RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 003186
(840 letters)
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 1295 bits (3355), Expect = 0.0
Identities = 436/810 (53%), Positives = 552/810 (68%), Gaps = 21/810 (2%)
Query: 33 ASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSM 92
I H++Y+ P + + A A +VRDRL+++WN T ++ D K+ YYLS+
Sbjct: 1 KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSL 60
Query: 93 EFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSM 152
EFL GR L N + +L + + +AL LG LE++ EQE DA LGNGGLGRLA+CFLDS+
Sbjct: 61 EFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSL 120
Query: 153 ATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVM 212
ATL LP +GYG+RY YGLFKQKI Q E+ ++WL +PWE+ R DV PVRF G V
Sbjct: 121 ATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRVE 180
Query: 213 VNPNGTR---KWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
+G R +WV GE V AV YD PIPGY T +LRLW A+AS E+F+L FN G Y
Sbjct: 181 HYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAEAS-EEFDLDAFNRGDY 239
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSE 329
A + +RA+ I VLYP DSTEEGK LRLKQQ+F SASLQD+I RFK K+ SE
Sbjct: 240 IRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFK--KTHGPLSE 297
Query: 330 FPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWS 389
FP KVA+QLNDTHP LAIPELMR+L+DEEGL WDEAWDITT+T AYTNHT+LPEALEKW
Sbjct: 298 FPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWP 357
Query: 390 QAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVV 449
+ +LLPRH+EII EI++RF+ VR+ E +I M I++ +K VRMA+L +V
Sbjct: 358 VDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRMSIIEEGGEK-QVRMAHLAIV 416
Query: 450 SAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWL 509
+H+VNGVA LHS++LK +F D+ L+P K NKTNGITPRRWL NP LS +IT+ +
Sbjct: 417 GSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETI 476
Query: 510 KTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQ 569
D WVT+LD L L FAD+ E+ + K A+K+ LA YI + TGV +DP+SLFD+Q
Sbjct: 477 GDD-WVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDVQ 535
Query: 570 VKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLV 629
VKRIHEYKRQLLN+L I+ Y ++KE PRT + GGKA Y AK I+KL+
Sbjct: 536 VKRIHEYKRQLLNVLHIIHLYNRIKENPN---ADIVPRTFIFGGKAAPGYYMAKLIIKLI 592
Query: 630 NDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSL 689
N V +VVN DP+V LKVVF+PNYNVS+AE +IP ++LS+ ISTAG EASGT NMKF L
Sbjct: 593 NAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML 652
Query: 690 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDG--LFKPDPRFEEAKQ 747
NG L IGTLDGANVEI +E+GEEN F+FG AE+V LR ++ DP
Sbjct: 653 NGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRANGYYPADYYEADPELRRVLD 712
Query: 748 FIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKW 804
I SG F D + PL+DSL D +LV DF SY++AQ++VD Y+DQ++W
Sbjct: 713 QIASGFFSPGDPGEFRPLVDSLLNG-----NDEYLVLADFESYVDAQEKVDALYRDQEEW 767
Query: 805 LKMSILSTAGSGKFSSDRTIAQYAKEIWNI 834
+ SIL+ A SGKFSSDRTI +YA++IWN+
Sbjct: 768 ARKSILNIARSGKFSSDRTIREYAEDIWNV 797
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases.
This family consists of phosphorylases. Members use
phosphate to break alpha 1,4 linkages between pairs of
glucose residues at the end of long glucose polymers,
releasing alpha-D-glucose 1-phosphate. The nomenclature
convention is to preface the name according to the
natural substrate, as in glycogen phosphorylase, starch
phosphorylase, maltodextrin phosphorylase, etc. Name
differences among these substrates reflect differences
in patterns of branching with alpha 1,6 linkages.
