Query 003187
Match_columns 840
No_of_seqs 381 out of 1804
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:26:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ira_A Conserved protein; meth 100.0 2.2E-45 7.6E-50 368.2 17.5 168 101-268 2-169 (173)
2 1fp3_A N-acyl-D-glucosamine 2- 100.0 7.5E-35 2.6E-39 327.1 22.2 335 285-692 19-391 (402)
3 2gz6_A N-acetyl-D-glucosamine 100.0 3.3E-34 1.1E-38 319.7 21.2 253 342-719 18-272 (388)
4 2zbl_A Putative isomerase; N-a 100.0 2.5E-32 8.4E-37 309.3 23.6 305 285-724 17-355 (421)
5 3gt5_A N-acetylglucosamine 2-e 99.9 2.6E-25 9E-30 250.3 22.9 259 339-718 13-281 (402)
6 2dlx_A UBX domain-containing p 99.9 2.9E-23 9.9E-28 203.9 13.6 124 100-242 10-135 (153)
7 1fp3_A N-acyl-D-glucosamine 2- 99.9 5.2E-22 1.8E-26 222.7 25.7 314 339-721 17-350 (402)
8 3gt5_A N-acetylglucosamine 2-e 99.9 1.7E-22 5.7E-27 227.5 21.7 340 285-693 15-388 (402)
9 2gz6_A N-acetyl-D-glucosamine 99.9 1.1E-21 3.9E-26 218.4 26.4 340 283-693 15-382 (388)
10 2zbl_A Putative isomerase; N-a 99.9 4E-22 1.4E-26 225.7 21.6 246 353-721 27-289 (421)
11 2zzr_A Unsaturated glucuronyl 99.9 4.3E-21 1.5E-25 214.8 21.8 256 315-721 74-346 (397)
12 2ahf_A Unsaturated glucuronyl 99.8 3.3E-19 1.1E-23 198.6 21.4 258 314-721 47-321 (377)
13 3ph9_A Anterior gradient prote 99.8 1.5E-19 5.1E-24 177.1 11.1 121 118-247 24-146 (151)
14 3k7x_A LIN0763 protein; Q92DQ0 99.7 3.3E-16 1.1E-20 173.2 27.2 240 314-715 51-296 (349)
15 3f9u_A Putative exported cytoc 99.7 2.7E-17 9.3E-22 162.1 12.2 129 112-247 22-170 (172)
16 2ju5_A Thioredoxin disulfide i 99.7 2.3E-17 7.9E-22 160.7 10.3 123 99-223 9-136 (154)
17 3fk8_A Disulphide isomerase; A 99.5 2.3E-14 7.9E-19 134.8 9.0 112 121-241 12-131 (133)
18 3h7l_A Endoglucanase; dehydrog 99.5 2.1E-13 7.1E-18 158.6 17.5 148 538-719 250-397 (586)
19 2lst_A Thioredoxin; structural 99.2 5.5E-15 1.9E-19 138.3 0.0 98 120-226 2-105 (130)
20 2kuc_A Putative disulphide-iso 99.4 4E-13 1.4E-17 125.4 9.8 92 120-219 8-102 (130)
21 3k7x_A LIN0763 protein; Q92DQ0 99.4 6.8E-12 2.3E-16 138.7 20.0 202 379-721 44-249 (349)
22 2fwh_A Thiol:disulfide interch 99.3 1.3E-12 4.5E-17 123.6 6.9 108 121-241 16-126 (134)
23 2ahf_A Unsaturated glucuronyl 99.3 5.2E-11 1.8E-15 132.7 20.0 253 334-698 106-368 (377)
24 3pmm_A Putative cytoplasmic pr 99.3 3E-11 1E-15 135.1 16.3 177 501-722 20-207 (382)
25 2zzr_A Unsaturated glucuronyl 99.2 7.9E-11 2.7E-15 131.9 17.2 211 334-652 132-348 (397)
26 2ec4_A FAS-associated factor 1 99.2 2.4E-11 8.2E-16 122.0 9.0 122 118-246 30-171 (178)
27 3dml_A Putative uncharacterize 99.2 1.2E-11 4.3E-16 115.5 4.7 91 138-244 18-111 (116)
28 3k11_A Putative glycosyl hydro 99.2 8.1E-11 2.8E-15 133.4 12.2 186 503-721 27-240 (445)
29 1sen_A Thioredoxin-like protei 99.2 6.2E-11 2.1E-15 116.6 9.7 91 118-219 27-119 (164)
30 1ep7_A Thioredoxin CH1, H-type 99.1 7.6E-11 2.6E-15 106.6 8.8 87 121-219 7-93 (112)
31 1ti3_A Thioredoxin H, PTTRXH1; 99.1 1.8E-10 6.3E-15 104.1 9.2 103 121-242 9-111 (113)
32 3gnj_A Thioredoxin domain prot 99.1 2.6E-10 8.8E-15 102.7 10.1 84 124-219 7-91 (111)
33 3zzx_A Thioredoxin; oxidoreduc 99.1 1.4E-10 4.9E-15 106.0 8.0 77 128-219 12-88 (105)
34 2l57_A Uncharacterized protein 99.1 7.9E-11 2.7E-15 109.4 6.3 76 133-219 21-98 (126)
35 3hxs_A Thioredoxin, TRXP; elec 99.1 1.9E-10 6.4E-15 108.9 8.7 77 137-224 50-126 (141)
36 3f3q_A Thioredoxin-1; His TAG, 99.1 2E-10 7E-15 104.4 8.6 80 127-219 13-92 (109)
37 1nc5_A Hypothetical protein YT 99.1 4.5E-09 1.5E-13 117.0 21.0 257 310-719 42-313 (373)
38 1nsw_A Thioredoxin, TRX; therm 99.1 7.1E-11 2.4E-15 105.6 5.2 79 129-219 8-86 (105)
39 1nc5_A Hypothetical protein YT 99.1 5.7E-10 1.9E-14 124.3 13.4 142 536-722 36-180 (373)
40 3pmm_A Putative cytoplasmic pr 99.1 4.4E-09 1.5E-13 117.5 20.3 249 313-721 72-333 (382)
41 2l5l_A Thioredoxin; structural 99.1 3.1E-10 1.1E-14 107.3 9.4 72 136-218 36-107 (136)
42 3tco_A Thioredoxin (TRXA-1); d 99.1 1.7E-10 5.7E-15 103.3 7.0 79 129-219 12-90 (109)
43 1dby_A Chloroplast thioredoxin 99.1 4.4E-10 1.5E-14 100.7 9.6 85 128-224 8-94 (107)
44 3qfa_C Thioredoxin; protein-pr 99.1 2.8E-10 9.6E-15 104.8 8.4 79 128-219 19-99 (116)
45 1xfl_A Thioredoxin H1; AT3G510 99.1 2.5E-10 8.7E-15 106.6 8.2 86 121-219 21-106 (124)
46 2vm1_A Thioredoxin, thioredoxi 99.0 3.2E-10 1.1E-14 103.2 8.0 86 121-219 11-96 (118)
47 2voc_A Thioredoxin; electron t 99.0 2.6E-10 9E-15 103.9 7.0 77 130-219 10-86 (112)
48 2trx_A Thioredoxin; electron t 99.0 4E-10 1.4E-14 101.1 8.0 74 134-219 16-89 (108)
49 1w4v_A Thioredoxin, mitochondr 99.0 5.4E-10 1.8E-14 103.1 8.8 80 128-219 20-100 (119)
50 3d22_A TRXH4, thioredoxin H-ty 99.0 3.6E-10 1.2E-14 106.8 7.8 86 121-219 29-114 (139)
51 1syr_A Thioredoxin; SGPP, stru 99.0 3.6E-10 1.2E-14 102.9 7.3 92 115-219 3-94 (112)
52 2dml_A Protein disulfide-isome 99.0 9.6E-10 3.3E-14 102.3 9.8 72 134-216 31-102 (130)
53 3k11_A Putative glycosyl hydro 99.0 8.2E-09 2.8E-13 117.1 19.2 269 309-721 82-365 (445)
54 3ul3_B Thioredoxin, thioredoxi 99.0 8.9E-11 3E-15 109.8 2.6 80 128-219 32-111 (128)
55 2vlu_A Thioredoxin, thioredoxi 99.0 8.5E-10 2.9E-14 101.5 9.0 80 127-219 23-102 (122)
56 2yzu_A Thioredoxin; redox prot 99.0 3.4E-10 1.2E-14 101.1 6.0 78 130-219 10-87 (109)
57 2av4_A Thioredoxin-like protei 99.0 4.6E-10 1.6E-14 109.9 7.2 70 136-217 39-108 (160)
58 2i4a_A Thioredoxin; acidophIle 99.0 6.6E-10 2.3E-14 99.2 7.6 73 135-219 17-89 (107)
59 1wmj_A Thioredoxin H-type; str 99.0 4E-10 1.4E-14 104.6 6.2 86 121-219 19-104 (130)
60 3d6i_A Monothiol glutaredoxin- 99.0 1E-09 3.6E-14 99.4 8.6 72 136-219 19-91 (112)
61 1oaz_A Thioredoxin 1; immune s 99.0 1.3E-10 4.5E-15 108.6 2.6 78 133-219 16-104 (123)
62 3hz4_A Thioredoxin; NYSGXRC, P 99.0 2E-09 6.8E-14 102.4 10.6 80 128-219 13-93 (140)
63 4euy_A Uncharacterized protein 99.0 1.5E-10 5.1E-15 104.2 2.6 77 130-219 10-86 (105)
64 1fb6_A Thioredoxin M; electron 99.0 9.6E-10 3.3E-14 97.8 7.7 74 134-219 14-87 (105)
65 2f51_A Thioredoxin; electron t 99.0 9.1E-10 3.1E-14 101.8 7.8 80 128-219 12-95 (118)
66 3die_A Thioredoxin, TRX; elect 99.0 6E-10 2E-14 99.3 6.3 78 129-219 11-88 (106)
67 3aps_A DNAJ homolog subfamily 99.0 8.7E-10 3E-14 101.4 7.6 78 128-216 10-88 (122)
68 1t00_A Thioredoxin, TRX; redox 99.0 9.3E-10 3.2E-14 99.5 7.5 76 132-219 17-92 (112)
69 1gh2_A Thioredoxin-like protei 99.0 1.6E-09 5.5E-14 97.4 9.0 77 128-219 13-89 (107)
70 3m9j_A Thioredoxin; oxidoreduc 99.0 1.4E-09 4.8E-14 96.9 8.5 70 137-219 19-88 (105)
71 2dj1_A Protein disulfide-isome 99.0 8.8E-10 3E-14 103.9 7.4 77 128-216 24-103 (140)
72 3gix_A Thioredoxin-like protei 98.9 1.1E-09 3.7E-14 106.1 7.8 78 128-217 11-90 (149)
73 2j23_A Thioredoxin; immune pro 98.9 1E-09 3.5E-14 101.6 7.3 80 128-219 23-103 (121)
74 2oe3_A Thioredoxin-3; electron 98.9 8.9E-10 3E-14 101.3 6.7 80 127-219 19-98 (114)
75 2o8v_B Thioredoxin 1; disulfid 98.9 8.8E-10 3E-14 103.6 6.6 73 135-219 37-109 (128)
76 2ppt_A Thioredoxin-2; thiredox 98.9 1.9E-09 6.7E-14 104.9 9.2 80 128-219 54-133 (155)
77 3p2a_A Thioredoxin 2, putative 98.9 1.8E-09 6.3E-14 103.2 8.8 80 128-219 45-124 (148)
78 1xwb_A Thioredoxin; dimerizati 98.9 1.9E-09 6.5E-14 96.0 8.3 71 137-219 19-89 (106)
79 1r26_A Thioredoxin; redox-acti 98.9 2.2E-09 7.4E-14 100.7 9.0 78 129-219 28-105 (125)
80 1x5d_A Protein disulfide-isome 98.9 2.8E-09 9.6E-14 99.2 9.7 73 134-218 21-97 (133)
81 2e0q_A Thioredoxin; electron t 98.9 1.2E-09 4E-14 96.5 6.7 78 129-219 7-84 (104)
82 2wz9_A Glutaredoxin-3; protein 98.9 2E-09 6.7E-14 104.1 8.6 79 128-219 20-100 (153)
83 1thx_A Thioredoxin, thioredoxi 98.9 1.9E-09 6.4E-14 97.5 7.8 73 135-219 22-94 (115)
84 2vim_A Thioredoxin, TRX; thior 98.9 3.9E-09 1.3E-13 93.6 8.9 78 129-219 8-87 (104)
85 2i1u_A Thioredoxin, TRX, MPT46 98.9 1.1E-09 3.8E-14 100.2 5.2 77 131-219 23-99 (121)
86 2xc2_A Thioredoxinn; oxidoredu 98.9 3.4E-09 1.2E-13 97.0 8.4 75 128-219 25-100 (117)
87 1qgv_A Spliceosomal protein U5 98.9 3.3E-09 1.1E-13 101.8 8.2 79 128-218 11-91 (142)
88 1mek_A Protein disulfide isome 98.8 1.4E-09 4.7E-14 98.8 4.4 77 129-217 15-94 (120)
89 2dj3_A Protein disulfide-isome 98.8 3.8E-09 1.3E-13 98.6 7.1 69 136-215 23-93 (133)
90 3apq_A DNAJ homolog subfamily 98.8 7.4E-09 2.5E-13 105.3 9.7 81 127-219 103-183 (210)
91 2pu9_C TRX-F, thioredoxin F-ty 98.8 7.7E-09 2.6E-13 93.6 8.7 70 137-219 23-93 (111)
92 3cxg_A Putative thioredoxin; m 98.8 2.4E-09 8.2E-14 101.3 5.5 76 128-219 32-111 (133)
93 3qou_A Protein YBBN; thioredox 98.8 6.7E-09 2.3E-13 110.2 9.1 72 136-219 24-95 (287)
94 2l6c_A Thioredoxin; oxidoreduc 98.8 2.6E-09 8.9E-14 97.2 4.8 80 133-225 14-94 (110)
95 3dxb_A Thioredoxin N-terminall 98.8 6.7E-09 2.3E-13 106.8 7.3 80 128-219 19-99 (222)
96 1zma_A Bacterocin transport ac 98.8 2.8E-09 9.5E-14 97.9 3.5 88 124-219 15-102 (118)
97 1faa_A Thioredoxin F; electron 98.8 1.6E-08 5.5E-13 93.3 8.6 71 136-219 35-106 (124)
98 2qsi_A Putative hydrogenase ex 98.8 6.2E-09 2.1E-13 100.0 5.7 97 117-225 11-111 (137)
99 3uvt_A Thioredoxin domain-cont 98.7 2.1E-08 7.1E-13 89.9 8.6 67 138-219 21-93 (111)
100 2yj7_A LPBCA thioredoxin; oxid 98.2 1.2E-09 4E-14 96.8 0.0 75 133-219 14-88 (106)
101 3hcz_A Possible thiol-disulfid 98.7 1.4E-08 4.6E-13 95.7 7.3 100 135-245 28-145 (148)
102 3h79_A Thioredoxin-like protei 98.7 1.9E-08 6.5E-13 93.6 8.1 69 136-215 31-104 (127)
103 2qgv_A Hydrogenase-1 operon pr 98.7 5.8E-09 2E-13 100.5 4.4 91 122-224 18-112 (140)
104 2dj0_A Thioredoxin-related tra 98.7 2.5E-08 8.6E-13 94.1 8.6 81 134-226 22-110 (137)
105 1v98_A Thioredoxin; oxidoreduc 98.7 2.2E-08 7.4E-13 94.8 7.6 80 128-219 40-119 (140)
106 1x5e_A Thioredoxin domain cont 98.7 2.7E-08 9.1E-13 92.2 7.3 66 140-217 24-90 (126)
107 2djj_A PDI, protein disulfide- 98.7 2.5E-08 8.4E-13 91.4 6.7 67 135-215 22-93 (121)
108 2b5x_A YKUV protein, TRXY; thi 98.6 6.5E-08 2.2E-12 90.8 9.1 84 132-219 23-126 (148)
109 2b1k_A Thiol:disulfide interch 98.6 3.6E-08 1.2E-12 95.7 7.4 95 136-243 49-160 (168)
