35.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 322 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 322 ~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++.+++...+.+-+..++...+..-.-+++++++|++-+..++...+.++-
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 3444445555555555555555555667889999999999999988887643
No 54
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.47 E-value=0.016 Score=38.41 Aligned_cols=19 Identities=42% Similarity=0.614 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 003183 111 ASCLRIQRDLRMYLAKKAY 129 (841)
Q Consensus 111 ~Aa~~IQ~~~R~~~~r~~~ 129 (841)
.+|+.||+.||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5666777777777777665
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.40 E-value=4.3 Score=42.72 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
++..|+.+...+...+..++..-.....+....+.....+..++..++.........+..|+..+..|+.++...
T Consensus 142 ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 142 KIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333333344444444445555555544555555555555555555555543
No 56
>PRK03918 chromosome segregation protein; Provisional
Probab=95.33 E-value=2.5 Score=53.46 Aligned_cols=13 Identities=15% Similarity=0.733 Sum_probs=8.5
Q ss_pred eEEEcccccHHHH
Q 003183 41 TKVFLRAGQMADL 53 (841)
Q Consensus 41 TKvF~rag~~a~L 53 (841)
.=||++.|.+..+
T Consensus 128 ~~~~~~Qg~~~~~ 140 (880)
T PRK03918 128 NAIYIRQGEIDAI 140 (880)
T ss_pred eeEEEeccchHHH
Confidence 3377788877544
No 57
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.97 E-value=3 Score=39.63 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..|..++..++..+..|...|..|-+
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666665543
No 58
>PRK09039 hypothetical protein; Validated
Probab=94.92 E-value=0.69 Score=51.42 Aligned_cols=141 Identities=9% Similarity=0.098 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccch
Q 003183 213 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPV 292 (841)
Q Consensus 213 l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~ 292 (841)
|.+...+.+.++.+++.++..- .++..-.......++.++.+++.++..++.. ++.++...+... +...
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L----~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~----r~~Le~~~~~~~---~~~~ 112 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAEL----ADLLSLERQGNQDLQDSVANLRASLSAAEAE----RSRLQALLAELA---GAGA 112 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhh---hhcc
Confidence 6777888888888888777641 1122222344567777777777777655443 222222211110 0000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 293 IDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 293 ~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~l 364 (841)
..+.+...+..+....+....+....+..+..+++.++.....+...+..++.+..+.+..+++|+..|...
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 022344444444444444444444444444444444444444444444444444444444444444444333
No 59
>PRK03918 chromosome segregation protein; Provisional
Probab=94.87 E-value=2.9 Score=52.85 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 211 GALQAAKNKLEKQVEELTWRLQ 232 (841)
Q Consensus 211 ~~l~~~~~~le~kv~el~~~l~ 232 (841)
..+......++.++.++...+.
T Consensus 528 ~~l~~~~~~l~~~l~~l~~~l~ 549 (880)
T PRK03918 528 EKLKEKLIKLKGEIKSLKKELE 549 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444445444444444444
No 60
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.83 E-value=3 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 215 AAKNKLEKQVEELTWRLQLEKRM 237 (841)
Q Consensus 215 ~~~~~le~kv~el~~~l~~e~~~ 237 (841)
.....+++++.++++.++..++.
T Consensus 358 ~~~~q~~~ql~~le~~~~e~q~~ 380 (980)
T KOG0980|consen 358 RRIEQYENQLLALEGELQEQQRE 380 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34555666777777666655543
No 61
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.81 E-value=5.7 Score=40.96 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 333 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~ 333 (841)
...|+.++..+....+.+++-+.+++.....++..+
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLErak 128 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh
Confidence 344555555556666666666666666655555444
No 62
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.79 E-value=4.1 Score=39.28 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le 365 (841)
++..|..+...++..+..+.
T Consensus 116 kv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 116 KVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 33333333334444443333
No 63
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.78 E-value=6.6 Score=41.55 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 247 QENAKLQSALQEMQLQFKESKEKL 270 (841)
Q Consensus 247 ~e~~~L~~~l~~l~~~l~~~~~~l 270 (841)
+++++|+.++.+++..+.+.++.+
T Consensus 80 ~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 80 AEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544443
No 64
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.70 E-value=9.3 Score=45.57 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
...+..+......++.++..+...+.+++....+ ..++..++.+.+..+...+..+.++..+...++.+...+..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~----~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE----FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666666655544443332 22223333344444444444444444444555555554433
No 65
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.69 E-value=5.1 Score=44.33 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETE 367 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E 367 (841)
.++..|+.++..|+.-
T Consensus 276 ~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555443
No 66
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=11 Score=43.63 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 209 ETGALQAAKNKLEKQVE 225 (841)
Q Consensus 209 ~~~~l~~~~~~le~kv~ 225 (841)
+++.+++.+..|++++.
T Consensus 236 ~ie~l~~~n~~l~e~i~ 252 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMIN 252 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 67
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.54 E-value=11 Score=45.65 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=7.0
Q ss_pred HHHHHHHHHhcc
Q 003183 721 HIRQAVGFLVIH 732 (841)
Q Consensus 721 ~l~Qa~~lLq~~ 732 (841)
.++.|++-.+..
T Consensus 851 vLVeaAdkvV~~ 862 (980)
T KOG0980|consen 851 VLVEAADKVVTG 862 (980)
T ss_pred HHHHHhhhHhcC
Confidence 455666666654
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.47 E-value=8.1 Score=46.06 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKK 318 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~ 318 (841)
+.++|+++...+..++..+++.
T Consensus 352 k~~eLEKkrd~al~dvr~i~e~ 373 (1265)
T KOG0976|consen 352 KLNELEKKRDMALMDVRSIQEK 373 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4444444444444444444433
No 69
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.43 E-value=4.1 Score=49.81 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcc-
Q 003183 210 TGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLM---KEIEVAKKEAEKVP- 285 (841)
Q Consensus 210 ~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~---~e~~~~~~~~ee~~- 285 (841)
..+|......+++++.-|++.+++.-.. -...+.|+..++.+++.++.+..++..... ..+.+.....+.+.
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~en----ll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer 247 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFEN----LLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAER 247 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhc
Confidence 3467777777888877777666632211 112234445555555555555544432211 11222222222220
Q ss_pred ---ccccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 286 ---VVQEV---PVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 359 (841)
Q Consensus 286 ---~~~e~---~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~ 359 (841)
..++. ...-.+++++|...|.-|.++.+-|++++..++.+.+. ..+..++..+..++.+++.+....+.
T Consensus 248 ~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-----~tleseiiqlkqkl~dm~~erdtdr~ 322 (1195)
T KOG4643|consen 248 PDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-----ATLESEIIQLKQKLDDMRSERDTDRH 322 (1195)
T ss_pred CCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHhhhhHHH
Confidence 01110 00124466666666666666666666555555544422 22334444555566666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 003183 360 KVSDMETENQILRQ 373 (841)
Q Consensus 360 ~l~~le~E~~~l~~ 373 (841)
++.+|..||..++.
T Consensus 323 kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 323 KTEELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHHHHHHH
Confidence 66667777666654
No 70
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.25 E-value=11 Score=46.84 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~~l 371 (841)
..+++...+|..|++++...
T Consensus 1724 ~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1724 QALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHhhhHHHHHHHH
Confidence 33444455555555555543
No 71
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.23 E-value=5.4 Score=38.21 Aligned_cols=27 Identities=30% Similarity=0.339 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFE 327 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~ 327 (841)
+..++..|...+...+.++.+++....
T Consensus 78 l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 78 LRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444444444444444444333
No 72
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.18 E-value=9.3 Score=41.89 Aligned_cols=13 Identities=8% Similarity=0.422 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 003183 361 VSDMETENQILRQ 373 (841)
Q Consensus 361 l~~le~E~~~l~~ 373 (841)
+.+|+.....+++
T Consensus 273 i~~Lk~~~~~Le~ 285 (312)
T smart00787 273 IEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 73
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.13 E-value=11 Score=41.34 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
..+..+..++..++.++.....|.+.|
T Consensus 262 ~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 262 AEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 74
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.10 E-value=17 Score=43.58 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+...-..|..|+.++.+++...-.+.....++.........-.+++..++.+++.++..+++.+.....|...++.
T Consensus 153 ~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 153 ATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345556677778888888887776666655555444333322223344455555555555555555555555554433
No 75
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.01 E-value=27 Score=45.52 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=11.2
Q ss_pred HHHHHHHhCC--CCeeeeeeEEEcccccHH
Q 003183 24 CKRLLEKVGL--EGYQIGKTKVFLRAGQMA 51 (841)
Q Consensus 24 ~~~iL~~~~~--~~yq~G~TKvF~rag~~a 51 (841)
...+|...++ +.|. |+..|.+.
T Consensus 122 ~~~~l~~~~~~~~~~~------~~~qg~~~ 145 (1164)
T TIGR02169 122 IHDFLAAAGIYPEGYN------VVLQGDVT 145 (1164)
T ss_pred HHHHHHHcCCCcCcce------EEecchHH
Confidence 4455665544 4553 34466653
No 76
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.99 E-value=12 Score=41.20 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 354 MHRLEEKVSDMETENQIL 371 (841)
Q Consensus 354 ~~~Le~~l~~le~E~~~l 371 (841)
+..||.+...++.|...+
T Consensus 261 lq~lEt~q~~leqeva~l 278 (499)
T COG4372 261 LQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 77
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.92 E-value=3.2 Score=43.41 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 308 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 308 L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
|+.+...|.+..+.+++....+..+...-+.++.-++.++...+..++.|+.++.+++.|+++.++.
T Consensus 65 LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 65 LKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444545444444444444445555666666777777888888888888776653
No 78
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.86 E-value=23 Score=44.22 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~l 371 (841)
.+..+..+...++....++..+
T Consensus 441 i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 441 IEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 79
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.82 E-value=17 Score=48.12 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 003183 354 MHRLEEKVSDMETE 367 (841)
Q Consensus 354 ~~~Le~~l~~le~E 367 (841)
+.+++.++..|+.+
T Consensus 1030 l~el~~eI~~l~~~ 1043 (1311)
T TIGR00606 1030 LKEVEEELKQHLKE 1043 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 80
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=93.70 E-value=0.14 Score=63.80 Aligned_cols=148 Identities=16% Similarity=0.092 Sum_probs=111.0
Q ss_pred cchHHHHHhhccccCCChHHHHHHHHHHh--CCCCeeeeeeEEEcccccHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHH
Q 003183 3 FLLNNFLTVYGIIVSSDEVTACKRLLEKV--GLEGYQIGKTKVFLRAGQMADLD-ARRTEVLGRSASIIQRKVRSYLSRK 79 (841)
Q Consensus 3 ~~f~eF~~RY~~L~~~d~~~~~~~iL~~~--~~~~yq~G~TKvF~rag~~a~Le-~~R~~~l~~aa~~IQ~~~R~~~~Rk 79 (841)
+++.+|..-+++..+.............+ +.++|+.|++++|........++ .+..+....-+...|++++....++
T Consensus 857 i~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~ 936 (1062)
T KOG4229|consen 857 ISPQDSVNQSRIGLPETVDTVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERK 936 (1062)
T ss_pred ccchhccccccccCCccchhhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccc
Confidence 34556666666666533333333333322 45799999999999988886554 4434444323678899999999999
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 003183 80 NYIMLRRSAIHIQAACRGQLARTVYES-MRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNEL 152 (841)
Q Consensus 80 ~~~~~r~aai~IQ~~~Rg~laR~~~~~-~r~~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~~~ 152 (841)
.+.++..+.+.+| |++++.|+.... .....+|.-+|..|+.+..+..+...+.+++.+|..+++...+..+
T Consensus 937 ~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 937 GLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred cchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 9999999999999 999998876653 2234788889999999999999999999999999999988877654
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.68 E-value=22 Score=43.33 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
.+..++.+++.++.++.+++.+..
T Consensus 443 ~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 443 EIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443
No 82
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.62 E-value=12 Score=40.25 Aligned_cols=78 Identities=23% Similarity=0.286 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES-----------KIVQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~-----------~~~~L~~e~~~Le~~l~~l 364 (841)
.-+..+.+|+..++.+++++.....|.+.+...+..+..+...-...+.+ -++.-+.-+..|+.++++|
T Consensus 134 ~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 134 GLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHH
Confidence 35566777888888888888777777666666665544443322211111 1122334456666666666
Q ss_pred HHHHHHHHH
Q 003183 365 ETENQILRQ 373 (841)
Q Consensus 365 e~E~~~l~~ 373 (841)
--|...+-|
T Consensus 214 m~EirnLLQ 222 (401)
T PF06785_consen 214 MYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHH
Confidence 666665544
No 83
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.38 E-value=9.1 Score=45.70 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
..++..+..++..-++...+|+.++..
T Consensus 453 r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 453 REEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444444443
No 84
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.36 E-value=11 Score=38.71 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE-AESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~-~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
++..++++...|+-+.+.|..++..++.++.++.........++.. ..-+..-|+..+..|.+.+++.+.++...
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777766666666666666555444444322 23344446677777777777777666654
No 85
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.36 E-value=7.3 Score=37.01 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 330 SKISEERLKQALEAESKIVQLKTAMHRLEEKVS 362 (841)
Q Consensus 330 ~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~ 362 (841)
+..+..+..++.+++.++.+|..+..-|=.+|+
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555566666666655555554443
No 86
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.26 E-value=24 Score=42.40 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~~l 371 (841)
.++.+-++-+..++.+++.+
T Consensus 284 ~ElSqkeelVk~~qeeLd~l 303 (1265)
T KOG0976|consen 284 DELSQKEELVKELQEELDTL 303 (1265)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 33333333333344444433
No 87
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.19 E-value=6 Score=42.72 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 003183 364 METENQILR 372 (841)
Q Consensus 364 le~E~~~l~ 372 (841)
.++|+..++
T Consensus 295 aQEElk~lR 303 (306)
T PF04849_consen 295 AQEELKTLR 303 (306)
T ss_pred HHHHHHHhh
Confidence 344444433
No 88
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.18 E-value=7.7 Score=44.10 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.......++.+|.+++-++.+++.....+.+++..........-...+.+..++++...+....+..-++|++.++.
T Consensus 227 el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 227 ELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44555666777777777777776655555555443332222112222333344444444455555566666666554
No 89
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.10 E-value=11 Score=41.20 Aligned_cols=76 Identities=16% Similarity=0.328 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
.+..+..++.+++.+++.+...+.+++.++++.......+..++..+...+++.......|+.++..|+.|+..++
T Consensus 62 ~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 62 QIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666665555555555555555554554444444555555555555555543
No 90
>PRK02224 chromosome segregation protein; Provisional
Probab=93.08 E-value=32 Score=43.50 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=8.7
Q ss_pred HhhhHHHHHHHHHHHH
Q 003183 61 LGRSASIIQRKVRSYL 76 (841)
Q Consensus 61 l~~aa~~IQ~~~R~~~ 76 (841)
...++.+=|.-+-.++
T Consensus 129 f~~~~~i~Qge~~~~l 144 (880)
T PRK02224 129 FVNCAYVRQGEVNKLI 144 (880)
T ss_pred hcceeEeeccChHHHH
Confidence 3444445566666665
No 91
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=93.08 E-value=2.8 Score=49.28 Aligned_cols=125 Identities=17% Similarity=0.213 Sum_probs=85.3
Q ss_pred CccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCcCCcchhhHHhhchHHHHHHHhhccc
Q 003183 630 SASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKE 709 (841)
Q Consensus 630 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~ 709 (841)
+++++....+..|...+..|... +++.....+...+..-|+..+|+.++++. -.|..-|.|+.+=+.. |+.--+
T Consensus 352 ~~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~---L~~~~~- 425 (494)
T PF04437_consen 352 SPSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRA---LFSVFS- 425 (494)
T ss_dssp ---GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHH---HHTTS--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHH---HHHHHH-
Confidence 45677889999999999999999 99999999999999999999999999975 4566667777766644 444433
Q ss_pred ccccCcHHHhHHHHHHHHHHhccccccccH--------------HHHHhcc-CCCCCHHHHHHHHh
Q 003183 710 EYAGSSWDELKHIRQAVGFLVIHQKYRISY--------------DEITNDL-CPILSVQQLYRICT 760 (841)
Q Consensus 710 ~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~--------------~~i~~~~-C~~Ls~~Qi~kil~ 760 (841)
.+......++..|.+++.||-++..+.... .++..+. =..||+.++.+||.
T Consensus 426 ~~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 426 QYTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp -TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 244445589999999999999986543211 1122111 14688888888775
No 92
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=17 Score=41.74 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003183 354 MHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 354 ~~~Le~~l~~le~E~~~l~~~ 374 (841)
.+.|+-++.+|++|...+..+
T Consensus 196 yEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 196 YEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666554
No 93
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.92 E-value=13 Score=38.46 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
+-+++.+|+++...|..|+....
T Consensus 162 llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666543
No 94
>PRK01156 chromosome segregation protein; Provisional
Probab=92.80 E-value=20 Score=45.56 Aligned_cols=29 Identities=10% Similarity=0.294 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
...+.++..++..++..+..++.+...++
T Consensus 415 ~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 415 NVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666665655555544
No 95
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.79 E-value=26 Score=41.70 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVS 313 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~ 313 (841)
....++.+.+.++..+.
T Consensus 307 ~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 307 KLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 96
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.75 E-value=14 Score=48.82 Aligned_cols=75 Identities=24% Similarity=0.241 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 294 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 294 ~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+...+..|..++..|+.++.+.+..+.++.+....++ .....++......+..+..++.+++....+|.......
T Consensus 1305 d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~ 1379 (1822)
T KOG4674|consen 1305 DKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEK 1379 (1822)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777766665 22233344444445555555555555555554444443
No 97
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.53 E-value=13 Score=44.37 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKID 320 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~ 320 (841)
.....+.++...++..+..+...+.
T Consensus 348 ~~~~~lekeL~~Le~~~~~~~~~i~ 372 (569)
T PRK04778 348 ESVRQLEKQLESLEKQYDEITERIA 372 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444
No 98
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.49 E-value=18 Score=38.94 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le~E 367 (841)
.+..++.++..++..+..|...
T Consensus 229 e~~~~~~elre~~k~ik~l~~~ 250 (294)
T COG1340 229 EFRNLQNELRELEKKIKALRAK 250 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333
No 99
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.36 E-value=17 Score=44.64 Aligned_cols=60 Identities=22% Similarity=0.260 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 302 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 361 (841)
Q Consensus 302 ~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l 361 (841)
..|+..|-.-+.+-.+.+.++.+....++.+...+..++...+..+..|+-++..+..++
T Consensus 105 ~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 105 AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444444445555555555555555444444
No 100
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.29 E-value=13 Score=37.16 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEET 329 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~ 329 (841)
..+..|+.++.++..+.+.+.++..++-.....+
T Consensus 102 ~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~L 135 (193)
T PF14662_consen 102 AEIETLQEENGKLLAERDGLKKRSKELATEKATL 135 (193)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHH
Confidence 3556666666666666666666655554443333
No 101
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.09 E-value=31 Score=40.84 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTL 311 (841)
Q Consensus 300 ~L~~e~~~L~~~ 311 (841)
.|+.+..+++.+
T Consensus 341 ~L~~eL~~~r~e 352 (522)
T PF05701_consen 341 SLEAELNKTRSE 352 (522)
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 102
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.09 E-value=21 Score=42.77 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++..++.++..+.+++...++....|..
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~ 475 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVK 475 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666555544
No 103
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.91 E-value=1.4 Score=44.94 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 335 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 335 ~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+..+.+..+.+.+..|+-++..+++++.+++.||..|-+
T Consensus 141 ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 141 EKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455566777777888888888888888887733
No 104
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.83 E-value=22 Score=43.83 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 245 KTQENAKLQSALQEMQLQFKESKEKLM 271 (841)
Q Consensus 245 ~~~e~~~L~~~l~~l~~~l~~~~~~l~ 271 (841)
+.++.+.|+.+++.+...++..+..+.
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334455566666666666555544433
No 105
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.67 E-value=28 Score=39.42 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 212 ALQAAKNKLEKQVEELTWRLQ 232 (841)
Q Consensus 212 ~l~~~~~~le~kv~el~~~l~ 232 (841)
.|+-.+--||++|++|+....
T Consensus 335 dLq~sN~yLe~kvkeLQ~k~~ 355 (527)
T PF15066_consen 335 DLQCSNLYLEKKVKELQMKIT 355 (527)
T ss_pred HhhhccHHHHHHHHHHHHHhh
Confidence 344444456666666654433
No 106
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.59 E-value=21 Score=42.88 Aligned_cols=10 Identities=50% Similarity=0.823 Sum_probs=4.7
Q ss_pred ccCCCccccc
Q 003183 798 LDDNSSIPFS 807 (841)
Q Consensus 798 ~D~~~~~Pf~ 807 (841)
+-++-++||-
T Consensus 594 L~~~pcipff 603 (617)
T PF15070_consen 594 LGSNPCIPFF 603 (617)
T ss_pred CCCCCcccce
Confidence 3344455553
No 107
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.47 E-value=25 Score=38.57 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMET 366 (841)
Q Consensus 352 ~e~~~Le~~l~~le~ 366 (841)
.++..|+.++..++.
T Consensus 271 ~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 271 KEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555544443
No 108
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.40 E-value=59 Score=42.71 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=15.5
Q ss_pred HHhcCCCCCCCCCCCCHH-HHHHHHhhhh
Q 003183 758 ICTLYWDDNYNTRSVSPN-VISSMRILMT 785 (841)
Q Consensus 758 il~~Y~~d~~e~~~v~~~-~i~~v~~~~~ 785 (841)
....|...+.. ..||++ ++..|+..+.
T Consensus 1054 ~~~~w~~~~~~-~~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1054 EYELWRSSDGS-RELPSEEYVNALRELLD 1081 (1201)
T ss_pred HHHHHhcccCc-ccCCCHHHHHHHHHHHH
Confidence 44455333332 358888 8877766654
No 109
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.38 E-value=2.7 Score=43.06 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..++..++.+..+++.+++++..... .+..++............+++++..+|++++..++.++..++.+++.++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777766666654433 22222222222222233334445555555555555555555555555543
No 110
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.27 E-value=7.7 Score=39.22 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSD 363 (841)
Q Consensus 352 ~e~~~Le~~l~~ 363 (841)
.....+.+.+..
T Consensus 172 ~~~~~l~~~~~~ 183 (191)
T PF04156_consen 172 ENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 111
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.26 E-value=31 Score=39.24 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEET 329 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~ 329 (841)
.+.+...++.++.+++.++.+.+..+.++
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 229 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDEL 229 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 112
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.21 E-value=21 Score=37.13 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 321 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 321 e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
|++...+++..-..++-.+++..+..+.-|+++++.-+.+|+.++..+..+.+
T Consensus 254 Elkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 254 ELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555566666788888888888888888777654
No 113
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.12 E-value=37 Score=39.83 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE----AESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~----~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
...|...+...+..|+.++.+++.+...+++..+.+..++.+ -+..+.+...++..+++++..+-.|++.|..
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLD 370 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666666666666666666665555555444322 2444555667777777777777777776633
No 114
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.12 E-value=33 Score=40.87 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 340 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l 340 (841)
....|......|+..+.+++.......+.+..+..+.+.+.+++
T Consensus 163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qL 206 (739)
T PF07111_consen 163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQL 206 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444444444444444444333
No 115
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.07 E-value=41 Score=40.29 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 251 KLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKK 318 (841)
Q Consensus 251 ~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~ 318 (841)
.....++.++.++..+-..+++|..+.+........ -...+..+...+..|..+++.+.++
T Consensus 279 ~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~-------l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 279 EAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDT-------LPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344444444444444444444444332222211 1234445555555555555555555
No 116
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=90.82 E-value=19 Score=36.07 Aligned_cols=73 Identities=26% Similarity=0.317 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES-------KIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~-------~~~~L~~e~~~Le~~l~~le~E 367 (841)
..++.+|..+...+.+.+..+..+-+....+.+..+.....+..++++++. .+..|..+..+|+..+.....+
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 335555666666666666666655555555555554444444445544433 3334444444444444333333
No 117
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.78 E-value=37 Score=42.95 Aligned_cols=20 Identities=40% Similarity=0.388 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 214 QAAKNKLEKQVEELTWRLQL 233 (841)
Q Consensus 214 ~~~~~~le~kv~el~~~l~~ 233 (841)
.+.+.++++.+.++...++.
