Query 003183
Match_columns 841
No_of_seqs 487 out of 2772
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:17:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6h_X Myosin-2, type V myosin 100.0 9E-63 3.1E-67 552.7 32.4 328 457-830 47-403 (419)
2 3mmi_A Myosin-4; globular tail 100.0 3.2E-57 1.1E-61 488.9 22.4 287 459-803 53-352 (386)
3 2dfs_A Myosin-5A; myosin-V, in 100.0 1.5E-47 5.2E-52 472.9 37.2 265 1-265 700-971 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 99.9 1.6E-22 5.4E-27 250.2 32.5 143 42-188 771-917 (1080)
5 1i84_S Smooth muscle myosin he 99.9 1.9E-23 6.6E-28 264.0 19.1 105 1-105 722-838 (1184)
6 1kk8_A Myosin heavy chain, str 99.8 1.5E-18 5.2E-23 208.2 12.2 107 1-107 709-827 (837)
7 4anj_A Unconventional myosin-V 99.6 5.1E-16 1.8E-20 189.8 9.9 102 1-103 707-815 (1052)
8 1w7j_A Myosin VA; motor protei 99.6 1.8E-15 6.1E-20 180.8 9.7 88 1-88 700-794 (795)
9 1g8x_A Myosin II heavy chain f 99.4 2.4E-12 8.2E-17 158.2 18.0 107 1-123 694-808 (1010)
10 2ycu_A Non muscle myosin 2C, a 99.4 1.6E-14 5.4E-19 177.6 -2.0 64 1-64 689-761 (995)
11 2ix7_C Myosin-5A; contractIle 99.2 1.4E-11 4.8E-16 98.5 6.6 56 59-114 2-57 (58)
12 1i84_S Smooth muscle myosin he 99.2 1.6E-10 5.6E-15 146.2 16.0 55 76-130 783-838 (1184)
13 2ix7_C Myosin-5A; contractIle 99.0 7.4E-10 2.5E-14 88.4 7.4 53 110-162 5-57 (58)
14 2v26_A Myosin VI; calmodulin-b 99.0 3E-10 1E-14 135.9 5.6 75 1-76 703-784 (784)
15 1n2d_C IQ2 and IQ3 motifs from 98.9 1E-09 3.5E-14 84.0 5.7 46 84-129 2-47 (48)
16 1n2d_C IQ2 and IQ3 motifs from 98.8 8.5E-09 2.9E-13 78.8 6.7 46 132-177 2-47 (48)
17 4db1_A Myosin-7; S1DC, cardiac 98.7 1.6E-09 5.4E-14 129.2 0.3 62 1-62 711-782 (783)
18 1w9i_A Myosin II heavy chain; 98.7 1.3E-09 4.4E-14 129.6 -2.0 66 1-66 694-767 (770)
19 1lkx_A Myosin IE heavy chain; 98.6 5.6E-09 1.9E-13 123.3 2.2 61 1-61 626-696 (697)
20 1wdc_A Scallop myosin; calcium 98.0 7.9E-06 2.7E-10 66.2 5.5 47 57-103 1-50 (64)
21 2bl0_A Major plasmodial myosin 97.8 2.9E-05 9.9E-10 62.6 5.3 41 61-101 3-46 (63)
22 1wdc_A Scallop myosin; calcium 97.7 4.9E-05 1.7E-09 61.5 5.7 46 84-129 5-51 (64)
23 2bl0_A Major plasmodial myosin 97.7 4E-05 1.4E-09 61.8 4.8 46 84-129 3-49 (63)
24 2v71_A Nuclear distribution pr 97.5 0.014 4.8E-07 56.9 20.4 49 298-346 90-138 (189)
25 1kk8_A Myosin heavy chain, str 97.2 0.0003 1E-08 84.8 7.1 48 82-129 776-824 (837)
26 3na7_A HP0958; flagellar bioge 96.6 0.44 1.5E-05 49.3 23.9 45 297-341 91-135 (256)
27 3vkg_A Dynein heavy chain, cyt 96.5 0.52 1.8E-05 64.4 29.5 29 343-371 2075-2103(3245)
28 3o0z_A RHO-associated protein 96.3 0.12 4E-06 49.2 15.2 13 220-232 11-23 (168)
29 3gn4_A Myosin-VI; unconvention 95.9 0.09 3.1E-06 49.0 12.2 58 118-183 13-70 (148)
30 2fxo_A Myosin heavy chain, car 95.4 0.35 1.2E-05 44.5 14.4 54 297-357 70-123 (129)
31 3oja_B Anopheles plasmodium-re 95.3 0.14 4.8E-06 59.8 14.5 73 301-373 507-579 (597)
32 3vkg_A Dynein heavy chain, cyt 95.1 5.4 0.00019 54.8 30.1 73 297-369 2015-2087(3245)
33 3gn4_A Myosin-VI; unconvention 94.7 0.16 5.5E-06 47.3 9.8 54 70-131 13-66 (148)
34 3oja_B Anopheles plasmodium-re 94.7 0.79 2.7E-05 53.4 18.4 72 299-370 512-583 (597)
35 2fxo_A Myosin heavy chain, car 94.6 2.6 8.9E-05 38.6 19.9 18 350-367 102-119 (129)
36 3na7_A HP0958; flagellar bioge 94.4 5.2 0.00018 41.1 25.5 44 297-340 98-141 (256)
37 2ocy_A RAB guanine nucleotide 94.2 2.3 7.9E-05 39.9 16.6 38 321-358 105-142 (154)
38 2kxw_B Sodium channel protein 94.0 0.027 9.1E-07 36.7 2.1 20 108-127 4-23 (27)
39 2l53_B CAM, voltage-gated sodi 93.9 0.042 1.4E-06 36.9 2.9 21 108-128 4-24 (31)
40 2v71_A Nuclear distribution pr 93.8 5.3 0.00018 38.8 24.2 19 352-370 161-179 (189)
41 3hnw_A Uncharacterized protein 93.5 0.76 2.6E-05 42.6 11.9 68 303-370 68-135 (138)
42 2v66_B Nuclear distribution pr 92.6 5.2 0.00018 35.4 17.6 66 297-362 36-101 (111)
43 2kxw_B Sodium channel protein 92.5 0.086 2.9E-06 34.3 2.7 20 156-175 4-23 (27)
44 3swk_A Vimentin; cytoskeleton, 92.4 1.6 5.6E-05 36.9 11.4 78 296-373 7-84 (86)
45 2l53_B CAM, voltage-gated sodi 92.3 0.14 4.6E-06 34.4 3.6 21 156-176 4-24 (31)
46 3ol1_A Vimentin; structural ge 91.8 3.1 0.00011 37.5 13.2 74 298-371 29-102 (119)
47 3bas_A Myosin heavy chain, str 91.2 3.8 0.00013 34.9 12.5 74 295-368 13-86 (89)
48 2a2f_X Exocyst complex compone 90.9 2.6 8.9E-05 45.0 13.9 101 629-732 215-319 (325)
49 2efr_A General control protein 90.8 11 0.00037 35.4 21.7 18 303-320 98-115 (155)
50 4anj_A Unconventional myosin-V 90.3 0.37 1.3E-05 59.4 7.4 41 110-151 775-815 (1052)
51 3oja_A Leucine-rich immune mol 89.8 4.9 0.00017 45.3 16.0 10 304-313 450-459 (487)
52 3a7p_A Autophagy protein 16; c 89.6 4 0.00014 37.9 11.9 36 337-372 95-130 (152)
53 2i1j_A Moesin; FERM, coiled-co 89.1 0.45 1.5E-05 55.1 6.6 16 18-33 24-39 (575)
54 3oja_A Leucine-rich immune mol 88.7 9.4 0.00032 42.9 17.3 29 308-336 433-461 (487)
55 1x79_B RAB GTPase binding effe 87.9 11 0.00036 33.4 12.9 68 302-372 37-104 (112)
56 3hnw_A Uncharacterized protein 87.6 4.4 0.00015 37.5 11.0 14 346-359 118-131 (138)
57 1ic2_A Tropomyosin alpha chain 86.1 12 0.00041 31.1 12.0 28 340-367 43-70 (81)
58 3ol1_A Vimentin; structural ge 86.0 19 0.00064 32.3 14.4 13 349-361 87-99 (119)
59 2jee_A YIIU; FTSZ, septum, coi 85.5 14 0.00048 30.6 11.5 16 346-361 56-71 (81)
60 2w83_C C-JUN-amino-terminal ki 85.4 6.2 0.00021 32.0 9.1 46 297-342 10-55 (77)
61 1wt6_A Myotonin-protein kinase 85.1 6.6 0.00023 32.3 9.3 41 325-365 32-72 (81)
62 3ghg_A Fibrinogen alpha chain; 84.9 12 0.0004 41.6 14.2 21 349-369 135-155 (562)
63 2e7s_A RAB guanine nucleotide 84.9 8.4 0.00029 35.2 11.0 16 221-236 45-60 (135)
64 2ocy_A RAB guanine nucleotide 84.8 26 0.00088 32.8 17.5 12 224-235 60-71 (154)
65 3mq7_A Bone marrow stromal ant 84.2 21 0.00072 31.4 12.7 32 340-371 73-104 (121)
66 3cve_A Homer protein homolog 1 83.6 14 0.00048 29.9 10.5 35 295-329 6-40 (72)
67 2oqq_A Transcription factor HY 82.7 3.6 0.00012 29.2 5.8 33 341-373 6-38 (42)
68 2v66_B Nuclear distribution pr 82.6 25 0.00086 31.0 16.9 30 308-337 40-69 (111)
69 1ic2_A Tropomyosin alpha chain 82.5 19 0.00063 29.9 11.5 24 344-367 40-63 (81)
70 3cvf_A Homer-3, homer protein 81.0 16 0.00055 30.1 10.2 36 295-330 12-47 (79)
71 2eqb_B RAB guanine nucleotide 80.8 26 0.00089 30.0 13.3 37 300-336 16-52 (97)
72 2e7s_A RAB guanine nucleotide 80.6 3.8 0.00013 37.4 7.0 12 304-315 68-79 (135)
73 3tnu_B Keratin, type II cytosk 79.8 27 0.00091 31.7 12.7 72 297-371 37-108 (129)
74 1x79_B RAB GTPase binding effe 78.8 34 0.0012 30.2 12.4 48 220-267 11-58 (112)
75 2b9c_A Striated-muscle alpha t 78.7 12 0.00041 34.9 10.0 61 295-355 51-111 (147)
76 3fhn_A Protein transport prote 78.6 22 0.00076 41.6 14.4 98 631-733 561-658 (706)
77 3qh9_A Liprin-beta-2; coiled-c 78.0 27 0.00094 28.6 10.6 47 321-367 30-76 (81)
78 2i1j_A Moesin; FERM, coiled-co 77.8 4.9 0.00017 46.4 8.7 22 250-271 338-359 (575)
79 4h22_A Leucine-rich repeat fli 77.7 25 0.00086 30.3 10.7 60 299-358 19-78 (103)
80 1go4_E MAD1 (mitotic arrest de 77.1 7 0.00024 33.8 7.2 32 296-327 12-43 (100)
81 3swk_A Vimentin; cytoskeleton, 77.1 21 0.00073 30.0 10.2 63 300-362 18-80 (86)
82 3s4r_A Vimentin; alpha-helix, 76.6 35 0.0012 29.1 11.7 69 296-373 23-91 (93)
83 2w83_C C-JUN-amino-terminal ki 76.5 28 0.00096 28.2 10.0 17 302-318 8-24 (77)
84 3cvf_A Homer-3, homer protein 76.2 13 0.00043 30.8 8.2 53 321-373 17-69 (79)
85 3q8t_A Beclin-1; autophagy, AT 76.0 37 0.0013 29.1 14.3 68 297-364 26-93 (96)
86 4gkw_A Spindle assembly abnorm 75.4 45 0.0015 29.8 17.9 16 250-265 14-29 (167)
87 1w7j_A Myosin VA; motor protei 75.1 2.1 7E-05 51.4 4.6 27 110-136 768-794 (795)
88 3tnu_A Keratin, type I cytoske 74.9 28 0.00094 31.7 11.3 69 300-371 42-110 (131)
89 2w6a_A ARF GTPase-activating p 74.6 17 0.00058 27.9 7.7 26 348-373 37-62 (63)
90 3s9g_A Protein hexim1; cyclin 72.7 35 0.0012 29.0 10.1 26 345-370 65-90 (104)
91 2eqb_B RAB guanine nucleotide 72.2 46 0.0016 28.5 15.3 47 213-263 17-63 (97)
92 3mq9_A Bone marrow stromal ant 71.9 65 0.0022 35.7 16.0 27 345-371 443-469 (471)
93 3cve_A Homer protein homolog 1 71.6 39 0.0013 27.3 10.9 53 321-373 11-63 (72)
94 3a7p_A Autophagy protein 16; c 71.2 52 0.0018 30.5 11.9 52 207-269 67-118 (152)
95 1fxk_A Prefoldin; archaeal pro 70.4 52 0.0018 28.3 12.6 30 344-373 71-100 (107)
96 3nmd_A CGMP dependent protein 70.3 13 0.00044 30.1 6.7 33 340-372 35-67 (72)
97 3ghg_A Fibrinogen alpha chain; 70.0 60 0.0021 36.1 14.1 24 338-361 131-154 (562)
98 3q8t_A Beclin-1; autophagy, AT 69.8 52 0.0018 28.2 13.1 38 299-336 7-44 (96)
99 2fji_1 Exocyst complex compone 69.5 1E+02 0.0035 33.5 16.5 121 634-760 219-349 (399)
100 2zqm_A Prefoldin beta subunit 67.2 65 0.0022 28.2 13.1 29 345-373 77-105 (117)
101 3bas_A Myosin heavy chain, str 66.2 59 0.002 27.4 11.8 24 305-328 16-39 (89)
102 4gkw_A Spindle assembly abnorm 66.0 74 0.0025 28.4 19.9 23 247-269 60-82 (167)
103 4dck_A Sodium channel protein 65.0 5.1 0.00018 38.2 4.1 25 107-131 127-151 (168)
104 1t2k_D Cyclic-AMP-dependent tr 64.5 45 0.0016 25.8 8.9 35 340-374 24-58 (61)
105 3a7o_A Autophagy protein 16; c 63.6 54 0.0019 26.0 9.0 20 354-373 48-67 (75)
106 4dck_A Sodium channel protein 61.5 8.2 0.00028 36.8 4.7 24 156-179 128-151 (168)
107 1l8d_A DNA double-strand break 60.8 84 0.0029 27.3 12.6 30 344-373 70-99 (112)
108 2b9c_A Striated-muscle alpha t 59.2 1.1E+02 0.0038 28.3 15.9 40 297-336 74-113 (147)
109 3u1c_A Tropomyosin alpha-1 cha 58.7 89 0.003 26.9 16.1 15 343-357 84-98 (101)
110 3s9g_A Protein hexim1; cyclin 58.0 68 0.0023 27.3 9.0 26 350-375 63-88 (104)
111 1ci6_A Transcription factor AT 57.9 42 0.0014 26.3 7.6 34 340-373 25-58 (63)
112 2ycu_A Non muscle myosin 2C, a 57.5 3.2 0.00011 51.1 1.5 42 137-180 768-809 (995)
113 1deq_A Fibrinogen (alpha chain 57.4 1.6E+02 0.0053 31.5 13.9 10 254-263 67-76 (390)
114 3mq9_A Bone marrow stromal ant 56.3 2.1E+02 0.007 31.5 16.2 8 3-10 141-148 (471)
115 1l8d_A DNA double-strand break 55.8 1E+02 0.0035 26.7 12.1 33 337-369 70-102 (112)
116 3i00_A HIP-I, huntingtin-inter 55.0 84 0.0029 28.1 10.0 15 250-264 43-57 (120)
117 3iv1_A Tumor susceptibility ge 54.6 88 0.003 25.6 10.2 19 349-367 50-68 (78)
118 3tnu_B Keratin, type II cytosk 54.4 1.2E+02 0.0042 27.2 12.3 18 250-267 78-95 (129)
119 1go4_E MAD1 (mitotic arrest de 54.3 53 0.0018 28.3 8.1 16 347-362 77-92 (100)
120 3m9b_A Proteasome-associated A 53.8 12 0.00042 37.8 4.7 40 334-373 57-96 (251)
121 3tnu_A Keratin, type I cytoske 53.8 1.3E+02 0.0043 27.2 11.4 18 250-267 80-97 (131)
122 1m1j_B Fibrinogen beta chain; 52.8 2.7E+02 0.0093 30.8 15.8 14 501-516 293-306 (464)
123 3i00_A HIP-I, huntingtin-inter 52.8 1.2E+02 0.0042 27.0 10.7 19 297-315 16-34 (120)
