BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003184
(841 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 142/242 (58%), Gaps = 7/242 (2%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPXXXXX 60
G+ + DIF I + +R F+L+ S MEIYNE I DLL + PL + +D
Sbjct: 103 GVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVY 162
Query: 61 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAR-EFLGKE 119
++ + ++ E R GET +N++SSRSH I R+++ES + E E
Sbjct: 163 VADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCE 222
Query: 120 NSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHIN 178
S +S +N VDLAGSERA+Q + G RLKEGC+INRSL L VI+KLS G+ G IN
Sbjct: 223 GSVKVS-HLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFIN 281
Query: 179 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMS 238
YRDSKLTR+LQ LGGNA+T IICT++P ++T L FA AK + VN V +
Sbjct: 282 YRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVST 339
Query: 239 DK 240
D+
Sbjct: 340 DE 341
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 137/246 (55%), Gaps = 4/246 (1%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXXXX 61
G+ + IF +I R + + ++++ S +EIY E IRDLLS D T L L + P
Sbjct: 130 GVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYV 189
Query: 62 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 121
+ K ++ ++++ R +G T +NE SSRSH I + IE S G EN
Sbjct: 190 KDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDG-ENH 248
Query: 122 TTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 181
+ +N VDLAGSER ++ + G RLKE IN SL L VI L G++ HI YRD
Sbjct: 249 IRV-GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRD 307
Query: 182 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKA 241
SKLTR+LQ LGGNA+T ++ + PA +VE+T TL +A AK + K +VN D A
Sbjct: 308 SKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD-A 366
Query: 242 LVKHLQ 247
L++ Q
Sbjct: 367 LLREFQ 372
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 134/259 (51%), Gaps = 27/259 (10%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTD-NTPLRLLDDPXXXX 59
+ G+ IF +I R + + ++++ S +EIY E IRDLLS + L L ++P
Sbjct: 128 LRGVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGV 187
Query: 60 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 119
+ K+ ++ ++++ R +G T +NE SSRSH I + +E S R G++
Sbjct: 188 YIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQD 247
Query: 120 NSTTLSASVNFVDLAGSERASQA---LSTGA---------------------RLKEGCHI 155
+ +N VDLAGSER ++A + GA R KE I
Sbjct: 248 HIRV--GKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKI 305
Query: 156 NRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTR 215
N SL L VI L+ R+ HI YRDSKLTR+LQ LGGNA+T ++ TL PA +++
Sbjct: 306 NLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESL 365
Query: 216 NTLLFACCAKEVTTKAQVN 234
+TL FA AK + K +VN
Sbjct: 366 STLRFANRAKNIKNKPRVN 384
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 122/233 (52%), Gaps = 6/233 (2%)
Query: 3 GITECTVADIFDYIHRHEER-AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 61
GI V DIF++I+ E F +K S EIY + IRDLL L + +D
Sbjct: 113 GIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYV 172
Query: 62 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 121
+ + E++ ++ R I T +NE SSRSH + + ++ +E L EN
Sbjct: 173 KGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVK---QENL--ENQ 227
Query: 122 TTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 181
LS + VDLAGSE+ S+ + G L E +IN+SL L VI L+ G HI YRD
Sbjct: 228 KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRD 287
Query: 182 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
SKLTR+LQ LGGNART I+ SPA + +T++TL F AK V VN
Sbjct: 288 SKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVN 340
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 127/237 (53%), Gaps = 13/237 (5%)
Query: 3 GITECTVADIFDYIHRHEER-AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 61
GI V DIF+YI+ +E F +K S EIY + IRDLL T L + +D
Sbjct: 106 GIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYV 165
Query: 62 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 121
+ + + + + ++ R + T +NE SSRSH I + ++ +EN+
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--------QENT 217
Query: 122 TT---LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 178
T LS + VDLAGSE+ S+ + GA L E +IN+SL L VI L++G ++
Sbjct: 218 QTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVP 276
Query: 179 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 235
YRDSK+TR+LQ LGGN RT I+ SP+ + +T++TLLF AK + VNV
Sbjct: 277 YRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 127/237 (53%), Gaps = 13/237 (5%)
Query: 3 GITECTVADIFDYIHRHEERA-FVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 61
GI V DIF+YI+ +E F +K S EIY + IRDLL T L + +D
Sbjct: 106 GIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYV 165
Query: 62 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 121
+ + + + + ++ R + T +NE SSRSH I + ++ +EN+
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--------QENT 217
Query: 122 TT---LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 178
T LS + VDLAGSE+ S+ + GA L E +IN+SL L VI L++G ++
Sbjct: 218 QTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVP 276
Query: 179 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 235
YRDSK+TR+LQ LGGN RT I+ SP+ + +T++TLLF AK + VNV
Sbjct: 277 YRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 135/237 (56%), Gaps = 10/237 (4%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXXXX 61
GI ++ +FD + R E + ++ S +E+YNE + DLLSTD+T +R+ DD
Sbjct: 137 GIIPRALSHLFDEL-RMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSV 195
Query: 62 XXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 119
