Query 003187
Match_columns 840
No_of_seqs 381 out of 1804
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 18:42:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1331 Highly conserved prote 100.0 2E-169 5E-174 1439.2 68.2 656 100-835 5-666 (667)
2 KOG2244 Highly conserved prote 100.0 4E-168 1E-172 1365.2 58.7 687 101-833 75-785 (786)
3 PF03190 Thioredox_DsbH: Prote 100.0 1.2E-55 2.7E-60 433.9 14.7 163 102-264 1-163 (163)
4 cd02955 SSP411 TRX domain, SSP 100.0 1.6E-31 3.4E-36 254.7 14.3 124 124-247 1-124 (124)
5 cd00249 AGE AGE domain; N-acyl 99.9 7.2E-25 1.6E-29 245.7 27.1 258 342-721 17-275 (384)
6 cd00249 AGE AGE domain; N-acyl 99.9 3.9E-22 8.4E-27 223.7 33.5 307 284-721 15-338 (384)
7 cd02960 AGR Anterior Gradient 99.8 5.8E-20 1.2E-24 175.8 10.0 91 119-219 4-95 (130)
8 PF13899 Thioredoxin_7: Thiore 99.8 4.1E-19 8.8E-24 157.2 7.7 82 122-212 1-82 (82)
9 PF07221 GlcNAc_2-epim: N-acyl 99.8 1.5E-17 3.3E-22 184.9 17.5 237 360-718 1-246 (346)
10 cd02958 UAS UAS family; UAS is 99.7 2.7E-17 5.8E-22 154.4 9.7 105 126-242 5-111 (114)
11 PF07221 GlcNAc_2-epim: N-acyl 99.7 2.5E-17 5.4E-22 183.1 10.4 273 334-669 38-330 (346)
12 cd02959 ERp19 Endoplasmic reti 99.7 4.4E-17 9.5E-22 154.2 9.4 112 119-243 1-114 (117)
13 cd02951 SoxW SoxW family; SoxW 99.6 2.1E-15 4.4E-20 143.5 10.5 109 127-242 2-119 (125)
14 smart00594 UAS UAS domain. 99.5 1.4E-14 3.1E-19 137.9 9.2 89 120-214 9-97 (122)
15 COG2942 N-acyl-D-glucosamine 2 99.5 8.6E-13 1.9E-17 145.2 23.4 296 348-669 23-358 (388)
16 cd02953 DsbDgamma DsbD gamma f 99.5 1.6E-14 3.4E-19 132.9 7.6 95 128-226 1-97 (104)
17 PF03663 Glyco_hydro_76: Glyco 99.5 2.7E-12 5.8E-17 144.6 23.1 274 286-699 7-299 (370)
18 COG1331 Highly conserved prote 99.4 7.8E-12 1.7E-16 145.6 21.9 158 375-650 405-571 (667)
19 PRK00293 dipZ thiol:disulfide 99.4 4.2E-13 9E-18 158.7 11.5 113 119-242 450-570 (571)
20 COG4232 Thiol:disulfide interc 99.4 1.7E-12 3.6E-17 149.1 9.6 94 121-219 454-550 (569)
21 PF13098 Thioredoxin_2: Thiore 99.3 7.5E-13 1.6E-17 122.9 1.3 98 134-238 1-112 (112)
22 cd02991 UAS_ETEA UAS family, E 99.2 4.2E-11 9E-16 113.4 9.4 101 127-243 6-114 (116)
23 PF03663 Glyco_hydro_76: Glyco 99.2 1.3E-09 2.8E-14 123.0 19.6 217 380-720 36-256 (370)
24 COG2143 Thioredoxin-related pr 99.2 1.8E-10 3.9E-15 111.5 10.7 117 128-251 32-158 (182)
25 cd02950 TxlA TRX-like protein 99.1 4E-10 8.7E-15 110.3 8.2 84 130-224 12-98 (142)
26 cd02954 DIM1 Dim1 family; Dim1 99.0 1.6E-09 3.5E-14 102.0 9.3 79 129-219 3-83 (114)
27 KOG2244 Highly conserved prote 98.9 9.2E-09 2E-13 115.6 13.2 195 335-650 473-679 (786)
28 cd02949 TRX_NTR TRX domain, no 98.9 2.6E-09 5.7E-14 97.2 7.2 78 135-224 10-88 (97)
29 PRK10996 thioredoxin 2; Provis 98.9 4.7E-09 1E-13 102.4 9.2 86 127-224 41-127 (139)
30 PLN00410 U5 snRNP protein, DIM 98.9 2.9E-09 6.3E-14 104.0 7.3 82 128-222 15-97 (142)
31 cd04791 LanC_SerThrkinase Lant 98.9 5.5E-08 1.2E-12 106.8 18.1 159 534-726 80-238 (321)
32 cd02956 ybbN ybbN protein fami 98.9 5.9E-09 1.3E-13 94.1 7.5 72 136-219 10-81 (96)
33 cd02948 TRX_NDPK TRX domain, T 98.8 1.6E-08 3.4E-13 93.2 8.5 80 128-220 7-87 (102)
34 cd02984 TRX_PICOT TRX domain, 98.8 1.9E-08 4.2E-13 90.7 7.9 78 130-219 4-83 (97)
35 cd03000 PDI_a_TMX3 PDIa family 98.7 2E-08 4.4E-13 92.5 7.2 74 126-211 4-80 (104)
36 cd02986 DLP Dim1 family, Dim1- 98.7 1.4E-08 3E-13 95.3 5.9 75 128-216 6-80 (114)
37 cd02985 TRX_CDSP32 TRX family, 98.7 3.7E-08 7.9E-13 91.0 8.4 73 137-219 14-86 (103)
38 TIGR01126 pdi_dom protein disu 98.7 4.5E-08 9.7E-13 88.5 8.7 78 128-216 3-82 (102)
39 PF07470 Glyco_hydro_88: Glyco 98.7 7.9E-07 1.7E-11 98.9 19.2 152 541-720 127-287 (336)
40 COG2942 N-acyl-D-glucosamine 2 98.7 2.1E-06 4.5E-11 95.4 22.0 153 536-716 114-271 (388)
41 cd03003 PDI_a_ERdj5_N PDIa fam 98.7 5.1E-08 1.1E-12 89.1 7.6 79 128-218 8-86 (101)
42 cd02993 PDI_a_APS_reductase PD 98.7 7.2E-08 1.6E-12 89.8 8.5 78 129-216 12-91 (109)
43 PHA02278 thioredoxin-like prot 98.7 5.8E-08 1.3E-12 90.1 7.4 84 129-224 5-93 (103)
44 cd02997 PDI_a_PDIR PDIa family 98.7 8.2E-08 1.8E-12 87.4 8.3 79 128-218 7-89 (104)
45 KOG0910 Thioredoxin-like prote 98.6 7E-08 1.5E-12 94.2 7.7 93 118-226 42-138 (150)
46 cd02963 TRX_DnaJ TRX domain, D 98.6 5.5E-08 1.2E-12 91.0 6.0 73 135-219 21-94 (111)
47 cd02961 PDI_a_family Protein D 98.6 1.6E-07 3.4E-12 83.8 8.5 79 128-217 5-85 (101)
48 TIGR01068 thioredoxin thioredo 98.6 2.3E-07 5E-12 83.5 9.3 78 130-219 5-83 (101)
49 cd03004 PDI_a_ERdj5_C PDIa fam 98.6 1.5E-07 3.2E-12 86.3 8.2 80 129-219 9-89 (104)
50 cd02996 PDI_a_ERp44 PDIa famil 98.6 1.3E-07 2.7E-12 87.7 7.6 77 128-216 8-90 (108)
51 cd02962 TMX2 TMX2 family; comp 98.6 1.2E-07 2.6E-12 94.1 7.9 112 128-246 35-149 (152)
52 cd03006 PDI_a_EFP1_N PDIa fami 98.5 1.7E-07 3.6E-12 88.5 6.8 77 128-216 16-96 (113)
53 PTZ00051 thioredoxin; Provisio 98.5 2.7E-07 5.9E-12 83.5 7.5 79 128-219 8-86 (98)
54 PRK09381 trxA thioredoxin; Pro 98.5 3.4E-07 7.3E-12 84.8 8.1 73 135-219 18-90 (109)
55 cd02947 TRX_family TRX family; 98.5 2.2E-07 4.7E-12 81.1 6.1 76 131-219 3-78 (93)
56 cd03002 PDI_a_MPD1_like PDI fa 98.5 3.9E-07 8.5E-12 84.0 7.8 69 135-214 15-85 (109)
57 KOG0907 Thioredoxin [Posttrans 98.5 2.3E-07 5.1E-12 86.5 6.3 77 128-217 11-87 (106)
58 PF00085 Thioredoxin: Thioredo 98.5 2.5E-07 5.4E-12 83.7 5.9 75 130-215 8-83 (103)
59 cd02999 PDI_a_ERp44_like PDIa 98.5 3.1E-07 6.6E-12 84.6 6.5 68 134-213 14-82 (100)
60 cd03005 PDI_a_ERp46 PDIa famil 98.4 7.5E-07 1.6E-11 80.9 7.8 77 128-217 7-86 (102)
61 cd02998 PDI_a_ERp38 PDIa famil 98.4 6.7E-07 1.5E-11 81.3 7.2 72 134-216 14-88 (105)
62 cd02995 PDI_a_PDI_a'_C PDIa fa 98.4 8.6E-07 1.9E-11 80.5 7.8 73 130-214 9-84 (104)
63 TIGR00385 dsbE periplasmic pro 98.4 1.4E-06 2.9E-11 88.1 9.7 84 135-224 60-159 (173)
64 cd02989 Phd_like_TxnDC9 Phosdu 98.4 9.6E-07 2.1E-11 83.2 7.5 79 128-219 12-90 (113)
65 cd02994 PDI_a_TMX PDIa family, 98.3 1.1E-06 2.5E-11 80.0 7.5 74 129-216 9-83 (101)
66 cd02975 PfPDO_like_N Pyrococcu 98.3 1.3E-06 2.9E-11 82.1 8.0 96 129-243 13-111 (113)
67 cd03065 PDI_b_Calsequestrin_N 98.3 1.1E-06 2.3E-11 83.9 6.9 96 129-241 17-118 (120)
68 PTZ00443 Thioredoxin domain-co 98.3 6.7E-06 1.5E-10 86.6 12.5 70 137-218 51-120 (224)
69 cd02952 TRP14_like Human TRX-r 98.3 2.1E-06 4.7E-11 81.7 7.8 72 137-215 20-102 (119)
70 cd04791 LanC_SerThrkinase Lant 98.3 6.8E-05 1.5E-09 82.4 20.8 133 541-718 142-274 (321)
71 cd03001 PDI_a_P5 PDIa family, 98.3 3.4E-06 7.5E-11 76.6 8.5 77 128-215 7-84 (103)
72 PRK15412 thiol:disulfide inter 98.3 3.3E-06 7.2E-11 86.3 9.2 79 136-220 66-159 (185)
73 cd03009 TryX_like_TryX_NRX Try 98.2 4.9E-06 1.1E-10 79.6 9.4 81 135-219 15-115 (131)
74 COG3118 Thioredoxin domain-con 98.2 3.3E-06 7.2E-11 90.7 8.2 92 136-244 41-132 (304)
75 PF07944 DUF1680: Putative gly 98.2 0.00019 4.1E-09 84.9 23.8 273 294-714 39-331 (520)
76 cd03008 TryX_like_RdCVF Trypar 98.2 6.1E-06 1.3E-10 81.4 9.2 83 134-219 21-128 (146)
77 cd03010 TlpA_like_DsbE TlpA-li 98.2 4.1E-06 9E-11 79.6 7.3 89 131-225 18-123 (127)
78 TIGR01295 PedC_BrcD bacterioci 98.1 6.7E-06 1.5E-10 78.6 7.7 88 128-219 13-105 (122)
79 cd02992 PDI_a_QSOX PDIa family 98.1 7.5E-06 1.6E-10 77.2 7.6 78 129-217 9-92 (114)
80 cd02957 Phd_like Phosducin (Ph 98.1 8.5E-06 1.8E-10 76.4 7.8 68 138-219 24-91 (113)
81 PRK14018 trifunctional thiored 98.1 4.9E-06 1.1E-10 97.2 7.1 85 137-225 55-162 (521)
82 cd02965 HyaE HyaE family; HyaE 98.1 5.9E-06 1.3E-10 77.6 6.3 87 121-219 10-98 (111)
83 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 4.6E-06 9.9E-11 78.5 5.2 88 130-225 12-115 (123)
84 PTZ00102 disulphide isomerase; 98.1 5E-06 1.1E-10 96.4 6.7 77 129-216 365-444 (477)
85 PF13905 Thioredoxin_8: Thiore 98.1 1.3E-05 2.8E-10 72.1 7.9 76 138-216 1-95 (95)
86 cd02964 TryX_like_family Trypa 98.1 1.2E-05 2.6E-10 77.3 8.0 85 132-219 11-115 (132)
87 cd02967 mauD Methylamine utili 98.0 1.6E-05 3.4E-10 73.9 8.4 80 137-220 20-112 (114)
88 cd02966 TlpA_like_family TlpA- 98.0 7.4E-06 1.6E-10 74.3 5.7 87 130-219 11-113 (116)
89 PHA02125 thioredoxin-like prot 98.0 1.3E-05 2.9E-10 69.7 6.9 64 142-226 2-65 (75)
90 PTZ00102 disulphide isomerase; 98.0 9.9E-06 2.2E-10 94.0 7.6 78 128-216 39-119 (477)
91 TIGR01130 ER_PDI_fam protein d 98.0 1.2E-05 2.6E-10 92.5 8.1 76 128-214 8-86 (462)
92 TIGR00411 redox_disulf_1 small 98.0 1.6E-05 3.5E-10 69.3 6.2 61 142-216 3-63 (82)
93 COG4225 Predicted unsaturated 97.9 0.0015 3.2E-08 71.7 22.1 257 307-724 34-307 (357)
94 TIGR02738 TrbB type-F conjugat 97.9 2.4E-05 5.2E-10 77.9 6.7 80 133-218 45-133 (153)
95 cd02987 Phd_like_Phd Phosducin 97.8 4.7E-05 1E-09 77.4 8.3 68 138-219 83-150 (175)
96 PLN02309 5'-adenylylsulfate re 97.8 2.8E-05 6.1E-10 89.7 7.3 72 133-214 360-433 (457)
97 TIGR00424 APS_reduc 5'-adenyly 97.8 4.7E-05 1E-09 88.0 8.8 69 135-214 368-439 (463)
98 PRK03147 thiol-disulfide oxido 97.8 6.7E-05 1.5E-09 74.9 8.8 84 133-219 56-154 (173)
99 PF07470 Glyco_hydro_88: Glyco 97.8 0.0013 2.7E-08 73.4 19.7 150 548-724 77-227 (336)
100 cd02982 PDI_b'_family Protein 97.8 4.6E-05 9.9E-10 69.4 6.3 65 138-213 12-78 (103)
101 TIGR02740 TraF-like TraF-like 97.7 9.5E-05 2.1E-09 80.3 8.8 78 135-217 163-243 (271)
102 KOG0908 Thioredoxin-like prote 97.7 3.4E-05 7.3E-10 80.8 4.9 67 133-213 16-84 (288)
103 TIGR00412 redox_disulf_2 small 97.7 4.9E-05 1.1E-09 66.5 5.0 65 143-225 3-67 (76)
104 TIGR01626 ytfJ_HI0045 conserve 97.7 0.00013 2.8E-09 74.7 8.6 96 119-225 45-169 (184)
105 cd02973 TRX_GRX_like Thioredox 97.7 0.0001 2.2E-09 62.1 6.1 63 142-219 3-65 (67)
106 PF06662 C5-epim_C: D-glucuron 97.6 0.0019 4.1E-08 66.4 16.2 144 540-712 32-186 (189)
107 cd03026 AhpF_NTD_C TRX-GRX-lik 97.6 0.00011 2.5E-09 66.3 6.5 74 132-220 5-79 (89)
108 TIGR02187 GlrX_arch Glutaredox 97.6 0.00015 3.2E-09 76.0 8.1 77 128-217 122-199 (215)
109 cd04792 LanM-like LanM-like pr 97.6 0.0063 1.4E-07 76.0 23.6 251 366-717 476-734 (825)
110 cd03012 TlpA_like_DipZ_like Tl 97.6 0.00014 3.1E-09 69.2 7.0 87 130-219 15-121 (126)
111 cd04434 LanC_like LanC-like pr 97.6 0.018 4E-07 63.1 24.3 158 536-722 98-256 (343)
112 TIGR02661 MauD methylamine deh 97.5 0.00021 4.6E-09 73.4 7.8 78 136-219 72-162 (189)
113 PLN02919 haloacid dehalogenase 97.5 0.00016 3.5E-09 91.9 8.3 101 137-247 419-541 (1057)
114 cd04793 LanC LanC is the cycla 97.5 0.019 4.1E-07 65.1 23.8 142 544-723 178-331 (382)
115 TIGR02187 GlrX_arch Glutaredox 97.5 0.0002 4.3E-09 75.0 6.3 70 136-217 18-90 (215)
116 COG3533 Uncharacterized protei 97.4 0.013 2.9E-07 67.1 19.9 174 334-649 84-263 (589)
117 PF07944 DUF1680: Putative gly 97.3 0.0024 5.2E-08 75.7 14.4 135 540-717 62-207 (520)
118 TIGR01130 ER_PDI_fam protein d 97.3 0.0004 8.6E-09 79.9 7.6 68 135-215 361-431 (462)
119 PF08534 Redoxin: Redoxin; In 97.3 0.00066 1.4E-08 66.0 7.5 85 132-220 22-131 (146)
120 COG4225 Predicted unsaturated 97.1 0.0091 2E-07 65.7 14.6 148 573-731 98-251 (357)
121 cd03007 PDI_a_ERp29_N PDIa fam 97.1 0.00091 2E-08 63.5 6.1 71 128-213 8-90 (116)
122 cd02969 PRX_like1 Peroxiredoxi 97.0 0.0062 1.4E-07 61.1 11.6 81 137-220 24-126 (171)
123 cd02990 UAS_FAF1 UAS family, F 97.0 0.0042 9.1E-08 60.6 9.6 88 127-215 6-108 (136)
124 PTZ00062 glutaredoxin; Provisi 96.9 0.0016 3.5E-08 67.8 6.7 71 128-219 6-77 (204)
125 cd01659 TRX_superfamily Thiore 96.9 0.0012 2.5E-08 52.1 4.5 63 142-213 1-63 (69)
126 KOG2501 Thioredoxin, nucleored 96.9 0.0032 7E-08 62.5 7.8 87 129-219 24-131 (157)
127 PRK13728 conjugal transfer pro 96.9 0.002 4.4E-08 65.8 6.5 70 142-218 73-151 (181)
128 PF00759 Glyco_hydro_9: Glycos 96.9 0.0037 8E-08 72.4 9.5 92 537-646 153-247 (444)
129 PLN02266 endoglucanase 96.9 0.047 1E-06 64.2 18.4 182 356-643 89-281 (510)
130 PF06662 C5-epim_C: D-glucuron 96.8 0.027 5.7E-07 58.1 14.4 45 380-426 30-74 (189)
131 PLN02399 phospholipid hydroper 96.8 0.0036 7.8E-08 66.7 7.7 22 134-155 95-116 (236)
132 cd04792 LanM-like LanM-like pr 96.7 0.76 1.7E-05 57.6 29.0 139 540-723 645-785 (825)
133 KOG0190 Protein disulfide isom 96.7 0.0022 4.8E-08 74.3 6.0 101 103-217 344-454 (493)
134 PTZ00470 glycoside hydrolase f 96.7 0.16 3.5E-06 60.1 21.4 290 369-731 148-466 (522)
135 PLN02171 endoglucanase 96.7 0.066 1.4E-06 64.5 18.4 86 539-644 177-267 (629)
136 cd03017 PRX_BCP Peroxiredoxin 96.7 0.007 1.5E-07 58.1 8.3 85 137-225 22-132 (140)
137 KOG0190 Protein disulfide isom 96.7 0.0025 5.3E-08 73.9 5.9 74 128-212 32-108 (493)
138 cd02988 Phd_like_VIAF Phosduci 96.6 0.0029 6.4E-08 65.3 5.9 66 138-219 102-167 (192)
139 KOG4277 Uncharacterized conser 96.6 0.0019 4.1E-08 69.3 4.4 82 125-218 31-115 (468)
140 PLN02345 endoglucanase 96.6 0.068 1.5E-06 62.4 17.4 83 540-640 144-228 (469)
141 PLN02308 endoglucanase 96.6 0.11 2.3E-06 61.1 19.0 85 540-642 174-262 (492)
142 PLN02340 endoglucanase 96.6 0.052 1.1E-06 65.2 16.7 188 356-644 73-266 (614)
143 KOG0191 Thioredoxin/protein di 96.6 0.0034 7.4E-08 71.4 6.7 74 132-216 41-114 (383)
144 COG3533 Uncharacterized protei 96.6 0.092 2E-06 60.5 17.6 124 541-718 134-261 (589)
145 PTZ00056 glutathione peroxidas 96.6 0.0066 1.4E-07 63.0 8.0 19 137-155 38-56 (199)
146 PRK09437 bcp thioredoxin-depen 96.6 0.011 2.4E-07 58.1 9.1 84 137-225 29-142 (154)
147 cd02889 SQCY Squalene cyclase 96.5 0.14 2.9E-06 57.1 18.8 122 287-425 3-138 (348)
148 PLN00119 endoglucanase 96.5 0.1 2.2E-06 61.1 18.0 85 540-641 179-264 (489)
149 PLN02420 endoglucanase 96.5 0.13 2.7E-06 61.0 18.8 89 540-643 189-277 (525)
150 PLN03009 cellulase 96.5 0.079 1.7E-06 62.4 17.0 86 541-642 176-265 (495)
151 cd04434 LanC_like LanC-like pr 96.5 1.8 3.9E-05 47.4 26.8 133 543-717 164-298 (343)
152 TIGR02180 GRX_euk Glutaredoxin 96.4 0.0051 1.1E-07 53.7 5.0 66 143-219 2-67 (84)
153 COG4403 LcnDR2 Lantibiotic mod 96.3 0.26 5.7E-06 60.3 20.0 224 334-652 595-831 (963)
154 KOG2787 Lanthionine synthetase 96.3 0.017 3.7E-07 62.9 9.1 77 543-649 285-361 (403)
155 PLN02909 Endoglucanase 96.3 0.2 4.3E-06 58.8 18.5 80 540-641 182-264 (486)
156 PLN02613 endoglucanase 96.2 0.2 4.4E-06 58.9 18.4 82 538-641 172-256 (498)
157 PLN02412 probable glutathione 96.2 0.012 2.6E-07 59.2 7.1 19 137-155 28-46 (167)
158 KOG2507 Ubiquitin regulatory p 96.1 0.028 6.1E-07 63.1 10.1 110 122-246 2-112 (506)
159 TIGR02196 GlrX_YruB Glutaredox 96.1 0.022 4.9E-07 47.7 7.1 61 143-219 3-63 (74)
160 TIGR02540 gpx7 putative glutat 96.0 0.026 5.7E-07 55.6 8.3 24 132-155 16-39 (153)
161 PF14595 Thioredoxin_9: Thiore 96.0 0.0055 1.2E-07 59.4 3.2 87 127-224 29-118 (129)
162 cd04794 euk_LANCL eukaryotic L 95.9 2.9 6.2E-05 46.9 25.0 137 543-722 170-307 (343)
163 cd04794 euk_LANCL eukaryotic L 95.9 1 2.2E-05 50.5 21.4 96 610-717 161-256 (343)
164 PF00578 AhpC-TSA: AhpC/TSA fa 95.8 0.022 4.8E-07 53.2 6.6 21 137-157 24-45 (124)
165 PF05147 LANC_like: Lanthionin 95.8 0.012 2.5E-07 65.3 5.3 249 379-719 7-262 (355)
166 cd02968 SCO SCO (an acronym fo 95.8 0.025 5.4E-07 54.3 6.9 22 137-158 21-43 (142)
167 PRK10382 alkyl hydroperoxide r 95.7 0.054 1.2E-06 55.8 9.4 98 137-242 30-153 (187)
168 cd00340 GSH_Peroxidase Glutath 95.7 0.018 3.9E-07 56.8 5.6 22 134-156 18-39 (152)
169 TIGR03137 AhpC peroxiredoxin. 95.6 0.077 1.7E-06 54.4 10.0 94 137-242 30-153 (187)
170 PTZ00470 glycoside hydrolase f 95.5 0.074 1.6E-06 62.9 10.9 101 614-719 155-256 (522)
171 cd03015 PRX_Typ2cys Peroxiredo 95.5 0.084 1.8E-06 53.2 9.8 82 134-220 25-136 (173)
172 cd02976 NrdH NrdH-redoxin (Nrd 95.4 0.049 1.1E-06 45.6 6.7 62 142-219 2-63 (73)
173 PF01532 Glyco_hydro_47: Glyco 95.4 0.12 2.6E-06 60.4 11.9 167 536-726 75-252 (452)
174 PLN02175 endoglucanase 95.4 0.52 1.1E-05 55.3 17.0 87 540-641 171-258 (484)
175 PRK00522 tpx lipid hydroperoxi 95.3 0.059 1.3E-06 54.2 7.8 98 137-242 43-166 (167)
176 cd03419 GRX_GRXh_1_2_like Glut 95.3 0.085 1.8E-06 45.8 7.9 64 143-219 3-66 (82)
177 cd03014 PRX_Atyp2cys Peroxired 95.2 0.048 1E-06 52.8 6.7 93 137-238 25-141 (143)
178 PF06917 Pectate_lyase_2: Peri 95.2 6 0.00013 46.2 24.0 129 573-720 327-472 (557)
179 COG0526 TrxA Thiol-disulfide i 95.1 0.052 1.1E-06 48.0 6.2 60 138-209 32-95 (127)
180 PTZ00256 glutathione peroxidas 95.0 0.072 1.6E-06 54.4 7.7 21 135-155 37-58 (183)
181 KOG1752 Glutaredoxin and relat 94.9 0.056 1.2E-06 50.5 6.0 67 131-209 7-73 (104)
182 TIGR02200 GlrX_actino Glutared 94.9 0.068 1.5E-06 45.6 6.0 63 142-219 2-65 (77)
183 KOG0191 Thioredoxin/protein di 94.8 0.027 5.8E-07 64.2 4.1 71 134-215 158-230 (383)
184 cd04793 LanC LanC is the cycla 94.5 1.7 3.7E-05 49.4 18.0 84 541-651 247-330 (382)
185 cd02971 PRX_family Peroxiredox 94.4 0.093 2E-06 50.2 6.4 22 137-158 21-43 (140)
186 TIGR02189 GlrX-like_plant Glut 94.3 0.15 3.3E-06 47.0 7.2 69 135-218 5-73 (99)
187 PRK11657 dsbG disulfide isomer 94.3 0.15 3.2E-06 55.0 8.2 30 130-159 109-138 (251)
188 PF01532 Glyco_hydro_47: Glyco 94.2 0.54 1.2E-05 55.0 13.4 232 371-727 72-321 (452)
189 PRK11509 hydrogenase-1 operon 94.1 0.081 1.8E-06 51.5 5.3 52 164-224 59-112 (132)
190 TIGR02190 GlrX-dom Glutaredoxi 94.0 0.11 2.3E-06 45.6 5.4 67 134-219 4-70 (79)
191 cd03018 PRX_AhpE_like Peroxire 94.0 0.14 3E-06 49.6 6.8 79 137-219 26-129 (149)
192 PRK15000 peroxidase; Provision 93.9 0.16 3.5E-06 52.8 7.5 97 137-242 33-159 (200)
193 cd02896 complement_C3_C4_C5 Pr 93.7 6.4 0.00014 43.4 19.9 77 335-425 48-124 (297)
194 cd02066 GRX_family Glutaredoxi 93.7 0.23 4.9E-06 41.2 6.7 60 143-219 3-63 (72)
195 cd02892 SQCY_1 Squalene cyclas 93.7 15 0.00033 44.9 24.9 60 358-425 359-421 (634)
196 PF00462 Glutaredoxin: Glutare 93.6 0.23 5E-06 40.9 6.5 53 143-209 2-55 (60)
197 cd02970 PRX_like2 Peroxiredoxi 93.5 0.34 7.3E-06 46.6 8.5 44 137-183 22-67 (149)
198 PRK13190 putative peroxiredoxi 93.2 0.19 4.1E-06 52.3 6.6 36 203-242 116-151 (202)
199 TIGR03143 AhpF_homolog putativ 93.2 0.19 4.1E-06 60.2 7.4 79 127-220 464-543 (555)
200 PRK15317 alkyl hydroperoxide r 93.1 0.31 6.8E-06 57.8 9.1 97 105-219 82-182 (517)
201 COG4833 Predicted glycosyl hyd 93.1 1.1 2.3E-05 48.3 11.7 155 522-700 111-283 (377)
202 TIGR00365 monothiol glutaredox 93.0 0.31 6.8E-06 44.7 6.9 73 129-218 3-79 (97)
203 PHA03050 glutaredoxin; Provisi 92.9 0.33 7.2E-06 45.6 7.0 70 135-217 10-80 (108)
204 PRK11200 grxA glutaredoxin 1; 92.8 0.61 1.3E-05 41.3 8.3 66 142-218 3-70 (85)
205 PF06110 DUF953: Eukaryotic pr 92.7 0.12 2.6E-06 49.5 3.7 80 128-215 9-101 (119)
206 PTZ00253 tryparedoxin peroxida 92.6 0.24 5.1E-06 51.3 6.2 97 137-242 35-161 (199)
207 PF06917 Pectate_lyase_2: Peri 92.5 0.31 6.7E-06 56.3 7.4 92 543-661 389-481 (557)
208 PF02966 DIM1: Mitosis protein 92.3 0.74 1.6E-05 44.6 8.6 96 135-242 17-117 (133)
209 cd03027 GRX_DEP Glutaredoxin ( 92.1 0.38 8.2E-06 41.3 5.9 53 143-209 4-57 (73)
210 PRK10877 protein disulfide iso 92.0 0.53 1.2E-05 50.1 8.2 25 135-159 104-128 (232)
211 cd02892 SQCY_1 Squalene cyclas 91.7 9.6 0.00021 46.6 19.5 114 281-421 234-348 (634)
212 cd03028 GRX_PICOT_like Glutare 91.6 0.71 1.5E-05 41.6 7.4 64 138-217 7-74 (90)
213 PTZ00137 2-Cys peroxiredoxin; 91.5 1.2 2.6E-05 48.4 10.3 97 137-242 97-222 (261)
214 PF13728 TraF: F plasmid trans 91.4 0.74 1.6E-05 48.5 8.4 80 129-217 113-197 (215)
215 PRK13599 putative peroxiredoxi 91.3 0.54 1.2E-05 49.5 7.2 37 203-243 118-154 (215)
216 PRK10638 glutaredoxin 3; Provi 91.3 0.55 1.2E-05 41.4 6.2 61 143-219 5-65 (83)
217 PLN02171 endoglucanase 91.2 12 0.00025 45.7 19.1 112 299-414 74-216 (629)
218 KOG0912 Thiol-disulfide isomer 91.2 0.49 1.1E-05 51.7 6.7 64 136-208 11-77 (375)
219 KOG3414 Component of the U4/U6 91.1 0.58 1.3E-05 44.9 6.3 81 112-212 3-86 (142)
220 TIGR03140 AhpF alkyl hydropero 90.9 0.87 1.9E-05 54.0 9.2 78 127-219 105-183 (515)
221 TIGR01577 oligosac_amyl oligos 90.6 5.3 0.00011 48.7 15.8 145 540-719 300-455 (616)
222 TIGR01507 hopene_cyclase squal 90.0 56 0.0012 40.1 26.6 60 358-425 365-424 (635)
223 KOG2787 Lanthionine synthetase 90.0 37 0.00079 37.9 21.1 112 573-712 241-353 (403)
224 cd03418 GRX_GRXb_1_3_like Glut 89.9 1 2.2E-05 38.3 6.5 60 143-218 3-63 (75)
225 TIGR02181 GRX_bact Glutaredoxi 89.8 0.57 1.2E-05 40.6 4.9 58 144-217 3-60 (79)
226 TIGR02194 GlrX_NrdH Glutaredox 89.8 0.86 1.9E-05 39.0 5.9 52 144-209 3-54 (72)
227 PF13192 Thioredoxin_3: Thiore 88.9 0.48 1E-05 41.2 3.8 58 145-220 5-63 (76)
228 TIGR02183 GRXA Glutaredoxin, G 88.8 1.2 2.7E-05 39.7 6.4 65 143-218 3-69 (86)
229 cd00688 ISOPREN_C2_like This g 88.8 34 0.00073 35.9 21.0 128 281-423 50-179 (300)
230 PRK10606 btuE putative glutath 88.8 1.1 2.4E-05 46.0 6.9 77 132-215 19-102 (183)
231 cd03016 PRX_1cys Peroxiredoxin 88.7 1.5 3.3E-05 45.5 8.0 35 204-242 117-151 (203)
232 PRK13191 putative peroxiredoxi 88.5 2.9 6.4E-05 44.0 10.0 100 137-243 32-159 (215)
233 PF06202 GDE_C: Amylo-alpha-1, 88.5 40 0.00086 38.5 19.9 113 316-431 91-225 (370)
234 COG4403 LcnDR2 Lantibiotic mod 87.9 13 0.00027 46.4 15.7 140 534-723 690-831 (963)
235 PF05147 LANC_like: Lanthionin 87.7 2.1 4.6E-05 47.3 8.9 134 541-717 170-306 (355)
236 PLN02993 lupeol synthase 87.3 5.3 0.00011 49.6 12.5 83 336-425 513-611 (763)
237 PRK10329 glutaredoxin-like pro 87.2 1.7 3.7E-05 38.5 6.2 52 143-209 4-56 (81)
238 KOG2430 Glycosyl hydrolase, fa 87.1 5.9 0.00013 43.9 11.3 68 573-650 324-395 (587)
239 PF05592 Bac_rhamnosid: Bacter 86.6 13 0.00027 44.1 14.9 116 531-658 197-326 (509)
240 cd03029 GRX_hybridPRX5 Glutare 86.4 2 4.4E-05 36.5 6.1 58 143-217 4-61 (72)
241 cd03020 DsbA_DsbC_DsbG DsbA fa 86.3 0.62 1.3E-05 48.0 3.4 34 129-162 68-101 (197)
242 TIGR02739 TraF type-F conjugat 86.1 2.3 5E-05 46.1 7.7 80 129-217 143-227 (256)
243 TIGR02474 pec_lyase pectate ly 85.2 1 2.3E-05 49.4 4.6 39 385-424 49-87 (290)
244 COG0695 GrxC Glutaredoxin and 85.1 2.4 5.3E-05 37.5 6.1 53 143-209 4-59 (80)
245 PLN03012 Camelliol C synthase 84.8 86 0.0019 39.3 21.0 59 359-425 471-534 (759)
246 PRK11097 endo-1,4-D-glucanase; 84.6 14 0.00031 42.2 13.4 131 580-719 74-213 (376)
247 PRK13189 peroxiredoxin; Provis 84.2 2.7 6E-05 44.4 7.1 36 203-242 125-160 (222)
248 TIGR01577 oligosac_amyl oligos 84.2 1.1E+02 0.0024 37.3 33.4 115 284-415 257-392 (616)
249 KOG2431 1, 2-alpha-mannosidase 83.9 6.7 0.00014 44.8 10.1 122 578-719 151-275 (546)
250 TIGR02474 pec_lyase pectate ly 83.9 45 0.00098 36.9 16.3 114 519-654 29-150 (290)
251 cd02889 SQCY Squalene cyclase 83.8 32 0.00069 38.2 15.8 156 541-721 29-204 (348)
252 PRK13703 conjugal pilus assemb 83.6 2.9 6.2E-05 45.1 6.9 81 128-217 135-220 (248)
253 KOG0911 Glutaredoxin-related p 83.3 0.49 1.1E-05 49.7 1.0 62 137-210 16-77 (227)
254 PF06202 GDE_C: Amylo-alpha-1, 82.8 31 0.00068 39.3 15.4 141 577-721 50-209 (370)
255 TIGR01561 gde_arch glycogen de 82.8 27 0.00059 42.2 15.4 112 537-661 347-479 (575)
256 PRK12759 bifunctional gluaredo 82.0 2.2 4.7E-05 49.4 5.7 63 142-217 4-71 (410)
257 PLN02993 lupeol synthase 81.7 1.1E+02 0.0025 38.3 20.4 60 358-425 470-534 (763)
258 KOG1731 FAD-dependent sulfhydr 81.1 0.86 1.9E-05 53.7 2.0 71 139-218 58-131 (606)
259 cd02894 GGTase-II Geranylgeran 80.7 93 0.002 34.1 19.9 69 579-662 198-268 (287)
260 KOG3425 Uncharacterized conser 80.1 4.4 9.5E-05 38.8 5.9 53 128-186 12-78 (128)
261 TIGR03463 osq_cycl 2,3-oxidosq 79.5 1.6E+02 0.0036 36.2 26.4 61 357-425 357-421 (634)
262 TIGR01535 glucan_glucosid gluc 79.1 37 0.0008 41.8 15.0 135 541-716 301-441 (648)
263 COG4833 Predicted glycosyl hyd 79.0 3.7 8.1E-05 44.3 5.7 88 539-658 47-136 (377)
264 KOG2204 Mannosyl-oligosacchari 78.9 89 0.0019 37.4 17.0 283 382-730 264-571 (625)
265 KOG2429 Glycosyl hydrolase, fa 78.6 25 0.00054 41.7 12.5 35 618-652 375-409 (622)
266 cd00688 ISOPREN_C2_like This g 78.6 90 0.0019 32.6 21.4 77 336-425 49-125 (300)
267 PF07678 A2M_comp: A-macroglob 78.4 32 0.00069 36.8 12.8 61 354-424 9-69 (246)
268 PF09492 Pec_lyase: Pectic aci 78.0 2.4 5.3E-05 46.6 4.2 47 377-424 33-82 (289)
269 PRK10137 alpha-glucosidase; Pr 77.8 1.1E+02 0.0024 38.4 18.6 49 382-430 581-636 (786)
270 TIGR01787 squalene_cyclas squa 75.2 17 0.00037 44.4 10.8 118 281-424 386-529 (621)
271 KOG2431 1, 2-alpha-mannosidase 75.1 1.1E+02 0.0023 35.5 15.8 90 631-731 389-489 (546)
272 cd02890 PTase Protein prenyltr 71.2 55 0.0012 35.5 12.6 122 281-425 45-167 (286)
273 TIGR01787 squalene_cyclas squa 70.7 2.6E+02 0.0057 34.3 22.7 28 397-425 382-409 (621)
274 PLN03012 Camelliol C synthase 70.4 23 0.00049 44.2 10.2 65 577-643 639-710 (759)
275 PTZ00062 glutaredoxin; Provisi 70.2 15 0.00032 38.6 7.5 72 129-218 104-180 (204)
276 PLN02345 endoglucanase 70.0 1.4E+02 0.003 35.4 16.2 118 573-711 82-228 (469)
277 KOG0366 Protein geranylgeranyl 68.8 1.7E+02 0.0037 32.0 14.8 72 580-664 213-284 (329)
278 PRK10824 glutaredoxin-4; Provi 68.0 27 0.00058 33.4 8.0 30 128-158 5-38 (115)
279 cd02972 DsbA_family DsbA famil 67.9 15 0.00034 31.6 6.2 17 143-159 2-18 (98)
280 PLN02266 endoglucanase 67.5 2E+02 0.0043 34.5 16.9 126 572-714 129-281 (510)
281 PRK10137 alpha-glucosidase; Pr 67.0 48 0.001 41.6 12.0 46 617-662 582-634 (786)
282 PF13249 Prenyltrans_2: Prenyl 66.5 22 0.00047 32.5 7.1 22 402-424 91-112 (113)
283 PF09492 Pec_lyase: Pectic aci 66.2 21 0.00045 39.5 7.9 84 528-633 33-119 (289)
284 KOG2204 Mannosyl-oligosacchari 64.6 10 0.00022 44.8 5.3 96 614-718 262-363 (625)
285 TIGR03463 osq_cycl 2,3-oxidosq 64.2 1.3E+02 0.0029 37.0 15.1 134 541-697 310-466 (634)
286 KOG2430 Glycosyl hydrolase, fa 63.3 36 0.00078 38.0 8.9 95 536-649 183-283 (587)
287 cd03023 DsbA_Com1_like DsbA fa 62.3 8 0.00017 37.0 3.5 23 136-158 3-25 (154)
288 PF01270 Glyco_hydro_8: Glycos 61.4 30 0.00064 39.1 8.3 99 539-656 114-216 (342)
289 PF00759 Glyco_hydro_9: Glycos 60.7 2.1E+02 0.0045 33.2 15.4 126 572-717 93-247 (444)
290 PF01270 Glyco_hydro_8: Glycos 60.6 1.1E+02 0.0024 34.6 12.7 131 580-721 75-211 (342)
291 PLN00119 endoglucanase 60.4 3.3E+02 0.0072 32.5 16.8 119 573-712 117-264 (489)
292 PRK11097 endo-1,4-D-glucanase; 59.6 69 0.0015 36.8 10.8 105 530-650 108-215 (376)
293 PLN02308 endoglucanase 58.6 3.9E+02 0.0084 32.0 17.1 121 573-713 112-262 (492)
294 PF02630 SCO1-SenC: SCO1/SenC; 57.8 14 0.00031 37.4 4.5 56 134-192 48-110 (174)
295 PF04685 DUF608: Protein of un 56.9 39 0.00085 38.6 8.3 38 377-414 96-137 (365)
296 PF13848 Thioredoxin_6: Thiore 56.4 41 0.00088 33.3 7.6 78 128-216 84-164 (184)
297 cd03060 GST_N_Omega_like GST_N 56.0 42 0.0009 28.2 6.5 59 145-219 4-62 (71)
298 PF05768 DUF836: Glutaredoxin- 55.7 23 0.00051 31.1 5.0 56 142-212 2-58 (81)
299 TIGR01507 hopene_cyclase squal 55.3 75 0.0016 39.1 10.9 112 297-425 362-492 (635)
300 COG3408 GDB1 Glycogen debranch 55.1 82 0.0018 38.8 11.1 99 573-673 362-482 (641)
301 COG1999 Uncharacterized protei 53.9 22 0.00048 37.2 5.3 57 132-191 61-125 (207)
302 PF01204 Trehalase: Trehalase; 52.6 2.8E+02 0.006 33.3 14.8 54 535-600 305-361 (512)
303 PF05592 Bac_rhamnosid: Bacter 51.9 2.3E+02 0.0049 33.5 14.0 195 498-722 109-319 (509)
304 PLN02909 Endoglucanase 51.0 5E+02 0.011 31.0 16.6 117 572-712 119-264 (486)
305 PRK13271 treA trehalase; Provi 50.7 4.2E+02 0.0091 32.3 15.9 103 535-661 337-443 (569)
306 PRK13270 treF trehalase; Provi 50.0 5.2E+02 0.011 31.4 16.4 128 536-695 348-481 (549)
307 cd02897 A2M_2 Proteins similar 49.7 54 0.0012 35.8 7.8 77 336-424 46-122 (292)
308 TIGR00162 conserved hypothetic 48.3 2.7E+02 0.0059 28.8 12.2 140 110-267 15-165 (188)
309 PLN03009 cellulase 47.7 5.6E+02 0.012 30.7 18.5 146 541-713 90-265 (495)
310 PLN02613 endoglucanase 46.0 6E+02 0.013 30.5 16.9 120 572-713 111-257 (498)
311 TIGR01561 gde_arch glycogen de 46.0 3.4E+02 0.0075 33.1 14.3 138 577-721 313-468 (575)
312 PF04545 Sigma70_r4: Sigma-70, 45.6 32 0.0007 27.2 3.9 29 493-521 22-50 (50)
313 cd03019 DsbA_DsbA DsbA family, 45.3 14 0.00031 36.5 2.3 24 137-160 14-37 (178)
314 cd03040 GST_N_mPGES2 GST_N fam 44.8 45 0.00097 28.4 5.0 61 144-220 4-65 (77)
315 PF03200 Glyco_hydro_63: Manno 44.6 2.2E+02 0.0048 36.1 12.8 54 536-601 560-613 (801)
316 cd03051 GST_N_GTT2_like GST_N 41.9 78 0.0017 26.1 6.0 63 144-219 3-65 (74)
317 cd02896 complement_C3_C4_C5 Pr 40.8 2.3E+02 0.005 31.2 11.0 116 283-428 170-286 (297)
318 PF06053 DUF929: Domain of unk 40.7 15 0.00032 39.7 1.6 59 136-214 56-116 (249)
319 PLN02175 endoglucanase 40.6 7.1E+02 0.015 29.8 15.6 121 573-712 108-258 (484)
320 PF13417 GST_N_3: Glutathione 40.5 1.3E+02 0.0027 25.6 7.1 58 145-219 2-59 (75)
321 PRK05778 2-oxoglutarate ferred 40.3 1.2E+02 0.0025 33.9 8.5 56 124-180 179-234 (301)
322 cd03036 ArsC_like Arsenate Red 40.1 31 0.00068 32.3 3.5 58 144-215 3-61 (111)
323 PF13462 Thioredoxin_4: Thiore 39.6 37 0.0008 32.9 4.1 44 136-181 10-54 (162)
324 PF04685 DUF608: Protein of un 39.5 1.1E+02 0.0024 34.9 8.5 107 536-660 97-217 (365)
325 PRK10954 periplasmic protein d 39.5 37 0.00081 35.2 4.3 43 138-181 37-80 (207)
326 KOG3760 Heparan sulfate-glucur 38.0 2.5E+02 0.0055 32.3 10.5 141 539-713 418-582 (594)
327 COG4545 Glutaredoxin-related p 37.3 57 0.0012 28.9 4.3 65 138-219 2-78 (85)
328 PF07678 A2M_comp: A-macroglob 35.4 1.1E+02 0.0025 32.6 7.3 116 282-428 112-233 (246)
329 cd03031 GRX_GRX_like Glutaredo 34.7 83 0.0018 31.3 5.7 29 149-187 15-44 (147)
330 cd02977 ArsC_family Arsenate R 34.5 34 0.00073 31.5 2.7 60 144-217 3-63 (105)
331 PF13243 Prenyltrans_1: Prenyl 33.9 10 0.00022 34.6 -0.8 39 385-424 28-66 (109)
332 PLN02420 endoglucanase 33.3 9.5E+02 0.02 29.1 17.3 145 541-714 103-277 (525)
333 cd02983 P5_C P5 family, C-term 33.0 1.2E+02 0.0026 29.4 6.3 44 164-215 47-93 (130)
334 cd00570 GST_N_family Glutathio 32.9 1.2E+02 0.0026 23.9 5.6 60 144-219 3-62 (71)
335 PRK01655 spxA transcriptional 32.4 52 0.0011 31.9 3.7 34 143-186 3-37 (131)
336 TIGR02177 PorB_KorB 2-oxoacid: 32.3 1.9E+02 0.0041 32.1 8.5 97 126-247 164-266 (287)
337 PF04967 HTH_10: HTH DNA bindi 32.3 67 0.0014 26.5 3.8 29 492-520 24-52 (53)
338 PF08281 Sigma70_r4_2: Sigma-7 30.8 64 0.0014 25.7 3.5 27 493-519 28-54 (54)
339 TIGR02957 SigX4 RNA polymerase 28.9 1.2E+02 0.0025 33.1 6.2 53 493-552 126-178 (281)
340 PF01204 Trehalase: Trehalase; 28.1 87 0.0019 37.5 5.4 44 620-663 317-364 (512)
341 PF02114 Phosducin: Phosducin; 27.6 77 0.0017 34.7 4.4 66 139-219 147-213 (265)
342 TIGR00161 conserved hypothetic 27.3 2.5E+02 0.0054 30.1 8.2 128 119-267 88-221 (238)
343 COG1225 Bcp Peroxiredoxin [Pos 25.5 3.4E+02 0.0075 27.4 8.2 32 131-163 23-55 (157)
344 PRK13271 treA trehalase; Provi 25.0 1.1E+02 0.0023 37.3 5.3 42 622-663 351-396 (569)
345 PRK12559 transcriptional regul 24.8 72 0.0016 31.0 3.2 33 143-185 3-36 (131)
346 TIGR01535 glucan_glucosid gluc 24.8 1.4E+03 0.031 28.4 24.4 160 234-416 209-386 (648)
347 KOG1672 ATP binding protein [P 24.6 86 0.0019 32.8 3.8 73 125-213 72-147 (211)
348 TIGR02393 RpoD_Cterm RNA polym 24.5 96 0.0021 32.9 4.5 29 493-521 198-226 (238)
349 PLN02710 farnesyltranstransfer 24.2 7.3E+02 0.016 29.3 11.8 21 404-425 192-212 (439)
350 TIGR01617 arsC_related transcr 23.9 1.2E+02 0.0026 28.5 4.5 59 144-216 3-62 (117)
351 PRK09636 RNA polymerase sigma 23.9 1.7E+02 0.0037 31.9 6.4 53 493-552 133-185 (293)
352 PF02011 Glyco_hydro_48: Glyco 23.6 1.1E+03 0.023 28.8 12.8 44 382-425 409-453 (619)
353 COG3408 GDB1 Glycogen debranch 23.4 6.5E+02 0.014 31.2 11.7 138 577-721 303-461 (641)
354 COG5498 ACF2 Predicted glycosy 23.3 1.5E+03 0.032 28.0 14.0 104 616-724 514-628 (760)
355 PRK09635 sigI RNA polymerase s 23.2 1.7E+02 0.0036 32.3 6.2 53 493-552 136-188 (290)
356 PRK08241 RNA polymerase factor 23.1 2E+02 0.0043 32.1 6.8 55 493-551 171-227 (339)
357 PF07449 HyaE: Hydrogenase-1 e 22.9 41 0.00089 31.7 1.1 67 138-218 26-96 (107)
358 PF02011 Glyco_hydro_48: Glyco 22.7 2.8E+02 0.006 33.5 7.8 102 538-655 404-529 (619)
359 PRK13272 treA trehalase; Provi 22.3 1.5E+03 0.032 27.6 14.6 98 537-660 340-442 (542)
360 PRK05901 RNA polymerase sigma 21.8 1E+02 0.0023 36.8 4.4 48 453-522 451-498 (509)
361 cd02893 FTase Protein farnesyl 21.5 1.1E+03 0.024 26.0 13.3 21 404-425 147-167 (299)
362 PF03200 Glyco_hydro_63: Manno 21.2 4.7E+02 0.01 33.3 10.1 48 617-664 565-616 (801)
363 cd02891 A2M_like Proteins simi 20.2 3.6E+02 0.0079 28.7 8.0 77 336-425 46-122 (282)
364 cd03055 GST_N_Omega GST_N fami 20.2 3.5E+02 0.0075 23.8 6.5 60 144-219 21-80 (89)
No 1
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-169 Score=1439.20 Aligned_cols=656 Identities=45% Similarity=0.763 Sum_probs=613.4
Q ss_pred ccccccccCCChhhhcccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEE
Q 003187 100 KHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV 179 (840)
Q Consensus 100 ~~~NrL~~e~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkv 179 (840)
.++|||++|+|||||||++|||+|+||++|||++||++||||||||||+||||||||++|+|+||+||++||++||+|||
T Consensus 5 ~~~NrL~~e~SpYL~~ha~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKV 84 (667)
T COG1331 5 SMPNRLINEKSPYLLQHAHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKV 84 (667)
T ss_pred CcCccCccCCCHHHHhccCCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHH
Q 003187 180 DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFA 259 (840)
Q Consensus 180 D~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~ 259 (840)
|||||||||++||+++|+++|+||||++|||||||+|||++||+|++++.|+|||+++|++|.+.|+++|++++++|+++
T Consensus 85 DREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~W~edr~~~~~~a~~~ 164 (667)
T COG1331 85 DREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRETWREDREELLQSAERV 164 (667)
T ss_pred ChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccCCCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHH
Q 003187 260 IEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQK 339 (840)
Q Consensus 260 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~ 339 (840)
.+.++....+. .+..++++.++++++++.+.||++|||||++||||+|+.+.|||+++.+++ ++++++
T Consensus 165 ~~~l~~~~~~~-----~~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~~~l~~Llr~~~~~~-------d~~~~~ 232 (667)
T COG1331 165 LEALEGLARPS-----AGEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPPHLLLFLLRYSLRTG-------DERALD 232 (667)
T ss_pred HHHHHhccCCC-----ccccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCChHHHHHHHHHHHhhC-------CHHHHH
Confidence 99998755221 123556788999999999999999999999999999999999999988754 479999
Q ss_pred HHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC
Q 003187 340 MVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP 419 (840)
Q Consensus 340 ~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~ 419 (840)
|+++||++|+.||||||+||||||||||++|.||||||||||||+|+.+|++||++|||++|+++|++|++||+|+|++|
T Consensus 233 ~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp 312 (667)
T COG1331 233 MVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSP 312 (667)
T ss_pred HHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEeeccCCcccccccccccccchhH------HHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCC
Q 003187 420 GGEIFSAEDADSAETEGATRKKEGAFYV------EDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELND 493 (840)
Q Consensus 420 ~Ggfysa~DADs~~~~~~~~~~EGayY~------~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~ 493 (840)
+||||+|+|||+. ++||+||+ +.+||+++++|+++|+|+++|| |+|+||||+..+
T Consensus 313 ~ggFyss~DAD~~-------g~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~f~vs~~Gn------------feGrnvL~~~~~ 373 (667)
T COG1331 313 EGGFYSSLDADSD-------GEEGKYYTWSVEELKEVLGEDAELACKYFDVSEEGN------------FEGRNVLHVPGP 373 (667)
T ss_pred CCceeecccccCc-------ccCCCeeecCHHHHHHHhcccHHHHHHHcccCCCCC------------cCCceeecccCc
Confidence 9999999999995 69999999 6789999999999999999999 579999999988
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChH
Q 003187 494 SSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRK 573 (840)
Q Consensus 494 ~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~ 573 (840)
.++ + ++++++.++.+|+||+.+|++|++|++||||+|+||||||.||+.|++++++ +
T Consensus 374 ~~~-~------~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~~~d----------------~ 430 (667)
T COG1331 374 LEE-A------IEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRVLGD----------------P 430 (667)
T ss_pred hhh-h------hhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHHHHcCC----------------h
Confidence 776 2 7889999999999999999999999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 003187 574 EYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 653 (840)
Q Consensus 574 ~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~ 653 (840)
+|++.|+++++||.+++++ ++|.|.+++|.....++++|||++|.|+++||++|+|.+||+.|++|++.++++|||+
T Consensus 431 ~~l~~A~~~~~fi~~~l~~---~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~ 507 (667)
T COG1331 431 EYLEAAERAADFILDNLYV---DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDD 507 (667)
T ss_pred HHHHHHHHHHHHHHHhhcc---cchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999997 3899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 003187 654 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCC 733 (840)
Q Consensus 654 ~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~~l~ 733 (840)
+ ||||+++.+++.+++|+++..|+++||+||+++.+|++|+.+||+ ..|.+.|+++|+.|.+.+.++|.++++++.
T Consensus 508 ~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~---~~y~e~A~~~L~a~~~~~~~~p~~~~~~~~ 583 (667)
T COG1331 508 E-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGD---ARYLEAAEDILQAFAGLAERAPFAHAGLLL 583 (667)
T ss_pred C-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCc---hhHHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 8 779999999999999999999999999999999999999999996 889999999999999999999999999999
Q ss_pred HHHHhcCCCccEEEEecCCCchhHHHHHHHHHhcCCCCeEEEEeCCCCcchhhhhhhccccchhhhcccCCCCccEEEEc
Q 003187 734 AADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVC 813 (840)
Q Consensus 734 a~~~~~~~~~~~vvvvg~~~~~~~~~ll~~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayVC 813 (840)
+++++..+ ..+|||+| ....++++++.+.|+|.+++++...+.. .+.+..+ .++|+ ++|||
T Consensus 584 a~~~~~~~-~~~ivvv~----~~~~~~~~~~~~~~~P~~~l~~~~~~~~---------~~~~~~~----l~~g~-~ayvC 644 (667)
T COG1331 584 AAEFLISG-PLVIVVAG----DPRSELLRAALRLYLPEKVLVVGTEGYV---------SLLVDGM----LGGGK-TAYVC 644 (667)
T ss_pred HHHHHcCC-ceEEEEeC----CCcHHHHHHHHhcCCcceEEEEeccccc---------Ccchhhc----cCCCC-eEEEe
Confidence 99998866 58888888 2346799999999999999987643211 0111111 12444 99999
Q ss_pred cCCccCCCCCCHHHHHHHhhcC
Q 003187 814 QNFSCSPPVTDPISLENLLLEK 835 (840)
Q Consensus 814 ~~~~C~~Pvt~~~~L~~~L~~~ 835 (840)
+|++|++||+++++|.++|...
T Consensus 645 ~~~~C~~P~~~~e~l~~~l~~~ 666 (667)
T COG1331 645 TGDACLPPVTSPEELAELLAVL 666 (667)
T ss_pred cCCccCCCcCCHHHHHHHHhhc
Confidence 9999999999999999999753
No 2
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=100.00 E-value=4.4e-168 Score=1365.21 Aligned_cols=687 Identities=62% Similarity=1.038 Sum_probs=639.0
Q ss_pred cccccccCCChhhhcccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc
Q 003187 101 HTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (840)
Q Consensus 101 ~~NrL~~e~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD 180 (840)
.-|||+.++||||+|||.|||+|+||++|||++|++|||||||++||++|||||+||+|+|+|++++++||++||.||||
T Consensus 75 ~~nRli~skspyllqhaynpvdwypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVD 154 (786)
T KOG2244|consen 75 PLNRLISSKSPYLLQHAYNPVDWYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVD 154 (786)
T ss_pred ccccccccCCcchhhhccCCcccCcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHHH
Q 003187 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAI 260 (840)
Q Consensus 181 ~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~~ 260 (840)
||||||+|+.||+++++..|.||||+.||||||.+|+.+||||||++++|+++|.++|++|++.|.++|+.+++.+..++
T Consensus 155 REERPDVDK~YM~Fv~assg~GGWPmsV~LTPdL~PlvgGTYFPP~d~~g~~gF~TvL~~I~~~w~~kr~tllet~~~~i 234 (786)
T KOG2244|consen 155 REERPDVDKLYMAFVVASSGGGGWPMSVFLTPDLKPLVGGTYFPPNDNYGRPGFKTVLKKIKDAWNSKRDTLLETGTYAI 234 (786)
T ss_pred hhhcCchHHHHHHHHHhccCCCCCceeEEeCCCcccccCCcccCCCCCCCCccHHHHHHHHHHHHHhhhhHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccCCCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 003187 261 EQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKM 340 (840)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~ 340 (840)
..|++++++.+. .-+.+++++.+.++.++||||.+||||.+..|.||..+... +++++.+.|
T Consensus 235 s~ls~al~peaa-----------~g~~~~ekl~e~i~~~~qGfg~apKFP~~~~L~FLf~~~lt-------~k~~d~~~M 296 (786)
T KOG2244|consen 235 SELSKALSPEAA-----------TGDNRAEKLSEGISREAQGFGEAPKFPKACDLDFLFTFNLT-------SKADDEKSM 296 (786)
T ss_pred HHHHhhcCcccc-----------ccchhHHHHHHHHHHHhhhhccCCCCCCccccceeeeeccc-------ccCcHHHHH
Confidence 888765542111 11256788999999999999999999999999999987542 346789999
Q ss_pred HHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC
Q 003187 341 VLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG 420 (840)
Q Consensus 341 a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~ 420 (840)
+.+||+.|+.|||+|||||||||||||+.|+|||||||||||+||+.+|+++|++|+|+.|..+|+++++||.|+|.+|+
T Consensus 297 vl~TL~~manGGihDHIg~GFhRYsv~~~WHvpHFEKMLYDQ~QL~~aysdafklT~de~y~~va~~I~qYl~rdlsh~~ 376 (786)
T KOG2244|consen 297 VLFTLQGMANGGIHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANAYSDAFKLTKDEMYSYVARDILQYLRRDLSHPE 376 (786)
T ss_pred HHHHHHHHhcCCccccccCceeeccccccccchhHHHHHhhHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeeccCCcccccccccccccchhH------HHhhhhh-------HHHHHHHhCccCCCCcCCCCCCCCCCccCCcce
Q 003187 421 GEIFSAEDADSAETEGATRKKEGAFYV------EDILGEH-------AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNV 487 (840)
Q Consensus 421 Ggfysa~DADs~~~~~~~~~~EGayY~------~~vLg~~-------~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nv 487 (840)
||||+++||||.|.+|++.++|||||+ +++||+. +++++.+|||++.||+ ++.+||||++.|+||
T Consensus 377 GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~~i~p~~~fdl~a~hygvk~sGnv--s~ssDPhgel~gkNV 454 (786)
T KOG2244|consen 377 GGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGENAIGPASLFDLFAEHYGVKKSGNV--SSSSDPHGELAGKNV 454 (786)
T ss_pred CCcccccccCCCcccccccccccceEEeeHHHHHHHhCCCCCCcchHHHHHHHHcCCCCCCCC--CCCCCCcccccCceE
Confidence 999999999999999999999999999 6778854 4999999999999996 577899999999999
Q ss_pred eeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 003187 488 LIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPV 567 (840)
Q Consensus 488 L~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~ 567 (840)
|.++.+.++.|..|+++++++++.|.+++++|+++|.+||+|++|+|||++||||||++|++++++++.+
T Consensus 455 L~vr~s~e~taanf~lsve~~kkll~e~~e~L~~aR~kRPkPHLDsKii~sWnGLviSgl~kag~~~~a~---------- 524 (786)
T KOG2244|consen 455 LIVRNSTEATAANFSLSVEKYKKLLGECREKLFDARLKRPKPHLDSKIIVSWNGLVISGLAKAGKILKAE---------- 524 (786)
T ss_pred EEEecchHhhHhhccccHHHHHHHHHHHHHHHHHHhhcCCCCCccchheeeccchhhHHHHHHHHHhhcC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccCCCeEEE-eecCCC----------CCCCCCcchHHHHHHHHHHHHHHcCCHHHH
Q 003187 568 VGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH-SFRNGP----------SKAPGFLDDYAFLISGLLDLYEFGSGTKWL 636 (840)
Q Consensus 568 ~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~-~~~~g~----------~~~~~~leDyA~~i~aLl~LYeaTgd~~yL 636 (840)
++|++.|..+++||.++|+|...+.|.+ +.++|. ...++|++||||+|.|||+||+++|+.+||
T Consensus 525 -----~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gLLDlYea~~~~e~L 599 (786)
T KOG2244|consen 525 -----PEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGLLDLYEAGGGIEWL 599 (786)
T ss_pred -----HHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHHHHHHHccCchHHH
Confidence 6999999999999999999987788887 444432 134679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 003187 637 VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 716 (840)
Q Consensus 637 ~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~ 716 (840)
+||.+|++.+..+||| +||||.+..+++.+++|.|++.|||+||+||+.++||+||+.+++. +.|++.|.+++..
T Consensus 600 kwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~---e~yl~ka~~ll~~ 674 (786)
T KOG2244|consen 600 KWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAA---ESYLNKAHRLLAV 674 (786)
T ss_pred HHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhH---HHHHHHHHHHHHH
Confidence 9999999999999999 8999998888999999999999999999999999999999999985 8999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhcCCCccEEEEecCCCchhHHHHHHHHHhcCCCCeEEEEeCCCCcchhhhhhhccccch
Q 003187 717 FETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNA 796 (840)
Q Consensus 717 ~~~~i~~~p~~~~~~l~a~~~~~~~~~~~vvvvg~~~~~~~~~ll~~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~ 796 (840)
|+.++.+.|.+.|.|++|+.+. ++..++|||||+++++++.+++.++++.|+|+++|++++|++.. +++....++..
T Consensus 675 fseRl~~vpvAlPeM~~Al~~~-q~glk~vvlvGd~~s~d~~~~vs~~~s~yipn~~vihidpsd~e--e~s~~~ls~ka 751 (786)
T KOG2244|consen 675 FSERLREVPVALPEMCCALMIS-QPGLKQVVLVGDKSSPDLTNMVSAAHSVYIPNKTVIHIDPSDEE--EFSEEHLSNKA 751 (786)
T ss_pred HHHHhhccchhhHHHHHHHHhh-ccCcceEEEECCCCChHHHHHHHHHHHhcCCcceEEEeCCCCHH--HHHhccCchHH
Confidence 9999999999999999988664 45579999999999999999999999999999999999986643 45665566666
Q ss_pred hhhcccCCCCccEEEEccCCccCCCCCCHHHHHHHhh
Q 003187 797 SMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLL 833 (840)
Q Consensus 797 ~~~~~~~~~~~~~ayVC~~~~C~~Pvt~~~~L~~~L~ 833 (840)
.|.+ .++++++|||++++|++||+++.+|+++|.
T Consensus 752 ~m~~---~g~k~tayvC~~~aC~~PVtdpqeLe~l~s 785 (786)
T KOG2244|consen 752 EMAK---NGEKVTAYVCQHFACSPPVTDPQELERLLS 785 (786)
T ss_pred HHHh---cCCCceEEEecCcccCCCCCCHHHHHHHhc
Confidence 6653 478999999999999999999999999875
No 3
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=100.00 E-value=1.2e-55 Score=433.85 Aligned_cols=163 Identities=61% Similarity=1.166 Sum_probs=134.5
Q ss_pred ccccccCCChhhhcccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcC
Q 003187 102 TNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (840)
Q Consensus 102 ~NrL~~e~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ 181 (840)
+|||+.|+|||||||+++||+|++|++||+++||+++|||||+||++||||||+|+++||+||+|+++||++||+||||+
T Consensus 1 ~N~l~~~~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDr 80 (163)
T PF03190_consen 1 TNRLANSKSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDR 80 (163)
T ss_dssp --GGGG---HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEET
T ss_pred CCccccCCCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHHHH
Q 003187 182 EERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIE 261 (840)
Q Consensus 182 ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~~~ 261 (840)
|++||++..||+++|+++|.+|||++|||||+|+||+++||+|++++.|+++|+++|++|++.|+++|++|++.|++|.+
T Consensus 81 ee~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~~~~~~~~~~a~~i~~ 160 (163)
T PF03190_consen 81 EERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWKENREQVEESADEILE 160 (163)
T ss_dssp TT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHHHSHHHHHHHHHHT-S
T ss_pred ccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 003187 262 QLS 264 (840)
Q Consensus 262 ~l~ 264 (840)
+|+
T Consensus 161 ~l~ 163 (163)
T PF03190_consen 161 ALQ 163 (163)
T ss_dssp HH-
T ss_pred hhC
Confidence 764
No 4
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.97 E-value=1.6e-31 Score=254.75 Aligned_cols=124 Identities=73% Similarity=1.386 Sum_probs=120.1
Q ss_pred ccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003187 124 FAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 124 ~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G 203 (840)
++|+++|+++|+++||||||+|+++||+|||+|++++|+||+|++.||++||+|+||+++.|++.+.|++..+.+.|++|
T Consensus 1 ~~~~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 1 YPWGEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CCCCHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHH
Q 003187 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDK 247 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~ 247 (840)
||++||++|+|+++++++|+|+++.++.++|.++|++|.+.|++
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRELWRE 124 (124)
T ss_pred CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999973
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.94 E-value=7.2e-25 Score=245.74 Aligned_cols=258 Identities=20% Similarity=0.187 Sum_probs=212.8
Q ss_pred HHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-
Q 003187 342 LFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG- 420 (840)
Q Consensus 342 ~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~- 420 (840)
+.-|..... -.+|+..|||+ .++|.++.+..-.|.+|.||++|++|+.+|++++++.+++.|+++++||.+++++++
T Consensus 17 ~~~~~fw~~-~~~d~~~gg~~-~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~ 94 (384)
T cd00249 17 EDLLPFWLE-AGLDREAGGFF-ECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDH 94 (384)
T ss_pred HHHHHHHHh-cCCCCCCCCeE-EEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCC
Confidence 444554444 35898899999 699999998777999999999999999999999999999999999999999999988
Q ss_pred CceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHh
Q 003187 421 GEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASK 500 (840)
Q Consensus 421 Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~ 500 (840)
|||+.+.|.|..+.+
T Consensus 95 Gg~~~~~~~~g~~~~----------------------------------------------------------------- 109 (384)
T cd00249 95 GGWYFALDQDGRPVD----------------------------------------------------------------- 109 (384)
T ss_pred CCEEEEEcCCCCCcc-----------------------------------------------------------------
Confidence 999999887653100
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHH
Q 003187 501 LGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAE 580 (840)
Q Consensus 501 ~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~ 580 (840)
..+.+.+ .+++|.||+.+++++++ ++|++.|+
T Consensus 110 --------------------------~~~~l~~------~a~~l~ala~~~~at~d----------------~~~l~~A~ 141 (384)
T cd00249 110 --------------------------ATKDLYS------HAFALLAAAQAAKVGGD----------------PEARALAE 141 (384)
T ss_pred --------------------------cccchHH------HHHHHHHHHHHHHhcCC----------------HHHHHHHH
Confidence 0011223 39999999999999998 89999999
Q ss_pred HHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCcccc
Q 003187 581 SAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 660 (840)
Q Consensus 581 ~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 660 (840)
++++++.++++ +++|+++.....+....++ .++|++++++++.++++|+|++|++.|+++++.+.++|+|+++|+++.
