Query 003184
Match_columns 841
No_of_seqs 297 out of 1749
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 18:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11995 DUF3490: Domain of un 100.0 5.9E-90 1.3E-94 663.3 13.7 161 663-823 1-161 (161)
2 KOG0245 Kinesin-like protein [ 100.0 3.2E-63 6.9E-68 575.1 23.0 259 2-262 114-382 (1221)
3 KOG0242 Kinesin-like protein [ 100.0 1.8E-62 3.8E-67 574.2 23.5 299 2-312 111-411 (675)
4 KOG4280 Kinesin-like protein [ 100.0 1.2E-62 2.6E-67 559.2 18.4 257 1-260 110-368 (574)
5 KOG0243 Kinesin-like protein [ 100.0 1.7E-60 3.6E-65 561.5 22.9 293 2-298 161-468 (1041)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 2.1E-56 4.6E-61 498.0 22.2 243 2-249 110-353 (607)
7 PLN03188 kinesin-12 family pro 100.0 9.7E-56 2.1E-60 525.5 26.0 259 2-261 200-473 (1320)
8 cd01373 KISc_KLP2_like Kinesin 100.0 2.1E-53 4.6E-58 464.9 24.0 223 2-227 107-337 (337)
9 KOG0241 Kinesin-like protein [ 100.0 1.8E-53 3.9E-58 485.7 23.4 257 2-260 118-383 (1714)
10 cd01370 KISc_KIP3_like Kinesin 100.0 1.1E-52 2.4E-57 459.4 24.0 224 2-227 112-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 3.9E-51 8.4E-56 448.4 22.9 219 2-225 113-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 6E-51 1.3E-55 448.2 24.1 232 2-234 113-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.4E-50 3E-55 444.4 24.3 230 2-235 117-351 (352)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 3.4E-50 7.3E-55 438.7 24.3 224 2-227 109-333 (333)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 6.6E-50 1.4E-54 434.0 24.3 223 2-227 98-321 (321)
16 cd01375 KISc_KIF9_like Kinesin 100.0 7.1E-50 1.5E-54 436.5 23.8 221 2-225 108-334 (334)
17 cd01372 KISc_KIF4 Kinesin moto 100.0 1.7E-49 3.7E-54 433.6 24.3 228 1-228 103-341 (341)
18 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2E-49 4.2E-54 430.8 23.4 221 2-227 104-325 (325)
19 cd01376 KISc_KID_like Kinesin 100.0 3.8E-49 8.3E-54 428.1 23.2 215 2-225 105-319 (319)
20 cd01367 KISc_KIF2_like Kinesin 100.0 3.3E-49 7.1E-54 429.3 21.3 213 2-225 109-322 (322)
21 cd01366 KISc_C_terminal Kinesi 100.0 4.2E-48 9.2E-53 420.7 24.2 223 2-230 102-329 (329)
22 PF00225 Kinesin: Kinesin moto 100.0 7.4E-48 1.6E-52 418.6 20.9 225 2-227 101-335 (335)
23 smart00129 KISc Kinesin motor, 100.0 2.8E-47 6.1E-52 414.7 24.9 230 2-234 104-335 (335)
24 KOG0244 Kinesin-like protein [ 100.0 2.1E-49 4.5E-54 461.9 6.7 253 3-261 95-350 (913)
25 cd00106 KISc Kinesin motor dom 100.0 2E-45 4.3E-50 398.5 24.1 221 2-225 103-328 (328)
26 KOG0247 Kinesin-like protein [ 100.0 2.3E-44 5.1E-49 409.8 22.8 211 21-234 223-443 (809)
27 KOG0239 Kinesin (KAR3 subfamil 100.0 2.6E-45 5.7E-50 428.8 13.9 227 1-233 417-646 (670)
28 KOG0246 Kinesin-like protein [ 100.0 1E-43 2.2E-48 395.6 18.2 222 1-232 321-546 (676)
29 COG5059 KIP1 Kinesin-like prot 100.0 6.2E-43 1.3E-47 405.2 19.6 230 1-235 113-344 (568)
30 cd01363 Motor_domain Myosin an 100.0 2.2E-31 4.7E-36 268.6 11.3 133 71-206 54-186 (186)
31 PRK10884 SH3 domain-containing 84.7 2.5 5.3E-05 44.7 6.9 75 238-312 90-166 (206)
32 PF04420 CHD5: CHD5-like prote 82.9 5.9 0.00013 40.2 8.5 67 239-309 38-104 (161)
33 COG5059 KIP1 Kinesin-like prot 78.5 0.36 7.9E-06 57.8 -2.2 81 81-170 486-566 (568)
34 PF06005 DUF904: Protein of un 67.6 38 0.00083 30.2 8.4 52 242-309 19-70 (72)
35 PF12325 TMF_TATA_bd: TATA ele 67.3 12 0.00025 36.6 5.5 34 279-312 62-95 (120)
36 PF14282 FlxA: FlxA-like prote 60.7 38 0.00082 32.1 7.6 59 239-302 17-75 (106)
37 PF03999 MAP65_ASE1: Microtubu 57.6 7.4 0.00016 47.3 2.8 47 664-710 288-336 (619)
38 PRK11637 AmiB activator; Provi 56.6 51 0.0011 38.2 9.3 27 278-304 96-122 (428)
39 KOG1962 B-cell receptor-associ 54.1 45 0.00098 35.7 7.6 63 244-312 130-192 (216)
40 PF02388 FemAB: FemAB family; 53.2 73 0.0016 36.9 9.8 46 158-206 195-240 (406)
41 COG3883 Uncharacterized protei 50.2 54 0.0012 36.2 7.5 69 241-311 38-106 (265)
42 COG3074 Uncharacterized protei 47.8 1.6E+02 0.0036 26.4 8.6 60 241-309 18-77 (79)
43 TIGR02894 DNA_bind_RsfA transc 46.4 85 0.0019 32.3 7.8 36 275-310 115-150 (161)
44 COG2433 Uncharacterized conser 44.9 45 0.00098 40.5 6.4 33 276-308 479-511 (652)
45 KOG3990 Uncharacterized conser 44.4 48 0.001 36.3 5.9 62 241-311 225-293 (305)
46 PF08826 DMPK_coil: DMPK coile 44.2 48 0.001 28.8 4.8 31 269-299 30-60 (61)
47 PRK15422 septal ring assembly 43.1 2E+02 0.0044 26.4 8.7 59 242-309 19-77 (79)
48 PRK11637 AmiB activator; Provi 38.7 1.5E+02 0.0032 34.5 9.3 29 280-308 91-119 (428)
49 PF12329 TMF_DNA_bd: TATA elem 36.0 1.9E+02 0.0041 25.8 7.5 36 273-308 35-70 (74)
50 PF07106 TBPIP: Tat binding pr 35.6 2E+02 0.0044 29.0 8.7 21 242-262 87-107 (169)
51 PRK04406 hypothetical protein; 35.6 3.1E+02 0.0068 24.7 8.8 51 243-302 6-56 (75)
52 PRK02119 hypothetical protein; 35.6 2.6E+02 0.0056 25.0 8.3 51 244-303 5-55 (73)
53 PF09726 Macoilin: Transmembra 35.4 1.2E+02 0.0027 37.8 8.4 73 241-313 418-502 (697)
54 PF08317 Spc7: Spc7 kinetochor 35.4 2E+02 0.0043 32.3 9.4 29 280-308 239-267 (325)
55 PF07795 DUF1635: Protein of u 35.3 1.3E+02 0.0029 32.2 7.5 36 270-305 25-60 (214)
56 PF14257 DUF4349: Domain of un 35.1 1.9E+02 0.0041 31.2 9.0 96 195-309 93-193 (262)
57 PRK04325 hypothetical protein; 34.8 2.5E+02 0.0054 25.2 8.1 50 245-303 6-55 (74)
58 PRK00295 hypothetical protein; 33.2 3.2E+02 0.007 24.0 8.4 31 274-304 22-52 (68)
59 PF05529 Bap31: B-cell recepto 33.0 1.3E+02 0.0028 31.0 7.0 31 276-306 159-189 (192)
60 KOG4603 TBP-1 interacting prot 32.0 86 0.0019 32.6 5.2 63 242-306 80-144 (201)
61 PF01486 K-box: K-box region; 31.1 3.8E+02 0.0082 24.8 9.1 69 240-309 18-99 (100)
62 PF04102 SlyX: SlyX; InterPro 30.8 2.4E+02 0.0052 24.7 7.2 30 275-304 22-51 (69)
63 PF12709 Kinetocho_Slk19: Cent 30.2 1.7E+02 0.0038 27.2 6.4 39 270-308 48-86 (87)
64 PRK00736 hypothetical protein; 29.4 3.8E+02 0.0083 23.6 8.2 29 275-303 23-51 (68)
65 KOG4348 Adaptor protein CMS/SE 29.3 2.3E+02 0.005 33.5 8.6 67 231-309 559-625 (627)
66 PF08614 ATG16: Autophagy prot 28.5 4.3E+02 0.0093 27.4 9.9 57 239-304 114-170 (194)
67 COG4942 Membrane-bound metallo 28.5 2.3E+02 0.005 33.4 8.6 16 243-258 40-55 (420)
68 KOG0993 Rab5 GTPase effector R 28.3 2.4E+02 0.0052 33.1 8.4 68 243-310 116-187 (542)
69 KOG4196 bZIP transcription fac 28.2 2.5E+02 0.0055 28.0 7.5 30 278-307 88-117 (135)
70 PF07106 TBPIP: Tat binding pr 27.7 52 0.0011 33.2 3.0 56 242-306 80-137 (169)
71 PRK00736 hypothetical protein; 27.1 3.6E+02 0.0077 23.8 7.6 38 275-312 16-53 (68)
72 PRK10803 tol-pal system protei 26.8 1.8E+02 0.0038 31.9 7.0 61 247-309 39-99 (263)
73 PF15186 TEX13: Testis-express 26.7 78 0.0017 32.1 3.8 44 705-753 83-126 (152)
74 KOG2129 Uncharacterized conser 26.6 2.3E+02 0.0049 33.4 7.9 22 238-259 250-271 (552)
75 PF04859 DUF641: Plant protein 25.8 1.7E+02 0.0037 29.2 6.0 63 705-767 53-117 (131)
76 PRK09039 hypothetical protein; 25.7 3E+02 0.0064 31.4 8.8 17 242-258 138-154 (343)
77 PRK13729 conjugal transfer pil 25.4 1.4E+02 0.0031 35.5 6.3 18 277-294 103-120 (475)
78 PF04977 DivIC: Septum formati 25.4 1.8E+02 0.0039 25.1 5.6 20 280-299 26-45 (80)
79 PF10458 Val_tRNA-synt_C: Valy 24.8 1.3E+02 0.0029 25.9 4.6 16 242-257 5-20 (66)
80 PRK02793 phi X174 lysis protei 24.7 4.5E+02 0.0097 23.4 7.9 50 246-304 6-55 (72)
81 PF15619 Lebercilin: Ciliary p 24.6 2.2E+02 0.0048 30.0 7.0 51 240-292 60-110 (194)
82 KOG2959 Transcriptional regula 24.4 69 0.0015 33.9 3.1 55 763-817 115-187 (238)
83 PRK00846 hypothetical protein; 23.6 5.7E+02 0.012 23.4 8.4 51 245-304 10-60 (77)
84 TIGR03185 DNA_S_dndD DNA sulfu 23.5 2.7E+02 0.0059 34.2 8.6 65 244-308 401-465 (650)
85 PF08700 Vps51: Vps51/Vps67; 23.1 4.4E+02 0.0094 23.3 7.7 60 240-304 25-84 (87)
86 PF11932 DUF3450: Protein of u 23.0 2.8E+02 0.006 29.9 7.6 25 275-299 74-98 (251)
87 TIGR03752 conj_TIGR03752 integ 22.9 3.2E+02 0.0069 32.7 8.4 28 281-308 112-139 (472)
88 COG2433 Uncharacterized conser 22.5 2.1E+02 0.0046 35.1 6.9 38 276-313 472-509 (652)
89 PF14584 DUF4446: Protein of u 22.2 2.9E+02 0.0064 28.0 7.1 43 268-310 43-85 (151)
90 PF00038 Filament: Intermediat 22.2 3.8E+02 0.0082 29.4 8.6 22 240-261 17-38 (312)
91 PF06156 DUF972: Protein of un 22.1 5E+02 0.011 24.9 8.2 35 272-306 23-57 (107)
92 PF14662 CCDC155: Coiled-coil 22.0 1.4E+02 0.003 31.6 4.8 18 242-259 37-54 (193)
93 PF08317 Spc7: Spc7 kinetochor 21.9 3.7E+02 0.0081 30.2 8.6 32 273-304 218-249 (325)
94 smart00338 BRLZ basic region l 21.8 3.5E+02 0.0075 23.0 6.5 30 276-305 31-60 (65)
95 PRK02119 hypothetical protein; 21.7 5.8E+02 0.013 22.8 8.7 42 271-312 16-57 (73)
96 PF15254 CCDC14: Coiled-coil d 21.5 1.8E+02 0.0038 36.6 6.2 31 282-312 438-468 (861)
97 COG3879 Uncharacterized protei 21.5 5E+02 0.011 28.6 9.0 43 213-257 24-66 (247)
98 PRK00295 hypothetical protein; 21.4 5.1E+02 0.011 22.8 7.5 37 275-311 16-52 (68)
99 PF05769 DUF837: Protein of un 21.3 4.1E+02 0.009 27.7 8.1 60 242-309 42-101 (181)
100 PF10205 KLRAQ: Predicted coil 21.3 3.1E+02 0.0067 26.3 6.5 43 268-310 30-72 (102)
101 KOG4673 Transcription factor T 21.2 3.9E+02 0.0084 33.5 8.7 62 242-312 867-931 (961)
102 PF10392 COG5: Golgi transport 21.1 6.3E+02 0.014 24.7 9.0 45 215-260 8-52 (132)
103 PF08657 DASH_Spc34: DASH comp 21.1 1.8E+02 0.0039 32.0 5.7 57 241-297 194-258 (259)
104 PLN03230 acetyl-coenzyme A car 21.0 2.6E+02 0.0057 33.0 7.2 40 216-256 56-95 (431)
105 PF09789 DUF2353: Uncharacteri 20.8 4.9E+02 0.011 29.7 9.1 74 239-312 28-113 (319)
106 PF15188 CCDC-167: Coiled-coil 20.6 4E+02 0.0086 24.8 6.9 54 240-306 11-64 (85)
107 KOG0250 DNA repair protein RAD 20.6 3.2E+02 0.0068 35.8 8.3 17 241-257 372-388 (1074)
108 PF04111 APG6: Autophagy prote 20.5 2E+02 0.0042 32.5 6.0 8 615-622 245-252 (314)
109 PF00038 Filament: Intermediat 20.5 3.4E+02 0.0073 29.8 7.8 31 276-306 260-290 (312)
110 PF12325 TMF_TATA_bd: TATA ele 20.4 7.6E+02 0.016 24.2 9.2 17 277-293 67-83 (120)
111 PF14389 Lzipper-MIP1: Leucine 20.2 4.9E+02 0.011 24.0 7.5 31 270-300 53-83 (88)
112 PF05377 FlaC_arch: Flagella a 20.1 4.5E+02 0.0097 22.7 6.5 33 275-307 11-43 (55)
No 1
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=100.00 E-value=5.9e-90 Score=663.34 Aligned_cols=161 Identities=66% Similarity=1.107 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhhhccccceecceeeeeecCCCCCceeeeeehhhhhhHHHHhhcCCccccCCccccHHHHHHHHHHHH
Q 003184 663 EFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRER 742 (841)
Q Consensus 663 ~F~~~~~~IieLW~~C~vslvHRtyFfLLfkGd~~D~iYmeVElRRLs~lk~~~~~~~~~~~~~~~~~~~ss~k~l~~er 742 (841)
+||+||++||||||+|||||||||||||||||||+|+||||||||||+|||+||+++++|++|++++|++||+|||+|||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER 80 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRER 80 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhCCCCCcccchhhhhhhccCCcccchhHHHHHHHHHHHhhhccccccccccccccccC
Q 003184 743 ETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTP 822 (841)
Q Consensus 743 ~~l~k~~~~rl~~~ere~ly~kwgi~l~~k~rrlql~~~lwt~~~d~~hv~esa~~vaklv~~~e~~~~~kemf~l~f~~ 822 (841)
+||||||++|||.+|||+||.||||||+||||||||||+|||||+||+||+|||+||||||||||||+|+||||||||+|
T Consensus 81 ~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFgLnF~~ 160 (161)
T PF11995_consen 81 EMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFGLNFTP 160 (161)
T ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 003184 823 L 823 (841)
Q Consensus 823 ~ 823 (841)
|
T Consensus 161 ~ 161 (161)
T PF11995_consen 161 P 161 (161)
T ss_pred C
Confidence 6
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-63 Score=575.07 Aligned_cols=259 Identities=36% Similarity=0.535 Sum_probs=240.9