T Consensus 507 ~~~~~~l~~~~~~~~eele~ 526 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELED 526 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444544444444443
No 118
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.57 E-value=4.3 Score=44.58 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++.++...++.++.-....++.+++
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555566555554
No 119
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.16 E-value=28 Score=36.87 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 346 KIVQLKTAMHRLEEKVSDMETENQILRQQS 375 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le~E~~~l~~~~ 375 (841)
.+...++.+++++++|..|+.|++.|+.+.
T Consensus 194 ei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556778888888888888888877643
No 120
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.15 E-value=80 Score=42.13 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 211 GALQAAKNKLEKQVEELTWRLQ 232 (841)
Q Consensus 211 ~~l~~~~~~le~kv~el~~~l~ 232 (841)
..+.....+|+.+......-+.
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544444333
No 121
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.12 E-value=2.9 Score=42.30 Aligned_cols=29 Identities=31% Similarity=0.522 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKF 326 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~ 326 (841)
++++.+++..|-.++++++.++++...++
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333333333333333333
No 122
>PRK01156 chromosome segregation protein; Provisional
Probab=89.93 E-value=51 Score=41.86 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCH
Q 003183 636 QSIIDSLNTLLSTLKQNFVPP 656 (841)
Q Consensus 636 ~~il~~L~~~~~~l~~~~v~~ 656 (841)
...+..|+.+...+...+++.
T Consensus 732 ~~~~~~l~~~r~~l~k~~~~~ 752 (895)
T PRK01156 732 KKAIGDLKRLREAFDKSGVPA 752 (895)
T ss_pred HHHHHHHHHHHHHhhhccchH
Confidence 334555556666666666655
No 123
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.89 E-value=34 Score=38.28 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 244 AKTQENAKLQSALQEMQLQFKESK 267 (841)
Q Consensus 244 ~~~~e~~~L~~~l~~l~~~l~~~~ 267 (841)
...+|+..|+.+...|+.+..+.+
T Consensus 247 rlkqEnlqLvhR~h~LEEq~reqE 270 (502)
T KOG0982|consen 247 RLKQENLQLVHRYHMLEEQRREQE 270 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445777888888888777776654
No 124
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.70 E-value=69 Score=40.73 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~l 371 (841)
+..++..+..+++++..|++.+
T Consensus 672 ~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 672 LERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666665
No 125
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.69 E-value=49 Score=40.32 Aligned_cols=22 Identities=36% Similarity=0.367 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKK 318 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~ 318 (841)
.+.+|+.||-.|+.++..|+..
T Consensus 98 dyselEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQS 119 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777776666666644
No 126
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.47 E-value=5.7 Score=32.26 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=28.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 322 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 366 (841)
Q Consensus 322 ~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~ 366 (841)
+..++..++........++.+++.++.+|..++..|++++..+..
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444455555556666777777777777777777777766543
No 127
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.42 E-value=38 Score=37.38 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 343 AESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 343 ~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
-+.+...|+.+...|+.++..++.-
T Consensus 257 re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 257 RERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555433
No 128
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.39 E-value=37 Score=37.16 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
|+.|-.|..-|.+.+..++.|...+++
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~ 217 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888877655
No 129
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.36 E-value=5.1 Score=41.13 Aligned_cols=14 Identities=43% Similarity=0.518 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSS 314 (841)
Q Consensus 301 L~~e~~~L~~~l~~ 314 (841)
|..++.+|++++..
T Consensus 137 L~~~n~~L~~~l~~ 150 (206)
T PRK10884 137 LKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 130
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.29 E-value=81 Score=41.98 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=12.8
Q ss_pred chhhHHhhchHHHHHHHhhcc
Q 003183 688 SNGEYVKAGLAELELWCCQAK 708 (841)
Q Consensus 688 s~G~qIr~nls~Le~W~~~~~ 708 (841)
.-|-.|+-.|..=++|+...|
T Consensus 1117 ~v~~~l~~ri~~A~~~v~~mN 1137 (1353)
T TIGR02680 1117 EIARHLQSLILAAERQVAAMN 1137 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666544
No 131
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.21 E-value=56 Score=39.02 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=14.8
Q ss_pred CCcCCcchhhHHhhchHHHHHHHhhccc
Q 003183 682 RECCTFSNGEYVKAGLAELELWCCQAKE 709 (841)
Q Consensus 682 ~~~cs~s~G~qIr~nls~Le~W~~~~~~ 709 (841)
+|..-|++ .++-.|+.+.|+
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGL 775 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCH
Confidence 36778888 456679988776
No 132
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.92 E-value=46 Score=37.69 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 174 RLHYMKLKKAAITTQCAWRGKVARRE 199 (841)
Q Consensus 174 r~~~~~~~~a~~~iQ~~~R~~~aRr~ 199 (841)
+++|+.+.......|+.+.++..+.+
T Consensus 301 ~ek~r~l~~D~nk~~~~~~~mk~K~~ 326 (622)
T COG5185 301 REKWRALKSDSNKYENYVNAMKQKSQ 326 (622)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45667777777788877776665543
No 133
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.85 E-value=4.8 Score=33.63 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 362 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~ 362 (841)
|+.++..|+..++.+..++.-.+.....+..+++.....+..+-..+.+|+.+++.|+.++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677766666666655555566666655555555555555566665555555543
No 134
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.83 E-value=46 Score=40.88 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE-----AESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~-----~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
++.+|.+.++.++..+...+++++.+.+..+..... .+.... -+.+....++-+.+.-++|.++-++.+.++
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~-~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIES-QKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIK 712 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444432221110 000000 122334444555555555555555555544
No 135
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=88.76 E-value=0.13 Score=64.18 Aligned_cols=159 Identities=21% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 003183 209 ETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESK----------EKLMKEIEVAK 278 (841)
Q Consensus 209 ~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~----------~~l~~e~~~~~ 278 (841)
.+..+......|+.+|.+|...|+.|+..+...+.. ...|..++++|...+++.. .+.+.+...++
T Consensus 33 ~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~----r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lr 108 (859)
T PF01576_consen 33 LRAQLQKKIKELQARIEELEEELESERQARAKAEKQ----RRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLR 108 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHH
Confidence 344555666667777777777777666544333322 2455555555555554432 11222333344
Q ss_pred HHHhhcccccccch------------hhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003183 279 KEAEKVPVVQEVPV------------IDHAVV-------EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ 339 (841)
Q Consensus 279 ~~~ee~~~~~e~~~------------~~~~~~-------~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~ 339 (841)
+.+++.....+... .-.+.+ ..+++++..++.+++++...+..+.+...+.++....+...
T Consensus 109 r~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~q 188 (859)
T PF01576_consen 109 RDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQ 188 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Confidence 33333210000000 011122 23344444444445555544444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+.++..++.+....+.++.....+|+.|+..+
T Consensus 189 L~El~~klee~er~~~el~~~k~kL~~E~~eL 220 (859)
T PF01576_consen 189 LNELQAKLEESERQRNELTEQKAKLQSENSEL 220 (859)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555555544
No 136
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.66 E-value=18 Score=40.39 Aligned_cols=17 Identities=29% Similarity=0.802 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 219 KLEKQVEELTWRLQLEK 235 (841)
Q Consensus 219 ~le~kv~el~~~l~~e~ 235 (841)
-++..+....|+++.|+
T Consensus 186 i~es~vd~~eWklEvER 202 (359)
T PF10498_consen 186 IIESKVDPAEWKLEVER 202 (359)
T ss_pred cccccCCHHHHHHHHHH
Confidence 35555666667777664
No 137
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.53 E-value=60 Score=38.46 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 338 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 338 ~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+.........|+..+..|+.++.+.+.++..+++
T Consensus 295 ~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 295 KELEKAKEEASSLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555554
No 138
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.34 E-value=6.7 Score=43.12 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
...+..+...++.+..++.+++.+++++.+++.++..++..+..+.+..-...-.+...+.-++..++++...+
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl 118 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSL 118 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555444444444433333322233333333444444444444433
No 139
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=88.33 E-value=67 Score=38.83 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
...+.++...+..-++.......+.....+.++...++..+++.+.+..+.++..+++.+..+..++++|+..++.+
T Consensus 540 ~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 540 ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555556666666666666666666677777777777777777777778888888887664
No 140
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.13 E-value=1e+02 Score=40.61 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 003183 115 RIQRDLRMYLAKKAYKDMCFSAVCIQTGMRG 145 (841)
Q Consensus 115 ~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg 145 (841)
.|..++|-......+...+..+..++..++.
T Consensus 227 ~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~ 257 (1201)
T PF12128_consen 227 DIDDWLRDIRASQGFEKVRPEFDKLQQQYRQ 257 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 141
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=88.07 E-value=21 Score=41.68 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=15.1
Q ss_pred chhhHHhhchHHHHHHHhhccc
Q 003183 688 SNGEYVKAGLAELELWCCQAKE 709 (841)
Q Consensus 688 s~G~qIr~nls~Le~W~~~~~~ 709 (841)
+..+-++.-=.++-+|+++.++
T Consensus 707 sed~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 707 SEDVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred ChhHHHHhhhHHHHHHHHhccH
Confidence 3344556666788899998764
No 142
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.94 E-value=51 Score=37.48 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFE 327 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~ 327 (841)
.+..++.+...++.++..++..+.+.+..+.
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554444443
No 143
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=87.67 E-value=70 Score=38.30 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 355 HRLEEKVSDMETENQILR 372 (841)
Q Consensus 355 ~~Le~~l~~le~E~~~l~ 372 (841)
..|.+.+..|++|-..+.
T Consensus 245 ~~L~~tVq~L~edR~~L~ 262 (739)
T PF07111_consen 245 EELLETVQHLQEDRDALQ 262 (739)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444455554444443
No 144
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.41 E-value=8.4 Score=39.19 Aligned_cols=61 Identities=23% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 357 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~L 357 (841)
.+..++.++..|+..+..+...+.+..+.++.+..+...+.-+...+++++..++.+...|
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333333333344444444444333
No 145
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.07 E-value=77 Score=38.35 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE 335 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~ 335 (841)
...|..+++-++++....+...+-+++..++++.-
T Consensus 492 ~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~i 526 (861)
T PF15254_consen 492 FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQI 526 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhH
Confidence 34444555555555555554444444444444433
No 146
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.00 E-value=90 Score=38.80 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..|-.+-..|+..+..+++++...++
T Consensus 470 k~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 470 KELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666665544
No 147
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.96 E-value=41 Score=34.82 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHH---------HHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQAL--EAESKI---------VQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~--~~e~~~---------~~L~~e~~~Le~~l~~le 365 (841)
.+..+......+...+..|+..+.+++.++.+++.....+..+.. .+..++ .+....++++++.+..++
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~e 178 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEME 178 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555544444333321 112222 223456677777777777
Q ss_pred HHHHHHH
Q 003183 366 TENQILR 372 (841)
Q Consensus 366 ~E~~~l~ 372 (841)
.......
T Consensus 179 a~a~a~~ 185 (221)
T PF04012_consen 179 ARAEASA 185 (221)
T ss_pred HHHHHHH
Confidence 7666543
No 148
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.62 E-value=8.1 Score=45.05 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER---LKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~---~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
...++.|+.++..|+..+++++..++.++.+++++......- ..++...+..+..|+.++.+-+..++.|+.++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888877777777777765443321 12234455667777777777777777777777776
Q ss_pred HH
Q 003183 372 RQ 373 (841)
Q Consensus 372 ~~ 373 (841)
++
T Consensus 508 ~k 509 (652)
T COG2433 508 RK 509 (652)
T ss_pred HH
Confidence 54
No 149
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=86.10 E-value=55 Score=35.52 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 305 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 305 ~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~ 368 (841)
+.....++..|..++.+++.+....-.+.+++...+....+.-..|..++.+|+++-.....-+
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555554444444444444444444444445555555555544433333
No 150
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.66 E-value=46 Score=34.19 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=25.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 327 EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 327 ~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.+..........++..++..+...+-.+.+|++.+.....||..|
T Consensus 150 eei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 150 EEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444455555555566677777777777777665
No 151
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.12 E-value=17 Score=42.48 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=33.6
Q ss_pred HHHHHhhccccC--CCh--HHHHHHHHHHhCCC---CeeeeeeEEEcccccH----HHHHHHHHHHHhhhHHHHHHHHHH
Q 003183 6 NNFLTVYGIIVS--SDE--VTACKRLLEKVGLE---GYQIGKTKVFLRAGQM----ADLDARRTEVLGRSASIIQRKVRS 74 (841)
Q Consensus 6 ~eF~~RY~~L~~--~d~--~~~~~~iL~~~~~~---~yq~G~TKvF~rag~~----a~Le~~R~~~l~~aa~~IQ~~~R~ 74 (841)
.+...||++-.. .|+ -+...+.|...|.+ .--=-.|+|-.-.|-- ++=.++...+++.++...=+.++.
T Consensus 96 ~~lArr~G~~~~~~~~P~eeA~~~A~LA~~GvG~ev~~fEdeT~I~VsR~RS~g~GGwSq~RY~R~vh~av~~~~reIee 175 (652)
T COG2433 96 WELARRHGIRVNGKLNPYEEAYACARLASKGVGTEVSVFEDETKITVSRGRSLGPGGWSQNRYRRRVHGAVKRVVREIEE 175 (652)
T ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCCceeEeeeeeeEEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777662 232 23344555555542 2222467766532221 233344445566655444444444
Q ss_pred HH
Q 003183 75 YL 76 (841)
Q Consensus 75 ~~ 76 (841)
-+
T Consensus 176 ~L 177 (652)
T COG2433 176 KL 177 (652)
T ss_pred HH
Confidence 44
No 152
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=85.12 E-value=91 Score=37.12 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=8.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHH
Q 003183 186 TTQCAWRGKV-ARRELRKLKM 205 (841)
Q Consensus 186 ~iQ~~~R~~~-aRr~l~~lk~ 205 (841)
++|..+|.+- +|++.+.+|.
T Consensus 417 Kvqa~~kERDalr~e~kslk~ 437 (961)
T KOG4673|consen 417 KVQALTKERDALRREQKSLKK 437 (961)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 4444443332 3444444443
No 153
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.00 E-value=1.1e+02 Score=38.01 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=7.4
Q ss_pred CCeeeeeeEEEccc
Q 003183 34 EGYQIGKTKVFLRA 47 (841)
Q Consensus 34 ~~yq~G~TKvF~ra 47 (841)
..|+ ..|+|++..
T Consensus 40 p~Y~-A~a~v~v~~ 52 (754)
T TIGR01005 40 PHYK-AQTQVEIAP 52 (754)
T ss_pred ceEE-EEEEEEECC
Confidence 4554 466666654
No 154
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.99 E-value=1.1e+02 Score=38.04 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCCeeeeeeEEEcccccHHHHH----HHHHHHHhhhH
Q 003183 21 VTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLD----ARRTEVLGRSA 65 (841)
Q Consensus 21 ~~~~~~iL~~~~~~~yq~G~TKvF~rag~~a~Le----~~R~~~l~~aa 65 (841)
+.-+-.+|+.. +|-.|+----...|-+..|- ..|-+.|+..|
T Consensus 118 k~evvnLLESA---GFSrsNPYyIV~QGkI~~La~akD~eRL~LLkeVa 163 (1200)
T KOG0964|consen 118 KGEVVNLLESA---GFSRSNPYYIVPQGKINELANAKDSERLELLKEVA 163 (1200)
T ss_pred HHHHHHHHHhc---CcccCCCceEeechhhHHhhcCCcHHHHHHHHHhc
Confidence 34445555554 34444444445666666663 55556665543
No 155
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.97 E-value=1.1e+02 Score=38.30 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 003183 632 SSHWQSIIDSLNTLLS-TLKQNFVPPVLVQKI 662 (841)
Q Consensus 632 ~~~~~~il~~L~~~~~-~l~~~~v~~~l~~q~ 662 (841)
+.+++.+-+-+..=.+ .++-.+|++.+++|.
T Consensus 834 p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y 865 (1072)
T KOG0979|consen 834 PTTMDELDQAITDELTRALKFENVNEDAVQQY 865 (1072)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 4456666665555555 667788888876663
No 156
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.95 E-value=96 Score=38.75 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=14.3
Q ss_pred HHHHHHHHHHh-CCCCeeeeeeE---EEcccccH
Q 003183 21 VTACKRLLEKV-GLEGYQIGKTK---VFLRAGQM 50 (841)
Q Consensus 21 ~~~~~~iL~~~-~~~~yq~G~TK---vF~rag~~ 50 (841)
-..+.+|+-.+ |.++| +|+.| =|+|.|.-
T Consensus 56 SSiVcAIcLglgG~Pk~-lGRak~VgeyIK~G~~ 88 (1072)
T KOG0979|consen 56 SSIVCAICLGLGGKPKL-LGRAKKVGEYIKRGED 88 (1072)
T ss_pred hHHHHHHHHHcCCChhh-ccchhHHHHHHhcCCc
Confidence 34455555555 33444 55554 25566554
No 157
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.79 E-value=40 Score=38.12 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.7
Q ss_pred hhcccc
Q 003183 11 VYGIIV 16 (841)
Q Consensus 11 RY~~L~ 16 (841)
||-+|.
T Consensus 115 rymvLI 120 (493)
T KOG0804|consen 115 RYMVLI 120 (493)
T ss_pred eEEEEE
Confidence 444444
No 158
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.74 E-value=15 Score=30.66 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 307 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 307 ~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
+|+.++..|+..+..+..+++.-......+..+-.....++.....++.+|++++..|..|++..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577788888888887777777666666666555455555666666777777777777777766543
No 159
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.71 E-value=17 Score=32.79 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003183 302 TSENEKLKTLVSSLE 316 (841)
Q Consensus 302 ~~e~~~L~~~l~~l~ 316 (841)
.++++.|+..+..|+
T Consensus 36 ~kqkd~L~~~l~~L~ 50 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQ 50 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 333333333333333
No 160
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=84.57 E-value=18 Score=32.55 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
|..|..+|+++..-|++.+-+...+..++......-...+..++.+++.|.=....|...+..|+.|+...
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777787788887777777777777666655555666666667667666677777777777777643
No 161
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.51 E-value=49 Score=34.63 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+.+..+.+++..|..+.+.++.
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 162
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.43 E-value=46 Score=33.18 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL 337 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~ 337 (841)
+...+..+...++.++....+.+..++..+..++.....+.
T Consensus 85 Kl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 85 KLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555554444444444444444444433
No 163
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.41 E-value=7.6 Score=39.79 Aligned_cols=59 Identities=31% Similarity=0.466 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
++.++.+++++...+++++++...+++.+++ +...|+.+.+.+..+..+|-+|++.++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~--------------~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQK--------------KVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 6666666666666666655554444444443 3444444444444444444455554444
No 164
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.41 E-value=1.3e+02 Score=38.30 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=8.8
Q ss_pred cccHHHHHHHH
Q 003183 47 AGQMADLDARR 57 (841)
Q Consensus 47 ag~~a~Le~~R 57 (841)
.|++.|||+.=
T Consensus 250 ~GmLEYLEDII 260 (1293)
T KOG0996|consen 250 EGMLEYLEDII 260 (1293)
T ss_pred chHHHHHHHHh
Confidence 58899999763
No 165
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.40 E-value=51 Score=35.55 Aligned_cols=23 Identities=9% Similarity=0.289 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
.++..++...+..+..++.....
T Consensus 122 ~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 122 EELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554444443
No 166
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.35 E-value=51 Score=33.57 Aligned_cols=31 Identities=39% Similarity=0.436 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKFEE 328 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e 328 (841)
.++|......++..+.+-..++..+++.++-
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666655554443
No 167
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.27 E-value=67 Score=34.88 Aligned_cols=170 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 196 ARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQE----NAKLQSALQEMQLQFKESKEKLM 271 (841)
Q Consensus 196 aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e----~~~L~~~l~~l~~~l~~~~~~l~ 271 (841)
.+..+..|+. +...|+........+...|...+..-+.....+.....+| -..|-+.++.++.+.+.+...++
T Consensus 25 l~~~~~sL~q---en~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e 101 (310)
T PF09755_consen 25 LRKRIESLQQ---ENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYE 101 (310)
T ss_pred HHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003183 272 KEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVS--------SLEKKIDETEKKFEETSKISEERLKQALEA 343 (841)
Q Consensus 272 ~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~--------~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~ 343 (841)
++.+-+.+.+.. ++..|..++..|+..+. .|...+..++.+........+.+..+-.++
T Consensus 102 ~EEE~ltn~L~r-------------kl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdl 168 (310)
T PF09755_consen 102 QEEEFLTNDLSR-------------KLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDL 168 (310)
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---hhcccCcc
Q 003183 344 ESKIVQLKTAM-HRLEEKVSDMETENQILRQ---QSLLSTPI 381 (841)
Q Consensus 344 e~~~~~L~~e~-~~Le~~l~~le~E~~~l~~---~~~~~~~~ 381 (841)
+..+..=++.+ ..|-.++.+|..|+..++. ++++..|+
T Consensus 169 En~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s 210 (310)
T PF09755_consen 169 ENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPS 210 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
No 168
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=83.69 E-value=86 Score=35.67 Aligned_cols=16 Identities=13% Similarity=0.356 Sum_probs=8.0
Q ss_pred cHHHHHHHHHHHHHHH
Q 003183 634 HWQSIIDSLNTLLSTL 649 (841)
Q Consensus 634 ~~~~il~~L~~~~~~l 649 (841)
+..++-.-|+..+.-|
T Consensus 602 sledl~~~l~k~~~~l 617 (622)
T COG5185 602 SLEDLENELGKVIEEL 617 (622)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555555555444
No 169
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.62 E-value=23 Score=34.37 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 003183 362 SDMETENQILR 372 (841)
Q Consensus 362 ~~le~E~~~l~ 372 (841)
.+.+.|...|+
T Consensus 136 rkke~E~~kLk 146 (151)
T PF11559_consen 136 RKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 170
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=83.60 E-value=0.85 Score=55.37 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=29.9
Q ss_pred CccchHHHHHhhccccC-------CChHHHHHHHHHHhCCC
Q 003183 1 MFFLLNNFLTVYGIIVS-------SDEVTACKRLLEKVGLE 34 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-------~d~~~~~~~iL~~~~~~ 34 (841)
+|++|.||+.||++|++ .|++.+|+.||..++++
T Consensus 608 ~R~~~~~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~ 648 (674)
T cd01378 608 YRQTFDKFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNID 648 (674)
T ss_pred ccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCC
Confidence 69999999999999993 47899999999988754
No 171
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.27 E-value=15 Score=37.42 Aligned_cols=23 Identities=17% Similarity=0.266 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 302 TSENEKLKTLVSSLEKKIDETEK 324 (841)
Q Consensus 302 ~~e~~~L~~~l~~l~~~~~e~e~ 324 (841)
.+++..++.++++.++.+..++.
T Consensus 155 ~~eleele~e~ee~~erlk~le~ 177 (290)
T COG4026 155 LKELEELEAEYEEVQERLKRLEV 177 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 172
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=83.14 E-value=1.1e+02 Score=36.55 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 339 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 375 (841)
Q Consensus 339 ~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~~ 375 (841)
+..-.+.++..|+.+++.-...+..|+.+|..++.+.
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~ 624 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKI 624 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777788888998887754
No 173
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=83.11 E-value=1.4e+02 Score=38.53 Aligned_cols=20 Identities=5% Similarity=0.184 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~~l 371 (841)
+...+|-+.+.+...+++.+
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l 284 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLI 284 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555544
No 174
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.08 E-value=33 Score=36.13 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=22.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 324 KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 324 ~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
...+.+++.++++..++.-.+..+.-|...+...+.++++|+.|+..++
T Consensus 74 e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 74 ESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444445555555555555544443
No 175
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.03 E-value=1.7e+02 Score=38.51 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=13.4
Q ss_pred HHHHHHHhCC--CCeeeeeeEEEcccccHHHHH
Q 003183 24 CKRLLEKVGL--EGYQIGKTKVFLRAGQMADLD 54 (841)
Q Consensus 24 ~~~iL~~~~~--~~yq~G~TKvF~rag~~a~Le 54 (841)
...+|...|+ +.| -|+-.|.+..+-
T Consensus 124 I~~l~~~~gi~~~~~------~iV~QG~V~~i~ 150 (1163)
T COG1196 124 IQDLLADSGIGKESY------SIVSQGKVEEII 150 (1163)
T ss_pred HHHHHHhcCCCCCCC------ceeecccHHHHH
Confidence 4445555543 455 356677775443
No 176
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.00 E-value=34 Score=31.80 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
..++.++..|+...+.+++++++|++++...