Members include allosterically regulated and unregulated
forms. A related family, TIGR02094, contains examples
known to act well on particularly small alpha 1,4
glucans, as may be found after import from exogenous
sources [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 794
Score = 1251 bits (3240), Expect = 0.0
Identities = 436/807 (54%), Positives = 552/807 (68%), Gaps = 21/807 (2%)
Query: 36 ISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFL 95
I YH++Y+ + P + A A++VRDRL+ +W ET + + KQ YYLS EFL
Sbjct: 1 ILYHLEYTYGKTIDDATPRDLYTALAKAVRDRLVDRWLETQEKYRDNNQKQVYYLSAEFL 60
Query: 96 QGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATL 155
GR L N + +L + + +AL LG LEEI E E DA LGNGGLGRLA+CFLDS+ATL
Sbjct: 61 MGRLLGNNLLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATL 120
Query: 156 NLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNP 215
LPA GYG+RY YGLFKQKI Q E+ +DWL +PWE+ R D + VRF G V + P
Sbjct: 121 GLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRVELQP 180
Query: 216 NG---TRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESA 272
+ +WV E V A+ YD+P+PGY+T +LRLW A+A E+F+L FN G Y A
Sbjct: 181 DSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAEAP-EEFDLDAFNAGDYYEA 239
Query: 273 AQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPS 332
+ +RA+ I VLYP DST EGK LRLKQQ+F SASLQD+I R E + S+FP
Sbjct: 240 VEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLE--THPDLSDFPK 297
Query: 333 KVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAV 392
KVA+QLNDTHP LAIPELMRLL+DEEG+ WDEAWDITT+T AYTNHT+LPEALEKW +
Sbjct: 298 KVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDL 357
Query: 393 MWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAH 452
KLLPRH+EII EI++RF+A + + E+KI M I++ K VRMANL +V +H
Sbjct: 358 FQKLLPRHLEIIYEINRRFLAELAAKGPGDEAKIRRMSIIEEGQSK-RVRMANLAIVGSH 416
Query: 453 TVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTD 512
+VNGVA LH+++LK DL D+ L+P K NKTNGITPRRWLR NP LS ++T+ + D
Sbjct: 417 SVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTETIG-D 475
Query: 513 QWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKR 572
W+T+LDLL L +AD++E E+ K A+K+ LA YI TGV +DPNS+FD+QVKR
Sbjct: 476 DWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDVQVKR 535
Query: 573 IHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDV 632
+HEYKRQLLN+L IY Y ++KE P++ PRT++ GGKA Y AK I+KL+N V
Sbjct: 536 LHEYKRQLLNVLHVIYLYNRIKEDPPKDI---VPRTVIFGGKAAPGYHMAKLIIKLINSV 592
Query: 633 GEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGC 692
EVVN DP V LKVVFVPNYNVS+AEL+IP ++LS+ ISTAG EASGT NMKF LNG
Sbjct: 593 AEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGA 652
Query: 693 LIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKE--REDGLFKPDPRFEEAKQFIR 750
L IGTLDGANVEIR+E+G EN F+FG E+V LR++ ++ DP + I
Sbjct: 653 LTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKGYNPREYYEADPELKRVLDLIS 712
Query: 751 SGAFG---SYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKM 807
SG F + PL DSL + GD F V DF +Y++AQ+RVD Y+DQ +W K
Sbjct: 713 SGTFSPGDPGLFRPLYDSLLNH-----GDPFFVLADFAAYVDAQERVDALYRDQLEWTKK 767
Query: 808 SILSTAGSGKFSSDRTIAQYAKEIWNI 834
SIL+ A SGKFSSDRTI +YAKEIW++
Sbjct: 768 SILNIANSGKFSSDRTIREYAKEIWHV 794
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 1177 bits (3046), Expect = 0.0
Identities = 431/726 (59%), Positives = 524/726 (72%), Gaps = 19/726 (2%)
Query: 116 ALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKI 175
AL LG LEE+ E+E DA LGNGGLGRLA+CFLDS+ATL LPA+GYG+RY YG+F+QKI
Sbjct: 1 ALKELGLNLEELLEEENDAGLGNGGLGRLAACFLDSLATLGLPAYGYGIRYEYGMFEQKI 60
Query: 176 TKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIP 235