Q ss_pred CCcHHHHHHHHHHHHHhcC--CCeEEEEEEEEEEEcCceeecCC-CCC-CCceeeeCCCCCeEecccEEEEecCHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLS-TDN-TPLRLLDDPEKGVVVEKVTEEILKDWNHLKE 77 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~--e~efsV~vSylEIYNE~V~DLLs-~~~-~~L~I~ed~~~gv~V~gLtev~V~S~eel~~ 77 (841)
+|||||+++|||.+|...+ +..|.|.|||+|||||.|+|||+ |.+ .+|+|+|+|-.|+||++|+.+.|.|+.|+.+
T Consensus 114 ~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~ 193 (1221)
T KOG0245|consen 114 PGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQD 193 (1221)
T ss_pred CCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHH
Confidence 7999999999999999755 67999999999999999999999 544 5899999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhccccc
Q 003184 78 LLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINR 157 (841)
Q Consensus 78 LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INk 157 (841)
++..|++.|++++|+||++|||||+||+|++.+...... .+-....+|+|++||||||||++.+++.|+|+|||.+||+
T Consensus 194 ~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~-~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INK 272 (1221)
T KOG0245|consen 194 LMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQD-TGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINK 272 (1221)
T ss_pred HHHhcchhhhhhhhccccccccceeEEEEEEEeeecccc-CCCcceeeeeeeEEeccCcccccccCCCccchhcccccch
Confidence 999999999999999999999999999999998765432 2234678999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhcC------CCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccce
Q 003184 158 SLLTLSTVIRKLSKG------RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKA 231 (841)
Q Consensus 158 SLlaLg~VI~aLs~g------k~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p 231 (841)
||+|||.||.||+.. +..+||||||.||+||+++||||++|+|||+|||++.||+|||+||+||.|||+|+|++
T Consensus 273 SLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~a 352 (1221)
T KOG0245|consen 273 SLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNA 352 (1221)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccc
Confidence 999999999999842 34589999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCHHHHHHHHHHHHHHHHHHhcCCCC
Q 003184 232 QVNVVMSDKALVKHLQKELARLESELRSPAP 262 (841)
Q Consensus 232 ~vN~~~s~~alik~Lq~EiarLe~eL~~~~~ 262 (841)
+||+.+..+ +|+.|++||++|+..|+..+.
T Consensus 353 vVNEdpnaK-LIRELreEv~rLksll~~~~~ 382 (1221)
T KOG0245|consen 353 VVNEDPNAK-LIRELREEVARLKSLLRAQGL 382 (1221)
T ss_pred eeCCCccHH-HHHHHHHHHHHHHHHHhcccc
Confidence 999998877 899999999999999987554
No 3
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-62 Score=574.23 Aligned_cols=299 Identities=54% Similarity=0.735 Sum_probs=275.6
Q ss_pred CCcHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSI 81 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~~ 81 (841)
|||||+|++|||++|.++.++.|.|+|||+|||||.|+|||++++.+|+|++|+.+|++|.||++++|.|+++++++|..
T Consensus 111 PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~ 190 (675)
T KOG0242|consen 111 PGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQK 190 (675)
T ss_pred CCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchHH
Q 003184 82 CEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLT 161 (841)
Q Consensus 82 G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLla 161 (841)
|+++|+++.|.+|..|||||+||+|+|++..+... . ..++|+|||||||||+.++++.|.|++||++||+||++
T Consensus 191 g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-----~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLla 264 (675)
T KOG0242|consen 191 GNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-----S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLA 264 (675)
T ss_pred hhccCcccccccccccchhhheeeEEEEecccccc-----c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHH
Confidence 99999999999999999999999999999765432 1 77889999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeeccccCHH
Q 003184 162 LSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDK 240 (841)
Q Consensus 162 Lg~VI~aLs~g-k~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN~~~s~~ 240 (841)
||+||++|+++ ..+||||||||||||||++|||||+|+|||||+|+..|++||.+||.||+|||.|++++.+|++..++
T Consensus 265 LgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~ 344 (675)
T KOG0242|consen 265 LGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDK 344 (675)
T ss_pred HHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchh
Confidence 99999999998 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003184 241 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKME-REIRELTKQRDLAQSRVEDLLRMVGCDQ 312 (841)
Q Consensus 241 alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle-~ei~eL~~qrd~~q~r~e~l~~~~~~~~ 312 (841)
.+++.+++++..|+.++....+..... ...+..+.+++ ++..++..+++.++...+.+........
T Consensus 345 ~~~~~~~~~i~~l~~e~~~~~~~~~~~------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (675)
T KOG0242|consen 345 ALLKYLQREIAELEAELERLKKKLEPE------REQELLIQKLEKEEVEELLPQRSEIQSLVELLKRLSASRR 411 (675)
T ss_pred hhhHHHHHHHHHHHHHHHhhccccccc------hhhHHHHhHhhhhhHhhhhhhhhHHHHHHHHHhhhccccc
Confidence 999999999999999998765542211 25667777888 7888888888888888887766665544
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-62 Score=559.23 Aligned_cols=257 Identities=43% Similarity=0.604 Sum_probs=241.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCC-CeEEEEEEEEEEEcCceeecCCCCC-CCceeeeCCCCCeEecccEEEEecCHHHHHHH
Q 003184 1 MTGITECTVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTDN-TPLRLLDDPEKGVVVEKVTEEILKDWNHLKEL 78 (841)
Q Consensus 1 m~GIIprav~dLF~~Ie~~~e-~efsV~vSylEIYNE~V~DLLs~~~-~~L~I~ed~~~gv~V~gLtev~V~S~eel~~L 78 (841)
.+|||||++.+||.+|++.++ ..|.|+|||+|||||.|+|||++.+ ..+.|+++|..|+||+||+++.|.++++++.+
T Consensus 110 ~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~ 189 (574)
T KOG4280|consen 110 LRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQL 189 (574)
T ss_pred hCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHH
Confidence 479999999999999998774 4699999999999999999999988 58999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccc
Q 003184 79 LSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRS 158 (841)
Q Consensus 79 L~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkS 158 (841)
|..|.++|.+++|.||..|||||+||+|+|++... ...+......++|+|||||||||..++++.|.+++|+.+||+|
T Consensus 190 l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~--~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~S 267 (574)
T KOG4280|consen 190 LVVGLANRRVGATSMNEESSRSHAIFTIHIESSEK--SDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLS 267 (574)
T ss_pred HHHHHhhcchhhccCCcccccceEEEEEEEEeecc--cCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchh
Confidence 99999999999999999999999999999998322 2334556789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeeccccC
Q 003184 159 LLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMS 238 (841)
Q Consensus 159 LlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN~~~s 238 (841)
|.+||+||.+|+++++.||||||||||+||||||||||+|+|||||+|+..+++||++||+||+|||.|+|+|.+|.++.
T Consensus 268 Ls~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~ 347 (574)
T KOG4280|consen 268 LSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK 347 (574)
T ss_pred HHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 003184 239 DKALVKHLQKELARLESELRSP 260 (841)
Q Consensus 239 ~~alik~Lq~EiarLe~eL~~~ 260 (841)
.+.++.||+||++|+.+|...
T Consensus 348 -~~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 348 -DALLRELQEEIERLKKELDPG 368 (574)
T ss_pred -hhhHHHHHHHHHHHHHhhccc
Confidence 468999999999999999764
No 5
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-60 Score=561.54 Aligned_cols=293 Identities=37% Similarity=0.552 Sum_probs=253.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEcCceeecCCCCCC---CceeeeCC-----CCCeEecccEEEEecCHH
Q 003184 2 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNT---PLRLLDDP-----EKGVVVEKVTEEILKDWN 73 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~e~efsV~vSylEIYNE~V~DLLs~~~~---~L~I~ed~-----~~gv~V~gLtev~V~S~e 73 (841)
+||||||+.+||+.++... .+|+|+|||+|+|||.++|||++... .+++.+++ .+|++|+||.|+.|.++.
T Consensus 161 aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ 239 (1041)
T KOG0243|consen 161 AGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNAD 239 (1041)
T ss_pred CCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchh
Confidence 6999999999999999754 89999999999999999999988543 56666665 678999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhc
Q 003184 74 HLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGC 153 (841)
Q Consensus 74 el~~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~ 153 (841)
|++.+|..|.+.|++++|.||..|||||+||+|+|..... ...+......|+|++|||||||..+++|+.+.|.+|++
T Consensus 240 ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~--t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG 317 (1041)
T KOG0243|consen 240 EIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKEN--TPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAG 317 (1041)
T ss_pred HHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecC--CCcchhhHhhcccceeeccccccccccccccchhHHhh
Confidence 9999999999999999999999999999999999966433 23455667899999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceee
Q 003184 154 HINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQV 233 (841)
Q Consensus 154 ~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~v 233 (841)
.||+||+|||+||+||.. +.+|||||+|||||||||||||..+|+|||||||+..+++||++||.||.|||.|+|+|.+
T Consensus 318 ~INqSLLTLGRVInALVe-~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPev 396 (1041)
T KOG0243|consen 318 EINQSLLTLGRVINALVE-HSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEV 396 (1041)
T ss_pred hhhHHHHHHHHHHHHHHc-cCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCcc
Confidence 999999999999999997 4569999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHhcCCCCCC----CcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 234 NVVMSDKALVKHLQKELARLESELRSPAPAS----STCDYV---ALLRKKDLQIQKMEREIRELTKQRDLAQ 298 (841)
Q Consensus 234 N~~~s~~alik~Lq~EiarLe~eL~~~~~~~----s~~~~~---~~l~ekd~qi~kle~ei~eL~~qrd~~q 298 (841)
|+-+..+.+++.|-.||.+|+.+|...+..- +...|. ....++..+|++++.++..+.+++..++
T Consensus 397 NQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~ 468 (1041)
T KOG0243|consen 397 NQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLT 468 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997654321 111221 1233455566666666655555444433
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.1e-56 Score=498.02 Aligned_cols=243 Identities=38% Similarity=0.539 Sum_probs=230.6
Q ss_pred CCcHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLS 80 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~-e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~ 80 (841)
.|||||++++||++|...+ ..+|.|+|||+|||+|+|+|||++.+.+|.|++|...+++|+|+++..|.++++++++|+
T Consensus 110 ~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~ 189 (607)
T KOG0240|consen 110 MGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVID 189 (607)
T ss_pred cCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHh
Confidence 5999999999999999876 469999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchH
Q 003184 81 ICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLL 160 (841)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLl 160 (841)
.|..+|+++.|.||.+|||||.||+|+|.+... .......|+|++|||||||+++++++.|.-+.|+.+||+||.