+ + + +LL + +R+ TL+N +SSRSH + +++ RE G E
Sbjct: 196 IIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVH--IREN-GIE 252
Query: 120 NSTTLS-ASVNFVDLAGSERASQALS-TGARLKEGCHINRSLLTLSTVIRKLSKGRNGHI 177
L +N VDLAGSE S+A + G R++E +IN+SLLTL VI L R H+
Sbjct: 253 GEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHV 311
Query: 178 NYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
YR+SKLTR+LQ LGG +T+II T+SP +E+T +TL +A AK + K +VN
Sbjct: 312 PYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 8/225 (3%)
Query: 12 IFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILK 70
+FD I+ + F++ S +E+YNE IRDL+ +NT L L +D +
Sbjct: 124 LFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDGLSMHRVT 182
Query: 71 DWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSAS-VN 129
L L+ A R + T +N+ SSRSH I + IE S E + EN + +N
Sbjct: 183 TAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECS--EVI--ENKEVIRVGKLN 238
Query: 130 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQ 189
VDLAGSER S+ +TG L EG IN SL L VI KL +G HI YRDSKLTR+LQ
Sbjct: 239 LVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT-HIPYRDSKLTRLLQ 297
Query: 190 PCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
LGGN++T + +SPA ++ ++T +TL +A AK++ K ++N
Sbjct: 298 DSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRIN 342
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 124/229 (54%), Gaps = 13/229 (5%)
Query: 3 GITECTVADIFDYIHRHEERA-FVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 61
GI V DIF+YI+ +E F +K S EIY + IRDLL T L + +D
Sbjct: 106 GIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYV 165
Query: 62 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 121
+ + + + + ++ R + T +NE SSRSH I + ++ +EN+
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--------QENT 217
Query: 122 TT---LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 178
T LS + VDLAGSE+ S+ + GA L E +IN+SL L VI L++G ++
Sbjct: 218 QTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVP 276
Query: 179 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227
YRDSK+TR+LQ LGGN RT I+ SP+ + +T++TLLF AK +
Sbjct: 277 YRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 133/248 (53%), Gaps = 17/248 (6%)
Query: 3 GITECTVADIFDYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXX 59
GI D+F I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P
Sbjct: 133 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGP 192
Query: 60 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 119
+ +N +++L+ R + T +NE SSRSH + ++ + + +
Sbjct: 193 YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF--TQKRHDAET 250
Query: 120 NSTTLSAS-VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG--- 175
N TT S ++ VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G
Sbjct: 251 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 310
Query: 176 --------HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227
I YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++
Sbjct: 311 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
Query: 228 TTKAQVNV 235
VN+
Sbjct: 371 RNTVSVNL 378
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 124/247 (50%), Gaps = 6/247 (2%)
Query: 3 GITECTVADIFDYIHRHEERA-FVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 61
G+ V IF I + ++ S MEIY E IRDLL+ N L + ++
Sbjct: 110 GVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYV 169
Query: 62 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 121
+ + E++ R + T +N++SSRSH I + I E
Sbjct: 170 KGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQK-----NVETG 224
Query: 122 TTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 181
+ S + VDLAGSE+ + ++G L+E IN+SL L VI L+ G++ H+ YRD
Sbjct: 225 SAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRD 284
Query: 182 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKA 241
SKLTR+LQ LGGN+RT +I SP+ + +T +TL F AK + KA+VN +S
Sbjct: 285 SKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE 344
Query: 242 LVKHLQK 248
L + L K
Sbjct: 345 LKQMLAK 351
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 132/247 (53%), Gaps = 17/247 (6%)
Query: 3 GITECTVADIFDYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXX 59
GI D+F I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGP 176
Query: 60 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 119
+ +N +++L+ R + T +NE SSRSH + ++ + + +
Sbjct: 177 YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF--TQKRHDAET 234
Query: 120 NSTTLSAS-VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG--- 175
N TT S ++ VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 176 --------HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227
I YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Query: 228 TTKAQVN 234
VN
Sbjct: 355 RNTVSVN 361
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 9/239 (3%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPXX 57
+ GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 58 XXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 115
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 116 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 251 DGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 307
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 132/247 (53%), Gaps = 17/247 (6%)
Query: 3 GITECTVADIFDYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXX 59
GI D+F I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGP 176
Query: 60 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 119
+ +N +++L+ R + T +NE SSRSH + ++ + + +
Sbjct: 177 YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF--TQKRHDAET 234