Q E+ +DWLE +PWE+ R DV +PVRF+G V KW EVV AVAYD P
Sbjct: 61 VDGWQVELPDDWLEYGNPWEIERPDVRYPVRFYGKVEEKEGRKTKWDDTEVVLAVAYDTP 120
Query: 236 IPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEG 295
IPGY+T NT +LRLW AKAS E+FNL FNDG Y +A + +RA+ I VLYP D+T EG
Sbjct: 121 IPGYRTNNTNTLRLWSAKAS-EEFNLADFNDGDYLAAVEDKNRAENISRVLYPNDNTFEG 179
Query: 296 KLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLM 355
K LRLKQQ+FL SA+LQD+I RFK KS + SEFP KVA+QLNDTHPTLAIPELMR+L+
Sbjct: 180 KELRLKQQYFLVSATLQDIIRRFK--KSHKSLSEFPDKVAIQLNDTHPTLAIPELMRILI 237
Query: 356 DEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMV 415
DEEGL WDEAW+ITT+T AYTNHTVLPEALEKW ++ KLLPRH++II EI++RF+ +V
Sbjct: 238 DEEGLSWDEAWEITTKTFAYTNHTVLPEALEKWPVHLVEKLLPRHLQIIYEINERFLKLV 297
Query: 416 RSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVS 475
E K+ M I+D K VRMA+L +V +H VNGVA LHSD++K DLF D+
Sbjct: 298 WEKWPGDEDKLRRMSIIDEGAGK-RVRMAHLAIVGSHAVNGVAALHSDLVKKDLFPDFHE 356
Query: 476 LWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQA 535
LWPNK QNKTNGITPRRWL NP L+ IITK L D+WVT+L+ L+ L FAD+
Sbjct: 357 LWPNKFQNKTNGITPRRWLLQANPGLAAIITKSLG-DEWVTDLEQLIKLEPFADDPAFIE 415
Query: 536 EWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKE 595
EW K A+K+ LA+YI + TGV ++PN+LFD+QVKRIHEYKRQLLN+L IYRY ++KE
Sbjct: 416 EWAEIKQANKQRLAEYIEKETGVVVNPNALFDVQVKRIHEYKRQLLNVLHVIYRYNRIKE 475
Query: 596 MSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYN 655
P K PR ++ GGKA Y AKRI+KL+N V +VVN DP V LKVVF+PNY
Sbjct: 476 DPP---KDVVPRVVIFGGKAAPGYYMAKRIIKLINSVADVVNNDPAVGDKLKVVFLPNYR 532
Query: 656 VSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEENFF 715
VS+AE +IP S++S+ ISTAG EASGTSNMKF+LNG L IGTLDGANVEI +E+GEEN F
Sbjct: 533 VSLAEKIIPASDISEQISTAGTEASGTSNMKFALNGALTIGTLDGANVEIAEEVGEENIF 592
Query: 716 LFGAVAEQVPKLRKE--REDGLFKPDPRFEEAKQFIRSGAFG---SYDYNPLLDSLEGNT 770
+FG AE+V LRK+ R +K DPR + I SG F + +LDSL
Sbjct: 593 IFGLTAEEVEALRKKGYRSREYYKKDPRLRQVLDQIISGFFSPEDPDRFRDILDSL---- 648
Query: 771 GYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKE 830
GDY+LV DFPSY++AQ RVD+ YKD++ W K SIL+ A SGKFSSDRTI +YAK
Sbjct: 649 --QGGDYYLVFADFPSYVDAQKRVDELYKDREAWTKKSILNIANSGKFSSDRTIKEYAKR 706
Query: 831 IWNITE 836
IW I
Sbjct: 707 IWGIEP 712
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 803 bits (2077), Expect = 0.0
Identities = 343/750 (45%), Positives = 470/750 (62%), Gaps = 24/750 (3%)
Query: 89 YLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCF 148
Y+SMEFL GR N + +L + D L L ++ E+E D ALGNGGLGRLA+CF
Sbjct: 63 YISMEFLIGRLTGNNLLNLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACF 122
Query: 149 LDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRF- 207
LDSMAT+ PA GYGL Y+YGLF+Q Q E +DW PW RH+ V+
Sbjct: 123 LDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRDSYPW--FRHNEALDVQVG 180
Query: 208 FGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDG 267
G + +G +W + A+D+P+ GY+ LRLW A A F+L +FNDG
Sbjct: 181 IGGKVTKQDGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDG 239
Query: 268 QYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQW 327
+ A Q A+++ VLYP D+ GK LRL QQ+F C+ S+ D ILR + +GR+
Sbjct: 240 DFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVAD-ILR-RHHLAGRKL 297
Query: 328 SEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEK 387
E P +QLNDTHPT+AIPEL+R+L+DE L WD+AW IT++T AYTNHT++PEALE
Sbjct: 298 HELPDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALEC 357
Query: 388 WSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLC 447
W + ++ LLPRHM+II+EI+ RF +V T + + ++ + VRMANLC
Sbjct: 358 WDEKLVKSLLPRHMQIIKEINTRFKTLVEKTWPGDKKVWAKLAVVHDKQ----VRMANLC 413
Query: 448 VVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITK 507