110 1z6n_A Hypothetical protein PA 98.6 3E-08 1E-12 98.3 6.7 95 136-246 52-146 (167)
111 3ewl_A Uncharacterized conserv 98.6 2.9E-08 9.8E-13 93.4 6.1 84 136-219 25-125 (142)
112 1fo5_A Thioredoxin; disulfide 98.6 3.3E-08 1.1E-12 84.6 5.7 64 139-216 3-66 (85)
113 1wou_A Thioredoxin -related pr 98.6 5.8E-08 2E-12 90.2 7.7 79 129-219 13-107 (123)
114 4evm_A Thioredoxin family prot 98.6 3.6E-08 1.2E-12 90.7 6.2 82 135-219 19-120 (138)
115 3idv_A Protein disulfide-isome 98.6 4.1E-08 1.4E-12 100.7 7.2 78 128-217 22-102 (241)
116 3emx_A Thioredoxin; structural 98.6 3.5E-08 1.2E-12 93.2 5.7 87 128-224 23-113 (135)
117 3or5_A Thiol:disulfide interch 98.6 1.3E-07 4.3E-12 91.0 9.7 82 135-219 31-132 (165)
118 1lu4_A Soluble secreted antige 98.6 6.7E-08 2.3E-12 89.5 7.4 81 133-217 19-113 (136)
119 1nho_A Probable thioredoxin; b 98.6 4.7E-08 1.6E-12 83.6 5.8 63 140-216 3-65 (85)
120 2lja_A Putative thiol-disulfid 98.6 1.2E-07 4.2E-12 89.9 9.1 82 136-220 28-125 (152)
121 3raz_A Thioredoxin-related pro 98.6 9.7E-08 3.3E-12 91.1 8.0 82 133-219 19-121 (151)
122 1zzo_A RV1677; thioredoxin fol 98.6 1.5E-07 5.1E-12 86.8 8.6 81 133-217 20-115 (136)
123 3gl3_A Putative thiol:disulfid 98.6 2.3E-07 7.8E-12 88.0 10.1 89 133-224 23-127 (152)
124 1a8l_A Protein disulfide oxido 98.5 1E-07 3.5E-12 97.2 8.1 81 127-219 122-207 (226)
125 2f9s_A Thiol-disulfide oxidore 98.5 2E-07 7E-12 88.5 9.2 83 134-219 22-119 (151)
126 2lrn_A Thiol:disulfide interch 98.5 3.9E-07 1.3E-11 86.9 11.1 80 137-219 28-125 (152)
127 3erw_A Sporulation thiol-disul 98.5 7.1E-08 2.4E-12 90.2 5.8 85 137-224 33-136 (145)
128 3hdc_A Thioredoxin family prot 98.5 2.2E-07 7.6E-12 89.4 9.0 82 134-226 37-139 (158)
129 3kcm_A Thioredoxin family prot 98.5 2.8E-07 9.4E-12 87.7 9.2 102 134-242 24-142 (154)
130 3kh7_A Thiol:disulfide interch 98.5 2E-07 6.9E-12 92.0 8.4 82 132-219 52-148 (176)
131 3fkf_A Thiol-disulfide oxidore 98.5 2.2E-07 7.4E-12 87.3 7.8 81 137-220 32-131 (148)
132 2h30_A Thioredoxin, peptide me 98.5 4.7E-08 1.6E-12 94.1 2.9 74 132-219 32-137 (164)
133 1kng_A Thiol:disulfide interch 98.5 5.1E-07 1.7E-11 85.8 10.1 80 133-219 37-133 (156)
134 3kp8_A Vkorc1/thioredoxin doma 98.4 6.1E-08 2.1E-12 88.6 2.6 73 128-218 2-78 (106)
135 3ha9_A Uncharacterized thiored 98.4 4.9E-07 1.7E-11 87.3 8.9 82 135-223 34-149 (165)
136 3idv_A Protein disulfide-isome 98.4 3.6E-07 1.2E-11 93.6 8.4 78 129-218 138-218 (241)
137 3eur_A Uncharacterized protein 98.4 2.7E-07 9.3E-12 87.0 6.8 85 136-220 29-130 (142)
138 3s9f_A Tryparedoxin; thioredox 98.4 4E-07 1.4E-11 89.0 8.2 83 134-219 44-145 (165)
139 1i5g_A Tryparedoxin II; electr 98.4 7.7E-07 2.6E-11 84.0 9.7 82 134-219 24-125 (144)
140 3q6o_A Sulfhydryl oxidase 1; p 98.4 5.1E-07 1.7E-11 93.7 8.9 70 135-215 27-101 (244)
141 2es7_A Q8ZP25_salty, putative 98.4 5.4E-08 1.8E-12 93.8 1.2 78 129-219 25-106 (142)
142 3lor_A Thiol-disulfide isomera 98.4 3.9E-07 1.3E-11 87.2 7.3 84 133-219 25-136 (160)
143 1ilo_A Conserved hypothetical 98.4 4.4E-07 1.5E-11 76.3 6.4 65 141-223 2-66 (77)
144 3h7l_A Endoglucanase; dehydrog 98.4 4.5E-06 1.5E-10 97.4 16.9 221 298-648 134-397 (586)
145 3eyt_A Uncharacterized protein 98.4 7.2E-07 2.4E-11 85.3 8.5 84 133-219 23-133 (158)
146 2ls5_A Uncharacterized protein 97.7 4.5E-08 1.5E-12 94.2 0.0 108 129-244 24-149 (159)
147 1o73_A Tryparedoxin; electron 98.4 6.5E-07 2.2E-11 84.2 8.0 82 134-219 24-125 (144)
148 1o8x_A Tryparedoxin, TRYX, TXN 98.4 1.2E-06 4.1E-11 82.9 9.8 82 134-219 24-125 (146)
149 3ed3_A Protein disulfide-isome 98.4 8.5E-07 2.9E-11 95.6 9.8 84 120-214 16-102 (298)
150 2dbc_A PDCL2, unnamed protein 98.4 9.9E-07 3.4E-11 83.4 9.0 67 137-219 29-95 (135)
151 2l5o_A Putative thioredoxin; s 98.4 1.2E-06 3.9E-11 83.2 9.5 80 136-219 26-122 (153)
152 2lrt_A Uncharacterized protein 98.3 1.4E-06 4.8E-11 83.6 9.7 79 137-219 34-129 (152)
153 3lwa_A Secreted thiol-disulfid 98.3 8.4E-07 2.9E-11 87.4 8.4 86 131-219 52-162 (183)
154 2r2j_A Thioredoxin domain-cont 98.3 7.3E-07 2.5E-11 99.0 8.2 76 130-217 14-95 (382)
155 2ywm_A Glutaredoxin-like prote 98.3 8.1E-07 2.8E-11 90.9 7.9 75 127-216 124-199 (229)
156 1sji_A Calsequestrin 2, calseq 98.3 6.1E-07 2.1E-11 98.3 7.3 79 127-217 17-102 (350)
157 3ia1_A THIO-disulfide isomeras 98.3 5.7E-07 2E-11 85.6 5.4 78 139-219 31-125 (154)
158 2lus_A Thioredoxion; CR-Trp16, 97.6 1.1E-07 3.8E-12 89.1 0.0 83 136-222 23-127 (143)
159 3iv4_A Putative oxidoreductase 98.2 1.6E-06 5.5E-11 80.3 7.2 80 127-220 13-97 (112)
160 3f8u_A Protein disulfide-isome 98.2 8.7E-07 3E-11 101.0 6.5 70 134-215 366-437 (481)
161 2b5e_A Protein disulfide-isome 98.2 1.7E-06 6E-11 99.2 9.0 74 130-215 23-97 (504)
162 3fw2_A Thiol-disulfide oxidore 98.2 4.4E-06 1.5E-10 79.4 10.2 81 137-220 32-133 (150)
163 4fo5_A Thioredoxin-like protei 98.2 4E-06 1.4E-10 79.0 9.1 78 136-219 30-129 (143)
164 2e7p_A Glutaredoxin; thioredox 98.2 3.1E-06 1.1E-10 77.1 7.6 76 129-219 11-86 (116)
165 3ga4_A Dolichyl-diphosphooligo 98.2 2.2E-06 7.4E-11 85.9 7.1 71 136-217 35-117 (178)
166 2cvb_A Probable thiol-disulfid 98.2 4.1E-06 1.4E-10 82.8 8.8 81 136-219 31-132 (188)
167 1jfu_A Thiol:disulfide interch 98.1 1.1E-05 3.6E-10 79.6 10.5 81 136-219 58-159 (186)
168 1a0r_P Phosducin, MEKA, PP33; 98.1 1.6E-06 5.6E-11 91.0 4.8 69 137-219 132-200 (245)
169 3t58_A Sulfhydryl oxidase 1; o 98.1 5.8E-06 2E-10 95.9 9.5 72 135-217 27-106 (519)
170 3qcp_A QSOX from trypanosoma b 98.1 2.4E-06 8.3E-11 97.5 5.7 69 136-215 40-116 (470)
171 2ywi_A Hypothetical conserved 98.1 1.3E-05 4.4E-10 79.5 10.2 81 137-220 44-147 (196)
172 1ttz_A Conserved hypothetical 98.0 5.5E-06 1.9E-10 73.2 6.3 58 142-218 3-60 (87)
173 3f8u_A Protein disulfide-isome 98.0 3.9E-06 1.3E-10 95.5 6.9 76 130-217 10-88 (481)
174 2b5e_A Protein disulfide-isome 98.0 7.8E-06 2.7E-10 93.8 9.3 68 135-216 373-443 (504)
175 3us3_A Calsequestrin-1; calciu 98.0 5.9E-06 2E-10 91.4 7.8 78 131-217 23-104 (367)
176 2hls_A Protein disulfide oxido 98.0 9.4E-06 3.2E-10 84.7 8.8 77 128-218 127-208 (243)
177 2hyx_A Protein DIPZ; thioredox 98.0 9.7E-06 3.3E-10 89.6 8.7 84 132-219 76-180 (352)
178 2rli_A SCO2 protein homolog, m 98.0 1.6E-05 5.5E-10 76.8 8.8 79 137-219 25-145 (171)
179 3drn_A Peroxiredoxin, bacterio 98.0 2.8E-05 9.7E-10 75.0 10.2 80 137-220 27-127 (161)
180 3u5r_E Uncharacterized protein 97.9 2.6E-05 9E-10 79.7 9.9 81 137-220 57-160 (218)
181 2trc_P Phosducin, MEKA, PP33; 97.9 2.8E-06 9.6E-11 87.5 2.2 68 138-219 120-187 (217)
182 2ggt_A SCO1 protein homolog, m 97.9 7.9E-06 2.7E-10 78.3 5.3 79 137-219 22-142 (164)
183 3apo_A DNAJ homolog subfamily 97.9 1.3E-05 4.3E-10 97.1 8.2 79 128-218 664-743 (780)
184 3apo_A DNAJ homolog subfamily 97.9 1.3E-05 4.5E-10 96.9 7.9 80 126-217 121-200 (780)
185 3uem_A Protein disulfide-isome 97.9 8.8E-06 3E-10 89.0 5.6 68 135-215 264-334 (361)
186 2vup_A Glutathione peroxidase- 97.9 3.9E-05 1.3E-09 76.3 9.7 80 137-219 47-166 (190)
187 3e6u_A LANC-like protein 1; al 97.9 0.00052 1.8E-08 77.2 19.9 270 379-717 73-367 (411)
188 2djk_A PDI, protein disulfide- 97.9 2.8E-05 9.4E-10 73.2 8.0 76 129-216 14-92 (133)
189 2p5q_A Glutathione peroxidase 97.9 5.1E-05 1.7E-09 73.0 9.9 80 137-219 31-149 (170)
190 3cmi_A Peroxiredoxin HYR1; thi 97.8 2.6E-05 8.9E-10 76.0 7.3 79 137-219 31-149 (171)
191 3gzk_A Cellulase; fold from GH 97.8 7.3E-05 2.5E-09 86.9 11.8 90 537-644 242-334 (537)
192 1ks8_A Endo-B-1,4-glucanase; c 97.7 0.00016 5.6E-09 81.9 13.4 240 357-727 48-294 (433)
193 3evi_A Phosducin-like protein 97.7 1.2E-05 3.9E-10 75.1 3.2 67 138-220 23-89 (118)
194 3kij_A Probable glutathione pe 97.7 8.1E-05 2.8E-09 73.3 9.4 80 137-219 37-151 (180)
195 2bmx_A Alkyl hydroperoxidase C 97.7 5.4E-05 1.8E-09 75.6 7.8 80 137-220 44-148 (195)
196 2k8s_A Thioredoxin; dimer, str 97.7 1.6E-05 5.5E-10 68.0 3.2 61 142-219 4-68 (80)
197 1xvw_A Hypothetical protein RV 97.7 9.2E-05 3.1E-09 70.8 8.7 97 137-242 34-156 (160)
198 2v1m_A Glutathione peroxidase; 97.7 0.00015 5E-09 69.7 10.2 43 137-182 30-73 (169)
199 1we0_A Alkyl hydroperoxide red 97.6 8.1E-05 2.8E-09 73.6 7.7 78 137-219 30-134 (187)
200 2ywm_A Glutaredoxin-like prote 97.6 0.0002 6.7E-09 73.0 10.8 68 136-211 18-89 (229)
201 2fgx_A Putative thioredoxin; N 97.6 4.5E-05 1.5E-09 70.1 5.2 66 139-219 29-94 (107)
202 2c0g_A ERP29 homolog, windbeut 97.6 9.5E-05 3.3E-09 77.7 8.3 68 131-215 26-105 (248)
203 1ia6_A Cellulase CEL9M; cellul 97.6 0.00071 2.4E-08 76.8 15.8 181 357-643 50-237 (441)
204 3dwv_A Glutathione peroxidase- 97.6 6.4E-05 2.2E-09 74.7 6.1 42 137-181 45-87 (187)
205 1a8l_A Protein disulfide oxido 97.6 0.00016 5.5E-09 73.3 8.9 66 137-215 21-89 (226)
206 2jsy_A Probable thiol peroxida 97.6 0.00015 5E-09 70.1 8.2 99 137-243 43-164 (167)
207 1xzo_A BSSCO, hypothetical pro 97.5 0.0001 3.5E-09 71.3 6.3 80 137-219 32-151 (174)
208 1zof_A Alkyl hydroperoxide-red 97.5 0.0001 3.5E-09 73.7 6.5 80 137-220 32-139 (198)
209 2f8a_A Glutathione peroxidase 97.5 0.00036 1.2E-08 70.9 10.5 43 137-182 46-89 (208)
210 1wjk_A C330018D20RIK protein; 97.5 0.00013 4.4E-09 65.6 6.1 62 137-217 14-77 (100)
211 2p31_A CL683, glutathione pero 97.5 7.4E-05 2.5E-09 73.7 4.9 81 136-219 47-162 (181)
212 2k6v_A Putative cytochrome C o 97.5 4.8E-05 1.6E-09 73.4 3.4 79 137-219 34-152 (172)
213 3kp9_A Vkorc1/thioredoxin doma 97.4 3.1E-05 1.1E-09 83.3 1.8 73 128-218 187-263 (291)
214 2obi_A PHGPX, GPX-4, phospholi 97.4 0.00015 5.2E-09 71.4 6.5 43 137-182 46-89 (183)
215 1zye_A Thioredoxin-dependent p 97.4 0.00018 6.2E-09 73.7 7.2 79 137-220 55-163 (220)
216 1uul_A Tryparedoxin peroxidase 97.4 0.00027 9.1E-09 71.0 8.2 80 137-220 35-143 (202)
217 2h01_A 2-Cys peroxiredoxin; th 97.4 9.2E-05 3.1E-09 73.6 4.6 79 137-220 30-137 (192)
218 1clc_A Endoglucanase CELD; EC: 97.4 0.0014 5E-08 77.6 15.2 90 537-644 286-378 (639)
219 1qmv_A Human thioredoxin perox 97.4 0.00034 1.2E-08 69.8 8.5 79 137-220 33-141 (197)