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566666666666665543
No 177
>PRK10698 phage shock protein PspA; Provisional
Probab=82.87 E-value=64 Score=33.60 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHH---------HHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES--KIVQ---------LKTAMHRLEEKVSDM 364 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~--~~~~---------L~~e~~~Le~~l~~l 364 (841)
..+..++.+.......++.|+..+..++.++.+++.....+..+...++. ++.. --...+++++++.++
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~ 178 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQM 178 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 35566666666666666777777777777777666666555555433322 2211 224566777888777
Q ss_pred HHHHHH
Q 003183 365 ETENQI 370 (841)
Q Consensus 365 e~E~~~ 370 (841)
+.+.+.
T Consensus 179 Ea~aea 184 (222)
T PRK10698 179 EAEAES 184 (222)
T ss_pred HHHHhH
Confidence 777665
No 178
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.83 E-value=1.3e+02 Score=36.60 Aligned_cols=29 Identities=14% Similarity=0.399 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 346 KIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
++.++..++.+....+..++.+...++++
T Consensus 793 qv~El~~~l~e~~~~l~~~q~e~~~~keq 821 (970)
T KOG0946|consen 793 QVIELLKNLSEESTRLQELQSELTQLKEQ 821 (970)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 33344444555566666677777766654
No 179
>PLN02939 transferase, transferring glycosyl groups
Probab=81.68 E-value=1.6e+02 Score=37.33 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=17.7
Q ss_pred HHHHHHhcCC-CCCCCCCCCCHHHHHHHHh
Q 003183 754 QLYRICTLYW-DDNYNTRSVSPNVISSMRI 782 (841)
Q Consensus 754 Qi~kil~~Y~-~d~~e~~~v~~~~i~~v~~ 782 (841)
.+++-...|- |.-|| |.+-.++..|..
T Consensus 852 ~IYAaADIFLmPSr~E--PfGLvqLEAMAy 879 (977)
T PLN02939 852 SIYAASDMFIIPSMFE--PCGLTQMIAMRY 879 (977)
T ss_pred HHHHhCCEEEECCCcc--CCcHHHHHHHHC
Confidence 4566666665 66665 577777887754
No 180
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=81.58 E-value=54 Score=35.59 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 217 KNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESK 267 (841)
Q Consensus 217 ~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~ 267 (841)
.+.||++.+.|++.++.+.......| .+.++|...+++.....+...
T Consensus 141 t~~LEKEReqL~QQiEFe~~e~kK~E----~~k~Kl~~qLeeEk~RHeqis 187 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIEFEIEEKKKAE----IAKDKLEMQLEEEKKRHEQIS 187 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 56688888889988887654322221 223455555555554444433
No 181
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=81.27 E-value=72 Score=33.09 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK--I---------VQLKTAMHRLEEKVSD 363 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~--~---------~~L~~e~~~Le~~l~~ 363 (841)
......++.+...++..+..++..+.+++.++.+++.....+..+...+... + ......++++++.+..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~ 177 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDE 177 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777766666555444333322 1 2233556667777666
Q ss_pred HHHHHHH
Q 003183 364 METENQI 370 (841)
Q Consensus 364 le~E~~~ 370 (841)
++.+.+.
T Consensus 178 ~ea~aea 184 (219)
T TIGR02977 178 LEAQAES 184 (219)
T ss_pred HHHHHHH
Confidence 6655443
No 182
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=81.25 E-value=1e+02 Score=37.01 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 211 GALQAAKNKLEKQVEELT 228 (841)
Q Consensus 211 ~~l~~~~~~le~kv~el~ 228 (841)
+.|-+...+|.+++.+++
T Consensus 135 e~lpeveael~qr~~al~ 152 (916)
T KOG0249|consen 135 ETLPEVEAELAQRNAALT 152 (916)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 334444444444444443
No 183
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.91 E-value=2e+02 Score=37.88 Aligned_cols=17 Identities=12% Similarity=-0.075 Sum_probs=7.8
Q ss_pred HHhhchHHHHHHHhhcc
Q 003183 692 YVKAGLAELELWCCQAK 708 (841)
Q Consensus 692 qIr~nls~Le~W~~~~~ 708 (841)
.+.-.+..++.=+..-|
T Consensus 946 ~~~~~i~~le~~i~~lg 962 (1163)
T COG1196 946 ELEREIERLEEEIEALG 962 (1163)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44444555544444433
No 184
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=80.72 E-value=1.3e+02 Score=35.67 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 212 ALQAAKNKLEKQVEELTWRLQLEKRM 237 (841)
Q Consensus 212 ~l~~~~~~le~kv~el~~~l~~e~~~ 237 (841)
.+++.+..++.++..++..+......
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~e 218 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNE 218 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 44555666666666665444444333
No 185
>PF13514 AAA_27: AAA domain
Probab=80.25 E-value=2e+02 Score=37.58 Aligned_cols=168 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 194 KVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKE 273 (841)
Q Consensus 194 ~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e 273 (841)
..+.++++.++.+-++...-......+...+.+++.+++ ....+...++.+...++.....+..- .+
T Consensus 153 n~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~-----------~l~~~~~~l~~~~~~ler~~~~~p~~--~~ 219 (1111)
T PF13514_consen 153 NQALKELKELERELREAEVRAAEYQELQQALEEAEEELE-----------ELRAELKELRAELRRLERLRRAWPLL--AE 219 (1111)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHH--HH
Q ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHH
Q 003183 274 IEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE-----ERLKQALEAESKIV 348 (841)
Q Consensus 274 ~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~-----~~~~~l~~~e~~~~ 348 (841)
...++..+..+......|.....++..+..+...++.++..+..++..++.++..+.-... .....+......+.
T Consensus 220 ~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~ 299 (1111)
T PF13514_consen 220 LQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYR 299 (1111)
T ss_pred HHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 349 QLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 349 ~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
.....+..++.++..++.+...+..+
T Consensus 300 ~~~~dl~~~~~e~~~~~~~~~~~~~~ 325 (1111)
T PF13514_consen 300 KARQDLPRLEAELAELEAELRALLAQ 325 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
No 186
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.12 E-value=1.2e+02 Score=35.13 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKK 318 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~ 318 (841)
.+.+|+.||-.|+..+..|+..
T Consensus 171 eYSELEEENIsLQKqVs~LR~s 192 (772)
T KOG0999|consen 171 EYSELEEENISLQKQVSNLRQS 192 (772)
T ss_pred HHHHHHHhcchHHHHHHHHhhh
Confidence 4455666666666666655544
No 187
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=80.08 E-value=0.55 Score=57.69 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 003183 23 ACKRLLEK 30 (841)
Q Consensus 23 ~~~~iL~~ 30 (841)
.|..++..
T Consensus 8 l~~~Lv~W 15 (713)
T PF05622_consen 8 LCDSLVTW 15 (713)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 188
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.07 E-value=1.2e+02 Score=34.96 Aligned_cols=6 Identities=0% Similarity=-0.102 Sum_probs=2.3
Q ss_pred hCCCCH
Q 003183 651 QNFVPP 656 (841)
Q Consensus 651 ~~~v~~ 656 (841)
.-++|+
T Consensus 510 R~~~de 515 (596)
T KOG4360|consen 510 RMISDE 515 (596)
T ss_pred hhcCch
Confidence 333443
No 189
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=79.87 E-value=68 Score=31.97 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 339 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 339 ~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
++.+.+..+..+..++...+.+..++...+..++.
T Consensus 99 ~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 99 ELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444445555554443
No 190
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.86 E-value=78 Score=33.14 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E 367 (841)
..+..+.+++..|++++.++..|
T Consensus 81 ~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 81 EKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555
No 191
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=79.74 E-value=2e+02 Score=37.33 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE 335 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~ 335 (841)
....+...+...+..+.....+..+++.+...++.+...
T Consensus 298 t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~ 336 (1294)
T KOG0962|consen 298 TDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSS 336 (1294)
T ss_pred chHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334455555555566666666666666665555544333
No 192
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.53 E-value=99 Score=33.65 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 246 TQENAKLQSALQEMQLQFKE 265 (841)
Q Consensus 246 ~~e~~~L~~~l~~l~~~l~~ 265 (841)
..|.++|+...+.|..++-.
T Consensus 98 q~e~~qL~~qnqkL~nqL~~ 117 (401)
T PF06785_consen 98 QQESEQLQSQNQKLKNQLFH 117 (401)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 34445555555555555433
No 193
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=79.50 E-value=1.3 Score=54.07 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=29.8
Q ss_pred CccchHHHHHhhccccC-----CChHHHHHHHHHHhCCC
Q 003183 1 MFFLLNNFLTVYGIIVS-----SDEVTACKRLLEKVGLE 34 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-----~d~~~~~~~iL~~~~~~ 34 (841)
+|++|.+|+.||++|++ .|++..|+.||+.++++
T Consensus 653 ~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~ 691 (717)
T cd01382 653 SRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLN 691 (717)
T ss_pred hhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCC
Confidence 58999999999999983 47899999999988754
No 194
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=78.67 E-value=1.1e+02 Score=33.62 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 342 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 342 ~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
...+-....+.+++.+...+.+|+.|+..++.
T Consensus 234 kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~ 265 (309)
T PF09728_consen 234 KSNEVFETFKKEMEKMSKKIKKLEKENQTWKS 265 (309)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556778888888888888888887765
No 195
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=78.53 E-value=1.6e+02 Score=35.32 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 003183 210 TGALQAAKNKLEK 222 (841)
Q Consensus 210 ~~~l~~~~~~le~ 222 (841)
+..|.+.-++|-+
T Consensus 455 I~~lm~EGEkLSK 467 (961)
T KOG4673|consen 455 INQLMAEGEKLSK 467 (961)
T ss_pred HHHHHHHHHHhHH
Confidence 3444444444444
No 196
>PLN03188 kinesin-12 family protein; Provisional
Probab=78.43 E-value=2.2e+02 Score=36.92 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKID---ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 358 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~---e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le 358 (841)
...-|.+||+.|+.++.+.-+.+. |+--++.|+++.....+++...++.+...+.++++.|+
T Consensus 1174 er~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klk 1238 (1320)
T PLN03188 1174 ERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLK 1238 (1320)
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666655544443332 33344444444443333333333433444444443333
No 197
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=78.23 E-value=1.5e+02 Score=34.84 Aligned_cols=12 Identities=17% Similarity=0.697 Sum_probs=5.9
Q ss_pred CCeeeeeeEEEcc
Q 003183 34 EGYQIGKTKVFLR 46 (841)
Q Consensus 34 ~~yq~G~TKvF~r 46 (841)
..|+ +.+.|.+.
T Consensus 37 p~Y~-a~a~lli~ 48 (498)
T TIGR03007 37 DRYE-ASARVYVD 48 (498)
T ss_pred cceE-EeEEEEEc
Confidence 3453 34555555
No 198
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=77.96 E-value=1.1e+02 Score=33.09 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA--------LEAESKIVQLKTAMHRLEEKVSDMET 366 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l--------~~~e~~~~~L~~e~~~Le~~l~~le~ 366 (841)
++++..++.+|--|.+++++..++...-++.+..+..........+ .-++++..+|-.+...|++.+-+.+.
T Consensus 220 eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEk 299 (305)
T PF14915_consen 220 EERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEK 299 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999998887766666666655553333332 23566667777888888888877777
Q ss_pred HHH
Q 003183 367 ENQ 369 (841)
Q Consensus 367 E~~ 369 (841)
|..
T Consensus 300 EKa 302 (305)
T PF14915_consen 300 EKA 302 (305)
T ss_pred Hhh
Confidence 653
No 199
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=77.53 E-value=1e+02 Score=32.72 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+..++..-++.+..++.++..|+.
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666665
No 200
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=77.47 E-value=0.74 Score=57.55 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKID 320 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~ 320 (841)
.+.....++..++..++.+++
T Consensus 289 ~l~~qlsk~~~El~~~k~K~e 309 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKYE 309 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444444443
No 201
>PRK11281 hypothetical protein; Provisional
Probab=77.33 E-value=2.1e+02 Score=37.15 Aligned_cols=22 Identities=14% Similarity=0.142 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+....|-+.+.+....++.+.+
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~ 306 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQ 306 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666655533
No 202
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=76.82 E-value=1.6e+02 Score=35.85 Aligned_cols=18 Identities=39% Similarity=0.246 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 249 NAKLQSALQEMQLQFKES 266 (841)
Q Consensus 249 ~~~L~~~l~~l~~~l~~~ 266 (841)
...|+.-.-.|+.++.+.
T Consensus 429 l~sLqSlN~~Lq~ql~es 446 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQES 446 (861)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 203
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.67 E-value=1.3e+02 Score=33.61 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKK 325 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~ 325 (841)
..+..|..|..+|+..+...+++..+.-.+
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~~~ek~~q 282 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKSYQEKLMQ 282 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777776666666655443333
No 204
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=76.63 E-value=1.9 Score=52.52 Aligned_cols=34 Identities=29% Similarity=0.667 Sum_probs=29.6
Q ss_pred CccchHHHHHhhccccC-------CChHHHHHHHHHHhCCC
Q 003183 1 MFFLLNNFLTVYGIIVS-------SDEVTACKRLLEKVGLE 34 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-------~d~~~~~~~iL~~~~~~ 34 (841)
+|.+|.+|+.||++|++ .|.++.|+.||..++++
T Consensus 611 ~r~~~~~F~~ry~~L~~~~~~~~~~~~k~~~~~iL~~~~~~ 651 (677)
T smart00242 611 YRLPFDEFLQRYRVLLPDTWPPWGGDAKEACEALLQSLGLD 651 (677)
T ss_pred ceecHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCC
Confidence 68999999999999993 35799999999988754
No 205
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.06 E-value=28 Score=35.20 Aligned_cols=77 Identities=30% Similarity=0.445 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETS------KISEERLKQALEAESKIVQLKTAMHRLE----EKVSDMET 366 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~------~~~~~~~~~l~~~e~~~~~L~~e~~~Le----~~l~~le~ 366 (841)
....+.....+|+.+++.++.++.+++.+++... .++..+..++.+++.++..|+.++..+. +.+.+++.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3334444444444444444444444444444332 2333344444555555555555544332 22444444
Q ss_pred HHHHHHH
Q 003183 367 ENQILRQ 373 (841)
Q Consensus 367 E~~~l~~ 373 (841)
+....+.
T Consensus 143 ~~~~~~~ 149 (188)
T PF03962_consen 143 EIKIAKE 149 (188)
T ss_pred HHHHHHH
Confidence 4444433
No 206
>PRK11281 hypothetical protein; Provisional
Probab=75.91 E-value=2.4e+02 Score=36.65 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKI 319 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~ 319 (841)
.....++.|..-++.+..-.+..+
T Consensus 192 ~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 192 SQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444443
No 207
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=75.70 E-value=94 Score=31.35 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.+..+.....++....+.....+..+..++.+.+..-......+..++..+++|...+....++...+..++...
T Consensus 124 nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 124 NLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666555555555566667777777777777777766676666653
No 208
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.68 E-value=67 Score=35.03 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le 365 (841)
.|-.|+..|.-+++-|+.++++++..+.++.+...+..+++......+..|+.++..|+++|....
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666666666555544444444444555566666666666664433
No 209
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=75.12 E-value=1.4e+02 Score=33.19 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=21.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 323 EKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 323 e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+.++++++....+....+...+..+.+++.++..|+.+.+....+...+
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l 268 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQEL 268 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444333
No 210
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.03 E-value=1.9e+02 Score=34.59 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDE-------TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e-------~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
......+..+...+...+..+...+.+ +.....++.+...+...+..+....+..|...-...++++.+++..
T Consensus 343 ~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~ 422 (560)
T PF06160_consen 343 LEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQK 422 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655543 3333333333333333333334444455555555555566666666
Q ss_pred HHHHHH
Q 003183 368 NQILRQ 373 (841)
Q Consensus 368 ~~~l~~ 373 (841)
+...+.
T Consensus 423 l~~ikR 428 (560)
T PF06160_consen 423 LREIKR 428 (560)
T ss_pred HHHHHH
Confidence 655433
No 211
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.01 E-value=41 Score=35.62 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLK 351 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~ 351 (841)
+.+.+..+...+..++..+..+++.++..+..+++......+++.+++.++.++.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444444444444433333333333333333333
No 212
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=74.42 E-value=1.9e+02 Score=34.31 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++..|+.++.....+++.++.
T Consensus 317 ~qI~~le~~l~~~~~~leel~~ 338 (629)
T KOG0963|consen 317 AQISALEKELKAKISELEELKE 338 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.37 E-value=1.2e+02 Score=34.39 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLE 358 (841)
Q Consensus 344 e~~~~~L~~e~~~Le 358 (841)
+.++.+|++++.+|-
T Consensus 434 d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 434 DEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHhHh
Confidence 344555555544443
No 214
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.29 E-value=1.6e+02 Score=33.29 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 003183 361 VSDMETENQIL 371 (841)
Q Consensus 361 l~~le~E~~~l 371 (841)
+..+..++..+
T Consensus 376 ieelrkelehl 386 (502)
T KOG0982|consen 376 IEELRKELEHL 386 (502)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 215
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=74.28 E-value=3.1e+02 Score=36.67 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=12.1
Q ss_pred CCChHHHHHHHHHHhCC
Q 003183 17 SSDEVTACKRLLEKVGL 33 (841)
Q Consensus 17 ~~d~~~~~~~iL~~~~~ 33 (841)
+.+.+...+.-|..+|+
T Consensus 615 ~~~~ra~IEaAL~~~GL 631 (1353)
T TIGR02680 615 PADVRAGLEAALEAAGL 631 (1353)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 44567778888888765
No 216
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.06 E-value=25 Score=42.04 Aligned_cols=60 Identities=27% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhh-hhhHHHHHHHHHHHHHH
Q 003183 60 VLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMR-REASCLRIQRDLRMYLA 125 (841)
Q Consensus 60 ~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r-~~~Aa~~IQ~~~R~~~~ 125 (841)
+..+||+.||+.+|||++|++|. +.||.-|+..........-. -++.|..+=...|++..
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~------~~I~~e~d~~f~~d~~d~~~~~erv~~~~l~var~ll~ 88 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQ------IEIQEEFDNLFSCDSVDLTKVLERVARPFLPVARSLLV 88 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhcCCcchHHHHHHHhhhHHHHHHHHHH
Confidence 44578888888888888888873 56676666655433222111 12344444444454443
No 217
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.00 E-value=1.1e+02 Score=31.33 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL 337 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~ 337 (841)
.+......++.++.+++-..+.++.+...++.+++++.
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555555544444443
No 218
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.87 E-value=18 Score=35.86 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.+....+..+...|+.++.+++..+..++.++..+... -...+|...+..|+.++..+++.+..++.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~------------~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSE------------PTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666665555544444333221 12234555555566666666666666554
No 219
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.44 E-value=2.1e+02 Score=34.41 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=17.0
Q ss_pred HHHhccCCCCCHHHH-------HHHHhcCCCCCCC
Q 003183 741 EITNDLCPILSVQQL-------YRICTLYWDDNYN 768 (841)
Q Consensus 741 ~i~~~~C~~Ls~~Qi-------~kil~~Y~~d~~e 768 (841)
+.+ +.|.+|-.-+| ++|-+.|.+.++.
T Consensus 629 eFr-~ac~sL~Gykid~~~~s~~ritS~ya~~~~~ 662 (716)
T KOG4593|consen 629 EFR-DACYSLLGYKIDFTLESRYRLTSGYAEEPDD 662 (716)
T ss_pred HHH-HHHHhhhhhhhhcccccceeeeeeccCCCch
Confidence 344 67777777777 4566677764443
No 220
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=73.41 E-value=1.7e+02 Score=33.36 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 003183 215 AAKNKLEKQVEELT 228 (841)
Q Consensus 215 ~~~~~le~kv~el~ 228 (841)
....+-+.+|.+|+
T Consensus 324 ~tn~kQq~~IqdLq 337 (527)
T PF15066_consen 324 HTNRKQQNRIQDLQ 337 (527)
T ss_pred hhhHHHHHHHHHhh
Confidence 33333344444443
No 221
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.25 E-value=50 Score=31.09 Aligned_cols=59 Identities=14% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 305 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 363 (841)
Q Consensus 305 ~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~ 363 (841)
+++|.+.++.+-.++++..+-....+.+..++...+......+..++.-+..|+.+|..
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333333333333333333333333444444444444433
No 222
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=73.04 E-value=1e+02 Score=31.20 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 211 GALQAAKNKLEKQVEELTWRLQLE 234 (841)
Q Consensus 211 ~~l~~~~~~le~kv~el~~~l~~e 234 (841)
..+++....++.++.+++.+++..
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555543
No 223
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.93 E-value=21 Score=35.35 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEK 324 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~ 324 (841)
+.+|..+...++.++..++.++..+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555555443333
No 224
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=72.63 E-value=1.7e+02 Score=33.47 Aligned_cols=27 Identities=15% Similarity=0.038 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 153 RFRRQTRASILIQSHCRKYLARLHYMK 179 (841)
Q Consensus 153 ~~~~~~~aA~~IQ~~~R~~~~r~~~~~ 179 (841)
-+...+.||-++|-.|.-++..+-+++
T Consensus 359 Tk~~KnAAA~VLqeTW~i~K~trl~~k 385 (489)
T KOG3684|consen 359 TKEHKNAAANVLQETWLIYKHTKLVSK 385 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 344567889999999998887766543
No 225
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.53 E-value=2.5e+02 Score=34.73 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 244 AKTQENAKLQSALQEMQLQFKESKEK 269 (841)
Q Consensus 244 ~~~~e~~~L~~~l~~l~~~l~~~~~~ 269 (841)
+..+|.+.+..++..+...+++.+.+
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554443
No 226
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=72.53 E-value=2.5e+02 Score=34.82 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE--AESKIV------QLKTAMHRLEEKVSDMET 366 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~--~e~~~~------~L~~e~~~Le~~l~~le~ 366 (841)
...+.+|...+...+.++..|..+++..++.+..++-+...+.+++.- .|..+. .-+++++.. .+|.+|+.
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~v-kkiakLEa 197 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESV-KKIAKLEA 197 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 346677888888889999999999998888888888777776666532 121111 122333333 36899999
Q ss_pred HHHHHHH
Q 003183 367 ENQILRQ 373 (841)
Q Consensus 367 E~~~l~~ 373 (841)
|=++|+-
T Consensus 198 EC~rLr~ 204 (769)
T PF05911_consen 198 ECQRLRA 204 (769)
T ss_pred HHHHHHH
Confidence 9998865
No 227
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=72.35 E-value=1.1e+02 Score=34.27 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=6.4
Q ss_pred hHHHhhHHHHHHH
Q 003183 503 AYWLSNTSTLLFL 515 (841)
Q Consensus 503 ~fWLsN~~~Ll~~ 515 (841)
-.|=-|..+++|-
T Consensus 244 r~Wnvd~~r~~~T 256 (459)
T KOG0288|consen 244 RLWNVDSLRLRHT 256 (459)
T ss_pred eeeeccchhhhhh
Confidence 3455555555543
No 228
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.05 E-value=2e+02 Score=33.55 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
+.++..+.+++..|.+++.+..++.+.++
T Consensus 486 E~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 486 EEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566777777777777777777766
No 229
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.91 E-value=3.7e+02 Score=36.47 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 212 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAK 278 (841)
Q Consensus 212 ~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~ 278 (841)
.|......|..+...|+..+..-+-....+++...+....++.++.+|...+..+...+..+....+
T Consensus 763 rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r 829 (1822)
T KOG4674|consen 763 RLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLR 829 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666555554443333333333334444445555555555555555555444444433
No 230
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.31 E-value=2.5e+02 Score=34.28 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 335 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 335 ~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
++..++..++.++..++.++..++.++..++.+...++.
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555555555444
No 231
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=70.49 E-value=1.3e+02 Score=35.62 Aligned_cols=73 Identities=32% Similarity=0.381 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL--------KQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~--------~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
|-.|..+|+-.+..++++-.|.|++....+...+++. .+-...+.+...-+.++..|+++++..+.|...+.