T Consensus 190 ~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~-----e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLs 264 (607)
T KOG0240|consen 190 EGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENV-----EDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLS 264 (607)
T ss_pred cccccchhhhccccccccccceEEEEEEEeccc-----cchhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHH
Confidence 999999999999999999999999999998643 344578999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeeccccCHH
Q 003184 161 TLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDK 240 (841)
Q Consensus 161 aLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN~~~s~~ 240 (841)
|||+||++|+.|...|||||||||||||||+|||||||.||+|++|+..+-.||.+||+|+.|||.|+|.+.+|...+.+
T Consensus 265 aLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e 344 (607)
T KOG0240|consen 265 ALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAE 344 (607)
T ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHH
Q 003184 241 ALVKHLQKE 249 (841)
Q Consensus 241 alik~Lq~E 249 (841)
+..+.|..+
T Consensus 345 ~~~r~~e~~ 353 (607)
T KOG0240|consen 345 EWKRKLEKK 353 (607)
T ss_pred HHHHHHHHH
Confidence 776666554
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=9.7e-56 Score=525.50 Aligned_cols=259 Identities=39% Similarity=0.590 Sum_probs=235.1
Q ss_pred CCcHHHHHHHHHHHHHhc------CCCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHH
Q 003184 2 TGITECTVADIFDYIHRH------EERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHL 75 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~------~e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel 75 (841)
+|||||++++||+.|... ....|.|+|||+|||||.|+|||++....+.|++|+.+|++|.||+++.|.+++++
T Consensus 200 ~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~ 279 (1320)
T PLN03188 200 QGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDV 279 (1320)
T ss_pred CCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHH
Confidence 699999999999999752 24589999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhccc
Q 003184 76 KELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHI 155 (841)
Q Consensus 76 ~~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~I 155 (841)
+.+|..|..+|++++|.+|..|||||+||+|+|++...... .+......|+|+|||||||||...+++.|.+++|+++|
T Consensus 280 l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~-dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~I 358 (1320)
T PLN03188 280 TQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVA-DGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNI 358 (1320)
T ss_pred HHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccC-CCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHH
Confidence 99999999999999999999999999999999987543321 22334578999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhhc----CCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccce
Q 003184 156 NRSLLTLSTVIRKLSK----GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKA 231 (841)
Q Consensus 156 NkSLlaLg~VI~aLs~----gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p 231 (841)
|+||++||+||.+|+. ++..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||.|+|+|
T Consensus 359 NKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkp 438 (1320)
T PLN03188 359 NRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKA 438 (1320)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccc
Confidence 9999999999999975 345699999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCH-----HHHHHHHHHHHHHHHHHhcCCC
Q 003184 232 QVNVVMSD-----KALVKHLQKELARLESELRSPA 261 (841)
Q Consensus 232 ~vN~~~s~-----~alik~Lq~EiarLe~eL~~~~ 261 (841)
++|....+ ..+|++|+.|+.+|+.....+.
T Consensus 439 vvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~ 473 (1320)
T PLN03188 439 VVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPT 473 (1320)
T ss_pred eeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99987543 3578889999999998865543
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=2.1e-53 Score=464.85 Aligned_cols=223 Identities=39% Similarity=0.573 Sum_probs=207.3
Q ss_pred CCcHHHHHHHHHHHHHhc-----CCCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHH
Q 003184 2 TGITECTVADIFDYIHRH-----EERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLK 76 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~-----~e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~ 76 (841)
+|||||++++||..|... .+..|.|++||+|||||+|+|||++....+.+++++.++++|+|++++.|.|++|++
T Consensus 107 ~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~ 186 (337)
T cd01373 107 QGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVY 186 (337)
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHH
Confidence 699999999999999754 356899999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccc
Q 003184 77 ELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHIN 156 (841)
Q Consensus 77 ~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~IN 156 (841)
++|..|.++|++++|.+|..|||||+||+|+|.+.... ........|+|+|||||||||..++++.|.+++|+.+||
T Consensus 187 ~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~---~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN 263 (337)
T cd01373 187 QVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKK---ASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNIN 263 (337)
T ss_pred HHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecC---CCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhcccc
Confidence 99999999999999999999999999999999875432 122245789999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhc---CCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 003184 157 RSLLTLSTVIRKLSK---GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227 (841)
Q Consensus 157 kSLlaLg~VI~aLs~---gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I 227 (841)
+||++|++||.+|++ ++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||.|||+|
T Consensus 264 ~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 264 KSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999975 34679999999999999999999999999999999999999999999999999987
No 9
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-53 Score=485.70 Aligned_cols=257 Identities=35% Similarity=0.543 Sum_probs=238.4
Q ss_pred CCcHHHHHHHHHHHHHhc--CCCeEEEEEEEEEEEcCceeecCCCCC--CCceeeeCCCCCeEecccEEEEecCHHHHHH
Q 003184 2 TGITECTVADIFDYIHRH--EERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKE 77 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~--~e~efsV~vSylEIYNE~V~DLLs~~~--~~L~I~ed~~~gv~V~gLtev~V~S~eel~~ 77 (841)
||||||.+..||..|.+. ++..|.|.|||+|||||+|||||.|.. ..|+++++.-.|.||.||++..|.|++|+-.
T Consensus 118 pGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~ 197 (1714)
T KOG0241|consen 118 PGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDS 197 (1714)
T ss_pred CCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHH
Confidence 799999999999999864 467999999999999999999999865 4799999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhccccc
Q 003184 78 LLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINR 157 (841)
Q Consensus 78 LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INk 157 (841)
++..|+++|++++|+||..|||||+||.|.|.+.-.+. ..+.+....++|.+||||||||++++++.|.|++||++||+
T Consensus 198 lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~-ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNink 276 (1714)
T KOG0241|consen 198 LMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDL-KTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINK 276 (1714)
T ss_pred HHHhccccceeeeecccccccccceeEEEEEeeEEecc-ccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcch
Confidence 99999999999999999999999999999998865443 22344567899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhcC-----CCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhccccccee
Q 003184 158 SLLTLSTVIRKLSKG-----RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 232 (841)
Q Consensus 158 SLlaLg~VI~aLs~g-----k~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~ 232 (841)
||.+||.||.+|++. +..+||||||.||+||||+|||||+|+||+||||+..+|+||++||+||.|||+|+|++.
T Consensus 277 SLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~av 356 (1714)
T KOG0241|consen 277 SLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAV 356 (1714)
T ss_pred hhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999853 455899999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCHHHHHHHHHHHHHHHHHHhcCC
Q 003184 233 VNVVMSDKALVKHLQKELARLESELRSP 260 (841)
Q Consensus 233 vN~~~s~~alik~Lq~EiarLe~eL~~~ 260 (841)
+|...... .++.|+.|+..|+.+|.+.
T Consensus 357 vNedpnar-virElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 357 VNEDPNAR-VIRELREEVEKLREQLEQA 383 (1714)
T ss_pred ccCCchHH-HHHHHHHHHHHHHHHHhhh
Confidence 99987665 7899999999999999873
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.1e-52 Score=459.37 Aligned_cols=224 Identities=44% Similarity=0.660 Sum_probs=210.9
Q ss_pred CCcHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLS 80 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~-e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~ 80 (841)
+|||||++++||+.++..+ +..|.|+|||+|||||+|+|||++...++.+++|+.++++|.|++++.|.+++|++.+|.
T Consensus 112 ~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~ 191 (338)
T cd01370 112 PGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLM 191 (338)
T ss_pred CchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHH
Confidence 6999999999999999876 789999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchH
Q 003184 81 ICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLL 160 (841)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLl 160 (841)
.|.++|++++|.+|..|||||+||+|+|.+..... ........|+|+|||||||||..+++..|.+++|+++||+||+
T Consensus 192 ~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~--~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~ 269 (338)
T cd01370 192 KGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTA--SINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLL 269 (338)
T ss_pred HHHhhcccccccccCccCcceEEEEEEEEEEecCC--CCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHH
Confidence 99999999999999999999999999998864421 1234568899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCC--CCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 003184 161 TLSTVIRKLSKGR--NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227 (841)
Q Consensus 161 aLg~VI~aLs~gk--~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I 227 (841)
+|++||.+|+.++ ..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 270 ~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 270 ALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999875 379999999999999999999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.9e-51 Score=448.43 Aligned_cols=219 Identities=33% Similarity=0.494 Sum_probs=202.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEcCceeecCCCCCC------CceeeeCCCCCeEecccEEEEecCHHHH
Q 003184 2 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNT------PLRLLDDPEKGVVVEKVTEEILKDWNHL 75 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~e~efsV~vSylEIYNE~V~DLLs~~~~------~L~I~ed~~~gv~V~gLtev~V~S~eel 75 (841)
+|||||++++||+.+.. |.|+|||+|||||+|+|||++... ++.+++|+.++++|+|++++.|.|++|+
T Consensus 113 ~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~ 187 (345)
T cd01368 113 GGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEA 187 (345)
T ss_pred CchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHH
Confidence 79999999999999976 999999999999999999987543 6999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCC---CCcceeEeeeeEeecCCCcccccccchhhhhhhh
Q 003184 76 KELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK---ENSTTLSASVNFVDLAGSERASQALSTGARLKEG 152 (841)
Q Consensus 76 ~~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~---~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg 152 (841)
+.+|..|.++|++++|.+|..|||||+||+|+|.+......+. .......++|+|||||||||..++++.|.+++|+
T Consensus 188 ~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~ 267 (345)
T cd01368 188 REVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEA 267 (345)
T ss_pred HHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhh
Confidence 9999999999999999999999999999999998765432111 2345678999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHhhcC-----CCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhc
Q 003184 153 CHINRSLLTLSTVIRKLSKG-----RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 225 (841)
Q Consensus 153 ~~INkSLlaLg~VI~aLs~g-----k~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK 225 (841)
.+||+||++|++||.+|+++ +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 268 ~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 268 GNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred hhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999863 45799999999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=6e-51 Score=448.22 Aligned_cols=232 Identities=37% Similarity=0.547 Sum_probs=215.1
Q ss_pred CCcHHHHHHHHHHHHHhcC--CCeEEEEEEEEEEEcCceeecCCCCC---CCceeeeCCCCCeEecccEEEEecCHHHHH
Q 003184 2 TGITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDN---TPLRLLDDPEKGVVVEKVTEEILKDWNHLK 76 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~--e~efsV~vSylEIYNE~V~DLLs~~~---~~L~I~ed~~~gv~V~gLtev~V~S~eel~ 76 (841)
+|||||++++||+.+.... ...|.|+|||+|||||+|+|||++.. ..+.+++++.+|++|+|++++.|.|+++++
T Consensus 113 ~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~ 192 (356)
T cd01365 113 KGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQ 192 (356)
T ss_pred CchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHH
Confidence 7999999999999998765 47899999999999999999999874 589999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccc
Q 003184 77 ELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHIN 156 (841)
Q Consensus 77 ~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~IN 156 (841)
.+|..|.++|++++|.+|..|||||+||+|+|.+...... ........++|+||||||||+..+++..|.+++|+.+||
T Consensus 193 ~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~-~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN 271 (356)
T cd01365 193 NLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE-TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNIN 271 (356)
T ss_pred HHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC-CCCCceEEEEEEeeecccccccccccccchhhHHHHHHh
Confidence 9999999999999999999999999999999987643321 134456899999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhcC-------CCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhccccc
Q 003184 157 RSLLTLSTVIRKLSKG-------RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 229 (841)
Q Consensus 157 kSLlaLg~VI~aLs~g-------k~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n 229 (841)
+||++|++||.+|+.+ +..||||||||||+||+++||||++|+||+||+|...+++||++||+||++|++|++
T Consensus 272 ~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~ 351 (356)
T cd01365 272 KSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVN 351 (356)
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccC
Confidence 9999999999999864 357999999999999999999999999999999999999999999999999999999
Q ss_pred ceeec
Q 003184 230 KAQVN 234 (841)
Q Consensus 230 ~p~vN 234 (841)
.|++|
T Consensus 352 ~~~~~ 356 (356)
T cd01365 352 VAVVN 356 (356)
T ss_pred ccccC
Confidence 99876
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.4e-50 Score=444.37 Aligned_cols=230 Identities=39% Similarity=0.573 Sum_probs=214.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEcCceeecCCCC---CCCceeeeC--CCCCeEecccEEEEecCHHHHH
Q 003184 2 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDD--PEKGVVVEKVTEEILKDWNHLK 76 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~e~efsV~vSylEIYNE~V~DLLs~~---~~~L~I~ed--~~~gv~V~gLtev~V~S~eel~ 76 (841)
+|||||++.+||+.+... +..|.|+|||+|||||.|+|||++. ..+++++++ ..+|++|.|++++.|.+++|++
T Consensus 117 ~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~ 195 (352)
T cd01364 117 AGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGL 195 (352)
T ss_pred CCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHH
Confidence 699999999999999875 6789999999999999999999986 468999999 5899999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccc
Q 003184 77 ELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHIN 156 (841)
Q Consensus 77 ~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~IN 156 (841)
.+|..|.++|++++|.+|..|||||+||+|+|.+.... ..+......|+|+||||||||+..+.++.+.+++|+..||
T Consensus 196 ~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~--~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN 273 (352)
T cd01364 196 KLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETT--ISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNIN 273 (352)
T ss_pred HHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccC--CCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhh
Confidence 99999999999999999999999999999999875432 1223445689999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeecc
Q 003184 157 RSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 235 (841)
Q Consensus 157 kSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN~ 235 (841)
+||++|++||.+|+.+. .|||||+||||+||+++|||||+|+||+||+|+..+++||++||+||++|++|+|+|.+|.