VVS VNGVA LHSD++ DLF +Y LWPNK N TNGITPRRW++ CNP L+ ++ K
Sbjct: 414 VVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDK 473
Query: 508 WLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFD 567
LK + W +LD L+ L ++AD+ + ++ K A+K LA+++ + TG+ I+P ++FD
Sbjct: 474 TLKKE-WANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFD 532
Query: 568 IQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVK 627
+Q+KR+HEYKRQ LN+L + YK+++E +PQ PR + G KA Y AK I+
Sbjct: 533 VQIKRLHEYKRQHLNLLHILALYKEIRE-NPQ--ADRVPRVFLFGAKAAPGYYLAKNIIF 589
Query: 628 LVNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKF 687
+N V EV+N DP V LKVVF+P+Y VS AELLIP +++S+ ISTAG EASGT NMK
Sbjct: 590 AINKVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKL 649
Query: 688 SLNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKERED--GLFKPDPRFEEA 745
+LNG L +GTLDGANVEI +++GEEN F+FG EQV L + D K D +
Sbjct: 650 ALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVKALLAKGYDPVKWRKKDKVLDAV 709
Query: 746 KQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQK 802
+ + SG + D ++ +L SL+ GD +LV DF +Y+EAQ +VD Y+DQ+
Sbjct: 710 LKELESGKYSDGDKHAFDQMLHSLKQG-----GDPYLVLADFAAYVEAQKQVDALYRDQE 764
Query: 803 KWLKMSILSTAGSGKFSSDRTIAQYAKEIW 832
W + +IL+TA G FSSDR+I Y IW
Sbjct: 765 AWTRAAILNTARCGMFSSDRSIRDYQARIW 794
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 794 bits (2053), Expect = 0.0
Identities = 345/810 (42%), Positives = 458/810 (56%), Gaps = 71/810 (8%)
Query: 29 PSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTY 88
+A N+ + + + +PE + A VR+ L W D KQ Y
Sbjct: 6 LEQLAYNLWWSLDTTAGKLFRDADPEDWYEALHNPVRELLAADWLRLNQLARDEDFKQVY 65
Query: 89 YLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCF 148
YLSMEFL GR L N + +L I + +AL LG+ L E E E D LG GGLGRLA CF
Sbjct: 66 YLSMEFLIGRLLGNNLWNLGIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCF 124
Query: 149 LDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFF 208
LDS A L LP GYGLRYRYG F+Q Q E+ ++WL+ +PWE +R
Sbjct: 125 LDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDA-------- 176
Query: 209 GSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQ 268
+ V YD+P+PGY ++LRLW A+ L FN G+
Sbjct: 177 -------------------EGVPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFNVGE 216
Query: 269 YESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWS 328
++ A+ I VLYPGDS E LRLKQ++FL SA +QD++ R
Sbjct: 217 NKN------DARNITRVLYPGDSKE----LRLKQEYFLGSAGVQDILARGH--LEHHDLD 264
Query: 329 EFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKW 388
LNDTHP LAIPELMRLL+DEEGL WDEAW+I +T YTNHT LPEALE W
Sbjct: 265 VLADH----LNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETW 320
Query: 389 SQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCV 448
+ KLLPRH++II EI+ RF+ VR L I ++ V MA L +
Sbjct: 321 PVELFKKLLPRHLQIIYEINARFLPEVRLL--YLGDLIRRGSPIEE------VNMAVLAL 372
Query: 449 VSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKW 508
V +H+VNGV++LHS++ K FAD+ L+P K+ N TNGITPRRWL NP L+ ++ +
Sbjct: 373 VGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAPANPGLADLLDEK 432
Query: 509 LKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDI 568
+ D+W+ +LD+L L FAD+ + K +KK LA+ I TG+ +DPN+LFD
Sbjct: 433 IG-DEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDG 491
Query: 569 QVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMI-GGKAFATYTNAKRIVK 627
Q +RIHEYKRQLLN+L Y+ LKE PR +I GKA AK I+K
Sbjct: 492 QARRIHEYKRQLLNLLDIERLYRILKE-------DWVPRVQIIFAGKAHPADYAAKEIIK 544
Query: 628 LVNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKF 687
L+NDV +V+N + LKVVF+PNY+VS+AELLIP +++ + I TAG EASGTSNMK
Sbjct: 545 LINDVADVIN------NKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKA 598