220 2qc7_A ERP31, ERP28, endoplasm 97.4 0.00042 1.4E-08 72.5 9.2 70 130-215 14-94 (240)
221 1hyu_A AHPF, alkyl hydroperoxi 97.4 0.00028 9.6E-09 81.5 8.6 77 128-219 106-183 (521)
222 2gs3_A PHGPX, GPX-4, phospholi 97.3 0.00042 1.4E-08 68.5 8.5 43 137-182 48-91 (185)
223 1xvq_A Thiol peroxidase; thior 97.3 0.00043 1.5E-08 67.9 8.4 93 137-242 43-164 (175)
224 3ztl_A Thioredoxin peroxidase; 97.3 0.00034 1.1E-08 71.7 7.4 80 137-220 68-176 (222)
225 3gkn_A Bacterioferritin comigr 97.3 0.00064 2.2E-08 65.2 8.5 80 137-220 34-141 (163)
226 1eej_A Thiol:disulfide interch 97.2 0.0011 3.7E-08 67.6 9.9 24 136-159 84-107 (216)
227 2ht9_A Glutaredoxin-2; thiored 97.2 0.00065 2.2E-08 65.5 7.5 76 128-219 39-115 (146)
228 2i81_A 2-Cys peroxiredoxin; st 97.2 0.00062 2.1E-08 69.4 7.7 79 137-220 51-158 (213)
229 4hde_A SCO1/SENC family lipopr 97.1 0.0012 4.3E-08 64.6 9.3 43 136-181 30-78 (170)
230 4gqc_A Thiol peroxidase, perox 97.1 0.00055 1.9E-08 66.8 6.1 105 132-244 27-158 (164)
231 3hd5_A Thiol:disulfide interch 97.1 0.0023 7.9E-08 63.5 10.7 44 136-182 23-66 (195)
232 1tf4_A T. fusca endo/EXO-cellu 97.1 0.011 3.6E-07 69.8 17.8 85 539-643 152-240 (605)
233 1g87_A Endocellulase 9G; endog 97.0 0.025 8.6E-07 66.7 20.6 182 357-642 49-237 (614)
234 2cq9_A GLRX2 protein, glutared 97.0 0.0017 6E-08 60.9 8.8 76 128-219 17-93 (130)
235 2b7k_A SCO1 protein; metalloch 97.0 0.002 6.7E-08 64.7 9.5 22 137-158 40-62 (200)
236 2xfg_A Endoglucanase 1; hydrol 97.0 0.012 4E-07 67.3 16.4 185 357-642 70-259 (466)
237 4g2e_A Peroxiredoxin; redox pr 96.9 0.00055 1.9E-08 66.1 4.4 99 136-242 28-154 (157)
238 2hls_A Protein disulfide oxido 96.9 0.0016 5.4E-08 67.7 7.6 72 128-210 14-93 (243)
239 3h93_A Thiol:disulfide interch 96.8 0.0025 8.5E-08 63.2 8.3 40 137-179 24-63 (192)
240 3gyk_A 27KDA outer membrane pr 96.8 0.0012 4.2E-08 64.3 5.9 23 136-158 20-42 (175)
241 1t3b_A Thiol:disulfide interch 96.8 0.0016 5.5E-08 66.2 7.1 24 136-159 84-107 (211)
242 3c1r_A Glutaredoxin-1; oxidize 96.8 0.0034 1.2E-07 58.0 8.3 80 128-219 15-95 (118)
243 1kte_A Thioltransferase; redox 96.8 0.0045 1.5E-07 55.0 8.9 75 129-219 3-81 (105)
244 1ego_A Glutaredoxin; electron 96.8 0.00083 2.8E-08 57.2 3.8 67 142-219 3-71 (85)
245 2yik_A Endoglucanase; hydrolas 96.8 0.015 5E-07 68.7 15.5 86 540-643 219-306 (611)
246 3ixr_A Bacterioferritin comigr 96.8 0.0045 1.5E-07 60.9 9.5 78 137-219 50-156 (179)
247 2v8i_A Pectate lyase; periplas 96.7 0.27 9.3E-06 55.0 24.2 152 532-719 292-460 (543)
248 2hze_A Glutaredoxin-1; thiored 96.7 0.0019 6.4E-08 59.1 6.0 80 128-219 9-88 (114)
249 3p7x_A Probable thiol peroxida 96.7 0.0031 1.1E-07 61.0 7.8 96 137-242 45-164 (166)
250 2c0d_A Thioredoxin peroxidase 96.7 0.0019 6.4E-08 66.4 6.1 80 137-220 55-162 (221)
251 3rhb_A ATGRXC5, glutaredoxin-C 96.6 0.0076 2.6E-07 54.7 9.4 78 128-219 9-86 (113)
252 3a2v_A Probable peroxiredoxin; 96.6 0.0035 1.2E-07 65.8 8.0 97 137-242 32-158 (249)
253 1v58_A Thiol:disulfide interch 96.6 0.00097 3.3E-08 69.3 3.6 24 136-159 95-118 (241)
254 1psq_A Probable thiol peroxida 96.5 0.003 1E-07 60.8 6.2 36 205-243 127-162 (163)
255 1h75_A Glutaredoxin-like prote 96.5 0.0039 1.3E-07 52.6 6.1 60 142-218 3-62 (81)
256 2yan_A Glutaredoxin-3; oxidore 96.4 0.0059 2E-07 54.9 7.3 74 128-219 7-85 (105)
257 2g0d_A Nisin biosynthesis prot 96.4 0.15 5E-06 56.7 19.6 131 540-712 209-352 (409)
258 2lqo_A Putative glutaredoxin R 96.3 0.011 3.6E-07 52.6 8.2 62 143-219 7-69 (92)
259 3me7_A Putative uncharacterize 96.3 0.0096 3.3E-07 58.0 8.5 79 137-219 27-142 (170)
260 3hz8_A Thiol:disulfide interch 96.3 0.014 4.7E-07 58.4 9.7 43 137-182 23-65 (193)
261 3nzn_A Glutaredoxin; structura 96.2 0.014 4.7E-07 52.2 8.4 68 141-218 23-90 (103)
262 3msz_A Glutaredoxin 1; alpha-b 96.2 0.0072 2.4E-07 51.6 6.0 66 140-219 4-74 (89)
263 3h8q_A Thioredoxin reductase 3 96.1 0.018 6E-07 52.7 8.8 77 128-219 7-83 (114)
264 2i3y_A Epididymal secretory gl 96.1 0.021 7.3E-07 58.3 10.4 22 136-157 54-75 (215)
265 2yzh_A Probable thiol peroxida 96.0 0.0067 2.3E-07 58.8 5.8 20 137-156 46-66 (171)
266 3keb_A Probable thiol peroxida 96.0 0.03 1E-06 57.9 10.8 38 204-244 137-174 (224)
267 1fov_A Glutaredoxin 3, GRX3; a 96.0 0.013 4.6E-07 49.1 6.8 62 142-219 3-64 (82)
268 1r7h_A NRDH-redoxin; thioredox 96.0 0.008 2.7E-07 49.6 5.2 60 142-218 3-62 (75)
269 1x9d_A Endoplasmic reticulum m 96.0 0.58 2E-05 54.1 22.3 284 369-727 162-475 (538)
270 3qpm_A Peroxiredoxin; oxidored 95.9 0.011 3.9E-07 61.3 7.4 79 137-220 76-184 (240)
271 2a4v_A Peroxiredoxin DOT5; yea 95.9 0.0084 2.9E-07 57.3 5.7 76 137-219 34-132 (159)
272 2pn8_A Peroxiredoxin-4; thiore 95.9 0.011 3.8E-07 59.9 6.7 79 137-220 47-155 (211)
273 2rem_A Disulfide oxidoreductas 95.8 0.033 1.1E-06 54.8 9.8 24 137-160 24-47 (193)
274 3uem_A Protein disulfide-isome 95.8 0.01 3.4E-07 64.6 6.4 70 135-215 132-205 (361)
275 2r37_A Glutathione peroxidase 95.8 0.058 2E-06 54.6 11.7 20 137-156 37-56 (207)
276 3ctg_A Glutaredoxin-2; reduced 95.8 0.025 8.7E-07 53.1 8.3 79 128-218 27-106 (129)
277 3qmx_A Glutaredoxin A, glutare 95.7 0.015 5E-07 52.1 6.0 64 140-219 16-80 (99)
278 1n8j_A AHPC, alkyl hydroperoxi 95.6 0.025 8.7E-07 55.8 8.0 80 137-220 29-134 (186)
279 1x9d_A Endoplasmic reticulum m 95.5 0.22 7.6E-06 57.5 16.5 121 573-700 382-513 (538)
280 3tjj_A Peroxiredoxin-4; thiore 95.5 0.015 5E-07 61.1 6.2 20 137-156 90-110 (254)
281 2znm_A Thiol:disulfide interch 95.5 0.028 9.4E-07 55.5 7.8 23 137-159 21-43 (195)
282 1nxc_A Mannosyl-oligosaccharid 95.3 1.2 4.2E-05 50.8 21.5 284 371-729 100-411 (478)
283 2klx_A Glutaredoxin; thioredox 95.3 0.033 1.1E-06 47.9 6.7 60 142-219 8-68 (89)
284 3l4n_A Monothiol glutaredoxin- 95.2 0.038 1.3E-06 51.9 7.4 79 128-218 4-82 (127)
285 2ri9_A Mannosyl-oligosaccharid 95.2 5.6 0.00019 45.3 28.6 119 573-700 313-448 (475)
286 1wik_A Thioredoxin-like protei 95.2 0.041 1.4E-06 49.7 7.4 71 131-218 8-82 (109)
287 1hcu_A Alpha-1,2-mannosidase; 95.2 0.5 1.7E-05 54.3 17.9 36 618-653 393-428 (503)
288 3ic4_A Glutaredoxin (GRX-1); s 95.2 0.04 1.4E-06 47.5 7.0 67 142-219 14-80 (92)
289 3zrd_A Thiol peroxidase; oxido 95.1 0.017 5.7E-07 58.1 5.0 93 137-241 77-199 (200)
290 4eo3_A Bacterioferritin comigr 95.0 0.051 1.7E-06 59.0 8.7 132 137-292 23-174 (322)
291 2khp_A Glutaredoxin; thioredox 94.9 0.046 1.6E-06 47.2 6.6 62 142-219 8-69 (92)
292 1dl2_A Class I alpha-1,2-manno 94.8 1.5 5E-05 50.6 20.4 284 370-727 93-434 (511)
293 1ia6_A Cellulase CEL9M; cellul 94.6 0.6 2.1E-05 52.8 16.4 110 299-415 50-194 (441)
294 1nm3_A Protein HI0572; hybrid, 94.3 0.14 4.7E-06 52.4 9.6 18 137-154 32-50 (241)
295 1dl2_A Class I alpha-1,2-manno 94.3 0.7 2.4E-05 53.2 16.2 187 507-723 71-277 (511)
296 3gv1_A Disulfide interchange p 93.9 0.15 5.3E-06 48.8 8.4 28 133-160 9-36 (147)
297 3e6u_A LANC-like protein 1; al 93.9 1.9 6.6E-05 48.0 18.6 138 507-701 47-184 (411)
298 1nxc_A Mannosyl-oligosaccharid 93.9 0.086 2.9E-06 60.2 7.6 103 613-719 104-207 (478)
299 2v2g_A Peroxiredoxin 6; oxidor 93.9 0.14 4.9E-06 52.8 8.6 36 203-242 126-161 (233)
300 1un2_A DSBA, thiol-disulfide i 93.7 0.031 1.1E-06 56.3 3.1 47 138-184 113-159 (197)
301 2v8i_A Pectate lyase; periplas 93.7 0.14 5E-06 57.2 8.5 91 543-661 378-470 (543)
302 1hcu_A Alpha-1,2-mannosidase; 93.5 0.48 1.6E-05 54.5 12.9 174 539-725 101-284 (503)
303 1ks8_A Endo-B-1,4-glucanase; c 93.5 4.3 0.00015 45.7 20.5 110 299-415 48-191 (433)
304 1z6m_A Conserved hypothetical 93.1 0.26 8.7E-06 47.6 8.6 25 136-160 25-49 (175)
305 2wfc_A Peroxiredoxin 5, PRDX5; 93.0 0.086 2.9E-06 51.3 5.0 19 137-155 30-49 (167)
306 2ri9_A Mannosyl-oligosaccharid 92.9 7.4 0.00025 44.3 21.3 288 369-729 80-413 (475)
307 2wci_A Glutaredoxin-4; redox-a 92.8 0.16 5.6E-06 48.1 6.4 74 128-218 25-102 (135)
308 1tp9_A Peroxiredoxin, PRX D (t 92.6 0.094 3.2E-06 50.3 4.6 18 137-154 34-52 (162)
309 1prx_A HORF6; peroxiredoxin, h 92.4 0.62 2.1E-05 47.5 10.8 37 203-243 130-166 (224)
310 1xcc_A 1-Cys peroxiredoxin; un 92.2 0.18 6E-06 51.5 6.2 35 204-242 128-162 (220)
311 4dvc_A Thiol:disulfide interch 92.1 0.41 1.4E-05 46.0 8.5 22 137-158 20-41 (184)
312 2wem_A Glutaredoxin-related pr 91.8 0.3 1E-05 45.1 6.8 75 128-219 10-89 (118)
313 1w6k_A Lanosterol synthase; cy 91.8 8.6 0.0003 46.1 21.2 82 336-424 406-501 (732)
314 3zyw_A Glutaredoxin-3; metal b 91.7 0.66 2.2E-05 42.1 8.8 75 128-219 6-84 (111)
315 3ipz_A Monothiol glutaredoxin- 91.5 0.62 2.1E-05 42.0 8.4 75 128-219 8-86 (109)
316 3gx8_A Monothiol glutaredoxin- 91.4 0.4 1.4E-05 44.4 7.2 76 128-218 6-86 (121)
317 1wzz_A Probable endoglucanase; 91.2 2.6 8.8E-05 45.9 14.5 181 505-718 16-201 (334)
318 3uma_A Hypothetical peroxiredo 91.2 0.23 7.9E-06 49.3 5.7 19 137-155 55-74 (184)
319 1q98_A Thiol peroxidase, TPX; 91.0 0.11 3.8E-06 49.8 3.0 20 137-156 42-62 (165)
320 2g0d_A Nisin biosynthesis prot 90.7 3 0.0001 46.0 14.8 71 541-641 282-352 (409)
321 1aba_A Glutaredoxin; electron 90.2 0.58 2E-05 40.0 6.6 63 144-219 4-78 (87)
322 1ut9_A Cellulose 1,4-beta-cell 89.9 0.63 2.1E-05 54.8 8.8 85 540-642 290-380 (609)
323 3mng_A Peroxiredoxin-5, mitoch 89.7 0.39 1.3E-05 47.1 5.8 36 203-240 137-172 (173)
324 3sbc_A Peroxiredoxin TSA1; alp 89.4 0.57 2E-05 47.9 6.9 101 137-243 51-178 (216)
325 1clc_A Endoglucanase CELD; EC: 89.3 13 0.00043 44.0 19.2 160 539-715 198-378 (639)
326 1t1v_A SH3BGRL3, SH3 domain-bi 88.9 0.63 2.2E-05 40.4 6.0 63 144-217 6-71 (93)
327 3gzk_A Cellulase; fold from GH 88.6 7.3 0.00025 45.1 16.2 161 537-715 151-334 (537)
328 1nm3_A Protein HI0572; hybrid, 88.0 1.1 3.8E-05 45.6 8.0 76 127-219 155-232 (241)
329 3l9v_A Putative thiol-disulfid 87.4 0.19 6.7E-06 49.7 1.8 44 138-181 14-59 (189)
330 2pwj_A Mitochondrial peroxired 87.0 0.81 2.8E-05 44.4 6.0 19 137-155 42-61 (171)
331 2ct6_A SH3 domain-binding glut 86.7 1 3.4E-05 40.7 6.1 64 143-217 11-83 (111)
332 3tue_A Tryparedoxin peroxidase 86.4 1.1 3.8E-05 45.9 6.8 102 137-244 55-183 (219)