T Consensus 142 ~~~~~l~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e 219 (384)
T cd00249 142 ETIDLLERRFW-EDHPGAFDEADPGTPPYRG-SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAESGVVRE 219 (384)
T ss_pred HHHHHHHHHhc-cCCCcccCCCCCCCCCCCC-CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccCeEEE
Confidence 99999999999 4456665443332233455 899999999999999999999999999999999999999988888887
Q ss_pred CCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003187 661 TTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 661 t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i 721 (840)
+..++..++ ..+..+...|++++.++++|++|++++++ +.|.+.|++++..+....
T Consensus 220 ~~~~~~~~~--~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~---~~~~~~a~~~~~~~~~~~ 275 (384)
T cd00249 220 HFDEDWNPY--NGDKGRHQEPGHQFEWAWLLLRIASRSGQ---AWLIEKARRLFDLALALG 275 (384)
T ss_pred EECCCCCCC--cCcCCCcCCCchHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHhC
Confidence 665555544 34455678899999999999999999985 789999999988876544
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.91 E-value=3.9e-22 Score=223.70 Aligned_cols=307 Identities=16% Similarity=0.094 Sum_probs=230.5
Q ss_pred HHHHHHHHHHh-cccCCCCCCCC------CCCCCCh---hHHHHHHHhh-hhhcccCCCCCCHHHHHHHHHHHHHHHhCC
Q 003187 284 ALRLCAEQLSK-SYDSRFGGFGS------APKFPRP---VEIQMMLYHS-KKLEDTGKSGEASEGQKMVLFTLQCMAKGG 352 (840)
Q Consensus 284 ~~~~~~~~l~~-~~D~~~GGfg~------aPKFP~~---~~l~~Ll~~~-~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GG 352 (840)
.++.++..|.+ .+|+++|||.. .|. +.+ ....+++... .... ..++++++++|.++++.|.+ -
T Consensus 15 ~~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~-~~~k~~~~~ar~i~~~a~a~~----~~~~~~~l~~A~~~~~fl~~-~ 88 (384)
T cd00249 15 LLEDLLPFWLEAGLDREAGGFFECLDRDGQPF-DTDRRLWLQARQVYCFAVAYL----LGWRPEWLEAAEHGLEYLDR-H 88 (384)
T ss_pred HHHHHHHHHHhcCCCCCCCCeEEEECCCCCCC-CCCCeEEEecHHHHHHHHHHH----hcCChhHHHHHHHHHHHHHH-h
Confidence 35677888887 57999999965 222 111 1112222211 1111 12357899999999999988 6
Q ss_pred CcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcc
Q 003187 353 IHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSA 432 (840)
Q Consensus 353 i~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~ 432 (840)
.+|..+|||++ ++|++|.+.+..|+|||+|.++.+|+.+|++|+++.|++.|+++++++.+.++++.||++...+.|..
T Consensus 89 ~~d~~~Gg~~~-~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~ 167 (384)
T cd00249 89 GRDPDHGGWYF-ALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTP 167 (384)
T ss_pred CcCCCCCCEEE-EEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCC
Confidence 77877799984 99999999889999999999999999999999999999999999999999998556777654333210
Q ss_pred cccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHH
Q 003187 433 ETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNIL 512 (840)
Q Consensus 433 ~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l 512 (840)
+
T Consensus 168 ~------------------------------------------------------------------------------- 168 (384)
T cd00249 168 P------------------------------------------------------------------------------- 168 (384)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 003187 513 GECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD 592 (840)
Q Consensus 513 ~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d 592 (840)
.|...+ ++.++.+|.++++++++ ++|++.|+++++.+.+++++
T Consensus 169 ---------------~~~~~~------~~h~~~all~l~~~tgd----------------~~~~~~A~~l~~~~~~~~~~ 211 (384)
T cd00249 169 ---------------YRGSNP------HMHLLEAMLAAYEATGE----------------QKYLDRADEIADLILDRFID 211 (384)
T ss_pred ---------------CCCCCh------hHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHHhcC
Confidence 000011 24457889999999987 78999999999999999998
Q ss_pred cCCCeEEEeecCCCCCCC------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCC
Q 003187 593 EQTHRLQHSFRNGPSKAP------GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDP 666 (840)
Q Consensus 593 ~~~G~l~~~~~~g~~~~~------~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~ 666 (840)
+.+|+++..+.++..... ..+.-.+..+.++++++++++++.|++.|+++++.+.++++|+++|++|++..++.
T Consensus 212 ~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~ 291 (384)
T cd00249 212 AESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFLDDG 291 (384)
T ss_pred cccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeECCC
Confidence 777888766543311011 11122455688999999999999999999999999999999999888887332222
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003187 667 SVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 667 ~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i 721 (840)
.. ...|+..+++++.++.+++.|+.+||+ +.|.+.++++++......
T Consensus 292 ~~-----~~~~~~~~w~~~E~~~a~~~l~~~tgd---~~~~~~~~~~~~~~~~~~ 338 (384)
T cd00249 292 GL-----LEDDDKRWWPQTEALKAALALAGITGD---ERYWQWYQRAWAYLWRHF 338 (384)
T ss_pred CC-----cccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhc
Confidence 21 245789999999999999999999986 789999988888765444
No 7
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.81 E-value=5.8e-20 Score=175.83 Aligned_cols=91 Identities=19% Similarity=0.325 Sum_probs=78.5
Q ss_pred CCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCc-cHHHHHHHHHHH
Q 003187 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-DVDKVYMTYVQA 197 (840)
Q Consensus 119 ~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p-d~~~~y~~~~~~ 197 (840)
..|+|.+.+++|++.||++||||||+|+++||+||++|++++|+|++|++++|++||+|++|.+... ... .
T Consensus 4 ~~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~------- 75 (130)
T cd02960 4 DDIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-P------- 75 (130)
T ss_pred ccccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-c-------
Confidence 3599997779999999999999999999999999999999999999999999999999999876331 111 0
Q ss_pred hcCCCCCCcEEEECCCCceecc
Q 003187 198 LYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 198 ~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.| .|+|+++|+||+|+++..
T Consensus 76 -~g-~~vPtivFld~~g~vi~~ 95 (130)
T cd02960 76 -DG-QYVPRIMFVDPSLTVRAD 95 (130)
T ss_pred -cC-cccCeEEEECCCCCCccc
Confidence 13 589999999999988754
No 8
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.77 E-value=4.1e-19 Score=157.18 Aligned_cols=82 Identities=35% Similarity=0.577 Sum_probs=72.1
Q ss_pred cCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003187 122 DWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (840)
Q Consensus 122 ~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~ 201 (840)
+|++++++|+++|+++||||||.|+++||+||+.|++++|++++|.++++++||+|+||.+++......+ +
T Consensus 1 ~W~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~--------~- 71 (82)
T PF13899_consen 1 NWQSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFD--------R- 71 (82)
T ss_dssp -EESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHH--------H-
T ss_pred ChhhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhC--------C-
Confidence 5999999999999999999999999999999999999999999999999999999999997544322221 1
Q ss_pred CCCCcEEEECC
Q 003187 202 GGWPLSVFLSP 212 (840)
Q Consensus 202 ~G~P~~vfl~p 212 (840)
.|+|+++|++|
T Consensus 72 ~~~P~~~~ldp 82 (82)
T PF13899_consen 72 QGYPTFFFLDP 82 (82)
T ss_dssp CSSSEEEEEET
T ss_pred ccCCEEEEeCC
Confidence 47999999997
No 9
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.75 E-value=1.5e-17 Score=184.87 Aligned_cols=237 Identities=19% Similarity=0.253 Sum_probs=176.5
Q ss_pred eEEEEecCCCCCC-CCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceEeeccCCccccccc
Q 003187 360 GFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSAETEGA 437 (840)
Q Consensus 360 GF~RYsvD~~W~v-PHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~-Ggfysa~DADs~~~~~~ 437 (840)
|||. ++|.++.+ +-..|.+.-||+++++|+.||+ +|++.|+++|+++++||.+.+++++ ||||++.|.+. +.+
T Consensus 1 Gf~~-~ld~~g~~~~~~~k~~~~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~~~-- 75 (346)
T PF07221_consen 1 GFFE-CLDRDGKPDDSDKKRLWVQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-PLD-- 75 (346)
T ss_dssp SBE--EBBTTS-BECGGEEEHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-EEE--
T ss_pred Ccee-eeCCCCCCCCCCCceeeeeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-CCc--
Confidence 6776 49999987 4455699999999999999999 8899999999999999999999877 99999876433 100
Q ss_pred ccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHH
Q 003187 438 TRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRR 517 (840)
Q Consensus 438 ~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~ 517 (840)
T Consensus 76 -------------------------------------------------------------------------------- 75 (346)
T PF07221_consen 76 -------------------------------------------------------------------------------- 75 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCe
Q 003187 518 KLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHR 597 (840)
Q Consensus 518 kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~ 597 (840)
...-..-++++|.||+. +.++++ +++++.|+++.++|.++++|++.|+
T Consensus 76 ---------------~~~~~Y~~af~l~ala~-~~~tg~----------------~~~~~~A~~~~~~l~~~~~d~~~g~ 123 (346)
T PF07221_consen 76 ---------------PQKDLYDQAFALLALAE-ARATGD----------------PEALELAEQTLEFLERRFWDPEGGG 123 (346)
T ss_dssp -----------------EEHHHHHHHHHHHHH-HHCTT-----------------TTHHHHHHHHHHHHHHHTEETTTTE
T ss_pred ---------------cccchHHHHHHHHHHHH-HHHhCC----------------hhHHHHHHHHHHHHHHHhcccccCc
Confidence 00001135899999999 788887 7899999999999999999987776
Q ss_pred EEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCc---cccCCCCCCcccc--cc
Q 003187 598 LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLL--RV 672 (840)
Q Consensus 598 l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Gg---yf~t~~~~~~l~~--R~ 672 (840)
+......+ ....+..++++++++|++.||++|+++.|++.|.+|.+.+.++|+|+++|. ||+..+ .+.. ..
T Consensus 124 ~~~~~~~~-~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw---~~~~~~~~ 199 (346)
T PF07221_consen 124 YRESFDPD-WSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDW---NPLPDGSG 199 (346)
T ss_dssp E--EETTT-SSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTS---EBETTTTT
T ss_pred ceeccCCc-cccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeecccc---cccccccc
Confidence 65544332 222245899999999999999999999999999999999999999988875 444433 2111 00
Q ss_pred ccCCC--CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 003187 673 KEDHD--GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFE 718 (840)
Q Consensus 673 k~~~D--~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~ 718 (840)
.+... ...|.++-.+++.|++++..++.. ++.+.+.|+++.....
T Consensus 200 ~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~-~~~~~~~a~~l~~~~~ 246 (346)
T PF07221_consen 200 DDTFRGRIVEPGHDFEWAWLLLEAARLTGRG-DPDWLERARRLFDFAL 246 (346)
T ss_dssp THSTTTSSB-HHHHHHHHHHHHHHHHHCHCT--HTHHHHHHHHHHHHH
T ss_pred ccccccCccCCchhHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHH
Confidence 00111 267999999999999999544432 4678888877766543
No 10
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.71 E-value=2.7e-17 Score=154.39 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=88.8
Q ss_pred chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
..++|+++||+++|||||+|+++||++|+.|++++|+|++|.+.||++||.+++|.++ |+.. .+... .++.++|
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~-~~~~~----~~~~~~P 78 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQ-RFLQS----YKVDKYP 78 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHH-HHHHH----hCccCCC
Confidence 3589999999999999999999999999999999999999999999999999999985 4433 22222 3788999
Q ss_pred cEEEECC-CCceecc-ccccCCCCCCCcccHHHHHHHHH
Q 003187 206 LSVFLSP-DLKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 206 ~~vfl~p-~g~~~~~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
+++|++| +|+++.. .+|.+++ .|++.|+++.
T Consensus 79 ~~~~i~~~~g~~l~~~~G~~~~~------~f~~~L~~~~ 111 (114)
T cd02958 79 HIAIIDPRTGEVLKVWSGNITPE------DLLSQLIEFL 111 (114)
T ss_pred eEEEEeCccCcEeEEEcCCCCHH------HHHHHHHHHH
Confidence 9999999 8999876 4677766 5777776654
No 11
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.70 E-value=2.5e-17 Score=183.13 Aligned_cols=273 Identities=21% Similarity=0.199 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003187 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (840)
Q Consensus 334 ~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~ 413 (840)
.+..+++|.++++.|.+ ..+|...|||++ ++|+.. +....|.+||+|..+.++++ +.+++++.+++.|++++++|.
T Consensus 38 ~~~~l~~A~~~~~fl~~-~~~D~~~Gg~~~-~~~~~~-~~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~ 113 (346)
T PF07221_consen 38 RPEYLELAEHGFDFLRK-HFRDPEYGGWYR-SLDDGG-PLDPQKDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLE 113 (346)
T ss_dssp SHHHHHHHHHHHHHHHH-TTBTTTTSSBSS-EEETTE-EEE--EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH-hcccCCCCCEEE-EeCCCC-CCccccchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHH
Confidence 57899999999999988 667999999996 556666 77889999999999999999 899999999999999999999
Q ss_pred HhccCCC-CceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccC
Q 003187 414 RDMIGPG-GEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELN 492 (840)
Q Consensus 414 r~m~~~~-Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~ 492 (840)
+.+++++ |||..+.|.|..+..+ ..-+. .| .+.+...+.++.+.
T Consensus 114 ~~~~d~~~g~~~~~~~~~~~~~r~------~n~~m--hl---~eA~l~l~~~~~~~------------------------ 158 (346)
T PF07221_consen 114 RRFWDPEGGGYRESFDPDWSPPRG------QNPHM--HL---LEAFLALYEATGDP------------------------ 158 (346)
T ss_dssp HHTEETTTTEE--EETTTSSCBEE------HHHHH--HH---HHHHHHHHHHHHHH------------------------
T ss_pred HHhcccccCcceeccCCccccCCC------CChhH--HH---HHHHHHHHHhccCH------------------------
Confidence 9999997 5555566665432100 00000 00 00111111111000
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcc--hh---------------hhcHHHHHHHHHHHHHHHhh
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDD--KV---------------IVSWNGLVISSFARASKILK 555 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~Dd--Ki---------------ltsWNal~I~ALa~A~~~~~ 555 (840)
. -.+.+.++++.+..++.+....+.+-++|+ +. --.-+.=.+|-|.++.+..+
T Consensus 159 ---~-------~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~ 228 (346)
T PF07221_consen 159 ---R-------YLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTG 228 (346)
T ss_dssp ---H-------HHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCH
T ss_pred ---H-------HHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcc
Confidence 0 013344455555555555433333333333 11 12223334677777774333
Q ss_pred hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-cCCCC-CCCCCcchHHHHHHHHHHHHHHcCCH
Q 003187 556 SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDDYAFLISGLLDLYEFGSGT 633 (840)
Q Consensus 556 d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~-~~g~~-~~~~~leDyA~~i~aLl~LYeaTgd~ 633 (840)
. ..+++++.|++++++..++-||++.|+++... .+|.+ ...+.++.++.++.|++.+|+.|+++
T Consensus 229 ~--------------~~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~ 294 (346)
T PF07221_consen 229 R--------------GDPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDE 294 (346)
T ss_dssp C--------------T-HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--H
T ss_pred c--------------ccHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcH
Confidence 2 12789999999999999999999888777663 55655 46688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcccccCCccccCCCCCCccc
Q 003187 634 KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVL 669 (840)
Q Consensus 634 ~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~ 669 (840)
.|++.+.++.+.+.++|.|++.|+||..-..++.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~d~~~G~W~~~l~~dg~~~ 330 (346)
T PF07221_consen 295 KYLDWARRVWDYIFRHFIDPEYGEWFDYLDRDGSPL 330 (346)
T ss_dssp HHHHHHHHHHHHHHHHTB-TTTSSB-SEE-TTS-BS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeeEeeECCCCCCC
Confidence 999999999999999999999999998765555543
No 12
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.70 E-value=4.4e-17 Score=154.23 Aligned_cols=112 Identities=20% Similarity=0.351 Sum_probs=86.0
Q ss_pred CCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHh
Q 003187 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQAL 198 (840)
Q Consensus 119 ~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~ 198 (840)
+.|.|++| ++|+++|++++|||||+|+++||+||+.|+....+.+++.+ ++.+||.|.||.++.+ ....|
T Consensus 1 ~~i~w~~~-~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~-~~~~~------- 70 (117)
T cd02959 1 DHIHWVTL-EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEP-KDEEF------- 70 (117)
T ss_pred CcccceeH-HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCc-hhhhc-------
Confidence 36899987 99999999999999999999999999999998888788766 6779999999876433 33344
Q ss_pred cCCC--CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003187 199 YGGG--GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 199 ~g~~--G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
+.. ++|+++|++|+|+++...+ ..-+.....+|.+.|+.|.+
T Consensus 71 -~~~g~~vPt~~f~~~~Gk~~~~~~--~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 71 -SPDGGYIPRILFLDPSGDVHPEII--NKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred -ccCCCccceEEEECCCCCCchhhc--cCCCCccccccCCCHHHHHh
Confidence 333 4999999999999875311 11122233478888877754
No 13
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.61 E-value=2.1e-15 Score=143.52 Aligned_cols=109 Identities=23% Similarity=0.411 Sum_probs=85.3
Q ss_pred hHHHHHHHHhcC-CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHH------HHHHHHhc
Q 003187 127 GEEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY------MTYVQALY 199 (840)
Q Consensus 127 ~~eAl~~Ak~e~-KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y------~~~~~~~~ 199 (840)
+.+++++|++++ |||+|.|+++||++|+.|+.++++++++.+.++++|+.++||+++.+.+.. | ...+....
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~-~~~~~~~~~~l~~~~ 80 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTD-FDGEALSEKELARKY 80 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeec-cCCCCccHHHHHHHc
Confidence 468999999999 999999999999999999999999999999999899999999986532110 0 00111123
Q ss_pred CCCCCCcEEEECCC-Cceeccc-cccCCCCCCCcccHHHHHHHHH
Q 003187 200 GGGGWPLSVFLSPD-LKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 200 g~~G~P~~vfl~p~-g~~~~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
++.++|+++|++++ |+++... +|.+++ .|.++|+.+.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~------~~~~~l~~~~ 119 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPD------EFLAYLEYVQ 119 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHH------HHHHHHHHHH
Confidence 88999999999999 8887653 565543 6778877764
No 14
>smart00594 UAS UAS domain.
Probab=99.55 E-value=1.4e-14 Score=137.94 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=76.9
Q ss_pred CccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhc
Q 003187 120 PVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY 199 (840)
Q Consensus 120 ~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~ 199 (840)
|.=|...+++|+++|++++|++||+|+++||.+|++|++++|.|++|.++||++||.+++|.+.... ..+++ ..
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~----~~ 82 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQ----FY 82 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHH----hc
Confidence 5556667799999999999999999999999999999999999999999999999999999985432 12221 23
Q ss_pred CCCCCCcEEEECCCC
Q 003187 200 GGGGWPLSVFLSPDL 214 (840)
Q Consensus 200 g~~G~P~~vfl~p~g 214 (840)
+..|+|+++|++|+|
T Consensus 83 ~~~~~P~~~~l~~~~ 97 (122)
T smart00594 83 KLDSFPYVAIVDPRT 97 (122)
T ss_pred CcCCCCEEEEEecCC
Confidence 788999999999997
No 15
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=8.6e-13 Score=145.18 Aligned_cols=296 Identities=16% Similarity=0.128 Sum_probs=219.6
Q ss_pred HHhCCCcccCCCeEEEEecCCCCCCCC-CcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEee
Q 003187 348 MAKGGIHDHVGGGFHRYSVDERWHVPH-FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 426 (840)
Q Consensus 348 Ma~GGi~D~v~GGF~RYsvD~~W~vPH-FEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa 426 (840)
|-..--.|..+||||. ..|.+..+-. -.|.+-.+++++++|+.|+...+.+.++++|.+.++|+.+..++++||+|.+
T Consensus 23 ~w~~~g~d~~~GGffe-~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~ 101 (388)
T COG2942 23 FWLNAGVDTEGGGFFE-ALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYFA 101 (388)
T ss_pred hhcccCcCCCCCCcee-eeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEEE
Confidence 4555667889999997 7777777765 7788999999999999999999888899999999999999999999999999
Q ss_pred ccCCcccccccccccccchhH----H--Hhhhhh--------HHHHHHHhCccC--CCCcCCCCCCCCCCccCCcceeec
Q 003187 427 EDADSAETEGATRKKEGAFYV----E--DILGEH--------AILFKEHYYLKP--TGNCDLSRMSDPHNEFKGKNVLIE 490 (840)
Q Consensus 427 ~DADs~~~~~~~~~~EGayY~----~--~vLg~~--------~~~~~~~y~v~~--~Gn~~~~~~~d~~g~~eg~nvL~~ 490 (840)
+|.|..+.+.+++..--+|-+ . .+.+++ .++..++|-=.. -+-++ ...++......+.+.|+
T Consensus 102 ~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e--~~~~~~~pl~sNp~MHl 179 (388)
T COG2942 102 LDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFWREEHPLGGFE--EDNPGSAPLGSNPHMHL 179 (388)
T ss_pred ecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCccccc--ccCCCCCccCCCcchHH
Confidence 999998888877777666665 1 111122 233333331111 11111 11222222334445555
Q ss_pred cCCchHHHHhcCCC-----HHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHH---------------HHHHHHH
Q 003187 491 LNDSSASASKLGMP-----LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV---------------ISSFARA 550 (840)
Q Consensus 491 ~~~~~~~a~~~g~~-----~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~---------------I~ALa~A 550 (840)
.+. +...+..+ .+.+.++.+.++.++.+.+..+.+-++|.. ||.-- .+-|.+-
T Consensus 180 ~EA---~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d----W~p~~~frg~~~ePGH~fEW~~Lll~~ 252 (388)
T COG2942 180 LEA---MLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD----WNPAHGFRGRGIEPGHQFEWAWLLLDI 252 (388)
T ss_pred HHH---HHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc----CCcCCCcccCCCCCchHHHHHHHHHHH
Confidence 432 22222222 244556777888899999998888888887 64322 3456666
Q ss_pred HHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-cCCCC-CCCCCcchHHHHHHHHHHHHH
Q 003187 551 SKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDDYAFLISGLLDLYE 628 (840)
Q Consensus 551 ~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~-~~g~~-~~~~~leDyA~~i~aLl~LYe 628 (840)
.+..++ ...+..|+++++-.+++-||++.|+++.++ .+|.+ +..+.+++++..+.+++.|++
T Consensus 253 a~~~~~----------------~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~ 316 (388)
T COG2942 253 ARRRGR----------------AWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAE 316 (388)
T ss_pred HHHhch----------------hHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHh
Confidence 666665 578899999999999999999999988775 56665 456889999999999999999
Q ss_pred HcC-CHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccc
Q 003187 629 FGS-GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVL 669 (840)
Q Consensus 629 aTg-d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~ 669 (840)
.|+ ++.|.++...+.+.+..+|.|++.|.+|+--..+...+
T Consensus 317 ~~~~~~~y~~~~~R~~~~~~~hl~d~~~G~W~~~l~~dg~~~ 358 (388)
T COG2942 317 TTGARERYWQWYARAWDYLWWHLDDPEYGLWFDKLDEDGEVL 358 (388)
T ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCcCCcchhhcCCCCcee
Confidence 999 99999999999999999999999999998665554443
No 16
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.53 E-value=1.6e-14 Score=132.94 Aligned_cols=95 Identities=22% Similarity=0.333 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
++++++|.+++|||+|.|+++||++|+.|....++++++++.++++++.++||++++++....++ +. .++.++|++
T Consensus 1 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~---~~-~~i~~~Pti 76 (104)
T cd02953 1 EAALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALL---KR-FGVFGPPTY 76 (104)
T ss_pred CHHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHH---HH-cCCCCCCEE
Confidence 36889999999999999999999999999988889999999998899999999987544333222 22 288999999
Q ss_pred EEECC-CCceecc-ccccCCC
Q 003187 208 VFLSP-DLKPLMG-GTYFPPE 226 (840)
Q Consensus 208 vfl~p-~g~~~~~-~tY~p~~ 226 (840)
+|+++ +|+++.. .+|++.+
T Consensus 77 ~~~~~~~g~~~~~~~G~~~~~ 97 (104)
T cd02953 77 LFYGPGGEPEPLRLPGFLTAD 97 (104)
T ss_pred EEECCCCCCCCcccccccCHH
Confidence 99999 8987764 3566644
No 17
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.49 E-value=2.7e-12 Score=144.59 Aligned_cols=274 Identities=20% Similarity=0.263 Sum_probs=175.2
Q ss_pred HHHHHHHHhcccCC-CCCCCC---CC--CCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCC
Q 003187 286 RLCAEQLSKSYDSR-FGGFGS---AP--KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (840)
Q Consensus 286 ~~~~~~l~~~~D~~-~GGfg~---aP--KFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~G 359 (840)
..++..+.+.|+.. .|++.+ .| ..|.+..+..|..++.+++ +....+++..++..+.... +|.
T Consensus 7 ~~~~~~l~~~y~~~~~g~~~g~~~~~~~~W~~a~~~~~~~d~~~~t~-------d~~y~~~~~~~~~~~~~~~-~~~--- 75 (370)
T PF03663_consen 7 KSAADALQKYYNGNASGNIPGLFPSPYYWWWQAVMLSALIDYYRRTG-------DPTYNDLIQNALLNQRGPN-YDS--- 75 (370)
T ss_dssp -HHHHHHHHHHB-SSTTT-B-SEES--H-HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHT-TSS---
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCcChHHHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHhccc-ccc---
Confidence 34455566778886 555432 22 3556777888888887754 3788999999999887644 110
Q ss_pred eEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHHHHhccCC--CCceEeeccCCcc
Q 003187 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDV-----FYSYICRDILDYLRRDMIGP--GGEIFSAEDADSA 432 (840)
Q Consensus 360 GF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~-----~y~~~A~~t~~fl~r~m~~~--~Ggfysa~DADs~ 432 (840)
|.. . .| ....-.-|||.++.++.+||++|+++ .|++.|+++.+++.+..-.. +||+++..+. +.
T Consensus 76 -~~~---~-~~---~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~-~~ 146 (370)
T PF03663_consen 76 -YNP---S-NG---SGDRYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDD-TN 146 (370)
T ss_dssp -S-----S----------BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET-----
T ss_pred -ccc---c-cc---cccCccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccc-cC
Confidence 110 0 00 01122335999999999999999999 99999999999999544333 3899886421 00
Q ss_pred cccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHH
Q 003187 433 ETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNIL 512 (840)
Q Consensus 433 ~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l 512 (840)
.+ ...||
T Consensus 147 ----------------------------------~~-------------~~~Kn-------------------------- 153 (370)
T PF03663_consen 147 ----------------------------------SG-------------YDYKN-------------------------- 153 (370)
T ss_dssp ----------------------------------TE-------------EEEEE--------------------------
T ss_pred ----------------------------------CC-------------CCccc--------------------------
Confidence 00 01111
Q ss_pred HHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHH-hcc
Q 003187 513 GECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRR-HLY 591 (840)
Q Consensus 513 ~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~-~l~ 591 (840)
+--|++++.+.++.|+++++ +.|++.|+++.+|+.+ +|+
T Consensus 154 ------------------------a~sN~~~~~laarL~~~t~~----------------~~Yl~~A~~~~~W~~~~~L~ 193 (370)
T PF03663_consen 154 ------------------------AISNGPAAQLAARLYRITGD----------------QTYLDWAKKIYDWMRDSGLI 193 (370)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH-HHB
T ss_pred ------------------------ccchHHHHHHHHHHHHhcCC----------------hHHHHHHHHHHHHhhcceeE
Confidence 12489999999999999987 6899999999999999 999
Q ss_pred ccCCCeEEEeec-CC---CCCCCCCcchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcccccCCccccCCCCCC
Q 003187 592 DEQTHRLQHSFR-NG---PSKAPGFLDDYAFLISGLLDLYEFGSGT-KWLVWAIELQNTQDELFLDREGGGYFNTTGEDP 666 (840)
Q Consensus 592 d~~~G~l~~~~~-~g---~~~~~~~leDyA~~i~aLl~LYeaTgd~-~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~ 666 (840)
|+++|.++.... ++ ......+.+.++.+|.|++.||++|+++ .||+.|++|++.+..+|+++.+|-+++..-+.
T Consensus 194 d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~~gil~e~~ce~- 272 (370)
T PF03663_consen 194 DPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINHFFDNGDGILTEEACEP- 272 (370)
T ss_dssp --TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT--EE--------
T ss_pred ECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCCCeeeecccccc-
Confidence 887776655432 22 2345678899999999999999999887 99999999999999998876544455431110
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHHHHhC
Q 003187 667 SVLLRVKEDHDGAEPSGNSVSVINLVRLASIVA 699 (840)
Q Consensus 667 ~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~ 699 (840)
....++-.+.-.+++++.|..|+.+.+
T Consensus 273 ------~~~~~~d~~~Fkgi~~r~L~~l~~~~~ 299 (370)
T PF03663_consen 273 ------SGTCDGDQPLFKGIFARYLADLAQVAP 299 (370)
T ss_dssp ---------SSSGGGGHHHHHHHHHHHHHHHHT
T ss_pred ------CcCcCCccHHHHHHHHHHHHHHHHHCc
Confidence 111344567888999999999999985
No 18
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=7.8e-12 Score=145.58 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=128.3
Q ss_pred CcchHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHHHhhhh
Q 003187 375 FEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGE 453 (840)
Q Consensus 375 FEKMLYD-NA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~ 453 (840)
-+|+|-| |++||.+++.|+++++++.|.++|+++.+||.++|+.. .+....
T Consensus 405 Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~~~~-------------------------- 456 (667)
T COG1331 405 DDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLLRRY-------------------------- 456 (667)
T ss_pred CcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chheee--------------------------
Confidence 3477888 99999999999999999999999999999999999863 333210
Q ss_pred hHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 003187 454 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDD 533 (840)
Q Consensus 454 ~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~Dd 533 (840)
++|.. -..+.++|
T Consensus 457 ----------------------------~~G~a---------------------------------------~~~g~leD 469 (667)
T COG1331 457 ----------------------------RGGEA---------------------------------------AVAGLLED 469 (667)
T ss_pred ----------------------------ecCcc---------------------------------------cccccchh
Confidence 01110 01345678
Q ss_pred hhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC-------
Q 003187 534 KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP------- 606 (840)
Q Consensus 534 KiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~------- 606 (840)
+ +++|+||..+|+++++ .+||+.|+++++-+.++|||++ |||+.+..+++
T Consensus 470 Y------A~~i~gll~lye~t~d----------------~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~l~ir~~ 526 (667)
T COG1331 470 Y------AFLILGLLALYEATGD----------------LAYLEKAIELADEAIADFWDDE-GGFYDTPSDSEDLLIRPK 526 (667)
T ss_pred H------HHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHHhcCCC-CCcccCCCcccccccCCC
Confidence 8 9999999999999988 7899999999999999999987 66877543322
Q ss_pred -CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003187 607 -SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 650 (840)
Q Consensus 607 -~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F 650 (840)
....++.+.||.++.+|+.|..+|++.+|++.|.++++.+-.+.
T Consensus 527 ~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~ 571 (667)
T COG1331 527 EPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA 571 (667)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 23357889999999999999999999999999999997765443
No 19
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.43 E-value=4.2e-13 Score=158.73 Aligned_cols=113 Identities=20% Similarity=0.332 Sum_probs=89.7
Q ss_pred CCccCccch-----HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH
Q 003187 119 NPVDWFAWG-----EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT 193 (840)
Q Consensus 119 ~~v~W~~~~-----~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~ 193 (840)
+.+.|+++. ++++++|+++||||+|+|+++||++|++|++.+|+|++|++.++ +|+.++||.+++.+-.+.+++
T Consensus 450 ~~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~ 528 (571)
T PRK00293 450 AHLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLK 528 (571)
T ss_pred cCCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHH
Confidence 456787653 78899999999999999999999999999999999999999996 799999999875433333322
Q ss_pred HHHHhcCCCCCCcEEEECCCCceec--c-ccccCCCCCCCcccHHHHHHHHH
Q 003187 194 YVQALYGGGGWPLSVFLSPDLKPLM--G-GTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 194 ~~~~~~g~~G~P~~vfl~p~g~~~~--~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
. .++.|+|+++|++++|+++. . .+|.+++ .|.+.|+++.
T Consensus 529 ---~-~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~------~f~~~L~~~~ 570 (571)
T PRK00293 529 ---H-YNVLGLPTILFFDAQGQEIPDARVTGFMDAA------AFAAHLRQLQ 570 (571)
T ss_pred ---H-cCCCCCCEEEEECCCCCCcccccccCCCCHH------HHHHHHHHhc
Confidence 2 38899999999999999853 2 3556544 6777777653
No 20
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.35 E-value=1.7e-12 Score=149.06 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=81.2
Q ss_pred ccCccchHH-HHHHHHhcCC--CEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHH
Q 003187 121 VDWFAWGEE-AFAEARKRDV--PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (840)
Q Consensus 121 v~W~~~~~e-Al~~Ak~e~K--pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~ 197 (840)
..|+++.++ .++.+.+++| ||||+||||||..||+||+.||+|++|+..+. ++|.+|+|++++...+...++.
T Consensus 454 ~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~--- 529 (569)
T COG4232 454 EFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKR--- 529 (569)
T ss_pred hhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHH---
Confidence 567999877 8999988888 99999999999999999999999999999885 9999999999765544444433
Q ss_pred hcCCCCCCcEEEECCCCceecc
Q 003187 198 LYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 198 ~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.|+-|.|+++|++++|++...
T Consensus 530 -~~~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 530 -LGVFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred -cCCCCCCEEEEECCCCCcCcC
Confidence 378899999999999987665
No 21
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.28 E-value=7.5e-13 Score=122.89 Aligned_cols=98 Identities=32% Similarity=0.477 Sum_probs=72.2
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHH-------------HHHHHHHHhcC
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK-------------VYMTYVQALYG 200 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~-------------~y~~~~~~~~g 200 (840)
|++++||++|.|+.+||++|+.|++++++++++...++++|..|.++.++..+... .-.+..+. .|
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 79 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQR-YG 79 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHH-TT
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHH-cC
Confidence 67899999999999999999999999999999999998899999999875332111 11223343 49
Q ss_pred CCCCCcEEEECCCCceecc-ccccCCCCCCCcccHHHHH
Q 003187 201 GGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTIL 238 (840)
Q Consensus 201 ~~G~P~~vfl~p~g~~~~~-~tY~p~~~~~~~~~f~~~L 238 (840)
+.|+|+++|+|++|+++.. .||.+++ .|+++|
T Consensus 80 v~gtPt~~~~d~~G~~v~~~~G~~~~~------~l~~~L 112 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYRIPGYLSPE------ELLKML 112 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEESS--HH------HHHHHH
T ss_pred CCccCEEEEEcCCCCEEEEecCCCCHH------HHHhhC
Confidence 9999999999999998864 4677765 566554
No 22
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.22 E-value=4.2e-11 Score=113.38 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=78.9
Q ss_pred hHHHHHHHHhcCCCEEEEEecc----CChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003187 127 GEEAFAEARKRDVPIFLSIGYS----TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~----wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~ 202 (840)
++||++.||++.|++||+++++ ||.+| +++|.||+|.++||++||.+..|++.. +- + +..+.+ +..
T Consensus 6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc----~~~l~~~~v~~~ln~~fv~w~~dv~~~-eg---~-~la~~l-~~~ 75 (116)
T cd02991 6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFC----RNTLCAPEVIEYINTRMLFWACSVAKP-EG---Y-RVSQAL-RER 75 (116)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCccHHHHH----HHHcCCHHHHHHHHcCEEEEEEecCCh-HH---H-HHHHHh-CCC
Confidence 5899999999999999999999 66666 789999999999999999999999854 32 1 222222 788
Q ss_pred CCCcEEEECCCC---ceecc-ccccCCCCCCCcccHHHHHHHHHH
Q 003187 203 GWPLSVFLSPDL---KPLMG-GTYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 203 G~P~~vfl~p~g---~~~~~-~tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
++|+.+|+.|.. +++.. .||.+++ .|+..|..+.+
T Consensus 76 ~~P~~~~l~~~~~~~~vv~~i~G~~~~~------~ll~~L~~~~~ 114 (116)
T cd02991 76 TYPFLAMIMLKDNRMTIVGRLEGLIQPE------DLINRLTFIMD 114 (116)
T ss_pred CCCEEEEEEecCCceEEEEEEeCCCCHH------HHHHHHHHHHh
Confidence 999999996543 34443 3677776 67777777653
No 23
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.16 E-value=1.3e-09 Score=122.96 Aligned_cols=217 Identities=15% Similarity=0.145 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHH
Q 003187 380 YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFK 459 (840)
Q Consensus 380 YDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~ 459 (840)
.-+|.++.++.++|++++|+.|.+.+.+++.+......+ .|...
T Consensus 36 W~~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~---~~~~~--------------------------------- 79 (370)
T PF03663_consen 36 WWQAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNYD---SYNPS--------------------------------- 79 (370)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTS---SS--S---------------------------------
T ss_pred ChHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhccccc---ccccc---------------------------------
Confidence 789999999999999999999999999999988765411 01100
Q ss_pred HHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcH
Q 003187 460 EHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSW 539 (840)
Q Consensus 460 ~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsW 539 (840)
+ + ....+.||.
T Consensus 80 ---------~--------------~-----------------------------------------~~~~~~DD~----- 90 (370)
T PF03663_consen 80 ---------N--------------G-----------------------------------------SGDRYYDDN----- 90 (370)
T ss_dssp ----------------------------------------------------------------------BHHHH-----
T ss_pred ---------c--------------c-----------------------------------------cccCccChH-----
Confidence 0 0 001245776
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEeecCCC-CCCCCCcchH
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHSFRNGP-SKAPGFLDDY 616 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~--G~l~~~~~~g~-~~~~~~leDy 616 (840)
+.++.|+.+||+++++.+ ...++||+.|+++++++. ..||++. ||+++...+-. ...-+-.--.
T Consensus 91 -aw~~la~l~aye~t~~~~-----------~~~~~yL~~A~~i~~~~~-~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN 157 (370)
T PF03663_consen 91 -AWWALALLRAYELTGDQP-----------SDNPKYLDLAKEIFDFLI-SGWDDTSCGGGIWWSIDDTNSGYDYKNAISN 157 (370)
T ss_dssp -HHHHHHHHHHHHHH--H----------------HHHHHHHHHHHHHH-HTB-SGG-GS-BEEET----TEEEEEEHHHH
T ss_pred -HHHHHHHHHHHHhhCCCc-----------chHHHHHHHHHHHHHHHH-HhcCCccCCCCccccccccCCCCCcccccch
Confidence 889999999999999821 011399999999999999 7788764 88887621100 0111122345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHH
Q 003187 617 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLA 695 (840)
Q Consensus 617 A~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~-~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~ 695 (840)
+-++...++||++|+|+.||++|+++.+.+.+ .++|++.|.+++.-.....= .......-..-.++++..+..|+
T Consensus 158 ~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c----~~~~~~~~TYNqG~~l~a~~~Ly 233 (370)
T PF03663_consen 158 GPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNC----TNINKTKWTYNQGVFLGAAAYLY 233 (370)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-----B-TT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCC----CcCCCceechHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999 99998888888753211100 00111122234568999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHHH
Q 003187 696 SIVAGSKSDYYRQNAEHSLAVFETR 720 (840)
Q Consensus 696 ~lt~~~~~~~y~~~A~~~l~~~~~~ 720 (840)
+.|+++ ..|+++|+++++.....
T Consensus 234 ~~T~~~--~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 234 NATNDE--QTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHH--H---HHHHHHHHHHHHHHHH
T ss_pred HhcCCc--cHHHHHHHHHHHHHHHH
Confidence 999751 38999999999887554
No 24
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.8e-10 Score=111.51 Aligned_cols=117 Identities=18% Similarity=0.278 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC-CccH--------HHHHHHHHHHh
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-RPDV--------DKVYMTYVQAL 198 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee-~pd~--------~~~y~~~~~~~ 198 (840)
-++.+.|..++|-+|+.|+...|.+|..|.+++|+++++++++..||+.+.+|.+. .|-+ ...+.+.+|.+
T Consensus 32 ~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf 111 (182)
T COG2143 32 FDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF 111 (182)
T ss_pred HHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHh
Confidence 57888999999999999999999999999999999999999999999999999853 2211 11233444444
Q ss_pred cCCCCCCcEEEECCCCceecc-ccccCCCCCCCcccHHHHHHHHHHHHHHcHHH
Q 003187 199 YGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVKDAWDKKRDM 251 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~-~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~ 251 (840)
++.++|++||.|.+|+-|.. -||+||+ .|+.+|+-|++...++-..
T Consensus 112 -~vrstPtfvFfdk~Gk~Il~lPGY~ppe------~Fl~vlkYVa~g~ykd~~~ 158 (182)
T COG2143 112 -AVRSTPTFVFFDKTGKTILELPGYMPPE------QFLAVLKYVADGKYKDTKT 158 (182)
T ss_pred -ccccCceEEEEcCCCCEEEecCCCCCHH------HHHHHHHHHHHHHHhhhcc
Confidence 89999999999999998865 5899998 7999999998877655443
No 25
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.05 E-value=4e-10 Score=110.34 Aligned_cols=84 Identities=20% Similarity=0.212 Sum_probs=60.7
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC--eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW--FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~--FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+++|.+.+|||+|.|+++||++|+.|.... + ++++.++.. ||.|.||.++.+++.+.| ++.|+|++
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l-~--~l~~~~~~~~~~v~v~vd~~~~~~~~~~~--------~V~~iPt~ 80 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDV-A--KLKQKYGDQVNFVMLNVDNPKWLPEIDRY--------RVDGIPHF 80 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHH-H--HHHHHhccCeeEEEEEcCCcccHHHHHHc--------CCCCCCEE
Confidence 4567778999999999999999999997633 2 355555544 555555544334444433 89999999
Q ss_pred EEECCCCceeccc-cccC
Q 003187 208 VFLSPDLKPLMGG-TYFP 224 (840)
Q Consensus 208 vfl~p~g~~~~~~-tY~p 224 (840)
+|++++|+++... ++.+
T Consensus 81 v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 81 VFLDREGNEEGQSIGLQP 98 (142)
T ss_pred EEECCCCCEEEEEeCCCC
Confidence 9999999988653 4444
No 26
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.99 E-value=1.6e-09 Score=102.04 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=62.5
Q ss_pred HHHHHHHh--cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 129 EAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 129 eAl~~Ak~--e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
++++.+-+ .++||+|+|+++||+.|+.|+. +| +++++.+......++||+++.|++.+.| ++.+.||
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P-~l--e~la~~~~~~v~f~kVDvD~~~~la~~~--------~V~~iPT 71 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDE-VL--AKIAEDVSNFAVIYLVDIDEVPDFNKMY--------ELYDPPT 71 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHccCceEEEEEECCCCHHHHHHc--------CCCCCCE
Confidence 45666654 6899999999999999999975 33 4455555444567899999999999887 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|+- +|+.+..
T Consensus 72 f~~fk-~G~~v~~ 83 (114)
T cd02954 72 VMFFF-RNKHMKI 83 (114)
T ss_pred EEEEE-CCEEEEE
Confidence 99887 6777654
No 27
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=98.91 E-value=9.2e-09 Score=115.58 Aligned_cols=195 Identities=15% Similarity=0.162 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCc-chHHH-HHHHHHHHHHHHHccCC-hHHHHHHHHHHHH
Q 003187 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFE-KMLYD-QGQLANVYLDAFSLTKD-VFYSYICRDILDY 411 (840)
Q Consensus 335 ~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFE-KMLYD-NA~Ll~~ya~Ay~~tgd-~~y~~~A~~t~~f 411 (840)
++.++....+.+.+.. +++| =.-||.. ||+.. |+++|..|+.++++++. |.|.+.|...++|
T Consensus 473 e~~kkll~e~~e~L~~--aR~k-------------RPkPHLDsKii~sWnGLviSgl~kag~~~~a~~~y~~~a~~~a~f 537 (786)
T KOG2244|consen 473 EKYKKLLGECREKLFD--ARLK-------------RPKPHLDSKIIVSWNGLVISGLAKAGKILKAEPEYTKYAFPVANF 537 (786)
T ss_pred HHHHHHHHHHHHHHHH--Hhhc-------------CCCCCccchheeeccchhhHHHHHHHHHhhcCHHHHHHHHHHHhh
Confidence 3555666666666554 3332 2459966 99998 99999999999999874 5999999999999
Q ss_pred HHHhccCCCCc-eEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeec
Q 003187 412 LRRDMIGPGGE-IFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIE 490 (840)
Q Consensus 412 l~r~m~~~~Gg-fysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~ 490 (840)
+.++|.++.-+ |... .-| +. +.|. .+..
T Consensus 538 l~k~m~d~~eklliR~-----------------scY----------------~g-a~g~------------ve~~----- 566 (786)
T KOG2244|consen 538 LPKDMIDVAEKLLIRG-----------------SCY----------------DG-ASGR------------VEHS----- 566 (786)
T ss_pred hhhhhhchhhhheeec-----------------ccc----------------cC-CCcc------------eecc-----
Confidence 99999886532 2220 011 11 1111 1111
Q ss_pred cCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC
Q 003187 491 LNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS 570 (840)
Q Consensus 491 ~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~ 570 (840)
.|.-+...|+||+ |++|.+|.+.|++.++
T Consensus 567 -------------------------------n~~~~~~~FldDY------AFlI~gLLDlYea~~~-------------- 595 (786)
T KOG2244|consen 567 -------------------------------NRPSKAPAFLDDY------AFLISGLLDLYEAGGG-------------- 595 (786)
T ss_pred -------------------------------CCccccchhhhhH------HHHHHHHHHHHHccCc--------------
Confidence 1123445699999 9999999999999987
Q ss_pred ChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcc--------hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003187 571 DRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLD--------DYAFLISGLLDLYEFGSGTKWLVWAIEL 642 (840)
Q Consensus 571 ~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~le--------DyA~~i~aLl~LYeaTgd~~yL~~A~~L 642 (840)
.+||+.|+++.+--...||| +|+++-+-.++.......-+ ..+..+..|+.|+.+++.+.|++.|..|
T Consensus 596 --~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl~ka~~l 671 (786)
T KOG2244|consen 596 --IEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYLNKAHRL 671 (786)
T ss_pred --hHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 68999999999999999998 67788775554433333333 4478889999999999999999999999
Q ss_pred HHHHHHHc
Q 003187 643 QNTQDELF 650 (840)
Q Consensus 643 ~~~~~~~F 650 (840)
+..+.++.
T Consensus 672 l~~fseRl 679 (786)
T KOG2244|consen 672 LAVFSERL 679 (786)
T ss_pred HHHHHHHh
Confidence 98877654
No 28
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.91 E-value=2.6e-09 Score=97.21 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=64.4
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
.+.+|||+|.|+++||++|+.|.... .++++.++.++..+++|.++.+++...| ++.++|+++|+. +|
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~~~l~~~~--------~v~~vPt~~i~~-~g 77 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDEDQEIAEAA--------GIMGTPTVQFFK-DK 77 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHHC--------CCeeccEEEEEE-CC
Confidence 56899999999999999999998743 5678888778999999999888876655 889999999995 78
Q ss_pred ceeccc-cccC
Q 003187 215 KPLMGG-TYFP 224 (840)
Q Consensus 215 ~~~~~~-tY~p 224 (840)
+.+... ++.+
T Consensus 78 ~~v~~~~g~~~ 88 (97)
T cd02949 78 ELVKEISGVKM 88 (97)
T ss_pred eEEEEEeCCcc
Confidence 887653 3444
No 29
>PRK10996 thioredoxin 2; Provisional
Probab=98.90 E-value=4.7e-09 Score=102.37 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=70.6
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
..+.++.+.+++|+|+|.|+++||+.|+.|.. .| .++++.++.++..++||.++.+++.+.| ++.|+|+
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~V~~~Pt 109 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAERELSARF--------RIRSIPT 109 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCCHHHHHhc--------CCCccCE
Confidence 35677778888999999999999999999976 56 4477778888999999999988877666 8999999
Q ss_pred EEEECCCCceecc-ccccC
Q 003187 207 SVFLSPDLKPLMG-GTYFP 224 (840)
Q Consensus 207 ~vfl~p~g~~~~~-~tY~p 224 (840)
++|+. +|+++.. .++.+
T Consensus 110 lii~~-~G~~v~~~~G~~~ 127 (139)
T PRK10996 110 IMIFK-NGQVVDMLNGAVP 127 (139)
T ss_pred EEEEE-CCEEEEEEcCCCC
Confidence 99885 8998754 23444
No 30
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.89 E-value=2.9e-09 Score=103.99 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
++++.. +++|||+|+|+++||+.|+.|+. +| +++++.+.+....+|||+++.|++.+.| ++.+.|++
T Consensus 15 d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p-~l--~~la~~~~~~~~~~kVDVDe~~dla~~y--------~I~~~~t~ 81 (142)
T PLN00410 15 DQAILA--EEERLVVIRFGHDWDETCMQMDE-VL--ASVAETIKNFAVIYLVDITEVPDFNTMY--------ELYDPCTV 81 (142)
T ss_pred HHHHHh--cCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHcCCceEEEEEECCCCHHHHHHc--------CccCCCcE
Confidence 444442 37999999999999999999986 44 5677777544555999999999999887 78888888
Q ss_pred EEECCCCc-eeccccc
Q 003187 208 VFLSPDLK-PLMGGTY 222 (840)
Q Consensus 208 vfl~p~g~-~~~~~tY 222 (840)
+|+-.+|+ .+..++.
T Consensus 82 ~~ffk~g~~~vd~~tG 97 (142)
T PLN00410 82 MFFFRNKHIMIDLGTG 97 (142)
T ss_pred EEEEECCeEEEEEecc
Confidence 86667787 6655443
No 31
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.89 E-value=5.5e-08 Score=106.78 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=124.7
Q ss_pred hhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCc
Q 003187 534 KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFL 613 (840)
Q Consensus 534 KiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~l 613 (840)
-++....| ++.+|...++. ++ ++|++.|++++++|.+...+.+ ..+.+.++.....++.
T Consensus 80 dl~~G~aG-~~~~ll~l~~~-~~----------------~~~l~~a~~~~~~l~~~~~~~~---~~~~~~~~~~~~~G~~ 138 (321)
T cd04791 80 DLASGLAG-IGLALLYFART-GD----------------PALLEAAAKIAELLAEALERGD---PALLWPDFDRVDHGLL 138 (321)
T ss_pred ccccchHH-HHHHHHHHHhc-CC----------------hHHHHHHHHHHHHHHHHhhccc---cccccccCCCCCCccc
Confidence 45667777 45566777777 76 7899999999999998876522 2234445555667999
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 003187 614 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 693 (840)
Q Consensus 614 eDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~Llr 693 (840)
+++|-++.+|+.+|++|+|++|++.|+++.+.+.++|.+.+ ++++++..... .....++|++-++.+|++
T Consensus 139 hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~-~g~~~~~~~~~---------~~~~wchG~aGi~~~l~~ 208 (321)
T cd04791 139 HGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDD-GGLLQVDEGAR---------LLPYLCSGSAGLGLLMLR 208 (321)
T ss_pred cCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCC-CCceEcCCCCc---------cCcccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999997654 55665432211 123679999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 003187 694 LASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 726 (840)
Q Consensus 694 L~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 726 (840)
+++++++ ++|++.++++++.+......+|.
T Consensus 209 l~~~~~d---~~~~~~a~~~~~~~~~~~~~~~~ 238 (321)
T cd04791 209 LEAITGD---KRWRDEADGIAHAALSSCYANPG 238 (321)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhhhhccCcc
Confidence 9999975 78999999999998876655554
No 32
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.86 E-value=5.9e-09 Score=94.12 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=60.4
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
..+|||+|.|+++||+.|+.|... + .++++.+...+..++||.++.+++.+.| ++.++|+++|++ +|+
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~~~-~g~ 77 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPL-L--ERLAEEYQGQFVLAKVNCDAQPQIAQQF--------GVQALPTVYLFA-AGQ 77 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhCCcEEEEEEeccCCHHHHHHc--------CCCCCCEEEEEe-CCE
Confidence 448999999999999999999874 3 5677777767889999999988877665 889999999997 888
Q ss_pred eecc
Q 003187 216 PLMG 219 (840)
Q Consensus 216 ~~~~ 219 (840)
++..
T Consensus 78 ~~~~ 81 (96)
T cd02956 78 PVDG 81 (96)
T ss_pred Eeee
Confidence 7643
No 33
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.80 E-value=1.6e-08 Score=93.17 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.++.+.++++||+|.|+++||+.|+.|.. .| .++++.+.. ....++||.+ .+++.+.| ++.+.|+
T Consensus 7 ~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p-~l--~~~~~~~~~~~~~~~~vd~d-~~~~~~~~--------~v~~~Pt 74 (102)
T cd02948 7 QEEWEELLSNKGLTVVDVYQEWCGPCKAVVS-LF--KKIKNELGDDLLHFATAEAD-TIDTLKRY--------RGKCEPT 74 (102)
T ss_pred HHHHHHHHccCCeEEEEEECCcCHhHHHHhH-HH--HHHHHHcCCCcEEEEEEeCC-CHHHHHHc--------CCCcCcE
Confidence 5677778888999999999999999999986 45 446666654 3567888888 56655554 8999998
Q ss_pred EEEECCCCceeccc
Q 003187 207 SVFLSPDLKPLMGG 220 (840)
Q Consensus 207 ~vfl~p~g~~~~~~ 220 (840)
++|+. +|+++...
T Consensus 75 ~~~~~-~g~~~~~~ 87 (102)
T cd02948 75 FLFYK-NGELVAVI 87 (102)
T ss_pred EEEEE-CCEEEEEE
Confidence 88875 88877553
No 34
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.77 E-value=1.9e-08 Score=90.73 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=61.5
Q ss_pred HHHHHHhc--CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 130 AFAEARKR--DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 130 Al~~Ak~e--~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
-++.+..+ +|+|+|.|+++||++|+.|.. +| .++++.++.++..++||.++.+++.+.| ++.+.|++
T Consensus 4 ~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~-~l--~~l~~~~~~~i~~~~vd~~~~~~~~~~~--------~i~~~Pt~ 72 (97)
T cd02984 4 EFEELLKSDASKLLVLHFWAPWAEPCKQMNQ-VF--EELAKEAFPSVLFLSIEAEELPEISEKF--------EITAVPTF 72 (97)
T ss_pred HHHHHHhhCCCCEEEEEEECCCCHHHHHHhH-HH--HHHHHHhCCceEEEEEccccCHHHHHhc--------CCccccEE
Confidence 34444333 599999999999999999976 45 3555555668999999999888877666 88999999
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+|+. +|+++..
T Consensus 73 ~~~~-~g~~~~~ 83 (97)
T cd02984 73 VFFR-NGTIVDR 83 (97)
T ss_pred EEEE-CCEEEEE
Confidence 9995 7888754
No 35
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.74 E-value=2e-08 Score=92.47 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=59.4
Q ss_pred chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003187 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (840)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~ 202 (840)
+++++++++++ +++++|.|+++||+.|+.|.. .|+ ++++.++. ++...++|.++.+++.+.| ++.
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~I~ 71 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATAYSSIASEF--------GVR 71 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECccCHhHHhhc--------CCc
Confidence 35788888755 789999999999999999987 554 56666642 4778889998888776655 889
Q ss_pred CCCcEEEEC
Q 003187 203 GWPLSVFLS 211 (840)
Q Consensus 203 G~P~~vfl~ 211 (840)
++|+++|+.
T Consensus 72 ~~Pt~~l~~ 80 (104)
T cd03000 72 GYPTIKLLK 80 (104)
T ss_pred cccEEEEEc
Confidence 999999995
No 36
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.73 E-value=1.4e-08 Score=95.33 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
++++..+ ++|+|+|+|+++||+.|+.|+. .| .++++.+.+..+.+|||+++.|++.+.| ++...|++
T Consensus 6 d~~i~~~--~~klVVVdF~a~WC~pCk~mdp-~l--~ela~~~~~~~~f~kVDVDev~dva~~y--------~I~amPtf 72 (114)
T cd02986 6 DQAIKST--AEKVLVLRFGRDEDAVCLQLDD-IL--SKTSHDLSKMASIYLVDVDKVPVYTQYF--------DISYIPST 72 (114)
T ss_pred HHHHHhc--CCCEEEEEEeCCCChhHHHHHH-HH--HHHHHHccCceEEEEEeccccHHHHHhc--------CceeCcEE
Confidence 5566655 7999999999999999999975 33 4555555433788999999999999887 77889999
Q ss_pred EEECCCCce
Q 003187 208 VFLSPDLKP 216 (840)
Q Consensus 208 vfl~p~g~~ 216 (840)
+|+- +|+-
T Consensus 73 vffk-ngkh 80 (114)
T cd02986 73 IFFF-NGQH 80 (114)
T ss_pred EEEE-CCcE
Confidence 9664 3443
No 37
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.73 E-value=3.7e-08 Score=90.95 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=52.6
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
.+|+|+|.|+++||+.|+.|.. .|+ ++++.. .+++.++||.++.++... +++. .++.|+||++|+ .+|+.
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p-~l~--~la~~~-~~v~~~~vd~d~~~~~~~----l~~~-~~V~~~Pt~~~~-~~G~~ 83 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYP-TMV--KLSRTC-NDVVFLLVNGDENDSTME----LCRR-EKIIEVPHFLFY-KDGEK 83 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhH-HHH--HHHHHC-CCCEEEEEECCCChHHHH----HHHH-cCCCcCCEEEEE-eCCeE
Confidence 3999999999999999999864 332 234444 468889999987653211 1111 289999998888 78988
Q ss_pred ecc
Q 003187 217 LMG 219 (840)
Q Consensus 217 ~~~ 219 (840)
+..
T Consensus 84 v~~ 86 (103)
T cd02985 84 IHE 86 (103)
T ss_pred EEE
Confidence 754
No 38
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.72 E-value=4.5e-08 Score=88.54 Aligned_cols=78 Identities=23% Similarity=0.389 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
++.++++.+++++++|.|+++||+.|+.|.. .| .++++.+.. ++..+++|.++.+++.+.| ++.++|
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~-~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~i~~~P 71 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAP-EY--EKLAKELKGDPDIVLAKVDATAEKDLASRF--------GVSGFP 71 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhCh-HH--HHHHHHhccCCceEEEEEEccchHHHHHhC--------CCCcCC
Confidence 3566666668999999999999999999965 44 457777776 6999999999888776655 889999
Q ss_pred cEEEECCCCce
Q 003187 206 LSVFLSPDLKP 216 (840)
Q Consensus 206 ~~vfl~p~g~~ 216 (840)
+++|+++++.+
T Consensus 72 ~~~~~~~~~~~ 82 (102)
T TIGR01126 72 TIKFFPKGKKP 82 (102)
T ss_pred EEEEecCCCcc
Confidence 99999998763
No 39
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=98.69 E-value=7.9e-07 Score=98.95 Aligned_cols=152 Identities=21% Similarity=0.325 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeec-CCCCCCCC--CcchHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPSKAPG--FLDDYA 617 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~-~g~~~~~~--~leDyA 617 (840)
.|.+..|+.++..++| ++|++.|.+-+....++++|+++|.++|.+. +|...... ..=.++
T Consensus 127 ~M~~p~l~~~~~~tgd----------------~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~g 190 (336)
T PF07470_consen 127 YMNLPFLAWAGKLTGD----------------PKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNG 190 (336)
T ss_dssp HHHHHHHHHHHHHHTG----------------HHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHH
T ss_pred cccHHHHHHHHHHHCC----------------cHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhh
Confidence 4567899999999998 7999999999999999999999999998864 34332222 445889
Q ss_pred HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 003187 618 FLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 692 (840)
Q Consensus 618 ~~i~aLl~LYeaTgd-----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~Ll 692 (840)
+++.|++++|+.+.+ +.+++.++++++.+. .+.+ +.|.++....+ +. .......|+.++++..|+
T Consensus 191 W~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~-~~q~-~~G~w~~~~~~-~~-------~~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 191 WAIYGLAEVLEYLPEDHPERDELLEIAKKLADALA-RYQD-EDGLWYQDLDD-PD-------PGNYRETSATAMFAYGLL 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-TTST-TTSBEBSBTTT-TT-------TTS-BEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-hcCC-CCCCcceecCC-CC-------CCCcccHHHHHHHHHHHH
Confidence 999999999999855 677788888887754 4556 45555443321 11 011234588999999998
Q ss_pred H-HHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003187 693 R-LASIVAGSKSDYYRQNAEHSLAVFETR 720 (840)
Q Consensus 693 r-L~~lt~~~~~~~y~~~A~~~l~~~~~~ 720 (840)
+ +..-.. +.+.|++.|++.++.+...
T Consensus 261 ~gi~~g~~--d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 261 RGIRLGLL--DPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHHTTSS--THHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCC--ccHHHHHHHHHHHHHHHhC
Confidence 7 333222 2478999999988887766
No 40
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=2.1e-06 Score=95.39 Aligned_cols=153 Identities=19% Similarity=0.209 Sum_probs=113.0
Q ss_pred hhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC--eEEEeecCCCCCCCCCc
Q 003187 536 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH--RLQHSFRNGPSKAPGFL 613 (840)
Q Consensus 536 ltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G--~l~~~~~~g~~~~~~~l 613 (840)
=.+-.++++-|++.+..+.. ++..++-..+.+.+.+++++++++ ++-. .+++. .+--.
T Consensus 114 d~Y~haFallA~A~~a~a~~-----------------~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~-~~~~~--~pl~s 173 (388)
T COG2942 114 DLYGHAFALLAAAHAATAGP-----------------PRADELLDEALDVLERRFWREEHPLGGFEE-DNPGS--APLGS 173 (388)
T ss_pred hHHHHHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHHHHHHhhhcCCcccccc-cCCCC--CccCC
Confidence 33456899999999887754 566677778888888999987653 2221 22222 22356
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCc---cccCCCCCCccccccccCCCCCCCChHHHHHHH
Q 003187 614 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVIN 690 (840)
Q Consensus 614 eDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~ 690 (840)
+.++++.+|+|..|++|++..|++.|.+|++.+..+|.|.++|. +|+..++ +....| . -+.+|.+...+++.
T Consensus 174 Np~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~-p~~~fr--g--~~~ePGH~fEW~~L 248 (388)
T COG2942 174 NPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWN-PAHGFR--G--RGIEPGHQFEWAWL 248 (388)
T ss_pred CcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCC-cCCCcc--c--CCCCCchHHHHHHH
Confidence 88899999999999999999999999999999999999999885 6665541 111112 1 25689999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHH
Q 003187 691 LVRLASIVAGSKSDYYRQNAEHSLAV 716 (840)
Q Consensus 691 LlrL~~lt~~~~~~~y~~~A~~~l~~ 716 (840)
|+++++..++ ......|+.+...
T Consensus 249 ll~~a~~~~~---~~l~~~A~~lf~~ 271 (388)
T COG2942 249 LLDIARRRGR---AWLIEAARRLFDI 271 (388)
T ss_pred HHHHHHHhch---hHHHHHHHHHHHH
Confidence 9999999875 4455566555444
No 41
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.67 E-value=5.1e-08 Score=89.13 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+-+++..+++|+++|.|+++||+.|+.|.. .|. ++++.+...+..++||.++.+++.+.| ++.++|++
T Consensus 8 ~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~ 76 (101)
T cd03003 8 RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAP-TWR--EFAKEMDGVIRIGAVNCGDDRMLCRSQ--------GVNSYPSL 76 (101)
T ss_pred HhhHHHHhcCCCeEEEEEECCCChHHHHhHH-HHH--HHHHHhcCceEEEEEeCCccHHHHHHc--------CCCccCEE
Confidence 3455666677899999999999999999986 444 567778777888999999888776655 88999999
Q ss_pred EEECCCCceec
Q 003187 208 VFLSPDLKPLM 218 (840)
Q Consensus 208 vfl~p~g~~~~ 218 (840)
+++ ++|+++.
T Consensus 77 ~~~-~~g~~~~ 86 (101)
T cd03003 77 YVF-PSGMNPE 86 (101)
T ss_pred EEE-cCCCCcc
Confidence 998 6787643
No 42
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.67 E-value=7.2e-08 Score=89.77 Aligned_cols=78 Identities=19% Similarity=0.361 Sum_probs=60.8
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCc
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~-pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
+++..+++++||+||.|+++||+.|+.|... | .++++.+.. +++..+||.+.. .++.. ...++.++|+
T Consensus 12 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~~~~~~~-------~~~~v~~~Pt 81 (109)
T cd02993 12 EALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGEQREFAK-------EELQLKSFPT 81 (109)
T ss_pred HHHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCccchhhHH-------hhcCCCcCCE
Confidence 5666777889999999999999999999874 5 457777875 599999999863 33322 1138899999
Q ss_pred EEEECCCCce
Q 003187 207 SVFLSPDLKP 216 (840)
Q Consensus 207 ~vfl~p~g~~ 216 (840)
++|++++++.
T Consensus 82 i~~f~~~~~~ 91 (109)
T cd02993 82 ILFFPKNSRQ 91 (109)
T ss_pred EEEEcCCCCC
Confidence 9999887654
No 43
>PHA02278 thioredoxin-like protein
Probab=98.65 E-value=5.8e-08 Score=90.08 Aligned_cols=84 Identities=8% Similarity=0.059 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC----ccHHHHHHHHHHHhcCCCCC
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER----PDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~----pd~~~~y~~~~~~~~g~~G~ 204 (840)
+-|++..++++||+|+|+|+||+.|+.|.. +|+ ++++..+.....++||+++. +++.+.| ++.|+
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p-~l~--~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~--------~I~~i 73 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKS-VIP--MFQESGDIKKPILTLNLDAEDVDREKAVKLF--------DIMST 73 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHH-HHH--HHHhhhcCCceEEEEECCccccccHHHHHHC--------CCccc
Confidence 445566678999999999999999999986 332 23333333333577777754 4555555 88999
Q ss_pred CcEEEECCCCceeccc-cccC
Q 003187 205 PLSVFLSPDLKPLMGG-TYFP 224 (840)
Q Consensus 205 P~~vfl~p~g~~~~~~-tY~p 224 (840)
||++|+. +|+.+... +..+
T Consensus 74 PT~i~fk-~G~~v~~~~G~~~ 93 (103)
T PHA02278 74 PVLIGYK-DGQLVKKYEDQVT 93 (103)
T ss_pred cEEEEEE-CCEEEEEEeCCCC
Confidence 9999887 47777543 3344
No 44
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.65 E-value=8.2e-08 Score=87.36 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCC--CccHHHHHHHHHHHhcCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE--RPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee--~pd~~~~y~~~~~~~~g~~G 203 (840)
+..++.+.+++++++|.|+++||++|+.|.... .++++.+. ..++.+++|.++ .+++.+.| |+.+
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~--------~i~~ 75 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEY--------NVKG 75 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhC--------CCcc
Confidence 446777778899999999999999999998743 35566665 468888999986 55544443 8889
Q ss_pred CCcEEEECCCCceec
Q 003187 204 WPLSVFLSPDLKPLM 218 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~ 218 (840)
+|+++++. +|+++.