Query: 688 SLNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKERED---GLFKPDPRFEE 744
+LNG L +GTLDGANVEI + +G EN ++FG E+V LR + D ++ + +
Sbjct: 599 ALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDPNALYYELENEVKP 658
Query: 745 AKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKW 804
I G F + + ++ D +V YDF +Y+ AQ+ VD Y+DQ+ W
Sbjct: 659 VLDEIIDGRFSPGWKSRFKNLIDSLLPKFGTDRMMVLYDFKAYVPAQEEVDALYRDQEAW 718
Query: 805 LKMSILSTAGSGKFSSDRTIAQYAKEIWNI 834
K +IL+ A SG FSSDRTI +YA EIW+I
Sbjct: 719 TKKAILNIANSGLFSSDRTIREYAGEIWHI 748
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 778 bits (2011), Expect = 0.0
Identities = 363/816 (44%), Positives = 522/816 (63%), Gaps = 25/816 (3%)
Query: 31 AIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYL 90
A+ +I+Y + ++ P + AT +VRDRL+++W + + +Q YYL
Sbjct: 16 ALKHSIAYKLMFTIGKDPVIANKHEWLNATLFAVRDRLVERWLRSNRAQLSQETRQVYYL 75
Query: 91 SMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLD 150
SMEFL GRTL+NA+ SL I + AL +G LEE+ ++E D LGNGGLGRLA+CFLD
Sbjct: 76 SMEFLIGRTLSNALLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLD 135
Query: 151 SMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGS 210
S+ATL LP GYG+RY YG+FKQ I Q+E + WLE +PWE RH+ + VRF G
Sbjct: 136 SLATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPDYWLEYGNPWEFKRHNTRYKVRFGGR 195
Query: 211 VMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYE 270
+ TR W+ E + AVAYD IPGY T T +LRLW A+AS+E NL +FN G Y
Sbjct: 196 IQQEGKKTR-WIETEEILAVAYDQIIPGYDTDATNTLRLWSAQASSE-INLGKFNQGDYF 253
Query: 271 SAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEF 330
+A + + ++ + VLYP DST G+ LRL+Q++FL SA++QD++ R + + +
Sbjct: 254 AAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSR--HYQLHKTYDNL 311
Query: 331 PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQ 390
K+A+ LNDTHP L+IPELMRLL+DE WD+A+++ + +YTNHT++ EALE W
Sbjct: 312 ADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPV 371
Query: 391 AVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILD-NNPKKPVVRMANLCVV 449
++ K+LPRH++II EI+ F+ ++ + + I+D +N ++ VRMA L VV
Sbjct: 372 DMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDESNGRR--VRMAWLAVV 429
Query: 450 SAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWL 509
+H VNGV++LHS+++ LFAD+ ++P + N TNG+TPRRWL NP LS ++ + +
Sbjct: 430 VSHKVNGVSELHSNLMVQSLFADFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHI 489
Query: 510 KTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQ 569
W T+L L L+Q D + AK+ +KK LA+YI + V ++P +LFD+Q
Sbjct: 490 GR-TWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQ 548
Query: 570 VKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLV 629
+KRIHEYKRQL+N+L I RY ++K + PR + GKA + Y AK I+ L+
Sbjct: 549 IKRIHEYKRQLMNVLHVITRYNRIKADPDAKW---VPRVNIFAGKAASAYYMAKHIIHLI 605
Query: 630 NDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSL 689
NDV +V+N DP++ LKVVF+PNY+VS+A+L+IP ++LS+ IS AG EASGTSNMKF+L
Sbjct: 606 NDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFAL 665
Query: 690 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKE----REDGLFKPDPRFEEA 745
NG L IGTLDGANVE+ + +GEEN F+FG AE+V LR++ RE ++ D +
Sbjct: 666 NGALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVEALRRQGYKPRE--YYEKDEELHQV 723
Query: 746 KQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQK 802
I SG F + Y L+DSL GD++ V D+ SY++ QD+VD+ Y++Q+
Sbjct: 724 LTQIGSGVFSPEEPGRYRDLVDSL-----INFGDHYQVLADYRSYVDCQDKVDELYRNQE 778
Query: 803 KWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 838
+W + ++L+ A G FSSDRTI +YA EIW+I R
Sbjct: 779 EWTRKAMLNIANMGYFSSDRTIKEYADEIWHIDPVR 814
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/pfam00343.