124 3qh9_A Liprin-beta-2; coiled-c 52.5 96 0.0033 25.5 9.7 50 301-350 24-73 (81)
125 2zqm_A Prefoldin beta subunit 52.2 1.2E+02 0.004 26.4 12.7 38 335-372 74-111 (117)
126 2k48_A Nucleoprotein; viral pr 52.2 1.1E+02 0.0038 26.3 9.6 25 248-272 36-60 (107)
127 1gu4_A CAAT/enhancer binding p 51.5 76 0.0026 26.1 8.3 33 341-373 39-71 (78)
128 1hjb_A Ccaat/enhancer binding 51.3 77 0.0026 26.6 8.5 32 342-373 40-71 (87)
129 3hr0_A COG4; conserved oligome 50.8 2.2E+02 0.0074 29.0 16.8 169 578-762 78-250 (263)
130 1ik9_A DNA repair protein XRCC 50.8 1.6E+02 0.0056 28.9 12.4 42 298-339 134-175 (213)
131 3htk_A Structural maintenance 50.7 81 0.0028 24.1 8.5 22 345-366 33-54 (60)
132 2v4h_A NF-kappa-B essential mo 50.4 1.3E+02 0.0044 26.3 11.1 19 350-368 88-106 (110)
133 1gk4_A Vimentin; intermediate 50.1 1.1E+02 0.0037 25.4 10.0 30 342-371 30-59 (84)
134 3efg_A Protein SLYX homolog; x 49.8 39 0.0013 27.8 6.4 30 344-373 27-56 (78)
135 2yy0_A C-MYC-binding protein; 49.7 27 0.00091 26.5 5.0 32 296-327 19-50 (53)
136 1m1j_B Fibrinogen beta chain; 49.6 3.1E+02 0.01 30.4 17.2 30 344-373 167-196 (464)
137 3mq7_A Bone marrow stromal ant 49.2 1.4E+02 0.0047 26.3 12.6 30 345-374 71-100 (121)
138 1fxk_C Protein (prefoldin); ar 47.7 1.5E+02 0.0053 26.4 12.8 36 338-373 95-130 (133)
139 1gd2_E Transcription factor PA 46.5 33 0.0011 27.6 5.3 24 347-370 45-68 (70)
140 2wt7_A Proto-oncogene protein 46.2 1E+02 0.0035 24.0 8.9 34 340-373 25-58 (63)
141 1jnm_A Proto-oncogene C-JUN; B 45.8 57 0.002 25.4 6.6 34 340-373 24-57 (62)
142 2xdj_A Uncharacterized protein 45.3 1.2E+02 0.0042 25.1 8.8 32 342-373 24-55 (83)
143 1g8x_A Myosin II heavy chain f 45.1 4.4E+02 0.015 32.3 17.6 29 118-146 780-808 (1010)
144 3he5_B Synzip2; heterodimeric 45.0 80 0.0027 22.4 6.7 11 348-358 34-44 (52)
145 1jnm_A Proto-oncogene C-JUN; B 44.7 94 0.0032 24.1 7.7 12 217-228 24-35 (62)
146 1f5n_A Interferon-induced guan 44.1 1.5E+02 0.0051 34.1 12.5 6 346-351 575-580 (592)
147 1wle_A Seryl-tRNA synthetase; 43.9 1.2E+02 0.0042 34.0 11.5 28 752-780 441-468 (501)
148 3u06_A Protein claret segregat 43.6 47 0.0016 36.4 7.9 14 693-706 332-345 (412)
149 3m91_A Proteasome-associated A 43.0 98 0.0033 23.2 7.0 23 348-370 26-48 (51)
150 2ke4_A CDC42-interacting prote 42.9 1.4E+02 0.0049 25.5 9.1 68 305-372 17-89 (98)
151 2xnx_M M protein, M1-BC1; cell 41.9 73 0.0025 29.2 7.4 17 355-371 90-106 (146)
152 1fxk_A Prefoldin; archaeal pro 41.5 1.7E+02 0.0056 25.0 12.4 30 339-368 73-102 (107)
153 3qne_A Seryl-tRNA synthetase, 41.5 1.2E+02 0.004 34.0 10.7 72 296-371 33-104 (485)
154 3iox_A AGI/II, PA; alpha helix 41.3 4.1E+02 0.014 29.4 15.5 26 347-372 82-107 (497)
155 3nmd_A CGMP dependent protein 41.2 80 0.0027 25.5 6.7 10 353-362 55-64 (72)
156 1deq_A Fibrinogen (alpha chain 41.0 3.6E+02 0.012 28.8 14.6 13 220-232 65-77 (390)
157 3vmx_A Voltage-gated hydrogen 40.7 1.1E+02 0.0037 22.6 6.8 8 346-353 26-33 (48)
158 2ast_A S-phase kinase-associat 40.7 22 0.00074 33.5 4.1 44 715-760 95-139 (159)
159 2dq0_A Seryl-tRNA synthetase; 39.9 1.1E+02 0.0037 34.0 10.2 72 296-371 31-102 (455)
160 1gmj_A ATPase inhibitor; coile 39.8 1.1E+02 0.0038 25.4 7.5 13 350-362 63-75 (84)
161 1uii_A Geminin; human, DNA rep 39.3 1.2E+02 0.0041 25.1 7.6 29 345-373 46-74 (83)
162 1dip_A Delta-sleep-inducing pe 39.1 21 0.00073 28.6 3.0 28 346-373 16-43 (78)
163 4etp_A Kinesin-like protein KA 39.0 68 0.0023 35.0 8.3 22 352-373 38-59 (403)
164 1wt6_A Myotonin-protein kinase 38.5 1.6E+02 0.0056 24.1 10.2 32 341-372 41-72 (81)
165 1wlq_A Geminin; coiled-coil; 2 37.6 1E+02 0.0035 25.5 6.9 29 345-373 38-66 (83)
166 3c9i_A Tail needle protein GP2 37.4 2.9E+02 0.01 26.7 13.6 75 305-379 79-153 (242)
167 2k48_A Nucleoprotein; viral pr 36.9 2E+02 0.007 24.7 10.5 33 295-327 34-66 (107)
168 1x8y_A Lamin A/C; structural p 36.5 1E+02 0.0035 25.7 7.1 26 344-369 34-59 (86)
169 1m1j_C Fibrinogen gamma chain; 36.2 4.5E+02 0.015 28.5 14.3 29 345-373 105-133 (409)
170 4h22_A Leucine-rich repeat fli 36.1 2.1E+02 0.0072 24.7 11.0 67 297-363 10-76 (103)
171 1m1j_A Fibrinogen alpha subuni 35.8 4.7E+02 0.016 28.6 14.5 24 347-370 134-157 (491)
172 1m1j_C Fibrinogen gamma chain; 34.7 4.8E+02 0.016 28.3 15.2 8 501-508 223-230 (409)
173 3lss_A Seryl-tRNA synthetase; 34.7 1.7E+02 0.0059 32.6 10.7 35 296-330 37-71 (484)
174 1ses_A Seryl-tRNA synthetase; 34.5 1.4E+02 0.0047 32.8 9.9 70 296-371 28-97 (421)
175 3n1e_A Vacuolar protein sortin 34.4 2E+02 0.007 26.3 9.3 74 583-673 18-91 (141)
176 4emc_A Monopolin complex subun 34.2 1.1E+02 0.0037 29.4 7.6 28 297-324 21-48 (190)
177 3efg_A Protein SLYX homolog; x 33.5 1.1E+02 0.0039 25.0 6.7 17 346-362 43-59 (78)
178 2yy0_A C-MYC-binding protein; 33.1 74 0.0025 24.0 5.1 24 304-327 20-43 (53)
179 2v4h_A NF-kappa-B essential mo 32.9 2.5E+02 0.0084 24.5 13.0 20 355-374 86-105 (110)
180 4etp_A Kinesin-like protein KA 32.8 97 0.0033 33.8 8.2 11 639-649 327-337 (403)
181 4dzn_A Coiled-coil peptide CC- 32.2 1E+02 0.0035 19.9 4.8 27 347-373 4-30 (33)
182 3iv1_A Tumor susceptibility ge 31.8 2.1E+02 0.0072 23.4 10.2 24 341-364 49-72 (78)
183 4fi5_A Nucleoprotein; structur 31.1 2.7E+02 0.0091 24.3 9.2 24 249-272 24-47 (113)
184 2ke4_A CDC42-interacting prote 30.3 2.6E+02 0.0088 23.9 11.5 73 249-323 17-89 (98)
185 1wle_A Seryl-tRNA synthetase; 29.8 2.9E+02 0.0098 31.0 11.6 76 296-371 70-149 (501)
186 3dvk_B Voltage-dependent R-typ 29.6 24 0.00082 21.9 1.4 16 111-126 7-22 (23)
187 1kd8_A GABH AIV, GCN4 acid bas 29.5 1.3E+02 0.0045 20.6 5.1 22 345-366 8-29 (36)
188 3qne_A Seryl-tRNA synthetase, 29.4 2.5E+02 0.0084 31.4 10.8 28 347-374 73-100 (485)
189 1f5n_A Interferon-induced guan 29.1 6.9E+02 0.024 28.5 14.9 7 23-29 269-275 (592)
190 2w6a_A ARF GTPase-activating p 28.8 2E+02 0.0067 22.1 8.2 33 341-373 23-55 (63)
191 3m9b_A Proteasome-associated A 28.5 47 0.0016 33.6 4.2 35 340-374 56-90 (251)
192 2ic6_A Nucleocapsid protein; h 27.9 2.5E+02 0.0085 23.0 9.4 24 249-272 7-30 (78)
193 1kd8_A GABH AIV, GCN4 acid bas 27.9 1.3E+02 0.0044 20.6 4.9 23 296-318 8-30 (36)
194 1ci6_A Transcription factor AT 27.7 1.7E+02 0.0057 22.8 6.6 13 301-313 35-47 (63)
195 2yko_A LINE-1 ORF1P; RNA-bindi 27.5 1.2E+02 0.0041 30.3 6.9 18 312-329 8-25 (233)
196 2wq1_A General control protein 27.2 1.3E+02 0.0043 20.3 4.6 16 346-361 8-23 (33)
197 3trt_A Vimentin; cytoskeleton, 27.2 2.4E+02 0.0082 22.6 10.1 27 346-372 50-76 (77)
198 3etw_A Adhesin A; antiparallel 27.0 3.3E+02 0.011 24.1 15.1 7 352-358 89-95 (119)
199 3jsv_C NF-kappa-B essential mo 26.8 2.9E+02 0.0099 23.4 9.0 79 295-373 8-89 (94)
200 3mov_A Lamin-B1; LMNB1, B-type 26.8 1.5E+02 0.0051 25.2 6.6 14 348-361 47-60 (95)
201 4emc_A Monopolin complex subun 26.5 4E+02 0.014 25.5 10.1 30 338-367 34-63 (190)
202 1x8y_A Lamin A/C; structural p 26.1 2.8E+02 0.0096 22.9 9.3 23 210-232 5-27 (86)
203 4e61_A Protein BIM1; EB1-like 25.4 3.3E+02 0.011 23.6 9.2 43 300-342 8-50 (106)
204 1t2k_D Cyclic-AMP-dependent tr 25.2 2.3E+02 0.0079 21.7 9.8 10 218-227 25-34 (61)
205 3c3f_A Alpha/beta peptide with 25.1 1.1E+02 0.0037 20.7 4.0 9 353-361 16-24 (34)
206 2lw1_A ABC transporter ATP-bin 24.9 3E+02 0.01 22.8 10.5 28 295-322 55-82 (89)
207 2wvr_A Geminin; DNA replicatio 24.7 2E+02 0.0068 27.9 7.6 23 349-371 119-141 (209)
208 2dq0_A Seryl-tRNA synthetase; 24.4 2.9E+02 0.01 30.5 10.4 28 347-374 71-98 (455)
209 3c3g_A Alpha/beta peptide with 24.4 1.5E+02 0.0052 19.9 4.6 9 353-361 15-23 (33)
210 3trt_A Vimentin; cytoskeleton, 24.2 2.7E+02 0.0094 22.2 10.4 28 338-365 49-76 (77)
211 3mov_A Lamin-B1; LMNB1, B-type 24.1 1.5E+02 0.0053 25.2 6.2 22 211-232 15-36 (95)
212 2zxx_A Geminin; coiled-coil, c 24.1 2.1E+02 0.0071 23.5 6.5 25 347-371 36-60 (79)
213 2ic9_A Nucleocapsid protein; h 24.0 3.3E+02 0.011 23.1 9.2 24 249-272 7-30 (96)
214 1fs1_B SKP1, cyclin A/CDK2-ass 23.8 57 0.002 29.8 3.7 90 653-760 43-134 (141)
215 2yko_A LINE-1 ORF1P; RNA-bindi 23.4 1.4E+02 0.0048 29.8 6.5 44 314-357 3-46 (233)
216 2dq3_A Seryl-tRNA synthetase; 23.2 1.1E+02 0.0038 33.5 6.6 73 296-372 30-102 (425)
217 3uux_B Mitochondrial division 23.2 5.7E+02 0.019 25.5 11.0 58 300-357 160-217 (242)
218 2l5g_A GPS2 protein, G protein 23.1 1.9E+02 0.0065 20.0 5.1 23 349-371 12-34 (38)
219 3gcg_B MAP, L0028 (mitochondri 23.1 4E+02 0.014 25.1 9.1 95 572-679 50-147 (172)
220 2w6b_A RHO guanine nucleotide 23.1 2.5E+02 0.0084 21.2 7.4 34 299-332 13-46 (56)
221 1lwu_C Fibrinogen gamma chain; 22.9 1.8E+02 0.006 30.7 7.7 29 345-373 26-54 (323)
222 1gd2_E Transcription factor PA 22.4 3E+02 0.01 22.0 9.1 17 247-263 50-66 (70)
223 3ra3_B P2F; coiled coil domain 22.3 76 0.0026 19.7 2.7 21 300-320 4-24 (28)
224 1uo4_A General control protein 22.1 1.6E+02 0.0055 19.9 4.5 8 353-360 16-23 (34)
225 1m45_B IQ2, IQ2 motif from MYO 22.0 1E+02 0.0036 18.8 3.2 18 63-80 4-21 (26)
226 4fi5_A Nucleoprotein; structur 21.8 4E+02 0.014 23.2 10.1 57 212-268 26-90 (113)
227 3c9i_A Tail needle protein GP2 21.7 5.5E+02 0.019 24.8 11.1 68 297-371 85-152 (242)
228 1j7q_A CAVP, calcium vector pr 21.6 2.9E+02 0.01 21.6 7.9 67 717-785 11-83 (86)
229 4dk0_A Putative MACA; alpha-ha 21.5 6.1E+02 0.021 26.3 12.2 33 341-373 118-150 (369)
230 2zdi_C Prefoldin subunit alpha 21.4 4.6E+02 0.016 23.8 10.0 36 338-373 105-140 (151)
231 2z5i_A TM, general control pro 21.4 2.3E+02 0.0079 21.2 5.9 29 341-369 8-36 (52)
232 1lwu_C Fibrinogen gamma chain; 21.2 2.2E+02 0.0076 29.9 8.0 8 501-508 145-152 (323)
233 2lw1_A ABC transporter ATP-bin 21.1 3.5E+02 0.012 22.3 9.3 23 304-326 23-45 (89)
234 2ic6_A Nucleocapsid protein; h 21.0 3.4E+02 0.012 22.1 9.9 57 211-267 8-72 (78)
235 1hjb_A Ccaat/enhancer binding 21.0 3.6E+02 0.012 22.4 8.5 28 341-368 46-73 (87)
236 1lq7_A Alpha3W; three helix bu 20.6 1.4E+02 0.0048 22.2 4.4 60 305-364 4-67 (67)
237 1gmj_A ATPase inhibitor; coile 20.5 3.7E+02 0.013 22.3 7.5 25 347-371 53-77 (84)
238 1a92_A Delta antigen; leucine 20.2 2.4E+02 0.0083 20.7 5.4 21 348-368 17-37 (50)
239 3vmx_A Voltage-gated hydrogen 20.2 2.7E+02 0.0091 20.5 6.5 28 345-372 11-38 (48)
240 1gk4_A Vimentin; intermediate 20.0 3.7E+02 0.012 22.1 12.5 23 210-232 3-25 (84)
No 1
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-63 Score=552.74 Aligned_cols=328 Identities=16% Similarity=0.271 Sum_probs=267.0
Q ss_pred CcchHHHHHHHHh-hccc-chhhhhhHHHHHHHHHHHHHhcc--CC-CcchhHHHhhHHHHHHHH--HHhhhhcCCCCCC
Q 003183 457 KPVAAFTIYKCLL-HWKS-FEAERTSVFDRLIQMIGSAIENE--DD-NDHMAYWLSNTSTLLFLL--QRSLKAAGASGAT 529 (841)
Q Consensus 457 ~p~pA~il~~c~~-~~~~-~~~e~~~ll~~ii~~I~~~i~~~--~d-~~~l~fWLsN~~~Ll~~l--q~~~~~~~~~~~~ 529 (841)
+.+|||+||+|++ ||+. +..+.+.+|++|+++|+.+++++ +| ++.++|||||+++||||| +++....+.