T Consensus 76 ~Pt~~~~~-~g~~~~ 89 (104)
T cd02997 76 FPTFKYFE-NGKFVE 89 (104)
T ss_pred ccEEEEEe-CCCeeE
Confidence 99987765 677654
No 45
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7e-08 Score=94.18 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=74.1
Q ss_pred CCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCccHHHHHHHH
Q 003187 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTY 194 (840)
Q Consensus 118 ~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~pd~~~~y~~~ 194 (840)
+.-++|++. .+=-++=.+.++||+|+|+|.||..|+.|.. .+.++.. ..|...|||.++.+++...|
T Consensus 42 ~~~~~~~s~-~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P------~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y--- 111 (150)
T KOG0910|consen 42 ATLFNVQSD-SEFDDKVINSDVPVLVDFHAEWCGPCKMLGP------ILEELVSEYAGKFKLYKVDTDEHPELAEDY--- 111 (150)
T ss_pred cccccccCH-HHHHHHHHccCCCEEEEEecCcCccHhHhhH------HHHHHHHhhcCeEEEEEEccccccchHhhc---
Confidence 456888887 6777788899999999999999999999964 4444443 36999999999999999988
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc-ccccCCC
Q 003187 195 VQALYGGGGWPLSVFLSPDLKPLMG-GTYFPPE 226 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~~~~~-~tY~p~~ 226 (840)
++...|+++++.. |++.-. .|+.|++
T Consensus 112 -----~I~avPtvlvfkn-Ge~~d~~vG~~~~~ 138 (150)
T KOG0910|consen 112 -----EISAVPTVLVFKN-GEKVDRFVGAVPKE 138 (150)
T ss_pred -----ceeeeeEEEEEEC-CEEeeeecccCCHH
Confidence 8899999988764 555533 4566754
No 46
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.61 E-value=5.5e-08 Score=91.05 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=59.1
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
+..+||++|.|+++||+.|+.|.. +|. ++++.+.. ++..++||.++.+++.+.| |+.++|+++|+. +
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p-~~~--~l~~~~~~~~v~~~~vd~d~~~~l~~~~--------~V~~~Pt~~i~~-~ 88 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEP-VWK--EVIQELEPLGVGIATVNAGHERRLARKL--------GAHSVPAIVGII-N 88 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhH-HHH--HHHHHHHhcCceEEEEeccccHHHHHHc--------CCccCCEEEEEE-C
Confidence 347899999999999999999986 454 67777754 5888899999877776555 899999999995 8
Q ss_pred Cceecc
Q 003187 214 LKPLMG 219 (840)
Q Consensus 214 g~~~~~ 219 (840)
|+.+..
T Consensus 89 g~~~~~ 94 (111)
T cd02963 89 GQVTFY 94 (111)
T ss_pred CEEEEE
Confidence 887654
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.60 E-value=1.6e-07 Score=83.82 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH--hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l--n~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
++.+..+.+++++++|.|+++||++|+.+.. .| .++++.+ +.++..++||.++.+.+.+.| ++.++|
T Consensus 5 ~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~P 73 (101)
T cd02961 5 DDNFDELVKDSKDVLVEFYAPWCGHCKALAP-EY--EKLAKELKGDGKVVVAKVDCTANNDLCSEY--------GVRGYP 73 (101)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhhhH-HH--HHHHHHhccCCceEEEEeeccchHHHHHhC--------CCCCCC
Confidence 5678888888999999999999999999976 44 4567777 578999999999877776655 889999
Q ss_pred cEEEECCCCcee
Q 003187 206 LSVFLSPDLKPL 217 (840)
Q Consensus 206 ~~vfl~p~g~~~ 217 (840)
+++++.++|+..
T Consensus 74 t~~~~~~~~~~~ 85 (101)
T cd02961 74 TIKLFPNGSKEP 85 (101)
T ss_pred EEEEEcCCCccc
Confidence 999999987444
No 48
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.59 E-value=2.3e-07 Score=83.46 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=61.8
Q ss_pred HHHHH-HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 130 AFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 130 Al~~A-k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
.+... ++++|+|+|.|+++||+.|+.|.. .| .++++.++.+...++||.++.+.+.+.| ++.++|+++
T Consensus 5 ~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~-~l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~P~~~ 73 (101)
T TIGR01068 5 NFDETIASSDKPVLVDFWAPWCGPCKMIAP-IL--EELAKEYEGKVKFVKLNVDENPDIAAKY--------GIRSIPTLL 73 (101)
T ss_pred HHHHHHhhcCCcEEEEEECCCCHHHHHhCH-HH--HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCcCCEEE
Confidence 44443 344779999999999999999986 44 4677777778999999999887765554 889999999
Q ss_pred EECCCCceecc
Q 003187 209 FLSPDLKPLMG 219 (840)
Q Consensus 209 fl~p~g~~~~~ 219 (840)
|+ ++|+++..
T Consensus 74 ~~-~~g~~~~~ 83 (101)
T TIGR01068 74 LF-KNGKEVDR 83 (101)
T ss_pred EE-eCCcEeee
Confidence 99 68887644
No 49
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.59 E-value=1.5e-07 Score=86.35 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=61.4
Q ss_pred HHHHHH-HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
+.++.. +..++|++|.|+++||+.|+.|.. .| .++++.+...+..++||.++.+++.+.| ++.++|++
T Consensus 9 ~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~i~~~Pt~ 77 (104)
T cd03004 9 EDFPELVLNRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQKYESLCQQA--------NIRAYPTI 77 (104)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCchHHHHHHc--------CCCcccEE
Confidence 344444 466889999999999999999975 33 3456666556778899999888776655 89999999
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+|+..+|++...
T Consensus 78 ~~~~~g~~~~~~ 89 (104)
T cd03004 78 RLYPGNASKYHS 89 (104)
T ss_pred EEEcCCCCCceE
Confidence 999887565543
No 50
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.58 E-value=1.3e-07 Score=87.68 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc------CeEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGG 201 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~------~FV~vkvD~ee~pd~~~~y~~~~~~~~g~ 201 (840)
.+.++++.+++++++|.|+++||..|+.|.. +|+ ++++.+++ .+..++||.++.+++.+.| |+
T Consensus 8 ~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~--------~v 76 (108)
T cd02996 8 SGNIDDILQSAELVLVNFYADWCRFSQMLHP-IFE--EAAAKIKEEFPDAGKVVWGKVDCDKESDIADRY--------RI 76 (108)
T ss_pred HhhHHHHHhcCCEEEEEEECCCCHHHHhhHH-HHH--HHHHHHhhccCCCCcEEEEEEECCCCHHHHHhC--------CC
Confidence 5677778888999999999999999999986 354 45555532 3778899999888776665 89
Q ss_pred CCCCcEEEECCCCce
Q 003187 202 GGWPLSVFLSPDLKP 216 (840)
Q Consensus 202 ~G~P~~vfl~p~g~~ 216 (840)
.++|+++|+ ++|+.
T Consensus 77 ~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 77 NKYPTLKLF-RNGMM 90 (108)
T ss_pred CcCCEEEEE-eCCcC
Confidence 999999988 57774
No 51
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.58 E-value=1.2e-07 Score=94.05 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=71.4
Q ss_pred HHHHHHHH--hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003187 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 128 ~eAl~~Ak--~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~ 204 (840)
++.+++.. ..+++++|.|+++||+.|+.|.. +|+ ++++.++. ++..++||.++.|++.+.|. .+.-.++.++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p-~l~--~la~~~~~~~v~f~~VDvd~~~~la~~~~--V~~~~~v~~~ 109 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAP-VFA--ELSLKYNNNNLKFGKIDIGRFPNVAEKFR--VSTSPLSKQL 109 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHcccCCeEEEEEECCCCHHHHHHcC--ceecCCcCCC
Confidence 34455543 34689999999999999999976 443 45666653 58999999999998887661 0000123459
Q ss_pred CcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHH
Q 003187 205 PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD 246 (840)
Q Consensus 205 P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~ 246 (840)
||++++. +|+++....+ +..++.+..++---++.|.+.++
T Consensus 110 PT~ilf~-~Gk~v~r~~G-~~~~~~~~~~~~~~~~~~~~~~~ 149 (152)
T cd02962 110 PTIILFQ-GGKEVARRPY-YNDSKGRAVPFTFSKENVIRHFD 149 (152)
T ss_pred CEEEEEE-CCEEEEEEec-cccCccccccccccHHHHHHhcc
Confidence 9998886 8999876433 22222233222222455555544
No 52
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.53 E-value=1.7e-07 Score=88.53 Aligned_cols=77 Identities=13% Similarity=-0.047 Sum_probs=61.7
Q ss_pred HHHHHHH---HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHH-HHHHHHHHHhcCCCC
Q 003187 128 EEAFAEA---RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD-KVYMTYVQALYGGGG 203 (840)
Q Consensus 128 ~eAl~~A---k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~-~~y~~~~~~~~g~~G 203 (840)
++-|.++ .+++++++|.|+++||+.|+.|.. .| +++++.+......++||.++.+++. +.| ++.|
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p-~~--~~la~~~~~~v~~~~Vd~d~~~~l~~~~~--------~I~~ 84 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQ-EF--EQVAQKLSDQVLFVAINCWWPQGKCRKQK--------HFFY 84 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCeEEEEEECCCChHHHHHhc--------CCcc
Confidence 4455655 689999999999999999999976 44 4677778777788999999888775 355 7889
Q ss_pred CCcEEEECCCCce
Q 003187 204 WPLSVFLSPDLKP 216 (840)
Q Consensus 204 ~P~~vfl~p~g~~ 216 (840)
+||++++ .+|+.
T Consensus 85 ~PTl~lf-~~g~~ 96 (113)
T cd03006 85 FPVIHLY-YRSRG 96 (113)
T ss_pred cCEEEEE-ECCcc
Confidence 9999998 46653
No 53
>PTZ00051 thioredoxin; Provisional
Probab=98.51 E-value=2.7e-07 Score=83.46 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+.+.++.+++++++|.|+++||..|+.|.. .|+ ++++... ++..++||.++.+++.+.| ++.++|++
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~-~l~--~l~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~ 75 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAP-FYE--ECSKEYT-KMVFVKVDVDELSEVAEKE--------NITSMPTF 75 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHcC-CcEEEEEECcchHHHHHHC--------CCceeeEE
Confidence 5677888889999999999999999999975 332 3444332 5778889998776665554 88999998
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+++ .+|+++..
T Consensus 76 ~~~-~~g~~~~~ 86 (98)
T PTZ00051 76 KVF-KNGSVVDT 86 (98)
T ss_pred EEE-eCCeEEEE
Confidence 777 78988754
No 54
>PRK09381 trxA thioredoxin; Provisional
Probab=98.50 E-value=3.4e-07 Score=84.77 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=59.6
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
.+.++|++|.|+++||+.|+.|.. .|+ ++++.++.++..++||.+..+.+.+.| ++.++|+++|+ ++|
T Consensus 18 ~~~~~~vvv~f~~~~C~~C~~~~p-~~~--~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 85 (109)
T PRK09381 18 LKADGAILVDFWAEWCGPCKMIAP-ILD--EIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNG 85 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHhCCCcEEEEEECCCChhHHHhC--------CCCcCCEEEEE-eCC
Confidence 456999999999999999999975 443 566677667888999999888776555 88999999999 689
Q ss_pred ceecc
Q 003187 215 KPLMG 219 (840)
Q Consensus 215 ~~~~~ 219 (840)
+++..
T Consensus 86 ~~~~~ 90 (109)
T PRK09381 86 EVAAT 90 (109)
T ss_pred eEEEE
Confidence 88754
No 55
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.49 E-value=2.2e-07 Score=81.12 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=57.8
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003187 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (840)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl 210 (840)
++.+.++++|++|.|+++||++|+.+.. .+ .++++. +.++..+++|.++.+++.+.| ++.++|+++++
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~-~~--~~~~~~-~~~~~~~~i~~~~~~~~~~~~--------~v~~~P~~~~~ 70 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAP-VL--EELAEE-YPKVKFVKVDVDENPELAEEY--------GVRSIPTFLFF 70 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhH-HH--HHHHHH-CCCceEEEEECCCChhHHHhc--------CcccccEEEEE
Confidence 5566667799999999999999999976 33 333333 568889999999877766555 88899999988
Q ss_pred CCCCceecc
Q 003187 211 SPDLKPLMG 219 (840)
Q Consensus 211 ~p~g~~~~~ 219 (840)
. +|+++..
T Consensus 71 ~-~g~~~~~ 78 (93)
T cd02947 71 K-NGKEVDR 78 (93)
T ss_pred E-CCEEEEE
Confidence 5 5665543
No 56
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.48 E-value=3.9e-07 Score=83.96 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=55.2
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC--CccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee--~pd~~~~y~~~~~~~~g~~G~P~~vfl~p 212 (840)
++.+||++|.|+++||..|+.|.. .|+ ++++.++..+..++||.++ .+++.+.| ++.++|+++|+.+
T Consensus 15 ~~~~~~~lv~f~a~wC~~C~~~~~-~~~--~~a~~~~~~~~~~~v~~~~~~~~~~~~~~--------~i~~~Pt~~~~~~ 83 (109)
T cd03002 15 HNTNYTTLVEFYAPWCGHCKNLKP-EYA--KAAKELDGLVQVAAVDCDEDKNKPLCGKY--------GVQGFPTLKVFRP 83 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHhhCh-HHH--HHHHHhcCCceEEEEecCccccHHHHHHc--------CCCcCCEEEEEeC
Confidence 567999999999999999999986 343 5777777667777788876 55555444 8899999999998
Q ss_pred CC
Q 003187 213 DL 214 (840)
Q Consensus 213 ~g 214 (840)
++
T Consensus 84 ~~ 85 (109)
T cd03002 84 PK 85 (109)
T ss_pred CC
Confidence 87
No 57
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.3e-07 Score=86.52 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
+.....+.+.+|+|.|+|+++||+.|+.|+. .=.+++...+ +-+.+|||.++.+++.+.| ++.+.||+
T Consensus 11 ~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P---~~~~La~~y~-~v~Flkvdvde~~~~~~~~--------~V~~~PTf 78 (106)
T KOG0907|consen 11 DLVLSAAEAGDKLVVVDFYATWCGPCKAIAP---KFEKLAEKYP-DVVFLKVDVDELEEVAKEF--------NVKAMPTF 78 (106)
T ss_pred HHHHHHhhCCCCeEEEEEECCCCcchhhhhh---HHHHHHHHCC-CCEEEEEecccCHhHHHhc--------CceEeeEE
Confidence 5566667777899999999999999999985 1123333343 4889999999865655554 88999999
Q ss_pred EEECCCCcee
Q 003187 208 VFLSPDLKPL 217 (840)
Q Consensus 208 vfl~p~g~~~ 217 (840)
+|+ -+|+.+
T Consensus 79 ~f~-k~g~~~ 87 (106)
T KOG0907|consen 79 VFY-KGGEEV 87 (106)
T ss_pred EEE-ECCEEE
Confidence 999 445543
No 58
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.46 E-value=2.5e-07 Score=83.68 Aligned_cols=75 Identities=24% Similarity=0.324 Sum_probs=59.7
Q ss_pred HHHHHHh-cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 130 AFAEARK-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 130 Al~~Ak~-e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
.+++.-. ++++++|.|+++||+.|+.|.. .| .++++.+...+..++||.++.+++.+.| ++.++|+.+
T Consensus 8 ~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~-~~--~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~ 76 (103)
T PF00085_consen 8 NFEKFINESDKPVVVYFYAPWCPPCKAFKP-IL--EKLAKEYKDNVKFAKVDCDENKELCKKY--------GVKSVPTII 76 (103)
T ss_dssp THHHHHTTTSSEEEEEEESTTSHHHHHHHH-HH--HHHHHHTTTTSEEEEEETTTSHHHHHHT--------TCSSSSEEE
T ss_pred HHHHHHHccCCCEEEEEeCCCCCccccccc-ee--cccccccccccccchhhhhccchhhhcc--------CCCCCCEEE
Confidence 3444444 4999999999999999999975 33 4566777668999999999888877766 899999999
Q ss_pred EECCCCc
Q 003187 209 FLSPDLK 215 (840)
Q Consensus 209 fl~p~g~ 215 (840)
|+.....
T Consensus 77 ~~~~g~~ 83 (103)
T PF00085_consen 77 FFKNGKE 83 (103)
T ss_dssp EEETTEE
T ss_pred EEECCcE
Confidence 8866443
No 59
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.46 E-value=3.1e-07 Score=84.57 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=54.8
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e-e~pd~~~~y~~~~~~~~g~~G~P~~vfl~p 212 (840)
+...||+|+|.|+++||+.|+.|.. .|+ ++++.+. .+..++||.+ +.+++.+.| ++.++||++|++.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p-~l~--~la~~~~-~~~~~~vd~~~~~~~l~~~~--------~V~~~PT~~lf~~ 81 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRP-HFN--ALSSMFP-QIRHLAIEESSIKPSLLSRY--------GVVGFPTILLFNS 81 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhH-HHH--HHHHHhc-cCceEEEECCCCCHHHHHhc--------CCeecCEEEEEcC
Confidence 3467999999999999999999976 443 4566664 5778889988 678777665 8899999999986
Q ss_pred C
Q 003187 213 D 213 (840)
Q Consensus 213 ~ 213 (840)
.
T Consensus 82 g 82 (100)
T cd02999 82 T 82 (100)
T ss_pred C
Confidence 5
No 60
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.41 E-value=7.5e-07 Score=80.86 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~ 204 (840)
.+.++.+..++ +++|.|+++||+.|+.|.. .|+ ++++.+.. .+..++||.++.+++.+.| ++.++
T Consensus 7 ~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p-~~~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~ 74 (102)
T cd03005 7 EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAP-TWE--QLAKKFNNENPSVKIAKVDCTQHRELCSEF--------QVRGY 74 (102)
T ss_pred HHHHHHHhhcC-CEEEEEECCCCHHHHHhCH-HHH--HHHHHHhccCCcEEEEEEECCCChhhHhhc--------CCCcC
Confidence 45677776655 6999999999999999976 454 45555654 6899999999887766555 88999
Q ss_pred CcEEEECCCCcee
Q 003187 205 PLSVFLSPDLKPL 217 (840)
Q Consensus 205 P~~vfl~p~g~~~ 217 (840)
|+++|+ ++|+++
T Consensus 75 Pt~~~~-~~g~~~ 86 (102)
T cd03005 75 PTLLLF-KDGEKV 86 (102)
T ss_pred CEEEEE-eCCCee
Confidence 999999 677765
No 61
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.40 E-value=6.7e-07 Score=81.25 Aligned_cols=72 Identities=25% Similarity=0.383 Sum_probs=56.7
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCC-CccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFL 210 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee-~pd~~~~y~~~~~~~~g~~G~P~~vfl 210 (840)
.++.+|+++|.|+++||+.|+.|... =.++++.+. .+++.+++|.++ .+++.+.| ++.++|+++|+
T Consensus 14 ~~~~~~~~~v~f~a~~C~~C~~~~~~---~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~--------~i~~~P~~~~~ 82 (105)
T cd02998 14 VGDDKKDVLVEFYAPWCGHCKNLAPE---YEKLAAVFANEDDVVIAKVDADEANKDLAKKY--------GVSGFPTLKFF 82 (105)
T ss_pred hcCCCCcEEEEEECCCCHHHHhhChH---HHHHHHHhCCCCCEEEEEEECCCcchhhHHhC--------CCCCcCEEEEE
Confidence 34567899999999999999999652 234555554 469999999998 77776655 88999999999
Q ss_pred CCCCce
Q 003187 211 SPDLKP 216 (840)
Q Consensus 211 ~p~g~~ 216 (840)
.++|+.
T Consensus 83 ~~~~~~ 88 (105)
T cd02998 83 PKGSTE 88 (105)
T ss_pred eCCCCC
Confidence 988654
No 62
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.39 E-value=8.6e-07 Score=80.52 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=55.9
Q ss_pred HHHH-HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 130 AFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 130 Al~~-Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.++. .++++|+++|.|+++||.+|+.|.... .++++.++. ++..+++|.++. ++...+ ++.++|+
T Consensus 9 ~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~-~~~~~~--------~~~~~Pt 76 (104)
T cd02995 9 NFDEVVLDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN-DVPSEF--------VVDGFPT 76 (104)
T ss_pred hhHHHHhCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch-hhhhhc--------cCCCCCE
Confidence 3444 356679999999999999999998733 667777765 699999999865 343333 6689999
Q ss_pred EEEECCCC
Q 003187 207 SVFLSPDL 214 (840)
Q Consensus 207 ~vfl~p~g 214 (840)
++++.+++
T Consensus 77 ~~~~~~~~ 84 (104)
T cd02995 77 ILFFPAGD 84 (104)
T ss_pred EEEEcCCC
Confidence 99997765
No 63
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.38 E-value=1.4e-06 Score=88.05 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=58.1
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH---------------HHHHhc
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT---------------YVQALY 199 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~---------------~~~~~~ 199 (840)
...+|+|+|.|+++||+.|+.+. |.+.++.++++..|.|+.++.++-...|.+ ......
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~ 133 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDL 133 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhc
Confidence 34689999999999999999874 456666666788888887543321122211 111224
Q ss_pred CCCCCCcEEEECCCCceeccc-cccC
Q 003187 200 GGGGWPLSVFLSPDLKPLMGG-TYFP 224 (840)
Q Consensus 200 g~~G~P~~vfl~p~g~~~~~~-tY~p 224 (840)
++.|+|++++++++|+.++.. +.++
T Consensus 134 ~v~~~P~~~~id~~G~i~~~~~G~~~ 159 (173)
T TIGR00385 134 GVYGAPETFLVDGNGVILYRHAGPLN 159 (173)
T ss_pred CCeeCCeEEEEcCCceEEEEEeccCC
Confidence 778999999999999998763 3344
No 64
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.36 E-value=9.6e-07 Score=83.18 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+.+.++.+++++|+|.|+++||..|+.|.. ++ +++++-.. +...++||.++.+++.+.| ++.++|+.
T Consensus 12 ~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p-~l--~~la~~~~-~i~f~~Vd~~~~~~l~~~~--------~v~~vPt~ 79 (113)
T cd02989 12 EKEFFEIVKSSERVVCHFYHPEFFRCKIMDK-HL--EILAKKHL-ETKFIKVNAEKAPFLVEKL--------NIKVLPTV 79 (113)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCccHHHHHH-HH--HHHHHHcC-CCEEEEEEcccCHHHHHHC--------CCccCCEE
Confidence 3677777788999999999999999999975 22 23333332 4688999999999888776 88999999
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+|+. +|+.+..
T Consensus 80 l~fk-~G~~v~~ 90 (113)
T cd02989 80 ILFK-NGKTVDR 90 (113)
T ss_pred EEEE-CCEEEEE
Confidence 9887 6677644
No 65
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.35 E-value=1.1e-06 Score=80.00 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
+.+++.. +++ ++|.|+++||+.|+.|.. +|+ ++++.++. .+...+||.++.+++.+.| ++.++|++
T Consensus 9 ~~f~~~~-~~~-~lv~f~a~wC~~C~~~~p-~~~--~l~~~~~~~~v~~~~vd~~~~~~~~~~~--------~i~~~Pt~ 75 (101)
T cd02994 9 SNWTLVL-EGE-WMIEFYAPWCPACQQLQP-EWE--EFADWSDDLGINVAKVDVTQEPGLSGRF--------FVTALPTI 75 (101)
T ss_pred hhHHHHh-CCC-EEEEEECCCCHHHHHHhH-HHH--HHHHhhccCCeEEEEEEccCCHhHHHHc--------CCcccCEE
Confidence 3455444 344 789999999999999986 455 44554543 5888999999888876665 88999999
Q ss_pred EEECCCCce
Q 003187 208 VFLSPDLKP 216 (840)
Q Consensus 208 vfl~p~g~~ 216 (840)
+|+ ++|++
T Consensus 76 ~~~-~~g~~ 83 (101)
T cd02994 76 YHA-KDGVF 83 (101)
T ss_pred EEe-CCCCE
Confidence 987 77874
No 66
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.34 E-value=1.3e-06 Score=82.15 Aligned_cols=96 Identities=21% Similarity=0.335 Sum_probs=67.9
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
+.+.++.+.+++|+|.|+++||++|+.|.. .+++ +++.. +..-.++||.++.|++...| ++.+.|+++
T Consensus 13 ~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~-~l~~--la~~~-~~i~~~~vd~d~~~~l~~~~--------~v~~vPt~~ 80 (113)
T cd02975 13 EEFFKEMKNPVDLVVFSSKEGCQYCEVTKQ-LLEE--LSELS-DKLKLEIYDFDEDKEKAEKY--------GVERVPTTI 80 (113)
T ss_pred HHHHHHhCCCeEEEEEeCCCCCCChHHHHH-HHHH--HHHhc-CceEEEEEeCCcCHHHHHHc--------CCCcCCEEE
Confidence 445556677889999999999999999976 4432 34433 45667889999888877766 889999999
Q ss_pred EECCCC---ceeccccccCCCCCCCcccHHHHHHHHHH
Q 003187 209 FLSPDL---KPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 209 fl~p~g---~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
++..++ +..+.| .|+. ..|.++++.|..
T Consensus 81 i~~~g~~~~~~~~~G--~~~~-----~el~~~i~~i~~ 111 (113)
T cd02975 81 FLQDGGKDGGIRYYG--LPAG-----YEFASLIEDIVR 111 (113)
T ss_pred EEeCCeecceEEEEe--cCch-----HHHHHHHHHHHh
Confidence 997643 222222 3433 368888877754
No 67
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.32 E-value=1.1e-06 Score=83.91 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=66.7
Q ss_pred HHHHHH-HhcCCCEEEEEeccCChh--hh--hhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003187 129 EAFAEA-RKRDVPIFLSIGYSTCHW--CH--VMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (840)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~w--C~--~me~etf~d~eVa~~l-n~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~ 202 (840)
+-|++. ++.++||+++|++.||+. |+ .|+. ++. ...+++| ......+|||+++.+++.+.| |+.
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p-~~~-~~aa~~l~~~~v~~~kVD~d~~~~La~~~--------~I~ 86 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEE-LVL-ELAAQVLEDKGIGFGLVDSKKDAKVAKKL--------GLD 86 (120)
T ss_pred hhHHHHHHhCCceEEEEECCCcCChhhChhhcchh-hHH-HHHHHHhhcCCCEEEEEeCCCCHHHHHHc--------CCc
Confidence 344443 556679999999999987 99 6653 221 2223444 447999999999999999888 999
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHH
Q 003187 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 241 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i 241 (840)
|+||++++. +|+++.-.+..+++ .+.+.|+++
T Consensus 87 ~iPTl~lfk-~G~~v~~~G~~~~~------~l~~~l~~~ 118 (120)
T cd03065 87 EEDSIYVFK-DDEVIEYDGEFAAD------TLVEFLLDL 118 (120)
T ss_pred cccEEEEEE-CCEEEEeeCCCCHH------HHHHHHHHH
Confidence 999999886 88877533444533 455555543
No 68
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.29 E-value=6.7e-06 Score=86.64 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=58.9
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
.++|++|.|+++||+.|+.|... | .++++.+...+...+||.++.+++.+.| ++.|+|++++++ +|++
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~~~~~l~~~~--------~I~~~PTl~~f~-~G~~ 118 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDATRALNLAKRF--------AIKGYPTLLLFD-KGKM 118 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCcccHHHHHHc--------CCCcCCEEEEEE-CCEE
Confidence 47999999999999999999874 4 5677778767778899999888877666 899999999998 6776
Q ss_pred ec
Q 003187 217 LM 218 (840)
Q Consensus 217 ~~ 218 (840)
+.
T Consensus 119 v~ 120 (224)
T PTZ00443 119 YQ 120 (224)
T ss_pred EE
Confidence 53
No 69
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.28 E-value=2.1e-06 Score=81.71 Aligned_cols=72 Identities=22% Similarity=0.181 Sum_probs=49.6
Q ss_pred cCCCEEEEEec-------cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCc---cHHHHHHHHHHHhcCCC-CCC
Q 003187 137 RDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP---DVDKVYMTYVQALYGGG-GWP 205 (840)
Q Consensus 137 e~KpI~l~~g~-------~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p---d~~~~y~~~~~~~~g~~-G~P 205 (840)
++|||+|.|++ +||+.|+.|+. ++ .++++....+...++||+++.+ +....+. ...++. +.|
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P-~l--~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~----~~~~I~~~iP 92 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEP-VV--REALKAAPEDCVFIYCDVGDRPYWRDPNNPFR----TDPKLTTGVP 92 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhch-hH--HHHHHHCCCCCEEEEEEcCCcccccCcchhhH----hccCcccCCC
Confidence 48999999999 99999999985 33 2345555546788999998754 1111221 112677 999
Q ss_pred cEEEECCCCc
Q 003187 206 LSVFLSPDLK 215 (840)
Q Consensus 206 ~~vfl~p~g~ 215 (840)
|++++...++
T Consensus 93 T~~~~~~~~~ 102 (119)
T cd02952 93 TLLRWKTPQR 102 (119)
T ss_pred EEEEEcCCce
Confidence 9999965433
No 70
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.27 E-value=6.8e-05 Score=82.39 Aligned_cols=133 Identities=18% Similarity=0.070 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 620 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 620 (840)
+=++++|+++++++++ ++|++.|+++.+++.+++++.++ +++++ .++.....++....+=++
T Consensus 142 aGi~~~L~~l~~~t~d----------------~~~l~~A~~~~~~~~~~~~~~~~-g~~~~-~~~~~~~~~wchG~aGi~ 203 (321)
T cd04791 142 AGIALFLLRLYKATGD----------------SRYLELAEEALDKELARAVVDDG-GLLQV-DEGARLLPYLCSGSAGLG 203 (321)
T ss_pred HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHhhccCCC-CceEc-CCCCccCcccCCCcHHHH
Confidence 6678889999999998 89999999999999999876544 44442 333334557888889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003187 621 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 700 (840)
Q Consensus 621 ~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~ 700 (840)
.+++.++++|+|++|++.|+++.+.+...++.. - ..-.|.+=.+..|+.++..+++
T Consensus 204 ~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~~--~----------------------~lchG~~G~~~~l~~~~~~~~~ 259 (321)
T cd04791 204 LLMLRLEAITGDKRWRDEADGIAHAALSSCYAN--P----------------------GLFSGTAGLGAHLNDLAAEGDN 259 (321)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhhccC--c----------------------cccCCcHhHHHHHHhhcccccC
Confidence 999999999999999999999988887654210 0 1122334456667778888875
Q ss_pred CCchHHHHHHHHHHHHHH
Q 003187 701 SKSDYYRQNAEHSLAVFE 718 (840)
Q Consensus 701 ~~~~~y~~~A~~~l~~~~ 718 (840)
++|++.+.++...+.
T Consensus 260 ---~~~~~~~~~~~~~~~ 274 (321)
T cd04791 260 ---ALYKAAAERLALYLI 274 (321)
T ss_pred ---hHHHHHHHHHHHHhc
Confidence 788888887765554
No 71
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.26 E-value=3.4e-06 Score=76.62 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=59.5
Q ss_pred HHHHHHH-HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~A-k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.++.. .+.+++++|.|+++||+.|+.|... | .++++.+...+..+++|.++.+++.+.| ++.++|+
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~id~~~~~~~~~~~--------~i~~~P~ 75 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALKGIVKVGAVDADVHQSLAQQY--------GVRGFPT 75 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCceEEEEECcchHHHHHHC--------CCCccCE
Confidence 4556655 4557779999999999999999753 4 4566666667888899999888766554 8899999
Q ss_pred EEEECCCCc
Q 003187 207 SVFLSPDLK 215 (840)
Q Consensus 207 ~vfl~p~g~ 215 (840)
++++.++.+
T Consensus 76 ~~~~~~~~~ 84 (103)
T cd03001 76 IKVFGAGKN 84 (103)
T ss_pred EEEECCCCc
Confidence 999986633
No 72
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.26 E-value=3.3e-06 Score=86.25 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=55.1
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------HHHhcC
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALYG 200 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~---------------~~~~~g 200 (840)
..+|+|+|.|+++||+.|+.+.. .+.++-++++..|-|+.++.++-...|++. .....|
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p------~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQ------YLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 36999999999999999998754 344444456767777765544433333221 112347
Q ss_pred CCCCCcEEEECCCCceeccc
Q 003187 201 GGGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 201 ~~G~P~~vfl~p~g~~~~~~ 220 (840)
+.|+|+++|+|++|++.+..
T Consensus 140 v~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred CCcCCeEEEECCCceEEEEE
Confidence 88999999999999988763
No 73
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.24 E-value=4.9e-06 Score=79.61 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=50.6
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---C--eEEEEEcCCCCccHHHHH---------------HHH
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---W--FVSIKVDREERPDVDKVY---------------MTY 194 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~--FV~vkvD~ee~pd~~~~y---------------~~~ 194 (840)
.-.+|+|+|.|+++||+.|+.+... ++ ++.+.+.+ + +|.|.+|.++ .+..+.+ ...
T Consensus 15 ~~~gk~vll~Fwa~wC~~C~~~~p~-l~--~~~~~~~~~~~~~~vv~is~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd03009 15 SLEGKTVGLYFSASWCPPCRAFTPK-LV--EFYEKLKESGKNFEIVFISWDRDE-ESFNDYFSKMPWLAVPFSDRERRSR 90 (131)
T ss_pred HhCCcEEEEEEECCCChHHHHHhHH-HH--HHHHHHHhcCCCEEEEEEECCCCH-HHHHHHHHcCCeeEcccCCHHHHHH
Confidence 3468999999999999999997542 11 12223322 3 4555555442 2211110 011
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003187 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.....|+.++|++++++++|+++..
T Consensus 91 ~~~~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 91 LNRTFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred HHHHcCCCCCCEEEEECCCCCEEcc
Confidence 2223589999999999999998864
No 74
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.3e-06 Score=90.71 Aligned_cols=92 Identities=25% Similarity=0.302 Sum_probs=69.6
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
...+||+|+||++||+.|+.+.. .=..++.--+-.|+.+|||.++.|+|...| |+.+.|+.|. =.||+
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p---~Lekla~~~~G~f~LakvN~D~~p~vAaqf--------giqsIPtV~a-f~dGq 108 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTP---TLEKLAAEYKGKFKLAKVNCDAEPMVAAQF--------GVQSIPTVYA-FKDGQ 108 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHH---HHHHHHHHhCCceEEEEecCCcchhHHHHh--------CcCcCCeEEE-eeCCc
Confidence 33679999999999999999975 224555666668999999999999999877 9999999764 46899
Q ss_pred eeccccccCCCCCCCcccHHHHHHHHHHH
Q 003187 216 PLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (840)
Q Consensus 216 ~~~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (840)
|+-+....-|++ ...+.|+++...
T Consensus 109 pVdgF~G~qPes-----qlr~~ld~~~~~ 132 (304)
T COG3118 109 PVDGFQGAQPES-----QLRQFLDKVLPA 132 (304)
T ss_pred CccccCCCCcHH-----HHHHHHHHhcCh
Confidence 998753323332 456666666544
No 75
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.21 E-value=0.00019 Score=84.90 Aligned_cols=273 Identities=17% Similarity=0.197 Sum_probs=156.4
Q ss_pred hcccCCCCCCCCC-CCCC--C---hhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEE-Ee-
Q 003187 294 KSYDSRFGGFGSA-PKFP--R---PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YS- 365 (840)
Q Consensus 294 ~~~D~~~GGfg~a-PKFP--~---~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~R-Ys- 365 (840)
..+.+.+||+.+. |.++ - ...|.-+.+.+..+ ++++.++.+...++.+.. -.+ ..|+.- |.
T Consensus 39 ~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~-------~D~~l~~~~d~~V~~l~~--~Q~--~dGYl~~~~~ 107 (520)
T PF07944_consen 39 PNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYT-------GDPELKAKADEIVDELAA--AQQ--PDGYLGTYPE 107 (520)
T ss_pred CCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHH--hcc--CCceeccccc
Confidence 3445567887622 2222 1 23344433333333 256777777777777766 222 334332 21
Q ss_pred -----cCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccc
Q 003187 366 -----VDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRK 440 (840)
Q Consensus 366 -----vD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~ 440 (840)
.+..|.. ---.+|...-|+.+...+|+.||++..+++|.+.++|+.+.+..-+ .+.
T Consensus 108 ~~~~~~~~~w~~--~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~--------~~~--------- 168 (520)
T PF07944_consen 108 ERNFNPDDRWAP--DMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLG--------PEP--------- 168 (520)
T ss_pred ccccccccCCCC--CccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCC--------HHH---------
Confidence 2345655 2334999999999999999999999999999999999954331100 000
Q ss_pred cccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 003187 441 KEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 520 (840)
Q Consensus 441 ~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~ 520 (840)
++...
T Consensus 169 -------------------------------------------~~~~~-------------------------------- 173 (520)
T PF07944_consen 169 -------------------------------------------GQKMG-------------------------------- 173 (520)
T ss_pred -------------------------------------------hhccc--------------------------------
Confidence 00000
Q ss_pred hhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE
Q 003187 521 DVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH 600 (840)
Q Consensus 521 ~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~ 600 (840)
.+. .+-|..+|+++|+++|+ ++||+.|+...+ ...+++. +..+.
T Consensus 174 ---------------~~~-~~~i~~~l~~LY~~Tgd----------------~~yL~lA~~f~~---~~~~~~~-~~~~~ 217 (520)
T PF07944_consen 174 ---------------YPE-HGGINEALVRLYEITGD----------------ERYLDLAEYFVD---QRGFDPY-DLAYG 217 (520)
T ss_pred ---------------ccc-cchHHHHHHHHHHHhCC----------------HHHHHHHHHHHH---HhCCCCC-chhhc
Confidence 001 13445789999999998 899999977663 3344430 00000
Q ss_pred eecCCCC-----CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCcccccc--c
Q 003187 601 SFRNGPS-----KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRV--K 673 (840)
Q Consensus 601 ~~~~g~~-----~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~--k 673 (840)
.+..+ ...+..--.+++..|..++|++|||++|++.++.+++.+.++-.= -+||.-.... .|.....- .
T Consensus 218 --~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y-~tGg~g~~~~-~E~f~~~~~lp 293 (520)
T PF07944_consen 218 --QDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMY-ATGGIGSDHE-GEHFGPPYDLP 293 (520)
T ss_pred --CccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCee-ccCCCcCCCC-CccCCCCCCCC
Confidence 01111 111223334678899999999999999999999999988764221 2344433210 01110000 0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003187 674 EDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSL 714 (840)
Q Consensus 674 ~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l 714 (840)
......+-....-+.....+|..+||+ ..|.+..|+++
T Consensus 294 ~~~~~~EtCas~~~~~~~~~L~~~tgd---~~yaD~~Er~l 331 (520)
T PF07944_consen 294 NRLAYAETCASVNMMKLARRLFRLTGD---ARYADYYERAL 331 (520)
T ss_pred cCCCCccccHHHHHHHHHHHHHhcCCC---chHHHHHHHHH
Confidence 000112222223355556688899986 78999888664
No 76
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.19 E-value=6.1e-06 Score=81.37 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=54.6
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--------CeEEEEEcCCCCccHHHHHH-------------
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--------WFVSIKVDREERPDVDKVYM------------- 192 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--------~FV~vkvD~ee~pd~~~~y~------------- 192 (840)
+.=.||+|+|.|+|+||+.|+..-. .+. ++.+.+++ .|..|-|+.++.++..+.|.
T Consensus 21 s~~kgk~vlL~FwAsWCppCr~e~P-~L~--~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~ 97 (146)
T cd03008 21 ARLENRVLLLFFGAVVSPQCQLFAP-KLK--DFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFE 97 (146)
T ss_pred HHhCCCEEEEEEECCCChhHHHHHH-HHH--HHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeeccc
Confidence 3446899999999999999998643 111 22222322 47777777765433212221
Q ss_pred ----HHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 193 ----TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 193 ----~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
..+...+++.|.|+++++|++|+++..
T Consensus 98 ~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 98 DEFRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred chHHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 123334588999999999999999865
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.17 E-value=4.1e-06 Score=79.56 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=55.8
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHH---------------H
Q 003187 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMT---------------Y 194 (840)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~---------------~ 194 (840)
+..+.-.+||++|.|+++||+.|+.+.. .+.++-++. +..|-|+.+..++-.+.|++ .
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 91 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR 91 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch
Confidence 4444445999999999999999999763 344433332 55555554332222122211 0
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccc-cccCC
Q 003187 195 VQALYGGGGWPLSVFLSPDLKPLMGG-TYFPP 225 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~~~~~~-tY~p~ 225 (840)
+....++.++|+++|++++|+++... ++++.
T Consensus 92 ~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 92 VGIDLGVYGVPETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred HHHhcCCCCCCeEEEECCCceEEEEEeccCCh
Confidence 11124888999999999999988663 45553
No 78
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.13 E-value=6.7e-06 Score=78.63 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHH--HHHHHHHHHh---cCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD--KVYMTYVQAL---YGGG 202 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~--~~y~~~~~~~---~g~~ 202 (840)
.+.+.+.-++++.++|.||++||+||+.|.. .+ .++++-.+..|+.|.+|.+..+++. ..+..+.+.. .++.
T Consensus 13 ~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P-~l--~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~ 89 (122)
T TIGR01295 13 VVRALEALDKKETATFFIGRKTCPYCRKFSG-TL--SGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM 89 (122)
T ss_pred HHHHHHHHHcCCcEEEEEECCCChhHHHHhH-HH--HHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence 4556777788999999999999999999975 22 2444432234666555554322322 1233333322 3677
Q ss_pred CCCcEEEECCCCceecc
Q 003187 203 GWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~ 219 (840)
|+|+++++. +|+.+..
T Consensus 90 ~~PT~v~~k-~Gk~v~~ 105 (122)
T TIGR01295 90 GTPTFVHIT-DGKQVSV 105 (122)
T ss_pred CCCEEEEEe-CCeEEEE
Confidence 899999664 5676654
No 79
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.11 E-value=7.5e-06 Score=77.16 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=55.2
Q ss_pred HHHHHH-HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCC--CccHHHHHHHHHHHhcCCC
Q 003187 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREE--RPDVDKVYMTYVQALYGGG 202 (840)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee--~pd~~~~y~~~~~~~~g~~ 202 (840)
+.+++. +..+|||+|.|+++||+.|+.|.. +|+ ++++.+.+ .+...+||.+. .+++.+.| ++.
T Consensus 9 ~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~--------~i~ 77 (114)
T cd02992 9 ASFNSALLGSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDF--------GVT 77 (114)
T ss_pred HhHHHHHhcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhC--------CCC
Confidence 344544 455689999999999999999976 565 46776653 26667888643 34444433 889
Q ss_pred CCCcEEEECCCCcee
Q 003187 203 GWPLSVFLSPDLKPL 217 (840)
Q Consensus 203 G~P~~vfl~p~g~~~ 217 (840)
++|+++|+.++.+..
T Consensus 78 ~~Pt~~lf~~~~~~~ 92 (114)
T cd02992 78 GYPTLRYFPPFSKEA 92 (114)
T ss_pred CCCEEEEECCCCccC
Confidence 999999997776433
No 80
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.10 E-value=8.5e-06 Score=76.41 Aligned_cols=68 Identities=9% Similarity=0.057 Sum_probs=52.1
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
++||+|.|+++||+.|+.|.. ++ .++++.+. +...++||.++. ++.+.| ++.++|+.+++. +|+++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~-~l--~~la~~~~-~v~f~~vd~~~~-~l~~~~--------~i~~~Pt~~~f~-~G~~v 89 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDS-HL--EELAAKYP-ETKFVKINAEKA-FLVNYL--------DIKVLPTLLVYK-NGELI 89 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHH-HH--HHHHHHCC-CcEEEEEEchhh-HHHHhc--------CCCcCCEEEEEE-CCEEE
Confidence 499999999999999999976 44 34555543 456689999876 666555 889999988775 57877
Q ss_pred cc
Q 003187 218 MG 219 (840)
Q Consensus 218 ~~ 219 (840)
..
T Consensus 90 ~~ 91 (113)
T cd02957 90 DN 91 (113)
T ss_pred EE
Confidence 54
No 81
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.09 E-value=4.9e-06 Score=97.17 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=51.1
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cC--eEEEEEcC---CCCc-cHHHHH---------------HHH
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DW--FVSIKVDR---EERP-DVDKVY---------------MTY 194 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~--FV~vkvD~---ee~p-d~~~~y---------------~~~ 194 (840)
++|||+|+|+++||++|+.+..+. .++.+..+ +. ||.|.+|. ++.+ ++.+.+ ...
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L---~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGET---EKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 699999999999999999976422 12333332 22 34443321 1111 111100 111
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc-ccccCC
Q 003187 195 VQALYGGGGWPLSVFLSPDLKPLMG-GTYFPP 225 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~~~~~-~tY~p~ 225 (840)
. ...++.++|+++|++++|+++.. .++++.
T Consensus 132 a-k~fgV~giPTt~IIDkdGkIV~~~~G~~~~ 162 (521)
T PRK14018 132 A-QSLNISVYPSWAIIGKDGDVQRIVKGSISE 162 (521)
T ss_pred H-HHcCCCCcCeEEEEcCCCeEEEEEeCCCCH
Confidence 2 23488999999999999999876 355653
No 82
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.09 E-value=5.9e-06 Score=77.64 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=66.6
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccC--ChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHh
Q 003187 121 VDWFAWGEEAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQAL 198 (840)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~w--C~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~ 198 (840)
.+|-.-.+.-|++--+.+.+++|+|+++| |+.|+.|+. .| +++++.+......++||.++.|++...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P-~l--eela~e~~~~v~f~kVdid~~~~la~~f------- 79 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAV-VL--PELLKAFPGRFRAAVVGRADEQALAARF------- 79 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHh-HH--HHHHHHCCCcEEEEEEECCCCHHHHHHc-------
Confidence 34444444445544478899999999997 999999986 22 4566666656778899999999988877
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003187 199 YGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~ 219 (840)
++.|+||++|+. +|+++..
T Consensus 80 -~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 80 -GVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred -CCCcCCEEEEEE-CCEEEEE
Confidence 899999998887 6787765
No 83
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.07 E-value=4.6e-06 Score=78.54 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=52.1
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHH--------------HHH
Q 003187 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVY--------------MTY 194 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y--------------~~~ 194 (840)
.+..+...+|+++|.|+++||+.|+.+.. .+.++.++ .++.|.+|.+..+.+.... .+.
T Consensus 12 ~~~~~~~~~k~~vl~F~~~~C~~C~~~~~------~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (123)
T cd03011 12 QFDLESLSGKPVLVYFWATWCPVCRFTSP------TVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVI 85 (123)
T ss_pred EeeHHHhCCCEEEEEEECCcChhhhhhCh------HHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHH
Confidence 34445556799999999999999999843 23322222 3444544433111111100 011
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccc-cccCC
Q 003187 195 VQALYGGGGWPLSVFLSPDLKPLMGG-TYFPP 225 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~~~~~~-tY~p~ 225 (840)
.+ ..++.++|+++|++++| +.+.. ++.++
T Consensus 86 ~~-~~~i~~~P~~~vid~~g-i~~~~~g~~~~ 115 (123)
T cd03011 86 SA-RWGVSVTPAIVIVDPGG-IVFVTTGVTSE 115 (123)
T ss_pred HH-hCCCCcccEEEEEcCCC-eEEEEeccCCH
Confidence 12 23889999999999999 65543 45554
No 84
>PTZ00102 disulphide isomerase; Provisional
Probab=98.07 E-value=5e-06 Score=96.43 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=59.2
Q ss_pred HHHHHH-HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
+.+++. .+++|+|||.|+++||++|+.|+. +|+ ++++.+. .+++.+++|.+.++...+.| ++.|+|
T Consensus 365 ~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~~~~~~~--------~v~~~P 433 (477)
T PTZ00102 365 NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANETPLEEF--------SWSAFP 433 (477)
T ss_pred cchHHHHhcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCccchhcC--------CCcccC
Confidence 445544 788999999999999999999976 555 3444443 36889999998776654444 788999
Q ss_pred cEEEECCCCce
Q 003187 206 LSVFLSPDLKP 216 (840)
Q Consensus 206 ~~vfl~p~g~~ 216 (840)
+++|+.++++.
T Consensus 434 t~~~~~~~~~~ 444 (477)
T PTZ00102 434 TILFVKAGERT 444 (477)
T ss_pred eEEEEECCCcc
Confidence 99999988764
No 85
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.06 E-value=1.3e-05 Score=72.09 Aligned_cols=76 Identities=25% Similarity=0.242 Sum_probs=46.7
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCC-ccHHHHH----------------HHHHHHh
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREER-PDVDKVY----------------MTYVQAL 198 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~-pd~~~~y----------------~~~~~~~ 198 (840)
||+++|.|+++||..|+..-... .++.+.++ +.+..|-|..++. .+..+.+ ...+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l---~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKL---KELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 79999999999999999865422 23555565 4544444444332 1111111 1223344
Q ss_pred cCCCCCCcEEEECCCCce
Q 003187 199 YGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~ 216 (840)
.++.++|++++++++|++
T Consensus 78 ~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 78 YGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp TT-TSSSEEEEEETTSBE
T ss_pred CCCCcCCEEEEECCCCCC
Confidence 589999999999999974
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.06 E-value=1.2e-05 Score=77.32 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=53.2
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHH----------------
Q 003187 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYM---------------- 192 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~pd~~~~y~---------------- 192 (840)
..+.-.||+|+|.|+++||+.|+.+..+ ++ ++.+.+.+ .+..|-|+.++.++--+.|+
T Consensus 11 ~l~~~~Gk~vll~F~atwC~~C~~~~p~-l~--~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 11 PVSALEGKTVGLYFSASWCPPCRAFTPK-LV--EFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred cHHHhCCCEEEEEEECCCCchHHHHHHH-HH--HHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 3444468999999999999999986531 11 23333333 34455555544332111111
Q ss_pred -HHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 193 -TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 193 -~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
..+....++.|.|+++|++++|+++..
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEch
Confidence 122233588999999999999998865
No 87
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.05 E-value=1.6e-05 Score=73.88 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=50.9
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHH-------------HHHHHhcCCCC
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM-------------TYVQALYGGGG 203 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~-------------~~~~~~~g~~G 203 (840)
++||++|.|+++||+.|+.+... ++ ++.+.....+..|.+- +..++-.+.+. .......++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~-l~--~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 95 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPV-IR--SIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSK 95 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHH-HH--HHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCC
Confidence 58999999999999999997643 32 3444444445444441 22222111111 11223357889
Q ss_pred CCcEEEECCCCceeccc
Q 003187 204 WPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~~~ 220 (840)
+|+++++|++|++++.+
T Consensus 96 ~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 96 LPYAVLLDEAGVIAAKG 112 (114)
T ss_pred cCeEEEECCCCeEEecc
Confidence 99999999999988754
No 88
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.03 E-value=7.4e-06 Score=74.25 Aligned_cols=87 Identities=17% Similarity=0.262 Sum_probs=54.9
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCC-ccHHHHHHH--------------
Q 003187 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVYMT-------------- 193 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~-pd~~~~y~~-------------- 193 (840)
.+..+...+|+++|.|++.||..|+.+.. .+. ++.+.+. .++..+.|+.+.. ++..+.+.+
T Consensus 11 ~~~~~~~~~k~~ll~f~~~~C~~C~~~~~-~l~--~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (116)
T cd02966 11 PVSLSDLKGKVVLVNFWASWCPPCRAEMP-ELE--ALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG 87 (116)
T ss_pred EeehHHcCCCEEEEEeecccChhHHHHhH-HHH--HHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc
Confidence 44555556999999999999999997643 222 2333332 2456666666653 332222211
Q ss_pred HHHHhcCCCCCCcEEEECCCCceecc
Q 003187 194 YVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 194 ~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
......++.++|.++++||+|++++.
T Consensus 88 ~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 88 ELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred hHHHhcCcCccceEEEECCCCcEEEE
Confidence 11223377899999999999998764
No 89
>PHA02125 thioredoxin-like protein
Probab=98.02 E-value=1.3e-05 Score=69.74 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=46.9
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecccc
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGT 221 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~t 221 (840)
++.|+++||++|+.|... |+ + + .|..++||.++.+++.+.| ++.++||++ +|+.+....
T Consensus 2 iv~f~a~wC~~Ck~~~~~-l~--~----~--~~~~~~vd~~~~~~l~~~~--------~v~~~PT~~----~g~~~~~~~ 60 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPM-LA--N----V--EYTYVDVDTDEGVELTAKH--------HIRSLPTLV----NTSTLDRFT 60 (75)
T ss_pred EEEEECCCCHhHHHHHHH-HH--H----H--hheEEeeeCCCCHHHHHHc--------CCceeCeEE----CCEEEEEEe
Confidence 678999999999999763 32 1 1 3677899999888887766 889999987 577664432
Q ss_pred ccCCC
Q 003187 222 YFPPE 226 (840)
Q Consensus 222 Y~p~~ 226 (840)
.+|++
T Consensus 61 G~~~~ 65 (75)
T PHA02125 61 GVPRN 65 (75)
T ss_pred CCCCc
Confidence 34543
No 90
>PTZ00102 disulphide isomerase; Provisional
Probab=98.01 E-value=9.9e-06 Score=94.00 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~ 204 (840)
.+.+..+.++++++||.|+++||+.|+.|..+.. ++++.++ .+++..+||.++.+++.+.| ++.|+
T Consensus 39 ~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~--------~i~~~ 107 (477)
T PTZ00102 39 DSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDATEEMELAQEF--------GVRGY 107 (477)
T ss_pred hhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECCCCHHHHHhc--------CCCcc
Confidence 4566777788999999999999999999987532 3455554 35899999999888877666 88999
Q ss_pred CcEEEECCCCce
Q 003187 205 PLSVFLSPDLKP 216 (840)
Q Consensus 205 P~~vfl~p~g~~ 216 (840)
|+++++..++..
T Consensus 108 Pt~~~~~~g~~~ 119 (477)
T PTZ00102 108 PTIKFFNKGNPV 119 (477)
T ss_pred cEEEEEECCceE
Confidence 999999876543
No 91
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.00 E-value=1.2e-05 Score=92.46 Aligned_cols=76 Identities=22% Similarity=0.314 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~ 204 (840)
++.+..+.+++|++||.|+++||+.|+.|..+. .++++.++. ++..++||.++.+++.+.| ++.|+
T Consensus 8 ~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~ 76 (462)
T TIGR01130 8 KDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATEEKDLAQKY--------GVSGY 76 (462)
T ss_pred HHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCCcHHHHHhC--------CCccc
Confidence 456777778899999999999999999998743 446666653 3899999999888776655 89999
Q ss_pred CcEEEECCCC
Q 003187 205 PLSVFLSPDL 214 (840)
Q Consensus 205 P~~vfl~p~g 214 (840)
|+++++...+
T Consensus 77 Pt~~~~~~g~ 86 (462)
T TIGR01130 77 PTLKIFRNGE 86 (462)
T ss_pred cEEEEEeCCc
Confidence 9988886443
No 92
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.95 E-value=1.6e-05 Score=69.25 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=45.6
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
+.-|+++||++|+.|.. .+ .++++.++..+..++||.++.+++.+.| |+.+.|++++ +|+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l--~~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~vPt~~~---~g~~ 63 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKR-VV--EEVAKEMGDAVEVEYINVMENPQKAMEY--------GIMAVPAIVI---NGDV 63 (82)
T ss_pred EEEEECCCCcchHHHHH-HH--HHHHHHhcCceEEEEEeCccCHHHHHHc--------CCccCCEEEE---CCEE
Confidence 34588999999999986 22 3344445556778899999888876655 8889999987 6664
No 93
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.94 E-value=0.0015 Score=71.71 Aligned_cols=257 Identities=18% Similarity=0.166 Sum_probs=160.6
Q ss_pred CCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHH
Q 003187 307 PKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLA 386 (840)
Q Consensus 307 PKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll 386 (840)
=-+|....|.=+.+.+..++ +++.++.+....+--.. .|||-+|.+|. -..-
T Consensus 34 Wdwe~GV~lyGv~~~~eAT~-------d~~yl~~l~~~~d~~i~-------~~g~~~~~id~--------------i~~g 85 (357)
T COG4225 34 WDWEQGVFLYGVARAYEATG-------DAEYLDYLKTWFDEQID-------EGGLPPRNIDH--------------IAAG 85 (357)
T ss_pred ccccccchHHHHHHHHHHcC-------cHHHHHHHHHHHHhhhc-------cCCCCccchhh--------------hccC
Confidence 34566666665666665543 46777766555443221 24466666552 1122
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccC
Q 003187 387 NVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKP 466 (840)
Q Consensus 387 ~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~ 466 (840)
..+.--|+.|+||.|+..|.+..+|+..+++-.+|||..-.
T Consensus 86 ~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~--------------------------------------- 126 (357)
T COG4225 86 LTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKV--------------------------------------- 126 (357)
T ss_pred ceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCcccccc---------------------------------------
Confidence 23455688899999999999999999999987788886420
Q ss_pred CCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHH
Q 003187 467 TGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISS 546 (840)
Q Consensus 467 ~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~A 546 (840)
++ | +.+ -+|.- -|...-
T Consensus 127 -~~--------p---------------------------~Q~---------------------W~DtL------~Ma~~F 143 (357)
T COG4225 127 -KY--------P---------------------------HQM---------------------WLDTL------YMAGLF 143 (357)
T ss_pred -Cc--------h---------------------------hHh---------------------hhcch------hhhhHH
Confidence 00 0 000 12221 344567
Q ss_pred HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC-CC----CCC---CCCcc-hHH
Q 003187 547 FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GP----SKA---PGFLD-DYA 617 (840)
Q Consensus 547 La~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~-g~----~~~---~~~le-DyA 617 (840)
+++.++++++ ++|++.+..-..-..+++.||++|.+||-|.. |+ ... +.++- ..+
T Consensus 144 ~ak~g~~~~~----------------~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~g 207 (357)
T COG4225 144 LAKYGQVTGR----------------PEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNG 207 (357)
T ss_pred HHHHHHHhCC----------------HHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceeeecccc
Confidence 8889999987 89999999988888999999999999999843 31 111 22222 456
Q ss_pred HHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 003187 618 FLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 692 (840)
Q Consensus 618 ~~i~aLl~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~Ll 692 (840)
+++.++.++.+.-.+. .+.+.-..+.+.+.+ .-| ++|-|+..- +++ |+ ....+-|+.+..|-+|+
T Consensus 208 W~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r-~Qd-e~GlW~tiL-Dd~----~~---~sy~EsSaSa~faYall 277 (357)
T COG4225 208 WYAMALADLLELLPEDHPDRRELLNVLRDLVDALIR-YQD-ESGLWHTIL-DDG----RP---GSYLESSASAGFAYALL 277 (357)
T ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH-hhc-cccchhhhh-ccC----CC---CCchhhhHHHHHHHHHH
Confidence 7777777777764432 233444444444433 345 566565432 221 11 12345688888888888
Q ss_pred H---HHHHhCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003187 693 R---LASIVAGSKSDYYRQNAEHSLAVFETRLKDM 724 (840)
Q Consensus 693 r---L~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~ 724 (840)
+ ++-+. ++|...+++.++.+.+.+...
T Consensus 278 kgi~~G~l~-----~~~~~~~~kA~~aLl~~i~~~ 307 (357)
T COG4225 278 KGINLGILD-----PEYAPVAEKALDALLGHIDEE 307 (357)
T ss_pred HHHhcCCCC-----chhhHHHHHHHHHHHhhcccc
Confidence 7 66553 457788888888876666443
No 94
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.88 E-value=2.4e-05 Score=77.85 Aligned_cols=80 Identities=11% Similarity=0.173 Sum_probs=47.8
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHH---HHHHHHhc---CCCC
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVY---MTYVQALY---GGGG 203 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~pd~~~~y---~~~~~~~~---g~~G 203 (840)
+....+++.+|.|+++||++|+.+. |.+.++-++ .++.|.+|....+.....+ ........ ++.+
T Consensus 45 ~~~~l~~~~lvnFWAsWCppCr~e~------P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~ 118 (153)
T TIGR02738 45 RHANQDDYALVFFYQSTCPYCHQFA------PVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV 118 (153)
T ss_pred hhhhcCCCEEEEEECCCChhHHHHH------HHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC
Confidence 3345567789999999999999974 444443333 3555555533211111011 11112223 5679
Q ss_pred CCcEEEECCCCceec
Q 003187 204 WPLSVFLSPDLKPLM 218 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~ 218 (840)
.|+++++|++|+.+.
T Consensus 119 iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 119 TPATFLVNVNTRKAY 133 (153)
T ss_pred CCeEEEEeCCCCEEE
Confidence 999999999988654
No 95
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.85 E-value=4.7e-05 Score=77.40 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=51.1
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
+++|+|+|+++||+.|+.|.. ++ .++++... +...+|||+++. ++...| ++.++||++|+- +|+++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~-~l--~~LA~~~~-~vkF~kVd~d~~-~l~~~f--------~v~~vPTlllyk-~G~~v 148 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNS-SL--LCLAAEYP-AVKFCKIRASAT-GASDEF--------DTDALPALLVYK-GGELI 148 (175)
T ss_pred CcEEEEEEECCCCchHHHHHH-HH--HHHHHHCC-CeEEEEEeccch-hhHHhC--------CCCCCCEEEEEE-CCEEE
Confidence 359999999999999999976 33 23444332 578899999865 555555 888999998886 58877
Q ss_pred cc
Q 003187 218 MG 219 (840)
Q Consensus 218 ~~ 219 (840)
..
T Consensus 149 ~~ 150 (175)
T cd02987 149 GN 150 (175)
T ss_pred EE
Confidence 54
No 96
>PLN02309 5'-adenylylsulfate reductase
Probab=97.84 E-value=2.8e-05 Score=89.73 Aligned_cols=72 Identities=19% Similarity=0.356 Sum_probs=55.5
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e-e~pd~~~~y~~~~~~~~g~~G~P~~vfl 210 (840)
+.+.++|++||.|+++||+.|+.|+. .|. ++++.++. ++..++||.+ +..++.+. ..++.++||++|+
T Consensus 360 ~~~~~~k~vlV~FyApWC~~Cq~m~p-~~e--~LA~~~~~~~V~f~kVD~d~~~~~la~~-------~~~I~~~PTil~f 429 (457)
T PLN02309 360 KLENRKEPWLVVLYAPWCPFCQAMEA-SYE--ELAEKLAGSGVKVAKFRADGDQKEFAKQ-------ELQLGSFPTILLF 429 (457)
T ss_pred HhhcCCCeEEEEEECCCChHHHHHHH-HHH--HHHHHhccCCeEEEEEECCCcchHHHHh-------hCCCceeeEEEEE
Confidence 34578999999999999999999987 354 67777754 5999999998 54444321 1288999999999
Q ss_pred CCCC
Q 003187 211 SPDL 214 (840)
Q Consensus 211 ~p~g 214 (840)
.+..
T Consensus 430 ~~g~ 433 (457)
T PLN02309 430 PKNS 433 (457)
T ss_pred eCCC
Confidence 7654
No 97
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.82 E-value=4.7e-05 Score=87.97 Aligned_cols=69 Identities=16% Similarity=0.301 Sum_probs=52.6
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCc-c-HHHHHHHHHHHhcCCCCCCcEEEEC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERP-D-VDKVYMTYVQALYGGGGWPLSVFLS 211 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p-d-~~~~y~~~~~~~~g~~G~P~~vfl~ 211 (840)
++.+|||||.|+++||+.|+.|+.. | +++++.+... +..++||.+..+ + ..+.| ++.++||++|+.
T Consensus 368 ~~~~k~VLV~FyApWC~~Ck~m~P~-~--eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~--------~I~~~PTii~Fk 436 (463)
T TIGR00424 368 EERKEAWLVVLYAPWCPFCQAMEAS-Y--LELAEKLAGSGVKVAKFRADGDQKEFAKQEL--------QLGSFPTILFFP 436 (463)
T ss_pred hcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCcEEEEEECCCCccHHHHHHc--------CCCccceEEEEE
Confidence 5689999999999999999999874 5 6777777643 667777777543 2 22233 888999999997
Q ss_pred CCC
Q 003187 212 PDL 214 (840)
Q Consensus 212 p~g 214 (840)
.+.
T Consensus 437 ~g~ 439 (463)
T TIGR00424 437 KHS 439 (463)
T ss_pred CCC
Confidence 764
No 98
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.82 E-value=6.7e-05 Score=74.89 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=51.4
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH--------------HHHH
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQA 197 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~--------------~~~~ 197 (840)
.+.-++|+++|.|+++||+.|+.... .|. ++++.+++ .+..|-|+.++.++....|.+ .+..
T Consensus 56 l~~~~~k~~~l~f~a~~C~~C~~~~~-~l~--~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 132 (173)
T PRK03147 56 LKDLKGKGVFLNFWGTWCKPCEKEMP-YMN--ELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID 132 (173)
T ss_pred HHHcCCCEEEEEEECCcCHHHHHHHH-HHH--HHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence 33346899999999999999987542 222 33333333 354555554433321111111 1122
Q ss_pred hcCCCCCCcEEEECCCCceecc
Q 003187 198 LYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 198 ~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
..|+.++|++++++++|+++..
T Consensus 133 ~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 133 AYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HcCCCCcCeEEEECCCCcEEEE
Confidence 3488999999999999999854
No 99
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.81 E-value=0.0013 Score=73.45 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=96.5
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHH-HHHHHHHH
Q 003187 548 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF-LISGLLDL 626 (840)
Q Consensus 548 a~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~-~i~aLl~L 626 (840)
...++.+++ ++|++.+.++++++.........|++.| ......-.+-|-.+ .+.-|+.+
T Consensus 77 ~~~y~~t~d----------------~~y~~~~~~~a~~~l~~~~~~~~G~~~~----~~~~~~~~wiD~~~M~~p~l~~~ 136 (336)
T PF07470_consen 77 LDLYERTGD----------------EKYKDAAIQAADWLLARRPRTSDGGFWH----NRPYPNQVWIDGMYMNLPFLAWA 136 (336)
T ss_dssp HHHHHHH-T----------------HHHHHHHHHHHHHHHHTSCBECTGCBEC----TTTSTTEEETTHHHHHHHHHHHH
T ss_pred HHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCCCCCCcccc----CCCCCCceeeccccccHHHHHHH
Confidence 447788887 8999999999999888887655687876 11222234456554 77788889
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHH
Q 003187 627 YEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYY 706 (840)
Q Consensus 627 YeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y 706 (840)
++.|||++|++.|.+-+....++.+|+++|-|+-.-.... .....+.-=--||+=++..|.++.+.+.++ ...
T Consensus 137 ~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~-----~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~--~~~ 209 (336)
T PF07470_consen 137 GKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQG-----YADWSDSFWSRGNGWAIYGLAEVLEYLPED--HPE 209 (336)
T ss_dssp HHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTS-----SSTTST--BHHHHHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCC-----CcCcccccCcchhhHHHHHHHHHHHHhcch--hhh
Confidence 9999999999999999999999999999887764221100 000000000125666777788888887541 333
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003187 707 RQNAEHSLAVFETRLKDM 724 (840)
Q Consensus 707 ~~~A~~~l~~~~~~i~~~ 724 (840)
++...++++.+...+.+.
T Consensus 210 ~~~~~~~~~~~~~~l~~~ 227 (336)
T PF07470_consen 210 RDELLEIAKKLADALARY 227 (336)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444555555555555443
No 100
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.78 E-value=4.6e-05 Score=69.40 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=55.7
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC--CCCcEEEECCC
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG--GWPLSVFLSPD 213 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~--G~P~~vfl~p~ 213 (840)
++|+++.|+++||..|+.|.. .| .+|++.+...+..++||.++.+++.+.| |.. ++|+.+++...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~-~~--~~vA~~~~~~v~f~~vd~~~~~~~~~~~--------~i~~~~~P~~~~~~~~ 78 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRE-RF--KEVAKKFKGKLLFVVVDADDFGRHLEYF--------GLKEEDLPVIAIINLS 78 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHH-HH--HHHHHHhCCeEEEEEEchHhhHHHHHHc--------CCChhhCCEEEEEecc
Confidence 899999999999999999976 33 5788888878999999999888776655 777 99999999984
No 101
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.73 E-value=9.5e-05 Score=80.28 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=47.6
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCc---cHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP---DVDKVYMTYVQALYGGGGWPLSVFLS 211 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p---d~~~~y~~~~~~~~g~~G~P~~vfl~ 211 (840)
.-.+|+++|.|+++||+.|+.|.. ++ .++++..+-.++.|.+|.+..+ .++. -....+. .|+.++|+++|++
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~~P-~L--~~la~~yg~~Vi~VsvD~~~~~~fp~~~~-d~~la~~-~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQAP-IL--QAFEDRYGIEVLPVSVDGGPLPGFPNARP-DAGQAQQ-LKIRTVPAVFLAD 237 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHHhH-HH--HHHHHHcCcEEEEEeCCCCccccCCcccC-CHHHHHH-cCCCcCCeEEEEE
Confidence 345899999999999999999764 22 2333333223555666654322 1110 0111222 3899999999999
Q ss_pred CCCcee
Q 003187 212 PDLKPL 217 (840)
Q Consensus 212 p~g~~~ 217 (840)
++|+.+
T Consensus 238 ~~~~~v 243 (271)
T TIGR02740 238 PDPNQF 243 (271)
T ss_pred CCCCEE
Confidence 965544
No 102
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.4e-05 Score=80.75 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=53.6
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl 210 (840)
.++.-+|.|+|+|+++||+.|+.... +|+ .+-|+ .+|.+|||+++-......+ |+...||++|+
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP-~Fs-----~lankYp~aVFlkVdVd~c~~taa~~--------gV~amPTFiff 81 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAP-IFS-----DLANKYPGAVFLKVDVDECRGTAATN--------GVNAMPTFIFF 81 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhh-HHH-----HhhhhCcccEEEEEeHHHhhchhhhc--------CcccCceEEEE
Confidence 45567899999999999999999864 444 34444 7999999999877766554 89999999998
Q ss_pred CCC
Q 003187 211 SPD 213 (840)
Q Consensus 211 ~p~ 213 (840)
-..