T Consensus 179 LmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~ 258 (861)
T KOG1899|consen 179 LMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLL 258 (861)
T ss_pred HHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHH
Confidence 3344445555555555444444444444333333322 11111122222334567777777777777766654
Q ss_pred H
Q 003183 373 Q 373 (841)
Q Consensus 373 ~ 373 (841)
.
T Consensus 259 ~ 259 (861)
T KOG1899|consen 259 R 259 (861)
T ss_pred H
Confidence 3
No 232
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=70.28 E-value=48 Score=30.03 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
-+.+-++-.+...+..++++++.+...+.+.+....... ....++..+...+++++..++.++..++.+...+
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777777666666666554432 1112233344555666666666666666665543
No 233
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=69.25 E-value=28 Score=41.64 Aligned_cols=138 Identities=20% Similarity=0.060 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH-
Q 003183 65 ASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGM- 143 (841)
Q Consensus 65 a~~IQ~~~R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~- 143 (841)
-..||+.++.++.++.-+..+=.++.+|+.|+|+.-+.+.......+--..||.+|+-...-+..-.-...+...|-..
T Consensus 531 Q~~~~k~~~~f~~~~~~R~~~I~i~~~~a~~~~~~w~~~~~~~~~~K~~~~iq~~~~D~~~~n~iS~~~aN~~~~~~~~~ 610 (1023)
T KOG0165|consen 531 QSVIQKAVRHFLLRKKQRKFTIGIIKIQALWRGYSWRKKNDCTKIKKIRLSLQVVNRDIREENKLSKRTANALHYLLTYK 610 (1023)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcccccHHHHHHHHHHHHHhhcccccCcccccceeeecccc
Confidence 4567777777776654444444455566666665544333322222222445666665443333211111222222111
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 144 RGM--AARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKL 203 (841)
Q Consensus 144 Rg~--~aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a~~~iQ~~~R~~~aRr~l~~l 203 (841)
|-. ..+..+ -..-..++..+|.+.++-.+++.++-...+...+|+.++.++-+...+.+
T Consensus 611 R~~~~~e~~~~-l~~~~~~~~~~~~n~~~~~a~sie~~~~~~~~~Lr~~~~~~~i~~~Iqv~ 671 (1023)
T KOG0165|consen 611 RLSAILEALKH-LEVVTRLSPLCCENMAQSGAISIEKIFVLIRSCLRSIPCMEVIRYAIQVL 671 (1023)
T ss_pred chhhhhhhHHH-hhHHHHhhHHHhhhhhhhchhhHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 100 111111 12345678899999999999998888888888888888888877665543
No 234
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.25 E-value=90 Score=28.35 Aligned_cols=31 Identities=26% Similarity=0.526 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKFEE 328 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e 328 (841)
+..|..++......+.+|+.++.++...++.
T Consensus 46 l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 46 LQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444444
No 235
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=68.93 E-value=2e+02 Score=32.26 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHh-CCC-CeeeeeeEEEcccc--cHHHHHHHHHH
Q 003183 19 DEVTACKRLLEKV-GLE-GYQIGKTKVFLRAG--QMADLDARRTE 59 (841)
Q Consensus 19 d~~~~~~~iL~~~-~~~-~yq~G~TKvF~rag--~~a~Le~~R~~ 59 (841)
|+...|.+||..+ ..+ .-.|+-+|+=--+| ++..|+.+-+.
T Consensus 68 DPn~~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad~ 112 (359)
T PF10498_consen 68 DPNATISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLADE 112 (359)
T ss_pred CHHHHHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHHH
Confidence 6777788887766 221 23333344333333 23455554443
No 236
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.71 E-value=1.4e+02 Score=30.38 Aligned_cols=27 Identities=44% Similarity=0.625 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003183 305 NEKLKTLVSSLEKKIDETEKKFEETSK 331 (841)
Q Consensus 305 ~~~L~~~l~~l~~~~~e~e~~~~e~~~ 331 (841)
..+|...+..++..+.+.+.++..+++
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555544
No 237
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.19 E-value=2.4e+02 Score=32.90 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHhhhhh
Q 003183 86 RSAIHIQAACRGQLAR 101 (841)
Q Consensus 86 ~aai~IQ~~~Rg~laR 101 (841)
...-.|-.+|---+.+
T Consensus 152 ssMnsIKTFwSpELKk 167 (654)
T KOG4809|consen 152 SSMNSIKTFWSPELKK 167 (654)
T ss_pred CcccccccccchhhcC
Confidence 4455666666555544
No 238
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.41 E-value=1.8 Score=53.31 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 003183 249 NAKLQSALQEMQLQ 262 (841)
Q Consensus 249 ~~~L~~~l~~l~~~ 262 (841)
...|+++++.++..
T Consensus 293 a~~LrDElD~lR~~ 306 (713)
T PF05622_consen 293 ARALRDELDELREK 306 (713)
T ss_dssp --------------
T ss_pred HHHHhhhHHHHHHH
Confidence 34444444444433
No 239
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=66.52 E-value=1.7e+02 Score=31.28 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDE 321 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e 321 (841)
+.+..+|.+.|++-++.++..+.+
T Consensus 119 LKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhch
Confidence 344556666666666666655544
No 240
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=66.29 E-value=23 Score=40.68 Aligned_cols=19 Identities=5% Similarity=-0.074 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHhcCCCCC
Q 003183 748 PILSVQQLYRICTLYWDDN 766 (841)
Q Consensus 748 ~~Ls~~Qi~kil~~Y~~d~ 766 (841)
+.+||.++.+=+....+.+
T Consensus 444 ~~~~~d~~~~~~~~l~~~~ 462 (475)
T PRK13729 444 NGFNTDQMLKQLGNLNPGQ 462 (475)
T ss_pred CCCCHHHHHHHHhcCCccc
Confidence 4455555555555554433
No 241
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.18 E-value=3.7e+02 Score=34.25 Aligned_cols=15 Identities=7% Similarity=0.355 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 003183 254 SALQEMQLQFKESKE 268 (841)
Q Consensus 254 ~~l~~l~~~l~~~~~ 268 (841)
..+++++.+++....
T Consensus 448 ~~ieele~el~~~~~ 462 (1041)
T KOG0243|consen 448 EQIEELEEELENLEK 462 (1041)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 242
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.96 E-value=18 Score=43.18 Aligned_cols=20 Identities=55% Similarity=0.657 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 003183 110 EASCLRIQRDLRMYLAKKAY 129 (841)
Q Consensus 110 ~~Aa~~IQ~~~R~~~~r~~~ 129 (841)
++||+.||++||+|++|++|
T Consensus 30 ~~aa~~iq~~lrsyl~Rkk~ 49 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVRKKA 49 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 243
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.95 E-value=2.7e+02 Score=32.57 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
.++++.-.+++..|+..++.++..+.+.+..+-.++..-..+.........++..+.--+++-++++.+++..+....
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667778888888888888876665555555555444444444444455555555556666666666666665543
No 244
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.68 E-value=65 Score=34.11 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 336 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 336 ~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
...+..++|+++..+.+++..|+.++++|+.+|.+|-.
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666677777777777766644
No 245
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=65.66 E-value=76 Score=32.20 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le 365 (841)
..+..++.....+++++.+.+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 246
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=65.54 E-value=2e+02 Score=30.87 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSD 363 (841)
Q Consensus 352 ~e~~~Le~~l~~ 363 (841)
++.+.+++++++
T Consensus 225 dEyEklE~EL~~ 236 (267)
T PF10234_consen 225 DEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 247
>PF15456 Uds1: Up-regulated During Septation
Probab=64.94 E-value=1.2e+02 Score=28.57 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 294 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL-----------KQALEAESKIVQLKTAMHRLEEKVS 362 (841)
Q Consensus 294 ~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~-----------~~l~~~e~~~~~L~~e~~~Le~~l~ 362 (841)
..+++++|.+|...|...++.++.++. ++.++.++-.....+- ....+.++........++++..++.
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELW 98 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 466888999999999999999998887 5555554433222220 1123334444444555555555555
Q ss_pred HHHHHHHHHHH
Q 003183 363 DMETENQILRQ 373 (841)
Q Consensus 363 ~le~E~~~l~~ 373 (841)
+++......++
T Consensus 99 ~le~R~~~~~~ 109 (124)
T PF15456_consen 99 KLENRLAEVRQ 109 (124)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 248
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=64.83 E-value=1.2e+02 Score=28.16 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
...+..+..|..++..|...+++++..+.....
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777766665543
No 249
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=64.49 E-value=2.2 Score=52.62 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 249 NAKLQSALQEMQLQFKESKE 268 (841)
Q Consensus 249 ~~~L~~~l~~l~~~l~~~~~ 268 (841)
...++-++..|+.++..|..
T Consensus 307 l~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 307 LAELQLENEKLEDELNSWES 326 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555543
No 250
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.25 E-value=3.5e+02 Score=33.28 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDE 321 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e 321 (841)
.++.+.-|+..|+.+.+-|...+++
T Consensus 122 efE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544444
No 251
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=63.83 E-value=36 Score=29.35 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 334 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 334 ~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+++..+...++..+..|-..++..+++..+|+.||+.|++
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777777777777777888888887776
No 252
>PF15294 Leu_zip: Leucine zipper
Probab=63.79 E-value=2.1e+02 Score=30.71 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 209 ETGALQAAKNKLEKQVEELT 228 (841)
Q Consensus 209 ~~~~l~~~~~~le~kv~el~ 228 (841)
++..|++.+.+|.+++..++
T Consensus 133 Ei~rLq~EN~kLk~rl~~le 152 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLE 152 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 253
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.79 E-value=1.2e+02 Score=30.69 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
...++.+++...+.++.+....+
T Consensus 157 ~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 157 KDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554443
No 254
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=63.31 E-value=58 Score=32.96 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003183 357 LEEKVSDMETENQIL 371 (841)
Q Consensus 357 Le~~l~~le~E~~~l 371 (841)
++.++++.+.|.+.+
T Consensus 166 lk~el~~~~~~~~~L 180 (192)
T PF05529_consen 166 LKKELEKKEKEIEAL 180 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 255
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.18 E-value=8.9 Score=46.67 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 154 FRRQTRASILIQSHCRKYLARLHYMKLKKA 183 (841)
Q Consensus 154 ~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a 183 (841)
..++.++|+++|++|||+++|++.+...++
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~ 54 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQKLLFRE 54 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777766655443
No 256
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.02 E-value=3.7e+02 Score=33.13 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 343 AESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 343 ~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.+.++..+++++......+..+.++...+
T Consensus 853 ieq~ls~l~~~~k~~~nli~~ltEk~~sl 881 (970)
T KOG0946|consen 853 IEQKLSNLQEKIKFGNNLIKELTEKISSL 881 (970)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Confidence 33444444444444444444444444333
No 257
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=62.42 E-value=66 Score=37.34 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
.++.|-.||..|-...+.|.--..++-.+..++.-+++.+..++...+.....|++.+.+|+++|.+++.|....+++
T Consensus 302 EVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 302 EVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667777766666666665556777777777777777766666655555567777777777777777777766554
No 258
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.39 E-value=2.8e+02 Score=31.54 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le 365 (841)
...++.+-++.....|.++|
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777
No 259
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=62.33 E-value=2.3e+02 Score=35.00 Aligned_cols=122 Identities=12% Similarity=0.143 Sum_probs=86.2
Q ss_pred CCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhc--cCCcCCcchhhHHhhchHHHHHHHhh
Q 003183 629 DSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLL--RRECCTFSNGEYVKAGLAELELWCCQ 706 (841)
Q Consensus 629 ~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~--r~~~cs~s~G~qIr~nls~Le~W~~~ 706 (841)
..++++...++.+|+.++..+..+-= .........-|+.-+|+.|+. .+--.|-.=|+++..=|....+++.+
T Consensus 574 ~~~T~ac~~vv~~L~~~~~~~~~~l~-----~~nl~~f~~elg~~l~~~l~~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~ 648 (710)
T PF07393_consen 574 QQPTPACQEVVEFLERHCSLLKGSLD-----GSNLDVFLQELGERLHRLLLKHLKKFTVSSTGGLQLIKDLNEYQDFIRS 648 (710)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHHHHHhCccCchhHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999886532 222333344456666666653 35566778999999999999999998
Q ss_pred cccccccCcHHHhHHHHHHHHHHhccccccccHHHHHhccC-CCCCHHHHHHHHhc
Q 003183 707 AKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLC-PILSVQQLYRICTL 761 (841)
Q Consensus 707 ~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~C-~~Ls~~Qi~kil~~ 761 (841)
-+ .......|+-|.+.++|+.++ ..+..+++.+.+ +.+++..|+..+..
T Consensus 649 ~~---~~~v~~~F~~L~~l~nl~~v~---~~~l~~~~~~~~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 649 WG---IPSVDEKFEALKELGNLFIVD---PENLKELCREGQLGRFSPEEIYEFIQR 698 (710)
T ss_pred cC---CchHHHHHHHHHHHHhheeec---HHHHHHHHhhccccCCCHHHHHHHHHH
Confidence 76 234568999999999999995 334555554443 35666666666654
No 260
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=62.27 E-value=2.3e+02 Score=30.60 Aligned_cols=29 Identities=38% Similarity=0.567 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 346 KIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
++...-..-+.+++.+..++.||.-|++|
T Consensus 208 kv~k~~~Kqes~eERL~QlqsEN~LLrQQ 236 (305)
T PF14915_consen 208 KVNKYIGKQESLEERLSQLQSENMLLRQQ 236 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456678899999999999999885
No 261
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=62.14 E-value=1.2e+02 Score=27.36 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 307 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 307 ~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+|-.++..|+....-+++..-+-+.....+..+++..+..+..+.++++.|.=..+.|......++.
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665566666666666666666666666666666666666666655
No 262
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=62.06 E-value=1.2e+02 Score=29.80 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 375 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~~ 375 (841)
+.++.+...+...+.++..|+.....+......-+..+.....++...+ +....+..+|..++..|+.++..+..+.
T Consensus 36 E~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~E---d~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 36 ELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELE---DQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 263
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=61.54 E-value=71 Score=28.08 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003183 214 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAK 245 (841)
Q Consensus 214 ~~~~~~le~kv~el~~~l~~e~~~~~~le~~~ 245 (841)
......||..|.+|+.+|+.|...+..++.+.
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al 38 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKAL 38 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556789999999999999988888877544
No 264
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=60.78 E-value=1.2e+02 Score=33.52 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 350 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L 350 (841)
+.++++++-++|++......++++++.+..........+..+++++....+..+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666666666655555555544444444444444444443
No 265
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=60.78 E-value=1e+02 Score=26.08 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKT 310 (841)
Q Consensus 297 ~~~~L~~e~~~L~~ 310 (841)
.++.|..|-.+|..
T Consensus 13 ~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 13 QIAQLMEEGEKLSK 26 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 266
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.21 E-value=2.4e+02 Score=30.11 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 209 ETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVA 277 (841)
Q Consensus 209 ~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~ 277 (841)
++..+.+....++++|..|...++.-..... ....++.+++.++..++.++.+.++.+....+-+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~----~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKID----ELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555444442221111 3456678888888888888888877655543333
No 267
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=60.05 E-value=3.7e+02 Score=32.18 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
+..+++++..+++++.++-.++...+
T Consensus 348 le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 268
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.01 E-value=92 Score=35.87 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=5.1
Q ss_pred chHHHHHHHhh
Q 003183 696 GLAELELWCCQ 706 (841)
Q Consensus 696 nls~Le~W~~~ 706 (841)
++..+-+|++.
T Consensus 423 G~~e~adW~~k 433 (472)
T TIGR03752 423 GVDEVADWVNK 433 (472)
T ss_pred chHHHHHHHHH
Confidence 34444455543
No 269
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=59.74 E-value=3.4e+02 Score=31.74 Aligned_cols=19 Identities=16% Similarity=0.136 Sum_probs=9.6
Q ss_pred cccccHHHHHHHHHHHHhh
Q 003183 45 LRAGQMADLDARRTEVLGR 63 (841)
Q Consensus 45 ~rag~~a~Le~~R~~~l~~ 63 (841)
|-|.++...+..+-+.+..
T Consensus 65 ~~ADi~~ig~~a~vdhI~n 83 (489)
T PF05262_consen 65 LDADIFIIGENARVDHINN 83 (489)
T ss_pred CCCcEEEEcCCCCccHHHH
Confidence 4455555555555444443
No 270
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=59.72 E-value=89 Score=28.45 Aligned_cols=69 Identities=28% Similarity=0.279 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 304 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 304 e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
...++.....++++++.+.+...-++.....++..++.++..+...-.. -.....++.+++.+++.-++
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~ 72 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQ 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666665555444333222111 23345555666666555444
No 271
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=59.33 E-value=1.9e+02 Score=28.53 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 244 AKTQENAKLQSALQEMQLQFKESKEK 269 (841)
Q Consensus 244 ~~~~e~~~L~~~l~~l~~~l~~~~~~ 269 (841)
..+.|...++.++++++.++.....+
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~e 49 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEE 49 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666554443
No 272
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.14 E-value=52 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.414 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+++|.+.+.+...+|.+|+..+..+..
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444433
No 273
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.04 E-value=1.6e+02 Score=30.60 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 213 LQAAKNKLEKQVEELT 228 (841)
Q Consensus 213 l~~~~~~le~kv~el~ 228 (841)
-|+..+++|..+.+|+
T Consensus 88 KKaRm~eme~~i~dL~ 103 (292)
T KOG4005|consen 88 KKARMEEMEYEIKDLT 103 (292)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556666666665
No 274
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=58.74 E-value=3.1e+02 Score=30.90 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEE 328 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e 328 (841)
....+..-...|+.+++-++..+...++...+
T Consensus 247 ~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 247 EAAAEKLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777777777766665554443
No 275
>PRK04406 hypothetical protein; Provisional
Probab=58.69 E-value=77 Score=26.96 Aligned_cols=9 Identities=11% Similarity=0.449 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 003183 361 VSDMETENQ 369 (841)
Q Consensus 361 l~~le~E~~ 369 (841)
|..|+..+.
T Consensus 41 I~~L~~ql~ 49 (75)
T PRK04406 41 ITKMQDQMK 49 (75)
T ss_pred HHHHHHHHH
Confidence 333333333
No 276
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.48 E-value=1.1e+02 Score=30.47 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 330 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~ 330 (841)
.......-..+|+++++...++...+.+..+..+
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K 108 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRK 108 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 3333444444555555555555544444444433
No 277
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=57.69 E-value=16 Score=36.00 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 319 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 319 ~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~ 368 (841)
++++|.++..+.+...=++.++ ++.+.|+.++++|++++.+|+.|+
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444444333 223456677777777777777777
No 278
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.04 E-value=1.6e+02 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
+..+..+.+....++.++.+++..+.
T Consensus 80 e~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 80 ELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 279
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.03 E-value=73 Score=36.62 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 003183 635 WQSIIDSLNTLL 646 (841)
Q Consensus 635 ~~~il~~L~~~~ 646 (841)
++++-.-++..|
T Consensus 424 ~~e~adW~~kry 435 (472)
T TIGR03752 424 VDEVADWVNKRY 435 (472)
T ss_pred hHHHHHHHHHHh
Confidence 344444444444
No 280
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=56.68 E-value=3.4e+02 Score=30.74 Aligned_cols=12 Identities=0% Similarity=0.005 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 003183 65 ASIIQRKVRSYL 76 (841)
Q Consensus 65 a~~IQ~~~R~~~ 76 (841)
.|.+--.|..|.
T Consensus 117 ~ItVedLWeaW~ 128 (575)
T KOG4403|consen 117 HITVEDLWEAWK 128 (575)
T ss_pred ceeHHHHHHHHH
Confidence 334444444443
No 281
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=56.37 E-value=3.7 Score=50.65 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=6.2
Q ss_pred HHHHHHHhcCCC
Q 003183 753 QQLYRICTLYWD 764 (841)
Q Consensus 753 ~Qi~kil~~Y~~ 764 (841)
.--++|-++|.+
T Consensus 653 ~~~~rl~S~ya~ 664 (722)
T PF05557_consen 653 NGRVRLTSMYAE 664 (722)
T ss_dssp TTEEEEEETT-S
T ss_pred CCeEEEEecccC
Confidence 334566667743
No 282
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=55.73 E-value=75 Score=38.34 Aligned_cols=138 Identities=23% Similarity=0.245 Sum_probs=94.6
Q ss_pred CeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhhhhhhhhhhhhhhhHH
Q 003183 35 GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAA-CRGQLARTVYESMRREASC 113 (841)
Q Consensus 35 ~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQ~~-~Rg~laR~~~~~~r~~~Aa 113 (841)
.++.|-.++.+++|....|-+.--.+.......||+.++.+.....|.-...+.-.+|+. ++.+.+-+.+--- ..+.
T Consensus 248 y~~~~s~~~ii~~~~kEAL~k~~L~~i~~L~~~I~~A~~~~~~~~~~~I~~~~S~~~~~~d~~~~~sh~L~~GS--~~~~ 325 (1023)
T KOG0165|consen 248 YLQIRSSVIIIQARSKEALQKRKLQEIKNLTIKIQAAWRRYRAKKYLCIVKAASCKIQAWDYRCWRAHKLYLGS--LKAV 325 (1023)
T ss_pred HHHhccCceeeccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchHHHHHHHHHHHHHHHHHhhh--HHHH
Confidence 678899999999999999999888888899999999999999988887776666666653 3444333322211 2344
Q ss_pred HHHHHHHHHHHHHHH-HHhhchhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 114 LRIQRDLRMYLAKKA-YKDMCFSAVCIQTGMRGMAARNE----LRFRRQTRASILIQSHCRKYLAR 174 (841)
Q Consensus 114 ~~IQ~~~R~~~~r~~-~~~~r~aai~iQs~~Rg~~aR~~----~~~~~~~~aA~~IQ~~~R~~~~r 174 (841)
..||....+-..|.. +...+..++.+|.-|+.-+.-+. +-...+..++..+|+..|+|.-+
T Consensus 326 k~~~~~~~~~~~rq~r~~N~~~~ai~~q~~~~aGl~Lk~~~e~~~~~~~~~~~~R~~a~~r~~kI~ 391 (1023)
T KOG0165|consen 326 KIIQGCFYTKLERQTRFLNVRASAIIIQRKWRAGLPLKIAHEHFLMIKRHRAACRIQAHYRGYKIR 391 (1023)
T ss_pred HHHHhccceecchHhHHhhHHHHHHHHhHhhhcCcchHHHHHHHHHHHHHHHHhhhHhHHHHhccc
Confidence 455555555555543 44566778888877775433222 22345667778888888888755
No 283
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.51 E-value=1.9e+02 Score=29.88 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
+..+..++++++.++..++.++.|+..
T Consensus 92 eqeik~~q~elEvl~~n~Q~lkeE~dd 118 (246)
T KOG4657|consen 92 EQEIKATQSELEVLRRNLQLLKEEKDD 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555555555555555555553
No 284
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=55.47 E-value=57 Score=26.86 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 302 TSENEKLKTLVSSLEKKIDETEKKFE 327 (841)
Q Consensus 302 ~~e~~~L~~~l~~l~~~~~e~e~~~~ 327 (841)
..|..+|..++..++..+..++.++.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555555555555554444443
No 285
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=55.29 E-value=91 Score=30.53 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 333 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~ 333 (841)
..++.+...+..|+..+....+.+..++..+...+...
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~l 57 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAAL 57 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777666665555444
No 286
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=55.15 E-value=1.3e+02 Score=29.65 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
.+....|..++..|...+.++.+.....+.++.++.... .+.++++++.+|+..+....+.+..++
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L------------t~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL------------TTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666555555444433221 223444555555555555555444444
No 287
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.84 E-value=3.9e+02 Score=30.93 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~l 371 (841)
...++...+.++..++.++...
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a 310 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSL 310 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 288
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=54.44 E-value=73 Score=27.80 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 303 SENEKLKTLVSSLEKKIDETEKKF 326 (841)
Q Consensus 303 ~e~~~L~~~l~~l~~~~~e~e~~~ 326 (841)
.|.+.+++.+.+.+..++..+.++
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL 28 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRL 28 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444443
No 289
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.31 E-value=2.9e+02 Score=29.20 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 333 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~ 333 (841)
+.++..++.++..+++.++++.+++.++++++...