Length = 601
Score = 120 bits (303), Expect = 3e-28
Identities = 128/589 (21%), Positives = 225/589 (38%), Gaps = 122/589 (20%)
Query: 139 GGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQG-QEEVAEDWLEKFSPWEVV 197
GGLG LA L S + L LP GL Y+ G F+Q++ + G Q+E + + P E V
Sbjct: 19 GGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKV 78
Query: 198 RHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAE 257
G+ ++ + I G + ++W +
Sbjct: 79 LDT----------------------DGKWLKI---SVRIRG----RDVYAKVWRVQVGRV 109
Query: 258 DFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILR 317
L D ++ + I LY GD +R+ Q+ L ++ +
Sbjct: 110 PLYLL---DTNIPENSEDD---RWITGRLYGGDKE-----MRIAQEIVLGIGGVR-ALRA 157
Query: 318 FKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTN 377
LN+ H E +R L+ +GL ++EAW+ ++ +T
Sbjct: 158 LGIDPDV-----------YHLNEGHAAFVTLERIRELI-AQGLSFEEAWEAVRKSSLFTT 205
Query: 378 HTVLPEALEKWSQAVMWK-LLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNP 436
HT +P + + + +M K + ++ +A+ R D
Sbjct: 206 HTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQ-LLALGRENPDD--------------- 249
Query: 437 KKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNK------TNGITP 490
M L + + NGV++LH ++ ++ L+P + + TNG+
Sbjct: 250 -PEPFNMTVLALRLSRIANGVSKLHGEV-SRKMWQF---LYPGYEEEEVPIGYVTNGVHN 304
Query: 491 RRWLRFCNPELSKIITKWLKTD--QWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHL 548
W PEL + ++L + + + + +L + D EL WE + K L
Sbjct: 305 PTW---VAPELRDLYERYLGENWRELLADEELWEAIDDIPDE-EL---WE-VHLKLKARL 356
Query: 549 ADYIWRVTGV-----------------TIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYK 591
DYI R +DP+ L +R YKR L I + R
Sbjct: 357 IDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADL-IFRDLERLA 415
Query: 592 KLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFV 651
++ ++ ER P I+ GKA K I++ + + + PE ++VF+
Sbjct: 416 RI--LNNPER----PVQIVFAGKAHPADGEGKEIIQRIVEFSK----RPEFRG--RIVFL 463
Query: 652 PNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDG 700
NY++++A L+ G ++ + +EASGTS MK ++NG L + LDG
Sbjct: 464 ENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDG 512
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea.
Length = 778
Score = 107 bits (269), Expect = 9e-24
Identities = 141/608 (23%), Positives = 234/608 (38%), Gaps = 158/608 (25%)
Query: 139 GGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVR 198
GGLG LA L + + L LP G GL YR G F+Q++ G W+
Sbjct: 106 GGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADG--------------WQQET 151
Query: 199 HDV-------VFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWD 251
+ V + PVR + +G V + +PG T+ R+W
Sbjct: 152 YPVNDFEQLPLEPVR-------DADGEPVRV----------SVELPGR----TVYARVWK 190
Query: 252 AKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASL 311
A+ L + + + I LY GD R++Q+ L
Sbjct: 191 AQVGRVPLYLLDTDIPENSPDDR------GITDRLYGGDQE-----TRIQQEILL----- 234
Query: 312 QDMILRFKERKSG-------RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDE 364
G R P+ +N+ H E +R LM E GL +DE
Sbjct: 235 ------------GIGGVRALRALGIKPT--VYHMNEGHAAFLGLERIRELMAEGGLSFDE 280
Query: 365 AWDITTRTVAYTNHTVLPEALEKWSQAVMWKLL---PRHMEIIEEIDKRFIAMVRSTRSD 421
A + + +T HT +P +++ ++ + R + + + RF+A+ R D
Sbjct: 281 ALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSRD---RFLALGRENPGD 337
Query: 422 LESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWP--- 478
MA L + A NGV++LH ++ ++FA LWP
Sbjct: 338 ---------------DPEPFNMAVLALRLAQRANGVSRLHGEV-SREMFAG---LWPGFP 378
Query: 479 ---NKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNT---E 532
+ + TNG+ W+ PE+ ++ ++L W L + D+ E
Sbjct: 379 VEEVPIGHVTNGVHVPTWV---APEMRELYDRYL-GGDW-RERPTDPELWEAVDDIPDEE 433
Query: 533 LQAEWESAKMASKKHLADYI-------WRVTGVT----------IDPNSL---FDIQVKR 572
L WE + ++ L +++ W G + +DPN L F +R
Sbjct: 434 L---WE-VRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGF---ARR 486
Query: 573 IHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDV 632
YKR L +L R K+L ++ ER P + GKA K +++ + +
Sbjct: 487 FATYKRATL-LLRDPERLKRL--LNDPER----PVQFIFAGKAHPADEPGKELIQEIVEF 539
Query: 633 GEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGC 692
PE ++VF+ +Y++++A L+ G ++ + +EASGTS MK +LNG
Sbjct: 540 SR----RPEFRG--RIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGG 593
Query: 693 LIIGTLDG 700
L + LDG
Sbjct: 594 LNLSVLDG 601
>gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), B subunit [DNA replication,
recombination, and repair].