333 2wul_A Glutaredoxin related pr 86.3 0.97 3.3E-05 41.9 5.8 52 128-191 10-68 (118)
334 2sqc_A Squalene-hopene cyclase 86.0 16 0.00054 43.0 17.4 80 337-425 396-487 (631)
335 1ut9_A Cellulose 1,4-beta-cell 83.6 33 0.0011 40.2 18.5 80 334-415 226-329 (609)
336 3feu_A Putative lipoprotein; a 83.1 0.79 2.7E-05 45.2 3.8 40 138-182 22-61 (185)
337 3f4s_A Alpha-DSBA1, putative u 82.5 5.9 0.0002 40.3 10.3 29 137-167 38-66 (226)
338 2jad_A Yellow fluorescent prot 81.1 1.3 4.3E-05 48.8 4.8 76 128-218 251-330 (362)
339 2xfg_A Endoglucanase 1; hydrol 79.2 57 0.002 36.9 17.9 119 572-713 111-259 (466)
340 4f9z_D Endoplasmic reticulum r 77.4 7.2 0.00025 39.2 8.9 77 128-215 120-201 (227)
341 1g87_A Endocellulase 9G; endog 76.1 44 0.0015 39.2 16.2 117 573-713 91-237 (614)
342 3cih_A Putative alpha-rhamnosi 74.8 18 0.00063 43.2 12.9 111 536-660 382-508 (739)
343 1gxm_A Pectate lyase; mechanis 74.5 2.8 9.5E-05 45.5 5.0 47 382-430 76-122 (332)
344 2x8g_A Thioredoxin glutathione 72.5 6.3 0.00021 45.7 7.9 76 128-218 8-83 (598)
345 2yik_A Endoglucanase; hydrolas 72.5 36 0.0012 39.9 14.3 125 572-713 151-305 (611)
346 1wzz_A Probable endoglucanase; 72.1 8.5 0.00029 41.8 8.3 97 541-656 109-209 (334)
347 1v7w_A Chitobiose phosphorylas 70.8 1.1E+02 0.0038 36.6 18.5 26 573-598 529-554 (807)
348 2okx_A Rhamnosidase B; alpha b 67.9 25 0.00084 43.4 12.1 113 535-661 625-751 (956)
349 1v5d_A Chitosanase; chitosan d 67.4 27 0.00093 38.5 11.2 129 580-721 98-232 (386)
350 1r76_A Pectate lyase; A-helica 67.2 4.8 0.00016 44.8 5.0 42 382-424 151-195 (408)
351 2z07_A Putative uncharacterize 65.4 30 0.001 38.1 11.1 46 539-599 237-285 (420)
352 3c7m_A Thiol:disulfide interch 65.4 6.5 0.00022 37.9 5.1 43 137-181 16-60 (195)
353 1u6t_A SH3 domain-binding glut 64.7 9.7 0.00033 35.3 5.8 44 142-189 2-46 (121)
354 1w6k_A Lanosterol synthase; cy 62.6 50 0.0017 39.5 13.0 97 540-658 389-500 (732)
355 1wu4_A Xylanase Y; (alpla/alph 62.6 66 0.0023 35.6 13.1 130 498-652 18-171 (396)
356 3l9s_A Thiol:disulfide interch 62.3 4.2 0.00014 40.2 3.0 44 138-181 21-66 (191)
357 1v7w_A Chitobiose phosphorylas 61.6 38 0.0013 40.7 12.0 113 541-656 429-552 (807)
358 1v5d_A Chitosanase; chitosan d 60.4 11 0.00039 41.6 6.5 94 541-649 138-231 (386)
359 2z07_A Putative uncharacterize 60.4 26 0.00089 38.5 9.5 46 616-662 238-288 (420)
360 2jg0_A Periplasmic trehalase; 59.5 43 0.0015 38.6 11.3 94 537-652 305-402 (535)
361 3q6o_A Sulfhydryl oxidase 1; p 59.1 15 0.00051 37.0 6.7 68 135-219 154-221 (244)
362 3ren_A Glycosyl hydrolase, fam 58.0 12 0.00042 40.8 6.0 70 580-652 82-152 (350)
363 3qde_A Cellobiose phosphorylas 57.2 66 0.0022 39.0 12.9 116 529-653 412-559 (811)
364 2axo_A Hypothetical protein AT 56.8 20 0.00068 37.8 7.2 22 137-158 39-62 (270)
365 2h6f_B Protein farnesyltransfe 55.7 16 0.00056 41.0 6.7 118 286-427 76-195 (437)
366 3rrs_A Cellobiose phosphorylas 55.3 64 0.0022 39.2 12.3 116 529-653 419-566 (822)
367 1kwf_A Endoglucanase A; hydrol 52.6 1.4E+02 0.0048 32.5 13.5 124 580-719 82-214 (363)
368 3tdg_A DSBG, putative uncharac 50.7 7.9 0.00027 40.9 2.9 23 136-158 145-167 (273)
369 3ren_A Glycosyl hydrolase, fam 49.9 33 0.0011 37.4 7.8 87 541-649 117-203 (350)
370 1ulv_A Glucodextranase; GH fam 48.7 2E+02 0.0068 35.8 15.4 70 577-649 348-420 (1020)
371 4f82_A Thioredoxin reductase; 48.1 36 0.0012 33.4 7.1 18 138-155 47-65 (176)
372 2okx_A Rhamnosidase B; alpha b 47.5 3.3E+02 0.011 33.4 17.2 135 577-721 595-740 (956)
373 1ulv_A Glucodextranase; GH fam 46.6 4.1E+02 0.014 33.0 17.7 89 541-654 389-485 (1020)
374 1kwf_A Endoglucanase A; hydrol 44.2 41 0.0014 36.8 7.5 93 541-650 123-216 (363)
375 1sji_A Calsequestrin 2, calseq 43.5 31 0.0011 36.8 6.3 66 141-213 248-316 (350)
376 3qxf_A Endoglucanase; cellulas 43.1 29 0.00098 38.0 5.9 75 580-654 53-135 (355)
377 2vn4_A Glucoamylase; hydrolase 43.0 2.3E+02 0.0078 33.0 14.0 96 537-648 186-291 (599)
378 2p0v_A Hypothetical protein BT 42.6 1.9E+02 0.0066 32.8 12.7 113 612-724 178-319 (489)
379 4acq_A Alpha-2-macroglobulin; 42.2 1.8E+02 0.0062 37.6 14.1 243 335-699 979-1246(1451)
380 1z3e_A Regulatory protein SPX; 42.2 18 0.00061 33.4 3.7 16 142-157 3-18 (132)
381 1qqf_A Protein (complement C3D 42.0 2.6E+02 0.009 28.5 13.1 121 284-417 39-172 (277)
382 3rrs_A Cellobiose phosphorylas 41.9 1.7E+02 0.0059 35.4 13.2 59 577-637 382-445 (822)
383 1hzf_A Complement factor C4A; 41.5 1.2E+02 0.0042 32.7 10.8 115 284-416 92-227 (367)
384 3qde_A Cellobiose phosphorylas 39.5 2.1E+02 0.0073 34.5 13.4 59 577-637 375-438 (811)
385 1h12_A Endo-1,4-beta-xylanase; 39.2 74 0.0025 35.3 8.6 123 580-718 97-237 (405)
386 1s3c_A Arsenate reductase; ARS 38.9 12 0.0004 35.5 1.8 60 144-217 6-66 (141)
387 4fnv_A Heparinase III protein, 38.8 5.6E+02 0.019 30.3 17.9 92 539-654 261-360 (702)
388 3fz4_A Putative arsenate reduc 37.8 22 0.00074 32.5 3.4 59 143-215 6-65 (120)
389 1n4q_B Geranyltransferase type 37.2 83 0.0028 34.6 8.6 21 404-425 192-212 (377)
390 3l78_A Regulatory protein SPX; 37.2 24 0.00081 32.2 3.6 60 143-216 3-63 (120)
391 2wy7_A Complement C3D fragment 36.7 3.5E+02 0.012 28.1 13.3 120 284-416 55-187 (310)
392 3a0o_A Oligo alginate lyase; a 36.5 4.9E+02 0.017 30.8 16.0 27 383-409 209-235 (776)
393 1tf4_A T. fusca endo/EXO-cellu 35.4 5.3E+02 0.018 30.0 15.5 124 572-714 90-240 (605)
394 3gkx_A Putative ARSC family re 34.8 18 0.00063 33.0 2.4 59 143-215 7-66 (120)
395 1h12_A Endo-1,4-beta-xylanase; 33.7 48 0.0016 36.8 6.0 89 541-650 147-240 (405)
396 2jg0_A Periplasmic trehalase; 33.3 43 0.0015 38.5 5.7 50 613-662 305-361 (535)
397 1qqf_A Protein (complement C3D 33.2 45 0.0015 34.5 5.4 79 334-425 33-111 (277)
398 1r76_A Pectate lyase; A-helica 32.7 5.2E+02 0.018 28.6 14.0 72 540-629 151-228 (408)
399 2l4c_A Endoplasmic reticulum r 32.0 1.1E+02 0.0037 27.9 7.2 66 128-212 29-94 (124)
400 2p0v_A Hypothetical protein BT 31.9 2.4E+02 0.0083 32.0 11.3 152 541-716 183-378 (489)
401 3q7a_B Farnesyltransferase bet 31.5 2.4E+02 0.0081 32.3 11.3 22 403-425 215-236 (520)
402 3rdw_A Putative arsenate reduc 30.7 24 0.00082 32.3 2.4 61 143-217 8-70 (121)
403 1wu4_A Xylanase Y; (alpla/alph 29.8 64 0.0022 35.7 6.2 97 541-651 131-235 (396)
404 2p7v_B Sigma-70, RNA polymeras 29.4 37 0.0013 27.1 3.2 30 493-522 27-56 (68)
405 2wy7_A Complement C3D fragment 29.4 55 0.0019 34.4 5.4 79 334-425 49-127 (310)
406 3p2c_A Putative glycosyl hydro 29.2 3.9E+02 0.014 30.1 12.3 112 613-724 162-301 (463)
407 3us3_A Calsequestrin-1; calciu 28.8 1.5E+02 0.0051 31.8 8.9 82 112-212 118-200 (367)
408 1g9g_A Cellulase CEL48F; proce 28.1 4.8E+02 0.016 29.9 12.6 44 382-425 415-459 (629)
409 2o8x_A Probable RNA polymerase 28.0 48 0.0016 26.1 3.6 29 493-521 33-61 (70)
410 2fba_A Glucoamylase Glu1; (alp 27.8 1.6E+02 0.0054 33.5 9.1 117 528-658 141-272 (492)
411 3qxf_A Endoglucanase; cellulas 27.3 60 0.002 35.5 5.2 91 539-648 96-190 (355)
412 3hug_A RNA polymerase sigma fa 27.3 54 0.0018 27.9 4.0 29 493-521 55-83 (92)
413 4gl3_A Putative glucoamylase; 27.1 1.7E+02 0.0057 32.7 8.9 93 540-647 57-163 (424)
414 3e35_A Uncharacterized protein 25.8 2.1E+02 0.0071 30.8 9.1 168 108-303 103-279 (325)
415 2wam_A RV2714, conserved hypot 25.5 1.9E+02 0.0063 31.5 8.7 161 108-299 140-309 (351)
416 2sqc_A Squalene-hopene cyclase 25.4 1.2E+02 0.0041 35.4 7.8 95 540-658 314-417 (631)
417 3cih_A Putative alpha-rhamnosi 25.1 97 0.0033 36.9 7.0 56 539-606 456-514 (739)
418 3c68_A Uncharacterized protein 25.1 72 0.0025 38.3 5.9 46 616-661 555-607 (761)
419 3qt9_A Putative uncharacterize 25.1 4.5E+02 0.016 29.3 11.8 112 613-724 134-273 (427)
420 3bci_A Disulfide bond protein 23.8 37 0.0013 32.5 2.5 18 199-219 145-162 (186)
421 1g9g_A Cellulase CEL48F; proce 23.1 2.6E+02 0.0088 32.1 9.2 102 537-654 409-536 (629)
422 1hzf_A Complement factor C4A; 22.8 2.1E+02 0.0072 30.8 8.6 77 335-425 87-163 (367)
423 3gha_A Disulfide bond formatio 22.6 62 0.0021 31.8 4.0 18 199-219 159-176 (202)
424 2jpc_A SSRB; DNA binding prote 22.3 86 0.0029 24.0 4.0 29 493-521 15-43 (61)
425 3gha_A Disulfide bond formatio 21.8 86 0.0029 30.8 4.8 31 137-169 28-58 (202)
426 1ku3_A Sigma factor SIGA; heli 21.7 80 0.0027 25.5 3.9 28 493-520 32-59 (73)
427 3bci_A Disulfide bond protein 21.7 44 0.0015 31.9 2.6 24 136-159 9-32 (186)
428 3kzq_A Putative uncharacterize 21.5 81 0.0028 30.7 4.6 37 199-242 165-202 (208)
429 3gmf_A Protein-disulfide isome 21.4 72 0.0024 31.6 4.2 45 187-243 153-197 (205)
430 1gxm_A Pectate lyase; mechanis 21.3 4E+02 0.014 28.7 10.1 70 541-628 77-149 (332)
431 3t58_A Sulfhydryl oxidase 1; o 21.3 78 0.0027 36.2 4.9 66 135-218 154-220 (519)
432 3qry_B Putative uncharacterize 20.8 6.5E+02 0.022 28.0 11.9 111 613-724 133-273 (426)
433 1tty_A Sigma-A, RNA polymerase 20.5 72 0.0024 26.9 3.4 29 493-521 40-68 (87)
434 3feu_A Putative lipoprotein; a 20.4 68 0.0023 31.0 3.7 34 199-241 148-182 (185)
No 1
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=100.00 E-value=2.2e-45 Score=368.17 Aligned_cols=168 Identities=52% Similarity=1.035 Sum_probs=163.4
Q ss_pred cccccccCCChhhhcccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc
Q 003187 101 HTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (840)
Q Consensus 101 ~~NrL~~e~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD 180 (840)
++|||++|+|||||||++|||+|++|+++++++|+++||||||+|+|+||+|||+|+.++|++++|++.+|++||+||||
T Consensus 2 ~~n~l~~~~spyl~~ha~~~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD 81 (173)
T 3ira_A 2 EPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVD 81 (173)
T ss_dssp CCCGGGGCCCHHHHTTTTSSSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEE
T ss_pred CCcccccCCCHHHHhccCCCCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHHH
Q 003187 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAI 260 (840)
Q Consensus 181 ~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~~ 260 (840)
++++|++++.||.++|.++|++|||++||++|+|++++++||+|+++.+++++|+++|++|.+.|+++|++|++.|.+|.