Query: 120 NSTTLSAS-VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG--- 175
N TT S ++ VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 176 --------HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227
I YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Query: 228 TTKAQVN 234
VN
Sbjct: 355 RNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 132/247 (53%), Gaps = 17/247 (6%)
Query: 3 GITECTVADIFDYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXX 59
GI D+F I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGP 176
Query: 60 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 119
+ +N +++L+ R + T +NE SSRSH + ++ + + +
Sbjct: 177 YVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIF--TQKRHDAET 234
Query: 120 NSTTLSAS-VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG--- 175
N TT S ++ VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 176 --------HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227
I YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Query: 228 TTKAQVN 234
VN
Sbjct: 355 RNTVSVN 361
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 9/239 (3%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPXX 57
+ GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 134 LAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 192
Query: 58 XXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 115
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 193 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 252
Query: 116 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 253 DGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 309
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 310 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 368
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 9/239 (3%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPXX 57
+ GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 58 XXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 115
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 116 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 251 DGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 307
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 9/239 (3%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPXX 57
+ GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 58 XXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 115
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 116 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 251 DGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 307
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 9/239 (3%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPXX 57
+ GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 131 LAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 189
Query: 58 XXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 115
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 190 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 249
Query: 116 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 250 DGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 306
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 307 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 365
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 9/239 (3%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPXX 57
+ GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 58 XXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 115
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 116 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 251 DGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 307
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 9/239 (3%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPXX 57
+ GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 123 LAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 181
Query: 58 XXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 115
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 182 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 241
Query: 116 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 242 DGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 298
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 299 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 9/239 (3%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPXX 57
+ GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 132 LDGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 58 XXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 115
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 116 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 251 DGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 307
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 123/214 (57%), Gaps = 8/214 (3%)
Query: 19 HEERAFVLKFSAMEIYNEAIRDLLSTDNT--PLRLLDDPXXXXXXXXXXXXILKDWNHLK 76
+EE++F ++ S MEIYNE +RDLL + L++ + + + ++
Sbjct: 136 NEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIE 195
Query: 77 ELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGS 136
L+S R + T +NE+SSRSH + ++ + + + + + ++ VDLAGS
Sbjct: 196 SLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKV-GKLSLVDLAGS 254
Query: 137 ERASQALSTGARLKEGCHINRSLLTLSTVIRKLS-----KGRNGHINYRDSKLTRMLQPC 191
ERA++ + G RLKEG +IN+SL TL VI L+ K +N + YRDS LT +L+
Sbjct: 255 ERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDS 314
Query: 192 LGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 225
LGGN++TA++ T+SPA + ++T +TL +A AK
Sbjct: 315 LGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 10/248 (4%)