T Consensus 66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 66 ENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 290
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.28 E-value=1.2e+02 Score=27.66 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKV 361 (841)
Q Consensus 348 ~~L~~e~~~Le~~l 361 (841)
.+++.++..++.++
T Consensus 75 ~el~G~~~~l~~~l 88 (106)
T PF10805_consen 75 AELRGELKELSARL 88 (106)
T ss_pred HHHHhHHHHHHHHH
Confidence 33333333333333
No 291
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.25 E-value=1.2e+02 Score=33.41 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=17.1
Q ss_pred HHHHHHHhHhHHHHHhhhccCCcCCc
Q 003183 662 IFTQTFSYINVQLFNSLLLRRECCTF 687 (841)
Q Consensus 662 ~f~qlf~~in~~~fN~Ll~r~~~cs~ 687 (841)
++.|.|-+-|+.++-.+-...+|.-|
T Consensus 270 f~~~~~q~yn~~~l~~~~~~~~~~ew 295 (330)
T PF07851_consen 270 FFGQFFQLYNAYTLFELSYHPECREW 295 (330)
T ss_pred HHHHHHHHHHHHHHHHHHcCccchHH
Confidence 56778888888877776555543334
No 292
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=54.19 E-value=37 Score=41.24 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHHHHHHhhhhhhhhhhhhhh-----hHHHHHHHHH----
Q 003183 63 RSASIIQRKVRSYLSRKNYIML-------------RRSAIHIQAACRGQLARTVYESMRRE-----ASCLRIQRDL---- 120 (841)
Q Consensus 63 ~aa~~IQ~~~R~~~~Rk~~~~~-------------r~aai~IQ~~~Rg~laR~~~~~~r~~-----~Aa~~IQ~~~---- 120 (841)
+.++.||+.+| ++.+++--.. ...+-.||..++| |+.|..+.+. .....||.++
T Consensus 315 ~qvv~Le~~iR-l~iqKR~~~ir~li~n~~pqeedtk~~erlqs~i~g---r~KY~~l~~rLslf~p~f~LlQ~~iPlfS 390 (1054)
T COG5261 315 KQVVVLERDIR-LLIQKRGNKIRLLIQNRMPQEEDTKFAERLQSNING---RKKYFPLDRRLSLFGPLFFLLQSSIPLFS 390 (1054)
T ss_pred HHHHHHHHHHH-HHHHhhhhhhhhhhcccCchhhcchHHHHHHHHHhC---ccccchHHhhhhhcCCceehhhhccchhh
Confidence 45667777777 3333321111 1456677777777 4444333221 2334556322
Q ss_pred ----HHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 003183 121 ----RMYLAKKAYKDMCFSAVCIQTGMRGMAARN 150 (841)
Q Consensus 121 ----R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~ 150 (841)
+|...|... .....++++|...||+..|+
T Consensus 391 ~aic~grv~r~si-d~llni~klq~L~nG~~iRk 423 (1054)
T COG5261 391 IAICVGRVKRFSI-DALLNIVKLQILGNGYEIRK 423 (1054)
T ss_pred hHHhhcchheecH-HHHHHHHHHHHhhcceeeee
Confidence 222222211 13345677788888887773
No 293
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.07 E-value=3.9e+02 Score=30.59 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
...+.++-..+...+..|.+..+|-..|+++
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq 418 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQ 418 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777787777777777663
No 294
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=53.99 E-value=2e+02 Score=27.19 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~l 364 (841)
.+|..++.+.+..|..+
T Consensus 103 ~~L~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 103 NKLDKEIAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 295
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=53.96 E-value=1.7e+02 Score=26.41 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~ 368 (841)
+..+..++..++.++.+++.++
T Consensus 79 i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 79 IKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443333
No 296
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=53.95 E-value=3.7e+02 Score=30.38 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 003183 220 LEKQVEELTWRL 231 (841)
Q Consensus 220 le~kv~el~~~l 231 (841)
.+.+++++..++
T Consensus 11 ~dqr~~~~~~~l 22 (459)
T KOG0288|consen 11 NDQRLIDLNTEL 22 (459)
T ss_pred hhhHHHHHHHHH
Confidence 334444444333
No 297
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.92 E-value=2.9e+02 Score=29.19 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=4.6
Q ss_pred HHHHhhcccc
Q 003183 7 NFLTVYGIIV 16 (841)
Q Consensus 7 eF~~RY~~L~ 16 (841)
||..-|++.+
T Consensus 18 df~kaq~lyl 27 (445)
T KOG2891|consen 18 DFCKAQGLYL 27 (445)
T ss_pred hhhhhcceee
Confidence 4444444443
No 298
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=53.85 E-value=3.6e+02 Score=30.11 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~~l 371 (841)
.++.=|+.+|+.|++|++..
T Consensus 519 sEiQYLKqEissLkDELQta 538 (593)
T KOG4807|consen 519 SEIQYLKQEISSLKDELQTA 538 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666665543
No 299
>smart00338 BRLZ basic region leucin zipper.
Probab=53.76 E-value=1.2e+02 Score=24.68 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 339 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 339 ~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
.+..++.++..|..+...|..++..|+.++..++++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777653
No 300
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.65 E-value=3.7e+02 Score=30.26 Aligned_cols=136 Identities=18% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhc------ccccccc
Q 003183 235 KRMRVDMEEAKTQENAKLQS---ALQEMQLQFKESKEKLMK--------------EIEVAKKEAEKV------PVVQEVP 291 (841)
Q Consensus 235 ~~~~~~le~~~~~e~~~L~~---~l~~l~~~l~~~~~~l~~--------------e~~~~~~~~ee~------~~~~e~~ 291 (841)
++.-...++....+++.++. ++..|..++.++.++++. ...+.++..++- ......+
T Consensus 16 k~~~~a~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~ 95 (542)
T KOG0993|consen 16 KELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNP 95 (542)
T ss_pred hhcccchhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCc
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 292 VIDHAVVEELTSENEKLKTLVSSLEKKID-------------ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 358 (841)
Q Consensus 292 ~~~~~~~~~L~~e~~~L~~~l~~l~~~~~-------------e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le 358 (841)
..+-.-...++.+...+.+.-+.++.++. .+++.........+++..-..-.+..|.+++..+.+.+
T Consensus 96 ~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE 175 (542)
T KOG0993|consen 96 TYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAE 175 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHHH
Q 003183 359 EKVSDMETENQI 370 (841)
Q Consensus 359 ~~l~~le~E~~~ 370 (841)
+.|..++.+.+.
T Consensus 176 ~~i~El~k~~~h 187 (542)
T KOG0993|consen 176 QRIDELSKAKHH 187 (542)
T ss_pred HHHHHHHhhhcc
No 301
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=53.54 E-value=49 Score=39.56 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003183 51 ADLDARRTEVLGRSASIIQRKVRSYLS 77 (841)
Q Consensus 51 a~Le~~R~~~l~~aa~~IQ~~~R~~~~ 77 (841)
.+-|+-|+......+-+||..-+.|+.
T Consensus 517 G~~drNrD~L~~DlieLm~ts~~~Fl~ 543 (1106)
T KOG0162|consen 517 GFCDRNRDVLFKDLIELMQTSENPFLK 543 (1106)
T ss_pred cccccchhHHHHHHHHHHhccchHHHH
Confidence 566788888888889999998888863
No 302
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=53.16 E-value=3.7e+02 Score=30.61 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~~l 371 (841)
.++..++.++.--+.....+
T Consensus 246 del~Sle~q~~~s~~qldkL 265 (447)
T KOG2751|consen 246 DELDSLEAQIEYSQAQLDKL 265 (447)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333
No 303
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=53.16 E-value=1.7e+02 Score=26.33 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+..+..+...+..++.++..++++...++.
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666555544
No 304
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=53.03 E-value=2.9e+02 Score=28.84 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~ 369 (841)
..++++++.+...+....
T Consensus 166 ~~fer~e~kiee~ea~a~ 183 (225)
T COG1842 166 AAFERMEEKIEEREARAE 183 (225)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554444
No 305
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=52.94 E-value=1.1e+02 Score=31.14 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 343 AESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 343 ~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
..+.++.+++++.-|+.-+...+.|++.|+
T Consensus 165 v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 165 VREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666777777777777777777665
No 306
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=52.50 E-value=4.4e+02 Score=30.75 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 307 KLKTLVSSLEKKIDETEKKFEETS 330 (841)
Q Consensus 307 ~L~~~l~~l~~~~~e~e~~~~e~~ 330 (841)
.++..+.-++++++..+++++++.
T Consensus 137 ~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 137 SLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444444544444444444443
No 307
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=52.40 E-value=1.9e+02 Score=26.44 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVS 362 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~ 362 (841)
+...+..+.+.+++....++.+-
T Consensus 85 ikr~e~~i~d~q~e~~k~R~~v~ 107 (120)
T KOG3478|consen 85 IKRLENQIRDSQEEFEKQREAVI 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333333
No 308
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.35 E-value=3.4e+02 Score=29.44 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKK 318 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~ 318 (841)
+.++...++....++..+
T Consensus 163 l~aei~~lk~~~~e~~ek 180 (294)
T COG1340 163 LKAEIDELKKKAREIHEK 180 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 309
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=52.27 E-value=5.3e+02 Score=31.62 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 003183 359 EKVSDMETENQILRQ 373 (841)
Q Consensus 359 ~~l~~le~E~~~l~~ 373 (841)
+...+|..++..|+.
T Consensus 300 ~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 300 EERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHhhc
Confidence 334444455444443
No 310
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.06 E-value=82 Score=31.83 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEET-SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~-~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
-.+-.+...+++.++++.++.+...+...+. +....+...++.+++.++...+.+++.|+.+.+.++.|
T Consensus 121 ~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 121 HSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555544433322222211 11222223333444444444555555555555555554
No 311
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=51.92 E-value=6.7e+02 Score=32.70 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKID 320 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~ 320 (841)
......++.|..-++.+++.++.+..
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555554443
No 312
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=51.60 E-value=5.5e+02 Score=31.61 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=4.8
Q ss_pred HHHHhhhcc
Q 003183 673 QLFNSLLLR 681 (841)
Q Consensus 673 ~~fN~Ll~r 681 (841)
.+||..+.+
T Consensus 1327 ~~~niVith 1335 (1424)
T KOG4572|consen 1327 GCANIVITH 1335 (1424)
T ss_pred ccceeEeeH
Confidence 345666554
No 313
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=50.81 E-value=1.7e+02 Score=26.46 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~ 369 (841)
+..+...+++++..++.+..
T Consensus 72 l~~e~~~lk~~i~~le~~~~ 91 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLK 91 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333333
No 314
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.78 E-value=4.6e+02 Score=30.55 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 356 RLEEKVSDMETENQILRQ 373 (841)
Q Consensus 356 ~Le~~l~~le~E~~~l~~ 373 (841)
.|.++|..|.+-+..+.+
T Consensus 169 ~L~~qi~~L~~~n~~i~~ 186 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQ 186 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 315
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=50.78 E-value=25 Score=28.09 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
++++-|++.+.+|++++..|+.||..+++.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778889999999999999999999883
No 316
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.59 E-value=1.8e+02 Score=25.80 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKF 326 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~ 326 (841)
+..+..+...+...+..+...+.+.+...
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~ 35 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTL 35 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333
No 317
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=50.40 E-value=5.3e+02 Score=31.06 Aligned_cols=13 Identities=8% Similarity=-0.110 Sum_probs=5.8
Q ss_pred cCCCcchhhhcCc
Q 003183 821 LDVKAAEELLENP 833 (841)
Q Consensus 821 ~~~~~p~~l~~~~ 833 (841)
.-+-+|++=...|
T Consensus 785 ~p~~lp~s~~~~~ 797 (811)
T KOG4364|consen 785 SPRCLPPSTKPQP 797 (811)
T ss_pred CcccCCCcCCCCc
Confidence 3344555444443
No 318
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=50.34 E-value=2.6e+02 Score=28.61 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
+...+..+.....+..-|++++..++.|+..++..
T Consensus 68 LE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~ 102 (202)
T PF06818_consen 68 LEVCENELQRKKNEAELLREKLGQLEAELAELREE 102 (202)
T ss_pred HHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHH
Confidence 33444455555566666777777777777777663
No 319
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=50.05 E-value=83 Score=27.48 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+.+++..+.+.+...++++..|++
T Consensus 39 ~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 39 RSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 44555666666666666666666655
No 320
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=49.90 E-value=5.4e+02 Score=31.10 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=3.9
Q ss_pred CeeeeeeE
Q 003183 35 GYQIGKTK 42 (841)
Q Consensus 35 ~yq~G~TK 42 (841)
+|+=|..=
T Consensus 60 ~~~egl~~ 67 (786)
T PF05483_consen 60 HYQEGLKD 67 (786)
T ss_pred hhhhcccc
Confidence 45555433
No 321
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=49.79 E-value=2.4e+02 Score=26.85 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 349 QLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 349 ~L~~e~~~Le~~l~~le~E~~ 369 (841)
.+...+..++..+..+....+
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~ 125 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIA 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 322
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=49.68 E-value=3.6e+02 Score=28.90 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 003183 248 ENAKLQSALQE 258 (841)
Q Consensus 248 e~~~L~~~l~~ 258 (841)
|+.+|+.++..
T Consensus 90 EI~eLksQL~R 100 (305)
T PF15290_consen 90 EIDELKSQLAR 100 (305)
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 323
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=49.55 E-value=4.6e+02 Score=30.10 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=9.0
Q ss_pred CCCeeeeeeEEEccc
Q 003183 33 LEGYQIGKTKVFLRA 47 (841)
Q Consensus 33 ~~~yq~G~TKvF~ra 47 (841)
++.|. +.+.|++..
T Consensus 36 ~p~Y~-a~a~l~v~~ 49 (444)
T TIGR03017 36 PKEYT-ATTSVVLDY 49 (444)
T ss_pred CceeE-EEEEEEEec
Confidence 35665 777777754
No 324
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.33 E-value=6.7e+02 Score=31.98 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHH
Q 003183 637 SIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQL 674 (841)
Q Consensus 637 ~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~ 674 (841)
..+..+..+-..+...+++..+...+..++....|..+
T Consensus 740 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 777 (908)
T COG0419 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEIL 777 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666555555555555555555543
No 325
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.33 E-value=5.8e+02 Score=31.26 Aligned_cols=12 Identities=25% Similarity=0.146 Sum_probs=5.7
Q ss_pred cchHHHHHHHHh
Q 003183 458 PVAAFTIYKCLL 469 (841)
Q Consensus 458 p~pA~il~~c~~ 469 (841)
|.-.-|+++++.
T Consensus 415 ~~~~Giipral~ 426 (670)
T KOG0239|consen 415 PEDPGIIPRALE 426 (670)
T ss_pred cccCCccHHHHH
Confidence 433445555554
No 326
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=49.30 E-value=3.1e+02 Score=32.67 Aligned_cols=146 Identities=10% Similarity=0.216 Sum_probs=93.4
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCcC-----CcchhhHHhhchHHHHHHHhhc
Q 003183 633 SHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECC-----TFSNGEYVKAGLAELELWCCQA 707 (841)
Q Consensus 633 ~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r~~~c-----s~s~G~qIr~nls~Le~W~~~~ 707 (841)
..++.|+..+..++.-++. +++|.+...++..+...+=..=+..|+.++--| .-.-+-+|+-.+..|.+-+...
T Consensus 397 ~~~~~I~~Ti~dY~~d~~~-~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~ 475 (566)
T PF06046_consen 397 EAVDTICATIEDYLQDFQH-YLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKL 475 (566)
T ss_dssp -HHHHHHHHHHHHHHHHCC-CS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999876665 788999999999999888888888888876555 4556789999999999998876
Q ss_pred ccccccCcHHHhHHHHHHHHHHhccccccc--cHHHHHhccCCCCCHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHhhhh
Q 003183 708 KEEYAGSSWDELKHIRQAVGFLVIHQKYRI--SYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMT 785 (841)
Q Consensus 708 ~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~--~~~~i~~~~C~~Ls~~Qi~kil~~Y~~d~~e~~~v~~~~i~~v~~~~~ 785 (841)
+ ........+..|...+.+|-+..++.. ...++. ..+|-++...|..||.. -+|.. ..--.+++..+.....
T Consensus 476 ~--~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~-~~ypD~~~~~v~alL~~--R~D~~-r~~~~~il~~~~~~~~ 549 (566)
T PF06046_consen 476 G--SKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLL-QKYPDISEEHVEALLAL--RGDLS-RSEVKEILEILREIIK 549 (566)
T ss_dssp T--HHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHH-CC-TT--SHHHHHHHCT---TT---HHHHHHHHHHHHHHHH
T ss_pred c--ccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHh--ccCCC-HHHHHHHHHHHHHHhh
Confidence 5 122333566666667777744433333 334555 78899999999999943 23333 2344455555554444
No 327
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.07 E-value=6.8e+02 Score=31.94 Aligned_cols=14 Identities=0% Similarity=0.211 Sum_probs=7.0
Q ss_pred CCHHHHHHHHhhhh
Q 003183 772 VSPNVISSMRILMT 785 (841)
Q Consensus 772 v~~~~i~~v~~~~~ 785 (841)
.+++-+..+...+.
T Consensus 854 LD~e~l~~l~~~l~ 867 (908)
T COG0419 854 LDEERLEKLAEILE 867 (908)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555544444
No 328
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=48.89 E-value=2e+02 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
...+.++..|.+.+..|.+-..+|+..
T Consensus 69 d~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 69 DQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555544
No 329
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.60 E-value=5.8e+02 Score=31.96 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=7.2
Q ss_pred cccccHHHHHHHHH
Q 003183 45 LRAGQMADLDARRT 58 (841)
Q Consensus 45 ~rag~~a~Le~~R~ 58 (841)
++.|.-..|..+|.
T Consensus 145 i~d~aS~eL~~iR~ 158 (782)
T PRK00409 145 VKDSASEKLRGIRR 158 (782)
T ss_pred ECCCCCHHHHHHHH
Confidence 45555555555553
No 330
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=48.52 E-value=2.5e+02 Score=26.82 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 346 KIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
...+....+..-+..|.+|..||+.++.=
T Consensus 69 ~~~~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 69 QLAQARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 34445555666677788888888888773
No 331
>PRK04406 hypothetical protein; Provisional
Probab=48.31 E-value=1.4e+02 Score=25.34 Aligned_cols=17 Identities=0% Similarity=0.169 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMET 366 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~ 366 (841)
.+.++..|..++..|..
T Consensus 37 Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 37 QQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 332
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.07 E-value=39 Score=41.45 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 173 ARLHYMKLKKAAITTQCAWRGKVARRELRKLKMA 206 (841)
Q Consensus 173 ~r~~~~~~~~a~~~iQ~~~R~~~aRr~l~~lk~~ 206 (841)
.|..-++..++++++|++|||+.+|+..+.+..+
T Consensus 21 kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~ 54 (1001)
T KOG0942|consen 21 KREEERKQEKNAVKVQSFWRGFRVRHNQKLLFRE 54 (1001)
T ss_pred hhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677899999999999999998877654
No 333
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.88 E-value=1.3e+02 Score=25.36 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~~ 370 (841)
..++.+..++.-|-+....
T Consensus 36 ~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 36 LVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333444444444433333
No 334
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.39 E-value=97 Score=25.81 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 351 KTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 351 ~~e~~~Le~~l~~le~E~~~ 370 (841)
+.++..|+.++..|...+..
T Consensus 31 q~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 31 QRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333
No 335
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.25 E-value=85 Score=25.01 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEK 317 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~ 317 (841)
++.+..+++..++.++.
T Consensus 5 lEn~~~~~~~~i~tvk~ 21 (55)
T PF05377_consen 5 LENELPRIESSINTVKK 21 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 336
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.12 E-value=3.2e+02 Score=27.64 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q 003183 137 VCIQTGMRGMAARN 150 (841)
Q Consensus 137 i~iQs~~Rg~~aR~ 150 (841)
++|.+.-||.+--+
T Consensus 75 VTi~C~ERGlLL~r 88 (189)
T PF10211_consen 75 VTIDCPERGLLLLR 88 (189)
T ss_pred HHhCcHHHhHHHHH
Confidence 56777778876443
No 337
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=47.00 E-value=20 Score=32.30 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKI 319 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~ 319 (841)
....++.++..++.++++|-..+
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasL 31 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554443
No 338
>PRK02119 hypothetical protein; Provisional
Probab=46.81 E-value=1.4e+02 Score=25.25 Aligned_cols=16 Identities=6% Similarity=0.266 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 351 KTAMHRLEEKVSDMET 366 (841)
Q Consensus 351 ~~e~~~Le~~l~~le~ 366 (841)
+.++..|+.++..|..
T Consensus 36 q~~id~L~~ql~~L~~ 51 (73)
T PRK02119 36 QFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 339
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=46.72 E-value=2.5e+02 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.+++++.+.|.-.+..|+.+-++++++.+.++.
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777778888777766
No 340
>PRK00106 hypothetical protein; Provisional
Probab=46.59 E-value=5.7e+02 Score=30.38 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccch
Q 003183 213 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPV 292 (841)
Q Consensus 213 l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~ 292 (841)
|-..+-+--+.-.+|+ -+..+...+.-+++++.....-......+.+....+...+.+.+....+...+..
T Consensus 21 ~~~~~~~~~~~~~~~~-~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEke-------- 91 (535)
T PRK00106 21 LISIKMKSAKEAAELT-LLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQE-------- 91 (535)
T ss_pred HHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 293 IDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 293 ~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~l 364 (841)
...+...+...-..|....+.|.++..+++++..++.....++..+..+++....++.+........+++.
T Consensus 92 -l~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~ 162 (535)
T PRK00106 92 -FKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERV 162 (535)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 341
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=46.24 E-value=74 Score=27.96 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
.++.+|-.++..++.+|.+|+..+..|..+
T Consensus 54 ~~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 54 KKAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777888888887777776553
No 342
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=46.00 E-value=2.7e+02 Score=26.44 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+..++..+..+...+..+.+++..+......+
T Consensus 103 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 103 KEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555554444
No 343
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.47 E-value=5.2e+02 Score=32.33 Aligned_cols=16 Identities=31% Similarity=0.462 Sum_probs=9.6
Q ss_pred EcccccHHHHHHHHHH
Q 003183 44 FLRAGQMADLDARRTE 59 (841)
Q Consensus 44 F~rag~~a~Le~~R~~ 59 (841)
+++.+.-..|..+|..
T Consensus 139 ~i~d~aS~~L~~ir~~ 154 (771)
T TIGR01069 139 KVKDGASEELDAIRES 154 (771)
T ss_pred EECCCcCHHHHHHHHH
Confidence 4556666666666654
No 344
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=45.20 E-value=3.3e+02 Score=30.33 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE-AESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~-~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.+..++..|..+.+.|+....++.++++++...+.+++.++-. --.-+.+-+..+.+|+..|..++.+....
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~~~ 213 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEKSP 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccccch
Confidence 3344444444444444444444444444444444444433211 11112223344445555555555444433
No 345
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.98 E-value=1.6e+02 Score=34.32 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
-+.++..|+..++.-+-..+.+++
T Consensus 126 ~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 126 KQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHh
Confidence 334444444444444444444444
No 346
>PRK09343 prefoldin subunit beta; Provisional
Probab=44.96 E-value=2.6e+02 Score=26.03 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+.-.+..+..+....+.+++++.+++..+..+-+
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555566666666666666666555443
No 347
>PHA03011 hypothetical protein; Provisional
Probab=44.86 E-value=1.8e+02 Score=25.98 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVS 362 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~ 362 (841)
+.+.-|+.++.+|++++.