T Consensus 82 ~ng 84 (288)
T KOG0908|consen 82 RNG 84 (288)
T ss_pred ecC
Confidence 653
No 103
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.70 E-value=4.9e-05 Score=66.47 Aligned_cols=65 Identities=18% Similarity=0.073 Sum_probs=44.8
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTY 222 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~tY 222 (840)
|.|+++||++|+.|.. .=.++++-++..+..++|| .++....| |+.+.|++++ ||+.++.| .
T Consensus 3 i~~~a~~C~~C~~~~~---~~~~~~~e~~~~~~~~~v~---~~~~a~~~--------~v~~vPti~i---~G~~~~~G-~ 64 (76)
T TIGR00412 3 IQIYGTGCANCQMTEK---NVKKAVEELGIDAEFEKVT---DMNEILEA--------GVTATPGVAV---DGELVIMG-K 64 (76)
T ss_pred EEEECCCCcCHHHHHH---HHHHHHHHcCCCeEEEEeC---CHHHHHHc--------CCCcCCEEEE---CCEEEEEe-c
Confidence 6789999999999975 2245555565567778887 23322223 8899999998 88888443 3
Q ss_pred cCC
Q 003187 223 FPP 225 (840)
Q Consensus 223 ~p~ 225 (840)
.|.
T Consensus 65 ~~~ 67 (76)
T TIGR00412 65 IPS 67 (76)
T ss_pred cCC
Confidence 453
No 104
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.69 E-value=0.00013 Score=74.66 Aligned_cols=96 Identities=7% Similarity=0.016 Sum_probs=68.3
Q ss_pred CCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEE------EEEcCCCCccHHHHHH
Q 003187 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS------IKVDREERPDVDKVYM 192 (840)
Q Consensus 119 ~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~------vkvD~ee~pd~~~~y~ 192 (840)
+.++.++|..+.+. ||..+|.|.|+||..|+. +.|-+.++=.++|.. +-||.++.+.....|.
T Consensus 45 ~~~~y~~~~~~~l~-----GKV~lvn~~Aswc~~c~~------e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fV 113 (184)
T TIGR01626 45 KDTVYQPWGSAELA-----GKVRVVHHIAGRTSAKEX------NASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFV 113 (184)
T ss_pred CcccceeccHHHcC-----CCEEEEEEEecCCChhhc------cchHHHHHHHcCCCcccccceEEEECccchhhHHHHH
Confidence 77999999665554 999999999999999987 456666665567877 7788776543322221
Q ss_pred H---------------------HHHHhcCCCCCCcE-EEECCCCceeccc-cccCC
Q 003187 193 T---------------------YVQALYGGGGWPLS-VFLSPDLKPLMGG-TYFPP 225 (840)
Q Consensus 193 ~---------------------~~~~~~g~~G~P~~-vfl~p~g~~~~~~-tY~p~ 225 (840)
+ ......|+.|.|.+ +|+|++|++.+.- |+++.
T Consensus 114 k~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ 169 (184)
T TIGR01626 114 KSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSD 169 (184)
T ss_pred HHHHHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCH
Confidence 1 12223477899888 7999999988763 45553
No 105
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.65 E-value=0.0001 Score=62.10 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=44.9
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+..|+++||++|+.++. .+ .++++ .+.++...++|.++.+++.+.| |+.+.|++++ +|+.++.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l--~~l~~-~~~~i~~~~id~~~~~~l~~~~--------~i~~vPti~i---~~~~~~~ 65 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQ-AA--NRIAA-LNPNISAEMIDAAEFPDLADEY--------GVMSVPAIVI---NGKVEFV 65 (67)
T ss_pred EEEEECCCCCCcHHHHH-HH--HHHHH-hCCceEEEEEEcccCHhHHHHc--------CCcccCEEEE---CCEEEEe
Confidence 34589999999999975 33 33333 2346778888998888776655 8889999876 4566654
No 106
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.64 E-value=0.0019 Score=66.39 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC-C-----CCC--CCC
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-G-----PSK--APG 611 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~-g-----~~~--~~~ 611 (840)
+|.+|+.|++||.+++| ++|+++|.++.+...-.. +.|++...+.+ + =+. ..-
T Consensus 32 QG~a~s~l~RAy~~t~d----------------~~Yl~aA~~al~~f~~~~---~~GG~~~~~~~~~~wyeEYp~~p~s~ 92 (189)
T PF06662_consen 32 QGQAISVLARAYQLTGD----------------EKYLDAAKKALNSFKVPV---EEGGVLATFKNKYPWYEEYPTTPPSY 92 (189)
T ss_pred HHHHHHHHHHHHHhHCC----------------HHHHHHHHHHHHHhcChH---hhCCeeEEecCCcEeEeecCCCCCCE
Confidence 57889999999999998 899999999998876443 23555544433 1 122 234
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHH
Q 003187 612 FLDDYAFLISGLLDLYEFGSGTKWLVWAI---ELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 688 (840)
Q Consensus 612 ~leDyA~~i~aLl~LYeaTgd~~yL~~A~---~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a 688 (840)
.|+.+.+.+.||-+++..|++.+..+.=. +-++.++..| |...+.+|+-..- . ..+ .-.-+-+.=..+.+
T Consensus 93 VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~y-D~G~wS~Ydl~h~--~-~~~---~~~~a~~~YH~lHi 165 (189)
T PF06662_consen 93 VLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLY-DTGSWSRYDLRHF--T-LGN---APNIARWDYHRLHI 165 (189)
T ss_pred EeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhcccc--c-ccc---CcCcCcchHHHHHH
Confidence 79999999999999999999987654433 3344444433 6544456663210 0 000 00112233445778
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHH
Q 003187 689 INLVRLASIVAGSKSDYYRQNAEH 712 (840)
Q Consensus 689 ~~LlrL~~lt~~~~~~~y~~~A~~ 712 (840)
..|..|+.+|++ +.+++.|++
T Consensus 166 ~qL~~L~~it~d---~~f~~~a~r 186 (189)
T PF06662_consen 166 QQLKWLYSITGD---PIFKEYAER 186 (189)
T ss_pred HHHHHHHHhcCC---HHHHHHHHH
Confidence 889999999985 777777753
No 107
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.64 E-value=0.00011 Score=66.32 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=56.5
Q ss_pred HHHHhcCCCEEEE-EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003187 132 AEARKRDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (840)
Q Consensus 132 ~~Ak~e~KpI~l~-~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl 210 (840)
+.+++-++||=|. |.++||+||..+..-. .++++ .+.++-..++|+++.+++...| |+.+.|++++
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~---~~l~~-~~~~i~~~~vd~~~~~e~a~~~--------~V~~vPt~vi- 71 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQAL---NLMAV-LNPNIEHEMIDGALFQDEVEER--------GIMSVPAIFL- 71 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHH---HHHHH-HCCCceEEEEEhHhCHHHHHHc--------CCccCCEEEE-
Confidence 4455778886555 7889999999987633 66664 3446888889999888888777 8889999986
Q ss_pred CCCCceeccc
Q 003187 211 SPDLKPLMGG 220 (840)
Q Consensus 211 ~p~g~~~~~~ 220 (840)
||+.++.|
T Consensus 72 --dG~~~~~G 79 (89)
T cd03026 72 --NGELFGFG 79 (89)
T ss_pred --CCEEEEeC
Confidence 78877653
No 108
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.63 E-value=0.00015 Score=75.97 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCCEEEE-EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~-~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
++..+..++.++||.|. |+++||++|+.|.. .+ .+++.. +.+...+++|.++.|++...| |+.+.|+
T Consensus 122 ~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~-~l--~~l~~~-~~~i~~~~vD~~~~~~~~~~~--------~V~~vPt 189 (215)
T TIGR02187 122 EKTVELLQSLDEPVRIEVFVTPTCPYCPYAVL-MA--HKFALA-NDKILGEMIEANENPDLAEKY--------GVMSVPK 189 (215)
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCCCcHHHHH-HH--HHHHHh-cCceEEEEEeCCCCHHHHHHh--------CCccCCE
Confidence 44466666678898777 89999999999873 22 223322 345666789999999888776 8899999
Q ss_pred EEEECCCCcee
Q 003187 207 SVFLSPDLKPL 217 (840)
Q Consensus 207 ~vfl~p~g~~~ 217 (840)
++|.. +|+.+
T Consensus 190 l~i~~-~~~~~ 199 (215)
T TIGR02187 190 IVINK-GVEEF 199 (215)
T ss_pred EEEec-CCEEE
Confidence 99864 55543
No 109
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.61 E-value=0.0063 Score=76.01 Aligned_cols=251 Identities=19% Similarity=0.254 Sum_probs=149.8
Q ss_pred cCCCCCCCCCcchHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-----CCceEeeccCCccccccccc
Q 003187 366 VDERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-----GGEIFSAEDADSAETEGATR 439 (840)
Q Consensus 366 vD~~W~vPHFEKMLYD-NA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~-----~Ggfysa~DADs~~~~~~~~ 439 (840)
.+..|.+-.-.=-||+ -|-++.+|+..|++|+++.|.+.|+++++.+...+... +-|+|+
T Consensus 476 ~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~-------------- 541 (825)
T cd04792 476 DGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFS-------------- 541 (825)
T ss_pred CCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEe--------------
Confidence 3446765456667888 89999999999999999999999999999988766432 122332
Q ss_pred ccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHH
Q 003187 440 KKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKL 519 (840)
Q Consensus 440 ~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL 519 (840)
|.-|-.|+- ...+.++ + .+++.+.++.+.+.+
T Consensus 542 G~aGi~~~L----------~~l~~~~------------------------------------~--~~~~~~~a~~~~~~l 573 (825)
T cd04792 542 GLGGILYAL----------THLGKLL------------------------------------K--DDRLLNLAKEILDLI 573 (825)
T ss_pred chhHHHHHH----------HHHHHHc------------------------------------C--CHHHHHHHHHHHHHH
Confidence 233433320 0011110 0 011222222222222
Q ss_pred HhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE
Q 003187 520 FDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ 599 (840)
Q Consensus 520 ~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~ 599 (840)
.+.-. ..+..| ++.++-| ++.+|...++.+++ +.+++.|+++++++.+.....+.+ ..
T Consensus 574 ~~~~~--~~~~~D--~~~G~aG-ii~~Ll~l~~~~~~----------------~~~l~~a~~~~~~l~~~~~~~~~~-~~ 631 (825)
T cd04792 574 DELIE--KDEKLD--FISGAAG-LILVLLSLYELFLS----------------ERFLDLALKCGDHLLENASNEDGG-IG 631 (825)
T ss_pred HHhhc--cccCCC--EeeecHH-HHHHHHHHHhccCC----------------hHHHHHHHHHHHHHHHhhhhccCC-cc
Confidence 22111 111222 3444444 45677788888876 789999999999998765432222 21
Q ss_pred EeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCC
Q 003187 600 HSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA 679 (840)
Q Consensus 600 ~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a 679 (840)
..+.....++..+.+=.+.+|+.+|++|+|++|++.|.++.+.....| ++..+.|.. ... . .....
T Consensus 632 ---~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~-~~~~~~w~~--~~~-~-------~~~~~ 697 (825)
T cd04792 632 ---PAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLF-SEEGWNWPR--KDG-N-------SFSAA 697 (825)
T ss_pred ---cccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc-CHhhcCCCC--cCc-C-------CCCCc
Confidence 122234568889999999999999999999999999999998766555 333333331 100 0 00011
Q ss_pred CCChHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHH
Q 003187 680 EPSGNSVSVINLVRLASI--VAGSKSDYYRQNAEHSLAVF 717 (840)
Q Consensus 680 ~PS~Ns~~a~~LlrL~~l--t~~~~~~~y~~~A~~~l~~~ 717 (840)
-=.|.+=.+..+++++.+ .++ +.+.+.++.++...
T Consensus 698 WChG~~GI~lal~~~~~~~~~~d---~~~~~~i~~~~~~~ 734 (825)
T cd04792 698 WCHGAPGILLARLELLKFNDLDD---EELKEEIEIALKTT 734 (825)
T ss_pred ccCCcHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHH
Confidence 123344455667777877 342 56777666666554
No 110
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.60 E-value=0.00014 Score=69.18 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=53.0
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCC-----CCccHHHHHHHH---------
Q 003187 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE-----ERPDVDKVYMTY--------- 194 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~e-----e~pd~~~~y~~~--------- 194 (840)
.+..+.-.+|+++|.|+++||+.|...... + .++.+.+. +.+..|-|..+ ..++.-+.|.+.
T Consensus 15 ~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~-l--~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (126)
T cd03012 15 PLSLAQLRGKVVLLDFWTYCCINCLHTLPY-L--TDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAN 91 (126)
T ss_pred ccCHHHhCCCEEEEEEECCCCccHHHHHHH-H--HHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEE
Confidence 345555578999999999999999876331 1 23333333 24555555432 223222222211
Q ss_pred -----HHHhcCCCCCCcEEEECCCCceecc
Q 003187 195 -----VQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 195 -----~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+....++.++|+++++|++|++++.
T Consensus 92 D~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 92 DNDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 1122477899999999999998864
No 111
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=97.58 E-value=0.018 Score=63.09 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=101.9
Q ss_pred hhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCCCCCCcc
Q 003187 536 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGFLD 614 (840)
Q Consensus 536 ltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~-~~~g~~~~~~~le 614 (840)
++.+-| ++.+|..+++.+++ +.+.+.+.++.+++.+......++ ..+. .........++..
T Consensus 98 ~~G~aG-~~~~ll~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~g~~H 159 (343)
T cd04434 98 LSGLAG-LLLALLLLYKTFGE----------------EIFLELIRKILDYLLELGKNGDGK-IRWPMYFPEGRVNLGLAH 159 (343)
T ss_pred eechHH-HHHHHHHHHHhcCC----------------cCHHHHHHHHHHHHHHhhhhccCC-CceeeeccCCccccchhh
Confidence 444444 35667777877765 679999999999998877543333 2221 1111223457888
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHH
Q 003187 615 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 694 (840)
Q Consensus 615 DyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL 694 (840)
..+=.+.+|+.+++.+.++.+.+.++.+.......+ +..++.+....... .......--.|.+=.+..|+++
T Consensus 160 G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~wChG~~Gi~~~l~~~ 231 (343)
T cd04434 160 GLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQ-DDSGGFWWPSRSNG-------GNRFLVAWCHGAPGILLALLLA 231 (343)
T ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc-CCCCCCCCCCCCCC-------CccccceecCCChhHHHHHHHH
Confidence 888899999999999988888888888887766555 44444343211100 0111122334556677788899
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003187 695 ASIVAGSKSDYYRQNAEHSLAVFETRLK 722 (840)
Q Consensus 695 ~~lt~~~~~~~y~~~A~~~l~~~~~~i~ 722 (840)
+.++++ +.+.+.+++++........
T Consensus 232 ~~~~~~---~~~~~~~~~~~~~~~~~~~ 256 (343)
T cd04434 232 YKALGD---DKYDEAAEKALELAWKRGL 256 (343)
T ss_pred HHHcCc---HHHHHHHHHHHHHHHHhhh
Confidence 999885 6788888888776655443
No 112
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.54 E-value=0.00021 Score=73.36 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=49.9
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH-------------HHHHhcCCC
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT-------------YVQALYGGG 202 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~-------------~~~~~~g~~ 202 (840)
..+||++|.|+++||+.|+.+... ++ ++.+..+.+++.|..| ...+. +.|++ .....+++.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~-l~--~~~~~~~~~vv~Is~~--~~~~~-~~~~~~~~~~~~~~~~~~~i~~~y~v~ 145 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPI-IK--SIARAEETDVVMISDG--TPAEH-RRFLKDHELGGERYVVSAEIGMAFQVG 145 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHH-HH--HHHHhcCCcEEEEeCC--CHHHH-HHHHHhcCCCcceeechhHHHHhccCC
Confidence 468999999999999999987542 21 2333333456666533 11121 22211 111234788
Q ss_pred CCCcEEEECCCCceecc
Q 003187 203 GWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~ 219 (840)
+.|+++++|++|+..+.
T Consensus 146 ~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 146 KIPYGVLLDQDGKIRAK 162 (189)
T ss_pred ccceEEEECCCCeEEEc
Confidence 99999999999999875
No 113
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.53 E-value=0.00016 Score=91.90 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=59.2
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEc-----CCCCc-cHHHHH--------------HHHH
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVD-----REERP-DVDKVY--------------MTYV 195 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD-----~ee~p-d~~~~y--------------~~~~ 195 (840)
.+|+|+|+|+++||+.|+.+.. .+ .++.+..++ .|+.|-|. .++.+ ++.+.. .+..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P-~L--~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~ 495 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLP-DL--EFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLW 495 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhH-HH--HHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHH
Confidence 5999999999999999997543 12 233333332 37666663 22111 111111 1112
Q ss_pred HHhcCCCCCCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHHHHHHH
Q 003187 196 QALYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDAWDK 247 (840)
Q Consensus 196 ~~~~g~~G~P~~vfl~p~g~~~~~~-tY~p~~~~~~~~~f~~~L~~i~~~~~~ 247 (840)
+ ..++.|+|+++|++++|+++... +... .+.+.++++.+...|.+
T Consensus 496 ~-~~~V~~iPt~ilid~~G~iv~~~~G~~~------~~~l~~~l~~~l~~~~~ 541 (1057)
T PLN02919 496 R-ELGVSSWPTFAVVSPNGKLIAQLSGEGH------RKDLDDLVEAALQYYGE 541 (1057)
T ss_pred H-hcCCCccceEEEECCCCeEEEEEecccC------HHHHHHHHHHHHHhhcc
Confidence 2 24889999999999999988652 1122 12455556555555543
No 114
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=97.50 E-value=0.019 Score=65.14 Aligned_cols=142 Identities=8% Similarity=-0.067 Sum_probs=96.5
Q ss_pred HHHHHHHHHHh-hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-----------cCCCCCCCC
Q 003187 544 ISSFARASKIL-KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-----------RNGPSKAPG 611 (840)
Q Consensus 544 I~ALa~A~~~~-~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~-----------~~g~~~~~~ 611 (840)
+++|+.+++.. .+ +.+++.++++.+|+..++.+...+.+.... ..+.....+
T Consensus 178 ~~~L~~~~~~~~~~----------------~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 241 (382)
T cd04793 178 LALLALAKERGIRV----------------DGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDA 241 (382)
T ss_pred HHHHHHHHHcCCCc----------------CChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCC
Confidence 67888888765 43 689999999999998877554333222110 011112346
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHH
Q 003187 612 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 691 (840)
Q Consensus 612 ~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~L 691 (840)
+...-+=.+.+++.++++++|+.+.+.|.++.+.+...... .+ . ..+...=-|.+=.+..|
T Consensus 242 wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~-----~------------~~~~~lChG~~G~~~~l 302 (382)
T cd04793 242 WCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQ--LS-----K------------LISPTLCHGLAGLLFIF 302 (382)
T ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhh--hc-----c------------CCCCCcCccHHHHHHHH
Confidence 66777778899999999999999999999888776543210 00 0 00112334556667889
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 003187 692 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 723 (840)
Q Consensus 692 lrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 723 (840)
++++..|++ +++.+.++.+++.+.....+
T Consensus 303 ~~~~~~~~~---~~~~~~a~~~~~~~l~~~~~ 331 (382)
T cd04793 303 YLLYKDTNT---NEFKSALEYLLNQIISSYSE 331 (382)
T ss_pred HHHHHHhCC---cHHHHHHHHHHHHHHHHhcc
Confidence 999999986 67999999888887666543
No 115
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.45 E-value=0.0002 Score=75.00 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=50.6
Q ss_pred hcCCCEEEEEe--ccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003187 136 KRDVPIFLSIG--YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (840)
Q Consensus 136 ~e~KpI~l~~g--~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p 212 (840)
+.++.|++.+. ++||++|+.|.. ++ +++++...+ .++.|++|.++.+++.+.| ++.+.||++|+..
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p-~l--~~la~~~~~~~i~~v~vd~~~~~~l~~~~--------~V~~~Pt~~~f~~ 86 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQ-LL--EELSEVSPKLKLEIYDFDTPEDKEEAEKY--------GVERVPTTIILEE 86 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHH-HH--HHHHhhCCCceEEEEecCCcccHHHHHHc--------CCCccCEEEEEeC
Confidence 34666666444 499999999986 33 345555543 3678888888899988877 8999999999874
Q ss_pred CCcee
Q 003187 213 DLKPL 217 (840)
Q Consensus 213 ~g~~~ 217 (840)
|+.+
T Consensus 87 -g~~~ 90 (215)
T TIGR02187 87 -GKDG 90 (215)
T ss_pred -Ceee
Confidence 5544
No 116
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.013 Score=67.10 Aligned_cols=174 Identities=20% Similarity=0.216 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCC--CeEEEE-ecCCCCC---CCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHH
Q 003187 334 ASEGQKMVLFTLQCMAKGGIHDHVG--GGFHRY-SVDERWH---VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRD 407 (840)
Q Consensus 334 ~~~~~~~a~~TL~~Ma~GGi~D~v~--GGF~RY-svD~~W~---vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~ 407 (840)
++...+-+..+.+..++ +.|..| ||+++= --..+|. .-|| ||--.-|+.....+|++||....++++.+
T Consensus 84 dp~Lekr~D~vi~~~a~--~QdedGYl~~~~q~~~pe~Rw~nlr~~He---lY~aghLieg~va~~qaTGkr~lldV~~r 158 (589)
T COG3533 84 DPELEKRIDEVVEELAR--AQDEDGYLGGWFQADFPEERWGNLRPNHE---LYCAGHLIEGGVAAHQATGKRRLLDVVCR 158 (589)
T ss_pred CHHHHHHHHHHHHHHHH--hhccCCcccceeeccCchhhhhccccchH---HHHhHHHHhhhhHHHHhhCcchHHHHHHH
Confidence 56777788888888887 778776 676651 1255675 3455 99999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcce
Q 003187 408 ILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNV 487 (840)
Q Consensus 408 t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nv 487 (840)
-.+|+.+-+ .|+- | . ..|.+
T Consensus 159 lADhi~tvf-gp~~------~--------q----------------------------~~g~~----------------- 178 (589)
T COG3533 159 LADHIATVF-GPEE------D--------Q----------------------------VPGYC----------------- 178 (589)
T ss_pred HHHhhhhhc-Cccc------c--------c----------------------------ccccc-----------------
Confidence 999998744 1110 0 0 01111
Q ss_pred eeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 003187 488 LIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPV 567 (840)
Q Consensus 488 L~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~ 567 (840)
..+=+-.||++.|+++|+
T Consensus 179 ---------------------------------------------------gH~eielAl~~Ly~~Tg~----------- 196 (589)
T COG3533 179 ---------------------------------------------------GHPEIELALAELYRLTGD----------- 196 (589)
T ss_pred ---------------------------------------------------CCCchhHHHHHHHHHhcC-----------
Confidence 112233578999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 003187 568 VGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQD 647 (840)
Q Consensus 568 ~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~ 647 (840)
++||+.|+...+ ....+| +. .+|.-...++..-..+++.|+.+||+.+||+.+...+..|++.+.
T Consensus 197 -----~rYL~LA~~Fi~---~rg~~P-----~~--~rg~e~~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t 261 (589)
T COG3533 197 -----QRYLDLARRFIH---QRGVEP-----LA--QRGDELEGGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVT 261 (589)
T ss_pred -----hHHHHHHHHHHH---HhccCh-----hh--cCchhhhhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 899999887553 333332 11 122222256777889999999999999999999999999998876
Q ss_pred HH
Q 003187 648 EL 649 (840)
Q Consensus 648 ~~ 649 (840)
++
T Consensus 262 ~k 263 (589)
T COG3533 262 TR 263 (589)
T ss_pred hh
Confidence 55
No 117
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.34 E-value=0.0024 Score=75.66 Aligned_cols=135 Identities=19% Similarity=0.093 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC----CCCCCC---
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP----SKAPGF--- 612 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~----~~~~~~--- 612 (840)
-+-.++|++.++..++| +++.+.+.++.+.|.+.-.+ +| ++..+.... .....-
T Consensus 62 ~g~wl~a~a~~~~~~~D----------------~~l~~~~d~~V~~l~~~Q~~--dG-Yl~~~~~~~~~~~~~~w~~~~h 122 (520)
T PF07944_consen 62 VGKWLEAAAYAYAYTGD----------------PELKAKADEIVDELAAAQQP--DG-YLGTYPEERNFNPDDRWAPDMH 122 (520)
T ss_pred HHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHhccC--Cc-eecccccccccccccCCCCCcc
Confidence 37889999999999988 78999999999999887653 44 556554332 112222
Q ss_pred -cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cccccCCccccCCCCCCccccccccCCCCCCCChHHHHH
Q 003187 613 -LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL---FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 688 (840)
Q Consensus 613 -leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~---F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a 688 (840)
++....++.||++.|++||+++.|+.|.++++.+.+. |-+ +.+ ...-.| +...+.
T Consensus 123 e~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~-~~~-------------------~~~~~~-~~~~i~ 181 (520)
T PF07944_consen 123 ELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGP-EPG-------------------QKMGYP-EHGGIN 181 (520)
T ss_pred ceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCH-HHh-------------------hccccc-ccchHH
Confidence 5666889999999999999999999999999998333 211 100 001112 223455
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 003187 689 INLVRLASIVAGSKSDYYRQNAEHSLAVF 717 (840)
Q Consensus 689 ~~LlrL~~lt~~~~~~~y~~~A~~~l~~~ 717 (840)
..|.+||++||+ ++|++.|+..+...
T Consensus 182 ~~l~~LY~~Tgd---~~yL~lA~~f~~~~ 207 (520)
T PF07944_consen 182 EALVRLYEITGD---ERYLDLAEYFVDQR 207 (520)
T ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHh
Confidence 899999999996 89999998877654
No 118
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.34 E-value=0.0004 Score=79.89 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=54.0
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~ 211 (840)
...+|+|+|.|+++||+.|+.|... | .++++.++. .+..+++|.+.+.- .. | ++.++|+.+|+.
T Consensus 361 ~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~i~~~~id~~~n~~-~~-~--------~i~~~Pt~~~~~ 427 (462)
T TIGR01130 361 LDETKDVLVEFYAPWCGHCKNLAPI-Y--EELAEKYKDAESDVVIAKMDATANDV-PP-F--------EVEGFPTIKFVP 427 (462)
T ss_pred ccCCCeEEEEEECCCCHhHHHHHHH-H--HHHHHHhhcCCCcEEEEEEECCCCcc-CC-C--------CccccCEEEEEe
Confidence 4679999999999999999999873 3 557777876 68899999986532 22 3 678999999997
Q ss_pred CCCc
Q 003187 212 PDLK 215 (840)
Q Consensus 212 p~g~ 215 (840)
.+++
T Consensus 428 ~~~~ 431 (462)
T TIGR01130 428 AGKK 431 (462)
T ss_pred CCCC
Confidence 6654
No 119
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.30 E-value=0.00066 Score=65.97 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=53.1
Q ss_pred HHHHhcCCCEEEEEecc-CChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHH--------------HHH
Q 003187 132 AEARKRDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM--------------TYV 195 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~-wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~--------------~~~ 195 (840)
..+.-.+|+++|.|+++ ||+.|+..-. .=.++.+... +++..|-|..+..+.+.+... .+.
T Consensus 22 ~l~~~~gk~~vv~f~~~~~Cp~C~~~~p---~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 98 (146)
T PF08534_consen 22 SLSDFKGKPVVVNFWASAWCPPCRKELP---YLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALA 98 (146)
T ss_dssp EGGGGTTSEEEEEEESTTTSHHHHHHHH---HHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHH
T ss_pred cHHHhCCCeEEEEEEccCCCCcchhhhh---hHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHH
Confidence 34446799999999999 9999998653 2223333333 334444444443333332221 112
Q ss_pred HHhcCCC---------CCCcEEEECCCCceeccc
Q 003187 196 QALYGGG---------GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 196 ~~~~g~~---------G~P~~vfl~p~g~~~~~~ 220 (840)
+. .|.. ++|+++++|++|++.+..
T Consensus 99 ~~-~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 99 KA-LGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp HH-TTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred HH-hCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 22 3555 999999999999998864
No 120
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.12 E-value=0.0091 Score=65.69 Aligned_cols=148 Identities=17% Similarity=0.184 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF-LISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 651 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~-~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~ 651 (840)
++|++.|+++++++..+. ..+.|+|.|... -+ .-.+.|=-| ...-++.+-+.+++++|.+.+..-+....++..
T Consensus 98 ~~Yl~~a~~~a~~l~~~~-Rt~eG~f~H~~~--~p--~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~ 172 (357)
T COG4225 98 PRYLEAAIKLASWLVHEP-RTKEGGFQHKVK--YP--HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLR 172 (357)
T ss_pred HHHHHHHHHHHHHHhhCc-ccCCCccccccC--ch--hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcc
Confidence 899999999999999988 446688998643 11 112333333 344567788999999999999999999999999
Q ss_pred cccCCccccCCCC-CCccccccccCCCCCCC----ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 003187 652 DREGGGYFNTTGE-DPSVLLRVKEDHDGAEP----SGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 726 (840)
Q Consensus 652 D~~~Ggyf~t~~~-~~~l~~R~k~~~D~a~P----S~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 726 (840)
|+++|-||- .++ +.. .++....-+- | -+|+=.+.+|..+=.+...+ ++ -+....++++.....|.++-.
T Consensus 173 Dp~TGL~YH-~wd~~~~--~~w~~~~sG~-~~fWaRg~gW~~mal~d~le~lp~~-~~-~r~~l~~~l~d~v~al~r~Qd 246 (357)
T COG4225 173 DPETGLYYH-GWDEDGT--MPWANNESGE-PAFWARGNGWYAMALADLLELLPED-HP-DRRELLNVLRDLVDALIRYQD 246 (357)
T ss_pred CCCcCceEE-eeccCCC--CccccccCCC-ceeeecccchHHHHHHHHHHhCCCC-Cc-hHHHHHHHHHHHHHHHHHhhc
Confidence 999998883 221 111 1111111221 2 25665666677666666643 22 344455555555555555544
Q ss_pred hHHHH
Q 003187 727 AVPLM 731 (840)
Q Consensus 727 ~~~~~ 731 (840)
....|
T Consensus 247 e~GlW 251 (357)
T COG4225 247 ESGLW 251 (357)
T ss_pred cccch
Confidence 33333
No 121
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.11 E-value=0.00091 Score=63.54 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCEEEEEec--cCCh---hhhhhhhcccCCHHHHHHHhcCeEEEEEcCC-----CCccHHHHHHHHHHH
Q 003187 128 EEAFAEARKRDVPIFLSIGY--STCH---WCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVYMTYVQA 197 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~--~wC~---wC~~me~etf~d~eVa~~ln~~FV~vkvD~e-----e~pd~~~~y~~~~~~ 197 (840)
+.-|.+.-++++.+||.|++ +||. .|+.+..+..+. - ...+..|||.+ +..++.+.|
T Consensus 8 ~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~a------a-~~v~lakVd~~d~~~~~~~~L~~~y------ 74 (116)
T cd03007 8 TVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASA------T-DDLLVAEVGIKDYGEKLNMELGERY------ 74 (116)
T ss_pred hhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhh------c-CceEEEEEecccccchhhHHHHHHh------
Confidence 45677888899999999999 7777 777776433221 1 13778899994 445566666
Q ss_pred hcCCC--CCCcEEEECCC
Q 003187 198 LYGGG--GWPLSVFLSPD 213 (840)
Q Consensus 198 ~~g~~--G~P~~vfl~p~ 213 (840)
|+. |+||+.|+...
T Consensus 75 --~I~~~gyPTl~lF~~g 90 (116)
T cd03007 75 --KLDKESYPVIYLFHGG 90 (116)
T ss_pred --CCCcCCCCEEEEEeCC
Confidence 888 99999888754
No 122
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.02 E-value=0.0062 Score=61.08 Aligned_cols=81 Identities=20% Similarity=0.275 Sum_probs=50.6
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cC--eEEEEEcCC-----CCccHHHHHHHH--------------
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DW--FVSIKVDRE-----ERPDVDKVYMTY-------------- 194 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~--FV~vkvD~e-----e~pd~~~~y~~~-------------- 194 (840)
.+|+++|.|+++||+.|..+..+ + .++.+.+. ++ ||.|-+|.. +.++.-+.|.+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~-l--~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~ 100 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDR-L--NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE 100 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHH-H--HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence 58999999999999999865432 2 23444443 34 444444432 123222333211
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccc
Q 003187 195 VQALYGGGGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~~~~~~ 220 (840)
.....|+.++|.++++|++|++++.+
T Consensus 101 ~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 101 VAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHcCCCcCCcEEEECCCCeEEEee
Confidence 11234788999999999999998764
No 123
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=97.00 E-value=0.0042 Score=60.64 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=69.0
Q ss_pred hHHHHHHH----HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHH---------H
Q 003187 127 GEEAFAEA----RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM---------T 193 (840)
Q Consensus 127 ~~eAl~~A----k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~---------~ 193 (840)
+++|+++| |++.|+++|+.+.+-=.-|...=++++.+++|.+++|+|||.-=-|++.... .+.+. .
T Consensus 6 ~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~-~~~fl~~~~~~~g~~ 84 (136)
T cd02990 6 LEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESN-KARFLSSCTRHFGSV 84 (136)
T ss_pred HHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhh-hhHHHHhhhhhhhHH
Confidence 58999999 9999999999999998888888889999999999999999999999874322 11111 1
Q ss_pred HHHHhc--CCCCCCcEEEECCCCc
Q 003187 194 YVQALY--GGGGWPLSVFLSPDLK 215 (840)
Q Consensus 194 ~~~~~~--g~~G~P~~vfl~p~g~ 215 (840)
+.|... ...-+|...++.+..+
T Consensus 85 a~~~~~~~~~~~fP~~avI~~~~~ 108 (136)
T cd02990 85 AAQTIRNIKTDQLPAILIIMGKRS 108 (136)
T ss_pred HHHHHHhcCcCCCCeEEEEEecCC
Confidence 122221 4678999999987654
No 124
>PTZ00062 glutaredoxin; Provisional
Probab=96.95 E-value=0.0016 Score=67.82 Aligned_cols=71 Identities=7% Similarity=-0.029 Sum_probs=52.3
Q ss_pred HHHHHHHHhcC-CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~-KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.+.+..+++ ..+++.|+++||+.|+.|.. ++ +++++-. .++..++||++ | ++.+.|+
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~-vl--~~l~~~~-~~~~F~~V~~d--------~--------~V~~vPt 65 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMD-VC--NALVEDF-PSLEFYVVNLA--------D--------ANNEYGV 65 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHH-HH--HHHHHHC-CCcEEEEEccc--------c--------CcccceE
Confidence 45555655544 77999999999999999974 33 2333322 36888899987 3 7889999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|+. +|+.+-.
T Consensus 66 fv~~~-~g~~i~r 77 (204)
T PTZ00062 66 FEFYQ-NSQLINS 77 (204)
T ss_pred EEEEE-CCEEEee
Confidence 99996 7787754
No 125
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.94 E-value=0.0012 Score=52.14 Aligned_cols=63 Identities=27% Similarity=0.442 Sum_probs=46.7
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
++.|+.+||++|+.+.. .+.+- +..+.++..+.+|.++.++.... ....+..+.|++++.+++
T Consensus 1 l~~~~~~~c~~c~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRP-VLAEL---ALLNKGVKFEAVDVDEDPALEKE-----LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhh-HHHHH---HhhCCCcEEEEEEcCCChHHhhH-----HHhCCCccccEEEEEeCC
Confidence 46799999999999975 33332 46677899999999877765432 112367899999999887
No 126
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.88 E-value=0.0032 Score=62.47 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCC-ccHHHHHHH-----------
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREER-PDVDKVYMT----------- 193 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~-pd~~~~y~~----------- 193 (840)
+.+....=+||-|.+.|++.||+.|+.+-- .=.++-+.+.++ |-.|-|++|.. .+.+ .||.
T Consensus 24 ~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP---~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~-~y~~~~~~~W~~iPf 99 (157)
T KOG2501|consen 24 EVLASEALQGKVVGLYFSAHWCPPCRDFTP---ILKDFYEELKDNAAPFEVVFVSSDRDEESLD-EYMLEHHGDWLAIPF 99 (157)
T ss_pred cchHhHhhCCcEEEEEEEEEECCchhhCCc---hHHHHHHHHHhcCCceEEEEEecCCCHHHHH-HHHHhcCCCeEEecC
Confidence 344454456899999999999999998742 344555556667 87777877643 2333 2322
Q ss_pred ------HHHHhcCCCCCCcEEEECCCCceecc
Q 003187 194 ------YVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 194 ------~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
-+...+++.|.|+.+++.|+|+.+..
T Consensus 100 ~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 100 GDDLIQKLSEKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred CCHHHHHHHHhcccCcCceeEEecCCCCEehH
Confidence 23344689999999999999998864
No 127
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.87 E-value=0.002 Score=65.76 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=42.4
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCc-----cH-HHHHHHHHHHhcCC--CCCCcEEEECC
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERP-----DV-DKVYMTYVQALYGG--GGWPLSVFLSP 212 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p-----d~-~~~y~~~~~~~~g~--~G~P~~vfl~p 212 (840)
+|.|+++||++|+... |.+.++-++ .|..+-|..++.+ -+ +.. ........|. .++|+++++|+
T Consensus 73 lV~FwaswCp~C~~e~------P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~ 145 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD------PVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAP-PDVMQTFFPNIPVATPTTFLVNV 145 (181)
T ss_pred EEEEECCCCHhHHHHH------HHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCc-hhHHHHHhCCCCCCCCeEEEEeC
Confidence 6679999999999964 455555444 4555555544332 11 100 0111222353 69999999999
Q ss_pred CCceec
Q 003187 213 DLKPLM 218 (840)
Q Consensus 213 ~g~~~~ 218 (840)
+|+..+
T Consensus 146 ~G~i~~ 151 (181)
T PRK13728 146 NTLEAL 151 (181)
T ss_pred CCcEEE
Confidence 999753
No 128
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=96.86 E-value=0.0037 Score=72.36 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=60.3
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCC---Cc
Q 003187 537 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG---FL 613 (840)
Q Consensus 537 tsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~---~l 613 (840)
|+-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++--. + .........+ -.
T Consensus 153 t~~~~~~AAalA~As~v~k~~--d~~~--------A~~~L~~A~~~~~~a~~~~~~-----~---~~~~~~~~~~~Y~~~ 214 (444)
T PF00759_consen 153 TDATAEFAAALAAASRVFKDF--DPAY--------AAQCLKAAKEAYAFAKKNPGV-----Y---SDNPQPNGGGFYNSS 214 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--THHH--------HHHHHHHHHHHHHHHHHSTTH-----G---GGTSTCTTTTTSHCS
T ss_pred hHHHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCCCc-----c---cCCcccccCCcccCC
Confidence 344588899999999999862 1112 257999999999999876411 1 0111010110 12
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003187 614 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 646 (840)
Q Consensus 614 eDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~ 646 (840)
...-.+++|.++||.+||+.+|++.|++....+
T Consensus 215 ~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 215 GYEDELAWAAAELYRATGDESYLDYAKEYYDDL 247 (444)
T ss_dssp -SHHHHHHHHHHHHHHHT-HHHHHHHHHHCCTS
T ss_pred CcccHHHHHHHHHHHhcCcHHHHHHHHHhHHhh
Confidence 233457889999999999999999998776443
No 129
>PLN02266 endoglucanase
Probab=96.86 E-value=0.047 Score=64.24 Aligned_cols=182 Identities=17% Similarity=0.122 Sum_probs=106.6
Q ss_pred cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHhccCCCCceEeec-cCCcc
Q 003187 356 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL--TKDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DADSA 432 (840)
Q Consensus 356 ~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~--tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~-DADs~ 432 (840)
.+-||+|- ..=.+-.---|-|.-.+|.+.|.+--.. .+-|.+++.++=.+||+++ |+.++|+||.-. |.+..
T Consensus 89 DlsGGwyD----AGD~~Kf~~p~a~s~t~L~w~~~ef~~~~~~~~pd~Ldelkw~~D~llk-~~~~~~~vy~qVg~~~~D 163 (510)
T PLN02266 89 DLVGGYYD----AGDNVKFGFPMAFTTTMLSWSVIEFGGLMKSELQNAKDAIRWATDYLLK-ATAHPDTIYVQVGDANKD 163 (510)
T ss_pred cCCCccee----CCCCceecchHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHH-hccCCCeEEEEeCCCCCC
Confidence 36677773 3333433344667777888887764332 3468899999999999997 777788888743 11110
Q ss_pred cccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHH
Q 003187 433 ETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNIL 512 (840)
Q Consensus 433 ~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l 512 (840)
+.+. +. |..++ ..+.+..+
T Consensus 164 ----------h~~W----------------~~---------Pe~~~----~~R~~y~i---------------------- 182 (510)
T PLN02266 164 ----------HACW----------------ER---------PEDMD----TPRSVFKV---------------------- 182 (510)
T ss_pred ----------cccC----------------CC---------hhhcC----CCCeeEEe----------------------
Confidence 0000 00 00000 00111100
Q ss_pred HHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 003187 513 GECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD 592 (840)
Q Consensus 513 ~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d 592 (840)
....|..| .-+-++.|||.|++++++. +..| ..++|+.|+++++|..++=
T Consensus 183 ------------~~~~pgsd------~a~e~AAALAaas~vfk~~--D~~y--------A~~~L~~Ak~ly~fa~~~~-- 232 (510)
T PLN02266 183 ------------DKNTPGSD------VAAETAAALAAASLVFRKS--DPTY--------SKLLVRRAIRVFQFADKYR-- 232 (510)
T ss_pred ------------CCCCCchH------HHHHHHHHHHHHHHHhccC--CHHH--------HHHHHHHHHHHHHHHHhCC--
Confidence 01123333 3478899999999999861 1112 2578999999999988642
Q ss_pred cCCCeEEEeecCCC-----CCC---CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003187 593 EQTHRLQHSFRNGP-----SKA---PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 643 (840)
Q Consensus 593 ~~~G~l~~~~~~g~-----~~~---~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~ 643 (840)
|.+ .++. +.. .++.| .+++|.++||.+|||..|++.++...
T Consensus 233 ---g~y----~~~~~~~~~~~y~s~s~~~D---El~WAAawLy~ATGd~~Yl~~~~~~~ 281 (510)
T PLN02266 233 ---GAY----SNGLKPDVCPFYCSYSGYQD---ELLWGAAWLHKATKNPTYLNYIQVNG 281 (510)
T ss_pred ---CCc----cCCCCcccCCCcccCCcchH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 111 1110 111 12223 55778899999999999999887654
No 130
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=96.84 E-value=0.027 Score=58.07 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEee
Q 003187 380 YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 426 (840)
Q Consensus 380 YDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa 426 (840)
..|++.+.++++||++|+|+.|+++|+++++..... ..+||+-..
T Consensus 30 maQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~--~~~GG~~~~ 74 (189)
T PF06662_consen 30 MAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVP--VEEGGVLAT 74 (189)
T ss_pred HHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcCh--HhhCCeeEE
Confidence 469999999999999999999999999999987653 346887653
No 131
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=96.76 E-value=0.0036 Score=66.70 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=18.9
Q ss_pred HHhcCCCEEEEEeccCChhhhh
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHV 155 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~ 155 (840)
+.-.||+|+|.|+++||++|..
T Consensus 95 sd~kGK~vvl~FwAswCp~c~~ 116 (236)
T PLN02399 95 SKFKGKVLLIVNVASKCGLTSS 116 (236)
T ss_pred HHhCCCeEEEEEEcCCCcchHH
Confidence 3345899999999999999975
No 132
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.71 E-value=0.76 Score=57.63 Aligned_cols=139 Identities=13% Similarity=0.078 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHH
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFL 619 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~ 619 (840)
++=++++|+.+++++++ ++|++.|.++.++...++.. +.+.+. ..++.....++....+=.
T Consensus 645 ~sGi~~aL~~l~~~~~d----------------~~~~~~a~~~l~~~~~~~~~-~~~~w~--~~~~~~~~~~WChG~~GI 705 (825)
T cd04792 645 ASGIAWALLRLYKVTGD----------------SRYLKLAHKALKYERRLFSE-EGWNWP--RKDGNSFSAAWCHGAPGI 705 (825)
T ss_pred HHHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHhcCH-hhcCCC--CcCcCCCCCcccCCcHHH
Confidence 33357899999999987 78999999999987665433 211111 111222234667777778
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHH
Q 003187 620 ISGLLDLYEF--GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 697 (840)
Q Consensus 620 i~aLl~LYea--Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~l 697 (840)
+.+++.++++ ..++.+.+.+..+.+.+..... .. +. ..--|++=.+..|+.++..
T Consensus 706 ~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~--------~~---~~------------slCHG~~Gil~~ll~~~~~ 762 (825)
T cd04792 706 LLARLELLKFNDLDDEELKEEIEIALKTTLKEGF--------GN---NH------------SLCHGDLGNLEILLYAAKA 762 (825)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHhcC--------CC---CC------------eecCCCcchHHHHHHHHHh
Confidence 8899999999 6788888888877766654321 00 00 1112333345678888999
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHHHh
Q 003187 698 VAGSKSDYYRQNAEHSLAVFETRLKD 723 (840)
Q Consensus 698 t~~~~~~~y~~~A~~~l~~~~~~i~~ 723 (840)
+++ ++|.+.++.+...+.....+
T Consensus 763 ~~~---~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 763 FGD---EKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred cCC---HHHHHHHHHHHHHHHHHHHh
Confidence 885 67888888877766555543
No 133
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0022 Score=74.31 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=71.2
Q ss_pred cccccCCChhhhcccCCCccCccc------hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--Ce
Q 003187 103 NRLAAEHSPYLLQHAHNPVDWFAW------GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WF 174 (840)
Q Consensus 103 NrL~~e~SpYL~~ha~~~v~W~~~------~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~F 174 (840)
..|...-+|||.- ..-|=+|..- +..--..+..++|-|||.|||+||+.|+.++. .=.++++.+.. +-
T Consensus 344 ~~l~Gk~~p~~kS-qpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP---~~eeLAe~~~~~~~v 419 (493)
T KOG0190|consen 344 DFLDGKVKPHLKS-QPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAP---IYEELAEKYKDDENV 419 (493)
T ss_pred HHhcCcccccccc-CCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhh---HHHHHHHHhcCCCCc
Confidence 4567777888875 3334456411 23345568899999999999999999999986 33566776664 68
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC--cee
Q 003187 175 VSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL--KPL 217 (840)
Q Consensus 175 V~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g--~~~ 217 (840)
|..|+|.+.+.--.- .+.|+||+.|.-..+ +|+
T Consensus 420 viAKmDaTaNd~~~~----------~~~~fPTI~~~pag~k~~pv 454 (493)
T KOG0190|consen 420 VIAKMDATANDVPSL----------KVDGFPTILFFPAGHKSNPV 454 (493)
T ss_pred EEEEeccccccCccc----------cccccceEEEecCCCCCCCc
Confidence 999999985422111 356899999998776 454
No 134
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.70 E-value=0.16 Score=60.13 Aligned_cols=290 Identities=17% Similarity=0.151 Sum_probs=157.5
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHH
Q 003187 369 RWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVE 448 (840)
Q Consensus 369 ~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~ 448 (840)
+-.|+-||-.+. .|..++-||.+++|+.|++.|.+..+-|+.-+..|.|-=|+..+-.... .+.+
T Consensus 148 ~~~vsvFEttIR----~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~-----~~~~------ 212 (522)
T PTZ00470 148 GLGVSVFETTIR----VLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGR-----KSYP------ 212 (522)
T ss_pred CCeeeeeeeehh----hHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCC-----CCCc------
Confidence 345677886665 8888899999999999999999999999987766666433333221100 0000
Q ss_pred HhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccC-CcceeeccCCc-hHHHHhcCCC-HHHHHHHHHHHHHHHHhhhcC
Q 003187 449 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFK-GKNVLIELNDS-SASASKLGMP-LEKYLNILGECRRKLFDVRSK 525 (840)
Q Consensus 449 ~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~e-g~nvL~~~~~~-~~~a~~~g~~-~e~l~~~l~~~r~kL~~~R~~ 525 (840)
.+. +...+.-..+. -|+...-.++ ..+..+..+.+.+.|.+.|..
T Consensus 213 --------------------------------~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~~~~ 260 (522)
T PTZ00470 213 --------------------------------GWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPA 260 (522)
T ss_pred --------------------------------ccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCC
Confidence 000 00111111110 0111111111 244556667777777664432
Q ss_pred CCCCCCcchhhh-----------cHHHHH---HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 003187 526 RPRPHLDDKVIV-----------SWNGLV---ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 591 (840)
Q Consensus 526 R~~P~~DdKilt-----------sWNal~---I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~ 591 (840)
. |.+=...|- +|-|.. -.=|.+.+..++. ..+.|.++-.++++-+++|+.
T Consensus 261 ~--~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~--------------~d~~~~~~~~~a~~~i~~~l~ 324 (522)
T PTZ00470 261 I--NGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNG--------------REERYRRLFVESAKGIIEHLY 324 (522)
T ss_pred C--CCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCC--------------CcHHHHHHHHHHHHHHHHHhc
Confidence 1 221111111 111211 1135555666642 126788888888888888875
Q ss_pred cc-CCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHcccccCCc----cc
Q 003187 592 DE-QTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEF-------GSGTKWLVWAIELQNTQDELFLDREGGG----YF 659 (840)
Q Consensus 592 d~-~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYea-------Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg----yf 659 (840)
.. .+|-++-.-.+|.. .....+--+.++-|++.|... ..+.+|++.|++|.+.+...+....+|- |.
T Consensus 325 ~~s~~~~~~v~~~~~~~-~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~~~tGl~PE~~~ 403 (522)
T PTZ00470 325 KRSPKGLTYIAEMDGGS-LTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLGPEIFH 403 (522)
T ss_pred ccCCCCcEEEeeccCCc-CcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhcccCCCCceEE
Confidence 42 12323222222211 122233335667788877642 2357899999999999988775444442 22
Q ss_pred cCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 003187 660 NTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLM 731 (840)
Q Consensus 660 ~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~~ 731 (840)
..... ... . ....|...+= --..++.+.-|+++||+ +.|++.+.++.+++.... +.+.|++.+
T Consensus 404 ~~~~~-~~~--~-~~~~d~~Y~L-RPE~iES~fylyR~TgD---~~yre~gW~~f~ai~k~~-rt~~Gya~i 466 (522)
T PTZ00470 404 FDPNS-GDI--S-PNVHDSHYIL-RPETVESIFILYRLTGD---PKYREWAWKIFQAIEKHC-KTENGYSGL 466 (522)
T ss_pred eccCc-ccc--c-cccCCCCCCC-ChhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh-cCCcccccc
Confidence 21110 000 0 0001111110 12688899999999996 899999999999987655 456666553
No 135
>PLN02171 endoglucanase
Probab=96.70 E-value=0.066 Score=64.54 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc--ccc---CCCeEEEeecCCCCCCCCCc
Q 003187 539 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL--YDE---QTHRLQHSFRNGPSKAPGFL 613 (840)
Q Consensus 539 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l--~d~---~~G~l~~~~~~g~~~~~~~l 613 (840)
--+-+..|||.|++++++. +..| ..++|+.|+++++|..++- ++. ...++|.+ ..++.
T Consensus 177 ~a~e~AAAlAaaS~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s-------~s~y~ 239 (629)
T PLN02171 177 LAGETAAAMAAASIVFRRS--NPGY--------ANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRS-------VSGYG 239 (629)
T ss_pred HHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCC-------CCCcc
Confidence 3477889999999999761 1112 1568999999999998752 110 00112110 11232
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003187 614 DDYAFLISGLLDLYEFGSGTKWLVWAIELQN 644 (840)
Q Consensus 614 eDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~ 644 (840)
=.+++|..+||.+|||..||+.+....+
T Consensus 240 ---DEl~WAAawLy~ATgd~~Yl~~~~~~~~ 267 (629)
T PLN02171 240 ---DELLWAAAWLYQATNNQYYLDYLGNNGD 267 (629)
T ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3568899999999999999998876554
No 136
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.66 E-value=0.007 Score=58.09 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=49.1
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHH--------------HHHhcC
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY--------------VQALYG 200 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~~--------------~~~~~g 200 (840)
.||+++|.|+ +.||++|..+-. .++ ++.+.+. +++..|-|..+. ++..+.|.+. .....|
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~-~l~--~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 97 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEAC-DFR--DLYEEFKALGAVVIGVSPDS-VESHAKFAEKYGLPFPLLSDPDGKLAKAYG 97 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHH-HHH--HHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHhCCCceEEECCccHHHHHhC
Confidence 4899999998 589999997644 232 2333333 344444444432 2222223211 111235
Q ss_pred CCCC---------CcEEEECCCCceeccc-cccCC
Q 003187 201 GGGW---------PLSVFLSPDLKPLMGG-TYFPP 225 (840)
Q Consensus 201 ~~G~---------P~~vfl~p~g~~~~~~-tY~p~ 225 (840)
+..+ |+++++|++|++.+.- ++.+.
T Consensus 98 v~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~ 132 (140)
T cd03017 98 VWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPK 132 (140)
T ss_pred CccccccccCCcceeEEEECCCCEEEEEEecCCcc
Confidence 5555 8999999999988763 34443
No 137
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0025 Score=73.91 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~ 204 (840)
.+-|+..-..+.-|||.|||+||..|+.+.. +=.+-|..|.+ .--..|||.++..++...| ++.|+
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaP---ey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y--------~v~gy 100 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAP---EYEKAATELKEEGSPVKLAKVDATEESDLASKY--------EVRGY 100 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCc---HHHHHHHHhhccCCCceeEEeecchhhhhHhhh--------cCCCC
Confidence 3456777788999999999999999999986 33455566665 4567799999888888777 89999
Q ss_pred CcEEEECC
Q 003187 205 PLSVFLSP 212 (840)
Q Consensus 205 P~~vfl~p 212 (840)
||.-|.--
T Consensus 101 PTlkiFrn 108 (493)
T KOG0190|consen 101 PTLKIFRN 108 (493)
T ss_pred CeEEEEec
Confidence 99876543
No 138
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.65 E-value=0.0029 Score=65.33 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=46.8
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
+++|+|+|+++||..|+.|.. .| .++++... ....+|||++.- ...| ++.+.||++|+- +|+.+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~-~l--~~LA~k~~-~vkFvkI~ad~~---~~~~--------~i~~lPTlliyk-~G~~v 165 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQ-HL--SELARKFP-DTKFVKIISTQC---IPNY--------PDKNLPTILVYR-NGDIV 165 (192)
T ss_pred CCEEEEEEECCCCchHHHHHH-HH--HHHHHHCC-CCEEEEEEhHHh---HhhC--------CCCCCCEEEEEE-CCEEE
Confidence 469999999999999999976 33 34444432 456678887632 1223 888999888875 67776
Q ss_pred cc
Q 003187 218 MG 219 (840)
Q Consensus 218 ~~ 219 (840)
..
T Consensus 166 ~~ 167 (192)
T cd02988 166 KQ 167 (192)
T ss_pred EE
Confidence 54
No 139
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.63 E-value=0.0019 Score=69.27 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=60.7
Q ss_pred cchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEE---cCCCCccHHHHHHHHHHHhcCC
Q 003187 125 AWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREERPDVDKVYMTYVQALYGG 201 (840)
Q Consensus 125 ~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkv---D~ee~pd~~~~y~~~~~~~~g~ 201 (840)
.+.++-|..-|.++ .-||+||++||..|++++. ++ .+|.--|..-=.|||| |.+.-|.+...+ |+
T Consensus 31 eDLddkFkdnkddd-iW~VdFYAPWC~HCKkLeP-iW--deVG~elkdig~PikVGKlDaT~f~aiAnef--------gi 98 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDD-IWFVDFYAPWCAHCKKLEP-IW--DEVGHELKDIGLPIKVGKLDATRFPAIANEF--------GI 98 (468)
T ss_pred hhhhHHhhhcccCC-eEEEEeechhhhhcccccc-hh--HHhCcchhhcCCceeecccccccchhhHhhh--------cc
Confidence 34466666665544 4789999999999999986 33 3555566665667775 888889988877 99
Q ss_pred CCCCcEEEECCCCceec
Q 003187 202 GGWPLSVFLSPDLKPLM 218 (840)
Q Consensus 202 ~G~P~~vfl~p~g~~~~ 218 (840)
.|+||+.|+..+.-.=|
T Consensus 99 qGYPTIk~~kgd~a~dY 115 (468)
T KOG4277|consen 99 QGYPTIKFFKGDHAIDY 115 (468)
T ss_pred CCCceEEEecCCeeeec
Confidence 99999999987644333
No 140
>PLN02345 endoglucanase
Probab=96.63 E-value=0.068 Score=62.41 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC--CCCCCcchHH
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYA 617 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~--~~~~~leDyA 617 (840)
-+-+..|||.|++++++. +..| ..++|+.|+++.+|..++- |.+..+..++.. ...++-|
T Consensus 144 a~~~AAAlA~as~vfk~~--D~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~Y~s~~~~D--- 205 (469)
T PLN02345 144 AAETAAAMAAASLVFKSS--DSTY--------SDTLLKHAKQLFNFADKYR-----GSYSESIPEVQDYYNSTGYGD--- 205 (469)
T ss_pred HHHHHHHHHHHHHHhccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CcccCCCCccCCCCCCccccc---
Confidence 377889999999999862 1112 1568999999999998752 111111000000 1122333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 003187 618 FLISGLLDLYEFGSGTKWLVWAI 640 (840)
Q Consensus 618 ~~i~aLl~LYeaTgd~~yL~~A~ 640 (840)
.+++|.++||.+|||..|++.+.
T Consensus 206 El~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 206 ELLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 46889999999999999999875
No 141
>PLN02308 endoglucanase
Probab=96.61 E-value=0.11 Score=61.13 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC-CCCCC---CCCcch
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKA---PGFLDD 615 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~-g~~~~---~~~leD 615 (840)
-+.++.|||.|++++++. +..| ..++|+.|+++++|..++- |.+...... +.+.. .++.
T Consensus 174 a~~~AAAlA~as~vf~~~--D~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~~Y~~~s~~~-- 236 (492)
T PLN02308 174 AGETAAALAAASIVFRKR--DPAY--------SRLLLDRAVRVFAFADKYR-----GAYSSSLHAAVCPFYCDFNGYQ-- 236 (492)
T ss_pred HHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CcccCCCCcccCCCcCCCCccc--
Confidence 388899999999999751 1122 1578999999999998752 221100000 00000 1222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003187 616 YAFLISGLLDLYEFGSGTKWLVWAIEL 642 (840)
Q Consensus 616 yA~~i~aLl~LYeaTgd~~yL~~A~~L 642 (840)
=.+++|..+||.+|||..|++.+...
T Consensus 237 -DEl~WAAawLy~ATgd~~Yl~~~~~~ 262 (492)
T PLN02308 237 -DELLWGAAWLHKASRRREYREYIVKN 262 (492)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35688999999999999999987654
No 142
>PLN02340 endoglucanase
Probab=96.61 E-value=0.052 Score=65.24 Aligned_cols=188 Identities=18% Similarity=0.139 Sum_probs=110.6
Q ss_pred cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH---HHcc-CChHHHHHHHHHHHHHHHhccCCCCceEeec-cCC
Q 003187 356 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDA---FSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 430 (840)
Q Consensus 356 ~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~A---y~~t-gd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~-DAD 430 (840)
.+-||+| |..=++-.---|-|.=+.|+|.|.+. +... +-|..++.++=.+||+++ |..+++.||.-. |.+
T Consensus 73 DlsGGwy----DAGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk-~~~~~~~~~~qVGdg~ 147 (614)
T PLN02340 73 DLVGGYY----DAGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIK-AHTQPNVLWGQVGDGD 147 (614)
T ss_pred CCCCCce----eCCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHH-hcCCCCeEEEEeCCCC
Confidence 3678888 34444555555889999999998874 4332 358889999999999998 766667777533 222
Q ss_pred cccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHH
Q 003187 431 SAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLN 510 (840)
Q Consensus 431 s~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~ 510 (840)
.. |.-| ++ ||+.
T Consensus 148 ~D----------------------------------------------H~~W-~~-------------------PE~~-- 159 (614)
T PLN02340 148 SD----------------------------------------------HYCW-ER-------------------AEDM-- 159 (614)
T ss_pred cc----------------------------------------------cccC-CC-------------------hhhc--
Confidence 10 1111 00 0000
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcc-hhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Q 003187 511 ILGECRRKLFDVRSKRPRPHLDD-KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH 589 (840)
Q Consensus 511 ~l~~~r~kL~~~R~~R~~P~~Dd-KiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~ 589 (840)
...|+--.+|. .--|+--+-+..|||.|++++++. +..| ..++|+.|+++++|..++
T Consensus 160 ------------~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~ 217 (614)
T PLN02340 160 ------------TTPRTAYKLDQNHPGSDLAGETAAALAAASKAFKPY--NSSY--------SDLLLVHAKQLFSFADKF 217 (614)
T ss_pred ------------CCcCceeecCCCCCccHHHHHHHHHHHHHHHhccCC--CHHH--------HHHHHHHHHHHHHHHHhC
Confidence 00111111111 011333488899999999999751 1122 256899999999999874
Q ss_pred ccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003187 590 LYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQN 644 (840)
Q Consensus 590 l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~ 644 (840)
- |.+.-+...+.....- ....=.+++|.++||.+|||..|++.+.....
T Consensus 218 ~-----g~y~~s~~~a~~~Y~s-s~~~DEl~WAAawLy~ATgd~~Yl~~~~~~~~ 266 (614)
T PLN02340 218 R-----GLYDDSIQNAKKFYTS-SGYSDELLWAAAWLYRATGDEYYLKYVVDNAV 266 (614)
T ss_pred C-----CCccCCCCccccCCCC-CCcchHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 2111000111110100 12223568899999999999999999887654
No 143
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0034 Score=71.42 Aligned_cols=74 Identities=26% Similarity=0.371 Sum_probs=60.9
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003187 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~ 211 (840)
......+++.+|.|+++||..|+.+.. +++ +++..+...-....||.++.+++-+.| ++.|+|+.+++.
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~-~~~--~~~~~l~~~~~~~~vd~~~~~~~~~~y--------~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAP-TYK--KLAKALKGKVKIGAVDCDEHKDLCEKY--------GIQGFPTLKVFR 109 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhch-HHH--HHHHHhcCceEEEEeCchhhHHHHHhc--------CCccCcEEEEEc
Confidence 345577999999999999999999986 444 788888765556679999988888777 899999999999
Q ss_pred CCCce
Q 003187 212 PDLKP 216 (840)
Q Consensus 212 p~g~~ 216 (840)
++.++
T Consensus 110 ~~~~~ 114 (383)
T KOG0191|consen 110 PGKKP 114 (383)
T ss_pred CCCce
Confidence 98333
No 144
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.092 Score=60.49 Aligned_cols=124 Identities=20% Similarity=0.207 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 620 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 620 (840)
+-+|.|+..+++++|. ...|+.+.+++++|...+- +..+.. ....++ -.+-
T Consensus 134 ghLieg~va~~qaTGk----------------r~lldV~~rlADhi~tvfg-p~~~q~--------~g~~gH----~eie 184 (589)
T COG3533 134 GHLIEGGVAAHQATGK----------------RRLLDVVCRLADHIATVFG-PEEDQV--------PGYCGH----PEIE 184 (589)
T ss_pred HHHHhhhhHHHHhhCc----------------chHHHHHHHHHHhhhhhcC-cccccc--------ccccCC----Cchh
Confidence 6678899999999997 6899999999999987763 332211 111222 3356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHH----HHHHHHHHHH
Q 003187 621 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV----SVINLVRLAS 696 (840)
Q Consensus 621 ~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~----~a~~LlrL~~ 696 (840)
.||.+||++||+++||+.|+-.. +..+-.-+. -|..+. + .+.++ ....+.+|+.
T Consensus 185 lAl~~Ly~~Tg~~rYL~LA~~Fi--------~~rg~~P~~---------~rg~e~-~----~gHAvr~iyl~~G~A~l~~ 242 (589)
T COG3533 185 LALAELYRLTGDQRYLDLARRFI--------HQRGVEPLA---------QRGDEL-E----GGHAVRQIYLYIGAADLAE 242 (589)
T ss_pred HHHHHHHHHhcChHHHHHHHHHH--------HHhccChhh---------cCchhh-h----hhhHHHHHHHhhhHHHHHH
Confidence 79999999999999999997544 322211110 011111 1 23333 3344668999
Q ss_pred HhCCCCchHHHHHHHHHHHHHH
Q 003187 697 IVAGSKSDYYRQNAEHSLAVFE 718 (840)
Q Consensus 697 lt~~~~~~~y~~~A~~~l~~~~ 718 (840)
++|+ +.++..++.+.+.+.
T Consensus 243 ~~gD---ds~r~~~~~lW~~~t 261 (589)
T COG3533 243 ETGD---DSLRQAAEFLWQNVT 261 (589)
T ss_pred HhCC---HHHHHHHHHHHHHhh
Confidence 9986 678888887777654
No 145
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.57 E-value=0.0066 Score=63.01 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=17.7
Q ss_pred cCCCEEEEEeccCChhhhh
Q 003187 137 RDVPIFLSIGYSTCHWCHV 155 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~ 155 (840)
.||+|+|.|+++||++|..
T Consensus 38 kGkvvlv~fwAswC~~C~~ 56 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKK 56 (199)
T ss_pred CCCEEEEEEECCCCCChHH
Confidence 5899999999999999985
No 146
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.56 E-value=0.011 Score=58.13 Aligned_cols=84 Identities=11% Similarity=0.120 Sum_probs=46.8
Q ss_pred cCCCEEEEEecc-CChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH---------------HHHHhc
Q 003187 137 RDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT---------------YVQALY 199 (840)
Q Consensus 137 e~KpI~l~~g~~-wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~---------------~~~~~~ 199 (840)
.+|+++|.|++. ||.+|...-. .+ .++.+.++ +++..|-|..+...++ +.|.+ ..+. .