T Consensus 47 ~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~~~---- 122 (419)
T 2f6h_X 47 VVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTEE---- 122 (419)
T ss_dssp HSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred cchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhccC----
Confidence 3379999999999 9987 78888999999999999999876 34 588999999999999999 555433222
Q ss_pred CCCCCCCccchhhhhhccCCCCcchhhhhhhHHHHHHHHhhhchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 530 PHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYP--ALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSL 607 (841)
Q Consensus 530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~--~~~~~q~L~~~~~~iy~~l~~~~~~~l~~~L~~ 607 (841)
+ ++.+. . + +++ . +|| +..|+++|..++.+||++|+++++++|.|++++
T Consensus 123 ~--~~~~~-----------~-----------~-~~~-~----~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~l~p 172 (419)
T 2f6h_X 123 T--FKNGM-----------T-----------D-EEY-K----EYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKKAIN 172 (419)
T ss_dssp C------C-----------C-----------H-HHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--ccccc-----------c-----------h-hhH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 00000 1 0 121 1 222 567999999999999999999999999999999
Q ss_pred hhcCCCCCCCC--c-cC--CCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccC
Q 003183 608 CIQAPRTSKGS--V-LR--SGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRR 682 (841)
Q Consensus 608 ~i~~p~~~~~~--~-~~--~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r~ 682 (841)
||+.+....+. . .. .++.+. .++.++|++|+++|++++++|+.|+|||.+++|+|+|+|||||+++||+||+|+
T Consensus 173 aIl~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~Il~~L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~ 251 (419)
T 2f6h_X 173 AVVISESLPGFSAGETSGFLNKIFA-NTEEYTMDDILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKR 251 (419)
T ss_dssp HHTTSCSSTTTTC----------------CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhCccccccccccccccccccccc-CCCccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99776543210 0 00 012222 344679999999999999999999999999999999999999999999999999
Q ss_pred CcCCcchhhHHhhchHHHHHHHhhcccccccCcHHHhHHHHHHHHHHhccccccccHHHHHhccCCCCCHHHHHHHHhcC
Q 003183 683 ECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLY 762 (841)
Q Consensus 683 ~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y 762 (841)
+||||++|+||||||+.||+||+++|+ ++++++|+||+||++|||++||+..|+++|+ ++||+|||+||+|||++|
T Consensus 252 ~~cs~s~G~qIr~nls~Le~W~~~~~l---~~a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~-~~C~~Ln~~Ql~~il~~Y 327 (419)
T 2f6h_X 252 NFLSWKRGLQLNYNVTRLEEWCKTHGL---TDGTECLQHLIQTAKLLQVRKYTIEDIDILR-GICYSLTPAQLQKLISQY 327 (419)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHTTC---TTHHHHTHHHHHHHHHTTSCCSSHHHHHHHH-HHTTTSCHHHHHHHHHHC
T ss_pred cccchhhHHHHHhhHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHhhCCCchhhHHHHH-HHhhcCCHHHHHHHHHhC
Confidence 999999999999999999999999995 4688999999999999999988877787876 999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHhhhhcCCCCC----------C-CCcccc--cCCCcccccccccccccccccccCCC--cch
Q 003183 763 WDDNYNTRSVSPNVISSMRILMTEDSNDA----------T-SNSFLL--DDNSSIPFSVDDLSNSLQEKDFLDVK--AAE 827 (841)
Q Consensus 763 ~~d~~e~~~v~~~~i~~v~~~~~~~~~~~----------~-~~~ll~--D~~~~~Pf~~~~~~~~~~~~~~~~~~--~p~ 827 (841)
+||+|| ++||++||++|++++++++++. . +++|+| |.++.+||+.++. -.+.+|+ ||+
T Consensus 328 ~~d~~e-~~v~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~d~~~~~Pf~~p~~------~~~~~i~~~iP~ 400 (419)
T 2f6h_X 328 QVADYE-SPIPQEILRYVADIVKKEAALSSSGNDSKGHEHSSSIFITPETGPFTDPFSLIKT------RKFDQVEAYIPA 400 (419)
T ss_dssp CCCTTS-CCCCHHHHHHHHHHHHHHHHGGGCC----------CCSCCCCCCCCCCGGGGSCC------CCCCCCCCCCCT
T ss_pred CCccCC-CCCCHHHHHHHHHHHhcccccccccccccccccccccccccCCcccCCCcCCCCc------CcHHHHHhhCCC
Confidence 999997 5999999999999999876542 1 258999 5555599987764 2667777 999
Q ss_pred hhh
Q 003183 828 ELL 830 (841)
Q Consensus 828 ~l~ 830 (841)
.|+
T Consensus 401 ~l~ 403 (419)
T 2f6h_X 401 WLS 403 (419)
T ss_dssp TCC
T ss_pred ccc
Confidence 875
No 2
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-57 Score=488.88 Aligned_cols=287 Identities=18% Similarity=0.226 Sum_probs=225.5
Q ss_pred chHHHHHHHHhh-ccc-chhhhhhHHHHHHHHHHHHHhcc--CC-CcchhHHHhhHHHHHHHH--HHh-hhhcCCCCCCC
Q 003183 459 VAAFTIYKCLLH-WKS-FEAERTSVFDRLIQMIGSAIENE--DD-NDHMAYWLSNTSTLLFLL--QRS-LKAAGASGATP 530 (841)
Q Consensus 459 ~pA~il~~c~~~-~~~-~~~e~~~ll~~ii~~I~~~i~~~--~d-~~~l~fWLsN~~~Ll~~l--q~~-~~~~~~~~~~~ 530 (841)
.||||||+|+++ |+. ...+..+|+.+++++|+.++++. +| ++.++|||||+++|++|+ .++ +..++
T Consensus 53 ~PA~ii~~~~~~m~~~gl~~~s~~fl~~v~~~I~~~v~~~~~~d~i~~g~FWLsN~~~l~sFv~~~q~~~~~~~------ 126 (386)
T 3mmi_A 53 GPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLPKDETMLGGIFWLSNLSRLPAFAANQKTLYEANG------ 126 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTTHHHHHHHHHTTC----------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccccchHHHHhHHHHHHHHHHHHHHHHccC------
Confidence 499999999995 543 55667889999999999999873 44 799999999999999975 222 11100
Q ss_pred CCCCCCccchhhhhhccCCCCcchhhhhhhHHHHHHHHhhhchhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 003183 531 HKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAA----YVEKIYGIIRDNLKKELSSLLS 606 (841)
Q Consensus 531 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~q~L~~----~~~~iy~~l~~~~~~~l~~~L~ 606 (841)
+. + + ..++.. +++.|.. +.++||++|+++++++|+|++
T Consensus 127 -----------------~d------~----y-~~ll~e---------~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~il- 168 (386)
T 3mmi_A 127 -----------------GD------E----K-DKLTLI---------YLNDLENETLKVFDKIYSTWLVKFMKHASAHI- 168 (386)
T ss_dssp --------------------------------CHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -----------------hh------H----H-HHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-
Confidence 00 0 1 222211 3344444 455999999999999999977
Q ss_pred hhhcCCCCCCCCccCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCcCC
Q 003183 607 LCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCT 686 (841)
Q Consensus 607 ~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r~~~cs 686 (841)
|++...+.. +.+. +++.++|++|+++|+++|++|+.|+|||.+++|+|+|+||||||++||+||+|++|||
T Consensus 169 -----P~~~~~~~~---k~~~-~~~~~s~~~Il~~L~~~~~~L~~~~V~p~li~QlfsQLF~fIna~lFN~LLlRr~~cs 239 (386)
T 3mmi_A 169 -----EIFDMVLNE---KLFK-NSGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLITKCPALN 239 (386)
T ss_dssp -----THHHHHTCG---GGSS-SCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCBC
T ss_pred -----ccccccccc---cccC-CCCccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHccCcccC
Confidence 344322111 1112 4567899999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhhchHHHHHHHhhcccccccCcHHHhHHHHHHHHHHhccccccccHHHHHhccCCCCCHHHHHHHHhcCCCCC
Q 003183 687 FSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDN 766 (841)
Q Consensus 687 ~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y~~d~ 766 (841)
|++|+||||||+.||+||++ | .+.++++|+||+||++|||++|++..|++.|+ ++||+|||+||+|||++|+|++
T Consensus 240 ~s~G~qIr~NLs~LEeW~~~-~---l~~a~~~L~~L~QA~~LLQ~~K~t~~Di~~i~-~~C~~Lsp~QL~kIL~~Y~p~~ 314 (386)
T 3mmi_A 240 WKYGYEVDRNIERLVSWFEP-R---IEDVRPNLIQIIQAVKILQLKISNLNEFKLLF-DFWYALNPAQIQAILLKYKPAN 314 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-T---SSCCGGGGHHHHHHHHHHHCCCCCHHHHHHHH-TTCCSSCHHHHHHHHHTBCCC-
T ss_pred cchHHHHHhhHHHHHHHHHh-c---cHHHHHHHHHHHHHHHHHccCCCCHHHHHHHH-HhcccCCHHHHHHHHHhCcCCC
Confidence 99999999999999999999 6 46778999999999999999976665666665 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHhhhhcCCCC-CCCCcccccCCCc
Q 003183 767 YNTRSVSPNVISSMRILMTEDSND-ATSNSFLLDDNSS 803 (841)
Q Consensus 767 ~e~~~v~~~~i~~v~~~~~~~~~~-~~~~~ll~D~~~~ 803 (841)
|.++|||++|+++|+++++++++. +....+|+|+++.
T Consensus 315 ~~E~~V~~e~i~~v~~~lk~~~~~~~~~~~i~~~~~~~ 352 (386)
T 3mmi_A 315 KGEAGVPNEILNYLANVIKRENLSLPGKMEIMLSAQFD 352 (386)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHCSSCCCSSCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHhcccccCCcchhhhhcccch
Confidence 933699999999999999977643 2233577777664
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=1.5e-47 Score=472.88 Aligned_cols=265 Identities=32% Similarity=0.528 Sum_probs=205.3
Q ss_pred CccchHHHHHhhccccCC-----ChHHHHHHHHHHhCC--CCeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIVSS-----DEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVR 73 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~~-----d~~~~~~~iL~~~~~--~~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~~R 73 (841)
+|++|.||+.||++|++. |.+++|+.||..+++ +.|++|+||||||+|+++.||++|.++++.+|+.||++||
T Consensus 700 ~R~~~~eF~~RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~R~~~l~~aa~~IQa~~R 779 (1080)
T 2dfs_A 700 SRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIR 779 (1080)
T ss_dssp EEEEHHHHHHHHTTTSCGGGCCSSHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHCCccCCCCChHHHHHHHHHHhcCChhhheeccccchhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999942 889999999999855 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 003183 74 SYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELR 153 (841)
Q Consensus 74 ~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~~~~ 153 (841)
||++|++|.+++.+++.||++|||+++|+.+..+|+..||+.||++||||.+|+.|..++.+++.||++|||+++|+.+.
T Consensus 780 g~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 780 GWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 154 FRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQL 233 (841)
Q Consensus 154 ~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a~~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el~~~l~~ 233 (841)
..+...||+.||++||||.+|+.|++.+++++.||++||++++|++++.++.++++++++++.+.+||+++.+|++++++
T Consensus 860 ~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 860 MMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE 939 (1080)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 234 EKRMRVDMEEAKTQENAKLQSALQEMQLQFKE 265 (841)
Q Consensus 234 e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~ 265 (841)
+++.+.++.+......++++.++.+|+.++++
T Consensus 940 ~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~ 971 (1080)
T 2dfs_A 940 QNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971 (1080)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 76665555444333333444444444444433
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.91 E-value=1.6e-22 Score=250.23 Aligned_cols=143 Identities=29% Similarity=0.325 Sum_probs=122.3
Q ss_pred EEEcccccHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHH
Q 003183 42 KVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIML--RRSAIHIQAACRGQLARTVYESMRREASCLRIQRD 119 (841)
Q Consensus 42 KvF~rag~~a~Le~~R~~~l~~aa~~IQ~~~R~~~~Rk~~~~~--r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~ 119 (841)
-+.+++...+++.+.+..+++.+++.||++||||++|++|..+ ..||+.||++||||++|+.|..+| .|++.||+.
T Consensus 771 a~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr--~aai~IQs~ 848 (1080)
T 2dfs_A 771 CIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMR--DATIALQAL 848 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHH
Confidence 3556677778999999999999999999999999999998765 479999999999999999999988 799999999
Q ss_pred HHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 120 LRMYLAKKAYKDMC--FSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQ 188 (841)
Q Consensus 120 ~R~~~~r~~~~~~r--~aai~iQs~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a~~~iQ 188 (841)
|||+.+|+.|..++ .+++.||+.|||+++|+.+.. ..+|++.||+.||++.+|+.|++++.++..++
T Consensus 849 ~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~--~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~ 917 (1080)
T 2dfs_A 849 LRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHR--TLKAIVYLQCCYRRMMAKRELKKLKIEARSVE 917 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTT--THHHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999876 479999999999999998864 45799999999999999999999987665443
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.90 E-value=1.9e-23 Score=263.98 Aligned_cols=105 Identities=26% Similarity=0.429 Sum_probs=93.8
Q ss_pred CccchHHHHHhhccccC-------CChHHHHHHHHHHhCC--CCeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIVS-------SDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRK 71 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-------~d~~~~~~~iL~~~~~--~~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~ 71 (841)
+|++|.+|+.||++|++ .|.+.+|+.||..+++ +.|++|+||||||+|+++.||..|.+++..+++.||++
T Consensus 722 ~R~~~~~F~~ry~~L~~~~~~~~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~r~~~l~~~~~~iQ~~ 801 (1184)
T 1i84_S 722 NRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQ 801 (1184)
T ss_dssp EEEEHHHHHHHTTTTCTTTSCSSCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhccccCCcCCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999983 2789999999999876 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh---hhHHHHHHHHHhhhhhhhhh
Q 003183 72 VRSYLSRKNYIMLR---RSAIHIQAACRGQLARTVYE 105 (841)
Q Consensus 72 ~R~~~~Rk~~~~~r---~aai~IQ~~~Rg~laR~~~~ 105 (841)
||||++|++|.+++ .|++.||+.||||++|+.+.
T Consensus 802 ~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 802 CRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999998874 67788888888888776544
No 6
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.75 E-value=1.5e-18 Score=208.25 Aligned_cols=107 Identities=30% Similarity=0.483 Sum_probs=94.2
Q ss_pred CccchHHHHHhhccccC-------CChHHHHHHHHHHhCCC--CeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIVS-------SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRK 71 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-------~d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~ 71 (841)
+|++|+||+.||++|++ .|.+++|+.||..++++ .|++|+||||||+|+++.||++|.+++..+++.||++
T Consensus 709 ~R~~f~eF~~RY~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQa~ 788 (837)
T 1kk8_A 709 SRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAH 788 (837)
T ss_dssp EEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 48999999999999982 38899999999999775 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---hhhHHHHHHHHHhhhhhhhhhhh
Q 003183 72 VRSYLSRKNYIML---RRSAIHIQAACRGQLARTVYESM 107 (841)
Q Consensus 72 ~R~~~~Rk~~~~~---r~aai~IQ~~~Rg~laR~~~~~~ 107 (841)
||||++|++|.++ +.|++.||+.||||++|+.+..+
T Consensus 789 ~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~ 827 (837)
T 1kk8_A 789 IRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWW 827 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH
Confidence 9999999999887 56777777777777777655543
No 7
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.61 E-value=5.1e-16 Score=189.75 Aligned_cols=102 Identities=22% Similarity=0.350 Sum_probs=93.7
Q ss_pred CccchHHHHHhhccccC-----CChHHHHHHHHHHhCCC--CeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIVS-----SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVR 73 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-----~d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~~R 73 (841)
+|++|+||++||++|++ .|++++|+.||+.++++ .||+|+||||||+|+++.||++|..++..++++||+ +|
T Consensus 707 ~R~~f~eF~~RY~~L~~~~~~~~d~k~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~~~~iq~-~r 785 (1052)
T 4anj_A 707 SRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKR-VN 785 (1052)
T ss_dssp EEEEHHHHHHHHHTTSCSSGGGSCHHHHHHHHHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHH-HH
T ss_pred CcCcHHHHHHHHHHhCcccccCCCHHHHHHHHHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 48999999999999993 58899999999999775 899999999999999999999999999999988885 79
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhhh
Q 003183 74 SYLSRKNYIMLRRSAIHIQAACRGQLARTV 103 (841)
Q Consensus 74 ~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~ 103 (841)
||++|++|.+++.+++.||..+|++..|+.
T Consensus 786 ~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 786 HWLICSRWKKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876543
No 8
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.58 E-value=1.8e-15 Score=180.83 Aligned_cols=88 Identities=39% Similarity=0.681 Sum_probs=81.2
Q ss_pred CccchHHHHHhhccccC-----CChHHHHHHHHHHhCC--CCeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIVS-----SDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVR 73 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-----~d~~~~~~~iL~~~~~--~~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~~R 73 (841)
+|++|+||+.||++|++ .|.+++|+.||..+++ +.||+|+||||||+|+++.||++|.+++..+++.||++||
T Consensus 700 ~R~~f~eF~~RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~R 779 (795)
T 1w7j_A 700 SRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIR 779 (795)
T ss_dssp EEEEHHHHHHHHGGGSCGGGCCSCHHHHHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHhCCCccceEEcCceEEEchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999994 2889999999999865 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhH
Q 003183 74 SYLSRKNYIMLRRSA 88 (841)
Q Consensus 74 ~~~~Rk~~~~~r~aa 88 (841)
||++|++|.++|.|+
T Consensus 780 g~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 780 GWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998765
No 9
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.40 E-value=2.4e-12 Score=158.16 Aligned_cols=107 Identities=21% Similarity=0.321 Sum_probs=81.7
Q ss_pred CccchHHHHHhhccccC------CChHHHHHHHHHHhCCC--CeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIVS------SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKV 72 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~------~d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~~ 72 (841)
+|++|+||+.||++|++ .|.+++|+.||..++++ .|++|+||||||+|+++.||++|.+++..+++.||-..