Length = 635
Score = 32.9 bits (76), Expect = 0.88
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 565 LFDIQVKRIHEY------KRQLLNILGA-----IYRYKKLKEMSPQERKKTT--PRTIMI 611
L+ ++ + Y +LL LG I RYK L EM+P + +TT P T
Sbjct: 534 LYKVKKGKKTFYAYDDEELEKLLERLGKKKGYEIQRYKGLGEMNPDQLWETTMDPETRR- 592
Query: 612 GGKAFATYTNAKRIVKLVN 630
T +A ++ +
Sbjct: 593 --LLQVTIEDADEADEIFS 609
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 31.4 bits (71), Expect = 2.2
Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 29/187 (15%)
Query: 485 TNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMAS 544
T P ++LR +L +I KWL+ ++ D+L L
Sbjct: 83 TAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALCMVYSEN------------G 130
Query: 545 KKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKT 604
K Y R+ G ID HEY R L + + + + +
Sbjct: 131 KHKSLAY--RLEGNIIDLKEWG-------HEYVRHLAGEIAEVKNDQNEMDAPSFADTRD 181
Query: 605 TPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDP--EVNSYLKVVFVPNYNVSVAELL 662
I+ F + + L+ +VG + + ++Y +V Y LL
Sbjct: 182 LGLEIV---PFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCL---YLEDCVPLL 235
Query: 663 IPGSELS 669
P +++
Sbjct: 236 PPPEDVA 242
>gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy
production and conversion].
Length = 472
Score = 30.8 bits (70), Expect = 3.4
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 26/122 (21%)
Query: 68 LIQQWNETYHHFNKVDPKQTYYLSMEFLQ-----------GRTLTNAIGSLDIQNAYADA 116
++ E +F +V K L + G L+N L QNA
Sbjct: 261 DLELLEEIAEYFREVRKKYKGLLEPQAKGVDPRILIYQVPGGMLSNLESQLKEQNA---- 316
Query: 117 LNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKIT 176
L+ L VLEE+ +D LG L S + + A LN+ G RY + IT
Sbjct: 317 LDKLEEVLEEVPRVRED--LGYPPLVTPTSQIVGTQAVLNVL---TGERY------KVIT 365
Query: 177 KQ 178
K+
Sbjct: 366 KE 367
>gnl|CDD|226112 COG3584, COG3584, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 109
Score = 28.9 bits (65), Expect = 3.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 626 VKLVNDVG-EVVNTDPEVNSYLKVVFVPNYNVSVAE 660
+ L + G +V+ DP V V+VP Y V+VAE
Sbjct: 41 IDLRRNPGYKVIAVDPSVIPLGSRVYVPGYGVAVAE 76
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 30.4 bits (69), Expect = 3.6
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 742 FEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQ 801
EEAK + +G + Y Y P E G + Y YLE ++R K
Sbjct: 217 IEEAKLAVETGYWPLYRYEPGKAEEEKGKDIPIGIF----YPVEEYLEYEERFKHLTKSN 272
Query: 802 KKWLK 806
+ ++
Sbjct: 273 PELIQ 277
>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate
cytidylyltransferase. Glycerol-3-phosphate
cytidylyltransferase,(CDP-glycerol pyrophosphorylase).