T Consensus 274 ~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 274 QSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999998754 5999999999999999999999999999999999999999999999999999999999985
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.4e-50 Score=438.68 Aligned_cols=224 Identities=41% Similarity=0.624 Sum_probs=211.1
Q ss_pred CCcHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEcCceeecCCCCC-CCceeeeCCCCCeEecccEEEEecCHHHHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN-TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLS 80 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~e~efsV~vSylEIYNE~V~DLLs~~~-~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~ 80 (841)
+|||||++++||+.++..++..|.|+|||+|||||.|+|||++.. .++.+++++.++++|.|++++.|.+++++..+|.
T Consensus 109 ~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~ 188 (333)
T cd01371 109 RGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMT 188 (333)
T ss_pred cchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHH
Confidence 799999999999999988889999999999999999999999876 5899999999999999999999999999999999
Q ss_pred HHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchH
Q 003184 81 ICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLL 160 (841)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLl 160 (841)
.|.++|+++.|.+|..|||||+||+|+|++..... .+......|+|+||||||||+..++++.|.+++|+..||+||.
T Consensus 189 ~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~ 266 (333)
T cd01371 189 LGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE--DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLS 266 (333)
T ss_pred HHHhhCccccccccCCCCCCcEEEEEEEEEEeccC--CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHH
Confidence 99999999999999999999999999998764421 2234567899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 003184 161 TLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227 (841)
Q Consensus 161 aLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I 227 (841)
+|++||.+|+.++..|||||+||||+||+++|||||+|+||+||+|...+++||++||+||++||+|
T Consensus 267 ~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 267 ALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999887779999999999999999999999999999999999999999999999999987
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6.6e-50 Score=434.01 Aligned_cols=223 Identities=57% Similarity=0.812 Sum_probs=210.3
Q ss_pred CCcHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSI 81 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~~ 81 (841)
+|||||++++||+.+...++..|.|+|||+|||||.|+|||++...++++++++.++++|.|++++.|.|++++..+|..
T Consensus 98 ~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~ 177 (321)
T cd01374 98 PGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIAR 177 (321)
T ss_pred CchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHH
Confidence 69999999999999998888999999999999999999999999899999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchHH
Q 003184 82 CEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLT 161 (841)
Q Consensus 82 G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLla 161 (841)
|.++|+++.|.+|..|||||+||+|+|.+..... ........|+|+||||||||+..+.+ .+.+++|+.+||+||.+
T Consensus 178 ~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~ 254 (321)
T cd01374 178 GEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--SESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLT 254 (321)
T ss_pred HHhccccccCcCCCccccccEEEEEEEEEEecCC--CCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHH
Confidence 9999999999999999999999999998864321 12345678999999999999999888 89999999999999999
Q ss_pred HHHHHHHhhcCC-CCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 003184 162 LSTVIRKLSKGR-NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227 (841)
Q Consensus 162 Lg~VI~aLs~gk-~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I 227 (841)
|++||.+|+.++ ..||||||||||+||+++|||||+|+|||||+|...+++||++||+||++|++|
T Consensus 255 L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 255 LGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999875 579999999999999999999999999999999999999999999999999986
No 16
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=7.1e-50 Score=436.48 Aligned_cols=221 Identities=34% Similarity=0.493 Sum_probs=208.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEcCceeecCCCCC------CCceeeeCCCCCeEecccEEEEecCHHHH
Q 003184 2 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN------TPLRLLDDPEKGVVVEKVTEEILKDWNHL 75 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~e~efsV~vSylEIYNE~V~DLLs~~~------~~L~I~ed~~~gv~V~gLtev~V~S~eel 75 (841)
+|||||++++||++|+..++..|.|+|||+|||||.|+|||++.. ..+.+++++.++++|+|++++.|.+++|+
T Consensus 108 ~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~ 187 (334)
T cd01375 108 RGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEA 187 (334)
T ss_pred CchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHH
Confidence 699999999999999998889999999999999999999999874 57999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhccc
Q 003184 76 KELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHI 155 (841)
Q Consensus 76 ~~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~I 155 (841)
+.+|..|.++|++++|.+|..|||||+||+|+|.+.... ........++|+||||||||+..++++.+..++|+.+|
T Consensus 188 ~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~---~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~i 264 (334)
T cd01375 188 LNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSRE---AGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYI 264 (334)
T ss_pred HHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecC---CCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhh
Confidence 999999999999999999999999999999999986443 23345678999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhc
Q 003184 156 NRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 225 (841)
Q Consensus 156 NkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK 225 (841)
|+||++|++||.+|+.++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|++
T Consensus 265 N~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 265 NKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999998776799999999999999999999999999999999999999999999999985
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.7e-49 Score=433.58 Aligned_cols=228 Identities=39% Similarity=0.601 Sum_probs=211.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCC-CeEEEEEEEEEEEcCceeecCCCC---CCCceeeeCCCCCeEecccEEEEecCHHHHH
Q 003184 1 MTGITECTVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDDPEKGVVVEKVTEEILKDWNHLK 76 (841)
Q Consensus 1 m~GIIprav~dLF~~Ie~~~e-~efsV~vSylEIYNE~V~DLLs~~---~~~L~I~ed~~~gv~V~gLtev~V~S~eel~ 76 (841)
.+|||||++++||+.++...+ ..|.|+|||+|||||.|+|||++. ..++.+++++.++++|.|++++.|.++++++
T Consensus 103 ~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~ 182 (341)
T cd01372 103 EVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVM 182 (341)
T ss_pred cCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHH
Confidence 379999999999999998764 899999999999999999999986 4689999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCceeEEEEEEeecccccc-----CCCCcceeEeeeeEeecCCCcccccccchhhhhhh
Q 003184 77 ELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL-----GKENSTTLSASVNFVDLAGSERASQALSTGARLKE 151 (841)
Q Consensus 77 ~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~-----~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkE 151 (841)
.+|..|.++|+.+.|.+|..|||||+||+|+|.+...... .........|+|+||||||||+..++.+.|.+++|
T Consensus 183 ~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e 262 (341)
T cd01372 183 SCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKE 262 (341)
T ss_pred HHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHH
Confidence 9999999999999999999999999999999988654211 11334568899999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHhhcCC--CCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccc
Q 003184 152 GCHINRSLLTLSTVIRKLSKGR--NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVT 228 (841)
Q Consensus 152 g~~INkSLlaLg~VI~aLs~gk--~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~ 228 (841)
+..||+||++|++||.+|+.+. ..|||||+||||+||+++||||++|+||+||||...+++||++||+||++||+|+
T Consensus 263 ~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 263 GISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999765 3799999999999999999999999999999999999999999999999999985
No 18
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2e-49 Score=430.76 Aligned_cols=221 Identities=38% Similarity=0.565 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLS 80 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~-e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~ 80 (841)
+|||||++++||+.+.... +.+|.|++||+|||||.|+|||++....+.+++++.+|++|+|++++.|.|++++..+|.
T Consensus 104 ~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~ 183 (325)
T cd01369 104 KGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVIN 183 (325)
T ss_pred CChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHH
Confidence 7999999999999998765 568999999999999999999999888999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchH
Q 003184 81 ICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLL 160 (841)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLl 160 (841)
.|.++|+++.|.+|..|||||+||+|+|.+... .......++|+||||||||+..++++.|.+++|+..||+||.
T Consensus 184 ~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~-----~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~ 258 (325)
T cd01369 184 EGKSNRAVASTNMNEESSRSHSIFLITLKQENV-----ETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLS 258 (325)
T ss_pred HHHhhcccccCcCCCccccccEEEEEEEEEEec-----CCCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHH
Confidence 999999999999999999999999999987532 233467899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 003184 161 TLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227 (841)
Q Consensus 161 aLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I 227 (841)
+|++||.+|+.++..||||||||||+||+++|||||+|+||+||+|+..+++||++||+||+|||+|
T Consensus 259 ~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 259 ALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999887679999999999999999999999999999999999999999999999999986
No 19
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.8e-49 Score=428.11 Aligned_cols=215 Identities=34% Similarity=0.535 Sum_probs=203.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSI 81 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~~ 81 (841)
+|||||++++||+.+++.. ..|.|++||+|||||.|+|||++....+.+++++.++++|.|++++.|.+++|+..++..
T Consensus 105 ~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~ 183 (319)
T cd01376 105 PGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIP 183 (319)
T ss_pred cchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHH
Confidence 6999999999999987643 789999999999999999999988889999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchHH
Q 003184 82 CEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLT 161 (841)
Q Consensus 82 G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLla 161 (841)
|.++|..++|.+|..|||||+||+|+|.+... .....|+|+||||||||+..+++..|.+++|+.+||+||.+
T Consensus 184 ~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~ 256 (319)
T cd01376 184 ASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS-------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFV 256 (319)
T ss_pred HHhhhccccCcCCCccCCCeEEEEEEEEEECC-------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHH
Confidence 99999999999999999999999999987532 22678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhc
Q 003184 162 LSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 225 (841)
Q Consensus 162 Lg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK 225 (841)
|++||.+|+.+. .||||||||||+||+|+|||||+|+|||||||...+++||++||+||+|||
T Consensus 257 L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 257 LSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999764 599999999999999999999999999999999999999999999999986
No 20
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.3e-49 Score=429.30 Aligned_cols=213 Identities=34% Similarity=0.520 Sum_probs=200.3
Q ss_pred CCcHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSI 81 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~~ 81 (841)
+|||||++++||+.++... ..|.|++||+|||||.|+|||++ ..++.+++++.++++|.|++++.|.|++|++.+|..
T Consensus 109 ~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~ 186 (322)
T cd01367 109 EGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIES 186 (322)
T ss_pred CccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHH
Confidence 6999999999999998755 78999999999999999999987 578999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCccccccc-chhhhhhhhcccccchH
Q 003184 82 CEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQAL-STGARLKEGCHINRSLL 160 (841)
Q Consensus 82 G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~-s~g~rlkEg~~INkSLl 160 (841)
|.++|+++.|.+|..|||||+||+|+|.+... ....++|+||||||||+..... ..+.+++|+.+||+||+
T Consensus 187 g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~ 258 (322)
T cd01367 187 GNSLRTTGSTGANDQSSRSHAILQIILKNKKL--------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLL 258 (322)
T ss_pred HhcccccccCcCCCCcccceEEEEEEEEEecC--------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHH
Confidence 99999999999999999999999999987532 3578999999999999998765 46889999999999999
Q ss_pred HHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhc
Q 003184 161 TLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 225 (841)
Q Consensus 161 aLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK 225 (841)
+|++||.+|+.++ .||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|+|
T Consensus 259 ~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 259 ALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999865 599999999999999999999999999999999999999999999999986
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=4.2e-48 Score=420.73 Aligned_cols=223 Identities=35% Similarity=0.523 Sum_probs=210.2
Q ss_pred CCcHHHHHHHHHHHHHhcC--CCeEEEEEEEEEEEcCceeecCCCC---CCCceeeeCCCCCeEecccEEEEecCHHHHH
Q 003184 2 TGITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDDPEKGVVVEKVTEEILKDWNHLK 76 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~--e~efsV~vSylEIYNE~V~DLLs~~---~~~L~I~ed~~~gv~V~gLtev~V~S~eel~ 76 (841)
+||||+++++||+.++... +..|.|++||+|||||.|+|||++. ..++.+++++.++++|.|++++.|.|++|+.
T Consensus 102 ~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~ 181 (329)
T cd01366 102 PGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVT 181 (329)
T ss_pred CCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHH
Confidence 6999999999999999765 4799999999999999999999987 5789999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccc
Q 003184 77 ELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHIN 156 (841)
Q Consensus 77 ~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~IN 156 (841)
.+|..|.++|..+.|.+|..|||||+||+|+|.+... .......|+|+||||||+|+..+.++.+.+++|+..||
T Consensus 182 ~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~-----~~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in 256 (329)
T cd01366 182 RLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNL-----QTGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAIN 256 (329)
T ss_pred HHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcC-----CCCcEEEEEEEEEECCCCcccccccccchhhHhHhhhh
Confidence 9999999999999999999999999999999987543 23456889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccc
Q 003184 157 RSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTK 230 (841)
Q Consensus 157 kSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~ 230 (841)
+||.+|++||.+|+.+ ..|||||+||||+||+++||||++|+|||||||...+++||++||+||++|++|++.