Query: 3 GITECTVADIFDYIHRHEER-AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD---DPXXX 58
G+T ++++F + + + +F LK +E+Y + + DLL LD D
Sbjct: 105 GLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM 164
Query: 59 XXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK 118
+ + LK ++ QR TL+NE+SSRSH I+ ++IES+
Sbjct: 165 VSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIEST-----NL 219
Query: 119 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 178
+ ++FVDLAGSER ++ S G +LKE IN+SL L VI LS G N HI
Sbjct: 220 QTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG-NQHIP 278
Query: 179 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMS 238
YR+ KLT ++ LGGNA+T + +SPA S++++T N+L +A + + NV
Sbjct: 279 YRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSK 338
Query: 239 DKALVKHL 246
+ A +K L
Sbjct: 339 EVARLKKL 346
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPXXXXX 60
GI +A+ F I ++ ++ S +E+Y E RDLL T + ++L +D
Sbjct: 115 GIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVV 174
Query: 61 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAR---EFLG 117
++ + + LL + A R G T LN SSRSH + + +E R
Sbjct: 175 LCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPR 234
Query: 118 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS--KGRNG 175
L + +FVDLAGSER + STG RLKE IN SLL L VI L + R
Sbjct: 235 PAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGS 294
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 225
HI YRDSK+TR+L+ LGGNA+T +I +SP+ S ++T NTL +A A+
Sbjct: 295 HIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 138/257 (53%), Gaps = 22/257 (8%)
Query: 3 GITECTVADIFDYIHRHEER-AFVLKFSAMEIYNEAIRDLL---STDNTPLRLLDDPXXX 58
G+T ++F+ + R +R +F LK +E+Y + + DLL S L + D
Sbjct: 113 GLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGM 172
Query: 59 XXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK 118
+ L+ +L +R + T +NE+SSRSH I+ ++IES +
Sbjct: 173 VFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIES-----IDL 227
Query: 119 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 178
+ + ++FVDLAGSER ++ S G +LKE IN+SL L VI LS G N HI
Sbjct: 228 QTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSG-NQHIP 286
Query: 179 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMS 238
YR+ KLT ++ LGGNA+T + +SPA S++++T N+LL+A ++V +++
Sbjct: 287 YRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYA---------SRVRTIVN 337
Query: 239 DKALVKHL-QKELARLE 254
D + KH+ KE+ RL+
Sbjct: 338 DPS--KHISSKEMVRLK 352
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 137/264 (51%), Gaps = 33/264 (12%)
Query: 3 GITECTVADIFDYIHRHEER----AFVLKFSAMEIYNEAIRDLLS--TDNTP---LRLLD 53
G+ T D+F I ++ ++ +K S E+YNE +RDLL+ N P L++ +
Sbjct: 162 GLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRE 221
Query: 54 DPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAR 113
P ++ + + I + R + T +N+ SSRSH + +M++
Sbjct: 222 SPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHH 281
Query: 114 EFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS--- 170
+ L +++T S+ + VDLAGSERA +TG RL+EG +IN+SL TL VI L+
Sbjct: 282 D-LETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPK 340
Query: 171 -------------KGR-----NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 212
+GR N + YRDS LT +L+ LGGN++TA+I +SP + +
Sbjct: 341 SSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP--TDYD 398
Query: 213 QTRNTLLFACCAKEVTTKAQVNVV 236
+T +TL +A AK + T+A VN V
Sbjct: 399 ETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPXX 57
+ GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 117 LAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 175
Query: 58 X--XXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 115
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 176 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 235
Query: 116 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 236 DGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 292
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTK 230
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K
Sbjct: 293 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 347
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 111/210 (52%), Gaps = 5/210 (2%)
Query: 20 EERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILKDWNHLKELL 79
EE+ S +E+YNE IRDLL ++ PL + +D K + LL
Sbjct: 149 EEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLL 207
Query: 80 SICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERA 139
R T +N SSRSH + ++ + + N A ++ +DLAGSERA
Sbjct: 208 DNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKT--ASINQNVRIAKMSLIDLAGSERA 265
Query: 140 SQALSTGARLKEGCHINRSLLTLSTVIRKL--SKGRNGHINYRDSKLTRMLQPCLGGNAR 197
S + + G R EG +INRSLL L VI L SK +N HI YR+SKLTR+L+ LGGN +
Sbjct: 266 STSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQ 325
Query: 198 TAIICTLSPARSHVEQTRNTLLFACCAKEV 227
T +I +SP+ + T NTL +A AK++
Sbjct: 326 TIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPXXXXX 60
GI +A+ F I ++ ++ S +E+Y E RDLL T + ++L +D
Sbjct: 115 GIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVV 174
Query: 61 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAR---EFLG 117
++ + + LL + A R G T LN SSRSH + + ++ R
Sbjct: 175 LCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPR 234
Query: 118 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS--KGRNG 175
L + +FVDLAGSER + STG KE IN SLL L VI L + R
Sbjct: 235 PAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGS 294
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 225
+I YRDSK+TR+L+ LGGNA+T +I +SP+ S ++T NTL +A A+