T Consensus 694 ~r~~~~~F~~RY~~L~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY~~ 773 (1010)
T 1g8x_A 694 NRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLK 773 (1010)
T ss_dssp EEEEHHHHHHHHGGGSTTCCTTCSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhCCCCCcCCCCHHHHHHHHHHHcCCCccceeehhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999983 48899999999999775 89999999999999999999999999999999988544
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 003183 73 RSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMY 123 (841)
Q Consensus 73 R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~ 123 (841)
++. .++.++|+..++...+.. ..+...||+.++.+
T Consensus 774 ~a~--------------~L~~WIr~kqa~l~~r~~--~~sl~~IQ~ll~~f 808 (1010)
T 1g8x_A 774 RAN--------------ELVQWINDKQASLESRDF--GDSIESVQSFMNAH 808 (1010)
T ss_dssp HHH--------------HHHHHHHHHHHHHHCCCC--CSSHHHHHHHHHHH
T ss_pred HHH--------------HHHHHHHHHHHHHHhhhc--cccHHHHHHHHHHH
Confidence 332 234455555543222221 24555666666654
No 10
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.39 E-value=1.6e-14 Score=177.64 Aligned_cols=64 Identities=30% Similarity=0.603 Sum_probs=58.1
Q ss_pred CccchHHHHHhhccccC-------CChHHHHHHHHHHhCC--CCeeeeeeEEEcccccHHHHHHHHHHHHhhh
Q 003183 1 MFFLLNNFLTVYGIIVS-------SDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLGRS 64 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-------~d~~~~~~~iL~~~~~--~~yq~G~TKvF~rag~~a~Le~~R~~~l~~a 64 (841)
+|++|.||+.||++|++ .|.+++|+.||..+++ +.|++|+||||||+|+++.||++|.+++..+
T Consensus 689 ~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~~~l~~~ 761 (995)
T 2ycu_A 689 NRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERASEQTKS 761 (995)
T ss_dssp EEEEHHHHHHHHGGGSTTTSCSCCCCSCCSCCCSCCCSSEEESSEEEESSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCChhheeecceEEEEecchhhhHHHHHHHHhhhh
Confidence 48999999999999983 3789999999999876 5899999999999999999999999998875
No 11
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.22 E-value=1.4e-11 Score=98.45 Aligned_cols=56 Identities=32% Similarity=0.497 Sum_probs=53.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHH
Q 003183 59 EVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCL 114 (841)
Q Consensus 59 ~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~ 114 (841)
++++.+|+.||++||||++|++|..++.+++.||++|||+++|+.+..++++.||+
T Consensus 2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA~ 57 (58)
T 2ix7_C 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAAT 57 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 46789999999999999999999999999999999999999999999999988876
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.16 E-value=1.6e-10 Score=146.20 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHHHHH
Q 003183 76 LSRKNYIMLRRSAIHIQAACRGQLARTVYESMRR-EASCLRIQRDLRMYLAKKAYK 130 (841)
Q Consensus 76 ~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~-~~Aa~~IQ~~~R~~~~r~~~~ 130 (841)
+...+-..+...++.||++||||++|+.|.+++. ..|+++||++||+|+.++.|.
T Consensus 783 LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 783 LEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344444555667777777777777777776653 356667777777777766543
No 13
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.00 E-value=7.4e-10 Score=88.37 Aligned_cols=53 Identities=38% Similarity=0.586 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 110 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASI 162 (841)
Q Consensus 110 ~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~~~~~~~~~~aA~ 162 (841)
..||+.||++||||++|+.|..++.+++.||++|||+++|+.+..++.++||+
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA~ 57 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 47899999999999999999999999999999999999999998888887774
No 14
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=98.96 E-value=3e-10 Score=135.92 Aligned_cols=75 Identities=27% Similarity=0.470 Sum_probs=63.5
Q ss_pred CccchHHHHHhhccccC-----CChHHHHHHHHHHhCCC--CeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIVS-----SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVR 73 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-----~d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~~~R 73 (841)
+|++|+||++||++|++ .|.+.+|+.||..++++ .||+|+||||||+|+++.||+++.......+. |++.+|
T Consensus 703 ~R~~f~eF~~RY~~L~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~~~-ii~~v~ 781 (784)
T 2v26_A 703 SRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAE-LVKRVN 781 (784)
T ss_dssp EEEEHHHHHHHHGGGCCHHHHTSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHH-HHHHHH
T ss_pred ccccHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHHHH-HHHHHH
Confidence 48999999999999994 68999999999999774 89999999999999999999987554444443 557888
Q ss_pred HHH
Q 003183 74 SYL 76 (841)
Q Consensus 74 ~~~ 76 (841)
+|+
T Consensus 782 ~wl 784 (784)
T 2v26_A 782 HWL 784 (784)
T ss_dssp HHC
T ss_pred hhC
Confidence 884
No 15
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1e-09 Score=83.95 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=36.3
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003183 84 LRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAY 129 (841)
Q Consensus 84 ~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~ 129 (841)
++.+++.||++|||+++|+.+..++++.||+.||+.||||.+|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 3567778888888888888887777777888888888888888766
No 16
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.80 E-value=8.5e-09 Score=78.78 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=34.3
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 132 MCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHY 177 (841)
Q Consensus 132 ~r~aai~iQs~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~ 177 (841)
++.+++.||+.+||+++|+.+...+...||+.||++||||.+|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 3456677777777777777777667777888888888888887765
No 17
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=98.71 E-value=1.6e-09 Score=129.15 Aligned_cols=62 Identities=31% Similarity=0.529 Sum_probs=36.8
Q ss_pred CccchHHHHHhhccccC--------CChHHHHHHHHHHhCCC--CeeeeeeEEEcccccHHHHHHHHHHHHh
Q 003183 1 MFFLLNNFLTVYGIIVS--------SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLG 62 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~--------~d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag~~a~Le~~R~~~l~ 62 (841)
+|++|.||++||++|++ .|.+++|+.||..++++ .||+|+||||||+|+++.||++|++++.
T Consensus 711 ~R~~f~eF~~RY~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~~l~ 782 (783)
T 4db1_A 711 NRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLS 782 (783)
T ss_dssp EEEEC--------------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC-----
T ss_pred ccCcHHHHHHHHHHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHHHhc
Confidence 48999999999999993 37899999999999775 7999999999999999999999998774
No 18
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=98.68 E-value=1.3e-09 Score=129.55 Aligned_cols=66 Identities=24% Similarity=0.445 Sum_probs=24.1
Q ss_pred CccchHHHHHhhccccC------CChHHHHHHHHHHhCC--CCeeeeeeEEEcccccHHHHHHHHHHHHhhhHH
Q 003183 1 MFFLLNNFLTVYGIIVS------SDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLGRSAS 66 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~------~d~~~~~~~iL~~~~~--~~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~ 66 (841)
+|++|.||+.||++|++ .|.+++|+.||..+++ +.||+|+||||||+|+++.||++|.+++..+++
T Consensus 694 ~R~~f~eF~~RY~~L~~~~~~~~~d~k~~~~~lL~~~~~~~~~~~~G~TKVF~r~~~l~~LE~~R~~~l~~~~~ 767 (770)
T 1w9i_A 694 NRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARELRGDYKDD 767 (770)
T ss_dssp EEEESCC-----------------------------------CCCCCSSEEEECTTTTTC--------------
T ss_pred ccccHHHHHHHHHHhccccccCCCCHHHHHHHHHHhcCCCcccEEeCCeeEEecccHHHHHHHHHHHHHHHHhc
Confidence 48999999999999973 3789999999999876 489999999999999999999999999988764
No 19
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=98.65 E-value=5.6e-09 Score=123.34 Aligned_cols=61 Identities=20% Similarity=0.358 Sum_probs=50.2
Q ss_pred CccchHHHHHhhccccC-------CChHHHHHHHHHHhCCC--CeeeeeeEEEcccc-cHHHHHHHHHHHH
Q 003183 1 MFFLLNNFLTVYGIIVS-------SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAG-QMADLDARRTEVL 61 (841)
Q Consensus 1 ~R~~f~eF~~RY~~L~~-------~d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag-~~a~Le~~R~~~l 61 (841)
+|++|+||+.||++|++ .|.+++|+.||..++++ .||+|+||||||+| .++.||+.|++++
T Consensus 626 ~R~~~~eF~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 626 GRIEYTRFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp BCCBSHHHHTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC----
T ss_pred ccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 59999999999999994 47899999999999775 99999999999997 6799999998875
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.97 E-value=7.9e-06 Score=66.22 Aligned_cols=47 Identities=36% Similarity=0.399 Sum_probs=29.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhhhhhhh
Q 003183 57 RTEVLGRSASIIQRKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTV 103 (841)
Q Consensus 57 R~~~l~~aa~~IQ~~~R~~~~Rk~~~~~---r~aai~IQ~~~Rg~laR~~ 103 (841)
|++++..+++.||+.+|||++|+.|.++ +.|+..||+.+|+|++++.
T Consensus 1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456667777777777777777776665 4555566666666555543
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.76 E-value=2.9e-05 Score=62.64 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=19.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhhhhh
Q 003183 61 LGRSASIIQRKVRSYLSRKNYIML---RRSAIHIQAACRGQLAR 101 (841)
Q Consensus 61 l~~aa~~IQ~~~R~~~~Rk~~~~~---r~aai~IQ~~~Rg~laR 101 (841)
+..+++.||+.+|||++|+.|.++ +.|+..||+.+|+|+++
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l 46 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEF 46 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555444 34444444444444443
No 22
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.69 E-value=4.9e-05 Score=61.49 Aligned_cols=46 Identities=28% Similarity=0.463 Sum_probs=37.6
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhhhh-hHHHHHHHHHHHHHHHHHH
Q 003183 84 LRRSAIHIQAACRGQLARTVYESMRRE-ASCLRIQRDLRMYLAKKAY 129 (841)
Q Consensus 84 ~r~aai~IQ~~~Rg~laR~~~~~~r~~-~Aa~~IQ~~~R~~~~r~~~ 129 (841)
+...++.+|+.+||+++|+.+.++... .|+.+||+++|+|..++.+
T Consensus 5 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 5 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 446788999999999999999888654 4666899999999888754
No 23
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.66 E-value=4e-05 Score=61.78 Aligned_cols=46 Identities=30% Similarity=0.444 Sum_probs=37.7
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhhhh-hHHHHHHHHHHHHHHHHHH
Q 003183 84 LRRSAIHIQAACRGQLARTVYESMRRE-ASCLRIQRDLRMYLAKKAY 129 (841)
Q Consensus 84 ~r~aai~IQ~~~Rg~laR~~~~~~r~~-~Aa~~IQ~~~R~~~~r~~~ 129 (841)
+...++.+|+.+||+++|+.+.++... .|+.+||+++|+|..++.+
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 346688999999999999999988654 5666999999999888754
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.46 E-value=0.014 Score=56.86 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK 346 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~ 346 (841)
+..|+.+...|......+...+.+++....+++........-+.+.+.+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~k 138 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQR 138 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHH
Confidence 4445555555555555555555555555555544444443334443333
No 25
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.23 E-value=0.0003 Score=84.78 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=25.9
Q ss_pred HHHhhhHHHHHHHHHhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHHHH
Q 003183 82 IMLRRSAIHIQAACRGQLARTVYESMRR-EASCLRIQRDLRMYLAKKAY 129 (841)
Q Consensus 82 ~~~r~aai~IQ~~~Rg~laR~~~~~~r~-~~Aa~~IQ~~~R~~~~r~~~ 129 (841)
..+...++.||++||||++|+++.+++. ..|+++||++||+|++|+.|
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 3444555566666666666666555542 24555555555555555543
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.60 E-value=0.44 Score=49.27 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQAL 341 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~ 341 (841)
.+..|..+...++.....+++.+.++..++++++.....+...+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555444444444333333
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.53 E-value=0.52 Score=64.41 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 343 AESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 343 ~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
++.=+..|..|..+-.+.+..++.+...+
T Consensus 2075 A~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2075 SIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 33344556666677777777777666654
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.27 E-value=0.12 Score=49.20 Aligned_cols=13 Identities=46% Similarity=0.463 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 003183 220 LEKQVEELTWRLQ 232 (841)
Q Consensus 220 le~kv~el~~~l~ 232 (841)
|++++.++...+.
T Consensus 11 LekQL~E~n~kLk 23 (168)
T 3o0z_A 11 LQKQLEEANDLLR 23 (168)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 29
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.90 E-value=0.09 Score=48.97 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 118 RDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKA 183 (841)
Q Consensus 118 ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a 183 (841)
+.+..|+.+.+|.+...++..+=..-.-. ..+..+++.||+.+|||++|+.|+.....
T Consensus 13 ~kV~~WLi~sRWrK~q~~~lsvIKLknKI--------~yR~~~~i~iQktvR~~L~rkkhkPRi~g 70 (148)
T 3gn4_A 13 KRVNHWLICSRWKKVQWCSLSVIKLKNKI--------KYRAEACIKMQKTIRMWLCKRRHKPRIDG 70 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 45677888888877666554332211111 23446778888888888888888766544
No 30
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.41 E-value=0.35 Score=44.47 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 357 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~L 357 (841)
.+..|......|+..+.++...+++.+....++...+ ..++..+.+|+..++++
T Consensus 70 ~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~k-------kkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 70 RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKK-------RKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554444444443333 33344444444444444
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.32 E-value=0.14 Score=59.79 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+.++..+++++.+.+..+....++...+.++..+.+.++..+.+..++..++.+.++++++..+..++..+.+
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333333333333333333333333344444444444444555555555555555444
No 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.14 E-value=5.4 Score=54.78 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
++++++.+....++++.+.++++.+++.++++++...++...+...++.+++..+..+++.+.-+..|..|..
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4444455555555555555555555555555555544444444444444444444444444444444444444
No 33
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=94.71 E-value=0.16 Score=47.29 Aligned_cols=54 Identities=19% Similarity=0.409 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003183 70 RKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKD 131 (841)
Q Consensus 70 ~~~R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~ 131 (841)
+.+..|+.|.+|.+...++..+=..-....-| ..|++.||+.+|||++|++|.-
T Consensus 13 ~kV~~WLi~sRWrK~q~~~lsvIKLknKI~yR--------~~~~i~iQktvR~~L~rkkhkP 66 (148)
T 3gn4_A 13 KRVNHWLICSRWKKVQWCSLSVIKLKNKIKYR--------AEACIKMQKTIRMWLCKRRHKP 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhh
Confidence 56788999999988876655443322222222 2677888888888888886654
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.65 E-value=0.79 Score=53.35 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
..+....+.++.++...++++++..+..++++++..++++++.+.++++.++++++..++.++.+++++...
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444455555555555555555555555566666666666666667777777777777777777766553
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.65 E-value=2.6 Score=38.58 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E 367 (841)
|......++.+++.|+..
T Consensus 102 L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 102 LTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 36
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.45 E-value=5.2 Score=41.14 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 340 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l 340 (841)
.++.+..+...++.++.++...+++.+..+.+++.....+...+
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555554444444443
No 37
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.23 E-value=2.3 Score=39.88 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=15.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 321 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 358 (841)
Q Consensus 321 e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le 358 (841)
+.......++.....+..++.+.+..+..++.++..|+
T Consensus 105 ~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 105 DARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444333
No 38
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=94.03 E-value=0.027 Score=36.68 Aligned_cols=20 Identities=45% Similarity=0.642 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 003183 108 RREASCLRIQRDLRMYLAKK 127 (841)
Q Consensus 108 r~~~Aa~~IQ~~~R~~~~r~ 127 (841)
+++.||++||+.||+|+.++
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888764
No 39
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=93.90 E-value=0.042 Score=36.88 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 003183 108 RREASCLRIQRDLRMYLAKKA 128 (841)
Q Consensus 108 r~~~Aa~~IQ~~~R~~~~r~~ 128 (841)
+++.||++||+.||+|+.++.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456889999999999988764
No 40
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.78 E-value=5.3 Score=38.81 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=1.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~~ 370 (841)
.++.+|++++..|+.|+..
T Consensus 161 ~~~QRLkdE~rDLk~El~v 179 (189)
T 2v71_A 161 VSVQRLKDEARDLRQELAV 179 (189)
T ss_dssp CCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.51 E-value=0.76 Score=42.64 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 303 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 303 ~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
.+.-+++.+.+.++..+++.++++..++.+...+..++..++.++.++++++..|+.++.+|+.++..