T Consensus 257 ~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 257 KSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred hHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999986 569999999999999999999999999999999999999999999999999999863
No 22
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=7.4e-48 Score=418.60 Aligned_cols=225 Identities=40% Similarity=0.632 Sum_probs=205.4
Q ss_pred CCcHHHHHHHHHHHHHhcCC---CeEEEEEEEEEEEcCceeecCCCCC----CCceeeeCCCCC-eEecccEEEEecCHH
Q 003184 2 TGITECTVADIFDYIHRHEE---RAFVLKFSAMEIYNEAIRDLLSTDN----TPLRLLDDPEKG-VVVEKVTEEILKDWN 73 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~e---~efsV~vSylEIYNE~V~DLLs~~~----~~L~I~ed~~~g-v~V~gLtev~V~S~e 73 (841)
+||||+++++||+.++...+ ..|.|+|||+|||||.|+|||++.. .++.+++++..| ++|+|++++.|.+++
T Consensus 101 ~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~ 180 (335)
T PF00225_consen 101 PGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAE 180 (335)
T ss_dssp BSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHH
T ss_pred cchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeeccccccceeeccccccccccc
Confidence 79999999999999998765 4899999999999999999999873 479999999977 999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccc-hhhhhhhh
Q 003184 74 HLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALS-TGARLKEG 152 (841)
Q Consensus 74 el~~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s-~g~rlkEg 152 (841)
++..+|..|.++|+++.|.+|..|||||+||+|+|.+......... .....|+|+||||||+|+..+..+ .+.+++|+
T Consensus 181 ~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~-~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~ 259 (335)
T PF00225_consen 181 EALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDE-ESVKHSRLTFVDLAGSERLKKSGASDGQRLKES 259 (335)
T ss_dssp HHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEE-EEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHH
T ss_pred cccccccchhhccccccccccccccccccccccccccccccccccc-cceeecceeeeeccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998754321110 135889999999999999998876 48889999
Q ss_pred cccccchHHHHHHHHHhhcC-CCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 003184 153 CHINRSLLTLSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227 (841)
Q Consensus 153 ~~INkSLlaLg~VI~aLs~g-k~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I 227 (841)
..||+||.+|++||.+|+.+ ...|||||+||||+||+|+|||||+|+||+||+|...+++||++||+||.+||+|
T Consensus 260 ~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 260 SNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred ceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999987 5669999999999999999999999999999999999999999999999999987
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.8e-47 Score=414.70 Aligned_cols=230 Identities=43% Similarity=0.632 Sum_probs=216.6
Q ss_pred CCcHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLS 80 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~-e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~ 80 (841)
+||||+++++||+.+.+.. +..|.|+|||+|||+|.|+|||++...++.+++++.++++|.|++++.|.|++++..+|.
T Consensus 104 ~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~ 183 (335)
T smart00129 104 PGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLE 183 (335)
T ss_pred CCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHH
Confidence 5999999999999998765 679999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchH
Q 003184 81 ICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLL 160 (841)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLl 160 (841)
.|.++|.+++|.+|..|||||+||+|+|.+... +........++|+||||||+|+....++.+.+++|+..||+||.
T Consensus 184 ~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~---~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~ 260 (335)
T smart00129 184 KGNKNRTVAATKMNEESSRSHAVFTITVESKIK---NSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLS 260 (335)
T ss_pred HHHhccccccCCCCCCCCcceEEEEEEEEEEec---CCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHH
Confidence 999999999999999999999999999997532 23345578999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC-CCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeec
Q 003184 161 TLSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234 (841)
Q Consensus 161 aLg~VI~aLs~g-k~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN 234 (841)
+|++||.+|+.+ +..|||||+|+||+||+++|||+++|+||+||+|...+++||++||+||+++++|+|+|++|
T Consensus 261 ~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 261 ALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 999999999986 56799999999999999999999999999999999999999999999999999999999875
No 24
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-49 Score=461.85 Aligned_cols=253 Identities=35% Similarity=0.530 Sum_probs=232.6
Q ss_pred CcHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEcCceeecCCCCC--CCceeeeCCCCCeEecccEEEEecCHHHHHHHHH
Q 003184 3 GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLS 80 (841)
Q Consensus 3 GIIprav~dLF~~Ie~~~e~efsV~vSylEIYNE~V~DLLs~~~--~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~ 80 (841)
|||||++..||..|.+.....|.|.|||+|||++.|+|||.|.. .++.+++ +.+++.+.|+++++|.+..++...|.
T Consensus 95 Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~ 173 (913)
T KOG0244|consen 95 GVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLE 173 (913)
T ss_pred CcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEeehHHHHHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999998654 3577777 78889999999999999999999999
Q ss_pred HHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchH
Q 003184 81 ICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLL 160 (841)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLl 160 (841)
.|...|++++|+||..|||||+||++++++.... ......+++|+|||||||||.+++++.|.|++||.+||.+|+
T Consensus 174 ~g~~~RtvasTnMN~qssRshAifti~lkq~kk~----~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL 249 (913)
T KOG0244|consen 174 KGSLERTVASTNMNAQSSRSHAIFTITLKQRKKL----SKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLL 249 (913)
T ss_pred hchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHh----hccchhhhhhheeeccccccccccccchhhhhhccCcchHHH
Confidence 9999999999999999999999999999885432 223357899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC-CCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeeccccCH
Q 003184 161 TLSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSD 239 (841)
Q Consensus 161 aLg~VI~aLs~g-k~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN~~~s~ 239 (841)
+||+||.||... +.+|||||||||||||||+||||++|+||+||||+..+.+||++||+||.||++|+|+|++|.. ..
T Consensus 250 ~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d-~~ 328 (913)
T KOG0244|consen 250 ALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQD-PK 328 (913)
T ss_pred HHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhccccccccc-HH
Confidence 999999999865 4569999999999999999999999999999999999999999999999999999999999994 44
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 003184 240 KALVKHLQKELARLESELRSPA 261 (841)
Q Consensus 240 ~alik~Lq~EiarLe~eL~~~~ 261 (841)
...+..|+.+|..|+.+|-...
T Consensus 329 ~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 329 SFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5678999999999999987654
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2e-45 Score=398.51 Aligned_cols=221 Identities=42% Similarity=0.614 Sum_probs=207.2
Q ss_pred CCcHHHHHHHHHHHHHhcC--CCeEEEEEEEEEEEcCceeecCCCC--CCCceeeeCCCCCeEecccEEEEecCHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPEKGVVVEKVTEEILKDWNHLKE 77 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~--e~efsV~vSylEIYNE~V~DLLs~~--~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~ 77 (841)
+||||+++++||+.+.... +..|.|++||+|||+|.|+|||++. ..++.+++++.++++|.|++++.|.|+++++.
T Consensus 103 ~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~ 182 (328)
T cd00106 103 PGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALS 182 (328)
T ss_pred CchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHH
Confidence 6899999999999999876 5889999999999999999999997 88999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhccccc
Q 003184 78 LLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINR 157 (841)
Q Consensus 78 LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INk 157 (841)
+|..|.++|+.+.|.+|..|||||+||+|+|.+..... .......++|+||||||+|+..+.+..+.+++|+..||+
T Consensus 183 ~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~ 259 (328)
T cd00106 183 LLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTN---DGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINK 259 (328)
T ss_pred HHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCC---CCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhh
Confidence 99999999999999999999999999999998864321 111368899999999999999998899999999999999
Q ss_pred chHHHHHHHHHhhcCC-CCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhc
Q 003184 158 SLLTLSTVIRKLSKGR-NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 225 (841)
Q Consensus 158 SLlaLg~VI~aLs~gk-~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK 225 (841)
||.+|++||.+|+.+. ..|||||+||||+||+|+|||+++|+|||||+|...+++||++||+||+|||
T Consensus 260 sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 260 SLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred hHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999875 5699999999999999999999999999999999999999999999999986
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-44 Score=409.84 Aligned_cols=211 Identities=31% Similarity=0.461 Sum_probs=193.9
Q ss_pred CCeEEEEEEEEEEEcCceeecCCCCCC-----C-ceeeeCCCCCeEecccEEEEecCHHHHHHHHHHHHhhccccccccc
Q 003184 21 ERAFVLKFSAMEIYNEAIRDLLSTDNT-----P-LRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLN 94 (841)
Q Consensus 21 e~efsV~vSylEIYNE~V~DLLs~~~~-----~-L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~~G~~~R~~~sT~lN 94 (841)
+..|.|+|||+|||||-|||||.+.+. . ..+++|.++..||+|+++|.|.+.+|+++||+.|.++|++++|.+|
T Consensus 223 d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN 302 (809)
T KOG0247|consen 223 DIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLN 302 (809)
T ss_pred CcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheecc
Confidence 457999999999999999999987532 2 6678999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchHHHHHHHHHhhcC--
Q 003184 95 EKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-- 172 (841)
Q Consensus 95 ~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLlaLg~VI~aLs~g-- 172 (841)
..|||||+||+|.|.+..+. .+......|.|.|||||||||..++.+.|.|++||++||.||++||+||.+|..+
T Consensus 303 ~~SSRSHsVFtIkl~q~~~~---~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk 379 (809)
T KOG0247|consen 303 ANSSRSHSVFTIKLVQAPRS---QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQK 379 (809)
T ss_pred ccccccceeEEEEeeecccc---cccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhh
Confidence 99999999999999886553 2455678999999999999999999999999999999999999999999999753
Q ss_pred --CCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeec
Q 003184 173 --RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234 (841)
Q Consensus 173 --k~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN 234 (841)
.+.+|||||||||++++.+|.|..+.+||+||+|...+|+|+++.|+||.-|+.|.....++
T Consensus 380 ~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 380 SKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred hhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence 33589999999999999999999999999999999999999999999999999998776654
No 27
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.6e-45 Score=428.78 Aligned_cols=227 Identities=37% Similarity=0.509 Sum_probs=212.6
Q ss_pred CCCcHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEEcCceeecCCCCC--CCceeeeCCCCCeEecccEEEEecCHHHHHH
Q 003184 1 MTGITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKE 77 (841)
Q Consensus 1 m~GIIprav~dLF~~Ie~~~-e~efsV~vSylEIYNE~V~DLLs~~~--~~L~I~ed~~~gv~V~gLtev~V~S~eel~~ 77 (841)
.+||||||+++||..+.... +..|.+.+||+|||||.|+|||++.. ..+.|+++++++++|.+++.+.|.+.+++..
T Consensus 417 ~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ 496 (670)
T KOG0239|consen 417 DPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDI 496 (670)
T ss_pred cCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHH
Confidence 37999999999999999755 68999999999999999999999873 6899999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhccccc
Q 003184 78 LLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINR 157 (841)
Q Consensus 78 LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INk 157 (841)
++..|..+|.+++|.+|.+|||||+||+|+|... +........+.|+|||||||||+++++..|.|++|+.+||+
T Consensus 497 ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~-----~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INk 571 (670)
T KOG0239|consen 497 LLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI-----NELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINK 571 (670)
T ss_pred HHHHhhccccccccccchhhhccceEEEEEEecc-----ccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhch
Confidence 9999999999999999999999999999999764 23445567889999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceee
Q 003184 158 SLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQV 233 (841)
Q Consensus 158 SLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~v 233 (841)
||.+||.||.||++ +..||||||||||+|||++|||+++|+|+++|||...++.||+++|+||+|++.+...+-.
T Consensus 572 SLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 572 SLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 99999999999997 5669999999999999999999999999999999999999999999999999999877654
No 28
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-43 Score=395.60 Aligned_cols=222 Identities=32% Similarity=0.491 Sum_probs=201.8
Q ss_pred CCCcHHHHHHHHHHHHHhcC--CCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHH
Q 003184 1 MTGITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKEL 78 (841)
Q Consensus 1 m~GIIprav~dLF~~Ie~~~--e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~L 78 (841)
+-||.-++.+|+|..+..-. ...+.|.+||+|||+.+|||||+. .+.|++++|.+..+.|.||+|..|.+.+++++|
T Consensus 321 s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~l 399 (676)
T KOG0246|consen 321 SKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLEL 399 (676)
T ss_pred cccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHH
Confidence 35999999999999997522 468999999999999999999986 678999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCccccccc-chhhhhhhhccccc
Q 003184 79 LSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQAL-STGARLKEGCHINR 157 (841)
Q Consensus 79 L~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~-s~g~rlkEg~~INk 157 (841)
|..|++-|+.+.|..|..|||||+||+|.+... ......+++.||||||+||...+. +..++..||+.||+
T Consensus 400 Ie~Gns~RtsG~TsANs~SSRSHAvfQIilr~~--------~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINK 471 (676)
T KOG0246|consen 400 IEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH--------GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINK 471 (676)
T ss_pred HHhcccccccCcccCcccccccceeEeeeeecC--------CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhH
Confidence 999999999999999999999999999999653 124589999999999999998765 45566679999999
Q ss_pred chHHHHHHHHHhhcCCCCcccCCChhhhhccccccCC-CccceEEeecCCCCCCHHHHHHHHHHHHHhccccccee
Q 003184 158 SLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGG-NARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 232 (841)
Q Consensus 158 SLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGG-NsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~ 232 (841)
||+||..||+||.+++ .|+|||.||||.+|+|||=| |++|+||+||||....++.|||||+||.|+|+......
T Consensus 472 SLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 472 SLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred HHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 9999999999998755 49999999999999999988 99999999999999999999999999999999765543
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.2e-43 Score=405.16 Aligned_cols=230 Identities=42% Similarity=0.629 Sum_probs=214.8
Q ss_pred CCCcHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHHH
Q 003184 1 MTGITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELL 79 (841)
Q Consensus 1 m~GIIprav~dLF~~Ie~~~-e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL 79 (841)
.+||||+++.+||+.++... +..|.|.|||+|||||+++|||.+....+.++++...+++|.|+++..+.++++++.+|
T Consensus 113 ~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l 192 (568)
T COG5059 113 EPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLL 192 (568)
T ss_pred ccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHH
Confidence 37999999999999999755 57899999999999999999999877778899999999999999999999999999999
Q ss_pred HHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccch
Q 003184 80 SICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSL 159 (841)
Q Consensus 80 ~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL 159 (841)
..|..+|+++.|.+|..|||||+||++++.+.... ......++++||||||||++..++..+.+++||..||+||
T Consensus 193 ~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~-----~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sL 267 (568)
T COG5059 193 RKGEKNRTTASTEINDESSRSHSIFQIELASKNKV-----SGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSL 267 (568)
T ss_pred HHhhhhcccccchhccccccceEEEEEEEEEeccC-----ccceecceEEEEeeccccccchhhcccchhhhhhhhHhhH
Confidence 99999999999999999999999999999887543 2233447899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-CCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeecc
Q 003184 160 LTLSTVIRKLSK-GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 235 (841)
Q Consensus 160 laLg~VI~aLs~-gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN~ 235 (841)
++||+||.+|.. .+..|||||+|||||+||++|||+|+|.|||||+|...++++|.+||+||.+|+.|.+.+.+|.