Sbjct: 295 NIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 19/240 (7%)
Query: 2 TGITECTVADIFDYI--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXX 57
G+ TV +FD I +R+ + +K + +EIYNE + DLLS + + +R+ +
Sbjct: 163 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 222
Query: 58 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 117
+ D NHL+ L+ + R T NE+SSRSH + +L E +G
Sbjct: 223 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIG 275
Query: 118 K--ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
+ E S+N VDLAGSE T R+ E +INRSL L+ VI L + +
Sbjct: 276 RHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQD 330
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 234
HI YR+SKLT +L P LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 331 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 390
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 19/240 (7%)
Query: 2 TGITECTVADIFDYI--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXX 57
G+ TV +FD I +R+ + +K + +EIYNE + DLLS + + +R+ +
Sbjct: 157 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 216
Query: 58 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 117
+ D NHL+ L+ + R T NE+SSRSH + +L E +G
Sbjct: 217 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIG 269
Query: 118 K--ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
+ E S+N VDLAGSE T R+ E +INRSL L+ VI L + +
Sbjct: 270 RHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQD 324
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 234
HI YR+SKLT +L P LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 325 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 384
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 19/240 (7%)
Query: 2 TGITECTVADIFDYI--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXX 57
G+ TV +FD I +R+ + +K + +EIYNE + DLLS + + +R+ +
Sbjct: 171 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 230
Query: 58 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 117
+ D NHL+ L+ + R T NE+SSRSH + +L E +G
Sbjct: 231 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIG 283
Query: 118 K--ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
+ E S+N VDLAGSE T R+ E +INRSL L+ VI L + +
Sbjct: 284 RHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQD 338
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 234
HI YR+SKLT +L P LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 339 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 398
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 18/226 (7%)
Query: 2 TGITECTVADIFDYI--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXX 57
G+ TV +FD I +R+ + +K + +EIYNE + DLLS + + +R+ +
Sbjct: 160 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 219
Query: 58 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 117
+ D NHL+ L+ + R T NE+SSRSH + +L E +G
Sbjct: 220 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIG 272
Query: 118 K--ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
+ E S+N VDLAGSE T R+ E +INRSL L+ VI L + +
Sbjct: 273 RHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQD 327
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 221
HI YR+SKLT +L P LGGN++T + +SP + +++ +L FA
Sbjct: 328 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 13/203 (6%)
Query: 24 FVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDDPXXXXXXXXXXXXILKDWNHLKELLS 80
+ + SA EIYNE +RDLL + +RL D ++ + + ++
Sbjct: 128 YTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFE 187
Query: 81 ICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTL--SASVNFVDLAGSER 138
R T LNE SSRSH ++ + + G + ST L + +N VDLAGSER
Sbjct: 188 FGHTNRTTEFTNLNEHSSRSHALLIVTVR-------GVDCSTGLRTTGKLNLVDLAGSER 240
Query: 139 ASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNART 198
++ + G+RL+E HIN+SL L VI L + R GH+ +R+SKLT +LQ L G+++T
Sbjct: 241 VGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPFRNSKLTYLLQDSLSGDSKT 299
Query: 199 AIICTLSPARSHVEQTRNTLLFA 221
++ +SP + +T +L FA
Sbjct: 300 LMVVQVSPVEKNTSETLYSLKFA 322
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 19/240 (7%)
Query: 2 TGITECTVADIFDYI--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXX 57
G+ TV +FD I +R+ + +K + +EIYNE + DLLS + + +R+ +
Sbjct: 160 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 219
Query: 58 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 117
+ D NHL+ L+ + R T NE+SSRSH + +L E +G
Sbjct: 220 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIG 272
Query: 118 K--ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 175
+ E S+N VDLAGSE T R+ E +I RSL L+ VI L + +
Sbjct: 273 RHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNIKRSLSELTNVILALLQ-KQD 327
Query: 176 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 234
HI YR+SKLT +L P LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 328 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 387
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 11/226 (4%)
Query: 3 GITECTVADIFDYIHRHEER--AFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDDPXX 57
G+ ++ IF+ I +E+ ++ ++ +EIYNEAI DLL+ NT + D
Sbjct: 486 GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIA 545
Query: 58 XXXXXXXXXXI-LKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL 116
I +K +L+ +R T N+ SSRSH I +I+ L
Sbjct: 546 GKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSI--FIIDLQGYNSL 603
Query: 117 GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGH 176
KE+S ++N +DLAGSER + + + G RLKE IN+SL L VI L+ H
Sbjct: 604 TKESSY---GTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSH 660
Query: 177 INYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFAC 222
+ YR+SKLT +L+ LGGN++T + +SP + +T N+L FA