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~-~l--~~~~~~~~~~~v~vi~Is~d~~~~~-~~~~~~~~~~~~~l~D~~~~~~~~-~ 103 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQAC-GL--RDNMDELKKAGVVVLGISTDKPEKL-SRFAEKELLNFTLLSDEDHQVAEQ-F 103 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHhCCCCeEEECCCchHHHH-h
Confidence 579999999975 7889987533 22 22333343 3455555555432222 22321 1111 2
Q ss_pred CCCC------------CCcEEEECCCCceeccc-cccCC
Q 003187 200 GGGG------------WPLSVFLSPDLKPLMGG-TYFPP 225 (840)
Q Consensus 200 g~~G------------~P~~vfl~p~g~~~~~~-tY~p~ 225 (840)
|+.+ .|+++++|++|++...- +|.|+
T Consensus 104 gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~ 142 (154)
T PRK09437 104 GVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS 142 (154)
T ss_pred CCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence 3322 27889999999987663 34443
No 147
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=96.54 E-value=0.14 Score=57.11 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=70.7
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCC---cc--------
Q 003187 287 LCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HD-------- 355 (840)
Q Consensus 287 ~~~~~l~~~~D~~~GGfg~aPKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi---~D-------- 355 (840)
++++.|.+.-.+ .|||+..+ +....-.+.+......+. . ++..+.+.+.++-|..-.+ -+
T Consensus 3 ~~~~~L~~~Q~~-dG~W~~~~--~~~~~Ta~~~~al~~~g~---~---~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~ 73 (348)
T cd02889 3 RALDFLLSLQAP-DGHWPGEY--SQVWDTALALQALLEAGL---A---PEFDPALKKALEWLLKSQIRDNPDDWKVKYRH 73 (348)
T ss_pred hHHHHHHHhccC-CCCccccC--CchHHHHHHHHHHHHcCC---C---CccCHHHHHHHHHHHhcCCCCCCCchhhcCCC
Confidence 445566655555 69998876 332222333333322211 0 1233444455555544332 11
Q ss_pred cCCCeEEEEecCCC-CCCCCCcchHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceEe
Q 003187 356 HVGGGFHRYSVDER-WHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 356 ~v~GGF~RYsvD~~-W~vPHFEKMLYDNA~Ll~~ya~Ay~~tg--d~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
.-.||+- |+.... |.. ..+.|..+.++..+....+ ++.+.+.++++++||.+ .+.++|||..
T Consensus 74 ~~~Ggw~-y~~~~~~~~~------~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q~~dG~f~~ 138 (348)
T cd02889 74 LRKGGWA-FSTANQGYPD------SDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLS-MQNSNGGFAA 138 (348)
T ss_pred CCCCcCc-ccCcCCCCCC------CCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHH-hccCCCCEee
Confidence 3344443 554322 221 2378999999998888763 57789999999999997 4778999864
No 148
>PLN00119 endoglucanase
Probab=96.52 E-value=0.1 Score=61.13 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-cCCCCCCCCCcchHHH
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAF 618 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~-~~g~~~~~~~leDyA~ 618 (840)
-+-+..|||.+++++++. +..| ..++|+.|+++++|..++- | .+... .++...... ...+-.
T Consensus 179 a~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~fA~~~~-----g-~y~~~~~~~~g~Y~s-s~~~DE 241 (489)
T PLN00119 179 AGETAAAMAAASIAFAPS--DPAY--------ASILIGHAKDLFEFAKAHP-----G-LYQNSIPNAGGFYAS-SGYEDE 241 (489)
T ss_pred HHHHHHHHHHHHHHcccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----C-cccCCCCCCCCCCCC-CchhhH
Confidence 378899999999999851 1112 2568999999999998741 2 11110 011111001 123346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 003187 619 LISGLLDLYEFGSGTKWLVWAIE 641 (840)
Q Consensus 619 ~i~aLl~LYeaTgd~~yL~~A~~ 641 (840)
+++|.++||.+|||..|++.+..
T Consensus 242 l~WAAawLY~aTgd~~Yl~~~~~ 264 (489)
T PLN00119 242 LLWAAAWLHRATNDQTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHh
Confidence 88999999999999999987653
No 149
>PLN02420 endoglucanase
Probab=96.51 E-value=0.13 Score=60.95 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHH
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFL 619 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~ 619 (840)
-+-+..|||.|++++++. +..| ..++|+.|+++++|..++- |.+-.....+.+........+-.+
T Consensus 189 aa~~AAALA~AS~vfk~~--D~~Y--------A~~~L~~Ak~ly~fA~~~~-----g~y~~~~~~~~g~Y~s~s~y~DEl 253 (525)
T PLN02420 189 AGETAAAMAAASIVFRST--NPHY--------SHLLLHHAQQLFEFGDKYR-----GKYDESLKVVKSYYASVSGYMDEL 253 (525)
T ss_pred HHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhcC-----CccCCCCcccCCCCCCcCcccHHH
Confidence 377899999999999862 1112 1568999999999988531 211000000011111111234577
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 003187 620 ISGLLDLYEFGSGTKWLVWAIELQ 643 (840)
Q Consensus 620 i~aLl~LYeaTgd~~yL~~A~~L~ 643 (840)
++|.++||.+|||..|++.+.+..
T Consensus 254 ~WAAawLY~ATgd~~Yl~~a~~~~ 277 (525)
T PLN02420 254 LWGATWLYRATDNEHYMSYVVDMA 277 (525)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999887544
No 150
>PLN03009 cellulase
Probab=96.49 E-value=0.079 Score=62.37 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCC-Ccc---hH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG-FLD---DY 616 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~-~le---Dy 616 (840)
+-+..|||.|++++++. +..| ..++|+.|+++++|..++- |.+ ....+......+ +.+ ..
T Consensus 176 ~~~AAalA~as~vfk~~--D~~Y--------A~~ll~~Ak~ly~~a~~~~-----g~y-~~~~~~~~g~~~~Y~~~s~~~ 239 (495)
T PLN03009 176 GETAAALAASSMAFRSS--DPGY--------SETLLRNAIKTFQFADMYR-----GAY-SDNDDIKDGVCPFYCDFDGYQ 239 (495)
T ss_pred HHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CCc-cCCccccCccccCcCCccccc
Confidence 78899999999999851 1112 1467999999999998641 222 111000001111 111 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003187 617 AFLISGLLDLYEFGSGTKWLVWAIEL 642 (840)
Q Consensus 617 A~~i~aLl~LYeaTgd~~yL~~A~~L 642 (840)
=.+++|.++||.+|||..|++.+...
T Consensus 240 DE~~WAAawLy~aTgd~~Yl~~~~~~ 265 (495)
T PLN03009 240 DELLWGAAWLRRASGDDSYLNYIENN 265 (495)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 45678999999999999999988653
No 151
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.46 E-value=1.8 Score=47.40 Aligned_cols=133 Identities=12% Similarity=-0.010 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe--ecCCCCCCCCCcchHHHHH
Q 003187 543 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPGFLDDYAFLI 620 (840)
Q Consensus 543 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~--~~~g~~~~~~~leDyA~~i 620 (840)
++.+|+.+++.+.+ +.+.+.++.+..++.+...+ . ++.++. ..++.....++...-+=.+
T Consensus 164 i~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~wChG~~Gi~ 225 (343)
T cd04434 164 ILLALLLLYKKTVD----------------KSLEALIKALLKYERRLQDD-S-GGFWWPSRSNGGNRFLVAWCHGAPGIL 225 (343)
T ss_pred HHHHHHHHHHhcCC----------------hhHHHHHHHHHHHHHHccCC-C-CCCCCCCCCCCCccccceecCCChhHH
Confidence 47788899988754 56777777777766555433 2 333221 1112223345666667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003187 621 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 700 (840)
Q Consensus 621 ~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~ 700 (840)
.+++.++++++++.+++.+++..+.+.+..... ..+...=.|.+=.+..|++++..+++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~lChG~~G~~~~ll~l~~~~~~ 284 (343)
T cd04434 226 LALLLAYKALGDDKYDEAAEKALELAWKRGLLE---------------------LKNPGLCHGIAGNLLILLLLYKLTGD 284 (343)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc---------------------CCCCCcCcCccchHHHHHHHHHHhCC
Confidence 999999999999999999999888776554311 00112223455566788889999986
Q ss_pred CCchHHHHHHHHHHHHH
Q 003187 701 SKSDYYRQNAEHSLAVF 717 (840)
Q Consensus 701 ~~~~~y~~~A~~~l~~~ 717 (840)
+.+++.++.+....
T Consensus 285 ---~~~~~~a~~~~~~~ 298 (343)
T cd04434 285 ---LKFLARALALALLL 298 (343)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 67888887665543
No 152
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.39 E-value=0.0051 Score=53.66 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=40.9
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+.|+++||++|+.+.+ .++.-. ++..|..+.||.++.+... .+++...+|..++|+.+ + +|+.+.+
T Consensus 2 ~~f~~~~Cp~C~~~~~-~L~~~~----i~~~~~~~~v~~~~~~~~~---~~~l~~~~g~~~vP~v~-i--~g~~igg 67 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKE-ILAKLN----VKPAYEVVELDQLSNGSEI---QDYLEEITGQRTVPNIF-I--NGKFIGG 67 (84)
T ss_pred EEEECCCChhHHHHHH-HHHHcC----CCCCCEEEEeeCCCChHHH---HHHHHHHhCCCCCCeEE-E--CCEEEcC
Confidence 5689999999999864 332221 2223778888876543322 22234456888999975 3 4566544
No 153
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.32 E-value=0.26 Score=60.28 Aligned_cols=224 Identities=20% Similarity=0.179 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCeEEEEec----C-CCCCCCCCcchHHH-HHHHHHHHHHHHHccCChHHHHHHHH
Q 003187 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV----D-ERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRD 407 (840)
Q Consensus 334 ~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsv----D-~~W~vPHFEKMLYD-NA~Ll~~ya~Ay~~tgd~~y~~~A~~ 407 (840)
++....+|..--+.|...+|+-...+-..+..+ + ..|.+--.---||| -|-++-.|+-..++||+..|+++|.+
T Consensus 595 ~e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~ 674 (963)
T COG4403 595 NEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIK 674 (963)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHH
Confidence 445666777777777777777665554444322 3 66876445567888 78888888888999999999999999
Q ss_pred HHHHHHHhccCCC-----CceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCcc
Q 003187 408 ILDYLRRDMIGPG-----GEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEF 482 (840)
Q Consensus 408 t~~fl~r~m~~~~-----Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~ 482 (840)
++.=+.+.+.... |||. |--|-||.-..++ .+
T Consensus 675 ~L~~~~~sv~~~~~~~~iga~~---------------G~~g~~yal~~I~----------~~------------------ 711 (963)
T COG4403 675 ALQDSRKSVNNNLNPINIGAFT---------------GLSGYFYALWKIY----------SV------------------ 711 (963)
T ss_pred HHHHHHHhhhhccCCccccccc---------------ccchhhhhhHHHH----------Hh------------------
Confidence 9988888765422 3332 3345566411110 00
Q ss_pred CCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHH--HHHHHHHHHHhhhhhhh
Q 003187 483 KGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFARASKILKSEAES 560 (840)
Q Consensus 483 eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~--I~ALa~A~~~~~d~~~~ 560 (840)
.+.+.|. .+..+.+. ..+.+.+.- .. | | --||++ |..|...|+.+.+
T Consensus 712 ~~~~~l~----------------~~~~~~i~-~le~~v~~~--~~-~--d-----~i~Gl~g~i~~L~~iYk~~~e---- 760 (963)
T COG4403 712 TRDNYLI----------------QSAENSIR-HLEILVQKS--KD-P--D-----FINGLAGVICVLVSIYKLTDE---- 760 (963)
T ss_pred cccHHHH----------------HHHHHHHH-HHHHHHhhc--cC-c--c-----hhhccHHHHHHHHHHHhhccc----
Confidence 0011110 01111111 112222211 11 1 1 124554 7788889998765
Q ss_pred hcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 003187 561 AMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAI 640 (840)
Q Consensus 561 ~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~ 640 (840)
|+.++.|..+.+.+.+.....++ .+....++...-+-.|.+|+.+|++|+++.+++.+.
T Consensus 761 ------------pk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~ 819 (963)
T COG4403 761 ------------PKFLELAISLGRILMEKIVGNDS---------SETVLLGFSHGASGIILTLLKLYEATGEESLLKKIK 819 (963)
T ss_pred ------------hHHHHHHHHHHHHHHHHhhcccc---------ccceecccccchHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 89999999999999876543221 112345677788899999999999999999999999
Q ss_pred HHHHHHHHHccc
Q 003187 641 ELQNTQDELFLD 652 (840)
Q Consensus 641 ~L~~~~~~~F~D 652 (840)
++...-..+|-+
T Consensus 820 e~~~~Er~~f~~ 831 (963)
T COG4403 820 ELLSYERMKFSD 831 (963)
T ss_pred HHHHHHHHHHHH
Confidence 999887777765
No 154
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=96.29 E-value=0.017 Score=62.87 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHH
Q 003187 543 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 622 (840)
Q Consensus 543 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~a 622 (840)
+|..|++||+++++ ++|++.|.++++-+++.-.-..+-++-| |.+ | + .++
T Consensus 285 v~~~L~kAy~VF~E----------------ekyl~aa~ecadvVW~rGlLkkg~Gich----Gva---G--N-----aYv 334 (403)
T KOG2787|consen 285 VAYTLAKAYQVFKE----------------EKYLEAAMECADVVWKRGLLKKGVGICH----GVA---G--N-----AYV 334 (403)
T ss_pred HHHHHHHHHHHhhH----------------HHHHHHHHHHHHHHHHhhhhhcCCcccc----ccc---C--c-----hhh
Confidence 57889999999997 7999999999999886422211112222 221 1 2 336
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003187 623 LLDLYEFGSGTKWLVWAIELQNTQDEL 649 (840)
Q Consensus 623 Ll~LYeaTgd~~yL~~A~~L~~~~~~~ 649 (840)
+|.||++|+|.+||.+|.+.++.+.+.
T Consensus 335 FLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 335 FLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred hHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999998764
No 155
>PLN02909 Endoglucanase
Probab=96.27 E-value=0.2 Score=58.78 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCC---CCCCcchH
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK---APGFLDDY 616 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~---~~~~leDy 616 (840)
-+-+..|||.|++++++. +..| ..++|+.|+++++|..++= |.+ . +..+. ..++.|
T Consensus 182 a~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~fA~~~~-----g~y-~---~~~~~y~s~s~y~D-- 240 (486)
T PLN02909 182 AAETAAAMAASSMVFRHV--DHKY--------SRRLLNKAKLLFKFAKAHK-----GTY-D---GECPFYCSYSGYND-- 240 (486)
T ss_pred HHHHHHHHHHHHHhhccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCc-C---CCCCccccCCCcch--
Confidence 488899999999999862 1112 1568999999999998752 111 0 11111 122333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003187 617 AFLISGLLDLYEFGSGTKWLVWAIE 641 (840)
Q Consensus 617 A~~i~aLl~LYeaTgd~~yL~~A~~ 641 (840)
.+++|..+||.+|||..|++.+..
T Consensus 241 -El~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 241 -ELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHh
Confidence 568899999999999999997764
No 156
>PLN02613 endoglucanase
Probab=96.24 E-value=0.2 Score=58.93 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCC---CCCCcc
Q 003187 538 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK---APGFLD 614 (840)
Q Consensus 538 sWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~---~~~~le 614 (840)
+.-+-+..|||.|++++++. +..| ..++|+.|+++++|..++- |.+. +..+. ..++.|
T Consensus 172 d~a~~~AAALAaas~vfk~~--D~~y--------A~~~L~~Ak~ly~~a~~~~-----g~y~----~~~~~y~s~s~~~D 232 (498)
T PLN02613 172 EAAGEAAAALAAASLVFKDV--DSSY--------SSKLLNHARSLFEFADKYR-----GSYQ----ASCPFYCSYSGYQD 232 (498)
T ss_pred HHHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCcC----CCCCcccccCccch
Confidence 34588999999999999862 1112 2568999999999998751 2111 11110 123334
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003187 615 DYAFLISGLLDLYEFGSGTKWLVWAIE 641 (840)
Q Consensus 615 DyA~~i~aLl~LYeaTgd~~yL~~A~~ 641 (840)
+ +++|.++||.+|||..|++.+..
T Consensus 233 E---l~WAAawLy~aTGd~~Yl~~~~~ 256 (498)
T PLN02613 233 E---LLWAAAWLYKATGEKKYLNYVIS 256 (498)
T ss_pred H---HHHHHHHHHHHhCCHHHHHHHHh
Confidence 4 67789999999999999987764
No 157
>PLN02412 probable glutathione peroxidase
Probab=96.20 E-value=0.012 Score=59.20 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=17.6
Q ss_pred cCCCEEEEEeccCChhhhh
Q 003187 137 RDVPIFLSIGYSTCHWCHV 155 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~ 155 (840)
.+|+|+|.|+++||+.|+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~ 46 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDS 46 (167)
T ss_pred CCCEEEEEEeCCCCCChHH
Confidence 5799999999999999995
No 158
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=96.15 E-value=0.028 Score=63.06 Aligned_cols=110 Identities=21% Similarity=0.269 Sum_probs=81.9
Q ss_pred cCcc-chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003187 122 DWFA-WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (840)
Q Consensus 122 ~W~~-~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g 200 (840)
.|.. ..++|++.||+.++..+|+|..+ -.--.+|++-++.|.-|...+-..||.|||+..+.. |.++.+ ++-
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~gd-dE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~a-----a~qFs~-IYp 74 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISGD-DEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVA-----ATQFSA-IYP 74 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEecC-chHhhHHhhccchhhhhhhhhhcceEEEEeccCchh-----hhhhhh-hcc
Confidence 3554 46999999998777555555554 456788999999999999999999999999987532 222222 236
Q ss_pred CCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHH
Q 003187 201 GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD 246 (840)
Q Consensus 201 ~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~ 246 (840)
..-.|..+|+.-.|.|+...+.+-. --++-.+|.+.|.
T Consensus 75 ~v~vPs~ffIg~sGtpLevitg~v~--------adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 75 YVSVPSIFFIGFSGTPLEVITGFVT--------ADELASSIEKVWL 112 (506)
T ss_pred cccccceeeecCCCceeEEeecccc--------HHHHHHHHHHHHH
Confidence 7789999999999999988654442 2267777888886
No 159
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.07 E-value=0.022 Score=47.70 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=38.2
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.-|+++||++|+.+.. .++. .+.-..++|.++.+...+.+ ....|..+.|+.++- |+.+.|
T Consensus 3 ~lf~~~~C~~C~~~~~-~l~~--------~~i~~~~vdi~~~~~~~~~~----~~~~~~~~vP~~~~~---~~~~~g 63 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKE-YLTS--------KGIAFEEIDVEKDSAAREEV----LKVLGQRGVPVIVIG---HKIIVG 63 (74)
T ss_pred EEEcCCCChhHHHHHH-HHHH--------CCCeEEEEeccCCHHHHHHH----HHHhCCCcccEEEEC---CEEEee
Confidence 4589999999999753 2322 24455667777655433222 223488999999873 666433
No 160
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.00 E-value=0.026 Score=55.63 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=19.7
Q ss_pred HHHHhcCCCEEEEEeccCChhhhh
Q 003187 132 AEARKRDVPIFLSIGYSTCHWCHV 155 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~ 155 (840)
..+.-.||+|+|.|.++||+.|..
T Consensus 16 ~l~~~~Gk~vvv~~~as~C~~c~~ 39 (153)
T TIGR02540 16 SLEKYRGKVSLVVNVASECGFTDQ 39 (153)
T ss_pred cHHHhCCCEEEEEEeCCCCCchhh
Confidence 334446999999999999999965
No 161
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.96 E-value=0.0055 Score=59.36 Aligned_cols=87 Identities=25% Similarity=0.316 Sum_probs=46.0
Q ss_pred hHHHHHHHHhcCCC-EEEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEE-cCCCCccHHHHHHHHHHHhcCCCC
Q 003187 127 GEEAFAEARKRDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKV-DREERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 127 ~~eAl~~Ak~e~Kp-I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkv-D~ee~pd~~~~y~~~~~~~~g~~G 203 (840)
.++..++.+.-.|+ -++-|+.+||+.|...= |-+.++...+ -+.+++ .|++++++-..|.+ .|...
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~v------P~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-----~g~~~ 97 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNV------PVLAKIAEANPNIEVRIILRDENKELMDQYLT-----NGGRS 97 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHH------HHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT------SS--
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHH------HHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-----CCCee
Confidence 35555665555565 56668999999999853 6666666654 455553 55555554444421 46778
Q ss_pred CCcEEEECCCCceeccccccC
Q 003187 204 WPLSVFLSPDLKPLMGGTYFP 224 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~~~tY~p 224 (840)
.|++||+|.+|+++..-+-.|
T Consensus 98 IP~~I~~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 98 IPTFIFLDKDGKELGRWGERP 118 (129)
T ss_dssp SSEEEEE-TT--EEEEEESS-
T ss_pred cCEEEEEcCCCCEeEEEcCCC
Confidence 999999999999985533333
No 162
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.89 E-value=2.9 Score=46.87 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCC-CCCCCCCcchHHHHHH
Q 003187 543 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFLIS 621 (840)
Q Consensus 543 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g-~~~~~~~leDyA~~i~ 621 (840)
.+++|..+++.+++ +++.+.+.++.+++.+.. . +.|.+.....+. ......+...-+=.+.
T Consensus 170 I~~~L~~~~~~~~~----------------~~~~~~i~~~i~~~~~~~-~-~~g~w~~~~~~~~~~~~~~wChG~~Gi~~ 231 (343)
T cd04794 170 ILYILLQTPLFLLK----------------PSLAPLIKRSLDYLLSLQ-F-PSGNFPSSLGNRKRDRLVQWCHGAPGIVY 231 (343)
T ss_pred HHHHHHhhhhhcCC----------------ccHHHHHHHHHHHHHHhh-c-cCCCCCCccCCCCCCccccccCCCchHHH
Confidence 36678888887765 689999999999998763 2 234332211111 1111234444455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 003187 622 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 701 (840)
Q Consensus 622 aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~ 701 (840)
+++.++++++|+++++.|+...+.+.+. | +.. .+..+- .| -+|| +..|++++.++++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~---~~~~lC-------HG--~~G~---~~~lL~~~~~~~~- 288 (343)
T cd04794 232 LLAKAYLVFKEEQYLEAAIKCGELIWKR------G-LLK---KGPGLC-------HG--IAGN---AYAFLLLYRLTGD- 288 (343)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh------C-Ccc---CCCccc-------cC--ccch---HHHHHHHHHHhCc-
Confidence 9999999999999999998887765321 1 100 000000 00 1333 5788999999986
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 003187 702 KSDYYRQNAEHSLAVFETRLK 722 (840)
Q Consensus 702 ~~~~y~~~A~~~l~~~~~~i~ 722 (840)
++|.++|..+.........
T Consensus 289 --~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 289 --LKYLYRACKFAEFLINYGF 307 (343)
T ss_pred --HHHHHHHHHHHHHHhcchh
Confidence 7899999988777665543
No 163
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.88 E-value=1 Score=50.47 Aligned_cols=96 Identities=15% Similarity=-0.004 Sum_probs=63.0
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHH
Q 003187 610 PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI 689 (840)
Q Consensus 610 ~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~ 689 (840)
.++....+=.+.+|+.++..++++++++.+.+..+...... . +.|.|.+...... ......-=-|..=.+.
T Consensus 161 ~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~-~-~~g~w~~~~~~~~-------~~~~~~wChG~~Gi~~ 231 (343)
T cd04794 161 LGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQ-F-PSGNFPSSLGNRK-------RDRLVQWCHGAPGIVY 231 (343)
T ss_pred cchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhh-c-cCCCCCCccCCCC-------CCccccccCCCchHHH
Confidence 47777888888899999999999999999999999887663 3 2354433211100 0011111123333555
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 003187 690 NLVRLASIVAGSKSDYYRQNAEHSLAVF 717 (840)
Q Consensus 690 ~LlrL~~lt~~~~~~~y~~~A~~~l~~~ 717 (840)
.|+.++.++++ +++.+.++.++...
T Consensus 232 ~l~~~~~~~~~---~~~~~~~~~~~~~~ 256 (343)
T cd04794 232 LLAKAYLVFKE---EQYLEAAIKCGELI 256 (343)
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 67788888875 78888888776653
No 164
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.82 E-value=0.022 Score=53.25 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.5
Q ss_pred cCCCEEEEEecc-CChhhhhhh
Q 003187 137 RDVPIFLSIGYS-TCHWCHVME 157 (840)
Q Consensus 137 e~KpI~l~~g~~-wC~wC~~me 157 (840)
.+||++|.|+.. ||+.|..--
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l 45 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAEL 45 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccch
Confidence 689999999999 999998643
No 165
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=95.78 E-value=0.012 Score=65.34 Aligned_cols=249 Identities=16% Similarity=0.207 Sum_probs=143.6
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC---CCceEeeccCCcccccccccccccchhHHHhhhhh
Q 003187 379 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP---GGEIFSAEDADSAETEGATRKKEGAFYVEDILGEH 454 (840)
Q Consensus 379 LYD-NA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~---~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~ 454 (840)
||+ -|-++.+|.++++.++|+.|.+.+++.++++.+.+... +.|+|. |.-|-.|+-..+.
T Consensus 7 ly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~--------------G~~Gi~~~l~~~~-- 70 (355)
T PF05147_consen 7 LYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFS--------------GLAGIAYALSYLS-- 70 (355)
T ss_dssp TTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTT--------------SCHHHHHHHHHHC--
T ss_pred CCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccC--------------ChHHHHHHHHHHH--
Confidence 455 67788999999999999999999999999998876542 222221 2223333211000
Q ss_pred HHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcch
Q 003187 455 AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDK 534 (840)
Q Consensus 455 ~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdK 534 (840)
.. ......+.+.++.+.+.+.+..........|
T Consensus 71 --------~~-------------------------------------~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~D-- 103 (355)
T PF05147_consen 71 --------KR-------------------------------------LGDEKYIEELLKRILNIIENSISNDSNNDYD-- 103 (355)
T ss_dssp --------CC-------------------------------------TCHHHHHHHHHHHHHHCHHHHHHCT--GGCS--
T ss_pred --------Hh-------------------------------------ccchHHHHHHHHHHHHHHHHhhhhcccccch--
Confidence 00 0011222345555555444433332211122
Q ss_pred hhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--CCeEEEeecCCCCCCCCC
Q 003187 535 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--THRLQHSFRNGPSKAPGF 612 (840)
Q Consensus 535 iltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~--~G~l~~~~~~g~~~~~~~ 612 (840)
++...-| ++..+...++.+++ +++++.+.+..+.|.+....-. ...+...+. ......|+
T Consensus 104 ~l~G~aG-i~~~ll~~~~~~~~----------------~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~G~ 165 (355)
T PF05147_consen 104 LLSGLAG-IGLYLLSLYEKTKD----------------PKYLDIIEKILEKLLESIINDDPSENQIGSEWK-EGFINLGF 165 (355)
T ss_dssp TTTSHHH-HHHHHCCHHHHHCC----------------HHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TTBEE-ST
T ss_pred hhcccHH-HHHHHHHHHhhccc----------------hHHHHHHHHHHHHHHHHHhhcccccCCCccccC-CCCccCCc
Confidence 2333333 35566666666655 6788888888888877665410 000111111 11224588
Q ss_pred cchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHH
Q 003187 613 LDDYAFLISGLLDLY-EFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 691 (840)
Q Consensus 613 leDyA~~i~aLl~LY-eaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~L 691 (840)
....+=.+.+|+.+| +.++++++++.++++.+...+++...+ ++|.......+. .. -..--.|.+=++..+
T Consensus 166 aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~--~~~WC~G~~Gi~~~~ 237 (355)
T PF05147_consen 166 AHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDD-GGWPDNRNNSNY-----KS--RPSWCYGSPGILLAL 237 (355)
T ss_dssp TTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGC-CT--SECTHHHH-----HC----SSSSSHHHHHHHH
T ss_pred cccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCccc-CCCCCCCCcccc-----cc--ccccccCcHHHHHHH
Confidence 899999999999999 699999999999999999988875433 345443221100 00 112345667778888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003187 692 VRLASIVAGSKSDYYRQNAEHSLAVFET 719 (840)
Q Consensus 692 lrL~~lt~~~~~~~y~~~A~~~l~~~~~ 719 (840)
.+++..+++ +.+.+.+++++.....
T Consensus 238 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 238 LKAYKILDD---EEYDEEAEQALESILQ 262 (355)
T ss_dssp HHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhch---HHHHHHHHHHHHHHHH
Confidence 889999864 7888888887777654
No 166
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.77 E-value=0.025 Score=54.34 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=19.0
Q ss_pred cCCCEEEEEeccCChh-hhhhhh
Q 003187 137 RDVPIFLSIGYSTCHW-CHVMEV 158 (840)
Q Consensus 137 e~KpI~l~~g~~wC~w-C~~me~ 158 (840)
.+|+++|.|+++||.. |...-.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~ 43 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLA 43 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHH
Confidence 5899999999999998 986544
No 167
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=95.71 E-value=0.054 Score=55.82 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=53.3
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHH-------------------HHHHH
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY-------------------MTYVQ 196 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y-------------------~~~~~ 196 (840)
.||+|+|.|+ ++||+.|.. |-..|.+ ...++-+.++..|=|..+. +...+.+ ....+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~-el~~l~~-~~~~f~~~g~~vigIS~D~-~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~ 106 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPT-ELGDVAD-HYEELQKLGVDVYSVSTDT-HFTHKAWHSSSETIAKIKYAMIGDPTGALTR 106 (187)
T ss_pred CCCeEEEEEECCCCCCcCHH-HHHHHHH-HHHHHHhCCCEEEEEeCCC-HHHHHHHHHhhccccCCceeEEEcCchHHHH
Confidence 5899999999 999999997 3333431 1222222344444443331 1111111 11112
Q ss_pred HhcCC----CCC--CcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 197 ALYGG----GGW--PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 197 ~~~g~----~G~--P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
.+|+ .|+ |.++++||+|++.+...+-.+. + ++.-++|+.+.
T Consensus 107 -~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~---~-~~~~eil~~l~ 153 (187)
T PRK10382 107 -NFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGI---G-RDASDLLRKIK 153 (187)
T ss_pred -HcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCC---C-CCHHHHHHHHH
Confidence 2244 367 9999999999998764332221 1 25666665553
No 168
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.67 E-value=0.018 Score=56.77 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=18.3
Q ss_pred HHhcCCCEEEEEeccCChhhhhh
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVM 156 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~m 156 (840)
+.-.||+|+|.|+++||+ |...
T Consensus 18 ~~~~Gk~vvl~fwatwC~-C~~e 39 (152)
T cd00340 18 SKYKGKVLLIVNVASKCG-FTPQ 39 (152)
T ss_pred HHhCCCEEEEEEEcCCCC-chHH
Confidence 333599999999999999 9763
No 169
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.57 E-value=0.077 Score=54.41 Aligned_cols=94 Identities=14% Similarity=0.003 Sum_probs=52.1
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHH-hcC--eEEEEEcCCCCccHHHHH-------------------HH
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLL-NDW--FVSIKVDREERPDVDKVY-------------------MT 193 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~l-n~~--FV~vkvD~ee~pd~~~~y-------------------~~ 193 (840)
.||+++|.|+ ++||+.|..-- -.|+ +..+.+ +++ +|.|-+|-. ...+.| ..
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el-~~l~--~~~~~~~~~gv~vi~VS~D~~---~~~~~~~~~~~~~~~l~fpllsD~~~~ 103 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTEL-EDLA--DKYAELKKLGVEVYSVSTDTH---FVHKAWHDTSEAIGKITYPMLGDPTGV 103 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHH-HHHH--HHHHHHHhcCCcEEEEeCCCH---HHHHHHHhhhhhccCcceeEEECCccH
Confidence 5899999999 99999999732 2232 222223 234 444444421 100000 01
Q ss_pred HHHHhcCCC------CCCcEEEECCCCceeccccc-cCCCCCCCcccHHHHHHHHH
Q 003187 194 YVQALYGGG------GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 194 ~~~~~~g~~------G~P~~vfl~p~g~~~~~~tY-~p~~~~~~~~~f~~~L~~i~ 242 (840)
..+. +|+. +.|.++|+|++|++.+.... .++. ....++|+.|.
T Consensus 104 ~a~~-~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~-----~~~~~ll~~l~ 153 (187)
T TIGR03137 104 LTRN-FGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIG-----RDASELLRKIK 153 (187)
T ss_pred HHHH-hCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCC-----CCHHHHHHHHH
Confidence 1122 2432 35999999999999876422 2222 25666666653
No 170
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=95.54 E-value=0.074 Score=62.86 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCC-CCCCccccccccCCCCCCCChHHHHHHHHH
Q 003187 614 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT-GEDPSVLLRVKEDHDGAEPSGNSVSVINLV 692 (840)
Q Consensus 614 eDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~-~~~~~l~~R~k~~~D~a~PS~Ns~~a~~Ll 692 (840)
|-..=.+-|||.+|+.|+|+.||++|++|.+.+..-| |..+|--+..- ........+.+ ....+..+.-+.+...+.
T Consensus 155 EttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AF-dTptgiP~~~vnl~~g~~~~~~~-~~~~~~lAe~gSl~LEF~ 232 (522)
T PTZ00470 155 ETTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAF-NEDTGFPASEINLATGRKSYPGW-AGGCSILSEVGTLQLEFN 232 (522)
T ss_pred eeehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccCCCCCccc-CCCccchhhhhhHHHHHH
Confidence 4445568899999999999999999999999999888 54455222111 00000000000 012233344455666788
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003187 693 RLASIVAGSKSDYYRQNAEHSLAVFET 719 (840)
Q Consensus 693 rL~~lt~~~~~~~y~~~A~~~l~~~~~ 719 (840)
+|+++||+ +.|.+.++++...+..
T Consensus 233 ~LS~lTGd---~kY~~~a~~i~~~l~~ 256 (522)
T PTZ00470 233 YLSEITGD---PKYAEYVDKVMDALFS 256 (522)
T ss_pred HHHHhhCC---HHHHHHHHHHHHHHHh
Confidence 99999996 8899999999888754
No 171
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.48 E-value=0.084 Score=53.18 Aligned_cols=82 Identities=9% Similarity=-0.006 Sum_probs=46.7
Q ss_pred HHhcCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHH-------------------
Q 003187 134 ARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM------------------- 192 (840)
Q Consensus 134 Ak~e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~------------------- 192 (840)
..-.||+++|.|+ ++||+.|..--. .|+ ++.+.+. +++..|-|..+.... ...+.
T Consensus 25 ~~~~Gk~vvl~F~~~~~c~~C~~~l~-~l~--~~~~~~~~~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~f~~l~D 100 (173)
T cd03015 25 SDYKGKWVVLFFYPLDFTFVCPTEII-AFS--DRYEEFKKLNAEVLGVSTDSHFS-HLAWRNTPRKEGGLGKINFPLLAD 100 (173)
T ss_pred HHhCCCEEEEEEECCCCCCcCHHHHH-HHH--HHHHHHHHCCCEEEEEecCCHHH-HHHHHHhhhhhCCccCcceeEEEC
Confidence 3345899999999 899999998432 232 2333332 345444444432111 11111
Q ss_pred ---HHHHHhcCCC------CCCcEEEECCCCceeccc
Q 003187 193 ---TYVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 193 ---~~~~~~~g~~------G~P~~vfl~p~g~~~~~~ 220 (840)
...+. +|+. .+|+++++|++|+..+..
T Consensus 101 ~~~~~~~~-~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 101 PKKKISRD-YGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred CchhHHHH-hCCccccCCceeeEEEEECCCCeEEEEE
Confidence 11111 2432 578999999999988764
No 172
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.42 E-value=0.049 Score=45.56 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=36.7
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
++.|+.+||++|+.+.. .+.. . ++-...+|.+..++..+.+ +.+++.+++|+.++ +|+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~-~l~~------~--~i~~~~~~i~~~~~~~~~~----~~~~~~~~vP~i~~---~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKR-FLDE------R--GIPFEEVDVDEDPEALEEL----KKLNGYRSVPVVVI---GDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHH-HHHH------C--CCCeEEEeCCCCHHHHHHH----HHHcCCcccCEEEE---CCEEEec
Confidence 45689999999998643 2221 2 2333345555444443333 33457889999876 4455544
No 173
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.39 E-value=0.12 Score=60.42 Aligned_cols=167 Identities=12% Similarity=0.053 Sum_probs=105.8
Q ss_pred hhcHHHHHHHHHHHHHHHh--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee--cC-CCCCC-
Q 003187 536 IVSWNGLVISSFARASKIL--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF--RN-GPSKA- 609 (840)
Q Consensus 536 ltsWNal~I~ALa~A~~~~--~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~--~~-g~~~~- 609 (840)
+-.-+...+.+|.-||... +| +.+|+.|+++++.|...| +..+|--+... +. +....
T Consensus 75 ~fEt~iR~lGgLLSay~ls~~~d----------------~~lL~kA~~lad~Ll~aF-~t~~g~P~~~~n~~~~~~~~~~ 137 (452)
T PF01532_consen 75 VFETTIRVLGGLLSAYDLSGEGD----------------PILLSKAVELADRLLPAF-DTPTGIPYPRVNLRTGGKNRWP 137 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHGGGG-SSSSS---SEEETTTCEEETTC
T ss_pred hHHhhhHhhhhhHHHHHHHhccc----------------hHHHHHHHHHHHHHHHhc-cCCCccccceeeecccCCCCCC
Confidence 3345788999999999999 77 789999999999999988 43355433222 22 11111
Q ss_pred --CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCC--CCCccccccccCCCCCCCChHH
Q 003187 610 --PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG--EDPSVLLRVKEDHDGAEPSGNS 685 (840)
Q Consensus 610 --~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~--~~~~l~~R~k~~~D~a~PS~Ns 685 (840)
...+.+.+-++.=+..|.++|||++|.+.|..+.+.+.+.-......|.+-..- ..+... .......+++
T Consensus 138 ~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~------~~~~~~Ga~~ 211 (452)
T PF01532_consen 138 GGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWT------SSSISLGAGG 211 (452)
T ss_dssp CGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BS------STEE-SSTTT
T ss_pred CCcccccccccceechhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCccc------ccccccCCCc
Confidence 123556666778889999999999999999999988876221000112221110 001111 0112223333
Q ss_pred -HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 003187 686 -VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 726 (840)
Q Consensus 686 -~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 726 (840)
..-+-|++.+.++|+. ++.|++.-++.++.+...+...|.
T Consensus 212 DS~YEYLlK~~lL~g~~-d~~~~~~~~~a~~~i~~~Ll~~~~ 252 (452)
T PF01532_consen 212 DSFYEYLLKMYLLLGGT-DEQYRDMYDEAVDAIKKHLLFRPS 252 (452)
T ss_dssp HHHHHHHHHHHHHTTTT-THHHHHHHHHHHHHHHHHTEEEBT
T ss_pred chHHHhhhhhhhhcCcc-chHHHHHHHHHHHHHHHHhhccCC
Confidence 4678899999999853 488999888888888777655433
No 174
>PLN02175 endoglucanase
Probab=95.38 E-value=0.52 Score=55.29 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCC-CCCCCCCcchHHH
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAF 618 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g-~~~~~~~leDyA~ 618 (840)
-+-+..|||.|++++++. +..| ..++|+.|+++++|..++- |.+..+.... .+........+=.
T Consensus 171 aae~AAALAaaS~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~-----g~y~~~~~~~~~~~Y~s~s~y~DE 235 (484)
T PLN02175 171 AAETAAALAAASMVFRKV--DSKY--------SRLLLATAKKVMQFAIQYR-----GAYSDSLSSSVCPFYCSYSGYKDE 235 (484)
T ss_pred HHHHHHHHHHHHHHhccc--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCcccCccccccCccccCCCccHH
Confidence 378899999999999861 1112 1467999999999998742 2221110000 0111111112245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 003187 619 LISGLLDLYEFGSGTKWLVWAIE 641 (840)
Q Consensus 619 ~i~aLl~LYeaTgd~~yL~~A~~ 641 (840)
+++|.++||.+|||..|++.+..
T Consensus 236 l~WAAawLY~ATgd~~Yl~~~~~ 258 (484)
T PLN02175 236 LMWGASWLLRATNDPYYANFIKS 258 (484)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Confidence 68899999999999999986654
No 175
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.27 E-value=0.059 Score=54.22 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=53.0
Q ss_pred cCCCEEEEEeccC-ChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH----------------HHHHhc
Q 003187 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT----------------YVQALY 199 (840)
Q Consensus 137 e~KpI~l~~g~~w-C~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~----------------~~~~~~ 199 (840)
.||+|+|.|+++| |+.|...-. .|++ ..+.+ +++..|-|..+. +...+.+.+ ......
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~-~l~~--~~~~~-~~~~vv~vs~D~-~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~ 117 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVR-KFNQ--EAAEL-DNTVVLCISADL-PFAQKRFCGAEGLENVITLSDFRDHSFGKAY 117 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHH-HHHH--HHHHc-CCcEEEEEeCCC-HHHHHHHHHhCCCCCceEeecCCccHHHHHh
Confidence 4899999999999 999998432 2221 12222 134344343332 111111110 111123
Q ss_pred CCCCCC---------cEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 200 GGGGWP---------LSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 200 g~~G~P---------~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
|+.+.| +++++|++|++.+...+.+.. ..+.+-++|+.+.
T Consensus 118 gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~---~~~~~~~~l~~l~ 166 (167)
T PRK00522 118 GVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEIT---NEPDYDAALAALK 166 (167)
T ss_pred CCeecccccCCceeeEEEEECCCCeEEEEEECCCcC---CCCCHHHHHHHhh
Confidence 555555 999999999998764322211 2356777776653
No 176
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.25 E-value=0.085 Score=45.83 Aligned_cols=64 Identities=23% Similarity=0.309 Sum_probs=39.7
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+.|+.+||++|+.+.+ .+ +.++..|..+.+|.++.. ..+...++..+|..++|.. |++ |+.+.+
T Consensus 3 ~~y~~~~Cp~C~~~~~-~l------~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~g~~~~P~v-~~~--g~~igg 66 (82)
T cd03419 3 VVFSKSYCPYCKRAKS-LL------KELGVKPAVVELDQHEDG---SEIQDYLQELTGQRTVPNV-FIG--GKFIGG 66 (82)
T ss_pred EEEEcCCCHHHHHHHH-HH------HHcCCCcEEEEEeCCCCh---HHHHHHHHHHhCCCCCCeE-EEC--CEEEcC
Confidence 5688999999999864 22 223336777777776442 1122233445688899996 554 555543
No 177
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.19 E-value=0.048 Score=52.77 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=49.3
Q ss_pred cCCCEEEEEeccC-ChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCc--------------cHHHHH--HHHHHHhc
Q 003187 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP--------------DVDKVY--MTYVQALY 199 (840)
Q Consensus 137 e~KpI~l~~g~~w-C~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p--------------d~~~~y--~~~~~~~~ 199 (840)
.||+++|.|++.| |..|..--. .|+ +..+.. +++..|-|..+... .+-..+ ...... .
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~-~l~--~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~-~ 99 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTK-RFN--KEAAKL-DNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA-Y 99 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHH-HHH--HHHHhc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH-h
Confidence 4899999999998 699997432 222 112222 24444444333110 000001 111122 2
Q ss_pred CCC----C--CCcEEEECCCCceeccc-cccCCCCCCCcccHHHHH
Q 003187 200 GGG----G--WPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTIL 238 (840)
Q Consensus 200 g~~----G--~P~~vfl~p~g~~~~~~-tY~p~~~~~~~~~f~~~L 238 (840)
|+. | .|++++++++|++++.. ++-+.. .|.+-++|
T Consensus 100 gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~----~~~~~~~~ 141 (143)
T cd03014 100 GVLIKDLGLLARAVFVIDENGKVIYVELVPEITD----EPDYEAAL 141 (143)
T ss_pred CCeeccCCccceEEEEEcCCCeEEEEEECCCccc----CCCHHHHh
Confidence 432 2 68999999999998764 233322 35666655
No 178
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=95.18 E-value=6 Score=46.17 Aligned_cols=129 Identities=17% Similarity=0.207 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCC-----------------CCCcchHHHHHHHHHHHHHHcCCHHH
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------------PGFLDDYAFLISGLLDLYEFGSGTKW 635 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~-----------------~~~leDyA~~i~aLl~LYeaTgd~~y 635 (840)
++.++.++....--.+..||++++.|.-.+.+|+... .++.-+ ......++..|..++|+.-
T Consensus 327 ~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~-~~yll~~vra~~~s~D~~L 405 (557)
T PF06917_consen 327 KEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPAD-PDYLLPYVRAYRLSRDPEL 405 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE---HHHHHHHHHHHHHS--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCc-hhHhHHHHHHHHcCCCHHH
Confidence 6788888888877778889999999888888876411 111112 3346699999999999998
Q ss_pred HHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003187 636 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 715 (840)
Q Consensus 636 L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~ 715 (840)
.+.+..|+. +|= =|-.-......+.+ +....+....++.+|+.|++.|++ +.|++.|+++-+
T Consensus 406 w~~~~~m~~----~~g---LGdig~~~~~~~~~--------~~~~~~~sp~~L~allEL~~atq~---~~~l~lA~~~g~ 467 (557)
T PF06917_consen 406 WDLARTMAH----HFG---LGDIGNAAGKEPRV--------NMQTDNASPYLLFALLELYQATQD---ARYLELADQVGE 467 (557)
T ss_dssp HHHHHHHHH----HTT----EE-TTBTTBS-EE---------TT-----HHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHh----hcC---cccccCcccccccc--------ccCCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 888887774 331 11111111111111 223334445788899999999986 889999987766
Q ss_pred HHHHH
Q 003187 716 VFETR 720 (840)
Q Consensus 716 ~~~~~ 720 (840)
.+..+
T Consensus 468 ~l~~~ 472 (557)
T PF06917_consen 468 NLFEQ 472 (557)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 179
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.10 E-value=0.052 Score=48.03 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=41.1
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~e-e~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
++++++.|+++||+.|+.+ .|.+.++..+ ....+.+|.. ..+++...|.. ....+|..++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~p~~~~ 95 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV------AVRSIPTLLL 95 (127)
T ss_pred CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh------hhccCCeEEE
Confidence 9999999999999999998 4444444433 4567777775 55666655522 1446687763
No 180
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.03 E-value=0.072 Score=54.41 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=15.6
Q ss_pred HhcCCCEE-EEEeccCChhhhh
Q 003187 135 RKRDVPIF-LSIGYSTCHWCHV 155 (840)
Q Consensus 135 k~e~KpI~-l~~g~~wC~wC~~ 155 (840)
.-.||+|+ +.+.++||+.|..
T Consensus 37 ~~~Gk~vvlv~n~atwCp~C~~ 58 (183)
T PTZ00256 37 KFKGKKAIIVVNVACKCGLTSD 58 (183)
T ss_pred HhCCCcEEEEEEECCCCCchHH
Confidence 33589764 4458999999996
No 181
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.056 Score=50.48 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=46.7
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
..++-++++-|+ |.-+||.+||.+ ++.|.+ ++-++..|.+|..++.. .++.++..++|+...|..++
T Consensus 7 v~~~i~~~~VVi--fSKs~C~~c~~~-k~ll~~------~~v~~~vvELD~~~~g~---eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 7 VRKMISENPVVI--FSKSSCPYCHRA-KELLSD------LGVNPKVVELDEDEDGS---EIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHhhcCCEEE--EECCcCchHHHH-HHHHHh------CCCCCEEEEccCCCCcH---HHHHHHHHhcCCCCCCEEEE
Confidence 445555555444 677999999995 557766 66688999999886553 23444556678888897654
No 182
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=94.86 E-value=0.068 Score=45.62 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=37.8
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhc-CCCCCCcEEEECCCCceecc
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~-g~~G~P~~vfl~p~g~~~~~ 219 (840)
+.-|+++||+.|+.+.. .+ +.+.-.|. .+|.++.++....+ ..++ +..++|+.+ -.+|+++..
T Consensus 2 v~ly~~~~C~~C~~~~~-~L------~~~~~~~~--~idi~~~~~~~~~~----~~~~~~~~~vP~i~--~~~g~~l~~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMR-TL------DKLGAAYE--WVDIEEDEGAADRV----VSVNNGNMTVPTVK--FADGSFLTN 65 (77)
T ss_pred EEEEECCCChhHHHHHH-HH------HHcCCceE--EEeCcCCHhHHHHH----HHHhCCCceeCEEE--ECCCeEecC
Confidence 34589999999999864 11 22222343 46766655544333 3333 788999863 346666654
No 183
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.027 Score=64.21 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=51.9
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~ 211 (840)
.+..+++.||.|+++||+.|++|+.+..+-+ ..+. ......++|.+..+.+...+ ++.++|+.+|+-
T Consensus 158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a---~~~~~~~~v~~~~~d~~~~~~~~~~~--------~v~~~Pt~~~f~ 226 (383)
T KOG0191|consen 158 VKDSDADWLVEFYAPWCGHCKKLAPEWEKLA---KLLKSKENVELGKIDATVHKSLASRL--------EVRGYPTLKLFP 226 (383)
T ss_pred hhccCcceEEEEeccccHHhhhcChHHHHHH---HHhccCcceEEEeeccchHHHHhhhh--------cccCCceEEEec
Confidence 5667889999999999999999976544333 3443 46777788887444444444 889999997776
Q ss_pred CCCc
Q 003187 212 PDLK 215 (840)
Q Consensus 212 p~g~ 215 (840)
++.+
T Consensus 227 ~~~~ 230 (383)
T KOG0191|consen 227 PGEE 230 (383)
T ss_pred CCCc
Confidence 6655
No 184
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=94.51 E-value=1.7 Score=49.36 Aligned_cols=84 Identities=15% Similarity=0.038 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 620 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 620 (840)
.=++.++..+++++++ +++.+.|.++.+.+...... .+ ....+++....+=.+
T Consensus 247 ~Gi~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~--~~---------~~~~~~lChG~~G~~ 299 (382)
T cd04793 247 PGIARALQLAGKALDD----------------QKLQEAAEKILKAALKDKKQ--LS---------KLISPTLCHGLAGLL 299 (382)
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHhChhh--hc---------cCCCCCcCccHHHHH
Confidence 3346677788888887 78999999998776643211 00 112346777788889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003187 621 SGLLDLYEFGSGTKWLVWAIELQNTQDELFL 651 (840)
Q Consensus 621 ~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~ 651 (840)
..|+.+|+.|++++|++.|..+.+.+.+.+-
T Consensus 300 ~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 330 (382)
T cd04793 300 FIFYLLYKDTNTNEFKSALEYLLNQIISSYS 330 (382)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988764
No 185
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.40 E-value=0.093 Score=50.17 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=19.0
Q ss_pred cCCCEEEEEe-ccCChhhhhhhh
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEV 158 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~ 158 (840)
.+|+++|.|+ +.||.+|.....
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~ 43 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELC 43 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHH
Confidence 5999999998 789999998644
No 186
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.30 E-value=0.15 Score=47.00 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=40.0
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
-++++-+ -|+.+||+||+.+.+ +.+-++-.|..| |+++.|+.. .+++.+...+|...+|.. |++ |
T Consensus 5 i~~~~Vv--vysk~~Cp~C~~ak~-------~L~~~~i~~~~v--did~~~~~~-~~~~~l~~~tg~~tvP~V-fi~--g 69 (99)
T TIGR02189 5 VSEKAVV--IFSRSSCCMCHVVKR-------LLLTLGVNPAVH--EIDKEPAGK-DIENALSRLGCSPAVPAV-FVG--G 69 (99)
T ss_pred hccCCEE--EEECCCCHHHHHHHH-------HHHHcCCCCEEE--EcCCCccHH-HHHHHHHHhcCCCCcCeE-EEC--C
Confidence 3445533 378899999999865 222233345544 444555532 334444555688888986 544 4
Q ss_pred ceec
Q 003187 215 KPLM 218 (840)
Q Consensus 215 ~~~~ 218 (840)
+.|.
T Consensus 70 ~~iG 73 (99)
T TIGR02189 70 KLVG 73 (99)
T ss_pred EEEc
Confidence 5553
No 187
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.28 E-value=0.15 Score=54.99 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhc
Q 003187 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVE 159 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~e 159 (840)
++..-..+.|.+++-|.-..|++||+++.+
T Consensus 109 ~i~~g~~~ak~~I~vFtDp~CpyC~kl~~~ 138 (251)
T PRK11657 109 WILDGKADAPRIVYVFADPNCPYCKQFWQQ 138 (251)
T ss_pred CccccCCCCCeEEEEEECCCChhHHHHHHH
Confidence 344445677888999999999999999865
No 188
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=94.23 E-value=0.54 Score=54.97 Aligned_cols=232 Identities=16% Similarity=0.126 Sum_probs=138.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHH
Q 003187 371 HVPHFEKMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVE 448 (840)
Q Consensus 371 ~vPHFEKMLYDNA~Ll~~ya~Ay~~t--gd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~ 448 (840)
.|.-||- +-+.|..+.-||.++ +|+.+++.|.+..+.|+.-+..|.|-.+...+-.+.
T Consensus 72 ~vs~fEt----~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~---------------- 131 (452)
T PF01532_consen 72 TVSVFET----TIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTG---------------- 131 (452)
T ss_dssp EEEHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTC----------------
T ss_pred eechHHh----hhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeeccc----------------
Confidence 3555664 556999999999999 999999999999999999887777766554433110
Q ss_pred HhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 003187 449 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPR 528 (840)
Q Consensus 449 ~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~ 528 (840)
+. + .+.+... -+|+ .
T Consensus 132 -------------------~~--------~--~~~~~~~--------~la~-~--------------------------- 146 (452)
T PF01532_consen 132 -------------------GK--------N--RWPGGES--------SLAE-A--------------------------- 146 (452)
T ss_dssp -------------------EE--------E--TTCCGEE--------EHHH-H---------------------------
T ss_pred -------------------CC--------C--CCCCCcc--------cccc-c---------------------------
Confidence 00 0 0011100 0111 1
Q ss_pred CCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc-cCCCeEEEee--cCC
Q 003187 529 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD-EQTHRLQHSF--RNG 605 (840)
Q Consensus 529 P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d-~~~G~l~~~~--~~g 605 (840)
|=++-=+.+.++++|+ ++|.+.|.++.+.|.+.-.. +..|.+-... ..|
T Consensus 147 ------------gs~~lEf~~LS~lTgd----------------~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g 198 (452)
T PF01532_consen 147 ------------GSLQLEFTRLSQLTGD----------------PKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTG 198 (452)
T ss_dssp ------------CSSHHHHHHHHHHHS-----------------THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS
T ss_pred ------------ccceechhHHHHHhhc----------------cHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcC
Confidence 2223345668889998 89999999999999873211 1223322211 223
Q ss_pred CCC-----CCCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccc--cCC--c-cccCCCCC-Ccccccc
Q 003187 606 PSK-----APGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDR--EGG--G-YFNTTGED-PSVLLRV 672 (840)
Q Consensus 606 ~~~-----~~~~leDyA~~i~aLl~LYeaTg--d~~yL~~A~~L~~~~~~~F~D~--~~G--g-yf~t~~~~-~~l~~R~ 672 (840)
... ..+..+- +-+-|+..|..++ |+.|++.=.+..+.+.++..-. ..+ + .|-..... ......
T Consensus 199 ~~~~~~~~~Ga~~DS---~YEYLlK~~lL~g~~d~~~~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~- 274 (452)
T PF01532_consen 199 KWTSSSISLGAGGDS---FYEYLLKMYLLLGGTDEQYRDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLS- 274 (452)
T ss_dssp -BSSTEE-SSTTTHH---HHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEE-
T ss_pred cccccccccCCCcch---HHHhhhhhhhhcCccchHHHHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCcccc-
Confidence 221 2223332 2467888888999 9999999998899998885322 111 2 22221110 000000
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 003187 673 KEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 727 (840)
Q Consensus 673 k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~ 727 (840)
..-++-+..+-.++-|+....+ ++.+.+.|+++.+.........|++
T Consensus 275 ------~~~~hLsCF~pG~l~Lg~~~~~--~~~~~~~A~~l~~~C~~~y~~~~tG 321 (452)
T PF01532_consen 275 ------PKMDHLSCFLPGMLALGAKLFN--DEGDLELAEELTETCYWLYKSTPTG 321 (452)
T ss_dssp ------SEEECGGGGHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred ------ccccchhhcchhHHHHhhcccC--chhHHHHHHHHHHHHHHHHHhcccC
Confidence 1113445566677778877764 3889999999999988877777665
No 189
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=94.14 E-value=0.081 Score=51.50 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=38.4
Q ss_pred HHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccc-cccC
Q 003187 164 EGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYFP 224 (840)
Q Consensus 164 ~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~-tY~p 224 (840)
+++++.+.. .+.++|||+++.+++...| |+.|+|+++|+. +|+.+... ++.|
T Consensus 59 eELa~e~~~~~v~~akVDiD~~~~LA~~f--------gV~siPTLl~Fk-dGk~v~~i~G~~~ 112 (132)
T PRK11509 59 GELLREFPDYTWQVAIADLEQSEAIGDRF--------GVFRFPATLVFT-GGNYRGVLNGIHP 112 (132)
T ss_pred HHHHHHhcCCceEEEEEECCCCHHHHHHc--------CCccCCEEEEEE-CCEEEEEEeCcCC
Confidence 345555542 4789999999999999888 999999888775 56766543 4444
No 190
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.00 E-value=0.11 Score=45.62 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=38.8
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
|+++++- +-++.+||++|+...+ .++ ..+=.|.. +|.++.++... ....+|...+|..++ +
T Consensus 4 ~~~~~~V--~ly~~~~Cp~C~~ak~-~L~------~~gi~y~~--idi~~~~~~~~-----~~~~~g~~~vP~i~i---~ 64 (79)
T TIGR02190 4 ARKPESV--VVFTKPGCPFCAKAKA-TLK------EKGYDFEE--IPLGNDARGRS-----LRAVTGATTVPQVFI---G 64 (79)
T ss_pred cCCCCCE--EEEECCCCHhHHHHHH-HHH------HcCCCcEE--EECCCChHHHH-----HHHHHCCCCcCeEEE---C
Confidence 4444553 3489999999999754 332 23334555 45544433221 123458889999864 5
Q ss_pred Cceecc
Q 003187 214 LKPLMG 219 (840)
Q Consensus 214 g~~~~~ 219 (840)
|+.+.+
T Consensus 65 g~~igG 70 (79)
T TIGR02190 65 GKLIGG 70 (79)
T ss_pred CEEEcC
Confidence 666543
No 191
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=93.98 E-value=0.14 Score=49.63 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=41.9
Q ss_pred cC-CCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH----------------HHHH
Q 003187 137 RD-VPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT----------------YVQA 197 (840)
Q Consensus 137 e~-KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~----------------~~~~ 197 (840)
.+ |+++|.|+ +.||..|...- ..+ .++.+.+. +++..|-|..+. ++..+.|.+ ....
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~-~~l--~~~~~~~~~~~v~vi~vs~d~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 101 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKEL-CAL--RDSLELFEAAGAEVLGISVDS-PFSLRAWAEENGLTFPLLSDFWPHGEVAK 101 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHH-HHH--HHHHHHHHhCCCEEEEecCCC-HHHHHHHHHhcCCCceEecCCCchhHHHH
Confidence 35 88888876 89999997532 222 23333443 244444444332 221222211 0111
Q ss_pred hcCCC----CC--CcEEEECCCCceecc
Q 003187 198 LYGGG----GW--PLSVFLSPDLKPLMG 219 (840)
Q Consensus 198 ~~g~~----G~--P~~vfl~p~g~~~~~ 219 (840)
..|.. |. |+++++|++|+..+.
T Consensus 102 ~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 102 AYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred HhCCccccCCCccceEEEECCCCEEEEE
Confidence 12333 33 488999999998765
No 192
>PRK15000 peroxidase; Provisional
Probab=93.94 E-value=0.16 Score=52.79 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=54.7
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHH----------------------HH
Q 003187 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY----------------------MT 193 (840)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y----------------------~~ 193 (840)
.||+|+|.|+. +||..|..- -..|++ ...++-++++..|-|..+.. ...+.+ .+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~E-l~~l~~-~~~~f~~~g~~vigvS~D~~-~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ 109 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSE-LIAFDK-RYEEFQKRGVEVVGVSFDSE-FVHNAWRNTPVDKGGIGPVKYAMVADVKRE 109 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHH-HHHHHH-HHHHHHHCCCEEEEEECCCH-HHHHHHHhhHHHhCCccccCceEEECCCcH
Confidence 58999999999 699999983 333432 11222223444444433311 111110 01
Q ss_pred HHHHhcCCC------CCCcEEEECCCCceeccccc-cCCCCCCCcccHHHHHHHHH
Q 003187 194 YVQALYGGG------GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 194 ~~~~~~g~~------G~P~~vfl~p~g~~~~~~tY-~p~~~~~~~~~f~~~L~~i~ 242 (840)
..+ ..|+. +.|.++|+||+|++.+...+ .|.. .++-++|+.+.
T Consensus 110 ia~-~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~g-----r~~~eilr~l~ 159 (200)
T PRK15000 110 IQK-AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLG-----RNIDEMLRMVD 159 (200)
T ss_pred HHH-HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCC-----CCHHHHHHHHH
Confidence 111 12443 68999999999999886433 3332 26777776664
No 193
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=93.72 E-value=6.4 Score=43.36 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 003187 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (840)
Q Consensus 335 ~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r 414 (840)
+++.+++...+.++.. |-+-+|||-- |. +-+=-.+..|..+.++.+|.+.. +.-..+.+++++||.+
T Consensus 48 ~~~~~~i~~g~~r~l~---~q~~dGsf~~------w~--~~~~s~wlTA~v~~~l~~a~~~~--~v~~~~l~~a~~wL~~ 114 (297)
T cd02896 48 DEALKYIRQGYQRQLS---YRKPDGSYAA------WK--NRPSSTWLTAFVVKVFSLARKYI--PVDQNVICGSVNWLIS 114 (297)
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCccC------CC--CCCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHh
Confidence 4678888888888875 6667899953 31 11344667999999999997654 2335788999999998
Q ss_pred hccCCCCceEe
Q 003187 415 DMIGPGGEIFS 425 (840)
Q Consensus 415 ~m~~~~Ggfys 425 (840)
. +.++|+|-.
T Consensus 115 ~-Q~~dG~f~e 124 (297)
T cd02896 115 N-QKPDGSFQE 124 (297)
T ss_pred c-CCCCCeeCC
Confidence 6 888998864
No 194
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.69 E-value=0.23 Score=41.16 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=37.0
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+-++++||++|+.... +|++ +.-...+|.+..++..+. ++..+|...+|+.++ +|+.+.+
T Consensus 3 ~ly~~~~Cp~C~~~~~----------~L~~~~i~~~~~di~~~~~~~~~----l~~~~~~~~~P~~~~---~~~~igg 63 (72)
T cd02066 3 VVFSKSTCPYCKRAKR----------LLESLGIEFEEIDILEDGELREE----LKELSGWPTVPQIFI---NGEFIGG 63 (72)
T ss_pred EEEECCCCHHHHHHHH----------HHHHcCCcEEEEECCCCHHHHHH----HHHHhCCCCcCEEEE---CCEEEec
Confidence 3578999999999864 2222 233345677766653333 333457788997754 5666654
No 195
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=93.69 E-value=15 Score=44.93 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=44.2
Q ss_pred CCeEEEEec-CCCCCCCCCcchHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceEe
Q 003187 358 GGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 358 ~GGF~RYsv-D~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tg--d~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
.||+- |+. +..|.++- |-|..+.++..+....+ ++.+.+.++++++||++ |++++|||.+
T Consensus 359 ~GGW~-fs~~~~~~pd~d------~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~-~Qn~dGgf~~ 421 (634)
T cd02892 359 KGGWA-FSTANQGYPDSD------DTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLG-MQNSNGGFAA 421 (634)
T ss_pred CCCCC-CCCCCCCCCCcC------chHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHh-ccCCCCCEee
Confidence 57775 564 33443332 67888888888776653 56788999999999996 7899999854
No 196
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=93.62 E-value=0.23 Score=40.89 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=34.2
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
+-|+.+||++|+...+ +|++ ++=...+|.++.++..+. ++..+|..+.|+.++
T Consensus 2 ~vy~~~~C~~C~~~~~----------~L~~~~i~y~~~dv~~~~~~~~~----l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKE----------FLDEKGIPYEEVDVDEDEEAREE----LKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEESTTSHHHHHHHH----------HHHHTTBEEEEEEGGGSHHHHHH----HHHHHSSSSSSEEEE
T ss_pred EEEEcCCCcCHHHHHH----------HHHHcCCeeeEcccccchhHHHH----HHHHcCCCccCEEEE
Confidence 4588999999999754 3443 333444566655543333 344458899999886
No 197
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.52 E-value=0.34 Score=46.65 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=24.5
Q ss_pred cCCCEEEE-EeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCC
Q 003187 137 RDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE 183 (840)
Q Consensus 137 e~KpI~l~-~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee 183 (840)
.+|+++|. |.+.||+.|+.--. .++ ++.+.+. .++..|-|..+.
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~-~l~--~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLR-ALS--KLLPELDALGVELVAVGPES 67 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHH-HHH--HHHHHHHhcCeEEEEEeCCC
Confidence 34555555 56999999997543 222 2333332 356566665543
No 198
>PRK13190 putative peroxiredoxin; Provisional
Probab=93.22 E-value=0.19 Score=52.27 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=24.4
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
+.|.++|++|+|++.+...|-.+.+ .++-++|+.|.
T Consensus 116 ~~p~~fiId~~G~I~~~~~~~~~~g----r~~~ellr~l~ 151 (202)
T PRK13190 116 TVRGVFIIDPNQIVRWMIYYPAETG----RNIDEIIRITK 151 (202)
T ss_pred EEeEEEEECCCCEEEEEEEeCCCCC----CCHHHHHHHHH
Confidence 4899999999999887654433322 25666665554
No 199
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.19 E-value=0.19 Score=60.19 Aligned_cols=79 Identities=25% Similarity=0.350 Sum_probs=60.9
Q ss_pred hHHHHHHHHhcCCCEEEEE-eccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 127 GEEAFAEARKRDVPIFLSI-GYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~-g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
.++.+++.++-+||+-|.+ ...+|++|....+.. .+++ ..|.+...-.+|.++.|++...| ++.+.|
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~---~~~~-~~~~~i~~~~i~~~~~~~~~~~~--------~v~~vP 531 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAA---QRIA-SLNPNVEAEMIDVSHFPDLKDEY--------GIMSVP 531 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHH---HHHH-HhCCCceEEEEECcccHHHHHhC--------CceecC
Confidence 5778888889999997776 799999999876533 3333 34556777778999999998877 888999
Q ss_pred cEEEECCCCceeccc
Q 003187 206 LSVFLSPDLKPLMGG 220 (840)
Q Consensus 206 ~~vfl~p~g~~~~~~ 220 (840)
++|+ ||+.++.|
T Consensus 532 ~~~i---~~~~~~~G 543 (555)
T TIGR03143 532 AIVV---DDQQVYFG 543 (555)
T ss_pred EEEE---CCEEEEee
Confidence 9987 56666553
No 200
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.15 E-value=0.31 Score=57.75 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=67.4
Q ss_pred cccCCChhhhcc---cCCCccCccchHHHHHHHHhcCCCE-EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc
Q 003187 105 LAAEHSPYLLQH---AHNPVDWFAWGEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (840)
Q Consensus 105 L~~e~SpYL~~h---a~~~v~W~~~~~eAl~~Ak~e~KpI-~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD 180 (840)
..+|=+++++.. +.++.+ -.++..++.++-+||+ +.-|...+|++|...-. .+ .++ +..|.+...-.+|
T Consensus 82 ~g~Ef~s~i~~i~~~~~~~~~---l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~-~~--~~~-a~~~~~i~~~~id 154 (517)
T PRK15317 82 MGHEFTSLVLALLQVGGHPPK---LDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQ-AL--NLM-AVLNPNITHTMID 154 (517)
T ss_pred ccHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHH-HH--HHH-HHhCCCceEEEEE
Confidence 345556665433 333332 2578888889989998 55589999999987543 33 333 3467777777789
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 181 ~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
..+.|++...| ++.++|++++ +|+.++.
T Consensus 155 ~~~~~~~~~~~--------~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 155 GALFQDEVEAR--------NIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred chhCHhHHHhc--------CCcccCEEEE---CCcEEEe
Confidence 99999999887 7889999976 4455544
No 201
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=93.05 E-value=1.1 Score=48.29 Aligned_cols=155 Identities=18% Similarity=0.268 Sum_probs=98.4
Q ss_pred hhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC----------ChHHHHHHHHHHHHHHHHhcc
Q 003187 522 VRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS----------DRKEYMEVAESAASFIRRHLY 591 (840)
Q Consensus 522 ~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~----------~~~~yle~A~~~~~fl~~~l~ 591 (840)
.|..|..|-+.+.|.+.||-.|--++.-=.+ ..-||.|..|- +..++|+.|-+.++|+.+.+.