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555544444455555666666777777777777777766654
No 42
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.60 E-value=5.2 Score=35.36 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 362 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~ 362 (841)
....|+.+...|....+.+...+.++|...++++........-+.+.+.+....-+...=|+.++.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777777766666555566666655554444444444443
No 43
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=92.48 E-value=0.086 Score=34.29 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 156 RQTRASILIQSHCRKYLARL 175 (841)
Q Consensus 156 ~~~~aA~~IQ~~~R~~~~r~ 175 (841)
+++.||++||+.||+|+.++
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678888898888888754
No 44
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.36 E-value=1.6 Score=36.91 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++..+..++.++..+++.++..+++.+.++++-...+..++.++..+...++++.-...+|+.++..|++|+.-+++
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355667777888888888888888888887777766666666666666666666666667788888888888877653
No 45
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=92.32 E-value=0.14 Score=34.44 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 156 RQTRASILIQSHCRKYLARLH 176 (841)
Q Consensus 156 ~~~~aA~~IQ~~~R~~~~r~~ 176 (841)
+++.+|++||+.||+|+.++.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356788888988888887754
No 46
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.75 E-value=3.1 Score=37.51 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+..+..++.++..+++.++..+++.+.+.++....+..++.++..+...+++..-...+|+.+++.|++|+.-+
T Consensus 29 id~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 29 VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555554444333444444443333333333333333444444444444444
No 47
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=91.17 E-value=3.8 Score=34.87 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~ 368 (841)
.+.+..+..+..+++..+........+++.....+...+..+..++.++++.+..|.....+|+.++..++..+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666666667766666666666666677777777777777777777777776553
No 48
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=90.95 E-value=2.6 Score=44.96 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=81.7
Q ss_pred CCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhcc-CCcCCcchhhHHhhchHHHHHHHhh-
Q 003183 629 DSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLR-RECCTFSNGEYVKAGLAELELWCCQ- 706 (841)
Q Consensus 629 ~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~- 706 (841)
+.++..+.+++.+|.+++.. .-++|+.+..-++...|.+|+..+.+-|+.. -+..+-.--.++...|..+|..+.+
T Consensus 215 ~~ps~yi~dli~fL~~~f~s--l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~ 292 (325)
T 2a2f_X 215 GIASAFITDMISYLKSTFDS--FAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASE 292 (325)
T ss_dssp CSCCHHHHHHHHHHHHHHHT--TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhC
Confidence 44677899999999999994 6799999999999999999999999977653 2556767778899999999999987
Q ss_pred --cccccccCcHHHhHHHHHHHHHHhcc
Q 003183 707 --AKEEYAGSSWDELKHIRQAVGFLVIH 732 (841)
Q Consensus 707 --~~~~~~~~~~~~L~~l~Qa~~lLq~~ 732 (841)
.|+ ..+.-...|..|+|.++||+..
T Consensus 293 ~v~~l-~~~~L~~~F~eLrQli~Ll~~~ 319 (325)
T 2a2f_X 293 PVPGL-KEGELSKYFLRNRQLLDLLILE 319 (325)
T ss_dssp SSSSC-CSSTTGGGGHHHHHHHHHHHCC
T ss_pred CCCCc-ccchHHHHHHHHHHHHHHHHhh
Confidence 332 2345678999999999999864
No 49
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.77 E-value=11 Score=35.44 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 303 SENEKLKTLVSSLEKKID 320 (841)
Q Consensus 303 ~e~~~L~~~l~~l~~~~~ 320 (841)
....+|+..++.++..+.
T Consensus 98 Rsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444443333333
No 50
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=90.25 E-value=0.37 Score=59.44 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 003183 110 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNE 151 (841)
Q Consensus 110 ~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~~aR~~ 151 (841)
..+|+.||+ +|+|++|++|++++.+++.||..+|+...|+.
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777775 79999999999999999999998888776654
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.79 E-value=4.9 Score=45.31 Aligned_cols=10 Identities=50% Similarity=0.654 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 003183 304 ENEKLKTLVS 313 (841)
Q Consensus 304 e~~~L~~~l~ 313 (841)
++++++.+++
T Consensus 450 ~~~~~~~~~~ 459 (487)
T 3oja_A 450 ENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHH
T ss_pred Hhhhhhhhhh
Confidence 3333333333
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.63 E-value=4 Score=37.92 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 337 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 337 ~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
.+.+....+.+..|+-++..+++++.+++.||..|-
T Consensus 95 ~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 95 NKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567778888888999999999999998763
No 53
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.05 E-value=0.45 Score=55.12 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=11.7
Q ss_pred CChHHHHHHHHHHhCC
Q 003183 18 SDEVTACKRLLEKVGL 33 (841)
Q Consensus 18 ~d~~~~~~~iL~~~~~ 33 (841)
...++.|..|...+|+
T Consensus 24 tt~~ell~~V~~~LgL 39 (575)
T 2i1j_A 24 TTGKQLFDQVVKTIGL 39 (575)
T ss_dssp CBHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHcCC
Confidence 3467778888888776
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.70 E-value=9.4 Score=42.93 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003183 308 LKTLVSSLEKKIDETEKKFEETSKISEER 336 (841)
Q Consensus 308 L~~~l~~l~~~~~e~e~~~~e~~~~~~~~ 336 (841)
.+.+.+...++++.++++.+.+++..+++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 33333333333333333333333333333
No 55
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=87.94 E-value=11 Score=33.40 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 302 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 302 ~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
...+++-+.++..|...+...|..+.++.+...... ......+..|...-++...++.+|+.||+.|.
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q---~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAK---RDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 333444444444444444444444444443332222 22344556667777777778888888888765
No 56
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.64 E-value=4.4 Score=37.46 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEE 359 (841)
Q Consensus 346 ~~~~L~~e~~~Le~ 359 (841)
++..|+.++..|+.
T Consensus 118 ~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 118 EINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 57
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.12 E-value=12 Score=31.06 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
+..+..++..++.+++..++.+......
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333
No 58
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.99 E-value=19 Score=32.28 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 003183 349 QLKTAMHRLEEKV 361 (841)
Q Consensus 349 ~L~~e~~~Le~~l 361 (841)
+|+.+++.|.+++
T Consensus 87 dLE~~iesL~eEl 99 (119)
T 3ol1_A 87 DLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 59
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.48 E-value=14 Score=30.60 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKV 361 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l 361 (841)
++..|+++.....+.+
T Consensus 56 en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 56 ENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444433333333
No 60
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.39 E-value=6.2 Score=32.03 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE 342 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~ 342 (841)
.++.|-.||.+|....+.+.--..++-.+.+++-.+.+.+..++..
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s 55 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEA 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4556666666666666666555555555555555444444433333
No 61
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=85.06 E-value=6.6 Score=32.30 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=24.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 325 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 325 ~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le 365 (841)
++..++..+....+++++++.++.+|..+++.+++++..|+
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556667777777777777666666666544
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.94 E-value=12 Score=41.62 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 349 QLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 349 ~L~~e~~~Le~~l~~le~E~~ 369 (841)
.|+..++++..+|++||.++.
T Consensus 135 vLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 135 LLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 63
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.86 E-value=8.4 Score=35.17 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 221 EKQVEELTWRLQLEKR 236 (841)
Q Consensus 221 e~kv~el~~~l~~e~~ 236 (841)
+.++..|...+..++.
T Consensus 45 ~~e~~~L~~~l~eE~~ 60 (135)
T 2e7s_A 45 DDEVKRLREDIAKENE 60 (135)
T ss_dssp HHHHHTHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 64
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.77 E-value=26 Score=32.80 Aligned_cols=12 Identities=25% Similarity=0.255 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 003183 224 VEELTWRLQLEK 235 (841)
Q Consensus 224 v~el~~~l~~e~ 235 (841)
+..|...+..|+
T Consensus 60 ~~~L~~~l~~E~ 71 (154)
T 2ocy_A 60 VKRLREDIAKEN 71 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333343333
No 65
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.25 E-value=21 Score=31.36 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+++++.+|..|..++.+..+++++|..+++.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 34444455555555555555555555555544
No 66
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=83.55 E-value=14 Score=29.93 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEET 329 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~ 329 (841)
..++++++.+|..|+..+..++..+++-..+.+.+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777666555444433
No 67
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=82.68 E-value=3.6 Score=29.24 Aligned_cols=33 Identities=36% Similarity=0.591 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++|.+..+|+....+|++.++-|+.||..|+|
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345666777778888888888999999988876
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=82.60 E-value=25 Score=30.99 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003183 308 LKTLVSSLEKKIDETEKKFEETSKISEERL 337 (841)
Q Consensus 308 L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~ 337 (841)
|+.++..++.....+...+.+++..++++.
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 333333333333333333333333333333
No 69
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.49 E-value=19 Score=29.90 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
+..+..|+..+..+++.+.+.+..
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 70
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=80.99 E-value=16 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 330 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~ 330 (841)
..+++.++.+|..|+..+..++..+++-..+.+.++
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~ 47 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERAR 47 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777776665554444433
No 71
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.77 E-value=26 Score=30.01 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER 336 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~ 336 (841)
.++.++...+.++..|...+.+......+++..+..+
T Consensus 16 ~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~i 52 (97)
T 2eqb_B 16 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL 52 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444443333333333333333
No 72
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.63 E-value=3.8 Score=37.41 Aligned_cols=12 Identities=42% Similarity=0.540 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 003183 304 ENEKLKTLVSSL 315 (841)
Q Consensus 304 e~~~L~~~l~~l 315 (841)
++.+++.++++|
T Consensus 68 ~~~~ie~ElE~L 79 (135)
T 2e7s_A 68 EADKLNKEVEDL 79 (135)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 73
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.82 E-value=27 Score=31.69 Aligned_cols=72 Identities=15% Similarity=0.303 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.+.++......|+.++++++.....++..+.+++..... ++.+.+..+..|..++..++.++...-.|.+.|
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555543322 234445556666666666666665555555544
No 74
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=78.80 E-value=34 Score=30.16 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 220 LEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESK 267 (841)
Q Consensus 220 le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~ 267 (841)
|...+.+++..|..+...+.+++.......++-..++..|..++...+
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE 58 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASE 58 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433333444444444444444443
No 75
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=78.72 E-value=12 Score=34.90 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH 355 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~ 355 (841)
.+++..|+.+....+....+...++.+...++.-++........++..++.++..|..++.
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444444444444444444443333333333333333433333333
No 76
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=78.57 E-value=22 Score=41.63 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=79.9
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCcCCcchhhHHhhchHHHHHHHhhcccc
Q 003183 631 ASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEE 710 (841)
Q Consensus 631 ~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~ 710 (841)
+++.....+..|...+..|...-+++.+...++.++..=|+..+|+.++++ +-.|-.-|.|+.+=+..|- .--+ .
T Consensus 561 pSaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~-nkFS~~Ga~Qf~~D~~~L~---~v~~-l 635 (706)
T 3fhn_A 561 PSAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILKL-NKFNQNGLNQFLHDFKSLS---SILS-L 635 (706)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTTT-SCBCHHHHHHHHHHHHHHH---TTSC-C
T ss_pred CCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CccCHHHHHHHHHHHHHHH---HHhc-C
Confidence 355678999999999999999999999999999999999999999999994 5567777888888777653 2223 2
Q ss_pred cccCcHHHhHHHHHHHHHHhccc
Q 003183 711 YAGSSWDELKHIRQAVGFLVIHQ 733 (841)
Q Consensus 711 ~~~~~~~~L~~l~Qa~~lLq~~k 733 (841)
+.+.+...|..|.+++.||-++.
T Consensus 636 p~~~~~~~~~~L~E~l~LL~L~~ 658 (706)
T 3fhn_A 636 PSHATNYKCMSLHELVKILKLKY 658 (706)
T ss_dssp CTTCCCHHHHHHHHHHHHHGGGG
T ss_pred CCcchhhHHHHHHHHHHHcCCCC
Confidence 34444468999999999999985
No 77
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=78.00 E-value=27 Score=28.65 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=21.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 321 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 321 e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
++.-+.++++.++..-+.+++...+.+..|+..++.=+.++..|+.+
T Consensus 30 ~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 30 HLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333444444443334444444444555554444444444444443
No 78
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.78 E-value=4.9 Score=46.43 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 250 AKLQSALQEMQLQFKESKEKLM 271 (841)
Q Consensus 250 ~~L~~~l~~l~~~l~~~~~~l~ 271 (841)
.+|+.++..++.+...++..+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~ 359 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLL 359 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444433
No 79
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=77.71 E-value=25 Score=30.34 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 358 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le 358 (841)
..|-.++..+-=+++-|+..+++.+....++.++..+..+++......+..|+.++..++
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666666666555544443333333333333444443333
No 80
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.08 E-value=7 Score=33.80 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFE 327 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~ 327 (841)
+.+..+..+.+.|+.+-+.|++.++.+|.+++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555443
No 81
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=77.08 E-value=21 Score=29.96 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 362 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~ 362 (841)
.+..+...++..++.++.++++.-..+..++.....+.+.+.++--...+|+.+++.|.++|.
T Consensus 18 ~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 18 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666655555555555555555544444444344455555555555554
No 82
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=76.57 E-value=35 Score=29.09 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+++..|+.+|..|+.++..+..+-. ..+ ...-...+.++...+..+..+...++-++..+..+...++.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~------~~~---~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGK------SRL---GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC------CCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777788877777766654311 111 11122334555556666666666666667667666666554
No 83
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=76.47 E-value=28 Score=28.24 Aligned_cols=17 Identities=24% Similarity=0.087 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 302 TSENEKLKTLVSSLEKK 318 (841)
Q Consensus 302 ~~e~~~L~~~l~~l~~~ 318 (841)
.++.+.|-.+..+|...
T Consensus 8 gkevEnLi~EN~eLl~T 24 (77)
T 2w83_C 8 GREVENLILENTQLLET 24 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 84
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=76.23 E-value=13 Score=30.75 Aligned_cols=53 Identities=15% Similarity=0.074 Sum_probs=22.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 321 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 321 e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+++.+..+++.....+...+.+...+-..++.++..+-+.+.-.-.|+..+++
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRq 69 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELRE 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333333333344443333444444444444444444444444443
No 85
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=76.01 E-value=37 Score=29.11 Aligned_cols=68 Identities=9% Similarity=0.207 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~l 364 (841)
.+..++++...+..++..++.....+...-....+.......++...++....+..++.-...++.+|
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666655555555555555554444444444444444444444444444444
No 86
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=75.37 E-value=45 Score=29.78 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 250 AKLQSALQEMQLQFKE 265 (841)
Q Consensus 250 ~~L~~~l~~l~~~l~~ 265 (841)
+.|+..++.++.++++
T Consensus 14 a~L~~D~~s~~~eleE 29 (167)
T 4gkw_A 14 ADLKQDTESLQKQLEE 29 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 87
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=75.06 E-value=2.1 Score=51.40 Aligned_cols=27 Identities=37% Similarity=0.671 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhchhH
Q 003183 110 EASCLRIQRDLRMYLAKKAYKDMCFSA 136 (841)
Q Consensus 110 ~~Aa~~IQ~~~R~~~~r~~~~~~r~aa 136 (841)
..+|+.||+.||||++|++|.++|.++
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367888888888888888888887664
No 88
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.90 E-value=28 Score=31.70 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
++......|+.++++++.....++..+.+++.... .++.+.+..+.++..++..++.++...-.|.+.|
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC---MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443321 1234445555556666666666665555555544
No 89
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=74.58 E-value=17 Score=27.85 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+.+|+..+..++.+|+.||..++.
T Consensus 37 ~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 37 SSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45667777777788888888877653
No 90
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=72.70 E-value=35 Score=29.00 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
.++.+|..++++|..+.+.|..|+..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444443
No 91
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.23 E-value=46 Score=28.49 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 213 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQF 263 (841)
Q Consensus 213 l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l 263 (841)
+.......+.++..|...+..++..+...+..+ .++..++++|...+
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~----~~ie~ElEeLTasL 63 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEA----DKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 334444455566666666666655554443332 44555555555444
No 92
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.87 E-value=65 Score=35.71 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
.++++++.++..|+.+|+.++.+.+.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555544
No 93
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=71.57 E-value=39 Score=27.34 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=20.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 321 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 321 e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+++.+..+++.....+..++.+...+-..++.++..+-+.+.-.-.|+..+++
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq 63 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333333333333333333333444444444444443344444433
No 94
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.24 E-value=52 Score=30.53 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 207 ARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK 269 (841)
Q Consensus 207 a~~~~~l~~~~~~le~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~ 269 (841)
...+..|+.....++.++.++...+. .+...+..+++++..++.++..++.+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~-----------eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIA-----------LKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555666666655554444 33344445555555555555444433
No 95
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=70.37 E-value=52 Score=28.33 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+.....+...+..++.++..++.++..++.