T Consensus 82 ~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~~~~~~~~~~~~~~~~ 161 (173)
T 3ira_A 82 REERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKIT 161 (173)
T ss_dssp TTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHHHHSHHHHHHHHHHTC
T ss_pred CcccCcHHHHHHHHHHHHcCCCCCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 003187 261 EQLSEALS 268 (840)
Q Consensus 261 ~~l~~~~~ 268 (840)
++|++...
T Consensus 162 ~~~~~~~~ 169 (173)
T 3ira_A 162 STIQEMIK 169 (173)
T ss_dssp SHHHHHHH
T ss_pred HHHHHhhc
Confidence 99987643
No 2
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=100.00 E-value=7.5e-35 Score=327.07 Aligned_cols=335 Identities=10% Similarity=-0.027 Sum_probs=253.3
Q ss_pred HHHHHHHHH-hcccCCCCCCCC------CCCCCChhHHHH----HHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCC
Q 003187 285 LRLCAEQLS-KSYDSRFGGFGS------APKFPRPVEIQM----MLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI 353 (840)
Q Consensus 285 ~~~~~~~l~-~~~D~~~GGfg~------aPKFP~~~~l~~----Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi 353 (840)
++.++..|. ..+|+++|||++ .|| |.+..+.+ ++.+....... ...+++..+++|.+|++.|.+++
T Consensus 19 ~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~~-~~~k~l~~nar~l~~~a~a~~~~-~~~~~~~~l~~A~~~~~fl~~~~- 95 (402)
T 1fp3_A 19 LDRVMAFWLEHSHDREHGGFFTCLGRDGRVY-DDLKYVWLQGRQVWMYCRLYRKL-ERFHRPELLDAAKAGGEFLLRHA- 95 (402)
T ss_dssp HHHHHHHHHHHSBCTTTSSBCCCBCTTSCBS-CCCEEHHHHHHHHHHHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhccCCCCCCCCEeeEECCCCCCC-CCccchhhhHHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHHHHHhc-
Confidence 467888998 799999999966 788 76644433 55554222110 00135799999999999999966
Q ss_pred cccCCC-eEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCceEeeccCCc
Q 003187 354 HDHVGG-GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADS 431 (840)
Q Consensus 354 ~D~v~G-GF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~-~~~Ggfysa~DADs 431 (840)
+|+.|| ||| |++|++|.+||++|||||||+++.+|+++|++|+++.|++.|+++++++++.+. +++| +|++.|+|.
T Consensus 96 ~d~~gg~g~~-~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G-~f~~~~~~~ 173 (402)
T 1fp3_A 96 RVAPPEKKCA-FVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSG-LGRPQLPGA 173 (402)
T ss_dssp BSSTTSCCBC-SEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGG-GCCCCCTTS
T ss_pred cCcCCCCceE-EEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCc-ccCccccCc
Confidence 999988 999 899999999999999999999999999999999999999999999999999998 6655 567766654
Q ss_pred ccccccccccccchhHHHhhhhhHHHHHH---HhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHH
Q 003187 432 AETEGATRKKEGAFYVEDILGEHAILFKE---HYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKY 508 (840)
Q Consensus 432 ~~~~~~~~~~EGayY~~~vLg~~~~~~~~---~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l 508 (840)
.+. +|. - ..-...+.+.+ .+.++++ + -.+.+
T Consensus 174 ~~~-------~~~-~---~~m~~~~~~l~l~~l~~~~~~----------------------------------~-~~~~a 207 (402)
T 1fp3_A 174 VAS-------ESM-A---VPMMLLCLVEQLGEEDEELAG----------------------------------R-YAQLG 207 (402)
T ss_dssp CCE-------EET-H---HHHHHHHHHHHHHTTCHHHHH----------------------------------H-THHHH
T ss_pred cCC-------CCc-c---hHHHHHHHHHHHHHHHHhcCc----------------------------------H-HHHHH
Confidence 211 110 0 00001111222 2222110 0 13456
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcchhhhcH----HH-----------HHHHHHHHHHHHhhhhhhhhcccCCCCCCChH
Q 003187 509 LNILGECRRKLFDVRSKRPRPHLDDKVIVSW----NG-----------LVISSFARASKILKSEAESAMFNFPVVGSDRK 573 (840)
Q Consensus 509 ~~~l~~~r~kL~~~R~~R~~P~~DdKiltsW----Na-----------l~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~ 573 (840)
++.++.++++ ++.|.+|..+++|. +| |. ...|.|+++++++++ +
T Consensus 208 ~~~~~~~~~~-~~~~~~~~~e~~d~----dw~~~~~~~g~~~~pgh~ie~~wlL~~a~~~~~~----------------~ 266 (402)
T 1fp3_A 208 HWCARRILQH-VQRDGQAVLENVSE----DGEELSGCLGRHQNPGHALEAGWFLLRHSSRSGD----------------A 266 (402)
T ss_dssp HHHHHHHHTT-EETTTTEECSEEET----TSCBCCHHHHHEECHHHHHHHHHHHHHHHHHTTC----------------H
T ss_pred HHHHHHHHHH-hCcCCCeEEEEECC----CCCccCCCCCCCCCCCcHHHHHHHHHHHHHHcCC----------------h
Confidence 7778888888 88899999999885 35 21 145589999999987 8
Q ss_pred HHHHHHHHHHHHH-HHhccccCCCeEEEe-ecCCCCC-----CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003187 574 EYMEVAESAASFI-RRHLYDEQTHRLQHS-FRNGPSK-----APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 646 (840)
Q Consensus 574 ~yle~A~~~~~fl-~~~l~d~~~G~l~~~-~~~g~~~-----~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~ 646 (840)
+|++.|+++++++ .+++|+++.|+++++ ..+|.+. ....++.++.+|.|++.||++|||++||++|+++++.+
T Consensus 267 ~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~~l~d~~~~~W~qaea~~a~l~ly~~tgd~~yl~~a~~~~~~~ 346 (402)
T 1fp3_A 267 KLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYT 346 (402)
T ss_dssp HHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999 999999775777766 6677753 33455666789999999999999999999999999999
Q ss_pred HHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 003187 647 DELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 692 (840)
Q Consensus 647 ~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~Ll 692 (840)
.++|+|+++|+||++...+..+....|. .-+.+|-+|..++..++
T Consensus 347 ~~~f~D~~~G~w~~~~~~~g~~~~~~k~-~~~k~~yH~~r~~~~~~ 391 (402)
T 1fp3_A 347 FRQFRDPEYGEWFGYLNREGKVALTIKG-GPFKGCFHVPRCLAMCE 391 (402)
T ss_dssp HHHTBCTTTSSBCCEECTTSCEEECCSS-CSSCCSSHHHHHHHHHH
T ss_pred HHhCcCCCCCceEeeECCCcCCCCCCCC-CCCCCCCccHHHHHHHH
Confidence 9999999999999987766665544333 35678999998776554
No 3
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=100.00 E-value=3.3e-34 Score=319.70 Aligned_cols=253 Identities=12% Similarity=0.039 Sum_probs=201.2
Q ss_pred HHHHHHHHhCCCcccCCCeE-EEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHhccCC
Q 003187 342 LFTLQCMAKGGIHDHVGGGF-HRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL-TKDVFYSYICRDILDYLRRDMIGP 419 (840)
Q Consensus 342 ~~TL~~Ma~GGi~D~v~GGF-~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~-tgd~~y~~~A~~t~~fl~r~m~~~ 419 (840)
...|..- ...++|| +||| +||++|.. .+|| ||||||||+++++|++||++ ++++.|+++|+++++||+++|+++
T Consensus 18 ~~~l~fw-~~~~~D~-~GGf~~~~~~d~~-~~~~-eK~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~ 93 (388)
T 2gz6_A 18 NDVLPFW-ENHSLDS-EGGYFTCLDRQGK-VYDT-DKFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDD 93 (388)
T ss_dssp HTHHHHH-HHHCBCT-TSSBCCEEBTTSC-EEEC-CEEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCT
T ss_pred HhHHHHH-HhcCCCC-CCCEEeEECCCCC-cCCc-chhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3344433 3368999 9995 79999998 8888 99999999999999999999 899999999999999999999999
Q ss_pred CCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHH
Q 003187 420 GGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASAS 499 (840)
Q Consensus 420 ~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~ 499 (840)
+||||+++|+|+.+
T Consensus 94 ~Gg~~~~~d~dg~~------------------------------------------------------------------ 107 (388)
T 2gz6_A 94 EGNWYFALTRGGEP------------------------------------------------------------------ 107 (388)
T ss_dssp TSCBCSEECTTSCB------------------------------------------------------------------
T ss_pred CCCEEEEEcCCCCc------------------------------------------------------------------
Confidence 99999999988731
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHH
Q 003187 500 KLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVA 579 (840)
Q Consensus 500 ~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A 579 (840)
+|++..+.+||++|.||+++|+++++ ++|++.|
T Consensus 108 -------------------------------~~~~~~~~~~af~i~al~~~y~~tg~----------------~~~l~~A 140 (388)
T 2gz6_A 108 -------------------------------LVQPYNIFSDCFAAMAFSQYALASGE----------------EWAKDVA 140 (388)
T ss_dssp -------------------------------CCCCCCHHHHHHHHHHHHHHHHHHCC----------------HHHHHHH
T ss_pred -------------------------------ccCCcchHHHHHHHHHHHHHHHHhCC----------------HHHHHHH
Confidence 01122345799999999999999998 8999999
Q ss_pred HHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccc
Q 003187 580 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 659 (840)
Q Consensus 580 ~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf 659 (840)
++++++|.++++++ .|.+.+.+.++.+ ..+ ++++++++.++++||++|+|++|++.|+++++.+.++|+|+++|++.
T Consensus 141 ~~~~~~i~~~~~d~-~g~~~~~~~~~~~-~~~-~~~~~~~~~all~l~~~t~d~~~~~~A~~~~~~~~~~~~~~~~g~~~ 217 (388)
T 2gz6_A 141 MQAYNNVLRRKDNP-KGKYTKTYPGTRP-MKA-LAVPMILANLTLEMEWLLPQETLENVLAATVQEVMGDFLDQEQGLMY 217 (388)
T ss_dssp HHHHHHHHTC---------------CCC-CEE-THHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHTTEETTTTEEC
T ss_pred HHHHHHHHHHhcCC-CcccCcccCCCCC-CCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 99999999999875 3544444544432 333 89999999999999999999999999999999999999998888752
Q ss_pred cCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003187 660 NTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 719 (840)
Q Consensus 660 ~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~ 719 (840)
.....+...+ .++..|...|++|+.++++|++++.+||+ +.|++.|++++..+..
T Consensus 218 e~~~~~w~~~--~~~~~~~~~pgh~~e~a~lL~~~~~~tgd---~~~~~~A~~~~~~~~~ 272 (388)
T 2gz6_A 218 ENVAPDGSHI--DCFEGRLINPGHGIEAMWFIMDIARRKND---SKTINQAVDVVLNILN 272 (388)
T ss_dssp SEECTTSCCC--CSTTTTEECHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCC--CCcccCcCCCCHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Confidence 2111122222 34456789999999999999999999985 7899999999988753
No 4
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=100.00 E-value=2.5e-32 Score=309.32 Aligned_cols=305 Identities=13% Similarity=0.035 Sum_probs=247.0
Q ss_pred HHHHHHHHHhcccCCCCCCCC-------CCCCCChhHHH-HHHH-hhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcc
Q 003187 285 LRLCAEQLSKSYDSRFGGFGS-------APKFPRPVEIQ-MMLY-HSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHD 355 (840)
Q Consensus 285 ~~~~~~~l~~~~D~~~GGfg~-------aPKFP~~~~l~-~Ll~-~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D 355 (840)
+..++..+...+|++ ||+. -|.++....++ .++. +..... .+++..+++|.+|++.|.++ ++|
T Consensus 17 ~~~ll~f~~~~~d~~--GF~~ld~~g~~~~~~~k~~~~nar~i~~~a~a~~-----~g~~~~l~~A~~~~~fl~~~-~~D 88 (421)
T 2zbl_A 17 TDRIFNFGKNAVVPT--GFGWLGNKGQIKEEMGTHLWITARMLHVYSVAAS-----MGRPGAYDLVDHGIKAMNGA-LRD 88 (421)
T ss_dssp HHHHHHHHGGGEETT--EECCBCTTSCBCGGGCEEHHHHHHHHHHHHHHHH-----TTCTTHHHHHHHHHHHHTTT-TBC
T ss_pred HHHHHHHHHhCcCCC--CcceECCCCCCCCCchhhHHHHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHHHHh-ccC
Confidence 345566778889998 6853 35555554443 2222 222111 23578999999999999997 999
Q ss_pred cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-CCceEeeccCCcccc
Q 003187 356 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-GGEIFSAEDADSAET 434 (840)
Q Consensus 356 ~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~-~Ggfysa~DADs~~~ 434 (840)
+++|||| ||+|++|.+|| ||||||||+++.+|++ |++|+++.|++.|+++++++.++|+++ +||||++.|+|+.+
T Consensus 89 ~~~GG~~-~s~d~dg~~~~-~k~lyd~Af~i~al~~-~~~tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~d~d~~~- 164 (421)
T 2zbl_A 89 KKYGGWY-ACVNDQGVVDA-SKQGYQHFFALLGAAS-AVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQ- 164 (421)
T ss_dssp TTTSSBC-SEEETTEEEEC-CEEHHHHHHHHHHHHH-HHTTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTSCS-
T ss_pred cCCCeEE-EEeCCCCCcCC-chhHHHHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHHHhccCCCCCeeeeecCCCCc-
Confidence 9999999 89999999999 9999999999999999 999999999999999999999999998 79999999998831
Q ss_pred cccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHH
Q 003187 435 EGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGE 514 (840)
Q Consensus 435 ~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~ 514 (840)
.+ +
T Consensus 165 ------~~-----------------------------------------~------------------------------ 167 (421)
T 2zbl_A 165 ------TE-----------------------------------------D------------------------------ 167 (421)
T ss_dssp ------BC-----------------------------------------S------------------------------
T ss_pred ------cc-----------------------------------------c------------------------------
Confidence 00 0
Q ss_pred HHHHHHhhhcCCCCCCCcchhhhcHHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 003187 515 CRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD 592 (840)
Q Consensus 515 ~r~kL~~~R~~R~~P~~DdKiltsWNal~--I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d 592 (840)
...||+.| +.+|+++++++++ ++|++.|+++++++..++.+
T Consensus 168 ---------------------~~~~n~~m~~~~al~~l~~~tgd----------------~~~~~~A~~~~~~~~~~~~~ 210 (421)
T 2zbl_A 168 ---------------------YRGGNANMHAVEAFLIVYDVTHD----------------KKWLDRALRIASVIIHDVAR 210 (421)
T ss_dssp ---------------------CEEHHHHHHHHHHHHHHHHTTCC----------------THHHHHHHHHHHHHCCCCCG
T ss_pred ---------------------cCCCcHHHHHHHHHHHHHHhhCC----------------HHHHHHHHHHHHHHHHHhcc
Confidence 02488866 9999999999998 78999999999999999988
Q ss_pred cCCCeEEEeecCCCCCCCCC-cch-----------HHHH---HHHHHHHHHHc---CC--H-HHHHHHHHHHHHHHHHcc
Q 003187 593 EQTHRLQHSFRNGPSKAPGF-LDD-----------YAFL---ISGLLDLYEFG---SG--T-KWLVWAIELQNTQDELFL 651 (840)
Q Consensus 593 ~~~G~l~~~~~~g~~~~~~~-leD-----------yA~~---i~aLl~LYeaT---gd--~-~yL~~A~~L~~~~~~~F~ 651 (840)
+.+|++.+.++++.....++ ++| |++. ++.|+++|+++ ++ + .|++.|+++++.+.+++|
T Consensus 211 ~~~~~l~~~f~~~~~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g~ 290 (421)
T 2zbl_A 211 NGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAW 290 (421)
T ss_dssp GGTTCCCCEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHB
T ss_pred CCCCchhhhcCCccccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHHhc
Confidence 66678877777664434343 555 8887 77899999999 56 5 899999999999999999
Q ss_pred ccc-CCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003187 652 DRE-GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDM 724 (840)
Q Consensus 652 D~~-~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~ 724 (840)
|++ .||+|.+...++.++.|.|.. ..|+.++.+|++|+++||+ +.|.+.++++++.+...+...