T Consensus 111 vr~~~alp~l~~~~v~Gw~D~~gGg~pWR~q-------~~f~N~P~NgPa~I~~ar~~~~~~krL~~AMK~~dWi~~~Li 183 (377)
T COG4833 111 VRRRRALPKLTNQFVEGWVDEDGGGIPWRKQ-------DQFFNAPANGPAGIFLARYPDQYGKRLKRAMKMADWIDRTLI 183 (377)
T ss_pred eeccccchhHHHhhhhccccccCCccccccc-------ceeecCCCCCcceEEEeechHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567778889999999999877555432211 12344444331 224699999999999999999
Q ss_pred ccCCCeEEEe---ecCCCCCC-CCCcchHHHH--HHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcccccCCccccCCC-
Q 003187 592 DEQTHRLQHS---FRNGPSKA-PGFLDDYAFL--ISGLLDLYE-FGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG- 663 (840)
Q Consensus 592 d~~~G~l~~~---~~~g~~~~-~~~leDyA~~--i~aLl~LYe-aTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~- 663 (840)
|++ |..+.- -.+|.... ..+.+-+... +++-|+||+ .+.+.+|+..+.++.....++... -|-+-+...
T Consensus 184 d~D-GlV~DGi~~ledGt~lvr~~~tYcQGV~IGle~~L~Lr~~~a~~A~Y~a~~h~~vaav~~~mT~--~Gv~~~e~gg 260 (377)
T COG4833 184 DPD-GLVFDGIKALEDGTSLVRAQYTYCQGVVIGLETELALRTGPAARARYCARVHRLVAAVNEHMTP--LGVLRGEAGG 260 (377)
T ss_pred CCC-cchhhhhhhhccCchhheeeccccceeEeechhhhhhhcCchHHHHHHHHHHHHHHHHHHhcCc--cceeecCCCC
Confidence 964 533211 12344332 2344444433 458899999 788889999999999999988753 243333222
Q ss_pred CCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003187 664 EDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 700 (840)
Q Consensus 664 ~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~ 700 (840)
.|+.++ -++.+.-|..++.-+.+
T Consensus 261 GDgGLF--------------KGI~~RYlaDva~~lp~ 283 (377)
T COG4833 261 GDGGLF--------------KGITARYLADVATTLPG 283 (377)
T ss_pred Cccchh--------------hhHHHHHHHHHHHhcCC
Confidence 233332 14677777777777755
No 202
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.98 E-value=0.31 Score=44.71 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCCEEEEE-e---ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003187 129 EAFAEARKRDVPIFLSI-G---YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~-g---~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~ 204 (840)
+.+++..+++| |+|.. | ++||+||+...+ .|.+. +-.|. .+|.++.+++. +.+...+|....
T Consensus 3 ~~v~~~i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~-lL~~~------~i~~~--~~di~~~~~~~----~~l~~~tg~~tv 68 (97)
T TIGR00365 3 ERIKEQIKENP-VVLYMKGTPQFPQCGFSARAVQ-ILKAC------GVPFA--YVNVLEDPEIR----QGIKEYSNWPTI 68 (97)
T ss_pred HHHHHHhccCC-EEEEEccCCCCCCCchHHHHHH-HHHHc------CCCEE--EEECCCCHHHH----HHHHHHhCCCCC
Confidence 34555666655 55544 3 389999998753 33222 22344 45666555433 333445577777
Q ss_pred CcEEEECCCCceec
Q 003187 205 PLSVFLSPDLKPLM 218 (840)
Q Consensus 205 P~~vfl~p~g~~~~ 218 (840)
|.. |++ |+.|.
T Consensus 69 P~v-fi~--g~~iG 79 (97)
T TIGR00365 69 PQL-YVK--GEFVG 79 (97)
T ss_pred CEE-EEC--CEEEe
Confidence 876 444 45443
No 203
>PHA03050 glutaredoxin; Provisional
Probab=92.89 E-value=0.33 Score=45.59 Aligned_cols=70 Identities=10% Similarity=0.171 Sum_probs=38.4
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC-CccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee-~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
.++++ ++-|..+||+||+...+ .|++-.|. ...|..+.||..+ .++ ..+.+...+|....|..+ ++
T Consensus 10 i~~~~--V~vys~~~CPyC~~ak~-~L~~~~i~---~~~~~~i~i~~~~~~~~----~~~~l~~~tG~~tVP~If-I~-- 76 (108)
T PHA03050 10 LANNK--VTIFVKFTCPFCRNALD-ILNKFSFK---RGAYEIVDIKEFKPENE----LRDYFEQITGGRTVPRIF-FG-- 76 (108)
T ss_pred hccCC--EEEEECCCChHHHHHHH-HHHHcCCC---cCCcEEEECCCCCCCHH----HHHHHHHHcCCCCcCEEE-EC--
Confidence 34444 33489999999998653 23222110 0145555555321 222 334445567888999984 44
Q ss_pred Ccee
Q 003187 214 LKPL 217 (840)
Q Consensus 214 g~~~ 217 (840)
|+.|
T Consensus 77 g~~i 80 (108)
T PHA03050 77 KTSI 80 (108)
T ss_pred CEEE
Confidence 5554
No 204
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=92.81 E-value=0.61 Score=41.28 Aligned_cols=66 Identities=18% Similarity=0.101 Sum_probs=36.2
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC--CCCCcEEEECCCCceec
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPLM 218 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~--~G~P~~vfl~p~g~~~~ 218 (840)
++.++.+||++|+...+ .++.=.. .. .++-...+|.++.+.-.+.. ..+.|. ..+|+.++ +|+.+.
T Consensus 3 v~iy~~~~C~~C~~a~~-~L~~l~~--~~-~~i~~~~idi~~~~~~~~el----~~~~~~~~~~vP~ifi---~g~~ig 70 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKE-LAEKLSE--ER-DDFDYRYVDIHAEGISKADL----EKTVGKPVETVPQIFV---DQKHIG 70 (85)
T ss_pred EEEEeCCCChhHHHHHH-HHHhhcc--cc-cCCcEEEEECCCChHHHHHH----HHHHCCCCCcCCEEEE---CCEEEc
Confidence 56689999999999754 2222110 01 25556667776544222211 222343 67899653 566653
No 205
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=92.67 E-value=0.12 Score=49.49 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCEEEEEec-------cCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCcc---HHHHHHHH
Q 003187 128 EEAFAEARKRDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPD---VDKVYMTY 194 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~-------~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~pd---~~~~y~~~ 194 (840)
.++++...+.+++|||.|.+ +||+.|..-+. -|.+.++ ++.+.|.|.+..++. -+..|.+-
T Consensus 9 ~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep------~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 9 EKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEP------VVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHH------HHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred HHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHH------HHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 45555556788999999864 59999998763 3333333 355555555543332 22334221
Q ss_pred HHHhcCCCCCCcEEEECCCCc
Q 003187 195 VQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~ 215 (840)
-.....++||.+=+...++
T Consensus 83 --p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 83 --PDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp ---CC---SSSEEEECTSS-E
T ss_pred --ceeeeeecceEEEECCCCc
Confidence 0136779999998876644
No 206
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=92.58 E-value=0.24 Score=51.32 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=52.1
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCC-ccH--HHH-------H---------HH
Q 003187 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREER-PDV--DKV-------Y---------MT 193 (840)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~-pd~--~~~-------y---------~~ 193 (840)
.||+++|.|+. +||.+|..-.. .| .+.++.+.+ .+|.|-+|-... ... ... + ++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~-~l--~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEII-QF--SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHH-HH--HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 58999999985 88999987443 22 233333332 356666553321 000 000 0 11
Q ss_pred HHHHhcCCC----C--CCcEEEECCCCceeccccc-cCCCCCCCcccHHHHHHHHH
Q 003187 194 YVQALYGGG----G--WPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 194 ~~~~~~g~~----G--~P~~vfl~p~g~~~~~~tY-~p~~~~~~~~~f~~~L~~i~ 242 (840)
..+. +|+. | +|.++++||+|++.+...+ .+.. ....++|+.|.
T Consensus 112 ia~~-ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~-----r~~~e~l~~l~ 161 (199)
T PTZ00253 112 IARS-YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVG-----RNVEEVLRLLE 161 (199)
T ss_pred HHHH-cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCC-----CCHHHHHHHHH
Confidence 2222 2442 3 6899999999998875433 3321 24555555443
No 207
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=92.53 E-value=0.31 Score=56.28 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC-CCCCCcchHHHHHH
Q 003187 543 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-KAPGFLDDYAFLIS 621 (840)
Q Consensus 543 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~-~~~~~leDyA~~i~ 621 (840)
.++++++|+++.+| +..-+.+..++. ++-- |-+- ......+ .....-.+-.+++.
T Consensus 389 yll~~vra~~~s~D----------------~~Lw~~~~~m~~----~~gL---Gdig-~~~~~~~~~~~~~~~~sp~~L~ 444 (557)
T PF06917_consen 389 YLLPYVRAYRLSRD----------------PELWDLARTMAH----HFGL---GDIG-NAAGKEPRVNMQTDNASPYLLF 444 (557)
T ss_dssp HHHHHHHHHHHS------------------HHHHHHHHHHHH----HTT----EE-T-TBTTBS-EE-TT-----HHHHH
T ss_pred HhHHHHHHHHcCCC----------------HHHHHHHHHHHh----hcCc---cccc-CccccccccccCCCCCCHHHHH
Confidence 47799999999887 666677776663 2210 1110 0000111 12234456678999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccC
Q 003187 622 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 661 (840)
Q Consensus 622 aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 661 (840)
|+|+||++|++++|++.|.++.+.+.++-++ .|||-.
T Consensus 445 allEL~~atq~~~~l~lA~~~g~~l~~~~~~---~GlF~~ 481 (557)
T PF06917_consen 445 ALLELYQATQDARYLELADQVGENLFEQHFH---RGLFVA 481 (557)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHEE---TTEE-S
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcc---CceecC
Confidence 9999999999999999999999988877654 345544
No 208
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=92.34 E-value=0.74 Score=44.63 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=62.0
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
.+++|.|+|-||.+|=+.|..|++-. ..+++.+.+-.+..-||+++-|+..+.| ... -|.+|++==.+
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~mDeiL---~~~a~~v~~~a~IY~vDi~~Vpdfn~~y--------el~-dP~tvmFF~rn 84 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQMDEIL---YKIAEKVKNFAVIYLVDIDEVPDFNQMY--------ELY-DPCTVMFFFRN 84 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTTHCCHHHT--------TS--SSEEEEEEETT
T ss_pred ccCceEEEEEeCCCCCccHHHHHHHH---HHHHHHhhcceEEEEEEcccchhhhccc--------ccC-CCeEEEEEecC
Confidence 47899999999999999999998633 3456677655666679999999988776 333 78887765445
Q ss_pred ceecc--ccccCCC--C-CCCcccHHHHHHHHH
Q 003187 215 KPLMG--GTYFPPE--D-KYGRPGFKTILRKVK 242 (840)
Q Consensus 215 ~~~~~--~tY~p~~--~-~~~~~~f~~~L~~i~ 242 (840)
+.+.- ||.=-.+ . -..++.|+++++.|-
T Consensus 85 khm~vD~GtgnnnKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 85 KHMMVDFGTGNNNKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp EEEEEESSSSSSSSBCS--SCHHHHHHHHHHHH
T ss_pred eEEEEEecCCCccEEEEEcCcHHHHHHHHHHHH
Confidence 54432 2210000 0 012456777777664
No 209
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.06 E-value=0.38 Score=41.27 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=32.7
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
+-++.+||++|+...+ +|++ +.-...+|.++.++....+ +.++|....|..+|
T Consensus 4 ~ly~~~~C~~C~ka~~----------~L~~~gi~~~~~di~~~~~~~~el----~~~~g~~~vP~v~i 57 (73)
T cd03027 4 TIYSRLGCEDCTAVRL----------FLREKGLPYVEINIDIFPERKAEL----EERTGSSVVPQIFF 57 (73)
T ss_pred EEEecCCChhHHHHHH----------HHHHCCCceEEEECCCCHHHHHHH----HHHhCCCCcCEEEE
Confidence 4588899999999753 3333 2223345666666544333 34457778888754
No 210
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=92.02 E-value=0.53 Score=50.12 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=21.6
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhc
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVE 159 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~e 159 (840)
..++|..++.|+-..|++||+++++
T Consensus 104 ~~~~k~~I~vFtDp~CpyCkkl~~~ 128 (232)
T PRK10877 104 APQEKHVITVFTDITCGYCHKLHEQ 128 (232)
T ss_pred CCCCCEEEEEEECCCChHHHHHHHH
Confidence 4568889999999999999999854
No 211
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=91.70 E-value=9.6 Score=46.63 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcccCCCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCe
Q 003187 281 PQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 360 (840)
Q Consensus 281 ~~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GG 360 (840)
...+++++++.|... |...||++.. |.+..+..|--+.. |. ...+.. .+.++++.. =++.+.+|+
T Consensus 234 r~~a~~~~~~~i~~~-q~~~g~~~~~---~~~~~l~~lal~~~-----g~-~~~~~~----~~~l~~l~~-~~~~~~~g~ 298 (634)
T cd02892 234 RRKALRKAYEWILYR-DENTGYLGII---PPPKANNMLALWVL-----GY-PDSPAF----KRHLERIDD-FLWLGPEGM 298 (634)
T ss_pred HHHHHHHHHHHHHHH-hcCCCceeee---ehHHHHHHHHHHHc-----CC-CCCHHH----HHHHHHHHh-cEEEecCCc
Confidence 455677777777655 7789999884 34444433322221 10 112233 333444433 233334666
Q ss_pred EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCC
Q 003187 361 FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGG 421 (840)
Q Consensus 361 F~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~-~~~G 421 (840)
++- ..+ .--+||-|+.+.++.++... +.+....+++++||.+.-. ++.|
T Consensus 299 ~~~-~~~--------~s~~wDTala~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~g 348 (634)
T cd02892 299 KMC-QTN--------GSQVWDTALAVQALLEAGLA---PEFDPALKKALDWLLESQILDNPG 348 (634)
T ss_pred EEE-cCC--------CCchHHHHHHHHHHHHcCCC---ccchHHHHHHHHHHHHHHcCCCCC
Confidence 643 111 12388999999999997432 3677889999999987432 4445
No 212
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=91.60 E-value=0.71 Score=41.58 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=36.0
Q ss_pred CCCEEEEEe----ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 138 DVPIFLSIG----YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 138 ~KpI~l~~g----~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
++||+|... .+||+||+...+ .|++ .+-.|..+ |.++.+++ ++.+...+|....|.. |++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~-~L~~------~~i~y~~i--dv~~~~~~----~~~l~~~~g~~tvP~v-fi~-- 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQ-ILNQ------LGVDFGTF--DILEDEEV----RQGLKEYSNWPTFPQL-YVN-- 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHH-HHHH------cCCCeEEE--EcCCCHHH----HHHHHHHhCCCCCCEE-EEC--
Confidence 356666543 379999998653 2221 12234444 55544443 3444555688889986 554
Q ss_pred Ccee
Q 003187 214 LKPL 217 (840)
Q Consensus 214 g~~~ 217 (840)
|+.|
T Consensus 71 g~~i 74 (90)
T cd03028 71 GELV 74 (90)
T ss_pred CEEE
Confidence 5554
No 213
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=91.54 E-value=1.2 Score=48.37 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=51.5
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cC--eEEEEEcCCC-CccHHHH-----------H-------HH
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DW--FVSIKVDREE-RPDVDKV-----------Y-------MT 193 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~--FV~vkvD~ee-~pd~~~~-----------y-------~~ 193 (840)
.+|+|+|.|+ ++||+.|.. |--.|++ ..+.+. ++ .|.|-+|..+ .....+. | .+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~-El~~l~~--~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ 173 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPS-ELLGFSE--RLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISRE 173 (261)
T ss_pred CCCeEEEEEECCCCCCCCHH-HHHHHHH--HHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChH
Confidence 4788888887 899999998 3333431 222222 23 3344444310 0000000 0 12
Q ss_pred HHHHhcCCC-----CCCcEEEECCCCceeccccc-cCCCCCCCcccHHHHHHHHH
Q 003187 194 YVQALYGGG-----GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 194 ~~~~~~g~~-----G~P~~vfl~p~g~~~~~~tY-~p~~~~~~~~~f~~~L~~i~ 242 (840)
.+++ +|+. ..|.++++||+|++.+...| .+.. .+.-++|+.|.
T Consensus 174 iaka-yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~g-----r~v~eiLr~l~ 222 (261)
T PTZ00137 174 VSKS-FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLG-----RSVDETLRLFD 222 (261)
T ss_pred HHHH-cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCC-----CCHHHHHHHHH
Confidence 2222 2442 47999999999999887544 3322 25666665554
No 214
>PF13728 TraF: F plasmid transfer operon protein
Probab=91.43 E-value=0.74 Score=48.52 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCC--ccHHHHH--HHHHHHhcCCCC
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER--PDVDKVY--MTYVQALYGGGG 203 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~--pd~~~~y--~~~~~~~~g~~G 203 (840)
++++... ++-=|+.|+.+.|+.||.+. |-|..+-++ +|-.+-|+.|.. |.+.... ....+. .|+.-
T Consensus 113 ~~l~~la--~~~gL~~F~~~~C~~C~~~~------pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~-l~v~~ 183 (215)
T PF13728_consen 113 KALKQLA--QKYGLFFFYRSDCPYCQQQA------PILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKR-LGVKV 183 (215)
T ss_pred HHHHHHh--hCeEEEEEEcCCCchhHHHH------HHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHH-cCCCc
Confidence 3444444 55667889999999999986 344444444 455555555432 1110000 011122 28889
Q ss_pred CCcEEEECCCCcee
Q 003187 204 WPLSVFLSPDLKPL 217 (840)
Q Consensus 204 ~P~~vfl~p~g~~~ 217 (840)
+|++++++|+++.+
T Consensus 184 ~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 184 TPALFLVNPNTKKW 197 (215)
T ss_pred CCEEEEEECCCCeE
Confidence 99999999988544
No 215
>PRK13599 putative peroxiredoxin; Provisional
Probab=91.34 E-value=0.54 Score=49.52 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=25.7
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003187 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
..|.++|+||+|++.+... .|.. .| ..+-++|+.|..
T Consensus 118 ~~R~tfIID~dG~Ir~~~~-~p~~--~g-r~~~eilr~l~~ 154 (215)
T PRK13599 118 TVRAVFIVDDKGTIRLIMY-YPQE--VG-RNVDEILRALKA 154 (215)
T ss_pred eeeEEEEECCCCEEEEEEE-cCCC--CC-CCHHHHHHHHHH
Confidence 5799999999999987643 3422 12 367777776654
No 216
>PRK10638 glutaredoxin 3; Provisional
Probab=91.29 E-value=0.55 Score=41.40 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=35.4
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.-++.+||++|+.... .++. .+-.|.. +|+++.++....+ ...+|....|..++ +|+.+.+
T Consensus 5 ~ly~~~~Cp~C~~a~~-~L~~------~gi~y~~--~dv~~~~~~~~~l----~~~~g~~~vP~i~~---~g~~igG 65 (83)
T PRK10638 5 EIYTKATCPFCHRAKA-LLNS------KGVSFQE--IPIDGDAAKREEM----IKRSGRTTVPQIFI---DAQHIGG 65 (83)
T ss_pred EEEECCCChhHHHHHH-HHHH------cCCCcEE--EECCCCHHHHHHH----HHHhCCCCcCEEEE---CCEEEeC
Confidence 3578899999998643 2222 1223554 4555555443333 34458888997644 4666643
No 217
>PLN02171 endoglucanase
Probab=91.23 E-value=12 Score=45.74 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=64.4
Q ss_pred CCCCCCC---CCCCCChhHH--HHHH-HhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEec-----C
Q 003187 299 RFGGFGS---APKFPRPVEI--QMML-YHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV-----D 367 (840)
Q Consensus 299 ~~GGfg~---aPKFP~~~~l--~~Ll-~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsv-----D 367 (840)
.-|||.. --||=.|+.. ..|+ .+......-.....-+.+++.+.--+|-|.+ .++. .|+||. -| |
T Consensus 74 lsGGwyDAGD~vKf~~p~a~s~t~L~w~~~e~~~~~~~~g~~~~~Ldeikw~~Dyllk--~~~~-~~~~y~-qVgdg~~D 149 (629)
T PLN02171 74 LVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAAAGELGHAMDAVKWGTDYFIK--AHPE-PNVLYG-EVGDGDTD 149 (629)
T ss_pred CCCCceeCCCCceeccchHHHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHHHH--hccC-CCeEEE-EeCCCCcc
Confidence 4788844 4677665433 2332 3222111000011235778888888887776 3332 345552 33 2
Q ss_pred -CCCCCCCCcch---HH---------H-HHHHHHHHHHHHHccC--ChH----HHHHHHHHHHHHHH
Q 003187 368 -ERWHVPHFEKM---LY---------D-QGQLANVYLDAFSLTK--DVF----YSYICRDILDYLRR 414 (840)
Q Consensus 368 -~~W~vPHFEKM---LY---------D-NA~Ll~~ya~Ay~~tg--d~~----y~~~A~~t~~fl~r 414 (840)
.-|..|+-.++ +| | =+..+.+++.|+++.+ |+. +++.|++..+|..+
T Consensus 150 H~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~ 216 (629)
T PLN02171 150 HYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFRRSNPGYANELLTHAKQLFDFADK 216 (629)
T ss_pred ccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHh
Confidence 23777753321 22 2 4678889999999987 455 47788899999876
No 218
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=91.18 E-value=0.49 Score=51.66 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=48.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHH--HHH-HHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEG--VAK-LLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~e--Va~-~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
..+..|||.|+|+||..-+++.. +|+... +.+ +=+..-|.-+||.+...+|..+| .+.-+||.=
T Consensus 11 ~s~elvfv~FyAdWCrFSq~L~p-iF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky--------~I~KyPTlK 77 (375)
T KOG0912|consen 11 DSNELVFVNFYADWCRFSQMLKP-IFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKY--------HINKYPTLK 77 (375)
T ss_pred ccceEEeeeeehhhchHHHHHhH-HHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhh--------ccccCceee
Confidence 34778999999999999999865 665432 111 11236789999999888999888 677899874
No 219
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=91.05 E-value=0.58 Score=44.89 Aligned_cols=81 Identities=26% Similarity=0.383 Sum_probs=58.2
Q ss_pred hhhcccCCCccCccchHHHHHHH--HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEE-EEcCCCCccHH
Q 003187 112 YLLQHAHNPVDWFAWGEEAFAEA--RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVD 188 (840)
Q Consensus 112 YL~~ha~~~v~W~~~~~eAl~~A--k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~v-kvD~ee~pd~~ 188 (840)
||+.|-++ .| +..+| -.+.|.|.|-||-+|=+-|-.|+. .+ ..++..+. +|+.| -||+++-|+..
T Consensus 3 ~lLp~L~s--~~------~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~-~L--~~i~~~vs-nfa~IylvdideV~~~~ 70 (142)
T KOG3414|consen 3 YLLPTLHS--GW------EVDQAILSTEERLVVIRFGRDWDPTCMKMDE-LL--SSIAEDVS-NFAVIYLVDIDEVPDFV 70 (142)
T ss_pred eecccccc--HH------HHHHHHhcccceEEEEEecCCCCchHhhHHH-HH--HHHHHHHh-hceEEEEEecchhhhhh
Confidence 66666665 22 33333 467889999999999999999985 33 35566665 66555 57999999988
Q ss_pred HHHHHHHHHhcCCCCCCcEEEECC
Q 003187 189 KVYMTYVQALYGGGGWPLSVFLSP 212 (840)
Q Consensus 189 ~~y~~~~~~~~g~~G~P~~vfl~p 212 (840)
+.| +....|+++|+=-
T Consensus 71 ~~~--------~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 71 KMY--------ELYDPPTVMFFFN 86 (142)
T ss_pred hhh--------cccCCceEEEEEc
Confidence 766 6667888887643
No 220
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.88 E-value=0.87 Score=54.04 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=57.9
Q ss_pred hHHHHHHHHhcCCCE-EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI-~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
.++.+++.++-+||+ +.-|....|++|...-. .+ .-.+..|.+...-.+|..+.|++...| ++.++|
T Consensus 105 ~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~-~~---~~~a~~~p~i~~~~id~~~~~~~~~~~--------~v~~VP 172 (515)
T TIGR03140 105 DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQ-AL---NQMALLNPNISHTMIDGALFQDEVEAL--------GIQGVP 172 (515)
T ss_pred CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHH-HH---HHHHHhCCCceEEEEEchhCHHHHHhc--------CCcccC
Confidence 578888889889998 55589999999986433 22 223455666666668888999998887 788999
Q ss_pred cEEEECCCCceecc
Q 003187 206 LSVFLSPDLKPLMG 219 (840)
Q Consensus 206 ~~vfl~p~g~~~~~ 219 (840)
.+++ +|+.++.
T Consensus 173 ~~~i---~~~~~~~ 183 (515)
T TIGR03140 173 AVFL---NGEEFHN 183 (515)
T ss_pred EEEE---CCcEEEe
Confidence 9986 4455544
No 221
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=90.65 E-value=5.3 Score=48.66 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCC--C-CCCcch
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK--A-PGFLDD 615 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~-~~~g~~~--~-~~~leD 615 (840)
.++++.||..++ +.+.|++..+|+.+.... +|.+++. +-+|.+. . ...+|.
T Consensus 300 ~~~~a~Al~~~G-----------------------~~~~a~~~l~~l~~~q~~--~G~~~~~~~~dG~~~~~~~~~Q~D~ 354 (616)
T TIGR01577 300 ASYIATALDRAG-----------------------YHDRVDRFFRWAMQTQSR--DGSWQQRYYLNGRLAPLQWGLQIDE 354 (616)
T ss_pred HHHHHHHHHHCC-----------------------CHHHHHHHHHHHHHhhCc--CCCcceEEecCCCCCCCCCCccccc
Confidence 477788887775 346788889999887653 5666666 4566654 2 455667
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---ccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 003187 616 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF---LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 692 (840)
Q Consensus 616 yA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F---~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~Ll 692 (840)
++..+.++..++..|+|..+++.--...+.+.+.. +++ +. .. ++.. .++...+..+..++....+|.
T Consensus 355 ~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~--~l-~~---~~~~----lWEer~G~~~~t~a~~~aAL~ 424 (616)
T TIGR01577 355 TGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDP--ET-PL---PCRD----LWEEREGVFTYTASAVYGGLD 424 (616)
T ss_pred hhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccC--CC-CC---CCCc----cceecCCccCccHHHHHHHHH
Confidence 99999999999999999887655433333333322 322 11 11 1111 122223455677776666665
Q ss_pred ---HHHHHhCCCC-chHHHHHHHHHHHHHHH
Q 003187 693 ---RLASIVAGSK-SDYYRQNAEHSLAVFET 719 (840)
Q Consensus 693 ---rL~~lt~~~~-~~~y~~~A~~~l~~~~~ 719 (840)
+|+...|+.. ...|++.|+++-+.+..
T Consensus 425 ~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~ 455 (616)
T TIGR01577 425 AAAAVADKLGEKRLAQNWKKAAEFIKRAVEE 455 (616)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 4555555421 13455556655554433
No 222
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=89.99 E-value=56 Score=40.13 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=43.4
Q ss_pred CCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEe
Q 003187 358 GGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 358 ~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
.||+- |++...+-. -+-|-|..+.++..+ ....++.+....+++++||++ |++++|||-+
T Consensus 365 ~GGW~-f~~~~~~~p-----d~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~-~Qn~dGgw~a 424 (635)
T TIGR01507 365 PGGWA-FQFDNVYYP-----DVDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAG-MQSSNGGWGA 424 (635)
T ss_pred CCccC-CCCCCCCCC-----CchhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHH-hcCCCCCEec
Confidence 57766 666444322 234788888888776 334566788999999999997 8899999843
No 223
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=89.97 E-value=37 Score=37.93 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCC-CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK-APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 651 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~-~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~ 651 (840)
+..++.-+...+|+.++-.. +|.+.-+- +++.+ ..-+...--=+|..|...|++.++++||+.|.+-.+.+.++=.
T Consensus 241 ~~~~~dVK~sldym~~~rfp--sGNyP~s~-~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl 317 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFP--SGNYPSSE-GNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL 317 (403)
T ss_pred hhHHHhhhhHHHHHHHccCC--CCCCCccc-CCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 55778888889998876543 34443221 11111 0111111123577899999999999999999999998876522
Q ss_pred cccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003187 652 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEH 712 (840)
Q Consensus 652 D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~ 712 (840)
=+++-| .-++ -+||+ -.++.|+++|++ .+|..||.+
T Consensus 318 Lkkg~G-----------------ichG--vaGNa---YvFLsLyRLT~d---~kYlyRA~k 353 (403)
T KOG2787|consen 318 LKKGVG-----------------ICHG--VAGNA---YVFLSLYRLTGD---MKYLYRAKK 353 (403)
T ss_pred hhcCCc-----------------cccc--ccCch---hhhHhHHHHcCc---HHHHHHHHH
Confidence 222111 1111 25665 457788999986 889999973
No 224
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=89.91 E-value=1 Score=38.32 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=32.5
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC-CCCcEEEECCCCceec
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG-GWPLSVFLSPDLKPLM 218 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~-G~P~~vfl~p~g~~~~ 218 (840)
.-++.++|++|+...+ .++. .+-.|..+ |.++.++..+.+ ....|.. ++|.. |++ |+.+.
T Consensus 3 ~ly~~~~Cp~C~~ak~-~L~~------~~i~~~~i--~i~~~~~~~~~~----~~~~~~~~~vP~v-~i~--g~~ig 63 (75)
T cd03418 3 EIYTKPNCPYCVRAKA-LLDK------KGVDYEEI--DVDGDPALREEM----INRSGGRRTVPQI-FIG--DVHIG 63 (75)
T ss_pred EEEeCCCChHHHHHHH-HHHH------CCCcEEEE--ECCCCHHHHHHH----HHHhCCCCccCEE-EEC--CEEEe
Confidence 4588899999999653 2221 23345544 444444433222 2223555 88965 444 45553
No 225
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=89.81 E-value=0.57 Score=40.62 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=33.8
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
-++.+||++|+...+ .|+. .+-.|..+ |.++.|...+.+ +..+|..++|+.+ ++ |+.+
T Consensus 3 ly~~~~Cp~C~~a~~-~L~~------~~i~~~~~--di~~~~~~~~~~----~~~~g~~~vP~i~-i~--g~~i 60 (79)
T TIGR02181 3 IYTKPYCPYCTRAKA-LLSS------KGVTFTEI--RVDGDPALRDEM----MQRSGRRTVPQIF-IG--DVHV 60 (79)
T ss_pred EEecCCChhHHHHHH-HHHH------cCCCcEEE--EecCCHHHHHHH----HHHhCCCCcCEEE-EC--CEEE
Confidence 478899999999754 3322 22234444 445555443333 3345788999974 43 4544
No 226
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=89.81 E-value=0.86 Score=39.02 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=31.0
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
-++.++|++|+...+ .++ -.+-.|.. +|.++.|+....+ ..+ |..+.|..++
T Consensus 3 ly~~~~Cp~C~~ak~-~L~------~~~i~~~~--~di~~~~~~~~~~----~~~-g~~~vP~v~~ 54 (72)
T TIGR02194 3 VYSKNNCVQCKMTKK-ALE------EHGIAFEE--INIDEQPEAIDYV----KAQ-GFRQVPVIVA 54 (72)
T ss_pred EEeCCCCHHHHHHHH-HHH------HCCCceEE--EECCCCHHHHHHH----HHc-CCcccCEEEE
Confidence 478899999999754 222 12223433 4666556544333 222 7778999755
No 227
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=88.94 E-value=0.48 Score=41.25 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=34.6
Q ss_pred EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEE-EcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccc
Q 003187 145 IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 145 ~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vk-vD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~ 220 (840)
+.+++|+.|..+.+.. .++++.++ +.+. +|.++.+++ ..| |+.+.|+.++ ||+.++.|
T Consensus 5 v~~~~C~~C~~~~~~~---~~~~~~~~---i~~ei~~~~~~~~~-~~y--------gv~~vPalvI---ng~~~~~G 63 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLL---KEAAEELG---IEVEIIDIEDFEEI-EKY--------GVMSVPALVI---NGKVVFVG 63 (76)
T ss_dssp EECSSCTTHHHHHHHH---HHHHHHTT---EEEEEEETTTHHHH-HHT--------T-SSSSEEEE---TTEEEEES
T ss_pred EeCCCCCCcHHHHHHH---HHHHHhcC---CeEEEEEccCHHHH-HHc--------CCCCCCEEEE---CCEEEEEe
Confidence 3566799999887522 44444443 3333 244444444 444 8899999965 57877654
No 228
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=88.80 E-value=1.2 Score=39.69 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=33.8
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC--CCCCcEEEECCCCceec
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPLM 218 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~--~G~P~~vfl~p~g~~~~ 218 (840)
+-++.+||++|+.+.+ .++.-.+. ...+....+|.+....... .+...+|. ...|..+ + +|+.+.
T Consensus 3 ~vys~~~Cp~C~~ak~-~L~~~~~~---~~~i~~~~idi~~~~~~~~----~l~~~~g~~~~tVP~if-i--~g~~ig 69 (86)
T TIGR02183 3 VIFGRPGCPYCVRAKQ-LAEKLAIE---RADFEFRYIDIHAEGISKA----DLEKTVGKPVETVPQIF-V--DEKHVG 69 (86)
T ss_pred EEEeCCCCccHHHHHH-HHHHhCcc---cCCCcEEEEECCCCHHHHH----HHHHHhCCCCCCcCeEE-E--CCEEec
Confidence 4578999999999864 32221110 0134455566654321111 12233454 5789885 4 455553
No 229
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=88.79 E-value=34 Score=35.90 Aligned_cols=128 Identities=14% Similarity=0.015 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhcccCCCCCCCCCCCC--CChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCC
Q 003187 281 PQNALRLCAEQLSKSYDSRFGGFGSAPKF--PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 358 (840)
Q Consensus 281 ~~~~~~~~~~~l~~~~D~~~GGfg~aPKF--P~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~ 358 (840)
..+.+++++..|.+.- ...|||+..+.- |.+..-.+.+......+..+ ....+.+.+.++-+... ....
T Consensus 50 ~~~~~~~~~~~l~~~q-~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~---q~~d 120 (300)
T cd00688 50 ADENIEKGIQRLLSYQ-LSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-----AVDRIDLARALNWLLSL---QNED 120 (300)
T ss_pred chHHHHHHHHHHHhcc-CCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-----ccCHHHHHHHHHHHHHc---cCCC
Confidence 3456777888887655 458999887654 33322222222111111000 11223444445555442 3346
Q ss_pred CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 003187 359 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 423 (840)
Q Consensus 359 GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggf 423 (840)
|||..+.-... ..++-+.-....+..+.++..+..... ...+.++++||.+.. .++|||
T Consensus 121 G~~~~~~~~~~-~~~~~~~~~~~t~~al~aL~~~~~~~~----~~~~~~~~~~l~~~q-~~~g~~ 179 (300)
T cd00688 121 GGFREDGPGNH-RIGGDESDVRLTAYALIALALLGKLDP----DPLIEKALDYLLSCQ-NYDGGF 179 (300)
T ss_pred CCeeeecCCCC-cccCCCCcccHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHh-cCCCCc
Confidence 78774332211 012233444567778888877665443 467889999999854 668887
No 230
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=88.76 E-value=1.1 Score=46.03 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=44.5
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCC----CccHHHHHHHHHHHhcCCCCCCc
Q 003187 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE----RPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee----~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
..+.=.||+|+|.+.|+||+.|..|.. + .++.+... +.|+.|=+...+ .|+-.....++++. ..|++.
T Consensus 19 ~Ls~~~GKvvLVvf~AS~C~~~~q~~~--L--~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~---~~g~~F 91 (183)
T PRK10606 19 TLEKYAGNVLLIVNVASKCGLTPQYEQ--L--ENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRT---TWGVTF 91 (183)
T ss_pred eHHHhCCCEEEEEEEeCCCCCcHHHHH--H--HHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHH---ccCCCc
Confidence 344456899999999999999976542 1 23344343 368888776532 22222223344432 124444
Q ss_pred EEE--ECCCCc
Q 003187 207 SVF--LSPDLK 215 (840)
Q Consensus 207 ~vf--l~p~g~ 215 (840)
-++ ++-+|.
T Consensus 92 pv~~k~dvnG~ 102 (183)
T PRK10606 92 PMFSKIEVNGE 102 (183)
T ss_pred eeEEEEccCCC
Confidence 455 776665
No 231
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=88.70 E-value=1.5 Score=45.54 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=21.4
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
.|.++|+||+|++.+...| |... | .++-++|+.|.
T Consensus 117 ~r~~fiID~~G~I~~~~~~-~~~~--g-r~~~ell~~l~ 151 (203)
T cd03016 117 VRAVFIIDPDKKIRLILYY-PATT--G-RNFDEILRVVD 151 (203)
T ss_pred eeEEEEECCCCeEEEEEec-CCCC--C-CCHHHHHHHHH
Confidence 3569999999998876444 2111 1 24666665554
No 232
>PRK13191 putative peroxiredoxin; Provisional
Probab=88.50 E-value=2.9 Score=44.01 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=52.9
Q ss_pred cCCCEEE-EEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCc-c----HHHH------H-------HHHH
Q 003187 137 RDVPIFL-SIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERP-D----VDKV------Y-------MTYV 195 (840)
Q Consensus 137 e~KpI~l-~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p-d----~~~~------y-------~~~~ 195 (840)
.||+++| ++.++||..|...-. .|++- ..++-.+ .+|.|.+|....- . +.+. | .+..
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~-~l~~~-~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFY-SFAKK-YEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHH-HHHHH-HHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 4787665 789999999998543 23221 1122222 3455555432100 0 0000 0 1111
Q ss_pred HHhcCC-------CCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003187 196 QALYGG-------GGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 196 ~~~~g~-------~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
.. .|+ ...|.++|+||+|++.+...|-.+- |+ ++-++|+.|..
T Consensus 110 ~~-ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~---gr-~~~eilr~l~a 159 (215)
T PRK13191 110 KR-LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEI---GR-NIDEILRAIRA 159 (215)
T ss_pred HH-cCCcccccCCceeEEEEEECCCCEEEEEEecCCCC---CC-CHHHHHHHHHH
Confidence 22 232 2369999999999998764442222 22 67777776653
No 233
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=88.50 E-value=40 Score=38.49 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=68.8
Q ss_pred HHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCeEEEEec---CCCCCC---------CCCcchHH
Q 003187 316 QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HDHVGGGFHRYSV---DERWHV---------PHFEKMLY 380 (840)
Q Consensus 316 ~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi---~D~v~GGF~RYsv---D~~W~v---------PHFEKMLY 380 (840)
..+-.|...++| ..--++....+...|+.+..|.- +=+...||...-. -..|.. |.--|-+-
T Consensus 91 ~~l~~Y~~~t~D---~~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vE 167 (370)
T PF06202_consen 91 IALQEYYRWTGD---YSFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGAAVE 167 (370)
T ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCcchH
Confidence 344455555543 11123455567778999888643 2222467875332 356643 22224555
Q ss_pred HHHHHHHHHHHHHHcc---CC---hHHHHHHHHHHHHHHHhccCCCCceEe-eccCCc
Q 003187 381 DQGQLANVYLDAFSLT---KD---VFYSYICRDILDYLRRDMIGPGGEIFS-AEDADS 431 (840)
Q Consensus 381 DNA~Ll~~ya~Ay~~t---gd---~~y~~~A~~t~~fl~r~m~~~~Ggfys-a~DADs 431 (840)
-||+...++..+..+. ++ ..|++.|+++-+=..+.++++++|||. ++|.+.
T Consensus 168 Iqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~ 225 (370)
T PF06202_consen 168 IQALWYNALRFAAELAEKFGDELAARYREWAERLKESFEKRFWDEDRGYYADALDGDK 225 (370)
T ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence 5888777765544433 23 478899999998889999999877776 666543
No 234
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=87.91 E-value=13 Score=46.40 Aligned_cols=140 Identities=20% Similarity=0.295 Sum_probs=94.1
Q ss_pred hhhhcHHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCC
Q 003187 534 KVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG 611 (840)
Q Consensus 534 KiltsWNal~--I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~ 611 (840)
+-+-+.+|+. +.||..-+.++++ ......|.+....|...-.. ...+.
T Consensus 690 ~~iga~~G~~g~~yal~~I~~~~~~----------------~~l~~~~~~~i~~le~~v~~--------------~~~~d 739 (963)
T COG4403 690 INIGAFTGLSGYFYALWKIYSVTRD----------------NYLIQSAENSIRHLEILVQK--------------SKDPD 739 (963)
T ss_pred cccccccccchhhhhhHHHHHhccc----------------HHHHHHHHHHHHHHHHHHhh--------------ccCcc
Confidence 4455555655 6688888888876 45556666666533322111 12245
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHH
Q 003187 612 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 691 (840)
Q Consensus 612 ~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~L 691 (840)
+..+-|=++..|+.+|..|.++++++.|..+.+.+.+.....++ .+++.+- ---|+|-.+..|
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~---------s~~~l~g--------fshg~sgi~~tL 802 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDS---------SETVLLG--------FSHGASGIILTL 802 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccc---------ccceecc--------cccchHHHHHHH
Confidence 66667889999999999999999999999999998876543221 1112111 113566677889
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 003187 692 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 723 (840)
Q Consensus 692 lrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 723 (840)
+.|+.+||+ +.+.+.+++++..=......
T Consensus 803 ~~ly~~T~e---~~l~~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 803 LKLYEATGE---ESLLKKIKELLSYERMKFSD 831 (963)
T ss_pred HHHHHhcCc---HHHHHHHHHHHHHHHHHHHH
Confidence 999999996 78888888877665444443
No 235
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=87.71 E-value=2.1 Score=47.34 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=86.8
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCC--CCCCcchHH
Q 003187 541 GLVISSFARAS-KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDDYA 617 (840)
Q Consensus 541 al~I~ALa~A~-~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~--~~~~leDyA 617 (840)
+=++.+|++++ +.+++ +++.+.++++.+++.++....+++ +... +..... ..++.+.-+
T Consensus 170 ~Gi~~~L~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~WC~G~~ 231 (355)
T PF05147_consen 170 AGILYALLRLYKKGTKD----------------PEYLKLIEQILNFLLKHFNTDDGG-WPDN-RNNSNYKSRPSWCYGSP 231 (355)
T ss_dssp HHHHHHHCHCCHHT--H----------------HHHHHCHHHHHHHHHHC--TGCCT---SE-CTHHHHHC--SSSSSHH
T ss_pred HHHHHHHHHhhhcccCc----------------hhHHHHHHHHHHHHHHhcCcccCC-CCCC-CCccccccccccccCcH
Confidence 44678888888 57776 789999999999999988653333 3221 111100 356667777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHH
Q 003187 618 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 697 (840)
Q Consensus 618 ~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~l 697 (840)
=++.+++.+++..+++.+.+.++++.+.+.+.-. +.. +...==|.+=.+..|..++..
T Consensus 232 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------------~~~lCHG~aG~~~~l~~~~~~ 289 (355)
T PF05147_consen 232 GILLALLKAYKILDDEEYDEEAEQALESILQKGL------FLN----------------NPSLCHGTAGILEILLDLYKY 289 (355)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T------CTT----------------SS-STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc------cCC----------------CCceeCchHHhHHHHHHHHHH
Confidence 7888999999999999999999988887765310 010 112223566677788999999
Q ss_pred hCCCCchHHHHHHHHHHHHH
Q 003187 698 VAGSKSDYYRQNAEHSLAVF 717 (840)
Q Consensus 698 t~~~~~~~y~~~A~~~l~~~ 717 (840)
+++ +.|.+.+++++..+
T Consensus 290 ~~~---~~~~~~~~~~~~~~ 306 (355)
T PF05147_consen 290 TGD---EEYKELANKLIQKL 306 (355)
T ss_dssp H-----HCCHHHHHHHHHHH
T ss_pred cCC---HHHHHHHHHHHHHH
Confidence 986 66888888775554
No 236
>PLN02993 lupeol synthase
Probab=87.28 E-value=5.3 Score=49.59 Aligned_cols=83 Identities=11% Similarity=0.176 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCeEEEEecCC--CCC--CC---CCcchHHH------HHHHHHHHHHHHHccC---Ch
Q 003187 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE--RWH--VP---HFEKMLYD------QGQLANVYLDAFSLTK---DV 399 (840)
Q Consensus 336 ~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~--~W~--vP---HFEKMLYD------NA~Ll~~ya~Ay~~tg---d~ 399 (840)
+.+.-+...|-.|.. -+|||.-|-.|+ .|+ +| ||+..+.| -+..|.++....+... .+
T Consensus 513 ~~l~~av~wlL~mQn------~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ 586 (763)
T PLN02993 513 EQLYDSVNLLLSLQS------ENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTK 586 (763)
T ss_pred HHHHHHHHHHHhhcc------CCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhh
Confidence 455555566666766 479999999766 775 44 45555555 3445555543322111 13
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceEe
Q 003187 400 FYSYICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 400 ~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
+....++++++||++ .+.++|++|.
T Consensus 587 ei~~~i~rAv~yL~~-~Q~~DGSW~G 611 (763)
T PLN02993 587 EIIKSIEKAVQFIES-KQTPDGSWYG 611 (763)
T ss_pred hHHHHHHHHHHHHHH-hcCCCCCccc
Confidence 345688999999987 5788998884
No 237
>PRK10329 glutaredoxin-like protein; Provisional
Probab=87.16 E-value=1.7 Score=38.54 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=32.3
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
.-++.+||++|+...+ .| .+ +.-.-.+|.++.|+....+ +. .|....|+.++
T Consensus 4 ~lYt~~~Cp~C~~ak~-~L---------~~~gI~~~~idi~~~~~~~~~~----~~-~g~~~vPvv~i 56 (81)
T PRK10329 4 TIYTRNDCVQCHATKR-AM---------ESRGFDFEMINVDRVPEAAETL----RA-QGFRQLPVVIA 56 (81)
T ss_pred EEEeCCCCHhHHHHHH-HH---------HHCCCceEEEECCCCHHHHHHH----HH-cCCCCcCEEEE
Confidence 3478899999998753 33 33 3333345666666543322 23 37889999976
No 238
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=87.07 E-value=5.9 Score=43.89 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEe----ecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRLQHS----FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 648 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l~~~----~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~ 648 (840)
.+.+++-+-++.-|++|-+-|+. |-|. |.+. |..+ .+++.-.=||.+|||+.||+.|++|.+.+.+
T Consensus 324 k~aie~heml~qvikkh~flpea--ft~df~vhwaeh-pirp-------efaestyflykat~dp~yl~v~k~iidnink 393 (587)
T KOG2430|consen 324 KEAIEMHEMLFQVIKKHKFLPEA--FTHDFQVHWAEH-PIRP-------EFAESTYFLYKATGDPHYLEVAKQIIDNINK 393 (587)
T ss_pred HHHHHHHHHHHHHHHHcccChHh--hcccceeecccC-CCCh-------hhhhhheeeecccCCchHHHHHHHHHHHHhh
Confidence 67888888888888887665542 3222 2221 1112 2345556689999999999999999998865
Q ss_pred Hc
Q 003187 649 LF 650 (840)
Q Consensus 649 ~F 650 (840)
..
T Consensus 394 ya 395 (587)
T KOG2430|consen 394 YA 395 (587)
T ss_pred he
Confidence 43
No 239
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=86.57 E-value=13 Score=44.07 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=76.6
Q ss_pred CcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC------
Q 003187 531 LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN------ 604 (840)
Q Consensus 531 ~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~------ 604 (840)
-....+.+|....|..+-+.|+.+||... ..++....++.++++..+..+...+...+.+.|
T Consensus 197 ~~~~~~~~w~l~~i~~~~~~y~~tGD~~~------------l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DW~~~~~ 264 (509)
T PF05592_consen 197 GGGFGIPDWSLAWIIIPWDYYLYTGDREF------------LEEYYPAMKRYLDYLERRVDDGLDGLPGWGFGDWLAPGN 264 (509)
T ss_dssp SSGGGBHHHHHHHHHHHHHHHHHHT-HHH------------HHHHHHHHHHHHHHHHTTB-TSSB-CCSB--S-SS----
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHHhCCccccCCCCCceeecCCccC
Confidence 46778889999999999999999998422 256778888889998876644000111111112
Q ss_pred -CCCCCCCCcch---HHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcccccCCcc
Q 003187 605 -GPSKAPGFLDD---YAFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGY 658 (840)
Q Consensus 605 -g~~~~~~~leD---yA~~i~aLl~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggy 658 (840)
+.......+-. |..++..+.++.++.|++ .|.++|.+|-+.+.++|||++.|.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~~~g~~ 326 (509)
T PF05592_consen 265 DGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDPEKGGY 326 (509)
T ss_dssp TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEETTTTEE
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCcccCcc
Confidence 11112222223 455666688888899985 7999999999999999999887744
No 240
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=86.37 E-value=2 Score=36.55 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=33.2
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
+-|+.+||++|+...+ .++ ..+-.|.. +|.++.++. . .++..+|...+|.. |++ |+.+
T Consensus 4 ~lys~~~Cp~C~~ak~-~L~------~~~i~~~~--~~v~~~~~~-~----~~~~~~g~~~vP~i-fi~--g~~i 61 (72)
T cd03029 4 SLFTKPGCPFCARAKA-ALQ------ENGISYEE--IPLGKDITG-R----SLRAVTGAMTVPQV-FID--GELI 61 (72)
T ss_pred EEEECCCCHHHHHHHH-HHH------HcCCCcEE--EECCCChhH-H----HHHHHhCCCCcCeE-EEC--CEEE
Confidence 4478899999999742 222 12224444 455544432 1 22344588889986 555 4454
No 241
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=86.28 E-value=0.62 Score=47.96 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccC
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFE 162 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~ 162 (840)
.++...+.++|+.++.|+-..|++|+.++.+..+
T Consensus 68 ~~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 68 DAIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred cCeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 3455555678999999999999999999976553
No 242
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=86.11 E-value=2.3 Score=46.05 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCC--ccHHHHH--HHHHHHhcCCCC
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER--PDVDKVY--MTYVQALYGGGG 203 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~--pd~~~~y--~~~~~~~~g~~G 203 (840)
++++...+ +-=|+.|+.+.|+.||.|. |-|..+-++ +|-.+-|+.+.. |.+...- ...++.+ |+.-
T Consensus 143 ~~i~~la~--~~gL~fFy~~~C~~C~~~a------pil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~ 213 (256)
T TIGR02739 143 KAIQQLSQ--SYGLFFFYRGKSPISQKMA------PVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKY 213 (256)
T ss_pred HHHHHHHh--ceeEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCcc
Confidence 34444443 4567779999999999986 455555444 344444444432 3311100 0112233 7778
Q ss_pred CCcEEEECCCCcee
Q 003187 204 WPLSVFLSPDLKPL 217 (840)
Q Consensus 204 ~P~~vfl~p~g~~~ 217 (840)
+|++++++|+.+.+
T Consensus 214 ~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 214 FPALYLVNPKSQKM 227 (256)
T ss_pred CceEEEEECCCCcE
Confidence 99999999995543
No 243
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=85.25 E-value=1 Score=49.39 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=35.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceE
Q 003187 385 LANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (840)
Q Consensus 385 Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (840)
-+..++++|+.++++.|++.+.++++||+. |+.|+||+-
T Consensus 49 e~~fLa~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWP 87 (290)
T TIGR02474 49 EIRYLAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWP 87 (290)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcC
Confidence 456678899999999999999999999997 899999984
No 244
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=2.4 Score=37.49 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=31.7
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
+-++-++|+||+...+ +|++ .|..|.++..+. ...+ ..++...|+...|..++
T Consensus 4 ~iyt~~~CPyC~~ak~----------~L~~~g~~~~~i~~~~~~~-~~~~---~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 4 TIYTKPGCPYCKRAKR----------LLDRKGVDYEEIDVDDDEP-EEAR---EMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEECCCCchHHHHHH----------HHHHcCCCcEEEEecCCcH-HHHH---HHHHHhCCCCCcCEEEE
Confidence 3478899999998753 4444 355555544432 1122 23344457889998765
No 245
>PLN03012 Camelliol C synthase
Probab=84.75 E-value=86 Score=39.27 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=37.2
Q ss_pred CeEEEEec-CCCCCCCCCcchHHHHHHHHHHHHHHH----HccCChHHHHHHHHHHHHHHHhccCCCCceEe
Q 003187 359 GGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAF----SLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 359 GGF~RYsv-D~~W~vPHFEKMLYDNA~Ll~~ya~Ay----~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
||+. +|+ |..|.+.. |-|..+.+.+-.. .+.+++...+...++++||+. |++++|||.+
T Consensus 471 GgW~-Fs~~~~gyp~sD------~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGGwaa 534 (759)
T PLN03012 471 GAWT-FSDRDHGWQASD------CTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLS-LQSKNGGMTA 534 (759)
T ss_pred Cccc-ccCCCCCCCCCC------ccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh-ccCCCCCEee
Confidence 6766 554 66776653 2444333211111 223455667899999999997 9999999865
No 246
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=84.65 E-value=14 Score=42.21 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccccCC--CeEEEeecC---CCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003187 580 ESAASFIRRHLYDEQT--HRLQHSFRN---GPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 651 (840)
Q Consensus 580 ~~~~~fl~~~l~d~~~--G~l~~~~~~---g~~---~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~ 651 (840)
.++..|.+.|+...+. +.+.+.+.. |.. +...=.|.=-+++.||+...+..+++.|++.|+.|++.+.++-.
T Consensus 74 d~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev 153 (376)
T PRK11097 74 DKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEV 153 (376)
T ss_pred HHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcc
Confidence 4677888888876443 445555522 321 22233444578999999999999999999999999999998765
Q ss_pred cccCC-ccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003187 652 DREGG-GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 719 (840)
Q Consensus 652 D~~~G-gyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~ 719 (840)
.+..| +....+.+.. . .....-..-||- .+-..+-.++.++++ ..|.+.++..++.+..
T Consensus 154 ~~~~g~g~~LlPG~~g---F-~~~~~~~~NPSY--~~p~~~~~fa~~~~~---~~W~~l~~~~~~lL~~ 213 (376)
T PRK11097 154 VTVPGLGSMLLPGPVG---F-ADDGSWRLNPSY--LPPQLLRRFARFLPG---GPWAALAATNARLLLE 213 (376)
T ss_pred cccCCCceeecccccc---c-cCCCCCeECccc--ccHHHHHHHHHhcCC---chHHHHHHHHHHHHHH
Confidence 54444 3433332110 0 000000012332 355566677888875 5688888777776554
No 247
>PRK13189 peroxiredoxin; Provisional
Probab=84.25 E-value=2.7 Score=44.42 Aligned_cols=36 Identities=22% Similarity=0.091 Sum_probs=22.9
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
..|.++|+||+|++.+...|-.+. | ..+-++|+.|.
T Consensus 125 ~~r~tfIID~~G~Ir~~~~~~~~~---g-r~~~eilr~l~ 160 (222)
T PRK13189 125 TVRAVFIIDPKGIIRAILYYPQEV---G-RNMDEILRLVK 160 (222)
T ss_pred ceeEEEEECCCCeEEEEEecCCCC---C-CCHHHHHHHHH
Confidence 579999999999987654331111 1 24666665554
No 248
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=84.18 E-value=1.1e+02 Score=37.35 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCh----------------hHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHH
Q 003187 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPRP----------------VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQC 347 (840)
Q Consensus 284 ~~~~~~~~l~~~~D~~~GGfg~aPKFP~~----------------~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~ 347 (840)
.....+--|+...|+.+|++=-+|-+|.. ....-|+.. | ..+.+..-|+-
T Consensus 257 ~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~-------G-------~~~~a~~~l~~ 322 (616)
T TIGR01577 257 LYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRA-------G-------YHDRVDRFFRW 322 (616)
T ss_pred HHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHC-------C-------CHHHHHHHHHH
Confidence 44555455677778888886666665521 011111111 1 12333444555
Q ss_pred HHhCCCcccCCCeEEEEecCCCCCC-CCCcchHHHHHHHHHHHHHHHHccCChHH----HHHHHHHHHHHHHh
Q 003187 348 MAKGGIHDHVGGGFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFY----SYICRDILDYLRRD 415 (840)
Q Consensus 348 Ma~GGi~D~v~GGF~RYsvD~~W~v-PHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y----~~~A~~t~~fl~r~ 415 (840)
|.+ ....-|+..++|.+|..... .| ..-+-..|..+++....++.++|..+ ...++.+++|+.+.
T Consensus 323 l~~--~q~~~G~~~~~~~~dG~~~~~~~-~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~ 392 (616)
T TIGR01577 323 AMQ--TQSRDGSWQQRYYLNGRLAPLQW-GLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILF 392 (616)
T ss_pred HHH--hhCcCCCcceEEecCCCCCCCCC-CccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh
Confidence 555 12223344677778765432 21 23333377888888888899998654 45678999999884
No 249
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=83.93 E-value=6.7 Score=44.79 Aligned_cols=122 Identities=15% Similarity=0.146 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCc
Q 003187 578 VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG 657 (840)
Q Consensus 578 ~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Gg 657 (840)
..+++-+|+.+++.-..++ . .-+.|--.=++-|||..|..+|+.-||++|.+|.+.+..-|-.+..--
T Consensus 151 e~~ea~~Wv~~~L~f~~~~---------~---VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IP 218 (546)
T KOG2431|consen 151 EFEEAREWVEKKLHFEKDR---------D---VNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIP 218 (546)
T ss_pred HHHHHHHHHHhhccccccc---------c---eehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCC
Confidence 3445666777766321111 1 122344466788999999999999999999999999999995443223
Q ss_pred cccCCCCCCccccccccCCCCCCCChHHHHH---HHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003187 658 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV---INLVRLASIVAGSKSDYYRQNAEHSLAVFET 719 (840)
Q Consensus 658 yf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a---~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~ 719 (840)
|-+..-.. .....++-.. -|..|... ..+-.|+++||+ +.|.+.|+++.+.+..
T Consensus 219 ysdVnL~~-~~A~~p~~~~----~SStaEvttiQlEfr~Ls~ltgd---~kY~~~a~kv~ehih~ 275 (546)
T KOG2431|consen 219 YSDVNLGT-GTAHPPRWTG----DSSTAEVTTIQLEFRYLSRLTGD---PKYEELAEKVTEHIHG 275 (546)
T ss_pred cceeecCC-CcccCCCCCC----ccchhhheeeeeeHHHHHhhcCC---chHHHHHHHHHHHHhc
Confidence 33321111 1111111100 12222211 125579999996 7899999988877654
No 250
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=83.86 E-value=45 Score=36.90 Aligned_cols=114 Identities=13% Similarity=0.057 Sum_probs=69.0
Q ss_pred HHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeE
Q 003187 519 LFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRL 598 (840)
Q Consensus 519 L~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l 598 (840)
+......+...-+|+. -..--|.-|+++++..++ +.|.+++.++.+||++..+. +|++
T Consensus 29 ~~~~~~~~~~~TiDN~----aT~~e~~fLa~~y~~t~d----------------~~y~~A~~rgld~LL~aQyp--nGGW 86 (290)
T TIGR02474 29 VKNGGGGNESGTIDNG----ATVTEIRYLAQVYQQEKN----------------AKYRDAARKGIEYLLKAQYP--NGGW 86 (290)
T ss_pred hccccCCCCcccccCc----cHHHHHHHHHHHHHhcCc----------------hhHHHHHHHHHHHHHhhhCC--CCCc
Confidence 3333344667788877 222337788999998887 78999999999999988775 5776
Q ss_pred EEeecC-CCCCCCCCcchHH--HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHccccc
Q 003187 599 QHSFRN-GPSKAPGFLDDYA--FLISGLLDLYEFGS-----GTKWLVWAIELQNTQDELFLDRE 654 (840)
Q Consensus 599 ~~~~~~-g~~~~~~~leDyA--~~i~aLl~LYeaTg-----d~~yL~~A~~L~~~~~~~F~D~~ 654 (840)
-..+.. +.-...-+.+|.+ .++..|.++++..+ +...++++..-.+..++.+...+
T Consensus 87 PQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ 150 (290)
T TIGR02474 87 PQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQ 150 (290)
T ss_pred CcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 554422 1111223445554 56777777776433 22333444444444444444433
No 251
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=83.83 E-value=32 Score=38.20 Aligned_cols=156 Identities=12% Similarity=0.014 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc------------cCCCeEEEeecCCCCC
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD------------EQTHRLQHSFRNGPSK 608 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d------------~~~G~l~~~~~~g~~~ 608 (840)
++++.+|..++.. +++-+..+++.+||.++... ..+|++-.....+
T Consensus 29 a~~~~al~~~g~~-------------------~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~--- 86 (348)
T cd02889 29 ALALQALLEAGLA-------------------PEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQ--- 86 (348)
T ss_pred HHHHHHHHHcCCC-------------------CccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCC---
Confidence 6777777665421 34667888999999987631 1123222111110
Q ss_pred CCCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccccCCccccCCC-CCCccc-----cccccCCCCCC
Q 003187 609 APGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDREGGGYFNTTG-EDPSVL-----LRVKEDHDGAE 680 (840)
Q Consensus 609 ~~~~leDyA~~i~aLl~LYeaTg--d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~-~~~~l~-----~R~k~~~D~a~ 680 (840)
.....++-++++.+|+.+.+.+. +..+.+...+..+.+.... .+ .|+|..... .....+ .-.....|...
T Consensus 87 ~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q-~~-dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (348)
T cd02889 87 GYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQ-NS-NGGFAAFEPDNTYKYLELIPEVDGDIMIDPPY 164 (348)
T ss_pred CCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhc-cC-CCCEeeecCCccHHHHhcCchhhcCCccCCCC
Confidence 01224588999999999988863 4566666777777777653 23 466643211 110000 00111223344
Q ss_pred CChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003187 681 PSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 681 PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i 721 (840)
|+..+..+..|..+.....+. ..++.+.+++.++.+....
T Consensus 165 ~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~a~~~L~~~q 204 (348)
T cd02889 165 VECTGSVLEALGLFGKLYPEH-RREIDPAIRRAVKYLEREQ 204 (348)
T ss_pred cchHHHHHHHHHHhhhcCCch-HHHHHHHHHHHHHHHHHhC
Confidence 555666677777666543211 1235556666666655433
No 252
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=83.57 E-value=2.9 Score=45.14 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-C--eEEEEEcCCCCccHHHHH--HHHHHHhcCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-W--FVSIKVDREERPDVDKVY--MTYVQALYGGG 202 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~--FV~vkvD~ee~pd~~~~y--~~~~~~~~g~~ 202 (840)
+++++...++ -=|+.|+.+.|++||.|. |-|..+-++ + .++|.+|---.|.+...- ....+. .|+.
T Consensus 135 ~~~i~~la~~--~GL~fFy~s~Cp~C~~~a------Pil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~-l~v~ 205 (248)
T PRK13703 135 RQAIAKLAEH--YGLMFFYRGQDPIDGQLA------QVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQR-LGVK 205 (248)
T ss_pred HHHHHHHHhc--ceEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHh-cCCc
Confidence 3455555544 556669999999999987 455555554 3 445555642222211000 001122 2777
Q ss_pred CCCcEEEECCCCcee
Q 003187 203 GWPLSVFLSPDLKPL 217 (840)
Q Consensus 203 G~P~~vfl~p~g~~~ 217 (840)
-+|++++++|+.+.+
T Consensus 206 ~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 206 YFPALMLVDPKSGSV 220 (248)
T ss_pred ccceEEEEECCCCcE
Confidence 899999999986443
No 253
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.31 E-value=0.49 Score=49.69 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=52.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl 210 (840)
.+|++++.|++.||..|+.|+. +|. .+++.. ++...+|++.++.|++...+ .+.+.|+.++.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~-v~~--~~~~~~-~~~~~~k~~a~~~~eis~~~--------~v~~vp~~~~~ 77 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQ-VFD--HLAEYF-KNAQFLKLEAEEFPEISNLI--------AVEAVPYFVFF 77 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHH-HHH--HHHHhh-hhheeeeehhhhhhHHHHHH--------HHhcCceeeee
Confidence 6899999999999999999975 553 455666 78999999999999998777 34588999887
No 254
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=82.79 E-value=31 Score=39.31 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-----
Q 003187 577 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL----- 651 (840)
Q Consensus 577 e~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~----- 651 (840)
+.|+++...+.+... .|.+.+....|....-+..|---+++.++-++++.|+|..+++......+.+.+.+.
T Consensus 50 ~~a~~~L~~~~~~~~---~G~ipn~~~~~~~~~Y~s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~ 126 (370)
T PF06202_consen 50 EEARNILATFAGTQR---HGLIPNELRDGEEPRYNSVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDF 126 (370)
T ss_pred HHHHHHHHHHHHhhh---cCcccCcccCCCCCCCCCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 455555555554443 577877776665544456677789999999999999999999777665555554432
Q ss_pred ----cccCCccccCCC-------CCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHH
Q 003187 652 ----DREGGGYFNTTG-------EDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVA---GSKSDYYRQNAEHSLAVF 717 (840)
Q Consensus 652 ----D~~~Ggyf~t~~-------~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~---~~~~~~y~~~A~~~l~~~ 717 (840)
|+++| +..... .|...-.++...-+++.-.-|+.+..+|..++.+.. ++...+|++.|+++-+.|
T Consensus 127 ~~~~d~~~g-l~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F 205 (370)
T PF06202_consen 127 GIRVDPEDG-LIYSGNGLNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDELAARYREWAERLKESF 205 (370)
T ss_pred ccccccCCC-eeecCCCCCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Confidence 22222 222211 010000000111112222445556666665555543 222357888888888888
Q ss_pred HHHH
Q 003187 718 ETRL 721 (840)
Q Consensus 718 ~~~i 721 (840)
....
T Consensus 206 ~~~F 209 (370)
T PF06202_consen 206 EKRF 209 (370)
T ss_pred HHHH
Confidence 7655
No 255
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=82.78 E-value=27 Score=42.24 Aligned_cols=112 Identities=10% Similarity=0.009 Sum_probs=70.3
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh-----ccccCCCeEEE----eecCC--
Q 003187 537 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH-----LYDEQTHRLQH----SFRNG-- 605 (840)
Q Consensus 537 tsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~-----l~d~~~G~l~~----~~~~g-- 605 (840)
.+-.-+.|.++.+.++.++|... ..++...++++.+...+- ..| .+|.++. +|.|.
T Consensus 347 vDAtLWfi~al~~Y~~~tgD~~~------------l~~l~p~l~~ii~~y~~G~~~~i~~d-~dGLi~~g~~lTWMDa~~ 413 (575)
T TIGR01561 347 VDASLWAIHAIDKTFAYSQDFLF------------IRDVVDKVLDIIDNYCAGNDFAIGMD-NDLIFHKGAPLTWMDAKV 413 (575)
T ss_pred chHHHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHhcCCCcEEEEC-CCccEeCCCCCCCCCCCC
Confidence 44556789999999999987311 134445555555443321 123 2343332 25553
Q ss_pred --CCCC---CCCcchHHHHHHHHHH---HHHHcCC--HHHHHHHHHHHHHHHHHcccccCCccccC
Q 003187 606 --PSKA---PGFLDDYAFLISGLLD---LYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNT 661 (840)
Q Consensus 606 --~~~~---~~~leDyA~~i~aLl~---LYeaTgd--~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 661 (840)
.+.. -+-.|-+|..-.||.. +.+..|+ ..|.++|+++.+.+.++||+++.|.+|+.
T Consensus 414 g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~a~~y~~~A~~lk~~F~~~FW~~~~g~l~D~ 479 (575)
T TIGR01561 414 DERAVTPRAGAACEINALWYNALKTAEFLGNELGEDAESLEEKAAGVAKNFAEKFINPDGNCLFDL 479 (575)
T ss_pred CCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCCCeeEEE
Confidence 1212 2577888887777665 5555665 46889999999999999999876666664
No 256
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=81.95 E-value=2.2 Score=49.37 Aligned_cols=63 Identities=6% Similarity=0.082 Sum_probs=36.3
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEE-EEEcCCCCccHHHHHHHH----HHHhcCCCCCCcEEEECCCCce
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVDKVYMTY----VQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~-vkvD~ee~pd~~~~y~~~----~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
++-++.+||+||+... ++|+++=|+ ..+|+++.++....+... +...+|....|+.+| +|+.