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666555544
No 96
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.29 E-value=13 Score=30.06 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
+...+..+..++.++.+.++.|..|+.++++.+
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455566667777777777777777776653
No 97
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=69.98 E-value=60 Score=36.10 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 338 KQALEAESKIVQLKTAMHRLEEKV 361 (841)
Q Consensus 338 ~~l~~~e~~~~~L~~e~~~Le~~l 361 (841)
..+..++..+.++..+|.+||..|
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666654
No 98
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=69.85 E-value=52 Score=28.15 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER 336 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~ 336 (841)
..+..+...++.+-..+...+.++++..+.+......+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 99
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=69.49 E-value=1e+02 Score=33.47 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=94.0
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCcCC---cchhhHHhhchHHHHHHHhhcccc
Q 003183 634 HWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCT---FSNGEYVKAGLAELELWCCQAKEE 710 (841)
Q Consensus 634 ~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r~~~cs---~s~G~qIr~nls~Le~W~~~~~~~ 710 (841)
.++.|+..+..++.-++ .+++|.+...++..+...+-..-++.|+. +.-|+ -.-|.+|+-.+..|..-+.+.+.
T Consensus 219 ~v~~i~~ti~dy~~d~~-~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~- 295 (399)
T 2fji_1 219 QAQQIADTLDEYLLDIK-PQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLD- 295 (399)
T ss_dssp HHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 78999999999998775 56999999999999999999999999997 55555 56688999999999999887652
Q ss_pred cccC----cHHHhHHHHHHHHHHhcccc-ccc--cHHHHHhccCCCCCHHHHHHHHh
Q 003183 711 YAGS----SWDELKHIRQAVGFLVIHQK-YRI--SYDEITNDLCPILSVQQLYRICT 760 (841)
Q Consensus 711 ~~~~----~~~~L~~l~Qa~~lLq~~kk-~~~--~~~~i~~~~C~~Ls~~Qi~kil~ 760 (841)
..+. ....+..|-+.+. |.+. + +.. .+..+. ...|-+++..+.+||.
T Consensus 296 ~~~~~~~~v~~~~~~l~~l~~-L~~d-~~~~i~~~~~~l~-~~ypD~~~~~V~aiL~ 349 (399)
T 2fji_1 296 GNESKDTLITQNFTVMEFFMD-LSCE-PIDSILDIWQKYL-EVYWDSRIDLLVGILK 349 (399)
T ss_dssp TCTTHHHHHHHHHHHHHHHHH-HHHS-CGGGHHHHHHHHH-TTCTTCCSHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHH-hcCC-cHHHHHHHHHHHH-HhCCCCCHHHHHHHHH
Confidence 1111 4567778888888 7765 3 222 223443 6789999999999995
No 100
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=67.17 E-value=65 Score=28.18 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+..+...+..|+.++..++.+...++.
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555544443
No 101
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=66.23 E-value=59 Score=27.37 Aligned_cols=24 Identities=13% Similarity=0.208 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 305 NEKLKTLVSSLEKKIDETEKKFEE 328 (841)
Q Consensus 305 ~~~L~~~l~~l~~~~~e~e~~~~e 328 (841)
...++.++..+++.+...+....+
T Consensus 16 m~~~eeel~~lke~l~k~e~~rke 39 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKE 39 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 102
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=66.03 E-value=74 Score=28.42 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 247 QENAKLQSALQEMQLQFKESKEK 269 (841)
Q Consensus 247 ~e~~~L~~~l~~l~~~l~~~~~~ 269 (841)
.|+.+|..++..++..++.+...
T Consensus 60 KEi~~Lrae~~~~QRn~~K~~~~ 82 (167)
T 4gkw_A 60 KEIGKLRAELGTAQRNLEKADQL 82 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 45555555555555555544433
No 103
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=65.05 E-value=5.1 Score=38.21 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh
Q 003183 107 MRREASCLRIQRDLRMYLAKKAYKD 131 (841)
Q Consensus 107 ~r~~~Aa~~IQ~~~R~~~~r~~~~~ 131 (841)
.++..||++||++||+|+.|+.+..
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 3456899999999999988876544
No 104
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.49 E-value=45 Score=25.83 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
..+++.++..|..+...|..++..|+.|+..|++.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777788888887777653
No 105
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=63.57 E-value=54 Score=26.05 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003183 354 MHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 354 ~~~Le~~l~~le~E~~~l~~ 373 (841)
.++|.+++-.+.-||..+++
T Consensus 48 ~ErLNDEiislNIENNlL~~ 67 (75)
T 3a7o_A 48 TERLNDELISGTIENNVLQQ 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHHHH
Confidence 34444444444555554443
No 106
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=61.46 E-value=8.2 Score=36.80 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 156 RQTRASILIQSHCRKYLARLHYMK 179 (841)
Q Consensus 156 ~~~~aA~~IQ~~~R~~~~r~~~~~ 179 (841)
++..||.+||++||.|+.|+.++.
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 456788999999999887766543
No 107
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=60.82 E-value=84 Score=27.30 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+..+..+..++..+++++..++.+...+..
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554433
No 108
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=59.19 E-value=1.1e+02 Score=28.26 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER 336 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~ 336 (841)
++.+......-++.+++....+.+..+.++.+++.....+
T Consensus 74 KyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~ 113 (147)
T 2b9c_A 74 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTV 113 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444443333
No 109
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=58.69 E-value=89 Score=26.92 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003183 343 AESKIVQLKTAMHRL 357 (841)
Q Consensus 343 ~e~~~~~L~~e~~~L 357 (841)
++..+..|+..+.-|
T Consensus 84 aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 84 AESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 110
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=58.02 E-value=68 Score=27.30 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 350 LKTAMHRLEEKVSDMETENQILRQQS 375 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~~~l~~~~ 375 (841)
....+.+|+.++.+|..||+.|.+.+
T Consensus 63 ~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999988743
No 111
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=57.86 E-value=42 Score=26.31 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
...++.++.+|+.+...|+.+++.|+.|+..|++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777777777777776654
No 112
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=57.51 E-value=3.2 Score=51.14 Aligned_cols=42 Identities=14% Similarity=-0.114 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 137 VCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKL 180 (841)
Q Consensus 137 i~iQs~~Rg~~aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~~ 180 (841)
..++.++|+..++..++ ....++..||+.||++..++.....
T Consensus 768 ~~Ll~WIr~k~a~l~~r--~~~~sl~~IQ~~ir~f~~fr~~ekp 809 (995)
T 2ycu_A 768 NELVQWINDKQASLESR--DFGDSIESVQSFMNAHKEYKKTEKP 809 (995)
T ss_dssp HHHHHHTTTTTCCCSCH--HHHHHHHHHHHHHHHHTTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHhcc
Confidence 34566666666544332 3446778899999988776665543
No 113
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.37 E-value=1.6e+02 Score=31.53 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 003183 254 SALQEMQLQF 263 (841)
Q Consensus 254 ~~l~~l~~~l 263 (841)
.++++|...+
T Consensus 67 ~rIe~L~~~L 76 (390)
T 1deq_A 67 SRINKLRDSL 76 (390)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 114
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.28 E-value=2.1e+02 Score=31.53 Aligned_cols=8 Identities=0% Similarity=-0.172 Sum_probs=4.7
Q ss_pred cchHHHHH
Q 003183 3 FLLNNFLT 10 (841)
Q Consensus 3 ~~f~eF~~ 10 (841)
+|++||++
T Consensus 141 ~Twdel~~ 148 (471)
T 3mq9_A 141 KTWEEIPA 148 (471)
T ss_dssp SBGGGHHH
T ss_pred CCHHHHHH
Confidence 45666655
No 115
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.82 E-value=1e+02 Score=26.72 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 337 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 337 ~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
..++...+..+..+..++..++..+..++.+..
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666655
No 116
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.98 E-value=84 Score=28.06 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 003183 250 AKLQSALQEMQLQFK 264 (841)
Q Consensus 250 ~~L~~~l~~l~~~l~ 264 (841)
..|+..+..|+.+++
T Consensus 43 ~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 43 LQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 117
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=54.58 E-value=88 Score=25.64 Aligned_cols=19 Identities=5% Similarity=0.323 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 349 QLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 349 ~L~~e~~~Le~~l~~le~E 367 (841)
.|+.+..+++..+..++..
T Consensus 50 ~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 50 RLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444333333
No 118
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.43 E-value=1.2e+02 Score=27.20 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 250 AKLQSALQEMQLQFKESK 267 (841)
Q Consensus 250 ~~L~~~l~~l~~~l~~~~ 267 (841)
..++..+..++.++....
T Consensus 78 ~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 344444444444444433
No 119
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=54.32 E-value=53 Score=28.33 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVS 362 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~ 362 (841)
+..|+.+++.|++.+.
T Consensus 77 ~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 77 HSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 120
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=53.82 E-value=12 Score=37.78 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 334 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 334 ~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++..++..+..++..|.+++..++.++.+|++|++.+++
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555566666777888888899999999999998876
No 121
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.76 E-value=1.3e+02 Score=27.19 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003183 250 AKLQSALQEMQLQFKESK 267 (841)
Q Consensus 250 ~~L~~~l~~l~~~l~~~~ 267 (841)
..++..+..++.++....
T Consensus 80 ~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 122
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=52.83 E-value=2.7e+02 Score=30.77 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=7.8
Q ss_pred chhHHHhhHHHHHHHH
Q 003183 501 HMAYWLSNTSTLLFLL 516 (841)
Q Consensus 501 ~l~fWLsN~~~Ll~~l 516 (841)
..-|||.| +-+|.|
T Consensus 293 ~gEfWLGl--e~ih~L 306 (464)
T 1m1j_B 293 PGEYWLGN--DKISQL 306 (464)
T ss_dssp ECSEECCH--HHHHHH
T ss_pred ceeeEecc--cceeec
Confidence 45678775 334544
No 123
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.82 E-value=1.2e+02 Score=26.97 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSL 315 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l 315 (841)
.+..|..++..|+.+++.+
T Consensus 16 ~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 16 LIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556665555555555
No 124
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.50 E-value=96 Score=25.46 Aligned_cols=50 Identities=26% Similarity=0.249 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 350 (841)
Q Consensus 301 L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L 350 (841)
|-.|...|+-.+.+++.+...-++++...+.+...+..++...+..+..|
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL 73 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 34444444444444444444444444333333333333333333333333
No 125
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.22 E-value=1.2e+02 Score=26.40 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 335 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 335 ~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
.+..+....+..+..+...+..++.++.+++..+...-
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666777777777778888877777776654
No 126
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=52.15 E-value=1.1e+02 Score=26.32 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 248 ENAKLQSALQEMQLQFKESKEKLMK 272 (841)
Q Consensus 248 e~~~L~~~l~~l~~~l~~~~~~l~~ 272 (841)
.+++|+.++...+.++..+..++..
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkd 60 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKD 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777666655444
No 127
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.48 E-value=76 Score=26.06 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.+.+..+..|..+...|+.++..|+.|+..+++
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888888888888888888875
No 128
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=51.30 E-value=77 Score=26.59 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 342 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 342 ~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+.+..+..|+.+...|+.++..|+.|+..++.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888888888888888776
No 129
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=50.81 E-value=2.2e+02 Score=29.02 Aligned_cols=169 Identities=13% Similarity=0.169 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHH
Q 003183 578 FKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPV 657 (841)
Q Consensus 578 ~~q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~ 657 (841)
|+..+..-++.+|.. .++.+|.|+|++.- +....-... ... .. +...+-+...+..++.++.-++.. +.|.
T Consensus 78 ~~~ll~~gi~~Lf~~---~ikprLr~~l~~f~-~~~y~l~ee-e~~-~~--e~~d~~~~~F~~~w~~ll~p~k~~-Lt~~ 148 (263)
T 3hr0_A 78 FRDLLQEGLTELNST---AIKPQVQPWINSFF-SVSHNIEEE-EFN-DY--EANDPWVQQFILNLEQQMAEFKAS-LSPV 148 (263)
T ss_dssp HHHHHHHHHHHHHHH---HTHHHHHHHHHGGG-GSCBSCCHH-HHH-HH--HHSCCSHHHHHHHHHHHHHHHHHH-SCHH
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHHHHHh-cccccCCHh-HHh-hh--hcccHHHHHHHHHHHHHHHHHHHH-cChH
Confidence 445555556665544 36777888886422 111110000 000 00 001122455555555555555543 3355
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhccCCcCCcchhhHHhhchHHHHHHHhhcccccccCcHHHhHHHHHHHHHHhccccccc
Q 003183 658 LVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRI 737 (841)
Q Consensus 658 l~~q~f~qlf~~in~~~fN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~ 737 (841)
....+++-+..++...+=..++. .-++-==|+++--=++.|-.++.+.+ .....+.|..+.|.+-+|-+.. ..
T Consensus 149 ~y~~Ll~~~~~~la~~lE~~i~~--~~fn~lGal~LdrDvr~li~~~~~~~---~~~lRekF~RL~QI~~lLnle~--~e 221 (263)
T 3hr0_A 149 IYDSLTGLMTSLVAVELEKVVLK--STFNRLGGLQFDKELRSLIAYLTTVT---TWTIRDKFARLSQMATILNLER--VT 221 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHTTS---CTTHHHHTHHHHHHHHHHTCSS--GG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCcCchhHHHHHHHHHHHHHHHHhcc---chhhhHHHHHHHHHHHHHcCCC--hH
Confidence 55566666666665555444443 33666678898888999999987744 2457899999999999999983 11
Q ss_pred cHHHH----HhccCCCCCHHHHHHHHhcC
Q 003183 738 SYDEI----TNDLCPILSVQQLYRICTLY 762 (841)
Q Consensus 738 ~~~~i----~~~~C~~Ls~~Qi~kil~~Y 762 (841)
+..+. ...+-|.|||..+.+++..=
T Consensus 222 ev~d~~~~~~~~~~W~Ls~~E~r~il~lR 250 (263)
T 3hr0_A 222 EILDYWGPNSGPLTWRLTPAEVRQVLALR 250 (263)
T ss_dssp GGGGTSGGGGTTCCCCSCHHHHHHHHTTB
T ss_pred HHHHHhcccCCCccccCCHHHHHHHHHhh
Confidence 11111 12356899999999999753
No 130
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=50.76 E-value=1.6e+02 Score=28.93 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003183 298 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ 339 (841)
Q Consensus 298 ~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~ 339 (841)
..+++.++..|..+.+.+.....++..++++....+.+.+.+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666666666666666555555544
No 131
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=50.69 E-value=81 Score=24.07 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMET 366 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~ 366 (841)
..+..+.+.+....+.|.+++.
T Consensus 33 ~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 33 EKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 132
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=50.44 E-value=1.3e+02 Score=26.28 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 350 L~~e~~~Le~~l~~le~E~ 368 (841)
+..++++|.+++..|+.++
T Consensus 88 l~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 4444555555555544444
No 133
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=50.09 E-value=1.1e+02 Score=25.36 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 342 EAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 342 ~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+.+..+..+..++..++.++...-.|.+.+
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~q~~EYq~L 59 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMARHLREYQDL 59 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544444443
No 134
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=49.78 E-value=39 Score=27.82 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+..+++|...+.+...+|.+|+..+..+.+
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555444
No 135
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.75 E-value=27 Score=26.50 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFE 327 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~ 327 (841)
..++.|..|+..|+..++.|.++++++..++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777766666666655443
No 136
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=49.56 E-value=3.1e+02 Score=30.38 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
...+..|+..++.++.+|.+|+.....+..
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777788888888877766544
No 137
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.16 E-value=1.4e+02 Score=26.28 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
.++.+|+.++..|..++.+...|++.++..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346666666666666666666666666654
No 138
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.74 E-value=1.5e+02 Score=26.44 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 338 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 338 ~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++..++..+..+++.+..+++++..+...++.+.+
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555666666666666666666655544
No 139
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.48 E-value=33 Score=27.58 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
...+..+...|+.++..|..|+..