T Consensus 291 d~~~~GG~~~~~~~~g~~~~~~k~~------w~~aea~~all~l~~~tgd---~~yl~~a~~~~~~~~~~~~d~ 355 (421)
T 2zbl_A 291 APDGADGFVYSVDWDGKPIVRERVR------WPIVEAMGTAYALYTLTDD---SQYEEWYQKWWDYCIKYLMDY 355 (421)
T ss_dssp SCSSSSSBCSCBCTTSCBSCCCEEH------HHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHTBCT
T ss_pred CCCCCCcEEEeecCCCCccCCCccc------HHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhCCCC
Confidence 988 577777665556666665554 5599999999999999996 789999999999998877654
No 5
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=99.93 E-value=2.6e-25 Score=250.27 Aligned_cols=259 Identities=15% Similarity=0.100 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHhCCCcccCCCeEEEEecCCCCC-CCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc
Q 003187 339 KMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWH-VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI 417 (840)
Q Consensus 339 ~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~-vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~ 417 (840)
..+...|..-...+ .| .+||||.+ +|.+|. +||+||||++||++|++|+.||++++++.|+++|+++++||.++|+
T Consensus 13 ~~~~~~l~fw~~~~-~D-~~GGf~~~-l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~ 89 (402)
T 3gt5_A 13 THISDTMAFYHPRC-ID-SAGGFFHY-FRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHR 89 (402)
T ss_dssp HHHHHHHHHHTTTT-BC-TTSSBCCE-ECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHhcC-CC-CCcCeeeE-ECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCc
Confidence 33455566544434 57 58999963 355555 6999999999999999999999999999999999999999999999
Q ss_pred CCC-CceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchH
Q 003187 418 GPG-GEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSA 496 (840)
Q Consensus 418 ~~~-Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~ 496 (840)
+++ ||||++. .|..+.
T Consensus 90 d~~~Gg~~~~~-~dG~~~-------------------------------------------------------------- 106 (402)
T 3gt5_A 90 NPATGGYAWTL-CDDRVE-------------------------------------------------------------- 106 (402)
T ss_dssp CTTTSCBCSEE-ETTEEE--------------------------------------------------------------
T ss_pred cCCCCcEEEEe-eCCCCC--------------------------------------------------------------
Confidence 988 9999987 544210
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHH
Q 003187 497 SASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYM 576 (840)
Q Consensus 497 ~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yl 576 (840)
|....+..+|++|.||+. +.++++ ++|+
T Consensus 107 -----------------------------------~~~~~lyd~Af~i~al~~-~~~tgd----------------~~~l 134 (402)
T 3gt5_A 107 -----------------------------------DDTNHCYGLAFVMLAYSC-GLKVGI----------------KQAR 134 (402)
T ss_dssp -----------------------------------ECCEEHHHHHHHHHHHHH-HHHTTC----------------TTHH
T ss_pred -----------------------------------cCCcchHHHHHHHHHHHH-HHHhCC----------------hhHH
Confidence 011122346999999999 666887 7899
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeecCC-CCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccC
Q 003187 577 EVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 655 (840)
Q Consensus 577 e~A~~~~~fl~~~l~d~~~G~l~~~~~~g-~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~ 655 (840)
+.|+++++.|.++++|++.|+++.++..+ ........++++++++++++||++|+|++|+++|+++++.+.++|+|+++
T Consensus 135 ~~A~~l~~~i~~~f~d~~~G~~~~~~~~~~~~~~~~~~n~~m~l~eall~L~~~tgd~~~~~~a~~l~~~~~~~f~~~~~ 214 (402)
T 3gt5_A 135 EWMDETWCLLERHFWDAEYGLYKDEADAQWNFTRYRGQNANMHMCEAMLAAYEASGEQRYLERALVLADRITRRQAAKAD 214 (402)
T ss_dssp HHHHHHHHHHHHHTEETTTTEECCEECTTCCBCSCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCCcCCCchhhhCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhCccC
Confidence 99999999999999998777665344322 21122467889999999999999999999999999999999999999987
Q ss_pred Cc---cccCCCCC-Ccc-ccccccC--CCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 003187 656 GG---YFNTTGED-PSV-LLRVKED--HDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFE 718 (840)
Q Consensus 656 Gg---yf~t~~~~-~~l-~~R~k~~--~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~ 718 (840)
|. +|+..+.. ... ..+++.. -++..|+++..+++.|++++.++++ +.|.+.|.++.....
T Consensus 215 g~l~e~~~~dw~~~~~~~~~~~~~~~~~~~~~pGH~iE~awlLl~~~~~~~~---~~~~~~A~~l~~~~~ 281 (402)
T 3gt5_A 215 GLVWEHYDMRWEVDWDYNRDNPKHLFRPWGFQPGHQTEWAKLLLILDRYIEV---EWLVPVARSLFDVAV 281 (402)
T ss_dssp TSCCSEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHCCC---TTHHHHHHHHHHHHH
T ss_pred CeeEEEECCCCCCccccccCCcccccCcCCCCCChHHHHHHHHHHHHHhhCc---HHHHHHHHHHHHHHH
Confidence 76 55433311 000 0111111 1568899999999999999999985 679999998876653
No 6
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.89 E-value=2.9e-23 Score=203.91 Aligned_cols=124 Identities=18% Similarity=0.281 Sum_probs=101.2
Q ss_pred ccccccccC-CChhhhcccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEE
Q 003187 100 KHTNRLAAE-HSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK 178 (840)
Q Consensus 100 ~~~NrL~~e-~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vk 178 (840)
..+|||+.. ++||.+++. ..+++|+++||+++|||||+|+++||+||++|+++||+||+|+++||++||.|+
T Consensus 10 ~~~~~l~~lf~~p~~~~~~-------~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~ 82 (153)
T 2dlx_A 10 KKLTTLADLFRPPIDLMHK-------GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQ 82 (153)
T ss_dssp CCCCCCCCTTSCCTTTSCC-------SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEE
T ss_pred chhhHHHHhhCCchhhhcc-------cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEE
Confidence 467999999 999988754 345999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC-CceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 179 VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD-LKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 179 vD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~-g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
||+++ ++ ...+++. +++.|+|+++|++|+ |+++...+++++ ..|++.|+++.
T Consensus 83 ~d~~~-~~-~~~l~~~----y~v~~~P~~~fld~~~G~~l~~~~g~~~------~~fl~~L~~~l 135 (153)
T 2dlx_A 83 VYHDS-EE-GQRYIQF----YKLGDFPYVSILDPRTGQKLVEWHQLDV------SSFLDQVTGFL 135 (153)
T ss_dssp EESSS-HH-HHHHHHH----HTCCSSSEEEEECTTTCCCCEEESSCCH------HHHHHHHHHHH
T ss_pred EecCC-Hh-HHHHHHH----cCCCCCCEEEEEeCCCCcEeeecCCCCH------HHHHHHHHHHH
Confidence 99964 33 2333322 378899999999998 877765333443 36777666554
No 7
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=99.89 E-value=5.2e-22 Score=222.73 Aligned_cols=314 Identities=12% Similarity=0.026 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHhCCCcccCCCeEEE-EecCCCCCCCCCcchHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHH
Q 003187 339 KMVLFTLQCMAKGGIHDHVGGGFHR-YSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT---KDVFYSYICRDILDYLRR 414 (840)
Q Consensus 339 ~~a~~TL~~Ma~GGi~D~v~GGF~R-YsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~t---gd~~y~~~A~~t~~fl~r 414 (840)
+.....|..... +++|+++|||++ |++| ...+| ++|||++||++|++|+.||+++ +++.|+++|+++++||.+
T Consensus 17 ~~~~~~l~~w~~-~~~D~~~GGf~~~~~~d-g~~~~-~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~ 93 (402)
T 1fp3_A 17 QELDRVMAFWLE-HSHDREHGGFFTCLGRD-GRVYD-DLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLR 93 (402)
T ss_dssp HHHHHHHHHHHH-HSBCTTTSSBCCCBCTT-SCBSC-CCEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc-cCCCCCCCCEeeEECCC-CCCCC-CccchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 334556665553 699999999976 3433 33455 8999999999999999999997 999999999999999999
Q ss_pred hccCCCC--ceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccC
Q 003187 415 DMIGPGG--EIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELN 492 (840)
Q Consensus 415 ~m~~~~G--gfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~ 492 (840)
.|++++| |||++.|+|+.+.+..+.....+|++.. +.++|.++ |+
T Consensus 94 ~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a--------~~~~~~at--gd----------------------- 140 (402)
T 1fp3_A 94 HARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMA--------MNELWRVT--AE----------------------- 140 (402)
T ss_dssp HTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHH--------HHHHHHHH--CC-----------------------
T ss_pred hccCcCCCCceEEEECCCCCccccccchHHHHHHHHH--------HHHHHHHh--CC-----------------------
Confidence 9999874 8999999999765544455557777611 11111111 00
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCC-CcchhhhcHHHH--HHHHHHH---HHHHhhhhhhhhcccCC
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPH-LDDKVIVSWNGL--VISSFAR---ASKILKSEAESAMFNFP 566 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~-~DdKiltsWNal--~I~ALa~---A~~~~~d~~~~~~~~~~ 566 (840)
++. .+...+.++.+.+.+.+....--.+. -|...+.++|+. ++.+++. ++.++++
T Consensus 141 --~~~-------~~~A~~l~~~~~~~~~d~~~G~f~~~~~~~~~~~~~~~~m~~~~~~l~l~~l~~~~~~---------- 201 (402)
T 1fp3_A 141 --ARY-------QSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAG---------- 201 (402)
T ss_dssp --HHH-------HHHHHHHHHHHHHHHHTCGGGGCCCCCTTSCCEEETHHHHHHHHHHHHHHTTCHHHHH----------
T ss_pred --HHH-------HHHHHHHHHHHHHHhccCCCcccCccccCccCCCCcchHHHHHHHHHHHHHHHHhcCc----------
Confidence 000 01112222222222220000000000 011123344664 4456666 5566643
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-cCCCCCC--CCCcchHHHHHH---HHHHHHHHcCCHHHHHHHH
Q 003187 567 VVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKA--PGFLDDYAFLIS---GLLDLYEFGSGTKWLVWAI 640 (840)
Q Consensus 567 ~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~-~~g~~~~--~~~leDyA~~i~---aLl~LYeaTgd~~yL~~A~ 640 (840)
.|++.|.++++.+.++ .++++|++...+ .++.+.. .+..-.+++.|+ .|++++++++++.|++.|+
T Consensus 202 -------~~~~~a~~~~~~~~~~-~~~~~~~~~e~~d~dw~~~~~~~g~~~~pgh~ie~~wlL~~a~~~~~~~~~l~~A~ 273 (402)
T 1fp3_A 202 -------RYAQLGHWCARRILQH-VQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVI 273 (402)
T ss_dssp -------HTHHHHHHHHHHHHTT-EETTTTEECSEEETTSCBCCHHHHHEECHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHH-hCcCCCeEEEEECCCCCccCCCCCCCCCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4899999999999999 887777765443 2332211 122245566555 7999999999999999999
Q ss_pred HHHHHH-HHHcccccCCccccCCCCCCccccccccCCC-CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 003187 641 ELQNTQ-DELFLDREGGGYFNTTGEDPSVLLRVKEDHD-GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFE 718 (840)
Q Consensus 641 ~L~~~~-~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D-~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~ 718 (840)
++++.+ .++.||++.|+++.+...++.++. ...| ...-.+++.++.+++.|+++||+ +.|.+.|+++.+.+.
T Consensus 274 ~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~---~l~d~~~~~W~qaea~~a~l~ly~~tgd---~~yl~~a~~~~~~~~ 347 (402)
T 1fp3_A 274 DTFLLLPFRSGWDADHGGLFYFQDADGLCPT---QLEWAMKLWWPHSEAMIAFLMGYSESGD---PALLRLFYQVAEYTF 347 (402)
T ss_dssp HHHTHHHHHHHBCTTTCSBCSCEETTSCCCS---STTTTCEEHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCEEEeecCCCCccc---cCcCCCcCcHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 999999 999999875665544222222211 1112 22236788899999999999996 789999999888876
Q ss_pred HHH
Q 003187 719 TRL 721 (840)
Q Consensus 719 ~~i 721 (840)
..+
T Consensus 348 ~~f 350 (402)
T 1fp3_A 348 RQF 350 (402)
T ss_dssp HHT
T ss_pred HhC
Confidence 655
No 8
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=99.89 E-value=1.7e-22 Score=227.46 Aligned_cols=340 Identities=13% Similarity=0.033 Sum_probs=238.3
Q ss_pred HHHHHHHHH-hcccCCCCCCCC--------CCCCCChhHH--HHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCC
Q 003187 285 LRLCAEQLS-KSYDSRFGGFGS--------APKFPRPVEI--QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI 353 (840)
Q Consensus 285 ~~~~~~~l~-~~~D~~~GGfg~--------aPKFP~~~~l--~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi 353 (840)
++.++..|. ...| ++|||.+ -|.++....+ +++.-+..... ..+++..+++|.++++.|.+ .+
T Consensus 15 ~~~~l~fw~~~~~D-~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~----~~g~~~~l~~A~~~~~fl~~-~~ 88 (402)
T 3gt5_A 15 ISDTMAFYHPRCID-SAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYL----QFGTAEYLDAVHHGLSYVRD-VH 88 (402)
T ss_dssp HHHHHHHHTTTTBC-TTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhcCCC-CCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHH----hhCChHHHHHHHHHHHHHHH-hC
Confidence 467888885 5789 6999964 2455554433 23322222211 12358999999999999987 68
Q ss_pred cccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceEeeccCCcc
Q 003187 354 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSA 432 (840)
Q Consensus 354 ~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~-Ggfysa~DADs~ 432 (840)
+|..+|||+ +++ +++.+...+|++||+|.+|.++++ |..|+++.|++.|++++++|.+.+++++ |||+.+.++|..