T Consensus 4 V~vys~~~Cp~C~~aK----------~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi---~~~~ 70 (410)
T PRK12759 4 VRIYTKTNCPFCDLAK----------SWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV---GDVH 70 (410)
T ss_pred EEEEeCCCCHHHHHHH----------HHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE---CCEE
Confidence 3458899999999875 355553222 235666666544322211 112357778899866 4554
Q ss_pred e
Q 003187 217 L 217 (840)
Q Consensus 217 ~ 217 (840)
+
T Consensus 71 i 71 (410)
T PRK12759 71 I 71 (410)
T ss_pred E
Confidence 4
No 257
>PLN02993 lupeol synthase
Probab=81.66 E-value=1.1e+02 Score=38.27 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=39.1
Q ss_pred CCeEEEEec-CCCCCCCCCcchHHHHHHHHHHHHHHHHc----cCChHHHHHHHHHHHHHHHhccCCCCceEe
Q 003187 358 GGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSL----TKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 358 ~GGF~RYsv-D~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~----tgd~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
-||+. +|+ |..|.+.. |-|..+.+..-..+. .+++...+...++++||+. |++++|||.+
T Consensus 470 ~GgW~-Fs~~~~gyp~sD------dTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGG~aa 534 (763)
T PLN02993 470 KGAWT-LSDRDHGWQVSD------CTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLS-LQSENGGVTA 534 (763)
T ss_pred CCcCc-CccCCCCCCcCC------chHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHh-hccCCCCEEe
Confidence 37766 554 66666653 355555532222222 2356677899999999997 9999999865
No 258
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=81.06 E-value=0.86 Score=53.68 Aligned_cols=71 Identities=20% Similarity=0.401 Sum_probs=49.5
Q ss_pred CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEE---EcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK---VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 139 KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vk---vD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
|--+|.|+++||+.|+.... +|+. +++-+...-=.|+ ||--+ ..-++.|... ++.++|+.-++-|+-+
T Consensus 58 ~~~lVEFy~swCGhCr~FAP-tfk~--~A~dl~~W~~vv~vaaVdCA~-----~~N~~lCRef-~V~~~Ptlryf~~~~~ 128 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAP-TFKK--FAKDLEKWRPVVRVAAVDCAD-----EENVKLCREF-SVSGYPTLRYFPPDSQ 128 (606)
T ss_pred hhHHHHHHHhhhhhhhhcch-HHHH--HHHHHhcccceeEEEEeeccc-----hhhhhhHhhc-CCCCCceeeecCCccc
Confidence 56789999999999999986 6654 7777776443344 45421 1223344443 8999999999999855
Q ss_pred eec
Q 003187 216 PLM 218 (840)
Q Consensus 216 ~~~ 218 (840)
...
T Consensus 129 ~~~ 131 (606)
T KOG1731|consen 129 NKT 131 (606)
T ss_pred cCc
Confidence 543
No 259
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=80.72 E-value=93 Score=34.05 Aligned_cols=69 Identities=20% Similarity=0.362 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCC
Q 003187 579 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD--YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 656 (840)
Q Consensus 579 A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leD--yA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~G 656 (840)
..++.+||.+.... +|+| .|.+. ...| |.|.+.|.+.+ + +...|.+ ...+.+.+.+.- +...|
T Consensus 198 ~~~~~~~L~~~q~~--~GGf-----~gr~~---k~~D~~ysf~~~a~l~~--l-~~~~~~~-~~~l~~~l~~~q-~~~~G 262 (287)
T cd02894 198 RDRLGWWLCERQLP--SGGL-----NGRPE---KLPDVCYSWWVLSSLKI--I-GRLHWIN-KNKLKNFILACQ-DEEDG 262 (287)
T ss_pred HHHHHHHHHHhCCC--CCCc-----CCCCC---CCCchhHhhHHHHHHHH--h-ccccccC-HHHHHHHHHHhc-CCCCC
Confidence 44577888776543 4667 23331 1233 44555444433 3 4445655 778888887764 34467
Q ss_pred ccccCC
Q 003187 657 GYFNTT 662 (840)
Q Consensus 657 gyf~t~ 662 (840)
||-..+
T Consensus 263 Gf~~~p 268 (287)
T cd02894 263 GFADRP 268 (287)
T ss_pred CcCCCC
Confidence 776543
No 260
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.10 E-value=4.4 Score=38.80 Aligned_cols=53 Identities=26% Similarity=0.261 Sum_probs=35.1
Q ss_pred HHHHHHHHh---cCCCEEEEEec--------cCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCcc
Q 003187 128 EEAFAEARK---RDVPIFLSIGY--------STCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPD 186 (840)
Q Consensus 128 ~eAl~~Ak~---e~KpI~l~~g~--------~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~pd 186 (840)
.+.|++..+ .+|-|||.|.+ +||+.|..-| |-|.+.++ ++-..|.|++-++|-
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AE------Pvi~~alk~ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAE------PVINEALKHAPEDVHFVHVYVGNRPY 78 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhh------HHHHHHHHhCCCceEEEEEEecCCCc
Confidence 444554432 35669999865 6999999865 45556665 466777777776653
No 261
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=79.51 E-value=1.6e+02 Score=36.17 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=40.9
Q ss_pred CCCeEEEEec-CCCCCCCCCcchHHHHHHHHHHHHHHHHccC---ChHHHHHHHHHHHHHHHhccCCCCceEe
Q 003187 357 VGGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK---DVFYSYICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 357 v~GGF~RYsv-D~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tg---d~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
-.||+. |+. +..|.+ .-|-|..+.++..+..... ++...+..+++++||++ |++++|||.+
T Consensus 357 ~~GGW~-f~~~~~~~pd------sD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~-~Qn~dGGw~~ 421 (634)
T TIGR03463 357 AKGGWC-FSDGDHGWPV------SDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILS-RQNEDGGFGT 421 (634)
T ss_pred CCCccc-cccCCCCCCc------cccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHH-hcCCCCCEec
Confidence 468877 664 555544 2346767777766544322 22445788999999996 8999999875
No 262
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=79.09 E-value=37 Score=41.75 Aligned_cols=135 Identities=17% Similarity=0.131 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-cCCCCCCC-CCcchHHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP-GFLDDYAF 618 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~-~~g~~~~~-~~leDyA~ 618 (840)
++++.||..++ +.+.|++.++||.+.... +|.+++.| -+|++... -.+|-|++
T Consensus 301 a~~a~AL~~~G-----------------------~~~~a~~~~~~l~~~~~~--~G~~lq~y~vdG~~~~~~iQlD~~g~ 355 (648)
T TIGR01535 301 YQVANAFLAAG-----------------------DVDSALRSLDYLAKVQQD--NGMFPQNSWVDGKPYWTGIQLDETAF 355 (648)
T ss_pred HHHHHHHHHCC-----------------------CHHHHHHHHHHHHHHhcc--CCCcCceeccCCCCCCCCccccHHHH
Confidence 77788887775 557889999999888764 46655554 67877554 56778899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHH-
Q 003187 619 LISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI- 697 (840)
Q Consensus 619 ~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~l- 697 (840)
.|.++..+++... ..+....+.+++.+.+. +....-+ .+|.-.+..|+-.|....+|.+.+.+
T Consensus 356 ~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~-~p~p~~d--------------~WEer~g~~~~T~a~v~aaL~~Aa~iA 419 (648)
T TIGR01535 356 PILLAYRLHRYDH-AFYDKMLKPAADFIVKN-GPKTGQE--------------RWEEIGGYSPSTLAAEIAGLTAAADIA 419 (648)
T ss_pred HHHHHHHHHHcCc-HHHHHHHHHHHHHHHHc-CCCCCCC--------------cccccCCcCchhHHHHHHHHHHHHHHH
Confidence 9999988888544 45556667777777653 2111101 12333455676666555666654444
Q ss_pred --hCCCC-chHHHHHHHHHHHH
Q 003187 698 --VAGSK-SDYYRQNAEHSLAV 716 (840)
Q Consensus 698 --t~~~~-~~~y~~~A~~~l~~ 716 (840)
.|+.. ...|++.|+++-+.
T Consensus 420 ~~~g~~~~a~~w~~~Ad~i~~~ 441 (648)
T TIGR01535 420 EQNGDAGSAQKYRETADNWQKL 441 (648)
T ss_pred HHcCCcHHHHHHHHHHHHHHHH
Confidence 44321 13355555544333
No 263
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=79.03 E-value=3.7 Score=44.30 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC-CCCCCCCCcchHH
Q 003187 539 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYA 617 (840)
Q Consensus 539 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~-g~~~~~~~leDyA 617 (840)
|.+-.+.-+.+|+.-... +.=++.+++...-+. .++ |......+-+|-+
T Consensus 47 WqAHlldclvDA~lR~~~----------------~Arr~ri~~T~r~~~--------------vRN~G~l~shdyYDDma 96 (377)
T COG4833 47 WQAHLLDCLVDAQLRDPQ----------------PARRARINRTVRSHR--------------VRNFGWLNSHDYYDDMA 96 (377)
T ss_pred HHHHHHHHHHHHHhcCCc----------------HhHHHHHHHHHhhhh--------------ccccccccchhhhhhHH
Confidence 456667777778764433 334455555442211 122 3344567789999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHcccccCCcc
Q 003187 618 FLISGLLDLYEFGSGTKWLVWAI-ELQNTQDELFLDREGGGY 658 (840)
Q Consensus 618 ~~i~aLl~LYeaTgd~~yL~~A~-~L~~~~~~~F~D~~~Ggy 658 (840)
+++.|+-++|.++| .+++.|. .+.+.+.+-..|..+||+
T Consensus 97 WlALAl~Ra~Kv~g--vr~~~alp~l~~~~v~Gw~D~~gGg~ 136 (377)
T COG4833 97 WLALALERADKVAG--VRRRRALPKLTNQFVEGWVDEDGGGI 136 (377)
T ss_pred HHHHHHHhhhcccc--eeccccchhHHHhhhhccccccCCcc
Confidence 99999999999999 7777666 566777777778777774
No 264
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=78.93 E-value=89 Score=37.37 Aligned_cols=283 Identities=16% Similarity=0.126 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHH
Q 003187 382 QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEH 461 (840)
Q Consensus 382 NA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~ 461 (840)
|=+.+..|.-||-+||++.|+..|.++.+=|+--+--|.|-=++..|.-|.. +.-|. =+.|..+ ++
T Consensus 264 NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~---------~~n~~-wasgg~S-IL--- 329 (625)
T KOG2204|consen 264 NIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGD---------ADNYG-WASGGSS-IL--- 329 (625)
T ss_pred eeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCc---------cCCcc-cccCcch-Hh---
Confidence 5567788888899999999999999999999988888888666655554410 11111 0000000 11
Q ss_pred hCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhh---c
Q 003187 462 YYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIV---S 538 (840)
Q Consensus 462 y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKilt---s 538 (840)
++.|. ||+. ..-+.+..|.+. ..++...+|+-|-..- +|....-.+|.- -
T Consensus 330 ---aE~gt------------------lhle--f~~LS~ltg~P~--~~ekv~~IRk~l~k~e--kP~GLypnYinP~sg~ 382 (625)
T KOG2204|consen 330 ---AEFGT------------------LHLE--FSYLSKLTGNPT--FAEKVVKIRKVLNKSE--KPHGLYPNYINPSSGE 382 (625)
T ss_pred ---hhcCc------------------eeee--hHHhhhccCCch--HHHHHHHHHHHHHhhc--CCCCCCcccccCCCCc
Confidence 11111 1110 011222223322 2334444444443321 122111111110 2
Q ss_pred HHHHHHH--H--------HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC--eEEEe-ecCC
Q 003187 539 WNGLVIS--S--------FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH--RLQHS-FRNG 605 (840)
Q Consensus 539 WNal~I~--A--------La~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G--~l~~~-~~~g 605 (840)
|--.+.+ | |.++.-.. +.++.++..+=.++...|.+++.....| ..+-+ ++.|
T Consensus 383 wgq~~tslg~lgDSfyeyllK~wl~s--------------~kTd~eak~my~~am~Ai~~~li~~S~~s~ltyi~e~~~g 448 (625)
T KOG2204|consen 383 WGQHHTSLGALGDSFYEYLLKAWLQS--------------DKTDCEAKGMYEDAMIAIEKYLIFKSDGSGLTYISEWNGG 448 (625)
T ss_pred hhhHHhHHhhhhhhHHHHHHHHHhhc--------------CCcchHHHHhHHHHHHHHHhhheeccCCCCeEEEEecCCC
Confidence 3322221 2 22333222 2233566666677777777777654333 33332 5554
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHcccccC----CccccCCCCCCccccccccCC
Q 003187 606 PSKAPGFLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREG----GGYFNTTGEDPSVLLRVKEDH 676 (840)
Q Consensus 606 ~~~~~~~leDyA~~i~aLl~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~~----Ggyf~t~~~~~~l~~R~k~~~ 676 (840)
.. .....-.|.+.-|+++|..+.++. .|++.+.++...+-+-|....+ +.|+++.. ++...+|..+.+
T Consensus 449 ~l--ehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~TchesY~rt~T~lgpesf~fn~~-~ea~~~r~~Esy 525 (625)
T KOG2204|consen 449 GL--EHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTRTTTKLGPESFWFNHG-VEAFAVRKVESY 525 (625)
T ss_pred ch--hhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhccccccChhhhcccCc-cchhhhhcccce
Confidence 32 122344577888889998888774 5999999999999887754332 23544432 233333332221
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 003187 677 DGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPL 730 (840)
Q Consensus 677 D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~ 730 (840)
-+-- ...++.+.-|.++||+ +.||+-+-+.++++-. ..+...++..
T Consensus 526 --yILr--pEviEs~fYlwRlT~d---~kyR~wgweavqalek-~cr~~~G~~g 571 (625)
T KOG2204|consen 526 --YILR--PEVIESYFYLWRLTGD---QKYRSWGWEAVQALEK-YCRVAKGYSG 571 (625)
T ss_pred --eecC--HHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHH-hcccccchhh
Confidence 1111 2467788899999996 7899998877765432 2233344444
No 265
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=78.64 E-value=25 Score=41.74 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 003187 618 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 652 (840)
Q Consensus 618 ~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D 652 (840)
.+++...-||+||+|+-||+.-+.+.+.++..++-
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l~sLe~~~k~ 409 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDMLKSLEKYTKV 409 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence 58999999999999999999999999999888764
No 266
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=78.62 E-value=90 Score=32.63 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 003187 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (840)
Q Consensus 336 ~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~ 415 (840)
...+++..+++.+.. .. +.+|||-- |.... +-..++-+..+.++..+.... +......+++++||.+.
T Consensus 49 ~~~~~~~~~~~~l~~--~q-~~dG~~~~------~~~~~-~~~~~~T~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 116 (300)
T cd00688 49 KADENIEKGIQRLLS--YQ-LSDGGFSG------WGGND-YPSLWLTAYALKALLLAGDYI--AVDRIDLARALNWLLSL 116 (300)
T ss_pred cchHHHHHHHHHHHh--cc-CCCCCccC------CCCCC-CcchHhHHHHHHHHHHcCCcc--ccCHHHHHHHHHHHHHc
Confidence 344556666666654 11 56788862 21111 445666777888877655433 45667889999999974
Q ss_pred ccCCCCceEe
Q 003187 416 MIGPGGEIFS 425 (840)
Q Consensus 416 m~~~~Ggfys 425 (840)
+.++|||..
T Consensus 117 -q~~dG~~~~ 125 (300)
T cd00688 117 -QNEDGGFRE 125 (300)
T ss_pred -cCCCCCeee
Confidence 677888764
No 267
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=78.38 E-value=32 Score=36.84 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=45.9
Q ss_pred cccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceE
Q 003187 354 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (840)
Q Consensus 354 ~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (840)
|-+-+|||. -| -.+-+=-..--|..+..|+.|.+...-+ .++..++++||... +.++|.|-
T Consensus 9 y~~~DGsfs------~f-~~~~~~s~WLTAfv~k~f~~a~~~i~vd--~~~i~~a~~wL~~~-Q~~dG~F~ 69 (246)
T PF07678_consen 9 YRRSDGSFS------AF-SSDSPSSTWLTAFVVKVFSQAKKYIFVD--ENVICRAVKWLISQ-QQPDGSFE 69 (246)
T ss_dssp TB-TTSSBB------SS-TTTSSBBHHHHHHHHHHHHHHTTTS-CE--HHHHHHHHHHHHHH-BETTSEB-
T ss_pred CCCCCCCee------cc-ccCCcccHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHh-hcCCCccc
Confidence 346688888 34 4444667888999999999998884433 57889999999998 78888884
No 268
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=78.04 E-value=2.4 Score=46.56 Aligned_cols=47 Identities=23% Similarity=0.197 Sum_probs=34.8
Q ss_pred chHHHHH---HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceE
Q 003187 377 KMLYDQG---QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (840)
Q Consensus 377 KMLYDNA---~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (840)
+-.+||. .-|..++++|+.|+|+.|++.+.+.++||+. .+-|+||+-
T Consensus 33 ~~TiDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWP 82 (289)
T PF09492_consen 33 NSTIDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWP 82 (289)
T ss_dssp SCE-GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--B
T ss_pred cCcccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence 4455643 4567789999999999999999999999996 677899974
No 269
>PRK10137 alpha-glucosidase; Provisional
Probab=77.78 E-value=1.1e+02 Score=38.44 Aligned_cols=49 Identities=8% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHH---HHHHHHHHccCCh----HHHHHHHHHHHHHHHhccCCCCceEeeccCC
Q 003187 382 QGQLA---NVYLDAFSLTKDV----FYSYICRDILDYLRRDMIGPGGEIFSAEDAD 430 (840)
Q Consensus 382 NA~Ll---~~ya~Ay~~tgd~----~y~~~A~~t~~fl~r~m~~~~Ggfysa~DAD 430 (840)
||.|. ..+++.+.+.|++ .|++.|++..+.|.+.|++++-|||...|-+
T Consensus 581 NsyLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~DydL~ 636 (786)
T PRK10137 581 ASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVRIE 636 (786)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEecC
Confidence 77777 5567777777764 4788888999999999999998888766555
No 270
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=75.22 E-value=17 Score=44.39 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhcccCCCCCCCCCC---------CC-C------------C----hhHHHHHHHhhhhhcccCCCCCC
Q 003187 281 PQNALRLCAEQLSKSYDSRFGGFGSAP---------KF-P------------R----PVEIQMMLYHSKKLEDTGKSGEA 334 (840)
Q Consensus 281 ~~~~~~~~~~~l~~~~D~~~GGfg~aP---------KF-P------------~----~~~l~~Ll~~~~~~~~~~~~~~~ 334 (840)
..+.+++++..|.+.-+ ..|||+.-. +. | . ...+..|..+..+ .
T Consensus 386 ~~~~l~~a~~~Ll~~Qn-~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r---------~ 455 (621)
T TIGR01787 386 KRDRLRDAVNWILGMQS-SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHR---------A 455 (621)
T ss_pred cHHHHHHHHHHHHHHcC-CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCc---------c
Confidence 45667777777776655 468887411 11 2 1 2344444433211 1
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 003187 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (840)
Q Consensus 335 ~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r 414 (840)
....+.+.+.++-+.. .. +-+|+|+. .|.+.+ .|..+..+.++..+.+...+. ..++++++||++
T Consensus 456 ~~~~~~i~rAl~~L~~--~Q-~~DGsw~g-----~wg~~y----~YgT~~al~aL~~~G~~~~~~---~~i~rA~~~L~~ 520 (621)
T TIGR01787 456 DEIRNVLERALEYLRR--EQ-RADGSWFG-----RWGVNY----TYGTGFVLSALAAAGRTYRNC---PEVQKACDWLLS 520 (621)
T ss_pred HhHHHHHHHHHHHHHH--hc-CCCCCCcc-----cCCCCC----chhHHHHHHHHHHhCCcccCC---HHHHHHHHHHHh
Confidence 1233455555555554 22 24677763 677653 577778888888765443332 788899999998
Q ss_pred hccCCCCceE
Q 003187 415 DMIGPGGEIF 424 (840)
Q Consensus 415 ~m~~~~Ggfy 424 (840)
. ++++||+-
T Consensus 521 ~-Q~~DGGWg 529 (621)
T TIGR01787 521 R-QMPDGGWG 529 (621)
T ss_pred h-cCCCCCCC
Confidence 4 67889884
No 271
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=75.06 E-value=1.1e+02 Score=35.53 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcccccCC-----ccccCCCC--CCccccccccCCCCCCCChHH---HHHHHHHHHHHHhCC
Q 003187 631 SGTKWLVWAIELQNTQDELFLDREGG-----GYFNTTGE--DPSVLLRVKEDHDGAEPSGNS---VSVINLVRLASIVAG 700 (840)
Q Consensus 631 gd~~yL~~A~~L~~~~~~~F~D~~~G-----gyf~t~~~--~~~l~~R~k~~~D~a~PS~Ns---~~a~~LlrL~~lt~~ 700 (840)
.+++.++.|++|.+.+-+.+-...+| .+|..... ..++.+++.+. +|- ..++.|.-||++|++
T Consensus 389 ~~~~hl~lA~~l~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~-------HnLlRPEtVESlfylYriT~D 461 (546)
T KOG2431|consen 389 ASEEHLELAQELMETCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDR-------HNLLRPETVESLFYLYRITGD 461 (546)
T ss_pred cchHHHHHHHHHHHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchh-------hcccChHHHhhhheeeEecCC
Confidence 35568999999999999887555555 26664432 33444433332 332 478889999999996
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhh-hHHHH
Q 003187 701 SKSDYYRQNAEHSLAVFETRLKDMAM-AVPLM 731 (840)
Q Consensus 701 ~~~~~y~~~A~~~l~~~~~~i~~~p~-~~~~~ 731 (840)
..|++-.=++.++|.... +.|. +++++
T Consensus 462 ---~kYqewGW~if~sfekyt-rv~~ggytSi 489 (546)
T KOG2431|consen 462 ---RKYQEWGWEIFQSFEKYT-RVPSGGYTSI 489 (546)
T ss_pred ---chHHHHhHHHHHHHHHhc-ccCCCCccch
Confidence 789999999999987655 4454 66654
No 272
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=71.15 E-value=55 Score=35.52 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcccCCCCCCCCCCCCCC-hhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCC
Q 003187 281 PQNALRLCAEQLSKSYDSRFGGFGSAPKFPR-PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (840)
Q Consensus 281 ~~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~-~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~G 359 (840)
+....+++++.+.+..+...|||+..|--+. .....+.+.....-++. ...... ++-+..-+.... +-.|
T Consensus 45 ~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~--~~~~~~-~~~~~~~l~~~q------~~dG 115 (286)
T cd02890 45 DDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD--ALSRID-REKIYKFLSSLQ------NPDG 115 (286)
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc--ccchhh-HHHHHHHHHHhc------CCCC
Confidence 3455678888888777345799998753322 21111111111111110 000111 222222233332 2458
Q ss_pred eEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEe
Q 003187 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 360 GF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
||. ++. |...|.-=.- ..+.+..+.+... ....+++++||.+ ++.++|||-.
T Consensus 116 gf~-~~~---~~~~d~~~ty--------~al~~l~ll~~~~-~~~~~~~~~~l~~-~Q~~dGGf~~ 167 (286)
T cd02890 116 SFR-GDL---GGEVDTRFVY--------CALSILSLLNILT-DIDKEKLIDYILS-CQNYDGGFGG 167 (286)
T ss_pred Ccc-cCC---CCCchHHHHH--------HHHHHHHHhCCch-hhhHHHHHHHHHH-hCCCCCCcCC
Confidence 884 453 4333332211 1222222233322 4567889999997 5788999853
No 273
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=70.65 E-value=2.6e+02 Score=34.31 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHHHHhccCCCCceEe
Q 003187 397 KDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 397 gd~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
.++...+..+++++||++ |++++|||-+
T Consensus 382 ~~~~~~~~l~~a~~~Ll~-~Qn~dGGw~a 409 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILG-MQSSNGGFAA 409 (621)
T ss_pred cccccHHHHHHHHHHHHH-HcCCCCCEee
Confidence 356667889999999997 8899999854
No 274
>PLN03012 Camelliol C synthase
Probab=70.43 E-value=23 Score=44.20 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeec---CCC----CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003187 577 EVAESAASFIRRHLYDEQTHRLQHSFR---NGP----SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 643 (840)
Q Consensus 577 e~A~~~~~fl~~~l~d~~~G~l~~~~~---~g~----~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~ 643 (840)
+..+++.+||+++-.. +|+...++. +.. .....+..--|+++.||+...+...|+.-+.+|.+.+
T Consensus 639 ~~Irrav~fLls~Q~~--DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~L 710 (759)
T PLN03012 639 EAIRKGVHFLLAAQKD--NGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLI 710 (759)
T ss_pred HHHHHHHHHHHHhcCC--CCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 4677889999988654 466655432 111 0123556677899999988766656656677776554
No 275
>PTZ00062 glutaredoxin; Provisional
Probab=70.22 E-value=15 Score=38.59 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCEEEEEe-c---cCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003187 129 EAFAEARKRDVPIFLSIG-Y---STCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g-~---~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G 203 (840)
+-+++.-++ +||+|..- . ++|++|+.+. ++|++ +.-...+|.++.+++.+.. ..++|...
T Consensus 104 ~~v~~li~~-~~Vvvf~Kg~~~~p~C~~C~~~k----------~~L~~~~i~y~~~DI~~d~~~~~~l----~~~sg~~T 168 (204)
T PTZ00062 104 EKIERLIRN-HKILLFMKGSKTFPFCRFSNAVV----------NMLNSSGVKYETYNIFEDPDLREEL----KVYSNWPT 168 (204)
T ss_pred HHHHHHHhc-CCEEEEEccCCCCCCChhHHHHH----------HHHHHcCCCEEEEEcCCCHHHHHHH----HHHhCCCC
Confidence 344554444 56666553 2 6899999874 34444 2222346777666654332 33334444
Q ss_pred CCcEEEECCCCceec
Q 003187 204 WPLSVFLSPDLKPLM 218 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~ 218 (840)
+|.. |++ |+.|.
T Consensus 169 vPqV-fI~--G~~IG 180 (204)
T PTZ00062 169 YPQL-YVN--GELIG 180 (204)
T ss_pred CCeE-EEC--CEEEc
Confidence 4443 343 55553
No 276
>PLN02345 endoglucanase
Probab=70.02 E-value=1.4e+02 Score=35.41 Aligned_cols=118 Identities=11% Similarity=-0.027 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCC--CCcch-------------------HHHHHHHHHHHHHHcC
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--GFLDD-------------------YAFLISGLLDLYEFGS 631 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~--~~leD-------------------yA~~i~aLl~LYeaTg 631 (840)
+++++.++-..|||++..- .+|.+++...++..+.. ..+|| =+.++.+|...+.+..
T Consensus 82 ~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk 159 (469)
T PLN02345 82 DSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFK 159 (469)
T ss_pred HHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 7899999999999987653 35788887554322111 11222 1334555555555544
Q ss_pred --CH----HHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCC--hHHHHHHHHHHHHHHhCCCCc
Q 003187 632 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSKS 703 (840)
Q Consensus 632 --d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS--~Ns~~a~~LlrL~~lt~~~~~ 703 (840)
|+ ++|+.|+++++.++++ .|.|....... .+..+| -+-.++++-..|+..||+
T Consensus 160 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~~~-----------~~~Y~s~~~~DEl~WAAawLy~ATgd--- 220 (469)
T PLN02345 160 SSDSTYSDTLLKHAKQLFNFADKY-----RGSYSESIPEV-----------QDYYNSTGYGDELLWAASWLYHATGD--- 220 (469)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCCcc-----------CCCCCCcccccHHHHHHHHHHHHhCC---
Confidence 44 4588888888887753 22232211000 011111 113578888889999996
Q ss_pred hHHHHHHH
Q 003187 704 DYYRQNAE 711 (840)
Q Consensus 704 ~~y~~~A~ 711 (840)
..|.+.+.
T Consensus 221 ~~Yl~~~~ 228 (469)
T PLN02345 221 KTYLAYVT 228 (469)
T ss_pred HHHHHHHH
Confidence 78988774
No 277
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.85 E-value=1.7e+02 Score=32.04 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccc
Q 003187 580 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 659 (840)
Q Consensus 580 ~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf 659 (840)
..+.-||-++-.. +|+| +|+| -.+.|-.|--+.|..|- +-|...|.++. +|.+++..- .|.++|||-
T Consensus 213 d~lgwwlceRQ~~--sGGL-----NGRp---eKlpDVCYSwWvlsSL~-iigrl~wId~e-kL~~FIl~c-Qd~~~GGfs 279 (329)
T KOG0366|consen 213 DLLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSLA-IIGRLHWIDRE-KLTKFILAC-QDEETGGFS 279 (329)
T ss_pred HHHHHHHHhccCC--CCCC-----CCCc---ccCcchhhHHHHHhHHH-HhhhhhhccHH-HHHHHHHhc-CCCCCCCcC
Confidence 3455667666543 5666 4554 34566666666666654 45778888775 566666543 477889998
Q ss_pred cCCCC
Q 003187 660 NTTGE 664 (840)
Q Consensus 660 ~t~~~ 664 (840)
+.+.+
T Consensus 280 DRpgd 284 (329)
T KOG0366|consen 280 DRPGD 284 (329)
T ss_pred CCCCC
Confidence 87654
No 278
>PRK10824 glutaredoxin-4; Provisional
Probab=67.98 E-value=27 Score=33.38 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCEEEEEec----cCChhhhhhhh
Q 003187 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEV 158 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~wC~~me~ 158 (840)
.+.+++.-++++ |+|..-. +||++|+...+
T Consensus 5 ~~~v~~~I~~~~-Vvvf~Kg~~~~p~Cpyc~~ak~ 38 (115)
T PRK10824 5 IEKIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQ 38 (115)
T ss_pred HHHHHHHHhcCC-EEEEECCCCCCCCCchHHHHHH
Confidence 345566666554 5555433 59999998753
No 279
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=67.94 E-value=15 Score=31.64 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.3
Q ss_pred EEEeccCChhhhhhhhc
Q 003187 143 LSIGYSTCHWCHVMEVE 159 (840)
Q Consensus 143 l~~g~~wC~wC~~me~e 159 (840)
+.|....|+||..+++.
T Consensus 2 ~~f~d~~Cp~C~~~~~~ 18 (98)
T cd02972 2 VEFFDPLCPYCYLFEPE 18 (98)
T ss_pred eEEECCCCHhHHhhhHH
Confidence 45788899999999873
No 280
>PLN02266 endoglucanase
Probab=67.49 E-value=2e+02 Score=34.50 Aligned_cols=126 Identities=10% Similarity=-0.033 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCC--C-------------------CcchHHHHHHHHHHHHHHc
Q 003187 572 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--G-------------------FLDDYAFLISGLLDLYEFG 630 (840)
Q Consensus 572 ~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~--~-------------------~leDyA~~i~aLl~LYeaT 630 (840)
.+.+|+.++-..||+++-... +|++++...++..+.. + -.+--+.++.+|...+.+-
T Consensus 129 ~pd~Ldelkw~~D~llk~~~~--~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vf 206 (510)
T PLN02266 129 LQNAKDAIRWATDYLLKATAH--PDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVF 206 (510)
T ss_pred cHHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHh
Confidence 378999999999999976543 5778887644321110 1 1112233455555555554
Q ss_pred C--CH----HHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCch
Q 003187 631 S--GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSD 704 (840)
Q Consensus 631 g--d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~ 704 (840)
. |+ +.|+.|+++++.++++ .|.|....... ...+....=+-.-.++++-..|+..||+ +
T Consensus 207 k~~D~~yA~~~L~~Ak~ly~fa~~~-----~g~y~~~~~~~-------~~~~y~s~s~~~DEl~WAAawLy~ATGd---~ 271 (510)
T PLN02266 207 RKSDPTYSKLLVRRAIRVFQFADKY-----RGAYSNGLKPD-------VCPFYCSYSGYQDELLWGAAWLHKATKN---P 271 (510)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhC-----CCCccCCCCcc-------cCCCcccCCcchHHHHHHHHHHHHHhCC---H
Confidence 4 44 4578888888877642 22231110000 0000000000123667777889999986 7
Q ss_pred HHHHHHHHHH
Q 003187 705 YYRQNAEHSL 714 (840)
Q Consensus 705 ~y~~~A~~~l 714 (840)
.|.+.++...
T Consensus 272 ~Yl~~~~~~~ 281 (510)
T PLN02266 272 TYLNYIQVNG 281 (510)
T ss_pred HHHHHHHHHH
Confidence 8988876543
No 281
>PRK10137 alpha-glucosidase; Provisional
Probab=66.97 E-value=48 Score=41.57 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHH---HHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcccccCCccccCC
Q 003187 617 AFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 662 (840)
Q Consensus 617 A~~i---~aLl~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 662 (840)
+++. ..|.++++..|++ +|.++|..+.+.+.+.|||++.|.||+-.
T Consensus 582 syLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~Dyd 634 (786)
T PRK10137 582 SYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVR 634 (786)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEe
Confidence 5555 6677788888875 48889999999999999999998887654
No 282
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=66.54 E-value=22 Score=32.46 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhccCCCCceE
Q 003187 402 SYICRDILDYLRRDMIGPGGEIF 424 (840)
Q Consensus 402 ~~~A~~t~~fl~r~m~~~~Ggfy 424 (840)
...++++++||++ ++.++|||-
T Consensus 91 ~~~~~~a~~~l~~-~Q~~dGg~~ 112 (113)
T PF13249_consen 91 EEAVRKAVDWLLS-CQNPDGGWG 112 (113)
T ss_dssp HTTHCCHHHHHHH-TB-TTSSB-
T ss_pred cHHHHHHHHHHHH-hcCCCCCCC
Confidence 6788999999998 778899983
No 283
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=66.18 E-value=21 Score=39.48 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=53.0
Q ss_pred CCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC-CC
Q 003187 528 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GP 606 (840)
Q Consensus 528 ~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~-g~ 606 (840)
..-+|+. -...-|.-|+++|+.+++ ++|.+++.+..+||++.-+. +||+-..|-. +.
T Consensus 33 ~~TiDN~----aT~~ei~fLa~~y~~t~d----------------~~y~~A~~kgl~ylL~aQyp--nGGWPQ~yP~~~~ 90 (289)
T PF09492_consen 33 NSTIDND----ATTTEIRFLARVYQATKD----------------PRYREAFLKGLDYLLKAQYP--NGGWPQFYPLRGG 90 (289)
T ss_dssp SCE-GGG----TTHHHHHHHHHHHHHCG-----------------HHHHHHHHHHHHHHHHHS-T--TS--BSECS--SG
T ss_pred cCcccCh----hHHHHHHHHHHHHHHhCC----------------hHHHHHHHHHHHHHHHhhCC--CCCCCccCCCCCC
Confidence 4556766 223457889999999987 89999999999999998886 7888776522 11
Q ss_pred CCCCCCcchHH--HHHHHHHHHHHHcCCH
Q 003187 607 SKAPGFLDDYA--FLISGLLDLYEFGSGT 633 (840)
Q Consensus 607 ~~~~~~leDyA--~~i~aLl~LYeaTgd~ 633 (840)
-...-+.+|-| -++.-|.+.++..++-
T Consensus 91 Y~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 91 YHDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp GGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred CCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 11223455654 4666777777776655
No 284
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=64.61 E-value=10 Score=44.82 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHH---
Q 003187 614 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVIN--- 690 (840)
Q Consensus 614 eDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~--- 690 (840)
+-.--++-||+.+|..|||+-|++.|.+|.+.++..|--+.+--+-.+....+. .+. +-++. .+.|+.++.
T Consensus 262 E~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~--~~n---~~was-gg~SILaE~gtl 335 (625)
T KOG2204|consen 262 ETNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGD--ADN---YGWAS-GGSSILAEFGTL 335 (625)
T ss_pred eeeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCc--cCC---ccccc-CcchHhhhcCce
Confidence 344456789999999999999999999999999998865533122111110000 111 01111 123455544
Q ss_pred ---HHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 003187 691 ---LVRLASIVAGSKSDYYRQNAEHSLAVFE 718 (840)
Q Consensus 691 ---LlrL~~lt~~~~~~~y~~~A~~~l~~~~ 718 (840)
...|+.++|+ +.|.++...+...+.
T Consensus 336 hlef~~LS~ltg~---P~~~ekv~~IRk~l~ 363 (625)
T KOG2204|consen 336 HLEFSYLSKLTGN---PTFAEKVVKIRKVLN 363 (625)
T ss_pred eeehHHhhhccCC---chHHHHHHHHHHHHH
Confidence 6689999986 889999987776653
No 285
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=64.21 E-value=1.3e+02 Score=36.98 Aligned_cols=134 Identities=21% Similarity=0.170 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC---------CCCC
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---------KAPG 611 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~---------~~~~ 611 (840)
++++.||++++.. + +++-..-+++.+||+++-.....|.....+++..+ ....
T Consensus 310 ala~~AL~e~g~~--~----------------~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~p 371 (634)
T TIGR03463 310 AFAVQALAATPET--A----------------GRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWP 371 (634)
T ss_pred HHHHHHHHHcCCC--c----------------hhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCC
Confidence 8889999886421 1 34556778899999887653222221111111111 1123
Q ss_pred CcchHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHcccccCCccc-cCCCCCCccc--cccc-----cCCC
Q 003187 612 FLDDYAFLISGLLDLYEFGS------GTKWLVWAIELQNTQDELFLDREGGGYF-NTTGEDPSVL--LRVK-----EDHD 677 (840)
Q Consensus 612 ~leDyA~~i~aLl~LYeaTg------d~~yL~~A~~L~~~~~~~F~D~~~Ggyf-~t~~~~~~l~--~R~k-----~~~D 677 (840)
..||-|.++.||+.+..... ..+.+.+|.+.+..+. .+ +|||. +........+ +... ...|
T Consensus 372 dsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Q----n~-dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d 446 (634)
T TIGR03463 372 VSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQ----NE-DGGFGTYERQRGPRVLELLNPSEMFSTCMTD 446 (634)
T ss_pred ccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhc----CC-CCCEeccCCCCcHHHHhcCChHHhhcccccC
Confidence 46888999999998865322 2245555555443332 33 35544 2221111110 0000 1225
Q ss_pred CCCCChHHHHHHHHHHHHHH
Q 003187 678 GAEPSGNSVSVINLVRLASI 697 (840)
Q Consensus 678 ~a~PS~Ns~~a~~LlrL~~l 697 (840)
...+..++.++..|..+...
T Consensus 447 ~~~~d~Ta~~l~aL~~~~~~ 466 (634)
T TIGR03463 447 VSYVECTSSCLQALAAWRKH 466 (634)
T ss_pred CCcCcHHHHHHHHHHHHhhc
Confidence 66677777777777666543
No 286
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=63.28 E-value=36 Score=37.97 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=64.3
Q ss_pred hhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEE--e--ecCCCCCC
Q 003187 536 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQH--S--FRNGPSKA 609 (840)
Q Consensus 536 ltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~--G~l~~--~--~~~g~~~~ 609 (840)
-|+--|-+|.-++...+.+|+ +-|-+.|+++.+||++.-....+ |.... + |....+.+
T Consensus 183 ctac~gtlilefaals~~tg~----------------~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgi 246 (587)
T KOG2430|consen 183 CTACAGTLILEFAALSRFTGA----------------PIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGI 246 (587)
T ss_pred hhhccchhhhhHHHHhhccCC----------------hhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCc
Confidence 466668889999999999887 67999999999999986544322 22211 1 22222333
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003187 610 PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 649 (840)
Q Consensus 610 ~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~ 649 (840)
.+-.+.| -+=+|..|-..||+.||++-.+-.+.+.+.
T Consensus 247 gagidsy---yey~lkayillgddsfldrfn~hydai~ry 283 (587)
T KOG2430|consen 247 GAGIDSY---YEYLLKAYILLGDDSFLDRFNKHYDAIKRY 283 (587)
T ss_pred CcchHHH---HHHHHHHhheeccHHHHHHHHHHHHHHHHH
Confidence 3444444 334566777889999999988877776654
No 287
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=62.26 E-value=8 Score=37.03 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=19.3
Q ss_pred hcCCCEEEEEeccCChhhhhhhh
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEV 158 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~ 158 (840)
.+.+++++.|+-.+|+||+.|+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~ 25 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAP 25 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhH
Confidence 35677888899999999999974
No 288
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=61.42 E-value=30 Score=39.09 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC---CCCCCcch
Q 003187 539 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---KAPGFLDD 615 (840)
Q Consensus 539 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~---~~~~~leD 615 (840)
---.+++||..|++.-++. ..+|+..|+.+..-++.+... .|+..- .-|.. ......-+
T Consensus 114 gDl~iA~ALl~A~~~Wg~~--------------~~~y~~~A~~~~~~i~~~~v~--~g~~~l--lpG~~~f~~~~~~~~n 175 (342)
T PF01270_consen 114 GDLDIAYALLLAARRWGDG--------------AYNYLAEALAIINAIKTHEVN--PGRYVL--LPGDWGFNSDDYWTTN 175 (342)
T ss_dssp HHHHHHHHHHHHHHHHTSS--------------SSHHHHHHHHHHHHHHHHHEE--TTEEEE--CSSSSSCBTTSEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCc--------------chhHHHHHHHHHHHHHhheeC--CCceEE--eccccccCCCCceEeC
Confidence 3467899999999999852 157999999999998888776 353222 22221 11111112
Q ss_pred HHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCC
Q 003187 616 YAFLI-SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 656 (840)
Q Consensus 616 yA~~i-~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~G 656 (840)
=++.+ -++..+++++++..|.+.+..-.+.+.+.. .+.+|
T Consensus 176 pSY~~~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~-~~~tG 216 (342)
T PF01270_consen 176 PSYFMPPAFRAFAAATGDPRWNEVADSSYALLQKAS-FPKTG 216 (342)
T ss_dssp GGGS-HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHH-TTTTT
T ss_pred hhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-ccCCC
Confidence 24444 777899999999999999998888777665 33444
No 289
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=60.74 E-value=2.1e+02 Score=33.18 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC--------CCC------------CC-CcchHHHHHHHHHHHHHHc
Q 003187 572 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--------SKA------------PG-FLDDYAFLISGLLDLYEFG 630 (840)
Q Consensus 572 ~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~--------~~~------------~~-~leDyA~~i~aLl~LYeaT 630 (840)
.++.|+.++-.++||++.... .|.|+....+|. +.. .. -.+--+.++-+|...+.+-
T Consensus 93 ~~dllde~kwg~D~llkm~~~--~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~ 170 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQDS--DGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVF 170 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBSC--TTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCC--CCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhc
Confidence 388999999999999976543 466776554421 100 00 1111234455555555554
Q ss_pred CC--H----HHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCC--hHHHHHHHHHHHHHHhCCCC
Q 003187 631 SG--T----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSK 702 (840)
Q Consensus 631 gd--~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS--~Ns~~a~~LlrL~~lt~~~~ 702 (840)
.+ + ++|+.|+++++.+.++- +.|++...... .+..++ -...++++-..|++.||+
T Consensus 171 k~~d~~~A~~~L~~A~~~~~~a~~~~-----~~~~~~~~~~~----------~~~Y~~~~~~De~~wAA~~Ly~aTg~-- 233 (444)
T PF00759_consen 171 KDFDPAYAAQCLKAAKEAYAFAKKNP-----GVYSDNPQPNG----------GGFYNSSGYEDELAWAAAELYRATGD-- 233 (444)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHST-----THGGGTSTCTT----------TTTSHCS-SHHHHHHHHHHHHHHHT---
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCC-----CcccCCccccc----------CCcccCCCcccHHHHHHHHHHHhcCc--
Confidence 44 4 56788888888776532 33433221100 011122 233577788889999996
Q ss_pred chHHHHHHHHHHHHH
Q 003187 703 SDYYRQNAEHSLAVF 717 (840)
Q Consensus 703 ~~~y~~~A~~~l~~~ 717 (840)
+.|++.++.....+
T Consensus 234 -~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 234 -ESYLDYAKEYYDDL 247 (444)
T ss_dssp -HHHHHHHHHHCCTS
T ss_pred -HHHHHHHHHhHHhh
Confidence 78999988665443
No 290
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=60.55 E-value=1.1e+02 Score=34.57 Aligned_cols=131 Identities=13% Similarity=0.086 Sum_probs=80.7
Q ss_pred HHHHHHHHHhccccCCCeEEEeecCCCCC-C---CCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccc
Q 003187 580 ESAASFIRRHLYDEQTHRLQHSFRNGPSK-A---PGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDR 653 (840)
Q Consensus 580 ~~~~~fl~~~l~d~~~G~l~~~~~~g~~~-~---~~~leDyA~~i~aLl~LYeaTg--d~~yL~~A~~L~~~~~~~F~D~ 653 (840)
.++..|.++|+..+.+|.+-|.+..+... . ..=.|+=-.++.||+...+..| ...|+..|+.+...+.++-..
T Consensus 75 d~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~~~~y~~~A~~~~~~i~~~~v~- 153 (342)
T PF01270_consen 75 DRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDGAYNYLAEALAIINAIKTHEVN- 153 (342)
T ss_dssp HHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHEE-
T ss_pred HHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHhheeC-
Confidence 36788889999855667777776543321 1 1234555788999999999999 558999999999998777654
Q ss_pred cCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003187 654 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 654 ~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i 721 (840)
.|.....+.+.. .. .+..-..-||-- +.-.+..++.++++ ..|.+.++..++.+....
T Consensus 154 -~g~~~llpG~~~---f~-~~~~~~~npSY~--~~pa~~~f~~~~~~---~~W~~v~~~~~~ll~~~~ 211 (342)
T PF01270_consen 154 -PGRYVLLPGDWG---FN-SDDYWTTNPSYF--MPPAFRAFAAATGD---PRWNEVADSSYALLQKAS 211 (342)
T ss_dssp -TTEEEECSSSSS---CB-TTSEEEEEGGGS---HHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred -CCceEEeccccc---cC-CCCceEeChhhc--cHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhc
Confidence 343332222110 00 000000123332 23446688899986 678888887777655443
No 291
>PLN00119 endoglucanase
Probab=60.41 E-value=3.3e+02 Score=32.54 Aligned_cols=119 Identities=12% Similarity=0.034 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCC-----------CCC---------cchH-HHHHHHHHHHHHHcC
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------PGF---------LDDY-AFLISGLLDLYEFGS 631 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~-----------~~~---------leDy-A~~i~aLl~LYeaTg 631 (840)
+.+|+.++-..|||++-.- ..+.|++...+|..+. ++. -.|- +.++.+|...+.+-.
T Consensus 117 ~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk 194 (489)
T PLN00119 117 GNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFA 194 (489)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 6799999999999998753 3466777654432211 011 0122 334444445555544
Q ss_pred --CHH----HHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCC--hHHHHHHHHHHHHHHhCCCCc
Q 003187 632 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSKS 703 (840)
Q Consensus 632 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS--~Ns~~a~~LlrL~~lt~~~~~ 703 (840)
|+. .|+.|+++++.++++ .|. |....... .+..+| -.-.++++-..|++.||+
T Consensus 195 ~~D~~yA~~lL~~Ak~~y~fA~~~-----~g~-y~~~~~~~----------~g~Y~ss~~~DEl~WAAawLY~aTgd--- 255 (489)
T PLN00119 195 PSDPAYASILIGHAKDLFEFAKAH-----PGL-YQNSIPNA----------GGFYASSGYEDELLWAAAWLHRATND--- 255 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCc-ccCCCCCC----------CCCCCCCchhhHHHHHHHHHHHHhCC---
Confidence 444 478888888877653 122 21110000 001111 123577788889999996
Q ss_pred hHHHHHHHH
Q 003187 704 DYYRQNAEH 712 (840)
Q Consensus 704 ~~y~~~A~~ 712 (840)
..|.+.+..
T Consensus 256 ~~Yl~~~~~ 264 (489)
T PLN00119 256 QTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHh
Confidence 778877653
No 292
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=59.61 E-value=69 Score=36.80 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=70.4
Q ss_pred CCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC-e-EEEeecCCCC
Q 003187 530 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH-R-LQHSFRNGPS 607 (840)
Q Consensus 530 ~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G-~-l~~~~~~g~~ 607 (840)
..|..-=|+---.+.+||.+|++.-++ ++|++.|+.++.-|.++...+..| + ++.--..|-.
T Consensus 108 v~D~NsASDGDl~IA~ALl~A~~~W~~----------------~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~ 171 (376)
T PRK11097 108 VLDANSASDADLWIAYSLLEAGRLWKE----------------PRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFA 171 (376)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccccCCCceeecccccccc
Confidence 457676777778899999999999987 789999999999999987765444 1 2111111100
Q ss_pred CCCCC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003187 608 KAPGF-LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 650 (840)
Q Consensus 608 ~~~~~-leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F 650 (840)
..... ++.-=++...+-.+++++++..|.+.+..-.+.+.+.-
T Consensus 172 ~~~~~~~NPSY~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~a 215 (376)
T PRK11097 172 DDGSWRLNPSYLPPQLLRRFARFLPGGPWAALAATNARLLLETA 215 (376)
T ss_pred CCCCCeECcccccHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 00111 22222344445556788999999999988888877643
No 293
>PLN02308 endoglucanase
Probab=58.62 E-value=3.9e+02 Score=31.99 Aligned_cols=121 Identities=10% Similarity=-0.032 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCC--CCc-------------------chHHHHHHHHHHHHHHcC
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--GFL-------------------DDYAFLISGLLDLYEFGS 631 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~--~~l-------------------eDyA~~i~aLl~LYeaTg 631 (840)
+..++.++-..||+++-.. .+|.++|...++..+.. +.+ +--+.++.+|...+.+..
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~ 189 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFR 189 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhcc
Confidence 5789999999999997653 35788887655422110 001 112345556666666654
Q ss_pred --CHH----HHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCC---hHHHHHHHHHHHHHHhCCCC
Q 003187 632 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVINLVRLASIVAGSK 702 (840)
Q Consensus 632 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS---~Ns~~a~~LlrL~~lt~~~~ 702 (840)
|+. .|+.|+++++.++++ .|.|....... ..+...+ -+-.++++-..|+..||+
T Consensus 190 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~~~----------~~~~Y~~~s~~~DEl~WAAawLy~ATgd-- 252 (492)
T PLN02308 190 KRDPAYSRLLLDRAVRVFAFADKY-----RGAYSSSLHAA----------VCPFYCDFNGYQDELLWGAAWLHKASRR-- 252 (492)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHc-----CCcccCCCCcc----------cCCCcCCCCcccHHHHHHHHHHHHHhCC--
Confidence 554 477888888777652 23332211000 0011112 134678888889999996
Q ss_pred chHHHHHHHHH
Q 003187 703 SDYYRQNAEHS 713 (840)
Q Consensus 703 ~~~y~~~A~~~ 713 (840)
..|.+.+...
T Consensus 253 -~~Yl~~~~~~ 262 (492)
T PLN02308 253 -REYREYIVKN 262 (492)
T ss_pred -HHHHHHHHHH
Confidence 7888876553
No 294
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=57.84 E-value=14 Score=37.42 Aligned_cols=56 Identities=29% Similarity=0.463 Sum_probs=35.7
Q ss_pred HHhcCCCEEEEEeccCC-hhhhhhhhcccCCHHHHHHHhc-----CeEEEEEcCC-CCccHHHHHH
Q 003187 134 ARKRDVPIFLSIGYSTC-HWCHVMEVESFEDEGVAKLLND-----WFVSIKVDRE-ERPDVDKVYM 192 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC-~wC~~me~etf~d~eVa~~ln~-----~FV~vkvD~e-e~pd~~~~y~ 192 (840)
+.-.||+++|.|++..| .-|-.+-.. =.++.+.|.+ .||.|-+|-+ +.|+.-+.|.
T Consensus 48 ~~~~Gk~~lv~F~yT~CpdvCp~~l~~---l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 48 DDLKGKWVLVFFGYTRCPDVCPTTLAN---LSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp GGGTTSEEEEEEE-TTSSSHHHHHHHH---HHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred HHhCCCeEEEEEEEcCCCccCHHHHHH---HHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHH
Confidence 33469999999999999 568866442 2333444432 4888888865 3566666663
No 295
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=56.90 E-value=39 Score=38.58 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHHHHHHccCChHHHH----HHHHHHHHHHH
Q 003187 377 KMLYDQGQLANVYLDAFSLTKDVFYSY----ICRDILDYLRR 414 (840)
Q Consensus 377 KMLYDNA~Ll~~ya~Ay~~tgd~~y~~----~A~~t~~fl~r 414 (840)
.+.-.|...|..-.+.|+.|||..|++ .++++++|+++
T Consensus 96 ~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~ 137 (365)
T PF04685_consen 96 AWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS 137 (365)
T ss_dssp ---------------------------EHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHHHHHHHHh
Confidence 344347777777888999999988764 78999999998
No 296
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=56.37 E-value=41 Score=33.33 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCC-EEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC--CC
Q 003187 128 EEAFAEARKRDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG--GW 204 (840)
Q Consensus 128 ~eAl~~Ak~e~Kp-I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~--G~ 204 (840)
.+-+.+.-..++| +++.|..........+.+.. .++++-....++.+.+|.+..+++.+.+ |.. .+
T Consensus 84 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~~~~~~~~~~--------~i~~~~~ 152 (184)
T PF13848_consen 84 PENFEKLFSSPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDADDFPRLLKYF--------GIDEDDL 152 (184)
T ss_dssp TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETTTTHHHHHHT--------TTTTSSS
T ss_pred hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehHHhHHHHHHc--------CCCCccC
Confidence 4467777777877 66666555566665554422 5677666677899999998666544433 554 89
Q ss_pred CcEEEECCCCce
Q 003187 205 PLSVFLSPDLKP 216 (840)
Q Consensus 205 P~~vfl~p~g~~ 216 (840)
|..+++++....
T Consensus 153 P~~vi~~~~~~~ 164 (184)
T PF13848_consen 153 PALVIFDSNKGK 164 (184)
T ss_dssp SEEEEEETTTSE
T ss_pred CEEEEEECCCCc
Confidence 999999976544
No 297
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=55.98 E-value=42 Score=28.21 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=37.0
Q ss_pred EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 145 IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 145 ~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+++.+|++|++..- +.+..+-.|-.+.||....+ ..|. ..+..+..|+.+ +.||..++.
T Consensus 4 y~~~~~p~~~rv~~-------~L~~~gl~~e~~~v~~~~~~---~~~~----~~np~~~vP~L~--~~~g~~l~e 62 (71)
T cd03060 4 YSFRRCPYAMRARM-------ALLLAGITVELREVELKNKP---AEML----AASPKGTVPVLV--LGNGTVIEE 62 (71)
T ss_pred EecCCCcHHHHHHH-------HHHHcCCCcEEEEeCCCCCC---HHHH----HHCCCCCCCEEE--ECCCcEEec
Confidence 68899999998642 22333345777788875433 2232 235778899885 446776654
No 298
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=55.66 E-value=23 Score=31.08 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=38.7
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~l-n~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p 212 (840)
++.++.+.||-|..++. .+.++. +..|....||+++.|++...| | .-.|...+-++
T Consensus 2 l~l~~k~~C~LC~~a~~------~L~~~~~~~~~~l~~vDI~~d~~l~~~Y--------~-~~IPVl~~~~~ 58 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKE------ILEEVAAEFPFELEEVDIDEDPELFEKY--------G-YRIPVLHIDGI 58 (81)
T ss_dssp EEEEE-SSSHHHHHHHH------HHHHCCTTSTCEEEEEETTTTHHHHHHS--------C-TSTSEEEETT-
T ss_pred EEEEcCCCCChHHHHHH------HHHHHHhhcCceEEEEECCCCHHHHHHh--------c-CCCCEEEEcCc
Confidence 35589999999999864 333332 345889999999888877776 3 36798665543
No 299
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=55.26 E-value=75 Score=39.08 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=62.0
Q ss_pred cCCCCCCCCC--CC-CCCh----hHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCC
Q 003187 297 DSRFGGFGSA--PK-FPRP----VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDER 369 (840)
Q Consensus 297 D~~~GGfg~a--PK-FP~~----~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~ 369 (840)
+...||||-. +. +|-. ..|..|+... ..+ ......+.+-+..=|-.|.. -+|||.-|..+..
T Consensus 362 ~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~--~~~---~~~~~~~i~ra~~wLl~~Qn------~dGgw~af~~~~~ 430 (635)
T TIGR01507 362 NLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLR--LPD---ERRRRDAMTKAFRWIAGMQS------SNGGWGAFDVDNT 430 (635)
T ss_pred CCCCCccCCCCCCCCCCCchhHHHHHHHHHHcC--CCc---cccchHHHHHHHHHHHHhcC------CCCCEecccCCcc
Confidence 4568998875 66 4553 2333333321 000 00112344445555555655 5799976655443
Q ss_pred CC----CCCCc---chH-----HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEe
Q 003187 370 WH----VPHFE---KML-----YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 370 W~----vPHFE---KML-----YDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
.. +| |. .|+ -+-|..+.+|... +...-...++++++||++ ++.++||+|.
T Consensus 431 ~~~l~~~~-f~d~~~~~D~~~~d~Ta~~l~al~~~----g~~~~~~~i~rav~~L~~-~Q~~dG~W~g 492 (635)
T TIGR01507 431 SDLLNHIP-FCDFGAVTDPPTADVTARVLECLGSF----GYDDAWPVIERAVEYLKR-EQEPDGSWFG 492 (635)
T ss_pred hhHHhcCC-ccccccccCCCCccHHHHHHHHHHHh----CCCchhHHHHHHHHHHHH-ccCCCCCCcc
Confidence 22 33 32 222 1257777777753 221126788999999986 7889999875
No 300
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=55.13 E-value=82 Score=38.79 Aligned_cols=99 Identities=14% Similarity=0.223 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhc---cccCCCeEEEe-----ecCCCCC----------CCCCcchHHHHHHHHHHHHHHcC---
Q 003187 573 KEYMEVAESAASFIRRHL---YDEQTHRLQHS-----FRNGPSK----------APGFLDDYAFLISGLLDLYEFGS--- 631 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l---~d~~~G~l~~~-----~~~g~~~----------~~~~leDyA~~i~aLl~LYeaTg--- 631 (840)
.+....+..+.+++...+ .+..+.++.+. |.|+... .....+=+.+++.+++.+.+..+
T Consensus 362 ~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~ 441 (641)
T COG3408 362 RELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEE 441 (641)
T ss_pred HHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccc
Confidence 567788888888888766 22333344442 3332110 11223334557888888888888
Q ss_pred -CHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccc
Q 003187 632 -GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 673 (840)
Q Consensus 632 -d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k 673 (840)
-.+|.+.|+++.+.+.+.||.+ .+||+...+++....|+.
T Consensus 442 ~~~~~~~~a~~l~~~F~~~fw~~--~~f~dl~~~~~~~~~r~~ 482 (641)
T COG3408 442 DAARLEKIARRLKESFEAKFWNP--TGFYDLALDDKDVPIRPN 482 (641)
T ss_pred cHHHHHHHHHHHHHHHHHHhhCc--cchHhhhccCCCcccCcc
Confidence 5678899999999999999976 568887766655555543
No 301
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=53.85 E-value=22 Score=37.23 Aligned_cols=57 Identities=32% Similarity=0.446 Sum_probs=37.5
Q ss_pred HHHHhcCCCEEEEEeccCChh-hhhhhhcccCCHHHHHHHh----c--CeEEEEEcCCC-CccHHHHH
Q 003187 132 AEARKRDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLN----D--WFVSIKVDREE-RPDVDKVY 191 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~w-C~~me~etf~d~eVa~~ln----~--~FV~vkvD~ee-~pd~~~~y 191 (840)
....-+|||.+|.|++..|+- |..+-. +-..+.+.+. . ++|.|.||-+. .|+.-+.|
T Consensus 61 ~~~~l~Gk~~lv~FgyT~CpdVCP~~l~---~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 61 TLKDLKGKPSLVFFGYTHCPDVCPTTLA---ELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred eccccCCCEEEEEeecCCCCccChHHHH---HHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 333447999999999999985 887754 3344444444 2 37888888653 35555555
No 302
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=52.64 E-value=2.8e+02 Score=33.28 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=40.0
Q ss_pred hhhcHHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE
Q 003187 535 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH 600 (840)
Q Consensus 535 iltsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~ 600 (840)
|=++-|+++.. .|++.++.+|+... ...|.+.|.+..+.|.+.|||++.|.++-
T Consensus 305 ipVDLNa~L~~~e~~LA~~a~~lG~~~~------------a~~~~~~A~~~~~aI~~~lWdee~g~~~D 361 (512)
T PF01204_consen 305 IPVDLNAILYRNEKDLAEFAELLGDQEK------------AEEYRQRAEERKEAINQYLWDEEDGFYYD 361 (512)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHTT-HHH------------HHHHHHHHHHHHHHHHHHTEETTTTEE--
T ss_pred cCchHHHHHHHHHHHHHHHHHHcCchhH------------HHHHHHHHHHHHHHHHHhCccCCCCeEEe
Confidence 34467898866 78888888886321 25799999999999999999988876554
No 303
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=51.94 E-value=2.3e+02 Score=33.54 Aligned_cols=195 Identities=16% Similarity=0.092 Sum_probs=92.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhcCCC--CCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHH
Q 003187 498 ASKLGMPLEKYLNILGECRRKLFDVRSKRP--RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEY 575 (840)
Q Consensus 498 a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~--~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~y 575 (840)
+..|..+.+.+.++.+.++..++..-..-+ =|.+||+ ..|.|=+......++-.+++ .
T Consensus 109 ~g~F~~sd~~ln~i~~~~~~T~~~n~~~~~~Dcp~RdER--~~w~GD~~~~~~~~~~~~~~----------------~-- 168 (509)
T PF05592_consen 109 AGSFSCSDPLLNRIWEMSRRTLRSNMQDVFTDCPKRDER--LGWTGDARVSALTAYYSFGD----------------A-- 168 (509)
T ss_dssp --EEEES-HHHHHHHHHHHHHHHHTBSSSB-SBTTT-T-----BHHHHHHHHHHHHCCT------------------H--
T ss_pred cCceecCcHHHHHHHHHHHHHHHhhCCCCceECcchhhh--cCCcchHHHHHHHHHHhCCc----------------H--
Confidence 445666778888888888888877443322 3777666 34555443222222223333 2
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccc
Q 003187 576 MEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA-FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 654 (840)
Q Consensus 576 le~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA-~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~ 654 (840)
...++..+.+...... +|.+....-... ......-+|+ +.+..+-++|..|||.++++..-.-.+...+.+....
T Consensus 169 -~l~~~~l~~~~~~q~~--~G~~p~~~P~~~-~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~ 244 (509)
T PF05592_consen 169 -ALYRKWLRDFADSQRP--DGLLPSVAPSYG-GGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRV 244 (509)
T ss_dssp -HHHHHHHHHHHGGTTT--STT-SSBSS----SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB
T ss_pred -HHHHHHHHHHHHhhcc--cCCceEEecccC-CCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 2444555555544332 465533211100 1122233443 6788999999999999998766555555555443222
Q ss_pred CC------ccccCCCCCCccccccccCCCCCCCC---hHHHHH---HHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHH
Q 003187 655 GG------GYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSV---INLVRLASIVAGS-KSDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 655 ~G------gyf~t~~~~~~l~~R~k~~~D~a~PS---~Ns~~a---~~LlrL~~lt~~~-~~~~y~~~A~~~l~~~~~~i 721 (840)
.. .+-..++..+. ...+...|. .|+..+ ..+..|+.+.|++ +...|+++|+++-+++...+
T Consensus 245 ~~~~~~~~~~~~~DW~~~~------~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~ 318 (509)
T PF05592_consen 245 DDGLDGLPGWGFGDWLAPG------NDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHF 318 (509)
T ss_dssp -TSSB-CCSB--S-SS----------TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccccCCCCCceeecCCcc------CcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 01111111000 011111221 444433 3466788888852 12468888887777776554
Q ss_pred H
Q 003187 722 K 722 (840)
Q Consensus 722 ~ 722 (840)
-
T Consensus 319 ~ 319 (509)
T PF05592_consen 319 W 319 (509)
T ss_dssp E
T ss_pred c
Confidence 3
No 304
>PLN02909 Endoglucanase
Probab=50.96 E-value=5e+02 Score=31.01 Aligned_cols=117 Identities=10% Similarity=-0.041 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCC--CCc-------------------chHHHHHHHHHHHHHHc
Q 003187 572 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--GFL-------------------DDYAFLISGLLDLYEFG 630 (840)
Q Consensus 572 ~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~--~~l-------------------eDyA~~i~aLl~LYeaT 630 (840)
.+.+|+.++-..+||++-.. ..|.+++...++..+.. +.+ +--+.++.+|...+.+.
T Consensus 119 ~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vf 196 (486)
T PLN02909 119 LENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKTPRTVLEIDEKTPGTEIAAETAAAMAASSMVF 196 (486)
T ss_pred hHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccCCceeEecCCCCCCcHHHHHHHHHHHHHHHhh
Confidence 48899999999999998653 35788887544321110 111 11234444555555554
Q ss_pred C--CHH----HHHHHHHHHHHHHHHc--ccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCC
Q 003187 631 S--GTK----WLVWAIELQNTQDELF--LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSK 702 (840)
Q Consensus 631 g--d~~----yL~~A~~L~~~~~~~F--~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~ 702 (840)
. |+. .|+.|+++++.++++= ++. ..+||.... +-+-.++++-..|++.||+
T Consensus 197 k~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~-~~~~y~s~s------------------~y~DEl~WAAawLy~aTgd-- 255 (486)
T PLN02909 197 RHVDHKYSRRLLNKAKLLFKFAKAHKGTYDG-ECPFYCSYS------------------GYNDELLWAATWLYKATKK-- 255 (486)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCCcCC-CCCccccCC------------------CcchHHHHHHHHHHHHhCC--
Confidence 3 444 5888888888876530 000 011221100 0123677777788999986
Q ss_pred chHHHHHHHH
Q 003187 703 SDYYRQNAEH 712 (840)
Q Consensus 703 ~~~y~~~A~~ 712 (840)
..|.+.+..
T Consensus 256 -~~Yl~~~~~ 264 (486)
T PLN02909 256 -QMYLKYIKH 264 (486)
T ss_pred -HHHHHHHHh
Confidence 678876653
No 305
>PRK13271 treA trehalase; Provisional
Probab=50.71 E-value=4.2e+02 Score=32.29 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=64.7
Q ss_pred hhhcHHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-cCCCCCCC
Q 003187 535 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP 610 (840)
Q Consensus 535 iltsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~-~~g~~~~~ 610 (840)
|-++-|++++. .|++.++.+|+.. ...+|.+.|.+..+.|.+.||+++.|.++-.. ++++
T Consensus 337 iPVDLNALLy~ae~~LA~la~~lGd~~------------~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~---- 400 (569)
T PRK13271 337 VPVDLNALMFKMEKILARASKAAGDNA------------MANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHK---- 400 (569)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhCChh------------hHHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCC----
Confidence 44578899876 4556666676521 12468999999999999999998766554321 2222
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccC
Q 003187 611 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 661 (840)
Q Consensus 611 ~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 661 (840)
.-+ .+.+.+++=||-=.-+ .+.|.++.+.+..+|..+ ||.-.+
T Consensus 401 --~r~-~~saa~f~PLwag~a~---~~qA~~Vv~~l~~~Ll~p--gGLpTt 443 (569)
T PRK13271 401 --VRN-QLTAAALFPLYVNAAA---KDRANKVAAATKTHLLQP--GGLNTT 443 (569)
T ss_pred --Eee-chhHHHHHhhhcCCCC---HHHHHHHHHHHHHhcCCC--CCccCC
Confidence 223 3456677777642223 356777887777777653 555443
No 306
>PRK13270 treF trehalase; Provisional
Probab=50.04 E-value=5.2e+02 Score=31.42 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=75.8
Q ss_pred hhcHHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCCCCC
Q 003187 536 IVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPG 611 (840)
Q Consensus 536 ltsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~-~~~g~~~~~~ 611 (840)
-++-|++++. .|++.++.+|+.. ...+|.+.|.+..+.|.+.||+++.|.++.. .+.++
T Consensus 348 pVDLNaiL~~~e~~LA~~a~~lG~~~------------~a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~----- 410 (549)
T PRK13270 348 PIDLNAFLYKLESAIANISALKGEKE------------TEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQ----- 410 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCChH------------HHHHHHHHHHHHHHHHHHhccCcccCeEEecccccCc-----
Confidence 3467888866 5666677777521 1256889999999999999999887755432 12222
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCC--CCChHHHHHH
Q 003187 612 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA--EPSGNSVSVI 689 (840)
Q Consensus 612 ~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a--~PS~Ns~~a~ 689 (840)
. + .+.+.+++=|+.=..++ +.|..+.+.+..+|.. .||.-.+.. .....-|++ =|-.+-+++.