T Consensus 268 l~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 268 LTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 999999999985 3567999999999999999999999999999999999999999999999999999999999996
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.97 E-value=2.2e-31 Score=268.57 Aligned_cols=133 Identities=39% Similarity=0.585 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhh
Q 003184 71 DWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLK 150 (841)
Q Consensus 71 S~eel~~LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlk 150 (841)
..++++.++..|.++|+++.|.+|..|||||+||+|+|.+..... ........++|+||||||||+..++++.+.+++
T Consensus 54 ~~~~~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~--~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~ 131 (186)
T cd01363 54 TVTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA--SATEQPKVGKINLVDLAGSERIDFSGAEGSRLT 131 (186)
T ss_pred HHHHHHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCC--CCccceeeeeEEEEEccccccccccCCchhhHH
Confidence 445599999999999999999999999999999999998865432 122456789999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCC
Q 003184 151 EGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSP 206 (841)
Q Consensus 151 Eg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISP 206 (841)
|+.+||+||.+|++||.+|+++ ..||||||||||+||+|+|||||+|+||+||||
T Consensus 132 e~~~in~sl~~L~~~i~~l~~~-~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 132 ETANINKSLSTLGNVISALAER-DSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999875 459999999999999999999999999999998
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.74 E-value=2.5 Score=44.69 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003184 238 SDKALVKHLQKELARLESELRSPAPASS--TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 312 (841)
Q Consensus 238 s~~alik~Lq~EiarLe~eL~~~~~~~s--~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~~~ 312 (841)
+....+..+++|++.|+.+|........ .......+...+.++..|++++.+|++++..++++++.+.......+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999877543211 11223334445666777888888888888888888877665554443
No 32
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=82.91 E-value=5.9 Score=40.15 Aligned_cols=67 Identities=25% Similarity=0.317 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003184 239 DKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 309 (841)
Q Consensus 239 ~~alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~ 309 (841)
.....++|++|+..|+.|++..... |.-+.--+.+.++.++++|++++++++...+..++.....+-
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~q----DeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~ 104 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQ----DEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVL 104 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TT----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999876543 233444567888999999999999999988888877665543
No 33
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=78.47 E-value=0.36 Score=57.82 Aligned_cols=81 Identities=41% Similarity=0.467 Sum_probs=64.7
Q ss_pred HHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchH
Q 003184 81 ICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLL 160 (841)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLl 160 (841)
.+...+....+.+|..++++|++|+........ ... ... ++.|||||+|+. -...-|.++++...+|++|.
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~----~~~--~~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~ 556 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNS----STK--ELS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLS 556 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhh----hhH--HHH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccc
Confidence 456677888899999999999999876533211 000 011 799999999999 88899999999999999999
Q ss_pred HHHHHHHHhh
Q 003184 161 TLSTVIRKLS 170 (841)
Q Consensus 161 aLg~VI~aLs 170 (841)
.++.+|.++.
T Consensus 557 ~~~d~~~~~~ 566 (568)
T COG5059 557 SLGDVIHALG 566 (568)
T ss_pred cchhhhhhcc
Confidence 9999998763
No 34
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.57 E-value=38 Score=30.21 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003184 242 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 309 (841)
Q Consensus 242 lik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~ 309 (841)
.|..|+.|+..|+.+-. ....+...|+.++.+|+.++...+.++..|+..+.
T Consensus 19 ti~~Lq~e~eeLke~n~----------------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 19 TIALLQMENEELKEKNN----------------ELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666666666532 22356777889999999999999999999887764
No 35
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.26 E-value=12 Score=36.57 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003184 279 QIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 312 (841)
Q Consensus 279 qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~~~ 312 (841)
......+++..|+.+.+.++.+++.++.++|+..
T Consensus 62 ~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 62 ELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3445566777888888999999999999999864
No 36
>PF14282 FlxA: FlxA-like protein
Probab=60.75 E-value=38 Score=32.12 Aligned_cols=59 Identities=25% Similarity=0.342 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 239 DKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVE 302 (841)
Q Consensus 239 ~~alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e 302 (841)
....|+.|++.|..|..+|.......... -..+..+++.|..+|..|..|+..++.+..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~-----~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLD-----AEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36689999999999999997665421111 124566677777777777777776665443
No 37
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=57.63 E-value=7.4 Score=47.32 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=1.1
Q ss_pred HHHHHHHHHHHhhhccccceecceeeeeecCCCCCcee--eeeehhhhh
Q 003184 664 FERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIY--MGVELKRLS 710 (841)
Q Consensus 664 F~~~~~~IieLW~~C~vslvHRtyFfLLfkGd~~D~iY--meVElRRLs 710 (841)
.++.|.+|-+||+.|++|--.|..|.-.|-.+.++.+- +|.|+-||.
T Consensus 288 I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 288 IEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp -----------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 47789999999999999999999988888766666654 888988864
No 38
>PRK11637 AmiB activator; Provisional
Probab=56.58 E-value=51 Score=38.21 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 278 LQIQKMEREIRELTKQRDLAQSRVEDL 304 (841)
Q Consensus 278 ~qi~kle~ei~eL~~qrd~~q~r~e~l 304 (841)
.+|..++++|.+++.+++.++.+++..
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333
No 39
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=54.13 E-value=45 Score=35.71 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003184 244 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 312 (841)
Q Consensus 244 k~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~~~ 312 (841)
++++++...++..+..++. +.+......+...++++++++..+.++.++.....|.+...+.+
T Consensus 130 ~~~~~~~~~lk~~~~~~~~------~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK------LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred HHHHHHHHHHHHhhhcccc------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4555677777777765432 23333344445555666666666666666665555555555444
No 40
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=53.17 E-value=73 Score=36.86 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=27.2
Q ss_pred chHHHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCC
Q 003184 158 SLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSP 206 (841)
Q Consensus 158 SLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISP 206 (841)
-|-.+-.+...-+.+ ..+.+|+---=+=|.+.+|.+++ ++||.+..
T Consensus 195 ~l~~F~~l~~~T~~R--~~f~~r~~~Yf~~l~~~f~d~a~-~~~A~l~~ 240 (406)
T PF02388_consen 195 ELDDFYDLYKETAER--KGFSIRSLEYFENLYDAFGDKAK-FFLAELNG 240 (406)
T ss_dssp HHHHHHHHHHHHHHH--TT-----HHHHHHHHHHCCCCEE-EEEEEECC
T ss_pred HHHHHHHHHHHHHhh--CCCcccCHHHHHHHHHhcCCCeE-EEEEEEcH
Confidence 366666777666653 35677776666666677766754 88888854
No 41
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.21 E-value=54 Score=36.20 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 003184 241 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 311 (841)
Q Consensus 241 alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~~ 311 (841)
..+.+++++...++.++...... ..+......+.+.+|.+.+.+|.+|+++++.+.+++.+....+++.
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~q--i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQ--IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555432111 1223445666777888888888888888888888777666555553
No 42
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.79 E-value=1.6e+02 Score=26.42 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003184 241 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 309 (841)
Q Consensus 241 alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~ 309 (841)
..|.-||-||..|+.+-.+. .....+.....+.|+.+..+|+.+-..-|.++..|+-.+.
T Consensus 18 dTI~LLQmEieELKEknn~l---------~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSL---------SQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35667888888888775432 2223344556777889999999988888888887765543
No 43
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.42 E-value=85 Score=32.26 Aligned_cols=36 Identities=11% Similarity=0.272 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003184 275 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 310 (841)
Q Consensus 275 ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~ 310 (841)
+...+++.|++++.+|.++...++..++.|...|..
T Consensus 115 ~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 115 SLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888888776653
No 44
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.88 E-value=45 Score=40.48 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003184 276 KDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 308 (841)
Q Consensus 276 kd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~ 308 (841)
++..|..|++++.+-+...+.+..++..+.++-
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555666666665555443
No 45
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.40 E-value=48 Score=36.25 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHhccC
Q 003184 241 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMER------EIRELTKQ-RDLAQSRVEDLLRMVGCD 311 (841)
Q Consensus 241 alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~------ei~eL~~q-rd~~q~r~e~l~~~~~~~ 311 (841)
..|.+|++||++|+..|... ..++-++|.+|-.|.. +++.+.++ .+.++...++.++.+...
T Consensus 225 V~i~~lkeeia~Lkk~L~qk---------dq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l 293 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQK---------DQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQL 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhh---------HHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999643 2334456666654432 23333333 445555555666655544
No 46
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=44.21 E-value=48 Score=28.85 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 269 YVALLRKKDLQIQKMEREIRELTKQRDLAQS 299 (841)
Q Consensus 269 ~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~ 299 (841)
....+++.+.++..|+.+|..|+++.+.+++
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666666677777777777776666554
No 47
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.08 E-value=2e+02 Score=26.39 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003184 242 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 309 (841)
Q Consensus 242 lik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~ 309 (841)
.|.-||-||..|+.+-.. ...........-..|+.++.+|+.+...-+.|+..|+-.+.
T Consensus 19 tI~LLqmEieELKekn~~---------L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 19 TITLLQMEIEELKEKNNS---------LSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455667777766665321 11111122223445888899999999999999988876654
No 48
>PRK11637 AmiB activator; Provisional
Probab=38.66 E-value=1.5e+02 Score=34.48 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003184 280 IQKMEREIRELTKQRDLAQSRVEDLLRMV 308 (841)
Q Consensus 280 i~kle~ei~eL~~qrd~~q~r~e~l~~~~ 308 (841)
|..++++|.++..+++.++.++.++.+.+
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444443333
No 49
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.99 E-value=1.9e+02 Score=25.83 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003184 273 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 308 (841)
Q Consensus 273 l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~ 308 (841)
+.+...++..+++++.++..+++.+...++.|...+
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555556666666666666666555554443
No 50
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.62 E-value=2e+02 Score=29.00 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 003184 242 LVKHLQKELARLESELRSPAP 262 (841)
Q Consensus 242 lik~Lq~EiarLe~eL~~~~~ 262 (841)
.+..|+.++..|+.+|.....
T Consensus 87 el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 87 ELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345555555556666654433
No 51
>PRK04406 hypothetical protein; Provisional
Probab=35.57 E-value=3.1e+02 Score=24.65 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 243 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVE 302 (841)
Q Consensus 243 ik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e 302 (841)
+..+...|..|+..+.-. ...+.+.+..+-...++|..|++++..+..++.
T Consensus 6 ~~~le~Ri~~LE~~lAfQ---------E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 6 IEQLEERINDLECQLAFQ---------EQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777776321 122334444455555555555555555544444
No 52
>PRK02119 hypothetical protein; Provisional
Probab=35.56 E-value=2.6e+02 Score=25.02 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 244 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVED 303 (841)
Q Consensus 244 k~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~ 303 (841)
..+...|..|+..+.-. ...+.+.+..+-+..++|..|++++..+..++.+
T Consensus 5 ~~~e~Ri~~LE~rla~Q---------E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQ---------ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666665321 1223344444555555555555555555444443
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=35.37 E-value=1.2e+02 Score=37.79 Aligned_cols=73 Identities=12% Similarity=0.285 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003184 241 ALVKHLQKELARLESELRSPAPASS------------TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 308 (841)
Q Consensus 241 alik~Lq~EiarLe~eL~~~~~~~s------------~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~ 308 (841)
..+..|..++++|+.+|........ .......+..+..+.+.|+..+.+|.+++..-+..++.|.+.+
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888866543310 1112233344444455555555555555555555555566666
Q ss_pred ccCCC
Q 003184 309 GCDQD 313 (841)
Q Consensus 309 ~~~~~ 313 (841)
.+.+.
T Consensus 498 ~eE~~ 502 (697)
T PF09726_consen 498 AEERR 502 (697)
T ss_pred HHHHH
Confidence 55553
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.36 E-value=2e+02 Score=32.34 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003184 280 IQKMEREIRELTKQRDLAQSRVEDLLRMV 308 (841)
Q Consensus 280 i~kle~ei~eL~~qrd~~q~r~e~l~~~~ 308 (841)
++.++.++.++..++..+++++.++.+..
T Consensus 239 l~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 239 LEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 55
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=35.30 E-value=1.3e+02 Score=32.25 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 270 VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 305 (841)
Q Consensus 270 ~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~ 305 (841)
.+.+++++.+|..|..-+..-.++||.|+.+++.|+
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888899999999999886
No 56
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.09 E-value=1.9e+02 Score=31.18 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=55.2
Q ss_pred CccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeeccc-----cCHHHHHHHHHHHHHHHHHHhcCCCCCCCcchH
Q 003184 195 NARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVV-----MSDKALVKHLQKELARLESELRSPAPASSTCDY 269 (841)
Q Consensus 195 NsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN~~-----~s~~alik~Lq~EiarLe~eL~~~~~~~s~~~~ 269 (841)
.....|.+-|-+ ..+++.+..|. ..-.|...-..... .+..+.++.++.+..+|.+-|.....