T Consensus 89 ~d~~~Gg~~-~~~-~dG~~~~~~~~lyd~Af~i~al~~-~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~~~ 165 (402)
T 3gt5_A 89 RNPATGGYA-WTL-CDDRVEDDTNHCYGLAFVMLAYSC-GLKVGIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQWN 165 (402)
T ss_dssp BCTTTSCBC-SEE-ETTEEEECCEEHHHHHHHHHHHHH-HHHTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTCC
T ss_pred ccCCCCcEE-EEe-eCCCCCcCCcchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCCCC
Confidence 898779998 477 777776789999999999999999 6679999999999999999999999987 555546666532
Q ss_pred cccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHH
Q 003187 433 ETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNIL 512 (840)
Q Consensus 433 ~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l 512 (840)
... ..+ .....+ -.+.+.+.|.++.+. .+ .+.+++++
T Consensus 166 -~~~----~~~-~n~~m~---l~eall~L~~~tgd~---------------------------~~-------~~~a~~l~ 202 (402)
T 3gt5_A 166 -FTR----YRG-QNANMH---MCEAMLAAYEASGEQ---------------------------RY-------LERALVLA 202 (402)
T ss_dssp -BCS----CEE-HHHHHH---HHHHHHHHHHHHCCH---------------------------HH-------HHHHHHHH
T ss_pred -CCC----CCC-CCHHHH---HHHHHHHHHHhhCCH---------------------------HH-------HHHHHHHH
Confidence 100 000 000000 011122233332110 01 14555677
Q ss_pred HHHHHHHHhhhcCCCCCCCcc--hh------------------hhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCh
Q 003187 513 GECRRKLFDVRSKRPRPHLDD--KV------------------IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDR 572 (840)
Q Consensus 513 ~~~r~kL~~~R~~R~~P~~Dd--Ki------------------ltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~ 572 (840)
+.+.+++.+....+..-++|. +. --+-+.-..|.|.++++++++
T Consensus 203 ~~~~~~f~~~~~g~l~e~~~~dw~~~~~~~~~~~~~~~~~~~~~pGH~iE~awlLl~~~~~~~~---------------- 266 (402)
T 3gt5_A 203 DRITRRQAAKADGLVWEHYDMRWEVDWDYNRDNPKHLFRPWGFQPGHQTEWAKLLLILDRYIEV---------------- 266 (402)
T ss_dssp HHHHTHHHHTTTTSCCSEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHCCC----------------
T ss_pred HHHHHHhhCccCCeeEEEECCCCCCccccccCCcccccCcCCCCCChHHHHHHHHHHHHHhhCc----------------
Confidence 777777776655554444431 11 112333357789999999887
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEee-cCCCC-CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 650 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l~~~~-~~g~~-~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F 650 (840)
++|++.|++++++..++.||++.|+++... .+|.+ ...+.+++++.+|.|++.||++|||++|+++++++++.+.++|
T Consensus 267 ~~~~~~A~~l~~~~~~~gwd~~~Gg~~~~~d~~g~~~~~~k~~W~qaEal~a~l~ly~~tgd~~yl~~a~~~~~~~~~~~ 346 (402)
T 3gt5_A 267 EWLVPVARSLFDVAVARSWDAVRGGLCYGFAPDGTICDDDKYFWVQAESLAAAALLATRSGDERYWQWYDRLWAYAWQHM 346 (402)
T ss_dssp TTHHHHHHHHHHHHHHHHBCTTTCSBCSEECTTSCEEECCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCCeeeCCcceeHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999998888877654 45554 5678999999999999999999999999999999999999999
Q ss_pred ccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 003187 651 LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 693 (840)
Q Consensus 651 ~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~Llr 693 (840)
.|++.|+||+.-..+..++...|. .-+..|.++..|+..+++
T Consensus 347 ~D~~~G~W~~~l~~dg~~~~~~k~-~~~K~~YH~~~a~~e~~~ 388 (402)
T 3gt5_A 347 VDHRYGAWYRLLDGDNRKYNDEKS-PAGKTDYHTMGACHEVLN 388 (402)
T ss_dssp BCTTTCSBCSEECTTSCBCCSCCB-CTTCSSHHHHHHHHHHHT
T ss_pred cCCCCCeEEEEECCCCCCCCCCCC-CCCCCCccHHHHHHHHHH
Confidence 999999999876655554443332 245678888888777654
No 9
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=99.89 E-value=1.1e-21 Score=218.42 Aligned_cols=340 Identities=11% Similarity=0.044 Sum_probs=222.1
Q ss_pred HHHHHHHHHH-HhcccCCCCCC-CC---CCC-CCC--hhHH--HHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCC
Q 003187 283 NALRLCAEQL-SKSYDSRFGGF-GS---APK-FPR--PVEI--QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGG 352 (840)
Q Consensus 283 ~~~~~~~~~l-~~~~D~~~GGf-g~---aPK-FP~--~~~l--~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GG 352 (840)
++.+.++..| ...+|+ +||| .. ..+ .|. .... +++.-+...... ..+++..+++|.++++.+.+ -
T Consensus 15 ~l~~~~l~fw~~~~~D~-~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~---~~~~~~~~~~A~~~~~~l~~-~ 89 (388)
T 2gz6_A 15 ALLNDVLPFWENHSLDS-EGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQ---LEKRENWLKIARNGAKFLAQ-H 89 (388)
T ss_dssp HHHHTHHHHHHHHCBCT-TSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHhHHHHHHhcCCCC-CCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHH-h
Confidence 3456677888 669999 9996 22 233 222 1111 222222221111 02357899999999999988 4
Q ss_pred CcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcc
Q 003187 353 IHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSA 432 (840)
Q Consensus 353 i~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~ 432 (840)
++|. .|||| +++|++..+..-.|.+|+||++|.+++++|++|+++.|++.|+++++++++.+.+++ |++.....+..
T Consensus 90 ~~~~-~Gg~~-~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~~-g~~~~~~~~~~ 166 (388)
T 2gz6_A 90 GRDD-EGNWY-FALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNPK-GKYTKTYPGTR 166 (388)
T ss_dssp SBCT-TSCBC-SEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC---------------CC
T ss_pred cCCC-CCCEE-EEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-cccCcccCCCC
Confidence 5676 58999 589988887667899999999999999999999999999999999999999998765 55543222221
Q ss_pred cccccccccccc-hhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHH
Q 003187 433 ETEGATRKKEGA-FYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 511 (840)
Q Consensus 433 ~~~~~~~~~EGa-yY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~ 511 (840)
+ ..|. -|. + -...+.+.|.++.+ +.+ .+...+.
T Consensus 167 ~-------~~~~~~~~--~---~~~all~l~~~t~d---------------------------~~~-------~~~A~~~ 200 (388)
T 2gz6_A 167 P-------MKALAVPM--I---LANLTLEMEWLLPQ---------------------------ETL-------ENVLAAT 200 (388)
T ss_dssp C-------CEETHHHH--H---HHHHHHHTGGGSCH---------------------------HHH-------HHHHHHH
T ss_pred C-------CCCCCHHH--H---HHHHHHHHHHHcCC---------------------------HHH-------HHHHHHH
Confidence 1 0110 000 0 00111122222100 000 1233344
Q ss_pred HHHHHHHHHhhhcCCCCCCC-----------cchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHH
Q 003187 512 LGECRRKLFDVRSKRPRPHL-----------DDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAE 580 (840)
Q Consensus 512 l~~~r~kL~~~R~~R~~P~~-----------DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~ 580 (840)
++.+.+++.+....+.++++ ++.+.-+-|.-+++.|.++++++++ ++|++.|+
T Consensus 201 ~~~~~~~~~~~~~g~~~e~~~~~w~~~~~~~~~~~~pgh~~e~a~lL~~~~~~tgd----------------~~~~~~A~ 264 (388)
T 2gz6_A 201 VQEVMGDFLDQEQGLMYENVAPDGSHIDCFEGRLINPGHGIEAMWFIMDIARRKND----------------SKTINQAV 264 (388)
T ss_dssp HHHHHHTTEETTTTEECSEECTTSCCCCSTTTTEECHHHHHHHHHHHHHHHHHTTC----------------HHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHHcCC----------------HHHHHHHH
Confidence 44444444443333333322 2233334566788899999999998 79999999
Q ss_pred HHHHHHHHhccccCCCeEEEee-cCCCCC-----CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccc
Q 003187 581 SAASFIRRHLYDEQTHRLQHSF-RNGPSK-----APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 654 (840)
Q Consensus 581 ~~~~fl~~~l~d~~~G~l~~~~-~~g~~~-----~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~ 654 (840)
++++++.++.||++.|++++.. .+|.+. ..+.++.+|.++.|++.+|++|||++|+++|+++++.+.++|.|++
T Consensus 265 ~~~~~~~~~g~d~~~Gg~~~~~~~~g~~~~~~~~~~~~~W~qae~i~a~~~ly~~tgd~~yl~~a~~~~~~~~~~~~D~~ 344 (388)
T 2gz6_A 265 DVVLNILNFAWDNEYGGLYYFMDAAGHPPQQLEWDQKLWWVHLESLVALAMGYRLTGRDACWAWYQKMHDYSWQHFADPE 344 (388)
T ss_dssp HHHHHHHHHHBCTTTCSBCSCEETTSCCCSCTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHBCTT
T ss_pred HHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC
Confidence 9999999999998867777653 456653 4566778999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 003187 655 GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 693 (840)
Q Consensus 655 ~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~Llr 693 (840)
+|+||+.-..++.+.... ...-+..|-++..++..+++
T Consensus 345 ~G~w~~~l~~~g~~~~~~-~~~~~K~~YH~~~~~~~~~~ 382 (388)
T 2gz6_A 345 YGEWFGYLNRRGEVLLNL-KGGKWKGCFHVPRAMYLCWQ 382 (388)
T ss_dssp TSSBCCEECTTSCBSSCB-SCCSSCSSSHHHHHHHHHHH
T ss_pred CCceEEeeCCCcCCCCcC-CCCCCCCCcchHHHHHHHHH
Confidence 999998766555544322 22234578899877765543
No 10
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=99.89 E-value=4e-22 Score=225.70 Aligned_cols=246 Identities=10% Similarity=0.052 Sum_probs=190.7
Q ss_pred CcccCCCeEEEEecCCCCC-CCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceEeeccCC
Q 003187 353 IHDHVGGGFHRYSVDERWH-VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDAD 430 (840)
Q Consensus 353 i~D~v~GGF~RYsvD~~W~-vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~-Ggfysa~DAD 430 (840)
..|+. ||+ ++|.+|. +|++|||+++||+||++|+.||+ +|++.|+++|+++++||.+.|++++ ||||.+.|+|
T Consensus 27 ~~d~~--GF~--~ld~~g~~~~~~~k~~~~nar~i~~~a~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~d 101 (421)
T 2zbl_A 27 AVVPT--GFG--WLGNKGQIKEEMGTHLWITARMLHVYSVAAS-MGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQ 101 (421)
T ss_dssp GEETT--EEC--CBCTTSCBCGGGCEEHHHHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETT
T ss_pred CcCCC--Ccc--eECCCCCCCCCchhhHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCC
Confidence 57987 785 9999997 68899999999999999999998 9999999999999999999999986 9999999987
Q ss_pred cccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHH
Q 003187 431 SAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLN 510 (840)
Q Consensus 431 s~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~ 510 (840)
+.+.+
T Consensus 102 g~~~~--------------------------------------------------------------------------- 106 (421)
T 2zbl_A 102 GVVDA--------------------------------------------------------------------------- 106 (421)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred CCcCC---------------------------------------------------------------------------
Confidence 74210
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc
Q 003187 511 ILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL 590 (840)
Q Consensus 511 ~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l 590 (840)
+| ...-|+++|.|++. ++++++ ++|++.|+++.+++.+++
T Consensus 107 ----------------------~k-~lyd~Af~i~al~~-~~~tg~----------------~~~l~~a~~~~~~l~~~~ 146 (421)
T 2zbl_A 107 ----------------------SK-QGYQHFFALLGAAS-AVTTGH----------------PEARKLLDYTIEVIEKYF 146 (421)
T ss_dssp ----------------------CE-EHHHHHHHHHHHHH-HHTTTC----------------TTHHHHHHHHHHHHHHHT
T ss_pred ----------------------ch-hHHHHHHHHHHHHH-HHHhCC----------------ccHHHHHHHHHHHHHHHh
Confidence 01 11236999999999 899987 789999999999999999
Q ss_pred cccCCCeEEEeec-CCCC-CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCc---cccCCCCC
Q 003187 591 YDEQTHRLQHSFR-NGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGED 665 (840)
Q Consensus 591 ~d~~~G~l~~~~~-~g~~-~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Gg---yf~t~~~~ 665 (840)
+|++.|+++.+.. +++. .....++.+++++.+++++|++|++++|++.|+++++.+.+++.+..+|. +|...+
T Consensus 147 ~d~~~Ggf~~~~d~d~~~~~~~~~~n~~m~~~~al~~l~~~tgd~~~~~~A~~~~~~~~~~~~~~~~~~l~~~f~~~~-- 224 (421)
T 2zbl_A 147 WSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQW-- 224 (421)
T ss_dssp EETTTTEECCEECTTSCSBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCCCCGGGTTCCCCEECTTS--
T ss_pred ccCCCCCeeeeecCCCCcccccCCCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhccCCCCchhhhcCCcc--
Confidence 9986788776643 3222 12345677888999999999999999999999999999999998865554 443322
Q ss_pred Ccccccc-cc-CCCC-----CCCChHHHHHHHHHHHHHHhCCCCc--h-HHHHHHHHHHHHHHHHH
Q 003187 666 PSVLLRV-KE-DHDG-----AEPSGNSVSVINLVRLASIVAGSKS--D-YYRQNAEHSLAVFETRL 721 (840)
Q Consensus 666 ~~l~~R~-k~-~~D~-----a~PS~Ns~~a~~LlrL~~lt~~~~~--~-~y~~~A~~~l~~~~~~i 721 (840)
..+... .+ ..+- ..|.+.-.+++.|++++.++++..+ + .|.+.|.++........
T Consensus 225 -~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g 289 (421)
T 2zbl_A 225 -NPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDA 289 (421)
T ss_dssp -CBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHH
T ss_pred -ccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHHh
Confidence 111100 11 0111 2477777789999999999942112 3 79999998887765443
No 11
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=99.87 E-value=4.3e-21 Score=214.78 Aligned_cols=256 Identities=13% Similarity=0.081 Sum_probs=196.4
Q ss_pred HHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHH-HHHHH
Q 003187 315 IQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANV-YLDAF 393 (840)
Q Consensus 315 l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~-ya~Ay 393 (840)
.-.|+..+..++ ++..++.|..-.+.+..+ +-.++. .+--|-+++... |..+|
T Consensus 74 ~G~lw~~ye~Tg-------d~~~~~~a~~~~~~l~~~-~~~~~~------------------~~~HD~GF~~~~s~~~~y 127 (397)
T 2zzr_A 74 TGCLWLAYEYNQ-------DKKLKNIAHKNVLSFLNR-INNRIA------------------LDHHDLGFLYTPSCTAEY 127 (397)
T ss_dssp HHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH-HHTTCS------------------CCSSTHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHh-hhhccc------------------CCCCCchHHHHHHHHHHH
Confidence 345666666654 467888887777777652 222221 111134555554 89999
Q ss_pred HccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCC
Q 003187 394 SLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLS 473 (840)
Q Consensus 394 ~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~ 473 (840)
++|||+.|++++.+++++|...+ +|.|||..+-+....+ +
T Consensus 128 ~ltg~~~~~~~~~~aA~~L~~r~-~~~~g~iqsw~~~~~~-----------------------------------~---- 167 (397)
T 2zzr_A 128 RINGDVKALEATIKAADKLMERY-QEKGGFIQAWGELGYK-----------------------------------E---- 167 (397)
T ss_dssp HHHCCHHHHHHHHHHHHHHHTTE-ETTTTEECCSSSTTCG-----------------------------------G----
T ss_pred HHhCCHHHHHHHHHHHHHHHHHh-CcCCCEEEecccCCCC-----------------------------------C----
Confidence 99999999999999999999988 7788888765432100 0
Q ss_pred CCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHH
Q 003187 474 RMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKI 553 (840)
Q Consensus 474 ~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~ 553 (840)
++ +.++| |.|.|.+|+.|+++
T Consensus 168 ---------~~--------------------------------------------~~iID------~~mni~~L~~A~~~ 188 (397)
T 2zzr_A 168 ---------HY--------------------------------------------RLIID------CLLNIQLLFFAYEQ 188 (397)
T ss_dssp ---------GC--------------------------------------------EEETT------HHHHTHHHHHHHHH
T ss_pred ---------CC--------------------------------------------ceeec------hHhHHHHHHHHHHH
Confidence 00 11222 57789999999999
Q ss_pred hhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeec----CCCCC----CCCCcchH------HHH
Q 003187 554 LKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPSK----APGFLDDY------AFL 619 (840)
Q Consensus 554 ~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~----~g~~~----~~~~leDy------A~~ 619 (840)
+++ ++|++.|++.++++.++++++ +|+++|+++ +|++. ..|+++|| |++
T Consensus 189 ~gd----------------~~y~~~A~~ha~~~l~~~~r~-dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~ 251 (397)
T 2zzr_A 189 TGD----------------EKYRQVAVNHFYASANNVVRD-DSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWG 251 (397)
T ss_dssp HCC----------------HHHHHHHHHHHHHHHHHTBCT-TSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHH
T ss_pred hCC----------------HHHHHHHHHHHHHHHHhCcCC-CCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHH
Confidence 998 899999999999999999875 578999977 78764 78999996 999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC
Q 003187 620 ISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVA 699 (840)
Q Consensus 620 i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~ 699 (840)
|.|++++|++|+|++||+.|+++++.++++|- .+++.||++..++ ++.++++ ||+||++|.+|++|+++++
T Consensus 252 i~gl~~lY~~T~d~~yL~~A~~la~~~l~~~~-~d~~pywdt~~~~--~~~~~~D------~Sa~aiaA~~Ll~L~~~~~ 322 (397)
T 2zzr_A 252 IYGIPLSYRKMKDYQQIILFKGMTNYFLNRLP-EDKVSYWDLIFTD--GSGQPRD------TSATATAVCGIHEMLKYLP 322 (397)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCC-TTSCCBSBTTCCT--TSCCCBC------HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhH-HhCCccccCCCCC--CCCCcCC------CCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999993 2344588886543 3445443 9999999999999999997
Q ss_pred CCCchH--HHHHHHHHHHHHHHHH
Q 003187 700 GSKSDY--YRQNAEHSLAVFETRL 721 (840)
Q Consensus 700 ~~~~~~--y~~~A~~~l~~~~~~i 721 (840)
+....+ |++.|+++|+.+.+..