Sbjct: 661 VPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFAT 706
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 119/234 (50%), Gaps = 19/234 (8%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRLL--- 52
GI T++ IF++I++ + + + K +A +EIYNE I DLL +DN T + L
Sbjct: 164 GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 223
Query: 53 --DDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIES 110
D L+ ++ +L R T NE SSRSH I + +
Sbjct: 224 RHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSG 283
Query: 111 SAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS 170
S + G + TL N VDLAGSER + + G RL+E +IN+SL L VI L
Sbjct: 284 SNAK-TGAHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALG 338
Query: 171 K--GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFAC 222
+ HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 339 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 392
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 10/231 (4%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLST------DNTPLRLLDDPX 56
GI + +F I A ++ S +EIYNE++ DLLST TP+ ++++P
Sbjct: 133 GILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ 192
Query: 57 XXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL 116
++ + LL E R I +N+ SSRSH I + +E+ +R L
Sbjct: 193 GVFIKGLSVHLTSQEEDAF-SLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT-L 250
Query: 117 GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGH 176
+E T + +N VDLAGSER ++ S G LKE +IN+SL L I L + H
Sbjct: 251 SEEKYIT--SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDH 308
Query: 177 INYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227
I +R KLT L+ LGGN ++ + + +E+T ++L FA K V
Sbjct: 309 IPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 7/230 (3%)
Query: 23 AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILKDWNHLKELLSIC 82
A + S +EIY E + DLL + L + +D + + +
Sbjct: 148 ALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPA 207
Query: 83 EAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQA 142
R +G T LN++SSRSH + L+++ RE L + +DLAGSE +
Sbjct: 208 SRNRTVGATRLNQRSSRSHAV--LLVKVDQRERLAPFRQR--EGKLYLIDLAGSEDNRRT 263
Query: 143 LSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIIC 202
+ G RLKE IN SL L V+ L++G + YRDSKLTR+LQ LGG+A + +I
Sbjct: 264 GNKGLRLKESGAINTSLFVLGKVVDALNQGLP-RVPYRDSKLTRLLQDSLGGSAHSILIA 322
Query: 203 TLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKAL--VKHLQKEL 250
++P R T + L FA +KEV + N + AL VK QKEL
Sbjct: 323 NIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQKEL 372
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 114/235 (48%), Gaps = 21/235 (8%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLL------------STDNTP 48
GI T+ IF +I + R + K S +EIYNE I DLL + D+
Sbjct: 130 GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKH 189
Query: 49 LRLLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMI 108
D +L + + ++L R T NE SSRSH I + +
Sbjct: 190 EIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHL 249
Query: 109 ESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRK 168
E E G+++ L N VDLAGSER + ++ G RL+E IN+SL L VI
Sbjct: 250 EGK-NEGTGEKSQGIL----NLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHA 304
Query: 169 LSK--GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 221
L+ G+ HI +R+SKLT +LQ L G+++T + +SPA H+ +T N+L FA
Sbjct: 305 LNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFA 359
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 118/233 (50%), Gaps = 19/233 (8%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL---- 51
GI T++ IF++I++ + + + K + +EIYNE I DLL +DN T + L
Sbjct: 107 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 166
Query: 52 -LDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIES 110
D L+ ++ +L R T NE SSRSH I + +
Sbjct: 167 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSG 226
Query: 111 SAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS 170
S + G + TL N VDLAGSER + + G RL+E +IN+SL L VI L
Sbjct: 227 SNAK-TGAHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 281
Query: 171 K--GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 221
+ HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 282 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 334
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 118/233 (50%), Gaps = 19/233 (8%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL---- 51
GI T++ IF++I++ + + + K + +EIYNE I DLL +DN T + L
Sbjct: 119 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 178
Query: 52 -LDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIES 110
D L+ ++ +L R T NE SSRSH I + +
Sbjct: 179 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSG 238
Query: 111 SAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS 170
S + G + TL N VDLAGSER + + G RL+E +IN+SL L VI L
Sbjct: 239 SNAK-TGAHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 293
Query: 171 K--GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 221
+ HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 294 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 346
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 117/233 (50%), Gaps = 19/233 (8%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL---- 51
GI T++ IF++I++ + + + K + +EIYNE I DLL +DN T + L
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 52 -LDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIES 110
D L+ ++ +L R T NE SSRSH I + +
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSG 227
Query: 111 SAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS 170
S + G + TL N VDLAGS R + + G RL+E +IN+SL L VI L