T Consensus 99 d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 99 DEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444555555554443
No 348
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=44.80 E-value=85 Score=25.00 Aligned_cols=11 Identities=18% Similarity=0.287 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 003183 353 AMHRLEEKVSD 363 (841)
Q Consensus 353 e~~~Le~~l~~ 363 (841)
+++++.+.+++
T Consensus 22 en~~i~~~ve~ 32 (55)
T PF05377_consen 22 ENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 349
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.70 E-value=92 Score=35.93 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 316 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 359 (841)
Q Consensus 316 ~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~ 359 (841)
+.+.+++|++++.++.+.+.+..+..+.+.++++++.++..|+.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333323333333344433333333333
No 350
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=44.51 E-value=3.5e+02 Score=27.36 Aligned_cols=32 Identities=13% Similarity=0.246 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 343 AESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 343 ~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
...+...|..+......+|.+++..+..|+.+
T Consensus 152 ~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 152 ARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666677777666666554
No 351
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.27 E-value=1.2e+02 Score=34.81 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.+-++..+..++..++++|+.+..++.+++....+... +..++..+...+++++..+++++..++++...+
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666655555544222111 112233344556666666666666666666554
No 352
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.26 E-value=2.3e+02 Score=25.13 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le 365 (841)
+..+...+..++.++.+++
T Consensus 78 i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 78 IKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 353
>PLN02678 seryl-tRNA synthetase
Probab=44.23 E-value=1.3e+02 Score=34.91 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
++-++..+..++..++++++.+...+.+.+.......+ ...++.++...|++++..++.++..++++...+-
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~----~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKE----DATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666655555555543221111 1122233455566666667776666666666543
No 354
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.22 E-value=5.6e+02 Score=32.08 Aligned_cols=12 Identities=8% Similarity=0.562 Sum_probs=5.7
Q ss_pred EEcccccHHHHH
Q 003183 43 VFLRAGQMADLD 54 (841)
Q Consensus 43 vF~rag~~a~Le 54 (841)
+|+....+-.|.
T Consensus 222 ~y~ep~~~~~ln 233 (782)
T PRK00409 222 LYIEPQSVVELN 233 (782)
T ss_pred EEEEcHHHHHHH
Confidence 555555343443
No 355
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=44.22 E-value=1.4e+02 Score=29.98 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 311 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 311 ~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
+++++-..+++...+.+++...+.-+..++..+...++.|..++..+..+...+..|+..
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 356
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=44.19 E-value=3.5e+02 Score=29.59 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 305 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 305 ~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~ 368 (841)
|..|..+...|.=+++-++..+++++.....+..+..+....+..++.....|..++..|+.++
T Consensus 100 naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 100 NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333333322223333333344444444444443
No 357
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=43.95 E-value=2.6e+02 Score=31.14 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS-EERLKQALEAESKIVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~-~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le 365 (841)
....|..++++|+.+.+.+.+++++.-...++.+... .+-..-|.+...+|..|+..+..++..-....
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~~~~ 214 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEKSPK 214 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccccchh
Confidence 4556666777777777777666666555555554333 22333355666677777777766666544443
No 358
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=43.94 E-value=3.8e+02 Score=27.56 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 250 AKLQSALQEMQLQFKESKE 268 (841)
Q Consensus 250 ~~L~~~l~~l~~~l~~~~~ 268 (841)
..++.++++.+..+..+..
T Consensus 54 ~~le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 54 KRLERKLDEAEEEAEKWEK 72 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554443
No 359
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.38 E-value=2.4e+02 Score=25.14 Aligned_cols=79 Identities=28% Similarity=0.302 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 294 DHAVVEELTSENEKLKTLVSSLEKKIDETEK---------KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 294 ~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~---------~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~l 364 (841)
.....+.+..+..+++.+++.|+..+..+.. .+..++...+.....+.. .+..-+..++..|+.+...+
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~--rK~~~l~~~i~~l~~ke~~l 87 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS--RKDQLLMEQIEELKKKEREL 87 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777766655432221 111222222222222221 22334667788888888888
Q ss_pred HHHHHHHHHh
Q 003183 365 ETENQILRQQ 374 (841)
Q Consensus 365 e~E~~~l~~~ 374 (841)
+.+|..|+++
T Consensus 88 ~~en~~L~~~ 97 (100)
T PF01486_consen 88 EEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHH
Confidence 8888888763
No 360
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.12 E-value=1.8e+02 Score=23.59 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 342 EAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 342 ~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
.++..+..|..+...|...+..|+.++..|.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 361
>PRK00295 hypothetical protein; Provisional
Probab=43.03 E-value=1.8e+02 Score=24.15 Aligned_cols=21 Identities=5% Similarity=0.154 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~ 370 (841)
|.+.+.+...+|..|+..+..
T Consensus 24 Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 24 LNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 362
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=42.88 E-value=51 Score=36.08 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
..+......++..+.++...+..+...+.........+...+...+..+..|+..+..+.-.|..|+..++.++..
T Consensus 80 ~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 80 NSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 3344444444444555555555555555555555555555566667777888888888888888888888888763
No 363
>PRK02793 phi X174 lysis protein; Provisional
Probab=42.60 E-value=1.6e+02 Score=24.79 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 351 KTAMHRLEEKVSDMETE 367 (841)
Q Consensus 351 ~~e~~~Le~~l~~le~E 367 (841)
+.++..|..++..|...
T Consensus 35 q~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 35 EMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 364
>PF14992 TMCO5: TMCO5 family
Probab=42.55 E-value=2.9e+02 Score=29.69 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 242 EEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDE 321 (841)
Q Consensus 242 e~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e 321 (841)
+.....++..+-..+++-+..+..+..++......+....++-....+ .+....+|+.+.++|+..-+.+-..+.+
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~----~e~~l~~le~e~~~LE~~ne~l~~~~~e 88 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEE----RETDLQELELETAKLEKENEHLSKSVQE 88 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhc----hHHHHHHHHhhhHHHhhhhHhhhhhhhh
Q ss_pred HHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 322 TEKKFEE----TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 322 ~e~~~~e----~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+.++..+ +..+...+...+...+..++.+..++..++.++.+++++.....+
T Consensus 89 lq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~ 144 (280)
T PF14992_consen 89 LQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQ 144 (280)
T ss_pred hhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 365
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.43 E-value=1.5e+02 Score=34.37 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS------EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~------~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
++..+...|+.++.++..++++++..+..+++.. .+..............+.+++.++++++..+++++...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444455555555555444444444433311 11222233344445556666666666666666666554
No 366
>PHA02414 hypothetical protein
Probab=42.23 E-value=2.3e+02 Score=25.15 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
++-.++.-++.+|++.++.|...++
T Consensus 57 EKqshi~yQi~~Lee~i~aL~~~n~ 81 (111)
T PHA02414 57 EKQSHIYYQIERLEEKISALAESNK 81 (111)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhccc
Confidence 3444555666677776666655544
No 367
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.09 E-value=1.6e+02 Score=27.01 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
++..|+..+..|-++-..|+-||+.|+.
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445554444
No 368
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.97 E-value=6.7e+02 Score=29.88 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCC---Ce-------eeeeeEEEccccc
Q 003183 21 VTACKRLLEKVGLE---GY-------QIGKTKVFLRAGQ 49 (841)
Q Consensus 21 ~~~~~~iL~~~~~~---~y-------q~G~TKvF~rag~ 49 (841)
...+..+|...+++ .. .=|+|+.|+-.-.
T Consensus 72 ~~~~~~~L~e~gie~~~~iilrR~i~~~GrSr~~INg~~ 110 (557)
T COG0497 72 NPPARAWLEENGIEDDEEVILRRVISADGRSRAFINGQP 110 (557)
T ss_pred chHHHHHHHHcCCCCcCcEEEEEEEcCCCceeEEECCEE
Confidence 34566777777553 22 2267777774433
No 369
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=41.69 E-value=3.9e+02 Score=27.05 Aligned_cols=29 Identities=34% Similarity=0.435 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEET 329 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~ 329 (841)
+..+...|+.+..+|+..+.+++.+.+.+
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333
No 370
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=41.51 E-value=33 Score=38.50 Aligned_cols=27 Identities=37% Similarity=0.304 Sum_probs=18.0
Q ss_pred HHhHHHHHHHHHHhccccccccHHHHH
Q 003183 717 DELKHIRQAVGFLVIHQKYRISYDEIT 743 (841)
Q Consensus 717 ~~L~~l~Qa~~lLq~~kk~~~~~~~i~ 743 (841)
..|...++|.+||..+-+-..+++.|+
T Consensus 564 isldEF~~a~~l~~sh~~~~i~~~~i~ 590 (631)
T KOG0377|consen 564 ISLDEFRTAWKLLSSHMNGAISDDEIL 590 (631)
T ss_pred eeHHHHHHHHHHHHhhcCCCcCHHHHH
Confidence 456777788888887754455555554
No 371
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=40.97 E-value=2.4e+02 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003183 305 NEKLKTLVSSLEKKIDETEKKFEETSK 331 (841)
Q Consensus 305 ~~~L~~~l~~l~~~~~e~e~~~~e~~~ 331 (841)
+++|..++.+|+..+..+-.+.+.++.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~ 44 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKE 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555554444444444443
No 372
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=40.92 E-value=6.1e+02 Score=29.11 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLE 316 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~ 316 (841)
-|.++|..|+.++.+.-
T Consensus 407 ~l~~eNk~L~~QLrDTA 423 (488)
T PF06548_consen 407 FLKDENKGLQIQLRDTA 423 (488)
T ss_pred HHHHHhHHHHHHHHhHH
Confidence 34445555554444433
No 373
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.85 E-value=2.6e+02 Score=33.13 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
..+.++..+++++++++.+++.++..+
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555555555555544
No 374
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.83 E-value=1.4e+02 Score=27.36 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le 365 (841)
..|+-+...|++.+.+++
T Consensus 39 ~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 39 ARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444444333
No 375
>PRK04325 hypothetical protein; Provisional
Probab=40.29 E-value=2e+02 Score=24.41 Aligned_cols=12 Identities=8% Similarity=0.257 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 003183 353 AMHRLEEKVSDM 364 (841)
Q Consensus 353 e~~~Le~~l~~l 364 (841)
++..|+.++..|
T Consensus 38 ~I~~L~~ql~~L 49 (74)
T PRK04325 38 TLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHH
Confidence 333344444333
No 376
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=40.24 E-value=2.4e+02 Score=28.21 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ 339 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~ 339 (841)
...++|+++.+...+....+.+.++..+.-+++.++..+++.++
T Consensus 81 s~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kk 124 (203)
T KOG3433|consen 81 SVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKK 124 (203)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 35556666666666666666666666666665555544444333
No 377
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=39.95 E-value=9.7e+02 Score=31.15 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDET 322 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~ 322 (841)
..+..+..+...+...+..+...+.+.
T Consensus 777 ~~~~~l~~~i~~~~~~~~~~~~~~~~~ 803 (1047)
T PRK10246 777 ETLTQLEQLKQNLENQRQQAQTLVTQT 803 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444443333
No 378
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=39.32 E-value=4.9e+02 Score=27.89 Aligned_cols=78 Identities=14% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
...+........+.+.+.....+...+.+.+.......+..+++.+...++.+.+..+.+|+.+-.++......++.+
T Consensus 180 Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 180 EAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 379
>PTZ00233 variable surface protein Vir18; Provisional
Probab=39.30 E-value=17 Score=42.20 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=35.9
Q ss_pred CHHHHHHHHhcCCC-----CCCCCCCCCHHHHHHHHhhhhcCCCCCCCCcccccCCCccccccccc
Q 003183 751 SVQQLYRICTLYWD-----DNYNTRSVSPNVISSMRILMTEDSNDATSNSFLLDDNSSIPFSVDDL 811 (841)
Q Consensus 751 s~~Qi~kil~~Y~~-----d~~e~~~v~~~~i~~v~~~~~~~~~~~~~~~ll~D~~~~~Pf~~~~~ 811 (841)
..+=|.-||=.|+| ..-. ..=..-+.+.+...|++.+ +||+..+|||+++.+
T Consensus 443 GIvLLLGLLFKyTPLWRvLTKkn-RKk~a~inEeLnsVlQePS--------ImdeERSIPFSYgAF 499 (509)
T PTZ00233 443 GIALLLGLLFKYTPLWRVLTKKN-RKKGAGINEELNSVLQEPS--------IMDEERSIPFSYSAF 499 (509)
T ss_pred hHHHHHHHhhccchhHHhhhhcc-ccccccccHHHHhhhcccc--------ccccccccCccccce
Confidence 34455577778887 2222 1233445677777788766 599999999999997
No 380
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.81 E-value=3.2e+02 Score=32.30 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS------------------EERLKQALEAESKIVQLKTAMHR 356 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~------------------~~~~~~l~~~e~~~~~L~~e~~~ 356 (841)
.+.+.+|+++...++.++..++.++..++.++.-++... .++..-+.-..+++.++...+..
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666655555554444443332221 11112222234455667777778
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003183 357 LEEKVSDMETENQILRQQ 374 (841)
Q Consensus 357 Le~~l~~le~E~~~l~~~ 374 (841)
++.++.++++++..++++
T Consensus 150 ~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 150 AERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887765
No 381
>PRK00736 hypothetical protein; Provisional
Probab=38.76 E-value=2.1e+02 Score=23.80 Aligned_cols=11 Identities=9% Similarity=0.483 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 003183 354 MHRLEEKVSDM 364 (841)
Q Consensus 354 ~~~Le~~l~~l 364 (841)
+..|..++..|
T Consensus 35 i~~L~~ql~~L 45 (68)
T PRK00736 35 VEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 382
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=38.74 E-value=2.5e+02 Score=23.93 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKID 320 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~ 320 (841)
+..++.|.+||=.|+-.+--|++.+.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34566667777666666666665544
No 383
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=38.07 E-value=3.8e+02 Score=25.93 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 353 AMHRLEEKVSDMETENQ 369 (841)
Q Consensus 353 e~~~Le~~l~~le~E~~ 369 (841)
.+.+|...+..+..+++
T Consensus 116 ~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 116 ALAELAQRIEQLEQEAQ 132 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 384
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=38.06 E-value=2.4e+02 Score=29.28 Aligned_cols=12 Identities=17% Similarity=0.033 Sum_probs=7.5
Q ss_pred ccCCCcchhHHH
Q 003183 495 NEDDNDHMAYWL 506 (841)
Q Consensus 495 ~~~d~~~l~fWL 506 (841)
.+.++..+.||-
T Consensus 211 ~~~~Is~~~~lt 222 (292)
T KOG4005|consen 211 EEFDISRLEELT 222 (292)
T ss_pred hhhhHHHHHHHH
Confidence 345666777774
No 385
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=37.58 E-value=1.1e+02 Score=27.12 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 335 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 335 ~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.+..+..+++..+++|.+.++..+++--+|.+||+.+-|
T Consensus 60 RlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQ 98 (120)
T KOG3650|consen 60 RLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQ 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 344455566666777777777777777788888887765
No 386
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.20 E-value=2.3e+02 Score=32.53 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=22.9
Q ss_pred HHhc-cCCCCC-HHHHHHHHhcCCCCCCCCCCCCHH
Q 003183 742 ITND-LCPILS-VQQLYRICTLYWDDNYNTRSVSPN 775 (841)
Q Consensus 742 i~~~-~C~~Ls-~~Qi~kil~~Y~~d~~e~~~v~~~ 775 (841)
.+.. .||.++ +.=|..||.+|.+++.- -.||..
T Consensus 379 ~vh~ln~~~~ai~R~i~Aile~~~~~~G~-i~iP~~ 413 (418)
T TIGR00414 379 YVHTLNGTALAIGRTIVAILENYQTEDGS-VEIPEV 413 (418)
T ss_pred EEEeecCcchHHHHHHHHHHHHccCCCCC-EeCChh
Confidence 4444 488888 78889999998887643 246544
No 387
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.79 E-value=5.4e+02 Score=30.74 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 003183 596 NLKKELSSLL 605 (841)
Q Consensus 596 ~~~~~l~~~L 605 (841)
.++.+|...+
T Consensus 532 ~l~~~l~e~i 541 (555)
T TIGR03545 532 KLKAKLNEKL 541 (555)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 388
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.58 E-value=1.8e+02 Score=26.81 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++.+|+..+..+-++...|+-||+.|+.
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554
No 389
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.39 E-value=3e+02 Score=24.23 Aligned_cols=27 Identities=15% Similarity=0.366 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEK 324 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~ 324 (841)
++.|.....+|.++++........++.
T Consensus 41 i~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 41 IQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444444444444333333
No 390
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.05 E-value=8.8e+02 Score=29.54 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 211 GALQAAKNKLEKQVEELTWRLQ 232 (841)
Q Consensus 211 ~~l~~~~~~le~kv~el~~~l~ 232 (841)
..|.......++++..+...+.
T Consensus 64 ~~L~~~ia~~eael~~l~s~l~ 85 (660)
T KOG4302|consen 64 ARLLQEIAVIEAELNDLCSALG 85 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444555555555554444
No 391
>PLN03188 kinesin-12 family protein; Provisional
Probab=36.03 E-value=1.1e+03 Score=30.82 Aligned_cols=18 Identities=0% Similarity=0.156 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le 365 (841)
...+++.+.+..++++|+
T Consensus 1221 ~~~eqe~~~~~k~~~klk 1238 (1320)
T PLN03188 1221 MDAEQEAAEAYKQIDKLK 1238 (1320)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555666666565554
No 392
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=35.84 E-value=6.3e+02 Score=27.74 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHH
Q 003183 135 SAVCIQTGMRGMAAR 149 (841)
Q Consensus 135 aai~iQs~~Rg~~aR 149 (841)
+-..+++.||+....
T Consensus 72 ~k~KLE~LCRELQk~ 86 (309)
T PF09728_consen 72 AKSKLESLCRELQKQ 86 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555555433
No 393
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=35.80 E-value=5.5e+02 Score=27.10 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKT-----LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~-----~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
-.++.-|..||++|-. .+.+|+.++.-.+...++++..-+++-.-+.++.+.++..++.+-=|.+++..-+++.+
T Consensus 216 MAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq 295 (330)
T KOG2991|consen 216 MAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQ 295 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 3456666777766643 34444444444444455555555555444555666666666777777777777777777
Q ss_pred HHHH
Q 003183 370 ILRQ 373 (841)
Q Consensus 370 ~l~~ 373 (841)
.+++
T Consensus 296 ~l~k 299 (330)
T KOG2991|consen 296 RLKK 299 (330)
T ss_pred HHHH
Confidence 7766
No 394
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.76 E-value=2.6e+02 Score=27.50 Aligned_cols=29 Identities=45% Similarity=0.606 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEE 328 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e 328 (841)
.+..|+..|+.++..|+++++.+++++.+
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~ 129 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEK 129 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 395
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=35.73 E-value=4e+02 Score=27.11 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 250 AKLQSALQEMQLQFKESKE 268 (841)
Q Consensus 250 ~~L~~~l~~l~~~l~~~~~ 268 (841)
-.|+.+|.+|+.++...+.
T Consensus 99 vrLkrELa~Le~~l~~~~~ 117 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQ 117 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554443
No 396
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.60 E-value=3.8e+02 Score=26.48 Aligned_cols=12 Identities=17% Similarity=0.578 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 003183 357 LEEKVSDMETEN 368 (841)
Q Consensus 357 Le~~l~~le~E~ 368 (841)
+.+++.+|.+|.
T Consensus 121 mQe~i~~L~kev 132 (201)
T KOG4603|consen 121 MQEEIQELKKEV 132 (201)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 397
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=34.94 E-value=2.5e+02 Score=28.30 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 315 LEKKIDETEKKFEETSKISEERLKQ----ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 315 l~~~~~e~e~~~~e~~~~~~~~~~~----l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+.-..+++-.++..++.++..+.-+ +++...+++..-.++..|++..++|++||+.|+.
T Consensus 14 l~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 14 LRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 398
>COG5570 Uncharacterized small protein [Function unknown]
Probab=34.94 E-value=82 Score=24.58 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMET 366 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~ 366 (841)
+.+|+...-.|+++|++|+.
T Consensus 35 i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 35 IRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44455555556666665543
No 399
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=34.75 E-value=5.8e+02 Score=27.07 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 306 EKLKTLVSSLEKKIDETEKKF 326 (841)
Q Consensus 306 ~~L~~~l~~l~~~~~e~e~~~ 326 (841)
.+....+.+++..+.+.....
T Consensus 188 ~~~~~kL~Dl~~~l~eA~~~~ 208 (264)
T PF06008_consen 188 NDYNAKLQDLRDLLNEAQNKT 208 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344443333333333
No 400
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=34.70 E-value=47 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 003183 111 ASCLRIQRDLRMYLAKKA 128 (841)
Q Consensus 111 ~Aa~~IQ~~~R~~~~r~~ 128 (841)
-|+..||-+||.+..|+.
T Consensus 10 YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578889999998888874
No 401
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.67 E-value=2.3e+02 Score=26.01 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVS 362 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~ 362 (841)
..|+-+...|++.+.
T Consensus 39 ~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 39 TALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 402
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.64 E-value=2.8e+02 Score=23.37 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~ 370 (841)
|...+.+..-.+++++..+..
T Consensus 27 Ln~~laEq~~~i~k~q~qlr~ 47 (72)
T COG2900 27 LNDALAEQQLVIDKLQAQLRL 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 403
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.60 E-value=9.2e+02 Score=29.33 Aligned_cols=11 Identities=36% Similarity=0.431 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 003183 361 VSDMETENQIL 371 (841)
Q Consensus 361 l~~le~E~~~l 371 (841)
...|+-+|..+
T Consensus 301 ~~~LELeN~~l 311 (716)
T KOG4593|consen 301 LLGLELENEDL 311 (716)
T ss_pred HhhHHHHHHHH
Confidence 33444455444
No 404
>PRK10869 recombination and repair protein; Provisional
Probab=33.99 E-value=8.8e+02 Score=28.94 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.+..|+.++..+++++.++-.++...++
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 405
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=33.98 E-value=1.7e+02 Score=31.69 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 302 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 302 ~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le 365 (841)
..|+..|-=+++-|+..+++.+..+.+-..+.++..++++.....+.-|+-..++|++.|..-.
T Consensus 139 DNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRd 202 (405)
T KOG2010|consen 139 DNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRD 202 (405)
T ss_pred cccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555555555555555555555555555666667766776766665443
No 406
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=33.73 E-value=5.6e+02 Score=26.55 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
....|+.....++.++..++++++++-..+...+. ....++..++.+..++-...-+++..+..|+.|+..+++
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~---~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQE---EAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555554444443332222111 122334455555555555555555555566655555544
No 407
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=33.47 E-value=5.9e+02 Score=26.72 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=40.7
Q ss_pred CccccHHHHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHhHhHHHHHhh
Q 003183 630 SASSHWQSIIDSLNTLLSTL----KQNFVPPVLVQKIFTQTFSYINVQLFNSL 678 (841)
Q Consensus 630 ~~~~~~~~il~~L~~~~~~l----~~~~v~~~l~~q~f~qlf~~in~~~fN~L 678 (841)
..++-++.+++.+..+...| ..-.+|+++..-++..+.++++-.+...+
T Consensus 89 qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~ 141 (234)
T PF10474_consen 89 QHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGY 141 (234)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999999999999 78899999999999999988877765544
No 408
>PLN02939 transferase, transferring glycosyl groups
Probab=33.34 E-value=1.1e+03 Score=30.05 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhcc
Q 003183 720 KHIRQAVGFLVIH 732 (841)
Q Consensus 720 ~~l~Qa~~lLq~~ 732 (841)
..+..+++++.+|
T Consensus 851 h~IYAaADIFLmP 863 (977)
T PLN02939 851 HSIYAASDMFIIP 863 (977)
T ss_pred HHHHHhCCEEEEC
Confidence 3577777777776
No 409
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.12 E-value=2.6e+02 Score=32.73 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKK 325 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~ 325 (841)
+++....+|.++++++..+++++++.
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 410
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=33.10 E-value=2.6e+02 Score=23.90 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
+.+.++++..|..-+..|+.++.+...-+..++
T Consensus 14 L~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq 46 (76)
T PF11544_consen 14 LNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQ 46 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443
No 411
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=33.04 E-value=6.7e+02 Score=27.26 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 244 AKTQENAKLQSALQEMQLQF 263 (841)
Q Consensus 244 ~~~~e~~~L~~~l~~l~~~l 263 (841)
.+..|+++|...+.+|++.+
T Consensus 32 QKV~EVEKLsqTi~ELEEai 51 (351)
T PF07058_consen 32 QKVLEVEKLSQTIRELEEAI 51 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777665
No 412
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.98 E-value=9.2e+02 Score=28.84 Aligned_cols=8 Identities=38% Similarity=0.484 Sum_probs=4.5
Q ss_pred CCCcchHH
Q 003183 455 NGKPVAAF 462 (841)
Q Consensus 455 ~~~p~pA~ 462 (841)
.|.|+++-
T Consensus 463 ~Gv~s~~~ 470 (582)
T PF09731_consen 463 RGVPSEAQ 470 (582)
T ss_pred CCCCCHHH
Confidence 36666554
No 413
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=32.75 E-value=2.9e+02 Score=27.02 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKID 320 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~ 320 (841)
+..+..+...++.++.+..+.+.