T Consensus 93 ~~~~~ltiRVP~--~~~~~~l~~l~---~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~------- 160 (262)
T PF14257_consen 93 ERSASLTIRVPA--DKFDSFLDELS---ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKT------- 160 (262)
T ss_pred cceEEEEEEECH--HHHHHHHHHHh---ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence 334444455533 56888887777 22233322221121 23345677777778887777764321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003184 270 VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 309 (841)
Q Consensus 270 ~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~ 309 (841)
-..+.++|.++.+.+.+++.++.++..|.+.+.
T Consensus 161 -------~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 161 -------VEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 233456777777777777777777776665554
No 57
>PRK04325 hypothetical protein; Provisional
Probab=34.76 E-value=2.5e+02 Score=25.16 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 245 HLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVED 303 (841)
Q Consensus 245 ~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~ 303 (841)
.+...|..|+..+.-. ...+.+.+..+-+..++|.+|++++..+..++.+
T Consensus 6 ~~e~Ri~~LE~klAfQ---------E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQ---------EDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665321 1223344445555555666666666555555544
No 58
>PRK00295 hypothetical protein; Provisional
Probab=33.19 E-value=3.2e+02 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 274 RKKDLQIQKMEREIRELTKQRDLAQSRVEDL 304 (841)
Q Consensus 274 ~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l 304 (841)
.+.+..+-+..++|..|++++..+..++.++
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666666666666666665554
No 59
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.05 E-value=1.3e+02 Score=30.97 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 276 KDLQIQKMEREIRELTKQRDLAQSRVEDLLR 306 (841)
Q Consensus 276 kd~qi~kle~ei~eL~~qrd~~q~r~e~l~~ 306 (841)
.+.+++++++++.+.+.+.+.++.+.+++.+
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666655555556665555544
No 60
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.98 E-value=86 Score=32.62 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 242 LVKHLQKELARLESELRSPAPASSTCDYVALLRK--KDLQIQKMEREIRELTKQRDLAQSRVEDLLR 306 (841)
Q Consensus 242 lik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~e--kd~qi~kle~ei~eL~~qrd~~q~r~e~l~~ 306 (841)
-...|..+|.+|...+++....- +...+.+++ ..+.+..|+++|.+|+++....+.++..+..
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~--s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTC--SYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777665543321 122333433 3356777888888888888888887776643
No 61
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.10 E-value=3.8e+02 Score=24.80 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC-CcchHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 240 KALVKHLQKELARLESELRSPAPAS-STCDYVALLRK------------KDLQIQKMEREIRELTKQRDLAQSRVEDLLR 306 (841)
Q Consensus 240 ~alik~Lq~EiarLe~eL~~~~~~~-s~~~~~~~l~e------------kd~qi~kle~ei~eL~~qrd~~q~r~e~l~~ 306 (841)
..-+..|+.++..|+..++...... ...++. .+.. ...+.+.+..+|..|+++...++.....|.+
T Consensus 18 ~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~-eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~ 96 (100)
T PF01486_consen 18 QQEIAKLRKENESLQKELRHLMGEDLESLSLK-ELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQ 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccchH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888887665432 112221 1111 2233445666777777776666666665655
Q ss_pred Hhc
Q 003184 307 MVG 309 (841)
Q Consensus 307 ~~~ 309 (841)
++.
T Consensus 97 ~~~ 99 (100)
T PF01486_consen 97 KIE 99 (100)
T ss_pred Hhc
Confidence 543
No 62
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.79 E-value=2.4e+02 Score=24.74 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 275 KKDLQIQKMEREIRELTKQRDLAQSRVEDL 304 (841)
Q Consensus 275 ekd~qi~kle~ei~eL~~qrd~~q~r~e~l 304 (841)
+.+..+-...++|..|++++..+..++.++
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555554444443
No 63
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=30.24 E-value=1.7e+02 Score=27.25 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003184 270 VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 308 (841)
Q Consensus 270 ~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~ 308 (841)
...+++...++..+.+++.+|+.+++..+.+-+.|++.+
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566677777888888888888888888877777754
No 64
>PRK00736 hypothetical protein; Provisional
Probab=29.40 E-value=3.8e+02 Score=23.58 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 275 KKDLQIQKMEREIRELTKQRDLAQSRVED 303 (841)
Q Consensus 275 ekd~qi~kle~ei~eL~~qrd~~q~r~e~ 303 (841)
+.+..+-+..++|..|++++..+..++.+
T Consensus 23 ~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 23 ELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666555555555544
No 65
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=29.30 E-value=2.3e+02 Score=33.50 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=47.5
Q ss_pred eeeccccCHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003184 231 AQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 309 (841)
Q Consensus 231 p~vN~~~s~~alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~ 309 (841)
+++......++-+..|+.+|..|..-+. ++-.+...+|++|.+++.|-+.-|..++.++++|.+.+.
T Consensus 559 ~k~e~~~~~k~s~delr~qi~el~~ive------------~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 559 AKVETDDVKKNSLDELRAQIIELLCIVE------------ALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 3333333445667788888877765543 333455678889999999999999999999998877653
No 66
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.53 E-value=4.3e+02 Score=27.40 Aligned_cols=57 Identities=23% Similarity=0.407 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 239 DKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 304 (841)
Q Consensus 239 ~~alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l 304 (841)
....+..|+.+++.|+.++. +....+.++...++.+..|+.-|.-+...++.++..+
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~---------~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIK---------DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777776663 2344555666666666666555555544444444433
No 67
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.47 E-value=2.3e+02 Score=33.36 Aligned_cols=16 Identities=50% Similarity=0.823 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 003184 243 VKHLQKELARLESELR 258 (841)
Q Consensus 243 ik~Lq~EiarLe~eL~ 258 (841)
+++.+.+|++++.++.
T Consensus 40 l~q~q~ei~~~~~~i~ 55 (420)
T COG4942 40 LKQIQKEIAALEKKIR 55 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555553
No 68
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.33 E-value=2.4e+02 Score=33.13 Aligned_cols=68 Identities=24% Similarity=0.229 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC---cchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003184 243 VKHLQKELARLESELRSPAPASS---TCDYVALLRKKDL-QIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 310 (841)
Q Consensus 243 ik~Lq~EiarLe~eL~~~~~~~s---~~~~~~~l~ekd~-qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~ 310 (841)
-..+..||++|+..|...-+..+ ..++.....+|-. -..-|+++|.+|++.+..+..++++|.+....
T Consensus 116 ~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 116 EEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 34566778888777754222111 1122222222222 23458999999999999999999988865544
No 69
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=28.24 E-value=2.5e+02 Score=28.04 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 278 LQIQKMEREIRELTKQRDLAQSRVEDLLRM 307 (841)
Q Consensus 278 ~qi~kle~ei~eL~~qrd~~q~r~e~l~~~ 307 (841)
.++++|.+++.++..++|.+..+++.|..-
T Consensus 88 qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 88 QQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666777777777777666554
No 70
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.72 E-value=52 Score=33.24 Aligned_cols=56 Identities=29% Similarity=0.371 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 242 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKD--LQIQKMEREIRELTKQRDLAQSRVEDLLR 306 (841)
Q Consensus 242 lik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd--~qi~kle~ei~eL~~qrd~~q~r~e~l~~ 306 (841)
.+..|+.++..|+.+.... .+.+.... .-...|..+|.+|+.+...++++++.|..
T Consensus 80 ei~~L~~el~~l~~~~k~l---------~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSL---------EAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666665432 12222211 12234556666666666666666665543
No 71
>PRK00736 hypothetical protein; Provisional
Probab=27.11 E-value=3.6e+02 Score=23.77 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003184 275 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 312 (841)
Q Consensus 275 ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~~~ 312 (841)
-.+.-|+.|.+.+.+-.++++.++.++..|...+.+..
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777888888888888888888887777666543
No 72
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.79 E-value=1.8e+02 Score=31.90 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003184 247 QKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 309 (841)
Q Consensus 247 q~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~ 309 (841)
...+.+|+..+...... ..+....+.....+|.+|+-+|+++.-+++.++.|..++-..+.
T Consensus 39 ~~r~~~le~~~~~~~~~--~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 39 EDRVTQLERISNAHSQL--LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665432211 12233344444555555555555555566666655555554443
No 73
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=26.73 E-value=78 Score=32.13 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=32.0
Q ss_pred ehhhhhhHHHHhhcCCccccCCccccHHHHHHHHHHHHHHHHHHHHhhC
Q 003184 705 ELKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRERETLSKLMRRRL 753 (841)
Q Consensus 705 ElRRLs~lk~~~~~~~~~~~~~~~~~~~ss~k~l~~er~~l~k~~~~rl 753 (841)
.-||.-||++....--.| +-.++|-++.|+.+|||=+|.....|
T Consensus 83 q~~rV~~Lqd~~~~hksa-----~~aLas~L~~Lr~q~e~e~keaa~qL 126 (152)
T PF15186_consen 83 QARRVQWLQDQAEEHKSA-----AWALASELKRLREQREMERKEAAFQL 126 (152)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999877542211 34689999999999998777665543
No 74
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.64 E-value=2.3e+02 Score=33.37 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhcC
Q 003184 238 SDKALVKHLQKELARLESELRS 259 (841)
Q Consensus 238 s~~alik~Lq~EiarLe~eL~~ 259 (841)
..+..|..|+.||.||+..|..
T Consensus 250 ~~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 250 AEKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999864
No 75
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=25.79 E-value=1.7e+02 Score=29.17 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=44.2
Q ss_pred ehhhhhhHHHHhhcCCcccc--CCccccHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhCC
Q 003184 705 ELKRLSFLKESFSQGNMAMQ--DGRVLSLASSERALRRERETLSKLMRRRLSADERNKLYQKWGI 767 (841)
Q Consensus 705 ElRRLs~lk~~~~~~~~~~~--~~~~~~~~ss~k~l~~er~~l~k~~~~rl~~~ere~ly~kwgi 767 (841)
|||||+-||+.|...+.... +..-..-....+.|-+..|...+.++.-+...+=|-.+.|+.+
T Consensus 53 EL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 53 ELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred HHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999976433211 1111222345667788888999999888888888877777644
No 76
>PRK09039 hypothetical protein; Validated
Probab=25.74 E-value=3e+02 Score=31.41 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhc
Q 003184 242 LVKHLQKELARLESELR 258 (841)
Q Consensus 242 lik~Lq~EiarLe~eL~ 258 (841)
.|..|+.+|+.|+.+|.
T Consensus 138 ~V~~L~~qI~aLr~Qla 154 (343)
T PRK09039 138 QVELLNQQIAALRRQLA 154 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35556666666666653
No 77
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.39 E-value=1.4e+02 Score=35.48 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003184 277 DLQIQKMEREIRELTKQR 294 (841)
Q Consensus 277 d~qi~kle~ei~eL~~qr 294 (841)
+.+|++++.++.+|+.|.
T Consensus 103 e~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 78
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.37 E-value=1.8e+02 Score=25.08 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003184 280 IQKMEREIRELTKQRDLAQS 299 (841)
Q Consensus 280 i~kle~ei~eL~~qrd~~q~ 299 (841)
+..+++++.+++++.+.++.
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 79
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.79 E-value=1.3e+02 Score=25.91 Aligned_cols=16 Identities=44% Similarity=0.738 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 003184 242 LVKHLQKELARLESEL 257 (841)
Q Consensus 242 lik~Lq~EiarLe~eL 257 (841)
.+..|++++..++.++
T Consensus 5 E~~rL~Kel~kl~~~i 20 (66)
T PF10458_consen 5 EIERLEKELEKLEKEI 20 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444454444444443
No 80
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.74 E-value=4.5e+02 Score=23.43 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 246 LQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 304 (841)
Q Consensus 246 Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l 304 (841)
+...|..|+..+ .-....+.+.+..+-+..++|..|++++..+..++.++
T Consensus 6 ~e~Ri~~LE~~l---------afQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRL---------AFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 81
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.60 E-value=2.2e+02 Score=29.96 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 240 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTK 292 (841)
Q Consensus 240 ~alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~ 292 (841)
..++.....||..|+..|+..... ..+....+++++.++.+++.++..|++
T Consensus 60 pqll~~h~eEvr~Lr~~LR~~q~~--~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 60 PQLLQRHNEEVRVLRERLRKSQEQ--ERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777643221 123344555666666666555555443
No 82
>KOG2959 consensus Transcriptional regulator [Transcription]
Probab=24.42 E-value=69 Score=33.87 Aligned_cols=55 Identities=31% Similarity=0.436 Sum_probs=35.0
Q ss_pred HhhCCCCCcccch-hhh-------hhhccCCcccchhHHH------HHHHHHHHhhhc---ccc-cccccccc
Q 003184 763 QKWGIGLNSKRRR-LQL-------ANHLWSNSKDMNRITE------SAAIIAKLIRFV---EQG-DALKGMFG 817 (841)
Q Consensus 763 ~kwgi~l~~k~rr-lql-------~~~lwt~~~d~~hv~e------sa~~vaklv~~~---e~~-~~~kemf~ 817 (841)
-+|.||..-|-|- -.| .-+-=-.-.||+.|-+ --+|.-||+.|| |+| +-+|+||.