Sbjct: 228 SNAK-TGAHSYGTL----NLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALG 282
Query: 171 K--GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 221
+ HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 117/233 (50%), Gaps = 19/233 (8%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL---- 51
GI T++ IF++I++ + + + K + +EIYNE I DLL +DN T + L
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 52 -LDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIES 110
D L+ ++ +L R T NE SSRSH I + +
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSG 227
Query: 111 SAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS 170
S + G + TL N VDLAGSER + + G RL+E +I +SL L VI L
Sbjct: 228 SNAK-TGAHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALG 282
Query: 171 K--GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 221
+ HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 117/233 (50%), Gaps = 19/233 (8%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL---- 51
GI T++ IF++I++ + + + K + +EIYNE I DLL +DN T + L
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 52 -LDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIES 110
D L+ ++ +L R T NE SS SH I + +
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSG 227
Query: 111 SAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS 170
S + G + TL N VDLAGSER + + G RL+E +IN+SL L VI L
Sbjct: 228 SNAK-TGAHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 282
Query: 171 K--GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 221
+ HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 23/236 (9%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-------TPLRL 51
+ G+ + +F + + F A +EIYNE +RDLL+T +R
Sbjct: 143 LEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRR 202
Query: 52 LDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESS 111
+ + LL + R + T NE+SSRSH + +L I
Sbjct: 203 AGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQIS-- 260
Query: 112 AREFLGKENSTTL--SASVNFVDLAGSERASQALSTGA----RLKEGCHINRSLLTLSTV 165
G+ +S L A ++ VDLAGSER L+ G RL+E IN SL TL V
Sbjct: 261 -----GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLV 315
Query: 166 IRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 221
I LS + H+ YR+SKLT +LQ LGG+A+ + +SP +V ++ N+L FA
Sbjct: 316 IMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFA 370
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 112/235 (47%), Gaps = 21/235 (8%)
Query: 3 GITECTVADIFDYIHRHEERA--FVLKFSAMEIYNEAIRDLL----STDNTPLRL----- 51
G+ T++ IF + +ER + ++ +EIYNE I DLL S DN L
Sbjct: 109 GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKH 168
Query: 52 ---LDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMI 108
D + + + +L R T NE+SSRSH + M+
Sbjct: 169 DIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSV--FMV 226
Query: 109 ESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRK 168
+ R E S +N VDLAGSER + + TG RL+E +IN+SL L VI
Sbjct: 227 HINGRNLHTGETS---QGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYA 283
Query: 169 LSKGRNG--HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 221
L+ G +I +R+SKLT +LQ L G+++T + + P +H+ +T N+L FA
Sbjct: 284 LNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFA 338
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 14/200 (7%)
Query: 31 MEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGE 90
EIYN + DLL+ LR+L+D ++ + + +++ + A R G+
Sbjct: 196 FEIYNGKLFDLLN-KKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQ 254
Query: 91 TLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLK 150
T N SSRSH ++++ + R + + VDLAG+ER + S + +
Sbjct: 255 TFANSNSSRSHACFQIILRAKGR----------MHGKFSLVDLAGNERGADTSSADRQTR 304
Query: 151 -EGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC-LGGNARTAIICTLSPAR 208
EG IN+SLL L IR L + + H +R+SKLT++L+ +G N+RT +I T+SP
Sbjct: 305 MEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGI 363
Query: 209 SHVEQTRNTLLFACCAKEVT 228
S E T NTL +A KE++
Sbjct: 364 SSCEYTLNTLRYADRVKELS 383
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 18/230 (7%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDNTPLRLLDDPXXXXX 60
GI D+F + + + L+ A EIY+ + DLL+ T LR+L+D
Sbjct: 204 GIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNR-KTKLRVLEDGKQQVQ 262
Query: 61 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 120
+K + +L+ I + R G+T N SSRSH + ++++ +
Sbjct: 263 VVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------- 315
Query: 121 STTLSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLSKGRNG-HIN 178
L + +DLAG+ER + S + + EG IN+SLL L IR L GRN H
Sbjct: 316 ---LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRAL--GRNKPHTP 370
Query: 179 YRDSKLTRMLQPC-LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227
+R SKLT++L+ +G N+RT +I T+SP + E T NTL +A KE+
Sbjct: 371 FRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 14/200 (7%)
Query: 31 MEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGE 90
EIYN + DLL+ LR+L+D ++ + + +++++ A R G+
Sbjct: 216 FEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQ 274
Query: 91 TLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLK 150
T N SSRSH ++++ + R L + VDLAG+ER + S + +
Sbjct: 275 TFANSNSSRSHACFQILLRTKGR----------LHGKFSLVDLAGNERGADTSSADRQTR 324
Query: 151 -EGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC-LGGNARTAIICTLSPAR 208
EG IN+SLL L IR L + + H +R+SKLT++L+ +G N+RT +I +SP
Sbjct: 325 MEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGI 383
Query: 209 SHVEQTRNTLLFACCAKEVT 228
S E T NTL +A KE++
Sbjct: 384 SSCEYTLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 14/200 (7%)
Query: 31 MEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGE 90