T Consensus 22 ~~~~~~e~~~~k~ql~~~d~~i~ 44 (155)
T PF06810_consen 22 VDKVKEERDNLKTQLKEADKQIK 44 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333333
No 414
>PLN02320 seryl-tRNA synthetase
Probab=32.70 E-value=2.2e+02 Score=33.46 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
+-++..+..++..++++++.+.....+++.. .... .+..++.++...+++++..+++++..++++...+-
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~----~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAVANKMKG-KLEP----SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555444444444332 0000 01122333455666777777777777777766643
No 415
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=32.69 E-value=6.6e+02 Score=27.08 Aligned_cols=9 Identities=33% Similarity=0.568 Sum_probs=3.3
Q ss_pred HHHHHHHhC
Q 003183 24 CKRLLEKVG 32 (841)
Q Consensus 24 ~~~iL~~~~ 32 (841)
|-.+.++.|
T Consensus 65 aawLikk~G 73 (384)
T KOG0972|consen 65 AAWLIKKSG 73 (384)
T ss_pred HHHHHHhcC
Confidence 333333333
No 416
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=32.19 E-value=4.3e+02 Score=26.83 Aligned_cols=68 Identities=25% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ-ALEAESKIVQLKTAMHRLEEKVS 362 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~-l~~~e~~~~~L~~e~~~Le~~l~ 362 (841)
...-..+..+.+.++.+..+|+..+.+++++.+..+....+...- -+...+.+.-|++....|+.+++
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 417
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.16 E-value=2.5e+02 Score=32.23 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
.+++-+|..+..++..++++|+.+..++.+.+........+ ....+.+.+..+..+++.++.++..++.+.+.+-
T Consensus 28 ~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 28 VDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44666777777777777777777666666665532221111 1223344555666677777777777777765543
No 418
>PHA03011 hypothetical protein; Provisional
Probab=32.05 E-value=3.5e+02 Score=24.15 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 314 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 314 ~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
++.+.++++..+..++..+..-.+.+.++.+.-+++--+++.-|+.++.+|++.
T Consensus 61 ai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 61 AIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 333333344444444444443343444444444444445555555555555443
No 419
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.66 E-value=4.7e+02 Score=28.19 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++...+..+...+.+++.|....++
T Consensus 164 ~~l~~~~~~~s~~~~k~esei~~Ik~ 189 (300)
T KOG2629|consen 164 ASLKNTLVQLSRNIEKLESEINTIKQ 189 (300)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33333333444555555555555544
No 420
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=31.56 E-value=3.9e+02 Score=24.10 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLE 316 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~ 316 (841)
+......++..+..+.
T Consensus 77 l~~q~~~l~~~l~~l~ 92 (127)
T smart00502 77 LEQQLESLTQKQEKLS 92 (127)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444333333
No 421
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=31.50 E-value=4.2e+02 Score=24.49 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~ 369 (841)
..+.+.++.++..+..+.++..
T Consensus 96 ~~l~~~~~~l~~~l~~l~~~~~ 117 (126)
T TIGR00293 96 EELEKAIEKLQEALAELASRAQ 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333
No 422
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.49 E-value=7.6e+02 Score=27.42 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 200 LRKLKMAARETGALQAAKNKLEKQVE 225 (841)
Q Consensus 200 l~~lk~~a~~~~~l~~~~~~le~kv~ 225 (841)
+.+|......+..++......+..+.
T Consensus 7 L~KL~et~~~V~~m~~~L~~~~~~L~ 32 (344)
T PF12777_consen 7 LDKLKETEEQVEEMQEELEEKQPELE 32 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666655555444444333
No 423
>PRK00846 hypothetical protein; Provisional
Probab=31.23 E-value=3.4e+02 Score=23.29 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+..++.|.+.+......+.+|+..+..+..
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555444433
No 424
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.78 E-value=4.4e+02 Score=24.48 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.++..+++.++.++..+.+++.+...+
T Consensus 94 ~r~~~l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 94 KKIEELTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555444443
No 425
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=30.52 E-value=9e+02 Score=27.96 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 342 EAESKIVQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 342 ~~e~~~~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
....++.+.+.++..++.++...+..+..
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556666667777777777666665543
No 426
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=29.91 E-value=2.8e+02 Score=33.75 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDME 365 (841)
Q Consensus 350 L~~e~~~Le~~l~~le 365 (841)
++.+++.+.++-..+.
T Consensus 610 ~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 610 AKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 427
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=29.91 E-value=4.6e+02 Score=25.04 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHR 356 (841)
Q Consensus 344 e~~~~~L~~e~~~ 356 (841)
+..+.+|..|.+.
T Consensus 81 e~~i~rL~~ENe~ 93 (135)
T TIGR03495 81 EQRIERLKRENED 93 (135)
T ss_pred HHHHHHHHHcCHH
Confidence 3334444433333
No 428
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.84 E-value=6.6e+02 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~ 369 (841)
..|+..+..|+.+|..++....
T Consensus 116 ~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 116 EKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333
No 429
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=29.37 E-value=68 Score=36.19 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 158 TRASILIQSHCRKYLARLHYMK 179 (841)
Q Consensus 158 ~~aA~~IQ~~~R~~~~r~~~~~ 179 (841)
-+||+.||+|+|++.+|...++
T Consensus 17 ikaAilIQkWYRr~~ARle~rr 38 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARR 38 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777665543
No 430
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.30 E-value=3.1e+02 Score=22.19 Aligned_cols=12 Identities=50% Similarity=0.689 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 003183 217 KNKLEKQVEELT 228 (841)
Q Consensus 217 ~~~le~kv~el~ 228 (841)
...|+.++..|+
T Consensus 28 ~~~Le~~~~~L~ 39 (64)
T PF00170_consen 28 IEELEEKVEELE 39 (64)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 431
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=29.28 E-value=1.2e+03 Score=29.09 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.......++..++..++.|+..+.+..-.+..+......+..........+..|.-.++...+++.+++.++..+
T Consensus 466 ele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~ 540 (775)
T PF10174_consen 466 ELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKL 540 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445556666666666666666666666555555555555555544455666667777777777777777766663
No 432
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=29.08 E-value=6.2e+02 Score=25.64 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 003183 308 LKTLVSSLEKKIDE 321 (841)
Q Consensus 308 L~~~l~~l~~~~~e 321 (841)
|+.-+...+..+..
T Consensus 114 L~~~l~~a~~nl~~ 127 (188)
T PF05335_consen 114 LKAALKAAQANLAN 127 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 433
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=29.05 E-value=37 Score=41.45 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=15.8
Q ss_pred CccchHHHHHhhccccC
Q 003183 1 MFFLLNNFLTVYGIIVS 17 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~ 17 (841)
+|++|++|+.||++|++
T Consensus 613 ~r~~~~~F~~rY~~L~~ 629 (677)
T cd01387 613 VRLPFQHFIDRYRCLVA 629 (677)
T ss_pred ccccHHHHHHHHHHhCc
Confidence 69999999999999994
No 434
>PF14282 FlxA: FlxA-like protein
Probab=28.93 E-value=3.4e+02 Score=24.64 Aligned_cols=30 Identities=13% Similarity=0.399 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..++..|+.++..|+.+|..++.+......
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888888888877777665433
No 435
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=28.74 E-value=5.5e+02 Score=24.89 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 331 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~ 331 (841)
.+.++-+.+..++|+.....+...+.++..+...+..
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~ 129 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQ 129 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544444444433
No 436
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.72 E-value=3.7e+02 Score=26.88 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
...|++++-..+.+|+.-+..+.
T Consensus 123 hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 123 HRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543
No 437
>PF15294 Leu_zip: Leucine zipper
Probab=28.17 E-value=7.9e+02 Score=26.53 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES 345 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~ 345 (841)
.-+.+|..+|+.+.+.|+.++..++.....+-.++.++..++.+++.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666665566666555555443
No 438
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=28.11 E-value=6.5e+02 Score=25.52 Aligned_cols=67 Identities=7% Similarity=0.220 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 307 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 307 ~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+.++..|...+..........+........++.+...-+..-+..++.|..++.....+.+..++
T Consensus 106 ~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 106 QAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333333333333333444444455555444444444433
No 439
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.00 E-value=1.4e+03 Score=29.38 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=20.3
Q ss_pred ccc-cccccccccccccccCCCcchhhhcCccccccc
Q 003183 804 IPF-SVDDLSNSLQEKDFLDVKAAEELLENPAFEFLY 839 (841)
Q Consensus 804 ~Pf-~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~ 839 (841)
-|| ..++|...+|+.++.- |.+-++ +|.|+|+.
T Consensus 1074 aPFfvlDEiDAALDntNi~k--vasyIr-~~~~Q~Iv 1107 (1141)
T KOG0018|consen 1074 APFFVLDEIDAALDNTNIGK--VASYIR-SSNFQFIV 1107 (1141)
T ss_pred CCceehhhHHHHhhhccHHH--HHHHHh-cCCceEEE
Confidence 443 4556766777766654 345555 77788863
No 440
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=27.91 E-value=9.2e+02 Score=27.27 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 206 AARETGALQAAKNKLEKQVEELTWRLQL 233 (841)
Q Consensus 206 ~a~~~~~l~~~~~~le~kv~el~~~l~~ 233 (841)
-..++..|...+..+|+.+..+...+..
T Consensus 69 ~~~Ei~~L~~~K~~le~aL~~~~~pl~i 96 (384)
T PF03148_consen 69 LDEEIDLLEEEKRRLEKALEALRKPLSI 96 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3446667777777788777777655553
No 441
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=27.69 E-value=4e+02 Score=22.97 Aligned_cols=9 Identities=22% Similarity=0.567 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 003183 359 EKVSDMETE 367 (841)
Q Consensus 359 ~~l~~le~E 367 (841)
++|.+|..+
T Consensus 64 eEI~rLr~e 72 (79)
T PF08581_consen 64 EEIARLRRE 72 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 442
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.62 E-value=3.9e+02 Score=28.80 Aligned_cols=35 Identities=31% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 330 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~ 330 (841)
..++.|++.|.+|+.++.++++++..+++-+.+..
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777766666666555543
No 443
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=27.44 E-value=3.8e+02 Score=22.58 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 306 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 306 ~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~l 364 (841)
..++..-.+..+...+-+..+.++.........+...+...+..|...+..|.+++++|
T Consensus 10 ~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 10 SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 444
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=27.43 E-value=8.2e+02 Score=26.49 Aligned_cols=15 Identities=13% Similarity=0.550 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDM 364 (841)
Q Consensus 350 L~~e~~~Le~~l~~l 364 (841)
.+.+...++.+|..|
T Consensus 282 ~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 282 FQEEAEKLQKEIQDL 296 (297)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 344455555555444
No 445
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.29 E-value=3.5e+02 Score=31.37 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 306 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA------LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 306 ~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l------~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+..++..+++.+.++..+++++++....+...- .+.......+......+.+++.+++.+...++.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666655555544433210 122334455556666666666666666665554
No 446
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=27.23 E-value=5.4e+02 Score=25.16 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 306 EKLKTLVSSLEKKIDETEK 324 (841)
Q Consensus 306 ~~L~~~l~~l~~~~~e~e~ 324 (841)
..++.++..++.++.+..+
T Consensus 23 ~~~~~e~~~~k~ql~~~d~ 41 (155)
T PF06810_consen 23 DKVKEERDNLKTQLKEADK 41 (155)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333
No 447
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.08 E-value=2.8e+02 Score=21.09 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003183 308 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 347 (841)
Q Consensus 308 L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~ 347 (841)
++.+.+.|+...+.+....+.+.++++.+..++..+...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 448
>PF13514 AAA_27: AAA domain
Probab=26.97 E-value=1.5e+03 Score=29.53 Aligned_cols=304 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 003183 61 LGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ 140 (841)
Q Consensus 61 l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQ 140 (841)
+......+...-+....+.................++.+..--. ...-+..+...-+..-........+.....=.
T Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~----~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~ 682 (1111)
T PF13514_consen 607 LARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGP----AEELAALLEEAEALLEEWEQAAARREQLEEEL 682 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 141 TGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKL 220 (841)
Q Consensus 141 s~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a~~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~l 220 (841)
...+.-+.+..-............+..|..++....+............+-.-.-.+.....+......+..+......+
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f 762 (1111)
T PF13514_consen 683 QQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAF 762 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH----------HHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003183 221 EKQVEELTWRLQLE----------KRMRVDMEEAKT--QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQ 288 (841)
Q Consensus 221 e~kv~el~~~l~~e----------~~~~~~le~~~~--~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~ 288 (841)
+.++..+...+... ..+...+..... .+...+..+++.++.++......+..-......+........
T Consensus 763 ~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~ 842 (1111)
T PF13514_consen 763 EEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVED 842 (1111)
T ss_pred HHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 289 EVPVIDHAVVEELTSENEKLKTLVSSLEKKI--DETEKKFEETSKIS-----EERLKQALEAESKIVQLKTAMHRLEEKV 361 (841)
Q Consensus 289 e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~--~e~e~~~~e~~~~~-----~~~~~~l~~~e~~~~~L~~e~~~Le~~l 361 (841)
.. +-........+...+..++..++..+ ..-.....++.... ..+..++..++..+..+..++..+.+++
T Consensus 843 ~e---~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~ 919 (1111)
T PF13514_consen 843 EE---ELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQEER 919 (1111)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 003183 362 SDMETENQIL 371 (841)
Q Consensus 362 ~~le~E~~~l 371 (841)
..++.++..+
T Consensus 920 ~~~~~~l~~l 929 (1111)
T PF13514_consen 920 AELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHH
No 449
>PF14992 TMCO5: TMCO5 family
Probab=26.63 E-value=8.4e+02 Score=26.34 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----c
Q 003183 213 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVV----Q 288 (841)
Q Consensus 213 l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~----~ 288 (841)
+.....++..+-..+-++++..+.....++..-..-..-+... ++...-..+.+..+........++..+.... .
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~ 87 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQ 87 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhh
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 289 EVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 289 e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~ 368 (841)
+.+.....+.....-+...++..+...+..+..+.......++...++..+......-+.+.-..+..+++.+.+++++.
T Consensus 88 elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ek 167 (280)
T PF14992_consen 88 ELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEK 167 (280)
T ss_pred hhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 003183 369 QIL 371 (841)
Q Consensus 369 ~~l 371 (841)
+.+
T Consensus 168 E~~ 170 (280)
T PF14992_consen 168 EML 170 (280)
T ss_pred HHH
No 450
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=26.62 E-value=3.8e+02 Score=28.37 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 192 RGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKE 265 (841)
Q Consensus 192 R~~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~ 265 (841)
+-++.|+.++....+.+.....-+...+||.+|..+..+.. ....+..+|.+.+.++..++.+
T Consensus 204 ~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~-----------~L~~~l~~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 204 KIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNR-----------DLASELSKLKEQVAELKQKVME 266 (279)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHH
No 451
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=26.60 E-value=8.8e+02 Score=26.57 Aligned_cols=213 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 003183 149 RNELRFRRQTRASILIQS---HCRKYLARLHYMKLKKAAITTQCAW---RGKVARRELRKLKMAARETGAL-QAAKNKLE 221 (841)
Q Consensus 149 R~~~~~~~~~~aA~~IQ~---~~R~~~~r~~~~~~~~a~~~iQ~~~---R~~~aRr~l~~lk~~a~~~~~l-~~~~~~le 221 (841)
+..+..+.+......++- ..|...-....+.++.+.+.+|... -.++.-.-++++....++-+.| ...-..-|
T Consensus 26 ~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE 105 (310)
T PF09755_consen 26 RKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEE 105 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccccccchhh
Q 003183 222 KQVEELTWRLQLEKRMRVDMEEAKTQE----NAKLQSALQEMQLQFKESKEKLMK---EIEVAKKEAEKVPVVQEVPVID 294 (841)
Q Consensus 222 ~kv~el~~~l~~e~~~~~~le~~~~~e----~~~L~~~l~~l~~~l~~~~~~l~~---e~~~~~~~~ee~~~~~e~~~~~ 294 (841)
--...|..++..-+..+.+++....++ +.+|+..+..++.+.......+.. +.-.+...++.- .
T Consensus 106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~E---------Q 176 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQE---------Q 176 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH---------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKID---------------------------ETEKKFEETSKISEERLKQALEAESKI 347 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~---------------------------e~e~~~~e~~~~~~~~~~~l~~~e~~~ 347 (841)
+.-++.|.+...+|..+...|+.+++ ....-..++...+..+...-.+...++
T Consensus 177 E~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~ 256 (310)
T PF09755_consen 177 EALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKM 256 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
.....+...+.++..+|+..+..
T Consensus 257 ~~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 257 AQYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 452
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=26.30 E-value=1.1e+03 Score=27.81 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 198 RELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVA 277 (841)
Q Consensus 198 r~l~~lk~~a~~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~ 277 (841)
|+...|-.+--++-..+.++.-..+.++.---.|.-|+.....--++..+...+|+.++.+++.++..+..++...+.++
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 278 KKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 328 (841)
Q Consensus 278 ~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e 328 (841)
....+.---.....-......+..-.+...-+..+-+|++.+.=.|..+..
T Consensus 381 ~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrWTEMiRAs 431 (832)
T KOG2077|consen 381 KDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRAS 431 (832)
T ss_pred cccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHh
No 453
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.17 E-value=1e+03 Score=27.31 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 182 KAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQL 261 (841)
Q Consensus 182 ~a~~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~ 261 (841)
..+...+---++...+..-..+...-+-...+-+.+.-=+.-+..|...+. .....+..|....++-..
T Consensus 253 h~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~-----------~~~~~~~~ltqqwed~R~ 321 (521)
T KOG1937|consen 253 HLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLA-----------ELNKQMEELTQQWEDTRQ 321 (521)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHH
Q 003183 262 QFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKID---------ETEKKFEETSKI 332 (841)
Q Consensus 262 ~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~---------e~e~~~~e~~~~ 332 (841)
-+......+..+.+...-..+++..+++ -+..+..+..+..+-+.....|+.+++ ....++.|....
T Consensus 322 pll~kkl~Lr~~l~~~e~e~~e~~~Iqe----leqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gn 397 (521)
T KOG1937|consen 322 PLLQKKLQLREELKNLETEDEEIRRIQE----LEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGN 397 (521)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 333 SEERLKQALEAESKIVQLKTAMHRLEEKVSD 363 (841)
Q Consensus 333 ~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~ 363 (841)
..+...++......-.+|+.+.+++.+.+.+
T Consensus 398 iRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 398 IRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 454
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.04 E-value=2.4e+02 Score=30.14 Aligned_cols=53 Identities=8% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 322 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 322 ~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
.+.++..++.........+.++..++++|+.++.+|+-+++.+.-+++.++++
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 455
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.01 E-value=2e+02 Score=26.17 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 332 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 375 (841)
Q Consensus 332 ~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~~ 375 (841)
...++..++..++.++.+++.+...|+.++..|++....+.+.+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A 71 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
No 456
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.84 E-value=1e+03 Score=27.12 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003183 175 LHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQS 254 (841)
Q Consensus 175 ~~~~~~~~a~~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~ 254 (841)
...+...-.+..+=...-.|.|.++-+.-+.--+....=-+.....|..+.+++.+|+ ..+.|......
T Consensus 212 n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Le-----------kar~e~rnvav 280 (575)
T KOG4403|consen 212 NWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLE-----------KAREEQRNVAV 280 (575)
T ss_pred chhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhchhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 003183 255 ALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKID-------------- 320 (841)
Q Consensus 255 ~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~-------------- 320 (841)
+...|+..+. |.-.+....+.. .++...+|.+.+...+...+++++
T Consensus 281 ek~~lerkl~--------ea~rl~elreg~------------e~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~w 340 (575)
T KOG4403|consen 281 EKLDLERKLD--------EAPRLSELREGV------------ENETSRKELEQLRVALEKAEKELEANSSWSAPLALQKW 340 (575)
T ss_pred hhhhHHHHHh--------hhhhhhhhhcch------------hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHH
Q ss_pred ---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 321 ---ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 357 (841)
Q Consensus 321 ---e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~L 357 (841)
--|-+..-.++.+....+++..+.+.++.+++.-..+
T Consensus 341 Lq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv 380 (575)
T KOG4403|consen 341 LQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSV 380 (575)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcch
No 457
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=25.71 E-value=1.2e+03 Score=27.78 Aligned_cols=141 Identities=18% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 203 LKMAARETGALQ----AAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAK 278 (841)
Q Consensus 203 lk~~a~~~~~l~----~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~ 278 (841)
+..+...+..+. +....+++.+..|.+.++ .+..++.+.-....+++.++.+..+.+......+.
T Consensus 398 ~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD-----------~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e 466 (607)
T KOG0240|consen 398 LSEEEMSITKLKGSLEEEEDILTERIESLYQQLD-----------QKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYE 466 (607)
T ss_pred hhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 279 KEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 358 (841)
Q Consensus 279 ~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le 358 (841)
....++ .+++.++...+.++.+.-..++++.......-++......+. .+..+..+++-....+
T Consensus 467 ~~q~e~--------------~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n--~~sel~sl~~~~~~~~ 530 (607)
T KOG0240|consen 467 DIQQEL--------------SEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQN--LKSELQSLQEPSEHQS 530 (607)
T ss_pred HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh--hHHHHHhhhhcccchh
Q ss_pred HHHHHHHHHHHH
Q 003183 359 EKVSDMETENQI 370 (841)
Q Consensus 359 ~~l~~le~E~~~ 370 (841)
..+..+..+...
T Consensus 531 ~r~~~~~~~l~~ 542 (607)
T KOG0240|consen 531 KRITELLSELRK 542 (607)
T ss_pred HHHHHHHHHHHh
No 458
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=25.54 E-value=5.8e+02 Score=25.43 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEK 360 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~ 360 (841)
++|..--.+|...++.-..++++.-+++.......+.....++.+..+...|..+++..+++
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.38 E-value=5.3e+02 Score=23.65 Aligned_cols=75 Identities=16% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------------------------------
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL----------------------------------------- 337 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~----------------------------------------- 337 (841)
+.+......++.+++.+...+..+.....+.+..++.+.
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 338 -----KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 338 -----~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
....-.+.++..++..+..++..+.+++.+...++.
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 460
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=25.25 E-value=1.2e+03 Score=27.59 Aligned_cols=198 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 003183 164 IQSHCRKYLARLHYMKLKKAAITTQCAWRGKVAR--RELRKLKMAARETG---------ALQAAKNKLEKQVEELTWRLQ 232 (841)
Q Consensus 164 IQ~~~R~~~~r~~~~~~~~a~~~iQ~~~R~~~aR--r~l~~lk~~a~~~~---------~l~~~~~~le~kv~el~~~l~ 232 (841)
||+.-----+-.....++.-.-.|-++++....- .++..|+..-+... .+.+....|..++.+....+.
T Consensus 193 ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~ 272 (570)
T COG4477 193 IEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLT 272 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchh-------------------
Q 003183 233 LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI------------------- 293 (841)
Q Consensus 233 ~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~------------------- 293 (841)
.-++...+.++...+..++..=..++.|.++.+...+....+.+-...
T Consensus 273 -------------~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY 339 (570)
T COG4477 273 -------------QLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESY 339 (570)
T ss_pred -------------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 294 -----DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 294 -----~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~ 368 (841)
+...+...+++.+.+++.+++..+.+++-+.....+........+.+.+.+++..++++.+..|+..=.+-+...
T Consensus 340 ~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l 419 (570)
T COG4477 340 RLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENL 419 (570)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 003183 369 QILRQQ 374 (841)
Q Consensus 369 ~~l~~~ 374 (841)
.+++.+
T Consensus 420 ~~~~~~ 425 (570)
T COG4477 420 ERLKSK 425 (570)
T ss_pred HHHHHH
No 461
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=25.21 E-value=6.3e+02 Score=24.43 Aligned_cols=112 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 246 TQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKK 325 (841)
Q Consensus 246 ~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~ 325 (841)
..|...+...+++.+.+.......|..|.+.++-++.++ +.-...|+.|+...+.-+..+..+....-.+
T Consensus 2 keE~~~~~~~l~~Ek~eHaKTK~lLake~EKLqfAlgei----------eiL~kQl~rek~afe~a~~~vk~k~~~Es~k 71 (153)
T PF15175_consen 2 KEEFEAVEKKLEEEKAEHAKTKALLAKESEKLQFALGEI----------EILSKQLEREKLAFEKALGSVKSKVLQESSK 71 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 326 FEETSKISEERLKQAL--EAESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 326 ~~e~~~~~~~~~~~l~--~~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
.+.+.....+...++. ..++.+..-..++.+|..-+...+..