T Consensus 411 -~-~-~~s~a~f~PLwaG~a~~---~qa~~l~~~l~~~ll~--pGGl~tS~~-------~sgqQWD~PN~WaPlqwmiie 475 (549)
T PRK13270 411 -L-A-LFSAAAIVPLYVGMANH---EQADRLANAVRSRLLT--PGGILASEY-------ETGEQWDKPNGWAPLQWMAIQ 475 (549)
T ss_pred -c-c-cccHHHHHHHHhCCCCH---HHHHHHHHHHHHhccc--CCCcCCCCC-------CCcccCCCCCCCccHHHHHHH
Confidence 1 2 25677788887533333 4577777777666654 344433221 111222332 3455566777
Q ss_pred HHHHHH
Q 003187 690 NLVRLA 695 (840)
Q Consensus 690 ~LlrL~ 695 (840)
.|.+.+
T Consensus 476 GL~ryG 481 (549)
T PRK13270 476 GFKMYG 481 (549)
T ss_pred HHHHcC
Confidence 776644
No 307
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=49.71 E-value=54 Score=35.76 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 003187 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (840)
Q Consensus 336 ~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~ 415 (840)
++.+.+...+..+.. +-+-+|||-- |...+-+--.+.-|..+.++.+|.... +......+++++||.+
T Consensus 46 ~~~~~l~~g~~~~~~---~q~~dGsf~~------w~~~~~~~~~wlTa~v~~~L~~a~~~~--~v~~~~i~ra~~wL~~- 113 (292)
T cd02897 46 KALGFLRTGYQRQLT---YKHSDGSYSA------FGESDKSGSTWLTAFVLKSFAQARPFI--YIDENVLQQALTWLSS- 113 (292)
T ss_pred HHHHHHHHHHHHHHh---ccCCCCCeec------ccCCCCCcchhhHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHH-
Confidence 334444444443333 5566899853 321112446677999999999987432 2335789999999996
Q ss_pred ccCCCCceE
Q 003187 416 MIGPGGEIF 424 (840)
Q Consensus 416 m~~~~Ggfy 424 (840)
++.++|||.
T Consensus 114 ~Q~~dG~f~ 122 (292)
T cd02897 114 HQKSNGCFR 122 (292)
T ss_pred hcCCCCCCC
Confidence 578899985
No 308
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=48.33 E-value=2.7e+02 Score=28.75 Aligned_cols=140 Identities=8% Similarity=0.053 Sum_probs=90.9
Q ss_pred ChhhhcccCC-Ccc---CccchHHHHHHHHhcCCCEEEEEecc--CChhhhhhhhccc---CCHHHHHHHhcCeEEEEEc
Q 003187 110 SPYLLQHAHN-PVD---WFAWGEEAFAEARKRDVPIFLSIGYS--TCHWCHVMEVESF---EDEGVAKLLNDWFVSIKVD 180 (840)
Q Consensus 110 SpYL~~ha~~-~v~---W~~~~~eAl~~Ak~e~KpI~l~~g~~--wC~wC~~me~etf---~d~eVa~~ln~~FV~vkvD 180 (840)
-+.|+...+. |+. |+...++-+..|++-+---+|.+++- -|+.=+ ..+| +++++.+.+....+.+++.
T Consensus 15 ~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~~~tr---p~V~~~at~~el~~~l~~~g~~~~~~ 91 (188)
T TIGR00162 15 TDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGKLVEE---PYVYGAATSPELVEELKEHGVKFREP 91 (188)
T ss_pred CCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCCCCCC---CceEEEeCCHHHHHHHHhcCCeeecC
Confidence 4777777777 666 98998999999999998888888773 232211 1122 5889999998666655544
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHH--HcHHHHHHHHHH
Q 003187 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAF 258 (840)
Q Consensus 181 ~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~--~~~~~~~~~a~~ 258 (840)
..----+.......+ ...|.|...++-.- ..|+|- ...=..+|+.|.+... =+-+.+++.|++
T Consensus 92 ~g~i~G~~glLl~~a----~~~gi~ai~L~~e~------p~y~pD-----P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ 156 (188)
T TIGR00162 92 GGGIIGASGLLLGVS----ELEGIPGACLMGET------PGYMID-----PKAAKAVLEVLCKMLSLEVSVEALEERAKE 156 (188)
T ss_pred CCccccHHHHHHHHH----HHCCCCeEEEEEeC------CCCCCC-----hHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 322123333333333 45699998887543 235542 1245666777666664 478899999988
Q ss_pred HHHHHHHHh
Q 003187 259 AIEQLSEAL 267 (840)
Q Consensus 259 ~~~~l~~~~ 267 (840)
+.+.+++..
T Consensus 157 ie~~~~~~~ 165 (188)
T TIGR00162 157 MEKIIAKIK 165 (188)
T ss_pred HHHHHHHHH
Confidence 888777654
No 309
>PLN03009 cellulase
Probab=47.74 E-value=5.6e+02 Score=30.66 Aligned_cols=146 Identities=12% Similarity=0.037 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCC--CCcc----
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--GFLD---- 614 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~--~~le---- 614 (840)
+..++.|+-++..+++. + |. .+.+++|+.++-..|||++...+ .|+++|...++..+.. +.+|
T Consensus 90 a~s~~~L~w~~~~f~d~-----~--~~--~~~~diLdeikw~~D~llkm~~~--~~~~y~qVg~~~~Dh~~W~~Pe~~~~ 158 (495)
T PLN03009 90 AFTTTMLAWSVIEFGDL-----M--PS--SELRNSLVAIRWATDYLLKTVSQ--PNRIFVQVGDPIADHNCWERPEDMDT 158 (495)
T ss_pred HHHHHHHHHHHHHhHhh-----C--Cc--cccHHHHHHHHHHHHHHHHcccC--cCeEEEEeCCCCCCcccCcChhhcCC
Confidence 44445555555555541 1 22 13478999999999999986533 5788887654321100 1111
Q ss_pred --------------h-HHHHHHHHHHHHHHcC--CHHH----HHHHHHHHHHHHHHcccccCCccccCCCCCCccccccc
Q 003187 615 --------------D-YAFLISGLLDLYEFGS--GTKW----LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 673 (840)
Q Consensus 615 --------------D-yA~~i~aLl~LYeaTg--d~~y----L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k 673 (840)
| =+.++.+|...+.+.. |+.| |+.|+++++.++.. .|.|..... +....
T Consensus 159 ~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~~-----~g~y~~~~~-----~~~g~ 228 (495)
T PLN03009 159 PRTVYAVNAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFADMY-----RGAYSDNDD-----IKDGV 228 (495)
T ss_pred CCeEEEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCcc-----ccCcc
Confidence 1 2455555655666544 5555 77888888777642 344432210 00000
Q ss_pred cCCCCCCCC---hHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003187 674 EDHDGAEPS---GNSVSVINLVRLASIVAGSKSDYYRQNAEHS 713 (840)
Q Consensus 674 ~~~D~a~PS---~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~ 713 (840)
. ...+| -+-.++++-..|+..||+ ..|.+.+...
T Consensus 229 ~---~~Y~~~s~~~DE~~WAAawLy~aTgd---~~Yl~~~~~~ 265 (495)
T PLN03009 229 C---PFYCDFDGYQDELLWGAAWLRRASGD---DSYLNYIENN 265 (495)
T ss_pred c---cCcCCcccccHHHHHHHHHHHHHhCC---HHHHHHHHHh
Confidence 0 01223 245788888899999996 7898877643
No 310
>PLN02613 endoglucanase
Probab=46.05 E-value=6e+02 Score=30.48 Aligned_cols=120 Identities=13% Similarity=-0.007 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCC-----------C----------CCcchHHHHHHHHHHHHHHc
Q 003187 572 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------P----------GFLDDYAFLISGLLDLYEFG 630 (840)
Q Consensus 572 ~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~-----------~----------~~leDyA~~i~aLl~LYeaT 630 (840)
.+.+|+.++-..+||++-... .+.++....+|..+. + .-.+--+.++.+|...+.+-
T Consensus 111 ~~d~ldeikw~lD~llkm~~~--~~~~~~QVGdg~~dH~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vf 188 (498)
T PLN02613 111 LGYLRSAIRWGTDFILRAHTS--PTTLYTQVGDGNADHQCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVF 188 (498)
T ss_pred chHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCccccccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhc
Confidence 378999999999999976543 356666544442110 0 11122234555555555554
Q ss_pred C--CHH----HHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCch
Q 003187 631 S--GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSD 704 (840)
Q Consensus 631 g--d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~ 704 (840)
. |+. .|+.|+++++...++ .|.|.... +.+.+ .=+-.-.++++-..|+..||+ .
T Consensus 189 k~~D~~yA~~~L~~Ak~ly~~a~~~-----~g~y~~~~-----------~~y~s-~s~~~DEl~WAAawLy~aTGd---~ 248 (498)
T PLN02613 189 KDVDSSYSSKLLNHARSLFEFADKY-----RGSYQASC-----------PFYCS-YSGYQDELLWAAAWLYKATGE---K 248 (498)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhC-----CCCcCCCC-----------Ccccc-cCccchHHHHHHHHHHHHhCC---H
Confidence 4 444 488888888887653 23232210 00000 000112567777789999996 7
Q ss_pred HHHHHHHHH
Q 003187 705 YYRQNAEHS 713 (840)
Q Consensus 705 ~y~~~A~~~ 713 (840)
.|.+.+...
T Consensus 249 ~Yl~~~~~~ 257 (498)
T PLN02613 249 KYLNYVISN 257 (498)
T ss_pred HHHHHHHhc
Confidence 898877653
No 311
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=46.00 E-value=3.4e+02 Score=33.06 Aligned_cols=138 Identities=11% Similarity=0.086 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeecC-CCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccC
Q 003187 577 EVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 655 (840)
Q Consensus 577 e~A~~~~~fl~~~l~d~~~G~l~~~~~~-g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~ 655 (840)
+.|+++.....+.+. +|.+-..+.+ |....-+..|---+++.++-++++.|+|..+++.-...+..+++.+.+..
T Consensus 313 ~~A~~iL~~fa~~~~---~GliPN~~~~~g~~p~YntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~- 388 (575)
T TIGR01561 313 DEAKEAILKFANLCK---RGLIPNNFIAFGGDPIYNGVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGN- 388 (575)
T ss_pred HHHHHHHHHHHHHhH---CCCCCCccCCCCCCccCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC-
Confidence 455565555544442 3544443322 22222245666678999999999999999888655544444455444321
Q ss_pred CccccCCCCCCccc-----cccccCCC---------CCCCChHHHHHHHHHH---HHHHhCCCCchHHHHHHHHHHHHHH
Q 003187 656 GGYFNTTGEDPSVL-----LRVKEDHD---------GAEPSGNSVSVINLVR---LASIVAGSKSDYYRQNAEHSLAVFE 718 (840)
Q Consensus 656 Ggyf~t~~~~~~l~-----~R~k~~~D---------~a~PS~Ns~~a~~Llr---L~~lt~~~~~~~y~~~A~~~l~~~~ 718 (840)
+|-...+.+ .++ +.+++..+ ++.---|+.+..+|.. |+...|+. ...|.+.|+++-+.|.
T Consensus 389 -~~~i~~d~d-GLi~~g~~lTWMDa~~g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~-a~~y~~~A~~lk~~F~ 465 (575)
T TIGR01561 389 -DFAIGMDND-LIFHKGAPLTWMDAKVDERAVTPRAGAACEINALWYNALKTAEFLGNELGED-AESLEEKAAGVAKNFA 465 (575)
T ss_pred -CcEEEECCC-ccEeCCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHH
Confidence 111100011 111 11333222 2222356666666665 45555542 2557777877777765
Q ss_pred HHH
Q 003187 719 TRL 721 (840)
Q Consensus 719 ~~i 721 (840)
...
T Consensus 466 ~~F 468 (575)
T TIGR01561 466 EKF 468 (575)
T ss_pred Hhc
Confidence 443
No 312
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=45.64 E-value=32 Score=27.18 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=26.2
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFD 521 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~ 521 (840)
+..++|+.+|++.+.+......+.++|.+
T Consensus 22 t~~eIa~~lg~s~~~V~~~~~~al~kLR~ 50 (50)
T PF04545_consen 22 TLEEIAERLGISRSTVRRILKRALKKLRK 50 (50)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999999863
No 313
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=45.31 E-value=14 Score=36.49 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.1
Q ss_pred cCCCEEEEEeccCChhhhhhhhcc
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVES 160 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~et 160 (840)
++++.++.|+-..|+||+.|+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~ 37 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPIL 37 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHH
Confidence 678899999999999999999644
No 314
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=44.84 E-value=45 Score=28.36 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=35.2
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC-CCceeccc
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP-DLKPLMGG 220 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p-~g~~~~~~ 220 (840)
-+++..|++|++... +....+=.|..+.+|....+++ ...+.+..|+.++-+. +|++++.+
T Consensus 4 Ly~~~~~p~c~kv~~-------~L~~~gi~y~~~~~~~~~~~~~---------~~~~~~~vP~l~~~~~~~~~~l~eS 65 (77)
T cd03040 4 LYQYKTCPFCCKVRA-------FLDYHGIPYEVVEVNPVSRKEI---------KWSSYKKVPILRVESGGDGQQLVDS 65 (77)
T ss_pred EEEcCCCHHHHHHHH-------HHHHCCCceEEEECCchhHHHH---------HHhCCCccCEEEECCCCCccEEEcH
Confidence 378899999999762 2222333455555543322221 1247788998875432 46677653
No 315
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=44.61 E-value=2.2e+02 Score=36.12 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=43.3
Q ss_pred hhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe
Q 003187 536 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 601 (840)
Q Consensus 536 ltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~ 601 (840)
+|+|=+++...+++.+..++.... ..+|.+.+..+.+.|.+.+||+++|.++-.
T Consensus 560 l~sWMa~~a~~M~~IA~~L~~~d~------------~~ef~~~~~~i~~~l~~~hWdeedgfYyD~ 613 (801)
T PF03200_consen 560 LTSWMAFFALNMARIALELGKEDD------------AYEFFEHFEYISDALNKLHWDEEDGFYYDV 613 (801)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHHHHHhcCCcccCceeee
Confidence 678999999999999999986211 135779999999999999999988755443
No 316
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=41.94 E-value=78 Score=26.13 Aligned_cols=63 Identities=11% Similarity=-0.043 Sum_probs=35.7
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
-++.++|++|+++.- +.+..+-.|-.+.+|..+.......| ..++..+.+|+.+. ++|..++.
T Consensus 3 Ly~~~~s~~~~~~~~-------~L~~~~l~~~~~~v~~~~~~~~~~~~----~~~~p~~~vP~l~~--~~~~~l~e 65 (74)
T cd03051 3 LYDSPTAPNPRRVRI-------FLAEKGIDVPLVTVDLAAGEQRSPEF----LAKNPAGTVPVLEL--DDGTVITE 65 (74)
T ss_pred EEeCCCCcchHHHHH-------HHHHcCCCceEEEeecccCccCCHHH----HhhCCCCCCCEEEe--CCCCEEec
Confidence 367789999988753 12233335666677754321111223 23456788898864 45666543
No 317
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=40.76 E-value=2.3e+02 Score=31.16 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEE
Q 003187 283 NALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (840)
Q Consensus 283 ~~~~~~~~~l~~~~D~~~GGfg~aPKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~ 362 (840)
..+.+++..|.+..++ .+.+..+.++.+.....+ .+ ...-+..-|..|+. .|. ++|..
T Consensus 170 ~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~-------~~-~~~~a~~~L~~~~~---~d~-~~~~~ 227 (297)
T cd02896 170 QSIRKAISYLENQLPN----------LQRPYALAITAYALALAD-------SP-LSHAANRKLLSLAK---RDG-NGWYW 227 (297)
T ss_pred HHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcC-------Ch-hhHHHHHHHHHHhh---hCC-Cccee
Confidence 3567778888876654 233444444444433322 11 22334444666653 222 12222
Q ss_pred EEecCCCCCCCCCc-chHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeecc
Q 003187 363 RYSVDERWHVPHFE-KMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 428 (840)
Q Consensus 363 RYsvD~~W~vPHFE-KMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~D 428 (840)
-.+.+..|..+.-. .-+---|..|.++... ++. ..|..++.||.+. ++.+|||.|++|
T Consensus 228 ~~~~~~~~~~~~~~~~~vE~TAYALLall~~----~~~---~~a~~iv~WL~~q-r~~~Ggf~sTQd 286 (297)
T cd02896 228 WTIDSPYWPVPGPSAITVETTAYALLALLKL----GDI---EYANPIARWLTEQ-RNYGGGFGSTQD 286 (297)
T ss_pred ccCcCccCCCCCCchhhhHHHHHHHHHHHhc----CCc---hhHHHHHHHHHhc-CCCCCCeehHHH
Confidence 12344455433211 1121233344444433 332 3688999999985 466899999886
No 318
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=40.68 E-value=15 Score=39.72 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=40.7
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
..|||.++.+|+.||+.|-.. += .+...|.+ +| .++-+.....| .-...|+.+|..-.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~-sW-----~L~~ALsrfGn~-~l~~~~S~~~d-------------~~pn~Ptl~F~~~~ 115 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAE-SW-----ALYIALSRFGNF-SLEYHYSDPYD-------------NYPNTPTLIFNNYT 115 (249)
T ss_pred CCCeeEEEEEecccCccchhh-HH-----HHHHHHHhcCCe-eeEEeecCccc-------------CCCCCCeEEEecCc
Confidence 679999999999999999763 21 34455654 45 66666553322 23579999998874
Q ss_pred C
Q 003187 214 L 214 (840)
Q Consensus 214 g 214 (840)
.
T Consensus 116 ~ 116 (249)
T PF06053_consen 116 P 116 (249)
T ss_pred C
Confidence 3
No 319
>PLN02175 endoglucanase
Probab=40.55 E-value=7.1e+02 Score=29.77 Aligned_cols=121 Identities=12% Similarity=-0.009 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCC--CCc-------------------chHHHHHHHHHHHHHHcC
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--GFL-------------------DDYAFLISGLLDLYEFGS 631 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~--~~l-------------------eDyA~~i~aLl~LYeaTg 631 (840)
++.++..+=..|||++-.. +..|.+++...++..+.. +.+ +-=+.++.+|...+.+..
T Consensus 108 ~~~l~~lkw~~Dyllk~~~-~~~g~vy~qVG~~~~Dh~~W~~PE~~~~~R~~~~is~~~PGSd~aae~AAALAaaS~vfk 186 (484)
T PLN02175 108 ENARVNIRWATDYLLKCAR-ATPGKLYVGVGDPNVDHKCWERPEDMDTPRTVYSVSPSNPGSDVAAETAAALAAASMVFR 186 (484)
T ss_pred HHHHHHHHHHHHHHHhCcC-CCCCeEEEEeCCCCCCcccCCChhHccCccceEecCCCCCccHHHHHHHHHHHHHHHHhc
Confidence 4567777777888887543 345788886544322110 111 122344445555555443
Q ss_pred --CHH----HHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCC---hHHHHHHHHHHHHHHhCCCC
Q 003187 632 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVINLVRLASIVAGSK 702 (840)
Q Consensus 632 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS---~Ns~~a~~LlrL~~lt~~~~ 702 (840)
|+. .|+.|+++++.+++. .|.|.++.... ... ..+| -+-..+++-..|+..||+
T Consensus 187 ~~D~~YA~~lL~~Ak~ly~fA~~~-----~g~y~~~~~~~------~~~----~Y~s~s~y~DEl~WAAawLY~ATgd-- 249 (484)
T PLN02175 187 KVDSKYSRLLLATAKKVMQFAIQY-----RGAYSDSLSSS------VCP----FYCSYSGYKDELMWGASWLLRATND-- 249 (484)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhC-----CCCcccCcccc------ccC----ccccCCCccHHHHHHHHHHHHHhCC--
Confidence 454 488888888887752 34454331100 000 1112 245788888899999996
Q ss_pred chHHHHHHHH
Q 003187 703 SDYYRQNAEH 712 (840)
Q Consensus 703 ~~~y~~~A~~ 712 (840)
..|.+.+..
T Consensus 250 -~~Yl~~~~~ 258 (484)
T PLN02175 250 -PYYANFIKS 258 (484)
T ss_pred -HHHHHHHHH
Confidence 778876653
No 320
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=40.50 E-value=1.3e+02 Score=25.63 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=37.9
Q ss_pred EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 145 IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 145 ~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+++.+|+||++..- +.+..+=.|-.+.|+..+.+ ..+ ..+.+.+-.|+.+ ++|..++.
T Consensus 2 y~~~~Sp~~~kv~~-------~l~~~~i~~~~~~v~~~~~~---~~~----~~~~p~~~vPvL~---~~g~~l~d 59 (75)
T PF13417_consen 2 YGFPGSPYSQKVRL-------ALEEKGIPYELVPVDPEEKR---PEF----LKLNPKGKVPVLV---DDGEVLTD 59 (75)
T ss_dssp EEETTSHHHHHHHH-------HHHHHTEEEEEEEEBTTSTS---HHH----HHHSTTSBSSEEE---ETTEEEES
T ss_pred CCcCCChHHHHHHH-------HHHHcCCeEEEeccCcccch---hHH----HhhcccccceEEE---ECCEEEeC
Confidence 68899999999753 23344446777778866542 222 2334778899986 33777765
No 321
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=40.32 E-value=1.2e+02 Score=33.92 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=38.9
Q ss_pred ccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc
Q 003187 124 FAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (840)
Q Consensus 124 ~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD 180 (840)
....++++++|.+.+.|.||+|.. -|+....-....-.-.++.+..+++-+.++.+
T Consensus 179 ~~eL~~ai~~A~~~~GpalIeV~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (301)
T PRK05778 179 VKQLVELIKKAISHKGFAFIDVLS-PCVTFNGRNTSTKSPAYMREYYKKRVYKLKLE 234 (301)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcC-CCCCCCCcCCcccCHHHHHHHHHhhcEEcccc
Confidence 344688999999999999999954 56666543222223456777888888888544
No 322
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=40.11 E-value=31 Score=32.29 Aligned_cols=58 Identities=22% Similarity=0.380 Sum_probs=33.1
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
-++.++|.+|++.. ++|++ +.-+..+|..+.|.-.......+ +..|.|..-+++..|+
T Consensus 3 iY~~~~C~~c~ka~----------~~L~~~~i~~~~idi~~~~~~~~el~~~~----~~~~~~~~~l~~~~~~ 61 (111)
T cd03036 3 FYEYPKCSTCRKAK----------KWLDEHGVDYTAIDIVEEPPSKEELKKWL----EKSGLPLKKFFNTSGK 61 (111)
T ss_pred EEECCCCHHHHHHH----------HHHHHcCCceEEecccCCcccHHHHHHHH----HHcCCCHHHHHhcCCc
Confidence 47889999999864 35554 34444556654443222232233 3336666666666655
No 323
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=39.60 E-value=37 Score=32.93 Aligned_cols=44 Identities=9% Similarity=-0.056 Sum_probs=29.5
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcC
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDR 181 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ 181 (840)
...+++++.|+...|++|..|+.... +-+.++++. .+..+-++.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~--~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELE--KLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHH--HHHHHHTTTTTEEEEEEES
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHh--hhhhhccCCCceEEEEEEc
Confidence 45677888899999999999988665 555555443 444444444
No 324
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=39.52 E-value=1.1e+02 Score=34.92 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=46.5
Q ss_pred hhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC-CCC-CCC---
Q 003187 536 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPS-KAP--- 610 (840)
Q Consensus 536 ltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~-g~~-~~~--- 610 (840)
-.+.|...|-.+.+.++.+||..+ .++....+++++++++. +|+++-++...... ++. +..
T Consensus 97 ~~D~~~~fVL~vyr~~~~TGD~~f------------L~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D~TyD~~~~~ 162 (365)
T PF04685_consen 97 WKDLNPKFVLQVYRDYKWTGDRDF------------LKEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPDQTYDDWSMY 162 (365)
T ss_dssp --------------------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET---SSSTT-EEE
T ss_pred cccccccccccccccccccccchh------------hhhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCccccccCCee
Confidence 334678889999999999998211 13345788999999987 56544344332210 011 111
Q ss_pred CCcchH-----HHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcccccCCcccc
Q 003187 611 GFLDDY-----AFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 660 (840)
Q Consensus 611 ~~leDy-----A~~i~aLl~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 660 (840)
| .+-| ..++.++.++.++-|++ +|.+.+++..+.+++.+|+ |.||.
T Consensus 163 G-~say~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWn---Geyy~ 217 (365)
T PF04685_consen 163 G-PSAYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWN---GEYYR 217 (365)
T ss_dssp E-EEHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEE---TTEE-
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhC---Hhhee
Confidence 1 1112 33556778888888885 5778888888888898996 55776
No 325
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=39.48 E-value=37 Score=35.23 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=31.9
Q ss_pred CCCEEEEEeccCChhhhhhhhccc-CCHHHHHHHhcCeEEEEEcC
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESF-EDEGVAKLLNDWFVSIKVDR 181 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf-~d~eVa~~ln~~FV~vkvD~ 181 (840)
+||-+|.|..-.|++|..++. ++ ..+.+.+.+.++-..+++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecc
Confidence 578899999999999999987 44 44788888876534444443
No 326
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=38.00 E-value=2.5e+02 Score=32.34 Aligned_cols=141 Identities=23% Similarity=0.330 Sum_probs=73.8
Q ss_pred HHHHH-----HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee------cCCCC
Q 003187 539 WNGLV-----ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF------RNGPS 607 (840)
Q Consensus 539 WNal~-----I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~------~~g~~ 607 (840)
|..-| |+.|++||..++| +.||..|.++..--+ +.. .+|+....+ .+.-|
T Consensus 418 W~SAMaQGhaISvL~RAy~h~~D----------------e~yL~sAa~al~pyk--~~S-~dgGV~a~Fm~K~~WYEEYP 478 (594)
T KOG3760|consen 418 WHSAMAQGHAISVLTRAYKHFND----------------EKYLKSAAKALKPYK--INS-SDGGVRAEFMGKNIWYEEYP 478 (594)
T ss_pred hHhhhhcccchHHHHHHHHhcCc----------------HHHHHHHHhhcCCeE--eec-CCCceEEEEccccchhhhcC
Confidence 77666 8999999999988 789988887763221 222 235444333 33333
Q ss_pred CCCC--CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHcccccCCccccCCC----CCCcccccccc
Q 003187 608 KAPG--FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNT-------QDELFLDREGGGYFNTTG----EDPSVLLRVKE 674 (840)
Q Consensus 608 ~~~~--~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~-------~~~~F~D~~~Ggyf~t~~----~~~~l~~R~k~ 674 (840)
..++ .++.+.+-+.||.+|=+ |...+--+.|.+|... |+- .+|.-+|.-|+--. -+|. +.|+
T Consensus 479 TTP~SfVLNGF~YSLiGLYDL~e-Ta~~Kia~EA~~Ly~~Gm~SLK~mLp-LyDTGSGTiYDLRH~~LG~APN-LARW-- 553 (594)
T KOG3760|consen 479 TTPGSFVLNGFLYSLIGLYDLDE-TARAKIAQEAQELYSAGMRSLKQMLP-LYDTGSGTIYDLRHVALGTAPN-LARW-- 553 (594)
T ss_pred CCCcceeehhHHHHhhhhhccch-hhhHHHHHHHHHHHHHHHHHHHhhhe-eeecCCCceeehhhhhhccCcc-cccc--
Confidence 3332 45666555555555522 2222333455555543 222 35765666665321 1122 1232
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003187 675 DHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 713 (840)
Q Consensus 675 ~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~ 713 (840)
.-.+..+..|.-|+.+-. ++-..+.|++-
T Consensus 554 -------DYHatHvnqL~llatId~---dpv~~~ta~RW 582 (594)
T KOG3760|consen 554 -------DYHATHVNQLKLLATIDK---DPVLSKTADRW 582 (594)
T ss_pred -------hhhhHHHHHHHHHhhccc---cHHHHHHHHHH
Confidence 123455666777777643 36555555543
No 327
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.25 E-value=57 Score=28.93 Aligned_cols=65 Identities=28% Similarity=0.381 Sum_probs=38.6
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc------------CCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD------------REERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD------------~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
.||++ ||+..|+-|-..-.+ -+.+|-+|-.|.+- |+.+|+.|+.- -.|.-|.|
T Consensus 2 skp~l--fgsn~Cpdca~a~ey-------l~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk------~~gyiGIP 66 (85)
T COG4545 2 SKPKL--FGSNLCPDCAPAVEY-------LERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVK------SNGYIGIP 66 (85)
T ss_pred CCcee--eccccCcchHHHHHH-------HHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhh------hcCcccce
Confidence 37866 999999999865321 12333344443332 23445444321 23667899
Q ss_pred cEEEECCCCceecc
Q 003187 206 LSVFLSPDLKPLMG 219 (840)
Q Consensus 206 ~~vfl~p~g~~~~~ 219 (840)
.. +++||+++.+
T Consensus 67 al--l~~d~~vVl~ 78 (85)
T COG4545 67 AL--LTDDGKVVLG 78 (85)
T ss_pred EE--EeCCCcEEEe
Confidence 75 6788988875
No 328
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=35.43 E-value=1.1e+02 Score=32.62 Aligned_cols=116 Identities=20% Similarity=0.167 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeE
Q 003187 282 QNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGF 361 (840)
Q Consensus 282 ~~~~~~~~~~l~~~~D~~~GGfg~aPKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF 361 (840)
...+++++..|.+. .++...+..+.++-+.....+ +......+...|+.++. +.+|+.
T Consensus 112 ~~~i~kA~~~L~~~----------~~~~~~~Y~lAl~aYAL~la~-------~~~~~~~~~~~L~~~a~-----~~~~~~ 169 (246)
T PF07678_consen 112 ENAINKALNYLERH----------LDNIQDPYTLALVAYALALAG-------DSPQASKLLNKLNSMAT-----TEGGLR 169 (246)
T ss_dssp HHHHHHHHHHHHHH----------HGCTSSHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHCHCE-----ETTTTC
T ss_pred HHHHHHHHHHHHHh----------ccccCCHHHHHHHHHHHHhhc-------ccchHHHHHHHHHHhhh-----hccccC
Confidence 45667777777765 344556666655554443321 12333444455555544 334554
Q ss_pred EEEecCCCCCCCCCcc---hH---HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeecc
Q 003187 362 HRYSVDERWHVPHFEK---ML---YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 428 (840)
Q Consensus 362 ~RYsvD~~W~vPHFEK---ML---YDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~D 428 (840)
| |..+.....+..-. -- =-.|..+.++.+. ++ ...+..++.||.+. ++..|||.|++|
T Consensus 170 ~-W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~----~~---~~~~~~iv~WL~~q-r~~~Ggf~STQd 233 (246)
T PF07678_consen 170 Y-WSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR----GD---LEEASPIVRWLISQ-RNSGGGFGSTQD 233 (246)
T ss_dssp E-E-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH----TC---HHHHHHHHHHHHHC-TTTTSSTSSHHH
T ss_pred c-ccCCcccccccccccccchHHHHHHHHHHHHHHhc----cc---HHHHHHHHHHHHHh-cCCCCccCcHHH
Confidence 4 67766554432110 11 1133344444443 43 45888999999984 466899999875
No 329
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=34.69 E-value=83 Score=31.32 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=17.4
Q ss_pred CChhhhhhhhcccCCHHHHHHHhcCeE-EEEEcCCCCccH
Q 003187 149 TCHWCHVMEVESFEDEGVAKLLNDWFV-SIKVDREERPDV 187 (840)
Q Consensus 149 wC~wC~~me~etf~d~eVa~~ln~~FV-~vkvD~ee~pd~ 187 (840)
+|++|+.+. ++|+.+=| ...+|++..++.
T Consensus 15 t~~~C~~ak----------~iL~~~~V~~~e~DVs~~~~~ 44 (147)
T cd03031 15 TFEDCNNVR----------AILESFRVKFDERDVSMDSGF 44 (147)
T ss_pred cChhHHHHH----------HHHHHCCCcEEEEECCCCHHH
Confidence 899998864 35554322 234677655543
No 330
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=34.53 E-value=34 Score=31.46 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=31.8
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
-++.++|.+|++.. ++|++ +.-...+|..+.|.-.....+.. +..|.+..-++++.+.+.
T Consensus 3 iY~~~~C~~c~ka~----------~~L~~~~i~~~~idi~~~~~~~~~l~~~~----~~~~~~~~~li~~~~~~~ 63 (105)
T cd02977 3 IYGNPNCSTSRKAL----------AWLEEHGIEYEFIDYLKEPPTKEELKELL----AKLGLGVEDLFNTRGTPY 63 (105)
T ss_pred EEECCCCHHHHHHH----------HHHHHcCCCcEEEeeccCCCCHHHHHHHH----HhcCCCHHHHHhcCCchH
Confidence 47899999999864 34443 22233345544443333333333 333555555666665544
No 331
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=33.92 E-value=10 Score=34.63 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=18.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceE
Q 003187 385 LANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (840)
Q Consensus 385 Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (840)
....++.++...+++.+.+.++++++||++.. .++|||-
T Consensus 28 ~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q-~~dG~w~ 66 (109)
T PF13243_consen 28 VTAALILALAAAGDAAVDEAIKKAIDWLLSHQ-NPDGGWG 66 (109)
T ss_dssp -------------TS-SSBSSHHHHHHHHH----TTS--S
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhc-CCCCCCC
Confidence 34444455555678889999999999999854 7788874
No 332
>PLN02420 endoglucanase
Probab=33.28 E-value=9.5e+02 Score=29.06 Aligned_cols=145 Identities=10% Similarity=0.023 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC--------C---CC
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--------S---KA 609 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~--------~---~~ 609 (840)
|..++.|+-++.-+++. .+-.|. .+.+|+.++-..||+++-.-. .+.+++...+|. | ..
T Consensus 103 a~t~~~L~w~~~ef~d~-------~~~~g~-~~d~Ldeikw~lD~llk~~~~--~~~~~~qvGdg~~DH~~w~~Pe~~~~ 172 (525)
T PLN02420 103 AFTVTMLSWSVIEYGDQ-------LASTGE-LSHALEAIKWGTDYFIKAHTS--PNVLWAEVGDGDTDHYCWQRPEDMTT 172 (525)
T ss_pred HHHHHHHHHHHHHHHHh-------hhhcCC-cHHHHHHHHHHHHHHHHhCcC--CCceEEeeCCCCcccccccChhhccc
Confidence 55555555555554441 111222 488999999999999987543 455665544332 1 00
Q ss_pred CCC---------cchH-HHHHHHHHHHHHHcC--CHH----HHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccc
Q 003187 610 PGF---------LDDY-AFLISGLLDLYEFGS--GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 673 (840)
Q Consensus 610 ~~~---------leDy-A~~i~aLl~LYeaTg--d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k 673 (840)
.+. -.|- +.++.+|...+.+-. |+. .|+.|+++++..++ ..|.| ..+...
T Consensus 173 ~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA~~-----~~g~y-~~~~~~-------- 238 (525)
T PLN02420 173 SRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFGDK-----YRGKY-DESLKV-------- 238 (525)
T ss_pred cCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHh-----cCCcc-CCCCcc--------
Confidence 010 1232 334444555555443 454 47778887776653 12333 211100
Q ss_pred cCCCCCCCC---hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003187 674 EDHDGAEPS---GNSVSVINLVRLASIVAGSKSDYYRQNAEHSL 714 (840)
Q Consensus 674 ~~~D~a~PS---~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l 714 (840)
-.+...| -.-.++++-..|++.||+ ..|.+.+.+..
T Consensus 239 --~~g~Y~s~s~y~DEl~WAAawLY~ATgd---~~Yl~~a~~~~ 277 (525)
T PLN02420 239 --VKSYYASVSGYMDELLWGATWLYRATDN---EHYMSYVVDMA 277 (525)
T ss_pred --cCCCCCCcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence 0011222 235788888899999996 78998876543
No 333
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=32.95 E-value=1.2e+02 Score=29.37 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=33.4
Q ss_pred HHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCC--CCCCcEEEECCCCc
Q 003187 164 EGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLK 215 (840)
Q Consensus 164 ~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~~g~--~G~P~~vfl~p~g~ 215 (840)
.+||+.+... +..+-+|.++.+.+.+.+ |. .++|+.++++.++.
T Consensus 47 ~~vAk~~kgk~i~Fv~vd~~~~~~~~~~f--------gl~~~~~P~v~i~~~~~~ 93 (130)
T cd02983 47 KSVAEKFKKKPWGWLWTEAGAQLDLEEAL--------NIGGFGYPAMVAINFRKM 93 (130)
T ss_pred HHHHHHhcCCcEEEEEEeCcccHHHHHHc--------CCCccCCCEEEEEecccC
Confidence 4778888777 888889998876644433 64 36999999999764
No 334
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=32.89 E-value=1.2e+02 Score=23.90 Aligned_cols=60 Identities=13% Similarity=-0.050 Sum_probs=35.6
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
-++..+|++|++... +.+..+-.|-.+.++..+.+.. .+ ....+.+..|+.++ + |+.++.
T Consensus 3 ly~~~~~~~~~~~~~-------~l~~~~i~~~~~~~~~~~~~~~--~~----~~~~~~~~~P~l~~-~--~~~~~e 62 (71)
T cd00570 3 LYYFPGSPRSLRVRL-------ALEEKGLPYELVPVDLGEGEQE--EF----LALNPLGKVPVLED-G--GLVLTE 62 (71)
T ss_pred EEeCCCCccHHHHHH-------HHHHcCCCcEEEEeCCCCCCCH--HH----HhcCCCCCCCEEEE-C--CEEEEc
Confidence 367789999998653 2333344677777776543332 12 23457788896653 2 566543
No 335
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=32.38 E-value=52 Score=31.91 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=21.5
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCcc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPD 186 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd 186 (840)
..++.++|++|++.. ++|+++ .-+..+|..+.|.
T Consensus 3 ~iY~~~~C~~C~ka~----------~~L~~~gi~~~~idi~~~~~ 37 (131)
T PRK01655 3 TLFTSPSCTSCRKAK----------AWLEEHDIPFTERNIFSSPL 37 (131)
T ss_pred EEEeCCCChHHHHHH----------HHHHHcCCCcEEeeccCChh
Confidence 357899999999843 566653 3333456554443
No 336
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=32.32 E-value=1.9e+02 Score=32.09 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=58.3
Q ss_pred chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEE---cCCCC--ccHHHHHHHHHHHhcC
Q 003187 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREER--PDVDKVYMTYVQALYG 200 (840)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkv---D~ee~--pd~~~~y~~~~~~~~g 200 (840)
...+++++|.+.+.|.||++.. -|+...++. ..+.++++-+.+.- |...+ +++..++.++......
T Consensus 164 eL~~ai~~Al~~~GpslIeV~~-pC~t~n~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 234 (287)
T TIGR02177 164 HLKEIIKEAINHKGYALVDILQ-PCVTYNKIN--------TYEWYRERVYKLDEEGYDPIVREPEEFEEKAAAAIKKAME 234 (287)
T ss_pred HHHHHHHHHHhCCCCEEEEEeC-CCCCCCccc--------HHHHHHHhceeccccccCccccchhhhhhhHHHHHHHHHh
Confidence 4688999999999999999985 455553322 16778888888853 22222 3333444444332212
Q ss_pred -CCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHH
Q 003187 201 -GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDK 247 (840)
Q Consensus 201 -~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~ 247 (840)
.+.+|+=+|+.-+.+ |.|-+.+.++.+.|.+
T Consensus 235 ~~~~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~ 266 (287)
T TIGR02177 235 WGDRIPIGIFYKNENK----------------ETFEERLEKILPRYMS 266 (287)
T ss_pred hcCCceEEEEEECCCC----------------CCHHHHHHHHHHhccc
Confidence 356777777654222 3576767666665543
No 337
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=32.27 E-value=67 Score=26.49 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 003187 492 NDSSASASKLGMPLEKYLNILGECRRKLF 520 (840)
Q Consensus 492 ~~~~~~a~~~g~~~e~l~~~l~~~r~kL~ 520 (840)
.+..++|+++|++...+.+.|..+.+||.
T Consensus 24 ~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 24 ITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999998886
No 338
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=30.76 E-value=64 Score=25.71 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=22.9
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHH
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKL 519 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL 519 (840)
+..++|+.+|+++..+...+..++++|
T Consensus 28 s~~eIa~~l~~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 28 SYAEIAEILGISESTVKRRLRRARKKL 54 (54)
T ss_dssp -HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 457899999999999999999999886
No 339
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=28.90 E-value=1.2e+02 Score=33.13 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=38.5
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHH
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 552 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~ 552 (840)
+.+++|+.+|+++..++..+..+|++|.+.+.. +..+. .=+.-++.+|..|.+
T Consensus 126 s~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~~~~---~~~~~----~~~~~~~~~f~~a~~ 178 (281)
T TIGR02957 126 PYEEIASIVGKSEANCRQLVSRARRHLDARRPR---FEVSR----EESRQLLERFVEAAQ 178 (281)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC---CCCCh----HHHHHHHHHHHHHHH
Confidence 457899999999999999999999999875432 11221 123556777777765
No 340
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=28.10 E-value=87 Score=37.46 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcccccCCccccCCC
Q 003187 620 ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 663 (840)
Q Consensus 620 i~aLl~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~ 663 (840)
...|..+++..|+. .|.++|.++.+.+.+.|||++.|.||+-.-
T Consensus 317 e~~LA~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~ 364 (512)
T PF01204_consen 317 EKDLAEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYDL 364 (512)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EET
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeeeC
Confidence 34556677788865 689999999999999999999999997543
No 341
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=27.59 E-value=77 Score=34.66 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=41.3
Q ss_pred CCEEEEEeccCChhhhhhhhcccCCHHHHH-HHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAK-LLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 139 KpI~l~~g~~wC~wC~~me~etf~d~eVa~-~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
..|+|+||-+.|.-|..|+. .+. .+|. +..-+||-|....- |.+ ..| ...+.|+.+++- +|..+
T Consensus 147 ~~VVVHiY~~~~~~C~~mn~-~L~--~LA~kyp~vKFvkI~a~~~--~~~-~~f--------~~~~LPtllvYk-~G~l~ 211 (265)
T PF02114_consen 147 TWVVVHIYEPGFPRCEIMNS-CLE--CLARKYPEVKFVKIRASKC--PAS-ENF--------PDKNLPTLLVYK-NGDLI 211 (265)
T ss_dssp -EEEEEEE-TTSCCHHHHHH-HHH--HHHHH-TTSEEEEEEECGC--CTT-TTS---------TTC-SEEEEEE-TTEEE
T ss_pred cEEEEEEEeCCCchHHHHHH-HHH--HHHHhCCceEEEEEehhcc--Ccc-cCC--------cccCCCEEEEEE-CCEEE
Confidence 46999999999999999986 442 3443 33336776666432 321 122 456899999988 78776
Q ss_pred cc
Q 003187 218 MG 219 (840)
Q Consensus 218 ~~ 219 (840)
..
T Consensus 212 ~~ 213 (265)
T PF02114_consen 212 GN 213 (265)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 342
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=27.25 E-value=2.5e+02 Score=30.11 Aligned_cols=128 Identities=9% Similarity=0.081 Sum_probs=79.3
Q ss_pred CCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhccc---CCHHHHHHHhcCeEEEEEcCCCCc-cHHHHHHHH
Q 003187 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESF---EDEGVAKLLNDWFVSIKVDREERP-DVDKVYMTY 194 (840)
Q Consensus 119 ~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf---~d~eVa~~ln~~FV~vkvD~ee~p-d~~~~y~~~ 194 (840)
.|-.|+.+.++-++-+++.|---++.+++--=. + ....+| +++++.+.+++. + ...+ ...+ -+...+...
T Consensus 88 ~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~-~--~~~~v~~~at~~~~~~~l~~~-~-~~~~-~g~i~G~~g~ll~~ 161 (238)
T TIGR00161 88 PPAVVYDMTNAIVEWMVRNNSRELISFNGMVVR-E--KSQPVFGAANSQELIERLKDL-I-EIFP-FGNLNGISGTLLTR 161 (238)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCC-C--CCCcEEEEECCHHHHHHHHHh-c-CcCC-CCEEechhHHHHHH
Confidence 445699999999999999998777777662222 1 223333 478899999865 1 1111 1121 223333333
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHH--HcHHHHHHHHHHHHHHHHHHh
Q 003187 195 VQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAFAIEQLSEAL 267 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~--~~~~~~~~~a~~~~~~l~~~~ 267 (840)
+ ...|+|..+++.+- .+|+| .. ..=..+|+.+.+.+. =+-+++++.|+++.+.+++..
T Consensus 162 a----~~~gi~~i~Ll~et------~~~~P-DP----~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~~~~el~ 221 (238)
T TIGR00161 162 C----AVNDIPAICLLAET------LGPYP-DP----RAAASLVEVLNKMLNTNVDPEPLLKEAEAIESRLKKLA 221 (238)
T ss_pred H----HHcCCCEEEEEEeC------CCCCC-CH----HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3 34699999998664 23444 21 245556666666653 478899999988888777654
No 343
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.46 E-value=3.4e+02 Score=27.41 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=23.6
Q ss_pred HHHHHhcCCCEEEEEe-ccCChhhhhhhhcccCC
Q 003187 131 FAEARKRDVPIFLSIG-YSTCHWCHVMEVESFED 163 (840)
Q Consensus 131 l~~Ak~e~KpI~l~~g-~~wC~wC~~me~etf~d 163 (840)
+..+.-.||+|+|.|| .++++-|-. |.-.|+|
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~-Ea~~Frd 55 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTT-EACDFRD 55 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchH-HHHHHHH
Confidence 4455667889999886 589999988 4456655
No 344
>PRK13271 treA trehalase; Provisional
Probab=25.00 E-value=1.1e+02 Score=37.28 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCH----HHHHHHHHHHHHHHHHcccccCCccccCCC
Q 003187 622 GLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 663 (840)
Q Consensus 622 aLl~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~ 663 (840)
-|.++++..|+. .|.++|.++.+.+.+.|||++.|.||+-..
T Consensus 351 ~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl 396 (569)
T PRK13271 351 ILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYDL 396 (569)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEC
Confidence 344556667765 688999999999999999999888887653
No 345
>PRK12559 transcriptional regulator Spx; Provisional
Probab=24.77 E-value=72 Score=31.00 Aligned_cols=33 Identities=9% Similarity=0.189 Sum_probs=20.8
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEE-EEEcCCCCc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERP 185 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~-vkvD~ee~p 185 (840)
..++.++|..|++.. ++|+++=|. ..+|..+.|
T Consensus 3 ~iY~~~~C~~crkA~----------~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 3 VLYTTASCASCRKAK----------AWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred EEEeCCCChHHHHHH----------HHHHHcCCCeEEEEeeCCc
Confidence 457899999999843 567654332 334554433
No 346
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=24.75 E-value=1.4e+03 Score=28.36 Aligned_cols=160 Identities=9% Similarity=0.027 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCh
Q 003187 234 FKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDS-RFGGFGSAPKFPRP 312 (840)
Q Consensus 234 f~~~L~~i~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~-~~GGfg~aPKFP~~ 312 (840)
.-+..........+.-+.+.+.-..--+ +-.... ...+.. -.++....+--|+...|. ..|++=-+|-+|.|
T Consensus 209 ~~~a~~~~~~~l~~g~~~~~~~~~~~W~---~w~~~~---~~~~~~-~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~p 281 (648)
T TIGR01535 209 AYEAAKTAVATLKEGYRRVKDAYIDEWE---KYLNSL---NNFNGK-GNSLYYVSMMILKAHEDKTNPGAYIASLSIPWG 281 (648)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---HHHhcc---ccCCch-HHHHHHHHHHHHHHhcCCCCCCcEEEecCCCCC
Confidence 4455555555555666666554433222 222111 011111 245566666678888888 45999888888865
Q ss_pred hHH----------------HHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCe-EEEEecCCCCCCCCC
Q 003187 313 VEI----------------QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG-FHRYSVDERWHVPHF 375 (840)
Q Consensus 313 ~~l----------------~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GG-F~RYsvD~~W~vPHF 375 (840)
... .+........ |. .+.+.......++... . .|+ .++|.+|..-..+
T Consensus 282 e~~g~~~n~dYryvW~RD~a~~a~AL~~~---G~---~~~a~~~~~~l~~~~~------~-~G~~lq~y~vdG~~~~~-- 346 (648)
T TIGR01535 282 DGQADDNTGGYHLVWPRDLYQVANAFLAA---GD---VDSALRSLDYLAKVQQ------D-NGMFPQNSWVDGKPYWT-- 346 (648)
T ss_pred ccCCCCCCCceEEEehhhHHHHHHHHHHC---CC---HHHHHHHHHHHHHHhc------c-CCCcCceeccCCCCCCC--
Confidence 321 1111111111 11 1233333333222222 2 344 5679999875555
Q ss_pred cchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhc
Q 003187 376 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDM 416 (840)
Q Consensus 376 EKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m 416 (840)
|.-|---|.+|.+....++... ..|...++.+++||.+..
T Consensus 347 ~iQlD~~g~~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 347 GIQLDETAFPILLAYRLHRYDH-AFYDKMLKPAADFIVKNG 386 (648)
T ss_pred CccccHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHcC
Confidence 4444446777776656666433 678889999999999854
No 347
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=24.56 E-value=86 Score=32.78 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=52.6
Q ss_pred cchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003187 125 AWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGG 201 (840)
Q Consensus 125 ~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~pd~~~~y~~~~~~~~g~ 201 (840)
+.-.+.++.-++..| |++.||-+.-.-|+.|++- .++|.+. =-.||||++.-|-+..++ ++
T Consensus 72 ~~Ekdf~~~~~kS~k-VVcHFY~~~f~RCKimDkh-------Le~LAk~h~eTrFikvnae~~PFlv~kL--------~I 135 (211)
T KOG1672|consen 72 ASEKDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKH-------LEILAKRHVETRFIKVNAEKAPFLVTKL--------NI 135 (211)
T ss_pred ccHHHHHHHhhcCce-EEEEEEcCCCcceehHHHH-------HHHHHHhcccceEEEEecccCceeeeee--------ee
Confidence 334567777777665 8889999999999999862 1233332 235789999989877655 67
Q ss_pred CCCCcEEEECCC
Q 003187 202 GGWPLSVFLSPD 213 (840)
Q Consensus 202 ~G~P~~vfl~p~ 213 (840)
.-.|+.+++--.
T Consensus 136 kVLP~v~l~k~g 147 (211)
T KOG1672|consen 136 KVLPTVALFKNG 147 (211)
T ss_pred eEeeeEEEEEcC
Confidence 789998877543
No 348
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=24.53 E-value=96 Score=32.86 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=26.9
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFD 521 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~ 521 (840)
+..++|+.+|++.+.+.++...+++||..
T Consensus 198 t~~EIA~~lgis~~~V~q~~~~al~kLr~ 226 (238)
T TIGR02393 198 TLEEVGKEFNVTRERIRQIESKALRKLRH 226 (238)
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999986
No 349
>PLN02710 farnesyltranstransferase subunit beta
Probab=24.19 E-value=7.3e+02 Score=29.28 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhccCCCCceEe
Q 003187 404 ICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 404 ~A~~t~~fl~r~m~~~~Ggfys 425 (840)
..+++++||.+ .+..+|||-.
T Consensus 192 ~~e~~~~~I~s-cQ~~dGGF~g 212 (439)
T PLN02710 192 LVKGVGDYILS-CQTYEGGIGG 212 (439)
T ss_pred hHHHHHHHHHH-hCCCCCCCCC
Confidence 46789999997 7788999964
No 350
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=23.87 E-value=1.2e+02 Score=28.54 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=31.6
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
-++.++|+.|++..+ +|++ +.-...+|..+.|.-.....+.++.+ |-..--+++..|+.
T Consensus 3 iY~~~~C~~c~ka~~----------~L~~~~i~~~~idi~~~~~~~~el~~l~~~~----~~~~~~lin~~~~~ 62 (117)
T TIGR01617 3 VYGSPNCTTCKKARR----------WLEANGIEYQFIDIGEDGPTREELLDILSLL----EDGIDPLLNTRGQS 62 (117)
T ss_pred EEeCCCCHHHHHHHH----------HHHHcCCceEEEecCCChhhHHHHHHHHHHc----CCCHHHheeCCCcc
Confidence 478999999998653 4544 33444566655554333333333332 33333345555443
No 351
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=23.86 E-value=1.7e+02 Score=31.92 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=38.5
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHH
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 552 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~ 552 (840)
+.+++|+.+|+++..++..+..+|++|.+.+.. ..+... =|.-++.++..|..
T Consensus 133 s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~~~-~~~~~~------~~~~~v~~f~~A~~ 185 (293)
T PRK09636 133 PFDEIASTLGRSPAACRQLASRARKHVRAARPR-FPVSDE------EGAELVEAFFAALA 185 (293)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC-CCCCch------HHHHHHHHHHHHHH
Confidence 457899999999999999999999999986542 111111 24556667777664
No 352
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=23.60 E-value=1.1e+03 Score=28.79 Aligned_cols=44 Identities=11% Similarity=-0.031 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-CCceEe
Q 003187 382 QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-GGEIFS 425 (840)
Q Consensus 382 NA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~-~Ggfys 425 (840)
|+--+.-.++.|-+|||+.-+.+.++=+.|++.+..-. +|-|.-
T Consensus 409 Q~Wsm~R~AeyYy~tGd~~ak~ildKWv~W~~~~~~~~~dG~f~I 453 (619)
T PF02011_consen 409 QAWSMERVAEYYYETGDARAKAILDKWVAWALSNTTVNSDGTFEI 453 (619)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT-EE-TTS-EEE
T ss_pred cchhHHHHHHHHHHhccHHHHHHHHHHHHHHHhhceeCCCCcEec
Confidence 67777778899999999999999999999999987653 566653
No 353
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=23.43 E-value=6.5e+02 Score=31.20 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEee-c--CCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 003187 577 EVAESAASFIRRHLYDEQTHRLQHSF-R--NGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 653 (840)
Q Consensus 577 e~A~~~~~fl~~~l~d~~~G~l~~~~-~--~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~ 653 (840)
+.|+....++.++. +.|++.|.. . +|.+ .-+..|.-=..|..+.+.+..|+|..+++........+.+.+.-
T Consensus 303 elArg~L~~~a~~~---~~GkIPhe~~~~~~~~~-~Y~tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~- 377 (641)
T COG3408 303 ELARGTLNTLARYS---EPGKIPHEILLSIPGEP-YYNTVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILK- 377 (641)
T ss_pred HHHHHHHHHHHhhc---cCCCCcchhhhcCCCcc-eeccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-
Confidence 56777777777763 468888875 2 2332 22345555567888889999999999987777666655554421
Q ss_pred cCCcc-ccCCCCC--Cc-cccccccCCCCC---CC------ChHHH---HHHHHHHHHHHhC--CCCchHHHHHHHHHHH
Q 003187 654 EGGGY-FNTTGED--PS-VLLRVKEDHDGA---EP------SGNSV---SVINLVRLASIVA--GSKSDYYRQNAEHSLA 715 (840)
Q Consensus 654 ~~Ggy-f~t~~~~--~~-l~~R~k~~~D~a---~P------S~Ns~---~a~~LlrL~~lt~--~~~~~~y~~~A~~~l~ 715 (840)
++.+ |.+..+. +. -...+++..+.. .| --|++ +..++.+++.+.+ ++ .+++.+.|+++.+
T Consensus 378 -~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~-~~~~~~~a~~l~~ 455 (641)
T COG3408 378 -GFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEED-AARLEKIARRLKE 455 (641)
T ss_pred -cCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHH
Confidence 1111 2221110 00 011112211111 11 24555 5566778888887 22 3667777888877
Q ss_pred HHHHHH
Q 003187 716 VFETRL 721 (840)
Q Consensus 716 ~~~~~i 721 (840)
.|....
T Consensus 456 ~F~~~f 461 (641)
T COG3408 456 SFEAKF 461 (641)
T ss_pred HHHHHh
Confidence 776555
No 354
>COG5498 ACF2 Predicted glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=23.31 E-value=1.5e+03 Score=28.04 Aligned_cols=104 Identities=11% Similarity=0.099 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHcccccC-CccccCCC------CC-C-ccccccccCCCCCCCChH
Q 003187 616 YAFLISGLLDLYEFGSGTKWLV--WAIELQNTQDELFLDREG-GGYFNTTG------ED-P-SVLLRVKEDHDGAEPSGN 684 (840)
Q Consensus 616 yA~~i~aLl~LYeaTgd~~yL~--~A~~L~~~~~~~F~D~~~-Ggyf~t~~------~~-~-~l~~R~k~~~D~a~PS~N 684 (840)
|.+.|.+....-.+ |+.|++ --++..+.+++.+..+.. ..||-... .+ . .-+...-+.-|..--|.-
T Consensus 514 YGY~V~aAAvIg~v--D~~W~~~~NnkdwVn~LiRD~anps~~D~yFp~~RmFDwf~GhSWA~GLfesgdGkdEEStSEd 591 (760)
T COG5498 514 YGYFVKAAAVIGLV--DSSWAKSENNKDWVNLLIRDVANPSEDDPYFPQFRMFDWFNGHSWADGLFESGDGKDEESTSED 591 (760)
T ss_pred hhhhhhhhhhhhcc--CHHHhhcCchHHHHHHHHHhhcCCccCCccchhhhccccccCCchhhcccccCCCCCcccchHH
Confidence 35555555444333 567776 555666777666654432 23442110 00 0 000100011111111222
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003187 685 SVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDM 724 (840)
Q Consensus 685 s~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~ 724 (840)
--.+-+....+.++|+ ...++||.-+|......+.++
T Consensus 592 ~nf~ya~kLWg~v~Gd---s~l~dRAnl~l~i~~nalN~Y 628 (760)
T COG5498 592 YNFWYAMKLWGEVTGD---SALEDRANLMLGIERNALNEY 628 (760)
T ss_pred HHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHHhhh
Confidence 2344445556888886 678899988888777666554
No 355
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=23.23 E-value=1.7e+02 Score=32.28 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=37.4
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHH
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 552 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~ 552 (840)
+.+++|+.+|+++..+...+..+|++|.+.+. |..|.-+ =..-++.+|..|..
T Consensus 136 s~~EIA~~Lgis~~tVr~~l~RAr~~Lr~~~~-~~~~~~~------~~~~~~~~f~~a~~ 188 (290)
T PRK09635 136 PYQQIATTIGSQASTCRQLAHRARRKINESRI-AASVEPA------QHRVVTRAFIEACS 188 (290)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHhhCC-CCCCChH------HHHHHHHHHHHHHH
Confidence 45789999999999999999999999988543 2122211 12455666666654
No 356
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=23.07 E-value=2e+02 Score=32.06 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=38.5
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcC--CCCCCCcchhhhcHHHHHHHHHHHHH
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFDVRSK--RPRPHLDDKVIVSWNGLVISSFARAS 551 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~--R~~P~~DdKiltsWNal~I~ALa~A~ 551 (840)
+..++|+.+|+++..+...|..+|++|.+.|.+ +..|..|.. =|--++.++..|.
T Consensus 171 s~~EIA~~lgis~~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~----~~~~~v~~~~~A~ 227 (339)
T PRK08241 171 SAAEVAELLDTSVAAVNSALQRARATLAERGPSAADTLREPDDP----EERALLARYVAAF 227 (339)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHhhcCCCcccccCCCCCh----HHHHHHHHHHHHH
Confidence 467999999999999999999999999984321 112444433 2444555555554
No 357
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=22.87 E-value=41 Score=31.75 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=40.9
Q ss_pred CCCEEEEEeccCChhhhhhhhcccC----CHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFE----DEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~----d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
+...+|.|..+ |. .. .|++. =||+.+.+...+-..-|+.+..+.+...| |+..||+.||+-.
T Consensus 26 ~~~~vlf~~gD-p~---r~-~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~--------gv~~~PaLvf~R~- 91 (107)
T PF07449_consen 26 PGDAVLFFAGD-PA---RF-PETADVAVILPELVKAFPGRFRGAVVARAAERALAARF--------GVRRWPALVFFRD- 91 (107)
T ss_dssp CSCEEEEESS--TT---TS-TTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHH--------T-TSSSEEEEEET-
T ss_pred CCcEEEEECCC-CC---cC-cccccceeEcHHHHHhhhCccceEEECchhHHHHHHHh--------CCccCCeEEEEEC-
Confidence 44455555543 33 32 34443 26666666667777777766556666666 8899999999876
Q ss_pred Cceec
Q 003187 214 LKPLM 218 (840)
Q Consensus 214 g~~~~ 218 (840)
|+++.
T Consensus 92 g~~lG 96 (107)
T PF07449_consen 92 GRYLG 96 (107)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 45543
No 358
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=22.67 E-value=2.8e+02 Score=33.49 Aligned_cols=102 Identities=11% Similarity=0.037 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHH---HHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee---cCCCCCC--
Q 003187 538 SWNGLVISSFAR---ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF---RNGPSKA-- 609 (840)
Q Consensus 538 sWNal~I~ALa~---A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~---~~g~~~~-- 609 (840)
.|=||-.|++-| .|-++|| ++....-.+-..+++++..-..+|.+..-. =.|+|+.
T Consensus 404 ~WfG~Q~Wsm~R~AeyYy~tGd----------------~~ak~ildKWv~W~~~~~~~~~dG~f~IPs~L~WSGqPDtW~ 467 (619)
T PF02011_consen 404 RWFGMQAWSMERVAEYYYETGD----------------ARAKAILDKWVAWALSNTTVNSDGTFEIPSTLEWSGQPDTWT 467 (619)
T ss_dssp TBTHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHTT-EE-TTS-EEEEEEEEEES-----T
T ss_pred CcccccchhHHHHHHHHHHhcc----------------HHHHHHHHHHHHHHHhhceeCCCCcEecCCCCcccCCCCCcc
Confidence 477887776544 5556777 556666777788888875433345443210 0244421
Q ss_pred ---------C----CCcchH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccC
Q 003187 610 ---------P----GFLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 655 (840)
Q Consensus 610 ---------~----~~leDy---A~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~ 655 (840)
. ..-.|- +.++.+|+-....+++.+.++.|++|++.+.++..|..+
T Consensus 468 ~s~t~N~nLHV~V~~yg~DvGva~S~AktL~yYAA~sg~~~Ak~~Ak~LLD~iW~~~~D~~G 529 (619)
T PF02011_consen 468 GSPTGNPNLHVTVTDYGQDVGVAGSYAKTLTYYAAKSGDQEAKDTAKQLLDAIWNNYQDDKG 529 (619)
T ss_dssp TS----TTEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCECTTC
T ss_pred CCCCCCCceEEEEecCCCchhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhCCCCCc
Confidence 1 111232 568888998889999999999999999999998887643
No 359
>PRK13272 treA trehalase; Provisional
Probab=22.28 E-value=1.5e+03 Score=27.62 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=60.4
Q ss_pred hcHHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee--cCCCCCCCC
Q 003187 537 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF--RNGPSKAPG 611 (840)
Q Consensus 537 tsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~--~~g~~~~~~ 611 (840)
++-|+++.. .|++.++.+|+.. ...+|.+.|.+..+.|.+.|||+ .|.+ ..| +.++
T Consensus 340 VDLNalL~~~e~~LA~~~~~lG~~~------------~a~~~~~~A~~r~~aI~~~lWde-~G~~-~DYD~~~~~----- 400 (542)
T PRK13272 340 VDLNSLLYHLERTLAQACASSGLAA------------CSQDYAALAQQRKQAIDAHLWNP-AGYY-ADYDWQTRT----- 400 (542)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCChH------------HHHHHHHHHHHHHHHHHHhccCc-CceE-EeeccCCCC-----
Confidence 457888866 5666677777521 12568899999999999999996 5544 433 3332
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCcccc
Q 003187 612 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 660 (840)
Q Consensus 612 ~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 660 (840)
..++ +.+.+++=|+-=.-++ +.|..+.+.+..+|.. .||.-.
T Consensus 401 -~~~~-~s~a~f~PLwag~a~~---~~a~~l~~~l~~~~l~--~gGlpT 442 (542)
T PRK13272 401 -LSEQ-VTAAALYPLFAGLASD---DRAKRTADSVRAQLLR--PGGLAT 442 (542)
T ss_pred -cccc-ccHHHHHHHHcCCCCH---HHHHHHHHHHHHhccC--CCCcCC
Confidence 2233 4466777777433332 4566677766666653 355443
No 360
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=21.84 E-value=1e+02 Score=36.83 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=38.2
Q ss_pred hhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 003187 453 EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 522 (840)
Q Consensus 453 ~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~ 522 (840)
.+..++..+||+.... ..++.++++.+|++.++++++-.++..||+..
T Consensus 451 REr~VI~lRyGL~~~e----------------------~~TL~EIa~~lGVSrERVRQIe~kAL~KLR~~ 498 (509)
T PRK05901 451 REAGVIRMRFGLTDGQ----------------------PKTLDEIGQVYGVTRERIRQIESKTLRKLRHP 498 (509)
T ss_pred HHHHHHHHHhhccCCC----------------------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3467888889984211 13568999999999999999999999999873
No 361
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=21.52 E-value=1.1e+03 Score=25.96 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhccCCCCceEe
Q 003187 404 ICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 404 ~A~~t~~fl~r~m~~~~Ggfys 425 (840)
..+++++||.+ .+.++|||-.
T Consensus 147 ~~~~~~~~l~~-cQ~~dGGF~~ 167 (299)
T cd02893 147 LFEGVAEYILS-CQTYEGGFGG 167 (299)
T ss_pred hHHHHHHHHHH-cCCCCCCcCC
Confidence 46789999986 7788999953
No 362
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=21.25 E-value=4.7e+02 Score=33.30 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcC--CH--HHHHHHHHHHHHHHHHcccccCCccccCCCC
Q 003187 617 AFLISGLLDLYEFGS--GT--KWLVWAIELQNTQDELFLDREGGGYFNTTGE 664 (840)
Q Consensus 617 A~~i~aLl~LYeaTg--d~--~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~ 664 (840)
|++...++.+...-+ |+ +|.+.+..|.+.+.+..||++.|.||+....
T Consensus 565 a~~a~~M~~IA~~L~~~d~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~~~~ 616 (801)
T PF03200_consen 565 AFFALNMARIALELGKEDDAYEFFEHFEYISDALNKLHWDEEDGFYYDVGLH 616 (801)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcccCceeeeccc
Confidence 344445555444433 33 3559999999999999999999989886543
No 363
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=20.20 E-value=3.6e+02 Score=28.69 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 003187 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (840)
Q Consensus 336 ~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~ 415 (840)
++.+.+...++.+.. +-.-+|||--|..+ . +--.+.-|..+.++.++.+.. +.-..+..++++||.+.
T Consensus 46 ~~~~~i~~~~~~l~~---~Q~~dGgf~~w~~~------~-~~~~~~Ta~~~~~L~~a~~~~--~v~~~~i~ra~~~L~~~ 113 (282)
T cd02891 46 KALEYIRKGYQRLLT---YQRSDGSFSAWGNS------D-SGSTWLTAYVVKFLSQARKYI--DVDENVLARALGWLVPQ 113 (282)
T ss_pred HHHHHHHHHHHHHHh---hcCCCCCccccCCC------C-CCchHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhc
Confidence 455666666666554 22367898533221 1 344577888999999887765 23346889999999986
Q ss_pred ccCCCCceEe
Q 003187 416 MIGPGGEIFS 425 (840)
Q Consensus 416 m~~~~Ggfys 425 (840)
+.++|+|..
T Consensus 114 -q~~~g~~~~ 122 (282)
T cd02891 114 -QKEDGSFRE 122 (282)
T ss_pred -cCCCCCcCC
Confidence 566787754
No 364
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=20.17 E-value=3.5e+02 Score=23.85 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=36.5
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
-++...|+||++..- +.+..+-.|-.+.+|..+.++ .+ ...+..+.+|..+. .+|..++.
T Consensus 21 Ly~~~~sp~~~kv~~-------~L~~~gl~~~~~~v~~~~~~~---~~----~~~np~~~vPvL~~--~~g~~l~e 80 (89)
T cd03055 21 LYSMRFCPYAQRARL-------VLAAKNIPHEVININLKDKPD---WF----LEKNPQGKVPALEI--DEGKVVYE 80 (89)
T ss_pred EEeCCCCchHHHHHH-------HHHHcCCCCeEEEeCCCCCcH---HH----HhhCCCCCcCEEEE--CCCCEEEC
Confidence 357888999998742 233334457777888764321 12 22356778898873 34666654
Done!