EIYN + DLL+ LR+L+D ++ + + +++++ A R G+
Sbjct: 144 FEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQ 202
Query: 91 TLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLK 150
T N SSRSH ++++ + R L + VDLAG+ER + S + +
Sbjct: 203 TFANSNSSRSHACFQILLRTKGR----------LHGKFSLVDLAGNERGADTSSADRQTR 252
Query: 151 -EGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQ-PCLGGNARTAIICTLSPAR 208
EG IN+SLL L IR L + + H +R+SKLT++L+ +G N+RT +I +SP
Sbjct: 253 MEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGI 311
Query: 209 SHVEQTRNTLLFACCAKEVT 228
S E T NTL +A KE++
Sbjct: 312 SSCEYTLNTLRYADRVKELS 331
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 32/231 (13%)
Query: 3 GITECTVADIFDYIHRHEE---RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXX 59
GI + DIF +++ +++ + + F EIY + DLL L
Sbjct: 115 GIFQYAAGDIFTFLNIYDKDNTKGIFISF--YEIYCGKLYDLLQKRKMVAAL-------- 164
Query: 60 XXXXXXXXILKDWNHLKEL------LSICEAQ--RRIGETLLNEKSSRSHQIIRLMIESS 111
++KD L+ L L + + R+IG N++SSRSH I+ + ++
Sbjct: 165 -ENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDI 223
Query: 112 AREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLS 170
N T + F+DLAGSER + +S + + +G +INRSLL L IR +
Sbjct: 224 --------NKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMD 275
Query: 171 KGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 221
+N HI +RDS+LT++L+ G +++ +I +SP S EQT NTL ++
Sbjct: 276 SDKN-HIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYS 325
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 21/228 (9%)
Query: 3 GITECTVADIFDYIHRHEER---AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXX 59
GI + DIF+ + +E A + S +EIYNE DLL + TP P
Sbjct: 126 GILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS--TP----HMPMVAA 179
Query: 60 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 119
L L +L + RR+ T +N SSRSH I+ + ++S
Sbjct: 180 RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK-------- 231
Query: 120 NSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINY 179
T + +N VDLAGSE + G +EG +IN LL+++ V+ ++ G I Y
Sbjct: 232 ---THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-IPY 287
Query: 180 RDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227
RDS LT +LQ L + + +SP + + +T +TL F AK++
Sbjct: 288 RDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 3 GITECTVADIFDYIHRHEER---AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXX 59
GI + DIF+ + +E A + S +EIYNE DLL + TP P
Sbjct: 126 GILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS--TP----HMPMVAA 179
Query: 60 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 119
L L +L + RR+ T +N SSRSH I+ + ++S
Sbjct: 180 RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK-------- 231
Query: 120 NSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINY 179
T + +N VDLAGSE + G +EG +IN LL+++ V+ ++ G I Y
Sbjct: 232 ---THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-IPY 287
Query: 180 RDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 225
RDS LT +LQ L + + +SP + + +T +TL F AK
Sbjct: 288 RDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 17/114 (14%)
Query: 156 NRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTR 215
N+SL L VI L++G H+ YRDSK+TR+LQ LGGN RT I+ SP+ + +T+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 216 NTLLFACCAKEVTTKAQVNVVMS-----------------DKALVKHLQKELAR 252
+TL+F AK + VN+ ++ K++++HL+ EL R
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNR 114
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 154 HINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 213
+IN+SL L VI L++G H+ YRDSK+TR+LQ L GN RT I+ SP+ + +
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 214 TRNTLLFACCAKEVTTKAQVNV 235
T++TL+F AK + VN+
Sbjct: 63 TKSTLMFGQRAKTIKNTVSVNL 84
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 1 MTGITECTVADIFDYIHRHEERA-FVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXX 59
+ GI DIFD+I+ +E F +K S EIY + IRDLL T L + +D
Sbjct: 104 LMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVP 163
Query: 60 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 119
+ + +++ +A R + T +NE SSRSH I + I+ E
Sbjct: 164 YVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQE-----NVE 218
Query: 120 NSTTLSASVNFVDLAGSERA 139
LS + VDLAGSE+
Sbjct: 219 TEKKLSGKLYLVDLAGSEKV 238
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 255 SELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQDS 314
+ +R P P S D L+KKD+ +++ +R+ S +L ++G +D
Sbjct: 252 TSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRK--------ASETPELKGILGYTEDP 303
Query: 315 RQETGRNHNSHKQVSDIWE 333
+ NSH + D E
Sbjct: 304 IVSSDIKGNSHSSIVDGLE 322
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 125 SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGH-INYRDSK 183
S + FVDL GS+ A S GA L E H L L ++ L + G + + +
Sbjct: 9 SMDIEFVDLEGSDAHDLAYSLGASLGERLHQEVPDLDLKALVDGLKQAYQGKPLALKQER 68
Query: 184 LTRMLQPCLGGNARTAIICTLSPARSHVEQTR 215
+ ++L+ A+ T +P + ++ R
Sbjct: 69 IDQILREHDAAIAQAETAGTDAPTEAALKAER 100
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 484 NGFTYGALEQRLNNVQKTIESLVSPYPD 511
NG ALEQ NV+KT E L +PD
Sbjct: 69 NGKAKEALEQARQNVEKTAEELRKAHPD 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,597,245
Number of Sequences: 62578
Number of extensions: 812596
Number of successful extensions: 1571
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 78
length of query: 841
length of database: 14,973,337
effective HSP length: 107
effective length of query: 734
effective length of database: 8,277,491
effective search space: 6075678394
effective search space used: 6075678394
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)