T Consensus 72 ~dqL~~KC~~~~~ei~c~kqed~LngKe~~I~eLk~~l~sQK~~ 115 (153)
T PF15175_consen 72 KDQLITKCNEIESEIICHKQEDILNGKENEIKELKQRLASQKQN 115 (153)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhcccccchHHHHhhhHHHHHH
No 462
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=25.08 E-value=4.2e+02 Score=22.31 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 307 KLKTLVSSLEKKID-ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 307 ~L~~~l~~l~~~~~-e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+|+.++...-+.+. +-+++..+.+.....+...+.........|...+..|..++..|.+..+.+
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 463
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=25.04 E-value=1.2e+03 Score=27.60 Aligned_cols=170 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 185 ITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFK 264 (841)
Q Consensus 185 ~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~ 264 (841)
..+-..+....+++.+...+.+++.+. +++..+.+....+.....+.+-..+.. ...++.+..+.++...+..+.
T Consensus 12 ~~ig~~~ak~~a~~~l~~Ae~eAe~i~--keA~~eAke~~ke~~~EaeeE~~~~R~---Ele~el~~~e~rL~qrE~rL~ 86 (514)
T TIGR03319 12 LIIGYLLRKRIAEKKLGSAEELAKRII--EEAKKEAETLKKEALLEAKEEVHKLRA---ELERELKERRNELQRLERRLL 86 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHH
Q 003183 265 ESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ--ALE 342 (841)
Q Consensus 265 ~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~--l~~ 342 (841)
...+.+.+..+.+.+..+++ ..+-.++......++....++.....+...++++.-....+..++ +..
T Consensus 87 qRee~Lekr~e~Lekre~~L----------e~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~ 156 (514)
T TIGR03319 87 QREETLDRKMESLDKKEENL----------EKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEE 156 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 343 AESKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 343 ~e~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
.+.+...-...+-+--++-.+.+.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~a~~~ 183 (514)
T TIGR03319 157 VEEEARHEAAKLIKEIEEEAKEEADKK 183 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.04 E-value=1.1e+03 Score=26.99 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 203 LKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAE 282 (841)
Q Consensus 203 lk~~a~~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~e 282 (841)
+..-..++..+++....|+..++.|+..+..+-. -..+...+-.-+.+.|+.++.+..+....|...++..+.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~-------~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa 286 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQ-------FILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELA 286 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 283 KVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETE 323 (841)
Q Consensus 283 e~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e 323 (841)
.+ ++...-....-..++.+-++..+.++..+|
T Consensus 287 ~~---------EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 287 SM---------EEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred hH---------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 465
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=24.84 E-value=6.7e+02 Score=28.87 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 247 QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKF 326 (841)
Q Consensus 247 ~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~ 326 (841)
.|+..|+.++.-+..--....................+.. ............-+...+.+|..+-+.|-.++++++.-+
T Consensus 151 ~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~-~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V 229 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKS-ASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV 229 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 327 EETSKISEE-----RLKQALEAESKIVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 327 ~e~~~~~~~-----~~~~l~~~e~~~~~L~~e~~~Le~~l~~le 365 (841)
+++.+..-. ...+++.....+..+..++..+++.+...+
T Consensus 230 E~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~k 273 (424)
T PF03915_consen 230 EDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEK 273 (424)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 466
>PRK11519 tyrosine kinase; Provisional
Probab=24.78 E-value=1.4e+03 Score=28.26 Aligned_cols=158 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003183 181 KKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQ 260 (841)
Q Consensus 181 ~~a~~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~ 260 (841)
..++..+......++....-.+.....+...-+.+...+++.++.+.+.+++.=+.....+ ....+.+.+-..+.+++
T Consensus 240 ~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~v--d~~~ea~~~l~~~~~l~ 317 (719)
T PRK11519 240 EQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV--DLPLEAKAVLDSMVNID 317 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003183 261 LQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 340 (841)
Q Consensus 261 ~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l 340 (841)
.++.+.+.+.......+.. ..-.+..+..+...|+.++++++.++.. .-+.+.+...+..+.
T Consensus 318 ~ql~~l~~~~~~l~~~y~~--------------~hP~v~~l~~~~~~L~~~~~~l~~~~~~----lp~~e~~~~~L~Re~ 379 (719)
T PRK11519 318 AQLNELTFKEAEISKLYTK--------------EHPAYRTLLEKRKALEDEKAKLNGRVTA----MPKTQQEIVRLTRDV 379 (719)
T ss_pred HHHHHHHHHHHHHHHHhcc--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLE 358 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le 358 (841)
.-.++....+-+..++++
T Consensus 380 ~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 380 ESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHh
No 467
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=24.75 E-value=24 Score=40.91 Aligned_cols=125 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccc
Q 003183 214 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKV---PVVQEV 290 (841)
Q Consensus 214 ~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~---~~~~e~ 290 (841)
....++.|.+|..|+.+|..-.+..++.|..........++-+.+-+..+++.+..+....++.......+ ....|
T Consensus 368 ~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vE- 446 (495)
T PF12004_consen 368 MKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVE- 446 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhh-
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003183 291 PVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 347 (841)
Q Consensus 291 ~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~ 347 (841)
++|.+|..++..-++.-+.=|++.++++.-+...+..+...|..+++..
T Consensus 447 --------eELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~ry 495 (495)
T PF12004_consen 447 --------EELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKERY 495 (495)
T ss_dssp ---------------------------------------------------------
T ss_pred --------hhhhhhHHHHhcccccchHHHHHhhhhccccccccccccccccccccCC
No 468
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=24.60 E-value=1.5e+02 Score=26.74 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++++-|++++.+|++....|+.||..++.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 469
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.58 E-value=5.7e+02 Score=24.83 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 311 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 311 ~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
.++.+-.....++..+.-..+....+..++...+.....-.+.+.+|+..+..++.++.....+
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 470
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=24.53 E-value=4.7e+02 Score=22.67 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 366 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~ 366 (841)
+..+.+-..++...++.+++++..+..+..++-+.-.++..+....-++++.+-+.+.++-+.++.+..
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~ 89 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
No 471
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=24.50 E-value=33 Score=42.47 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=0.0
Q ss_pred CccchHHHHHhhcccc
Q 003183 1 MFFLLNNFLTVYGIIV 16 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~ 16 (841)
+|++|.+|+.||++|+
T Consensus 697 ~R~~~~~F~~RY~~L~ 712 (767)
T cd01386 697 ISVPLGEFVRRFGLLA 712 (767)
T ss_pred ccccHHHHHHHHHhhC
No 472
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=24.33 E-value=5.1e+02 Score=23.03 Aligned_cols=95 Identities=21% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003183 252 LQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 331 (841)
Q Consensus 252 L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~ 331 (841)
|+.++..++....+....+.. -......++....++..+......++-+..+..+.+..
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~---------------------k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~ 59 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADK---------------------KVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDN 59 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 332 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 332 ~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
+...+...+......+..|++.-..+...+..++.+
T Consensus 60 e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 60 EMKKLNTQLSKSSELIEQLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
No 473
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=24.32 E-value=5.3e+02 Score=25.74 Aligned_cols=63 Identities=24% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 302 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 302 ~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~l 364 (841)
..+...+-..+-.++.+++.++...++.-........+.-.....+..+++.+..|+.++.++
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
No 474
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.19 E-value=9.9e+02 Score=26.35 Aligned_cols=170 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHhHHHHHHHH
Q 003183 184 AITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELT-----------------WRLQLEKRMRVDMEEAKT 246 (841)
Q Consensus 184 ~~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el~-----------------~~l~~e~~~~~~le~~~~ 246 (841)
.+.-+.+-.....|.+|+.+-. .|++....++++..++. ..+...-..-.+--....
T Consensus 12 ~IL~~eLe~cq~ErDqyKlMAE------qLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~ 85 (319)
T PF09789_consen 12 LILSQELEKCQSERDQYKLMAE------QLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLK 85 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Q 003183 247 QENAKLQSALQEMQLQFKESKEKLMK---------------EIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTL 311 (841)
Q Consensus 247 ~e~~~L~~~l~~l~~~l~~~~~~l~~---------------e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~ 311 (841)
.|++.|+.++.+++..+.-....+.. +.+.+-..+|.+ ..++..|+.+...+-.+
T Consensus 86 ~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~----------~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 86 EEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKL----------REQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 312 VSSLEKKIDETEKKFEETSKIS--------------EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 312 l~~l~~~~~e~e~~~~e~~~~~--------------~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
.+++..+-+....+...+..+. +.+.-+..-+.+.+..++++..-++..+.+-+.-++
T Consensus 156 keEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 156 KEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=23.82 E-value=4.8e+02 Score=32.36 Aligned_cols=152 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHhhhhhhhhhhhhhh-----------hHHHHHHHHHHHHHHHHH
Q 003183 67 IIQRKVRSYLSRKNYIMLR-------RSAIHIQAACRGQLARTVYESMRRE-----------ASCLRIQRDLRMYLAKKA 128 (841)
Q Consensus 67 ~IQ~~~R~~~~Rk~~~~~r-------~aai~IQ~~~Rg~laR~~~~~~r~~-----------~Aa~~IQ~~~R~~~~r~~ 128 (841)
.+|..++ .+.+..+++ ..++.||+.+| ++.+++....|-. ..+-+||..++| |+.
T Consensus 292 ~~qaf~~---l~~~l~r~~qsi~~qs~qvv~Le~~iR-l~iqKR~~~ir~li~n~~pqeedtk~~erlqs~i~g---r~K 364 (1054)
T COG5261 292 VEQAFFH---LDRELHRLKQSISSQSKQVVVLERDIR-LLIQKRGNKIRLLIQNRMPQEEDTKFAERLQSNING---RKK 364 (1054)
T ss_pred HHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhhcccCchhhcchHHHHHHHHHhC---ccc
Q ss_pred HHhhchh-------HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q 003183 129 YKDMCFS-------AVCIQ--------TGMRGMAARNELRFRRQTRASILIQSHCRKYLAR------------------- 174 (841)
Q Consensus 129 ~~~~r~a-------ai~iQ--------s~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r------------------- 174 (841)
|...... ...|| +.++|...|-... .-.-.++.|..-||+..|
T Consensus 365 Y~~l~~rLslf~p~f~LlQ~~iPlfS~aic~grv~r~sid---~llni~klq~L~nG~~iRkl~~l~~s~~~~hlsv~~~ 441 (1054)
T COG5261 365 YFPLDRRLSLFGPLFFLLQSSIPLFSIAICVGRVKRFSID---ALLNIVKLQILGNGYEIRKLYSLGKSNCEEHLSVSLF 441 (1054)
T ss_pred cchHHhhhhhcCCceehhhhccchhhhHHhhcchheecHH---HHHHHHHHHHhhcceeeeeeecccccchhHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 175 -LHYMKLKKAAITTQCAWRGKVA-RRELRKLKMAARETGALQAAKNKLEKQVEELT 228 (841)
Q Consensus 175 -~~~~~~~~a~~~iQ~~~R~~~a-Rr~l~~lk~~a~~~~~l~~~~~~le~kv~el~ 228 (841)
.-|+....+.-..|++.||.+. .|.....-...-.-.++.+..+.+-+.+...+
T Consensus 442 q~L~R~evE~~sl~qsl~rG~l~~hrnm~nyfR~sqg~~Alre~r~~i~~~v~~~E 497 (1054)
T COG5261 442 QMLLRTEVEATSLVQSLLRGNLPVHRNMTNYFRRSQGQAALREIRYQIINDVAIHE 497 (1054)
T ss_pred HHHHHHHhhccHHHHHHHhccchHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhch
No 476
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=23.68 E-value=7.9e+02 Score=25.03 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHH
Q 003183 179 KLKKAAITTQCAWRGKVARRELRKLKMA------ARETGALQAAKNKLEKQVEELTWRLQLE----KRMRVDMEEAKTQE 248 (841)
Q Consensus 179 ~~~~a~~~iQ~~~R~~~aRr~l~~lk~~------a~~~~~l~~~~~~le~kv~el~~~l~~e----~~~~~~le~~~~~e 248 (841)
..+-.....|..+-...|--.-+.|..+ ..++..+...+..|+.+|.++..+++.. ...+.-.|.+...+
T Consensus 157 EIrMt~aAYqtlyeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~ee 236 (259)
T KOG4001|consen 157 EIRMTFAAYQTLYESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEE 236 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 249 NAKLQSALQEMQLQFK 264 (841)
Q Consensus 249 ~~~L~~~l~~l~~~l~ 264 (841)
+.-|......|+.+++
T Consensus 237 i~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 237 IEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHHHHHHHHHHh
No 477
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=23.55 E-value=3.1e+02 Score=29.41 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 319 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 319 ~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.+..++..+-+++.+++......+...++..|..+.+.|+.++..|+.|+..+++
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.41 E-value=4e+02 Score=31.86 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSL--EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l--~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
++--..+.......++...+| +.++++.++++++++...-+--.++....++++.++.++....+.+..+..+++..+
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~ 246 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDK 246 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred Hh
Q 003183 373 QQ 374 (841)
Q Consensus 373 ~~ 374 (841)
.+
T Consensus 247 ~~ 248 (555)
T TIGR03545 247 KQ 248 (555)
T ss_pred HH
No 479
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.21 E-value=1.5e+02 Score=25.33 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+.++.++..+|+++|++++.|++..+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
No 480
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.20 E-value=6.3e+02 Score=23.69 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE----------------RLKQALEAESKIVQLKTAMHRLEEK 360 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~----------------~~~~l~~~e~~~~~L~~e~~~Le~~ 360 (841)
+...+..-...++.++...+++++.++....+++-.-++ +..-...++..-..+.++++.|+.+
T Consensus 24 ~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~ 103 (131)
T KOG1760|consen 24 EFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESE 103 (131)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 003183 361 VSDMETENQILRQ 373 (841)
Q Consensus 361 l~~le~E~~~l~~ 373 (841)
+......+..++.
T Consensus 104 ~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 104 LESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHH
No 481
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=23.15 E-value=6.5e+02 Score=23.82 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 308 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 308 L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
|+-.++.|-.+|.++.........+..+...--..+....+.|..+...|++-+.+.+.-+..++
T Consensus 4 LeP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLq 68 (134)
T PF15233_consen 4 LEPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQ 68 (134)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 482
>PF14282 FlxA: FlxA-like protein
Probab=22.87 E-value=5.8e+02 Score=23.15 Aligned_cols=61 Identities=20% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 309 KTLVSSLEKKIDETEKKFEETSK----ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 309 ~~~l~~l~~~~~e~e~~~~e~~~----~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
...+..|.+.+..+.+.+.++.. .-+....+...++..|..|+.++..+..+..+......
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~~ 82 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQKQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 483
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=22.86 E-value=5.2e+02 Score=31.45 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER-------LKQALEAESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~-------~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
..+...+..+..+++.++..+++++++++.++.+++.....- ..++.++..+..+++.+++.+.++-..+..+
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~ 627 (638)
T PRK10636 548 KRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQ 627 (638)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 003183 368 NQIL 371 (841)
Q Consensus 368 ~~~l 371 (841)
+..+
T Consensus 628 ~~~~ 631 (638)
T PRK10636 628 LEQM 631 (638)
T ss_pred HHHH
No 484
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.77 E-value=6.2e+02 Score=23.52 Aligned_cols=99 Identities=21% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchh------------
Q 003183 226 ELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI------------ 293 (841)
Q Consensus 226 el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~------------ 293 (841)
.+...++ ....+...++.++..+..+....... ..+.....+++..+.+-..+
T Consensus 4 ~~~~~~q-----------~~~~~~q~lq~~l~~~~~q~~~le~q----~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd 68 (121)
T PRK09343 4 NIPPEVQ-----------AQLAQLQQLQQQLERLLQQKSQIDLE----LREINKALEELEKLPDDTPIYKIVGNLLVKVD 68 (121)
T ss_pred hhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCCcchhHHHhhHHHhhcc
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003183 294 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ 339 (841)
Q Consensus 294 ~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~ 339 (841)
-.+....+....+-++.++..++++.+.+++.+.+++....++...
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.62 E-value=9.7e+02 Score=25.70 Aligned_cols=118 Identities=9% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003183 254 SALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 333 (841)
Q Consensus 254 ~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~ 333 (841)
+....+-.++...-+.+...........+.-...-..+..-..--..+......+..++..+++.+..+......++...
T Consensus 120 k~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KI 199 (267)
T PF10234_consen 120 KAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKI 199 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 334 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 334 ~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
++...++...+..+..|+.--=.--++.++++.|++.+
T Consensus 200 ekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 200 EKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
No 486
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=22.33 E-value=4e+02 Score=22.13 Aligned_cols=63 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 306 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQAL-----EAESKIVQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 306 ~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~-----~~e~~~~~L~~e~~~Le~~l~~le~E~ 368 (841)
.+++..+++|+.++....+-.+.+++........-. +++..+.+....++.|+.+|.+++...
T Consensus 5 ~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~~~ 72 (72)
T cd00089 5 SKLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQEL 72 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 487
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=22.23 E-value=29 Score=40.28 Aligned_cols=120 Identities=15% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 197 RRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLE-----------KRMRVDMEEAKTQENAKLQSALQEMQLQFKE 265 (841)
Q Consensus 197 Rr~l~~lk~~a~~~~~l~~~~~~le~kv~el~~~l~~e-----------~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~ 265 (841)
++..+..+.-..|+..||+.+.....+++|.+.+|... +...++-|+..++-..+-..++..+-..+-.
T Consensus 365 ~~~~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~ 444 (495)
T PF12004_consen 365 RESMKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMA 444 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 266 SKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKI 319 (841)
Q Consensus 266 ~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~ 319 (841)
.++++.+|..+.+..++....+-+. .+.++..|...|.+|-.-+..|++++
T Consensus 445 vEeELrre~~~m~~~~~~kqrii~a---Q~~~i~~Ldaan~Rl~sal~~lk~ry 495 (495)
T PF12004_consen 445 VEEELRREHAEMQAVLDHKQRIIDA---QEKRIAALDAANSRLMSALTQLKERY 495 (495)
T ss_dssp ------------------------------------------------------
T ss_pred hhhhhhhhHHHHhcccccchHHHHH---hhhhccccccccccccccccccccCC
No 488
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.22 E-value=9.9e+02 Score=25.64 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 239 VDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKK 318 (841)
Q Consensus 239 ~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~ 318 (841)
.++.+....+....-..++...-.+.=+...+..-.+..+ ..........+++..+..+...+.+
T Consensus 144 ~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e---------------~~~~~~~~e~eke~~~r~l~~~~~E 208 (269)
T PF05278_consen 144 KELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKE---------------IYDQHETREEEKEEKDRKLELKKEE 208 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003183 319 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 376 (841)
Q Consensus 319 ~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~~~ 376 (841)
++.++..+.+.++...++..++.+...++.+++.+-.++...+..++...+....+++
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~sl 266 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKSL 266 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
No 489
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=22.19 E-value=5.8e+02 Score=29.26 Aligned_cols=69 Identities=23% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 303 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ----ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 303 ~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~----l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.+...+..+..++..+++++..+...+-+......+. ..++.++...+++++..++.++..++++...+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.12 E-value=5.4e+02 Score=27.05 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le 365 (841)
.+..|..|...|+..+.+--+.+-+-++++.+++...+....--+.-.+.++.|+.++++.-.++..|.
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 491
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.86 E-value=6e+02 Score=24.55 Aligned_cols=74 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 302 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 375 (841)
Q Consensus 302 ~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~~ 375 (841)
.++-..++.-.++...+..++..++-.-..+...+...-.--+.++..|..|+.+|+.++..+..+.+..-.+.
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEA 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 492
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=21.58 E-value=2.5e+02 Score=23.99 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 003183 629 DSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSY 669 (841)
Q Consensus 629 ~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~ 669 (841)
+.+.+.+..--.++..+.......|++|..+.++|..++..
T Consensus 37 g~~i~d~~RE~~v~~~~~~~~~~~~l~~~~i~~if~~i~~~ 77 (83)
T TIGR01791 37 GLPITDEEREERVIERLRNTARNLGLDVLKLKEIFEILMSL 77 (83)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
No 493
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.54 E-value=3.1e+02 Score=21.69 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 223 QVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE 268 (841)
Q Consensus 223 kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~ 268 (841)
++.+|..++..|+.-+.--......++.+|..+...|..+++-...
T Consensus 5 Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
No 494
>PLN02943 aminoacyl-tRNA ligase
Probab=21.42 E-value=2.3e+02 Score=36.31 Aligned_cols=66 Identities=9% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 366 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~ 366 (841)
..+|..+|+.+++.++++++.+++++..-.=....-........+++.+++++++.+++.+..+.+
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 495
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.39 E-value=2.5e+02 Score=23.43 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 332 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 375 (841)
Q Consensus 332 ~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~~ 375 (841)
....+..++.+++.++..++.+.++|+.+++.++...+.+.+-|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~A 61 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVA 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
No 496
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.31 E-value=2.9e+02 Score=29.55 Aligned_cols=71 Identities=17% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK----------QALEAESKIVQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~----------~l~~~e~~~~~L~~e~~~Le~~l~~l 364 (841)
.+++..|......+...++.++.++.+.+.+++........... .....++.+..=++++..|+.++.+|
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred H
Q 003183 365 E 365 (841)
Q Consensus 365 e 365 (841)
+
T Consensus 259 q 259 (259)
T PF08657_consen 259 Q 259 (259)
T ss_pred C
No 497
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=21.23 E-value=5.8e+02 Score=22.57 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL-----KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~-----~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+....+.......+......+..+.....+......... ..+.....-+..+...+..++..+..++.+....+.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.16 E-value=7.6e+02 Score=23.92 Aligned_cols=125 Identities=19% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 003183 210 TGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQE 289 (841)
Q Consensus 210 ~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e 289 (841)
...+++.-+.+|.+..+...++. ...-...+-..++..+...++....-..++.+...+
T Consensus 33 ls~f~AkEeeIErkKmeVrekVq-----------~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRk---------- 91 (159)
T PF04949_consen 33 LSAFRAKEEEIERKKMEVREKVQ-----------AQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRK---------- 91 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH----------
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 003183 290 VPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLK-TAMHRLEEKVS 362 (841)
Q Consensus 290 ~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~-~e~~~Le~~l~ 362 (841)
+++....+..-|-.-...-++++.+.-....+..+++..+...|.++-..-..++ ..+++|...+.
T Consensus 92 -------kID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~ie 158 (159)
T PF04949_consen 92 -------KIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEIE 158 (159)
T ss_pred -------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 499
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.83 E-value=1.4e+03 Score=26.96 Aligned_cols=170 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 003183 160 ASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKL----EKQVEELTWRLQLEK 235 (841)
Q Consensus 160 aA~~IQ~~~R~~~~r~~~~~~~~a~~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~l----e~kv~el~~~l~~e~ 235 (841)
....+-..+....++.........+..+..-.................+++...+...+.. ++++.+.+.+++...
T Consensus 10 iG~~ig~~~ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRe 89 (514)
T TIGR03319 10 VGLIIGYLLRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQRE 89 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 003183 236 R---MRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLV 312 (841)
Q Consensus 236 ~---~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l 312 (841)
. .+.+.-+.+.++....+.+++..+.++++...+......+....++....+.. ++.+-.-+..-..+++.+.
T Consensus 90 e~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~----~eak~~l~~~~~~~~~~~~ 165 (514)
T TIGR03319 90 ETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQ----EEAKEILLEEVEEEARHEA 165 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q 003183 313 SSLEKKIDETEKKFEETSKIS 333 (841)
Q Consensus 313 ~~l~~~~~e~e~~~~e~~~~~ 333 (841)
..+-..+++.-+...+-+...
T Consensus 166 ~~~~~~~~~~~~~~a~~~a~~ 186 (514)
T TIGR03319 166 AKLIKEIEEEAKEEADKKAKE 186 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 500
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.53 E-value=1.9e+02 Score=22.02 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ 339 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~ 339 (841)
......++-|++..+..+++++++..++.++++.+..+..+
T Consensus 1 Sd~~EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 1 SDRAEAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp --------------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Done!