T Consensus 115 ~~~kiPpePkg~~s~eL~~KI~k~y~~k~k~~mdmnrliq~~keFRNPsiydkLi~FcdI~E~gTnypkdm~D 187 (238)
T KOG2959|consen 115 PHWKIPPEPKGEVSTELEKKIKKFYKLKAKGIMDMNRLIQDNKEFRNPSIYDKLIDFCDIKEPGTNYPKDMWD 187 (238)
T ss_pred ccccCCCCCCCcccHHHHHHHHHHHHHHhhcchhHHHHHhhhhhccCcHHHHHHHHHhccccccccCChhhcC
Confidence 4799999988774 122 2221222346666655 357999999999 455 56777764
No 83
>PRK00846 hypothetical protein; Provisional
Probab=23.60 E-value=5.7e+02 Score=23.36 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 245 HLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 304 (841)
Q Consensus 245 ~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l 304 (841)
.+...|..|+..+.-. ...+.+.+..+-+..++|..|+.++..+..++.++
T Consensus 10 ~le~Ri~~LE~rlAfQ---------e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQ---------EQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666321 12233444555555666666666666655555544
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.55 E-value=2.7e+02 Score=34.18 Aligned_cols=65 Identities=20% Similarity=0.347 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003184 244 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 308 (841)
Q Consensus 244 k~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~ 308 (841)
+.++.++..++.+|...........+...+.+.+.++.+++.++.++..++..++.+++.+.+.+
T Consensus 401 ~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 401 RELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555443221111112223333444455555555555555544444444443333
No 85
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=23.05 E-value=4.4e+02 Score=23.27 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 240 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 304 (841)
Q Consensus 240 ~alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l 304 (841)
..+.+.|..++.....+|+..-. .+ ...+-.....|..|+..+.++...+..++..++.+
T Consensus 25 ~~~~~~L~~~i~~~~~eLr~~V~----~n-Y~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 25 RQLENKLRQEIEEKDEELRKLVY----EN-YRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777765321 12 33344556677888888888888777777666654
No 86
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.00 E-value=2.8e+02 Score=29.90 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 275 KKDLQIQKMEREIRELTKQRDLAQS 299 (841)
Q Consensus 275 ekd~qi~kle~ei~eL~~qrd~~q~ 299 (841)
..+..+..+++++.+|+.+++.+..
T Consensus 74 ~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 74 QLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554443
No 87
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.86 E-value=3.2e+02 Score=32.73 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003184 281 QKMEREIRELTKQRDLAQSRVEDLLRMV 308 (841)
Q Consensus 281 ~kle~ei~eL~~qrd~~q~r~e~l~~~~ 308 (841)
..++++.++|+.++..++..+++|.+.+
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666555
No 88
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.46 E-value=2.1e+02 Score=35.12 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 003184 276 KDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQD 313 (841)
Q Consensus 276 kd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~~~~ 313 (841)
++.+++.++.+|..|++++.....+++.|.+.+.....
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999888899888888877653
No 89
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.23 E-value=2.9e+02 Score=28.01 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003184 268 DYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 310 (841)
Q Consensus 268 ~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~ 310 (841)
+....+.+...++..+++++++++++.+.++..+....+.+|-
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgv 85 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGV 85 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEE
Confidence 4555666667777777777777777777777666655555554
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.23 E-value=3.8e+02 Score=29.40 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 003184 240 KALVKHLQKELARLESELRSPA 261 (841)
Q Consensus 240 ~alik~Lq~EiarLe~eL~~~~ 261 (841)
...|+.|..++..|+.++....
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~ 38 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELR 38 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhHHHHHHHH
Confidence 3456778888888888776543
No 91
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.09 E-value=5e+02 Score=24.92 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 272 LLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLR 306 (841)
Q Consensus 272 ~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~ 306 (841)
.+.+...++..+.+|+.+|+-+.+.++.++..+.+
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455666777778888888888877777776655
No 92
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.00 E-value=1.4e+02 Score=31.62 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 003184 242 LVKHLQKELARLESELRS 259 (841)
Q Consensus 242 lik~Lq~EiarLe~eL~~ 259 (841)
.-.+|..+|..|+.++++
T Consensus 37 ~na~L~~e~~~L~~q~~s 54 (193)
T PF14662_consen 37 GNAQLAEEITDLRKQLKS 54 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555556666655553
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.91 E-value=3.7e+02 Score=30.19 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 273 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 304 (841)
Q Consensus 273 l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l 304 (841)
+.+.+.+|..+++++.+++.++..++..++.+
T Consensus 218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455544445555555555444444433
No 94
>smart00338 BRLZ basic region leucin zipper.
Probab=21.78 E-value=3.5e+02 Score=23.02 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 276 KDLQIQKMEREIRELTKQRDLAQSRVEDLL 305 (841)
Q Consensus 276 kd~qi~kle~ei~eL~~qrd~~q~r~e~l~ 305 (841)
.+.++..|+.++.+|..+.+.++.++..|.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554443
No 95
>PRK02119 hypothetical protein; Provisional
Probab=21.70 E-value=5.8e+02 Score=22.78 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003184 271 ALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 312 (841)
Q Consensus 271 ~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~~~ 312 (841)
..+.-.+..|+.|.+.+.+-.++++.++.++..|...+.+..
T Consensus 16 ~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 16 MKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445566677777777777777888888877777666543
No 96
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.51 E-value=1.8e+02 Score=36.64 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003184 282 KMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 312 (841)
Q Consensus 282 kle~ei~eL~~qrd~~q~r~e~l~~~~~~~~ 312 (841)
.|+.+++|..+..+.+|++.++|++.+....
T Consensus 438 ~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 438 SLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 3566666777777777776666666654433
No 97
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.47 E-value=5e+02 Score=28.63 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcccccceeeccccCHHHHHHHHHHHHHHHHHHh
Q 003184 213 QTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESEL 257 (841)
Q Consensus 213 ETLsTLrFAsrAK~I~n~p~vN~~~s~~alik~Lq~EiarLe~eL 257 (841)
=++.++.++.....+...-+.-.....+.+ .|.+++..+++++
T Consensus 24 ~~~~~~l~~~~~a~~~q~~k~~~~~~~r~~--~L~~e~~s~Q~~~ 66 (247)
T COG3879 24 ISLAMLLAGVMLAAVFQTSKGESVRRARDL--DLVKELRSLQKKV 66 (247)
T ss_pred HHHHHHHHHHHHHHHHhhccCcchhhhhhh--HHHHHHHHHHHHH
Confidence 356666666666555554444333332222 4555555444443
No 98
>PRK00295 hypothetical protein; Provisional
Probab=21.41 E-value=5.1e+02 Score=22.82 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 003184 275 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 311 (841)
Q Consensus 275 ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~~ 311 (841)
-.+..|+.|.+.+.+-.++++.++.++..|.+.+.+.
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777888888888888888887776666554
No 99
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=21.33 E-value=4.1e+02 Score=27.71 Aligned_cols=60 Identities=25% Similarity=0.353 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003184 242 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 309 (841)
Q Consensus 242 lik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~ 309 (841)
-+++|++++..|+..-. ..|. ..+...+.+|..|..|+++|..-++..+..++-+.....
T Consensus 42 sm~~y~eei~~l~~~~~-~~~~-------~~l~~En~qi~~Lq~EN~eL~~~leEhq~alelIM~KyR 101 (181)
T PF05769_consen 42 SMRQYQEEIQELNELSK-NRPR-------AGLQQENRQIRQLQQENRELRQSLEEHQSALELIMSKYR 101 (181)
T ss_pred HHHHHHHHHHHHHHHhh-cccc-------hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888877754332 2222 233444677899999999999999988888776655443
No 100
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.26 E-value=3.1e+02 Score=26.35 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003184 268 DYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 310 (841)
Q Consensus 268 ~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~~~~ 310 (841)
.....++.++..|.+++.|+.-|....+.+..|++.|...+..
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777788888888888877777777777777666653
No 101
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.19 E-value=3.9e+02 Score=33.49 Aligned_cols=62 Identities=27% Similarity=0.297 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003184 242 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKME---REIRELTKQRDLAQSRVEDLLRMVGCDQ 312 (841)
Q Consensus 242 lik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle---~ei~eL~~qrd~~q~r~e~l~~~~~~~~ 312 (841)
-+-+||-||++|+..-.. ..+.+-+.-.+.++|+ +.+-.++.+++.++.|+..+++|.|+..
T Consensus 867 Elthlq~e~~~le~~Rs~---------laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~ 931 (961)
T KOG4673|consen 867 ELTHLQTELASLESIRSS---------LAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKD 931 (961)
T ss_pred hHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 356777777777766432 2334444444555554 3455678889999999999999999864
No 102
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=21.09 E-value=6.3e+02 Score=24.66 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcccccceeeccccCHHHHHHHHHHHHHHHHHHhcCC
Q 003184 215 RNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSP 260 (841)
Q Consensus 215 LsTLrFAsrAK~I~n~p~vN~~~s~~alik~Lq~EiarLe~eL~~~ 260 (841)
.+.-.||..+-...|.+.. ...+....+++|...|..+.++++..
T Consensus 8 Fd~~~fan~ll~~~~~~~~-~~ld~~~~l~kL~~~i~eld~~i~~~ 52 (132)
T PF10392_consen 8 FDPVQFANDLLKSTNNNSD-SELDISTPLKKLNFDIQELDKRIRSQ 52 (132)
T ss_pred CCHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777665555432 34456677888888888888888653
No 103
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.09 E-value=1.8e+02 Score=32.03 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 241 ALVKHLQKELARLESELRSPAPASSTCDY--------VALLRKKDLQIQKMEREIRELTKQRDLA 297 (841)
Q Consensus 241 alik~Lq~EiarLe~eL~~~~~~~s~~~~--------~~~l~ekd~qi~kle~ei~eL~~qrd~~ 297 (841)
.-|..|+.+|+..+.+|..+.......+. .......+..|++=++||++|+.++..+
T Consensus 194 ~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 194 NSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778888888888888765332111100 0111134556666677777777766654
No 104
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=21.05 E-value=2.6e+02 Score=33.00 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=30.8
Q ss_pred HHHHHHHHhcccccceeeccccCHHHHHHHHHHHHHHHHHH
Q 003184 216 NTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESE 256 (841)
Q Consensus 216 sTLrFAsrAK~I~n~p~vN~~~s~~alik~Lq~EiarLe~e 256 (841)
-.|+|.++.+-++++|+.+. .+...-|.+|+..|..|+.-
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~-l~fe~pi~ele~ki~el~~~ 95 (431)
T PLN03230 56 GALKILNRFKPLKNKPKPVT-LPFEKPIVDLENRIDEVREL 95 (431)
T ss_pred cHHHHHHhcCCCCCCCCCCc-cchhhHHHHHHHHHHHHHhh
Confidence 35899999999999999664 45555677888888777664
No 105
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.80 E-value=4.9e+02 Score=29.71 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC------------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 239 DKALVKHLQKELARLESELRSPA------------PASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLR 306 (841)
Q Consensus 239 ~~alik~Lq~EiarLe~eL~~~~------------~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~ 306 (841)
.+.++.+|+..-..|+...+... +..........+.+...+...|..++..|++.+..++..+.-|..
T Consensus 28 yKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 28 YKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 34566777766666666443222 112234556677788888888999999999888888877764544
Q ss_pred HhccCC
Q 003184 307 MVGCDQ 312 (841)
Q Consensus 307 ~~~~~~ 312 (841)
.+...+
T Consensus 108 ~la~~r 113 (319)
T PF09789_consen 108 KLARQR 113 (319)
T ss_pred HHHhhh
Confidence 454443
No 106
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.65 E-value=4e+02 Score=24.83 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 240 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLR 306 (841)
Q Consensus 240 ~alik~Lq~EiarLe~eL~~~~~~~s~~~~~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~ 306 (841)
...+.+++..+...+..|+....+ ...-+.+++|...++.++...+.++..|.+
T Consensus 11 Eekl~~cr~~le~ve~rL~~~eLs-------------~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 11 EEKLAQCRRRLEAVESRLRRRELS-------------PEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCC-------------hHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 345666777777777777665433 122234566677777777766666665544
No 107
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.63 E-value=3.2e+02 Score=35.75 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003184 241 ALVKHLQKELARLESEL 257 (841)
Q Consensus 241 alik~Lq~EiarLe~eL 257 (841)
..+..|.++|+.++.++
T Consensus 372 ~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666666665
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.50 E-value=2e+02 Score=32.46 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=3.1
Q ss_pred hhhhhhcc
Q 003184 615 IQTFVAGL 622 (841)
Q Consensus 615 ~~~~v~~l 622 (841)
+.++|..+
T Consensus 245 ~L~~~~q~ 252 (314)
T PF04111_consen 245 FLDCLQQL 252 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334333
No 109
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.45 E-value=3.4e+02 Score=29.77 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 276 KDLQIQKMEREIRELTKQRDLAQSRVEDLLR 306 (841)
Q Consensus 276 kd~qi~kle~ei~eL~~qrd~~q~r~e~l~~ 306 (841)
.+..|..++.++.+++.+.......+++|+.
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666556666554
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.45 E-value=7.6e+02 Score=24.23 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003184 277 DLQIQKMEREIRELTKQ 293 (841)
Q Consensus 277 d~qi~kle~ei~eL~~q 293 (841)
..++..|+.++.+|..+
T Consensus 67 ~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 67 KKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555443
No 111
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=20.24 E-value=4.9e+02 Score=24.01 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 270 VALLRKKDLQIQKMEREIRELTKQRDLAQSR 300 (841)
Q Consensus 270 ~~~l~ekd~qi~kle~ei~eL~~qrd~~q~r 300 (841)
.....+.=.+|..+|.+|..|+++...+.-+
T Consensus 53 p~~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 53 PKKAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566777777777777776655443
No 112
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.12 E-value=4.5e+02 Score=22.67 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003184 275 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 307 (841)
Q Consensus 275 ekd~qi~kle~ei~eL~~qrd~~q~r~e~l~~~ 307 (841)
..+..+..+++|++++++.++.+...+++++..
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777778888777777777766553
Done!