T Consensus 45 ~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 45 HSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666654
No 140
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.16 E-value=1e+02 Score=23.97 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+++.++..|..+...|..++..|+.|+..++.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666544
No 141
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=45.76 E-value=57 Score=25.36 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+++.++..|..+...|..++..|..|+..|++
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777777777777666544
No 142
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=45.29 E-value=1.2e+02 Score=25.13 Aligned_cols=32 Identities=3% Similarity=0.176 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 342 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 342 ~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
++...++.|+.++.+|+-.++.+.-++..+++
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555433
No 143
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=45.14 E-value=4.4e+02 Score=32.33 Aligned_cols=29 Identities=17% Similarity=-0.007 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 003183 118 RDLRMYLAKKAYKDMCFSAVCIQTGMRGM 146 (841)
Q Consensus 118 ~~~R~~~~r~~~~~~r~aai~iQs~~Rg~ 146 (841)
+++|+..++........++..||+.++++
T Consensus 780 ~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f 808 (1010)
T 1g8x_A 780 QWINDKQASLESRDFGDSIESVQSFMNAH 808 (1010)
T ss_dssp HHHHHHHHHHHCCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHH
Confidence 34444444444444445666677766655
No 144
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.04 E-value=80 Score=22.36 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 003183 348 VQLKTAMHRLE 358 (841)
Q Consensus 348 ~~L~~e~~~Le 358 (841)
..|..++.+|+
T Consensus 34 anlrdeiarle 44 (52)
T 3he5_B 34 ANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 145
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.65 E-value=94 Score=24.08 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 003183 217 KNKLEKQVEELT 228 (841)
Q Consensus 217 ~~~le~kv~el~ 228 (841)
...|+.++.+|+
T Consensus 24 ~~~Le~~v~~L~ 35 (62)
T 1jnm_A 24 IARLEEKVKTLK 35 (62)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 146
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=44.07 E-value=1.5e+02 Score=34.10 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=2.3
Q ss_pred HHHHHH
Q 003183 346 KIVQLK 351 (841)
Q Consensus 346 ~~~~L~ 351 (841)
++.+|+
T Consensus 575 ei~~l~ 580 (592)
T 1f5n_A 575 EIQDLQ 580 (592)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 147
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.85 E-value=1.2e+02 Score=33.97 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 003183 752 VQQLYRICTLYWDDNYNTRSVSPNVISSM 780 (841)
Q Consensus 752 ~~Qi~kil~~Y~~d~~e~~~v~~~~i~~v 780 (841)
+.=|..||.+|..++..- .||+.+--++
T Consensus 441 ~R~l~alLEn~q~~dG~i-~iP~~L~Py~ 468 (501)
T 1wle_A 441 PRLLIALLESYQQKDGSV-LVPPALQPYL 468 (501)
T ss_dssp HHHHHHHHHHHBCTTSCE-ECCGGGHHHH
T ss_pred HHHHHHHHHhCCCCCCCE-eCChhhcCcc
Confidence 567899999998766643 6777776666
No 148
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=43.62 E-value=47 Score=36.42 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=6.4
Q ss_pred HhhchHHHHHHHhh
Q 003183 693 VKAGLAELELWCCQ 706 (841)
Q Consensus 693 Ir~nls~Le~W~~~ 706 (841)
|-|.=|.|-..+++
T Consensus 332 iPyRdSkLT~LLqd 345 (412)
T 3u06_A 332 IPYRNSKLTHLLMP 345 (412)
T ss_dssp CCGGGSHHHHHHGG
T ss_pred CCccccHHHHHHHH
Confidence 34444444444443
No 149
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=42.99 E-value=98 Score=23.22 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
..|.+.+.+.+++|.+|.++++.
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 150
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=42.89 E-value=1.4e+02 Score=25.54 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 305 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ-----ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 305 ~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~-----l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
..+|+..+.++++.++......+-+.+....-... ....+.++.+....++.|+.++.+++.-+..+.
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555444444443332211 111234445555555555555555555544443
No 151
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=41.87 E-value=73 Score=29.21 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 355 HRLEEKVSDMETENQIL 371 (841)
Q Consensus 355 ~~Le~~l~~le~E~~~l 371 (841)
..++.++..|+.+...+
T Consensus 90 a~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 90 DQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 33333333344444443
No 152
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=41.50 E-value=1.7e+02 Score=24.99 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 339 QALEAESKIVQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 339 ~l~~~e~~~~~L~~e~~~Le~~l~~le~E~ 368 (841)
+....+..+..+..++..++.++.+++..+
T Consensus 73 ~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 73 KLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555544
No 153
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.50 E-value=1.2e+02 Score=34.00 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+.+-+|..+..++..++++|+.+..++.+++..+++..++ ..++..+...+++++..+++++..+++++..+
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~----~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKED----AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666665555555555443322111 12233345566677777777777777776653
No 154
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=41.28 E-value=4.1e+02 Score=29.45 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
..+-+.++..-+..+.+.++++..++
T Consensus 82 ~AeY~~kl~aYe~~~~~~~k~lae~e 107 (497)
T 3iox_A 82 LADYPVKLKAYEDEQTSIKAALAELE 107 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555555555555543
No 155
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.23 E-value=80 Score=25.47 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 003183 353 AMHRLEEKVS 362 (841)
Q Consensus 353 e~~~Le~~l~ 362 (841)
++..|+.++.
T Consensus 55 eI~~LqseLD 64 (72)
T 3nmd_A 55 LIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 156
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.03 E-value=3.6e+02 Score=28.77 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 003183 220 LEKQVEELTWRLQ 232 (841)
Q Consensus 220 le~kv~el~~~l~ 232 (841)
++++|.+|+.+|+
T Consensus 65 ~~~rIe~L~~~L~ 77 (390)
T 1deq_A 65 FTSRINKLRDSLF 77 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 157
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=40.69 E-value=1.1e+02 Score=22.60 Aligned_cols=8 Identities=0% Similarity=-0.047 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 003183 346 KIVQLKTA 353 (841)
Q Consensus 346 ~~~~L~~e 353 (841)
.+.++.++
T Consensus 26 ~c~~~eQE 33 (48)
T 3vmx_A 26 SCSEKEQE 33 (48)
T ss_dssp HHHHHHHH
T ss_pred HccHHHHH
Confidence 33333333
No 158
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=40.68 E-value=22 Score=33.47 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=28.8
Q ss_pred cHHHhHHHHHHHHHHhccccccccHHH-HHhccCCCCCHHHHHHHHh
Q 003183 715 SWDELKHIRQAVGFLVIHQKYRISYDE-ITNDLCPILSVQQLYRICT 760 (841)
Q Consensus 715 ~~~~L~~l~Qa~~lLq~~kk~~~~~~~-i~~~~C~~Ls~~Qi~kil~ 760 (841)
..+.|-.|+.|+++|++. ...+.-. .+-++--.-||.+|.+++.
T Consensus 95 d~~~l~eLl~AAnyL~I~--~Lld~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 95 DQGTLFELILAANYLDIK--GLLDVTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHSSCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 347899999999999997 3322210 1112223459999999976
No 159
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.89 E-value=1.1e+02 Score=33.98 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+.+-++..+..++..++++|+.+..++.+++..+++..+ +..++..+...+++++..+++++..++++...+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE----PVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666555555555544322111 112233445556666777777777777766554
No 160
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=39.81 E-value=1.1e+02 Score=25.37 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 003183 350 LKTAMHRLEEKVS 362 (841)
Q Consensus 350 L~~e~~~Le~~l~ 362 (841)
+++.+++.+..|.
T Consensus 63 le~~i~rhk~~i~ 75 (84)
T 1gmj_A 63 LQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 161
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.34 E-value=1.2e+02 Score=25.09 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+.+|...++.+++++..++++|..++.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677777777777776654
No 162
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=39.08 E-value=21 Score=28.62 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++-|++.+.+|.+++..|+.||..++.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888999999999999999999987
No 163
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.98 E-value=68 Score=35.04 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 352 TAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 352 ~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+.+...+....+|..+++.++.
T Consensus 38 ~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 38 EILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333334444444444443
No 164
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.50 E-value=1.6e+02 Score=24.12 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
...+.++.+......+|..++.+++.++..++
T Consensus 41 i~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 41 QNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555543
No 165
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=37.62 E-value=1e+02 Score=25.47 Aligned_cols=29 Identities=14% Similarity=0.307 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+.+|.+.++.+++++..|+.+|..++.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666543
No 166
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=37.37 E-value=2.9e+02 Score=26.67 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 003183 305 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLST 379 (841)
Q Consensus 305 ~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~~~~~~ 379 (841)
....+..+..++..+.+-|.++...+.....+..++...|.++..|+.++..++..+...+.....++-.-++.|
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~s 153 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKT 153 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBSS
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhhh
Confidence 334445555555555555555555555555666666677777777888888888888777777777766544433
No 167
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=36.88 E-value=2e+02 Score=24.72 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFE 327 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~ 327 (841)
-..+++|+.|....+.++...++++.+.++..+
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E 66 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVE 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346677888888888888888777776666544
No 168
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=36.54 E-value=1e+02 Score=25.67 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 344 ESKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 344 e~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
+..+.++..++..++.++...-.|.+
T Consensus 34 q~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 169
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.20 E-value=4.5e+02 Score=28.51 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..+..|+..+..++.+|+.|+..+..+..
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555554443
No 170
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=36.11 E-value=2.1e+02 Score=24.65 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 363 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~ 363 (841)
++...--.++.|..+..++.=+++-++..+++.+.....+..+..+....+..++.....|..++..
T Consensus 10 KyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 10 KYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666666666666666666666655555444444443333333333333333333333
No 171
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=35.81 E-value=4.7e+02 Score=28.60 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQI 370 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~ 370 (841)
+.-|+..++.+..+|++||.....
T Consensus 134 IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 134 IKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666555554
No 172
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.66 E-value=4.8e+02 Score=28.32 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=4.8
Q ss_pred chhHHHhh
Q 003183 501 HMAYWLSN 508 (841)
Q Consensus 501 ~l~fWLsN 508 (841)
..-|||.|
T Consensus 223 ~gEfWLGl 230 (409)
T 1m1j_C 223 TTEFWLGN 230 (409)
T ss_dssp CCCEECCH
T ss_pred CccEEeec
Confidence 45666665
No 173
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.65 E-value=1.7e+02 Score=32.63 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 330 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~ 330 (841)
+++-+|..+..++..++++++.+.....+++..+.
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555566666666655555555554443
No 174
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.53 E-value=1.4e+02 Score=32.76 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+.+-++..+...+..++++++.+..++.+++.. +..+ +..++..+...+++++..+++++..+++++..+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK--APPE----EKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--SCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777666666665554 1111 112233445556666777777777777666543
No 175
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=34.41 E-value=2e+02 Score=26.31 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003183 583 AAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKI 662 (841)
Q Consensus 583 ~~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~ 662 (841)
..-++.||..++.-+...+...+. .... + .+.+++.++.|.+.+.++|.+|.. .+||.-++-+
T Consensus 18 ~eH~~eI~~KLv~Im~~r~~~~l~-~Wd~----k-----------~pvpS~~m~tl~Ke~~kLH~~Ls~-~LP~~~v~~I 80 (141)
T 3n1e_A 18 HDHIAEISAKLVAIMDSLFDKLLS-KYEV----K-----------APVPSPCFRNICKQMTKMHEAIFD-LLPEEQTQML 80 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCC----C-----------SSSSCHHHHHHHHHHHHHHHHHTT-TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhcc----C-----------CCCCCHHHHHHHHHHHHHHHHHHh-hCCHHHHHHH
Confidence 445667777776665555554442 1110 0 024578899999999999999965 6899999999
Q ss_pred HHHHHHhHhHH
Q 003183 663 FTQTFSYINVQ 673 (841)
Q Consensus 663 f~qlf~~in~~ 673 (841)
|..+|.-.+-.
T Consensus 81 m~~Vf~~fk~~ 91 (141)
T 3n1e_A 81 FLRINASYKLH 91 (141)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998755444
No 176
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.25 E-value=1.1e+02 Score=29.42 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEK 324 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~ 324 (841)
.++.|..|+..|.++++....+++.+++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444333333
No 177
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.45 E-value=1.1e+02 Score=24.99 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKVS 362 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~ 362 (841)
.+..|+.++..|.+++.
T Consensus 43 ~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 43 TGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 178
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.07 E-value=74 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 304 ENEKLKTLVSSLEKKIDETEKKFE 327 (841)
Q Consensus 304 e~~~L~~~l~~l~~~~~e~e~~~~ 327 (841)
+.+.|+.+.++|+.+++++.++.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 179
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.94 E-value=2.5e+02 Score=24.50 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 003183 355 HRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 355 ~~Le~~l~~le~E~~~l~~~ 374 (841)
+++..+...|+.++..++.+
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33444455555555555443
No 180
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.85 E-value=97 Score=33.79 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 003183 639 IDSLNTLLSTL 649 (841)
Q Consensus 639 l~~L~~~~~~l 649 (841)
|..|..+...|
T Consensus 327 L~aLg~vI~aL 337 (403)
T 4etp_A 327 LSALGDVIHAL 337 (403)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344443333
No 181
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=32.25 E-value=1e+02 Score=19.86 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+..|++++..|+.++..|+-|...+++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666666666666666665554
No 182
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.84 E-value=2.1e+02 Score=23.39 Aligned_cols=24 Identities=8% Similarity=0.308 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~l 364 (841)
..++....++...++.++.+...|
T Consensus 49 ~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 49 TRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443
No 183
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=31.12 E-value=2.7e+02 Score=24.32 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 249 NAKLQSALQEMQLQFKESKEKLMK 272 (841)
Q Consensus 249 ~~~L~~~l~~l~~~l~~~~~~l~~ 272 (841)
+++|+.++...+.+|..+..++..
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkd 47 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRD 47 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777766655444
No 184
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.34 E-value=2.6e+02 Score=23.91 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 249 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETE 323 (841)
Q Consensus 249 ~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~~~e~e 323 (841)
.++|+..+.+++.+++..... ..-.......-.+-..+-+... -+.++.+.....+.|+.++..++.-+.+++
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~GD~~s-~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQMGDPAS-LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGGCCGGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666554332 1112222222222222211111 133445555555555555555544444443
No 185
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.83 E-value=2.9e+02 Score=30.97 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE----RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~----~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+.+-++..+..++..++++++.+..++.+++.++.+..+. ...+...+..+...+++++..+++++..+++++..+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666665555555555443322100 000112233345556666666666666666665543
No 186
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=29.56 E-value=24 Score=21.87 Aligned_cols=16 Identities=13% Similarity=0.031 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 003183 111 ASCLRIQRDLRMYLAK 126 (841)
Q Consensus 111 ~Aa~~IQ~~~R~~~~r 126 (841)
-|+..||.+||.+..|
T Consensus 7 YA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3666777777766554
No 187
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.51 E-value=1.3e+02 Score=20.56 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMET 366 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~ 366 (841)
+++.+|-.+...|+.++.+|++
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333334444444444433
No 188
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.38 E-value=2.5e+02 Score=31.36 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
...+.+++..+++++..++.+...+..+
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888877776553
No 189
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.08 E-value=6.9e+02 Score=28.48 Aligned_cols=7 Identities=14% Similarity=0.595 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 003183 23 ACKRLLE 29 (841)
Q Consensus 23 ~~~~iL~ 29 (841)
+|..|+.
T Consensus 269 l~~~i~~ 275 (592)
T 1f5n_A 269 FCSYIFS 275 (592)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 3344443
No 190
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=28.81 E-value=2e+02 Score=22.08 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
...+.++++|-+-...|.+++..++.+++.++.
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 334445555555555555555555555555544
No 191
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.48 E-value=47 Score=33.58 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 340 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 340 l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
+.+++.++..|....+.|.+.+..++.|+..++.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556566666666666666666666553
No 192
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=27.94 E-value=2.5e+02 Score=22.95 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 249 NAKLQSALQEMQLQFKESKEKLMK 272 (841)
Q Consensus 249 ~~~L~~~l~~l~~~l~~~~~~l~~ 272 (841)
+++|+.++...+.+|..+..++..
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkd 30 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKD 30 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777666555444
No 193
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.93 E-value=1.3e+02 Score=20.62 Aligned_cols=23 Identities=48% Similarity=0.478 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKK 318 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~ 318 (841)
+++++|..++..|+.++..|++-
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 35555555555555555555543
No 194
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.74 E-value=1.7e+02 Score=22.79 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 003183 301 LTSENEKLKTLVS 313 (841)
Q Consensus 301 L~~e~~~L~~~l~ 313 (841)
|+.+|..|+.++.
T Consensus 35 L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 35 LEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 195
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=27.48 E-value=1.2e+02 Score=30.27 Aligned_cols=18 Identities=22% Similarity=0.494 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003183 312 VSSLEKKIDETEKKFEET 329 (841)
Q Consensus 312 l~~l~~~~~e~e~~~~e~ 329 (841)
++++++.+.+++.+++++
T Consensus 8 vd~~EErIs~le~rleei 25 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEI 25 (233)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 196
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.21 E-value=1.3e+02 Score=20.27 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKV 361 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l 361 (841)
++++|-.+...|+.++
T Consensus 8 KVEell~~~~~le~EV 23 (33)
T 2wq1_A 8 KIEENTSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3333333333333333
No 197
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.20 E-value=2.4e+02 Score=22.55 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 346 KIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 346 ~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
.+...+.++.+++..++.|+.|++.++
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455666777777777777766553
No 198
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=26.97 E-value=3.3e+02 Score=24.12 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 003183 352 TAMHRLE 358 (841)
Q Consensus 352 ~e~~~Le 358 (841)
.++...+
T Consensus 89 ~~ik~qe 95 (119)
T 3etw_A 89 AEMEQQK 95 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 199
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=26.82 E-value=2.9e+02 Score=23.38 Aligned_cols=79 Identities=9% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDETE---KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~e---~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
...+...+.....-..++++|++.+...+ ..+.=++....--..+.......-..+..+.+.|.+++..++.++..+
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 003183 372 RQ 373 (841)
Q Consensus 372 ~~ 373 (841)
..
T Consensus 88 ~~ 89 (94)
T 3jsv_C 88 KV 89 (94)
T ss_dssp --
T ss_pred HH
No 200
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.81 E-value=1.5e+02 Score=25.22 Aligned_cols=14 Identities=7% Similarity=0.304 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKV 361 (841)
Q Consensus 348 ~~L~~e~~~Le~~l 361 (841)
..+..++..++.++
T Consensus 47 ~~lE~eL~~~r~e~ 60 (95)
T 3mov_A 47 TDKEREMAEIRDQM 60 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 201
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.53 E-value=4e+02 Score=25.51 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 338 KQALEAESKIVQLKTAMHRLEEKVSDMETE 367 (841)
Q Consensus 338 ~~l~~~e~~~~~L~~e~~~Le~~l~~le~E 367 (841)
.++...+.++..|++++..++.+....+..