Glycerol-3-phosphate cytidyltransferase acts in pathways
of teichoic acid biosynthesis. Teichoic acids are
substituted polymers, linked by phosphodiester bonds, of
glycerol, ribitol, etc. An example is poly(glycerol
phosphate), the major teichoic acid of the Bacillus
subtilis cell wall. Most, but not all, species encoding
proteins in this family are Gram-positive bacteria. A
closely related protein assigned a different function
experimentally is a human ethanolamine-phosphate
cytidylyltransferase.
Length = 129
Score = 29.0 bits (65), Expect = 4.2
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 612 GGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSV 658
G KA Y I++ + V V+ PE N K+ + YNV V
Sbjct: 45 GKKAVIPYEQRAEILESIRYVDLVI---PETNWEQKIEDIKKYNVDV 88
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 30.1 bits (68), Expect = 5.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 635 VVNTDPEVNSYL----KVVFVPNYNVSVAELL 662
+V+TD EVN + FVP Y S+ EL+
Sbjct: 58 IVSTDAEVNKVVLQSDGNAFVPAYPKSLTELM 89
>gnl|CDD|190562 pfam03201, HMD, H2-forming N5,N10-methylene-tetrahydromethanopterin
dehydrogenase.
Length = 98
Score = 28.1 bits (63), Expect = 5.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 674 TAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEI 709
+ ME SG M+ +L+ ++G+ D N QEI
Sbjct: 52 ASLMETSGIDGMEEALDPEALLGSADSMNFGELQEI 87
>gnl|CDD|218748 pfam05787, DUF839, Bacterial protein of unknown function (DUF839).
This family consists of several bacterial proteins of
unknown function that contain a predicted beta-propeller
repeats.
Length = 515
Score = 30.2 bits (68), Expect = 5.4
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 30/158 (18%)
Query: 606 PRTIMIGGKAFATYTNAKRIVKLV-------NDVGEVVNTDPEVNSYLKV-----VFVPN 653
P T GG+ + TN + K+ N G++V DP + +F+
Sbjct: 350 PVTGFGGGEVYFVLTNNGKRSKIDSANPRAKNGYGQIVRYDPATRDHTATKFTWDLFLVA 409
Query: 654 YNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEEN 713
+ + A++ G ++AG + N+ F G L I T DG
Sbjct: 410 GDPTDAKVFSAG-------TSAGNDFESPDNITFDPAGRLWICT-DGNGS---------- 451
Query: 714 FFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRS 751
R + +G+ P E K F+
Sbjct: 452 TLGVTPEGNVYNLARNDGNNGMLTEGPIRGEVKLFLTG 489
>gnl|CDD|226614 COG4129, COG4129, Predicted membrane protein [Function unknown].
Length = 332
Score = 29.6 bits (67), Expect = 6.8
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 78 HFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 133
HF K +Y SM Q R L + L+ + ++ N L +L+E+ EQ +
Sbjct: 210 HFFKSSDYYWHYFSMRRRQVRILRRMLRVLNSLHRTSNLSNLLADLLQELLEQLLE 265
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 29.3 bits (66), Expect = 7.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 76 YHHFNKVDPKQTY------YLSMEFLQGRTLTNAI 104
Y H N V+ +Y ++ MEFL+G LT+ +
Sbjct: 73 YQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIV 107
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 29.1 bits (65), Expect = 7.7
Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 28/149 (18%)
Query: 569 QVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKL 628
V R+ K + I + LKE R I G + L
Sbjct: 109 FVGRLAPEK----GLDDLIEAFALLKE-----RGPDLKLVIAGDGPEREYLEELLAALLL 159
Query: 629 VNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFS 688
++ V + DPE + LL+ +++ + + E G ++
Sbjct: 160 LDRVIFLGGLDPE---------------ELLALLLAAADVF--VLPSLREGFGLVVLEAM 202
Query: 689 LNGCLIIGTLDGANVEIRQEIGEENFFLF 717
G +I T G EI L
Sbjct: 203 ACGLPVIATDVGGPPEI--VEDGLTGLLV 229
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 29.3 bits (67), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 587 IYRYKKLKEMSPQERKKTT--PRTI 609
I R+K L EM+P + +TT P T
Sbjct: 565 IQRFKGLGEMNPDQLWETTMDPETR 589
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.400
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 43,494,101
Number of extensions: 4316574
Number of successful extensions: 3783
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3724
Number of HSP's successfully gapped: 37
Length of query: 840
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 735
Effective length of database: 6,280,432
Effective search space: 4616117520
Effective search space used: 4616117520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.9 bits)