T Consensus 34 ~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~ 63 (190)
T 4emc_A 34 EKLDTKATEIKQLQKQIDSLNAQVKELKTQ 63 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 333344444555555555555555443333
No 202
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.13 E-value=2.8e+02 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 210 TGALQAAKNKLEKQVEELTWRLQ 232 (841)
Q Consensus 210 ~~~l~~~~~~le~kv~el~~~l~ 232 (841)
+..|+..+..||+.+.+++.+..
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~ 27 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLA 27 (86)
T ss_dssp -------CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666655444
No 203
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.35 E-value=3.3e+02 Score=23.58 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE 342 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~ 342 (841)
.++++....+.++.+|..++.+++...+.++++++---.+|++
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544443333333
No 204
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.23 E-value=2.3e+02 Score=21.68 Aligned_cols=10 Identities=50% Similarity=0.783 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 003183 218 NKLEKQVEEL 227 (841)
Q Consensus 218 ~~le~kv~el 227 (841)
..|+.++..|
T Consensus 25 ~~Le~~~~~L 34 (61)
T 1t2k_D 25 QSLEKKAEDL 34 (61)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 205
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=25.10 E-value=1.1e+02 Score=20.69 Aligned_cols=9 Identities=11% Similarity=0.229 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 003183 353 AMHRLEEKV 361 (841)
Q Consensus 353 e~~~Le~~l 361 (841)
+...|+.++
T Consensus 16 ~~~~Le~EV 24 (34)
T 3c3f_A 16 XLYHXENEX 24 (34)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHHHHH
Confidence 333333333
No 206
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.86 E-value=3e+02 Score=22.82 Aligned_cols=28 Identities=4% Similarity=0.052 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 295 HAVVEELTSENEKLKTLVSSLEKKIDET 322 (841)
Q Consensus 295 ~~~~~~L~~e~~~L~~~l~~l~~~~~e~ 322 (841)
..++..+..+...++.+++.+..+=.++
T Consensus 55 ~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 55 HEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665554443
No 207
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.70 E-value=2e+02 Score=27.86 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 349 QLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 349 ~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+|...++.+++++..|++||..+
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 208
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.44 E-value=2.9e+02 Score=30.46 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQILRQQ 374 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~l~~~ 374 (841)
...+.++...+++++..++.+...+..+
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777776553
No 209
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=24.41 E-value=1.5e+02 Score=19.88 Aligned_cols=9 Identities=11% Similarity=0.036 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 003183 353 AMHRLEEKV 361 (841)
Q Consensus 353 e~~~Le~~l 361 (841)
+...|+.++
T Consensus 15 ~~~~Le~EV 23 (33)
T 3c3g_A 15 KXYHXENXL 23 (33)
T ss_dssp HHHHHHHHH
T ss_pred HhhHHHHHH
Confidence 333333333
No 210
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.20 E-value=2.7e+02 Score=22.19 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 338 KQALEAESKIVQLKTAMHRLEEKVSDME 365 (841)
Q Consensus 338 ~~l~~~e~~~~~L~~e~~~Le~~l~~le 365 (841)
..+...+..+.+++..+..|+-+|+.++
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345556667777777777777766553
No 211
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.09 E-value=1.5e+02 Score=25.15 Aligned_cols=22 Identities=18% Similarity=-0.003 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003183 211 GALQAAKNKLEKQVEELTWRLQ 232 (841)
Q Consensus 211 ~~l~~~~~~le~kv~el~~~l~ 232 (841)
..|+..+..||+.+.+++.+..
T Consensus 15 ~~Lq~~~~~LE~~l~e~E~~~~ 36 (95)
T 3mov_A 15 FQGQKESRACLERIQELEDLLA 36 (95)
T ss_dssp ---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666655444
No 212
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.06 E-value=2.1e+02 Score=23.49 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+..|..+++.++++|..|++||..+
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554443
No 213
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.99 E-value=3.3e+02 Score=23.08 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 249 NAKLQSALQEMQLQFKESKEKLMK 272 (841)
Q Consensus 249 ~~~L~~~l~~l~~~l~~~~~~l~~ 272 (841)
+++|+.++...+.+|..+..++..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkd 30 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKD 30 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666555444
No 214
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=23.83 E-value=57 Score=29.85 Aligned_cols=90 Identities=8% Similarity=0.087 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHhHhHHHHHhhhccCCcCCcchhhHHhhchHHHHHHHhhcccccccCcHHHhHHHHHHHHHHhcc
Q 003183 653 FVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIH 732 (841)
Q Consensus 653 ~v~~~l~~q~f~qlf~~in~~~fN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~ 732 (841)
+|++.+..+++.++-|.-+...- ...+-+. .-.-..+.+|=.+ +..-..+.|-.|+.|++.|+++
T Consensus 43 ~V~~~iL~kVieyc~~h~~~~~~----~~~~~~~-------~~~~~~i~~wD~~----F~~vd~~~l~eLi~AAnyL~I~ 107 (141)
T 1fs1_B 43 NVNAAILKKVIQWCTHHKDDPPP----PEDDENK-------EKRTDDIPVWDQE----FLKVDQGTLFELILAANYLDIK 107 (141)
T ss_dssp TCCHHHHHHHHHHHHHHTTCC----------------------------HHHHH----HTCSCHHHHHHHHHHHHHHTCH
T ss_pred CcCHHHHHHHHHHHHHhccCCCc----ccccccc-------ccchhhhhHHHHH----HHhCCHHHHHHHHHHHHHHhhh
Confidence 57777777777777665542100 0000000 1112346677554 2222347889999999999997
Q ss_pred ccccccHH--HHHhccCCCCCHHHHHHHHh
Q 003183 733 QKYRISYD--EITNDLCPILSVQQLYRICT 760 (841)
Q Consensus 733 kk~~~~~~--~i~~~~C~~Ls~~Qi~kil~ 760 (841)
...+.- .+. ++--.=||.+|.++++
T Consensus 108 --~Lldl~c~~vA-~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 108 --GLLDVTCKTVA-NMIKGKTPEEIRKTFN 134 (141)
T ss_dssp --HHHHHHHHHHH-HHHTTCCHHHHHHHTC
T ss_pred --HHHHHHHHHHH-HHHcCCCHHHHHHHcC
Confidence 333221 111 1223358888888875
No 215
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=23.37 E-value=1.4e+02 Score=29.78 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 314 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 357 (841)
Q Consensus 314 ~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~L 357 (841)
++...++++|.++.+++...++.....+..+..+..+++.+.+|
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL 46 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEI 46 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444333333333333333333333
No 216
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.24 E-value=1.1e+02 Score=33.55 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 296 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 296 ~~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
+.+-++..+..++..++++++.+..++.+++..+++..++ ..++..+...+++++..+++++..++++...+-
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD----TTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC----TTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777777666666666554322111 112223455666777777777777777776543
No 217
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=23.16 E-value=5.7e+02 Score=25.46 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 357 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~L 357 (841)
.+..+.+-|.-+..-...++.++..+++.+...+..+..++..+|..=..|..++...
T Consensus 160 ~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V 217 (242)
T 3uux_B 160 TLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQI 217 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333444444444445556666666666555555544444443333333333333
No 218
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.14 E-value=1.9e+02 Score=19.99 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 349 QLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 349 ~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+.++++..|+.+++.|++|.+.+
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666665543
No 219
>3gcg_B MAP, L0028 (mitochondria associated protein); CDC42, complex, alternative splicing, cell membrane, GTP-binding, lipoprotein, membrane; 2.30A {Escherichia coli}
Probab=23.11 E-value=4e+02 Score=25.08 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=61.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccCCCCCCCCCCccccHHHHHHH---HHHHHHH
Q 003183 572 KYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDS---LNTLLST 648 (841)
Q Consensus 572 ~~~~~~~~q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~il~~---L~~~~~~ 648 (841)
-||+-.+-+.+..+...--..|-+..+.+|=..++..++-+-.. ..-..++..++.- |..-++.
T Consensus 50 vy~Sr~INk~ID~~c~~n~~~Is~e~K~rIF~~Ie~~~~~~LD~-------------naAQSSI~H~l~~n~~f~kK~d~ 116 (172)
T 3gcg_B 50 TYISRTVNRTLDDYCRSNNSVISKETKGHIFRAVENALQQPLDM-------------NGAQSSIGHFLQSNKYFNQKVDE 116 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTCCCCT-------------TCCCCHHHHHHHTCHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHhCCccCh-------------hhhhhhHHHHHhccHHHHHHHHH
Confidence 34555566666665554434444555666666666554322111 1124456666655 8888999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhHhHHHHHhhh
Q 003183 649 LKQNFVPPVLVQKIFTQTFSYINVQLFNSLL 679 (841)
Q Consensus 649 l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll 679 (841)
|+..||++.+..++-..+..-|+-..|=..+
T Consensus 117 Lc~~g~d~~vrn~t~~~i~n~iaD~~fEk~~ 147 (172)
T 3gcg_B 117 QCGKRVDPITRFNTQTKMIEQVSQEIFERNF 147 (172)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999888888887776655
No 220
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.06 E-value=2.5e+02 Score=21.22 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003183 299 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKI 332 (841)
Q Consensus 299 ~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~ 332 (841)
-.|..+...|+++...+.+.+++..+.+.++++.
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444444433
No 221
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.92 E-value=1.8e+02 Score=30.69 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
.++..|+..+..++.+|.+|+..+..++.
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555554444443
No 222
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.37 E-value=3e+02 Score=21.97 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003183 247 QENAKLQSALQEMQLQF 263 (841)
Q Consensus 247 ~e~~~L~~~l~~l~~~l 263 (841)
.|+..|...+..|..++
T Consensus 50 ~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 50 LENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555544444
No 223
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.27 E-value=76 Score=19.71 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 300 ELTSENEKLKTLVSSLEKKID 320 (841)
Q Consensus 300 ~L~~e~~~L~~~l~~l~~~~~ 320 (841)
.|...+.+|++++..++-++.
T Consensus 4 rlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 345556666666666554443
No 224
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=22.08 E-value=1.6e+02 Score=19.91 Aligned_cols=8 Identities=13% Similarity=0.389 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 003183 353 AMHRLEEK 360 (841)
Q Consensus 353 e~~~Le~~ 360 (841)
+...|+.+
T Consensus 16 ~n~~Le~E 23 (34)
T 1uo4_A 16 KLYHIENE 23 (34)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 33333333
No 225
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=21.99 E-value=1e+02 Score=18.78 Aligned_cols=18 Identities=11% Similarity=0.493 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 003183 63 RSASIIQRKVRSYLSRKN 80 (841)
Q Consensus 63 ~aa~~IQ~~~R~~~~Rk~ 80 (841)
.|+..+|..++||+.|.+
T Consensus 4 qaikylqnnikgfiirqr 21 (26)
T 1m45_B 4 QAIKYLQNNIKGFIIRQR 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccceEEEeee
Confidence 344555666666655544
No 226
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=21.83 E-value=4e+02 Score=23.22 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 212 ALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKESKE 268 (841)
Q Consensus 212 ~l~~~~~~le~kv~el~~~l~~e~~--------~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~ 268 (841)
.|++.....|.++.-..++|..+.+ .+..--.++..+...++..+.+++.++.+...
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666665432 22222334556677777777777777766543
No 227
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=21.66 E-value=5.5e+02 Score=24.78 Aligned_cols=68 Identities=7% Similarity=0.115 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 297 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 297 ~~~~L~~e~~~L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
++..++.+....+..+..-.. .+..++-.....+.++..++.++..+...+...+..|+.++.+.-.+
T Consensus 85 rI~a~~a~l~dHE~RIt~~~~-------~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~ 152 (242)
T 3c9i_A 85 RIKQLRIDVDDHESRITANTK-------AITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSK 152 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBS
T ss_pred hhhhhhcccccHHHHhhhhhh-------hhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhh
Confidence 444444444444444444444 44444444444455566667778888888888888888888876544
No 228
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=21.61 E-value=2.9e+02 Score=21.57 Aligned_cols=67 Identities=6% Similarity=-0.016 Sum_probs=46.6
Q ss_pred HHhHHHHHHHHHHhccccccccHHHH---HhccCCCCCHHH---HHHHHhcCCCCCCCCCCCCHHHHHHHHhhhh
Q 003183 717 DELKHIRQAVGFLVIHQKYRISYDEI---TNDLCPILSVQQ---LYRICTLYWDDNYNTRSVSPNVISSMRILMT 785 (841)
Q Consensus 717 ~~L~~l~Qa~~lLq~~kk~~~~~~~i---~~~~C~~Ls~~Q---i~kil~~Y~~d~~e~~~v~~~~i~~v~~~~~ 785 (841)
.....+..+-+.+-..+...++..++ ...+...++..+ +..++..+.++..+ .|+-+|+..+...+.
T Consensus 11 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g--~i~~eF~~~~~~~~~ 83 (86)
T 1j7q_A 11 EEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKN--IGPEEWLTLCSKWVR 83 (86)
T ss_dssp THHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCC--BCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCC--cCCHHHHHHHHHHHh
Confidence 34566667766666554445666653 335567889999 99999999877665 465588888877665
No 229
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.54 E-value=6.1e+02 Score=26.34 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
..++..+...+.++..++.++..++.++...+.
T Consensus 118 ~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 118 NTAKATLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666677777777777666655
No 230
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.44 E-value=4.6e+02 Score=23.83 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 338 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 373 (841)
Q Consensus 338 ~~l~~~e~~~~~L~~e~~~Le~~l~~le~E~~~l~~ 373 (841)
+++..++..+..+...+..+++++..++..+..+.+
T Consensus 105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666666666655544
No 231
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.38 E-value=2.3e+02 Score=21.20 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETENQ 369 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E~~ 369 (841)
.-++..+..|+.++.+|++++..-+..+.
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455555555555555555544433333
No 232
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.19 E-value=2.2e+02 Score=29.92 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=4.2
Q ss_pred chhHHHhh
Q 003183 501 HMAYWLSN 508 (841)
Q Consensus 501 ~l~fWLsN 508 (841)
..-|||.|
T Consensus 145 ~gEfWLGl 152 (323)
T 1lwu_C 145 TTEFWLGN 152 (323)
T ss_dssp CSCEECCH
T ss_pred CccEEecc
Confidence 34556554
No 233
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.07 E-value=3.5e+02 Score=22.33 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 304 ENEKLKTLVSSLEKKIDETEKKF 326 (841)
Q Consensus 304 e~~~L~~~l~~l~~~~~e~e~~~ 326 (841)
+.+.|...+..|+.++.+++..+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 234
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.01 E-value=3.4e+02 Score=22.13 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 211 GALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKESK 267 (841)
Q Consensus 211 ~~l~~~~~~le~kv~el~~~l~~e~~--------~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~ 267 (841)
..|++.....|.++.-..++|..+.+ .+..--..+..+...++..+.+++.++.+..
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666665432 2222233455667777777777777776653
No 235
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.01 E-value=3.6e+02 Score=22.45 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 341 LEAESKIVQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 341 ~~~e~~~~~L~~e~~~Le~~l~~le~E~ 368 (841)
..++.++..|+.+++.|+.++..|..-+
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555554433
No 236
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=20.64 E-value=1.4e+02 Score=22.20 Aligned_cols=60 Identities=25% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 003183 305 NEKLKTLVSSLEKKIDETEK--KFEETSKISEERLKQALEA--ESKIVQLKTAMHRLEEKVSDM 364 (841)
Q Consensus 305 ~~~L~~~l~~l~~~~~e~e~--~~~e~~~~~~~~~~~l~~~--e~~~~~L~~e~~~Le~~l~~l 364 (841)
...|+..+..+++++..+-. +++++++.-+++.+.+.++ --.+....+++..|++++.+|
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeikkl 67 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhcC
No 237
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.47 E-value=3.7e+02 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 347 IVQLKTAMHRLEEKVSDMETENQIL 371 (841)
Q Consensus 347 ~~~L~~e~~~Le~~l~~le~E~~~l 371 (841)
+....++++++++.|.+.+..+..+
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444433
No 238
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.22 E-value=2.4e+02 Score=20.67 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003183 348 VQLKTAMHRLEEKVSDMETEN 368 (841)
Q Consensus 348 ~~L~~e~~~Le~~l~~le~E~ 368 (841)
.+|+..+...+..+.+|++||
T Consensus 17 eeler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 17 EELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhccC
Confidence 334444444444555555554
No 239
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.19 E-value=2.7e+02 Score=20.54 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183 345 SKIVQLKTAMHRLEEKVSDMETENQILR 372 (841)
Q Consensus 345 ~~~~~L~~e~~~Le~~l~~le~E~~~l~ 372 (841)
.....|-..+.+|+....+++.|+..++
T Consensus 11 e~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 11 QINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3344455556666666666666666553
No 240
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.03 E-value=3.7e+02 Score=22.07 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003183 210 TGALQAAKNKLEKQVEELTWRLQ 232 (841)
Q Consensus 210 ~~~l~~~~~~le~kv~el~~~l~ 232 (841)
+..++..+..||+.+.+++.+..
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~ 25 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFA 25 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777665555
Done!