T Consensus 323 ~~~~~~~~Y~~~A~~~l~~l~~~y 346 (397)
T 2zzr_A 323 EVDPDKETYKYAMHTMLRSLIEQY 346 (397)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Confidence 522356 9999999999987643
No 12
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=99.82 E-value=3.3e-19 Score=198.65 Aligned_cols=258 Identities=18% Similarity=0.154 Sum_probs=195.0
Q ss_pred HHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHH-HHHHH
Q 003187 314 EIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLAN-VYLDA 392 (840)
Q Consensus 314 ~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~-~ya~A 392 (840)
..-.|+..+..++ ++..++.|..-.+.+..+ +-.+++-.-| |-+.+.. .|..+
T Consensus 47 ~~g~lw~~ye~Tg-------d~~~~~~a~~~~~~l~~~-~~~~~~~~~H------------------D~Gf~~~~s~~~~ 100 (377)
T 2ahf_A 47 WSGILWLCYEYTG-------DEQYREGAVRTVASFRER-LDRFENLDHH------------------NIGFLYSLSAKAQ 100 (377)
T ss_dssp HHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH-HTTTTTCCBS------------------THHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHHh-hhcccCCCCC------------------CchHhhHHHHHHH
Confidence 3345666666654 477888887777777652 3233221111 3566664 79999
Q ss_pred HHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCC
Q 003187 393 FSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDL 472 (840)
Q Consensus 393 y~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~ 472 (840)
|++|||+.|++++.+++++|...+. |.+|+..+-+.-.. .+|
T Consensus 101 y~ltg~~~~~~~~~~aA~~L~~r~~-~~~g~i~sw~~~~~----------------------------------~~~--- 142 (377)
T 2ahf_A 101 WIVEKDESARKLALDAADVLMRRWR-ADAGIIQAWGPKGD----------------------------------PEN--- 142 (377)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHTTEE-TTTTEECCBSSTTC----------------------------------TTT---
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCC-CCCCeEEeccCCCC----------------------------------CCC---
Confidence 9999999999999999999999875 67677655431000 000
Q ss_pred CCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHH
Q 003187 473 SRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 552 (840)
Q Consensus 473 ~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~ 552 (840)
.| +.++| |.|||.+|+.|++
T Consensus 143 ----------~~--------------------------------------------~~iID------~mmni~~L~~A~~ 162 (377)
T 2ahf_A 143 ----------GG--------------------------------------------RIIID------CLLNLPLLLWAGE 162 (377)
T ss_dssp ----------TT--------------------------------------------EEEGG------GGGGHHHHHHHHH
T ss_pred ----------Cc--------------------------------------------eEEec------hHHHHHHHHHHHH
Confidence 00 12233 3788999999999
Q ss_pred HhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeec----CCCC----CCCCCcchH------HH
Q 003187 553 ILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPS----KAPGFLDDY------AF 618 (840)
Q Consensus 553 ~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~----~g~~----~~~~~leDy------A~ 618 (840)
++++ ++|++.|++.++++.++++++ +|+++|+++ +|.+ ...|+++|| |+
T Consensus 163 ~~gd----------------~~y~~~A~~~a~~~l~~~~r~-dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw 225 (377)
T 2ahf_A 163 QTGD----------------PEYRRVAEAHALKSRRFLVRG-DDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAW 225 (377)
T ss_dssp HHCC----------------THHHHHHHHHHHHHHHHTBBT-TSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHH
T ss_pred HhCC----------------HHHHHHHHHHHHHHHHhCcCC-CCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHH
Confidence 9998 899999999999999999875 578999987 8887 788999996 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHh
Q 003187 619 LISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 698 (840)
Q Consensus 619 ~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt 698 (840)
+|.|++++|++|+|++||+.|+++++.++++| ..+++.||++.. +.++.+++ .||+||++|.+|++|++++
T Consensus 226 ~i~gl~~ly~~T~d~~yL~~A~~la~~~l~~~-~~d~~pywd~~~--~~~~~~~~------d~Sa~aiaA~~Ll~L~~~~ 296 (377)
T 2ahf_A 226 GIYGFALNSRYLGNADLLETAKRMARHFLARV-PEDGVVYWDFEV--PQEPSSYR------DSSASAITACGLLEIASQL 296 (377)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-CTTSSCBSBTTS--CCCTTSCB------CHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCChHHHHHHHHHHHHHHHhh-HHhCCcccccCC--CccCCCcc------CCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 333444888754 23444444 4899999999999999999
Q ss_pred CCC--CchHHHHHHHHHHHHHHHHH
Q 003187 699 AGS--KSDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 699 ~~~--~~~~y~~~A~~~l~~~~~~i 721 (840)
+.. ++++|++.|+++++.+.+..
T Consensus 297 ~~~~~~~~~Y~~~A~~~l~~l~~~y 321 (377)
T 2ahf_A 297 DESDPERQRFIDAAKTTVTALRDGY 321 (377)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccchHHHHHHHHHHHHHHHHHH
Confidence 611 13679999999999986543
No 13
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.79 E-value=1.5e-19 Score=177.11 Aligned_cols=121 Identities=16% Similarity=0.272 Sum_probs=100.0
Q ss_pred CCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHH
Q 003187 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (840)
Q Consensus 118 ~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~ 197 (840)
...|+|+.++++|+++|++++|||||+|+++||++|+.|+..+++++++.+.++.+||.|+||.+ .+++...|
T Consensus 24 ~~~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e-~~~~~~~~------ 96 (151)
T 3ph9_A 24 GDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE-TTDKNLSP------ 96 (151)
T ss_dssp CTTSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC-CSCGGGCT------
T ss_pred cCCCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC-chhhHhhc------
Confidence 45799999999999999999999999999999999999999999999999999889999999954 44543333
Q ss_pred hcCCCCCCcEEEECCCCceeccc-cccC-CCCCCCcccHHHHHHHHHHHHHH
Q 003187 198 LYGGGGWPLSVFLSPDLKPLMGG-TYFP-PEDKYGRPGFKTILRKVKDAWDK 247 (840)
Q Consensus 198 ~~g~~G~P~~vfl~p~g~~~~~~-tY~p-~~~~~~~~~f~~~L~~i~~~~~~ 247 (840)
++.|+|+++|++|+|+++... |+.+ +.-.+...+|.++|+.+.++++.
T Consensus 97 --~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~ 146 (151)
T 3ph9_A 97 --DGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRL 146 (151)
T ss_dssp --TCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSC
T ss_pred --CCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHH
Confidence 788999999999999998763 3322 11123345799999999988764
No 14
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=99.74 E-value=3.3e-16 Score=173.19 Aligned_cols=240 Identities=15% Similarity=0.080 Sum_probs=179.7
Q ss_pred HHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 003187 314 EIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAF 393 (840)
Q Consensus 314 ~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay 393 (840)
.+..|+.++..++ ++..++++.++++.+.. ..+|.+ ++ ..+=|+|.++.++.++|
T Consensus 51 ~~~~l~d~~~~tg-------d~~y~~~a~~~~~~~~~-----~~~~~~----------~~---~~~DD~a~~~la~~~ay 105 (349)
T 3k7x_A 51 LVEVRLDAYLRTK-------KQADLEVAEKTYLHNKN-----RNGGTL----------IH---DFYDDMLWNALAAYRLY 105 (349)
T ss_dssp HHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH-----HTTSSS----------CC---SBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHh-----cCCCCC----------Cc---cCccHHHHHHHHHHHHH
Confidence 3466777777654 47899999999987764 122222 11 22557999999999999
Q ss_pred HccCChHHHHHHHHHHHHH-HHhccCC-CCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcC
Q 003187 394 SLTKDVFYSYICRDILDYL-RRDMIGP-GGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCD 471 (840)
Q Consensus 394 ~~tgd~~y~~~A~~t~~fl-~r~m~~~-~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~ 471 (840)
++|+++.|++.|++..+++ .+...++ +|||++..+.+.
T Consensus 106 e~t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~~~~~---------------------------------------- 145 (349)
T 3k7x_A 106 KATGKSIYLEDAQLVWQDLVDTGWNDIMGGGFAWRRPQMY---------------------------------------- 145 (349)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHTBCSGGGSCBEEETTEEE----------------------------------------
T ss_pred HHHCCchHHHHHHHHHHHHHHhCCCCCCCCceEecCCCcc----------------------------------------
Confidence 9999999999999999999 5544333 488988642100
Q ss_pred CCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHH
Q 003187 472 LSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARAS 551 (840)
Q Consensus 472 ~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~ 551 (840)
.+|+ | -|++++.++++++
T Consensus 146 ------------~kna------------------------------------------------i--sN~~~~~~la~l~ 163 (349)
T 3k7x_A 146 ------------YKNT------------------------------------------------P--VNAPFIILSCWLY 163 (349)
T ss_dssp ------------EEEH------------------------------------------------H--HHHHHHHHHHHHH
T ss_pred ------------ccch------------------------------------------------h--hHHHHHHHHHHHH
Confidence 0111 1 3899999999999
Q ss_pred HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeec---CCCCCC-CCCcchHHHHHHHHHHHH
Q 003187 552 KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR---NGPSKA-PGFLDDYAFLISGLLDLY 627 (840)
Q Consensus 552 ~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~---~g~~~~-~~~leDyA~~i~aLl~LY 627 (840)
+++++ ++|++.|+++++++.++++|++ |.++.... +|.... ..+.++|+++|.|++.||
T Consensus 164 ~~tgd----------------~~Yl~~A~~~~~w~~~~l~d~~-g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~~LY 226 (349)
T 3k7x_A 164 NELNE----------------TKYLEWAMKTYEWQTKVLVRED-GFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLELY 226 (349)
T ss_dssp HHHCC----------------HHHHHHHHHHHHHHHHHHBCTT-SCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHhCC----------------HHHHHHHHHHHHHHHhcCCCCC-CeEecCCccCCCCccCCcCeeeHHHHHHHHHHHHHH
Confidence 99998 8999999999999999999976 66543321 233222 468889999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHH
Q 003187 628 EFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYR 707 (840)
Q Consensus 628 eaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~ 707 (840)
++|+|++||+.|++|++.+.++|+. +|-+++. ..++..||.+++++..|..|+.+++. +.|+
T Consensus 227 ~~T~d~~yl~~a~~l~~~~~~~f~~--~gi~~~~-------------~~~~D~~sFkgi~~r~L~~l~~~~p~---~~~~ 288 (349)
T 3k7x_A 227 RITKEAIYLDTANKTAAISLKELTE--DGIFKDE-------------GNGGDEGLFKGIFYRYFTDLIEETAN---KTYR 288 (349)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHEE--TTEECCC-------------CSSSGGGGHHHHHHHHHHHHHHHHTC---HHHH
T ss_pred HhhCcHHHHHHHHHHHHHHHHHhcc--CCcccCC-------------CCCccHHHHHHHHHHHHHHHHHHCCh---HHHH
Confidence 9999999999999999999999983 4444321 12456799999999999999999974 4455
Q ss_pred HHHHHHHH
Q 003187 708 QNAEHSLA 715 (840)
Q Consensus 708 ~~A~~~l~ 715 (840)
...+...+
T Consensus 289 ~~l~~sa~ 296 (349)
T 3k7x_A 289 DFVLNSCQ 296 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54443333
No 15
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.71 E-value=2.7e-17 Score=162.13 Aligned_cols=129 Identities=18% Similarity=0.306 Sum_probs=98.5
Q ss_pred hhhcccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccH----
Q 003187 112 YLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV---- 187 (840)
Q Consensus 112 YL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~---- 187 (840)
|-+.+ .....|....+++++.|+.+||||+|+|+++||++|+.|+.++|+++++.+.++++|+.|+||.++.+++
T Consensus 22 ~~~~~-~~~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~ 100 (172)
T 3f9u_A 22 FNLYT-NEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPV 100 (172)
T ss_dssp -------CCCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEE
T ss_pred ccccC-cccccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhh
Confidence 44433 3455677777999999999999999999999999999999999999999999998999999999877654
Q ss_pred --------------HHHHHHHHHHhcCCCCCCcEEEECCCCceeccc-cccC-CCCCCCcccHHHHHHHHHHHHHH
Q 003187 188 --------------DKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYFP-PEDKYGRPGFKTILRKVKDAWDK 247 (840)
Q Consensus 188 --------------~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~-tY~p-~~~~~~~~~f~~~L~~i~~~~~~ 247 (840)
............++.|+|+++|+|++|+++... +|.+ + ..|.+.|+++.+.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~------~~l~~~l~~~l~~~~~ 170 (172)
T 3f9u_A 101 KIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDI------SKYINFLQTGLENYRK 170 (172)
T ss_dssp EEEETTEEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCH------HHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCH------HHHHHHHHHHHHHhhc
Confidence 111111111223899999999999999998753 5555 3 3688888888777664
No 16
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.70 E-value=2.3e-17 Score=160.72 Aligned_cols=123 Identities=18% Similarity=0.253 Sum_probs=102.6
Q ss_pred cccccccccCCChhhhcccCCCccCccchHHHHHHHHhcCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEE
Q 003187 99 NKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSI 177 (840)
Q Consensus 99 ~~~~NrL~~e~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~v 177 (840)
+..+||+..+.|++|++.+...++| ....++++.++.++|||+|.|+ ++||++|+.|....++++++++..+.+|+.|
T Consensus 9 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v 87 (154)
T 2ju5_A 9 SAARRRASGENLQQTRPIAAANLQW-ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMV 87 (154)
T ss_dssp --CHHHHCCCCSSCCCSSCCCCCCE-ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEE
T ss_pred HHHHhhhhhhcchhhhhcccCCCCC-CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEE
Confidence 4578999999999999999999999 7779999999999999999998 9999999999999999999999988899999
Q ss_pred EEcCCCCccHHH----HHHHHHHHhcCCCCCCcEEEECCCCceecccccc
Q 003187 178 KVDREERPDVDK----VYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYF 223 (840)
Q Consensus 178 kvD~ee~pd~~~----~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~tY~ 223 (840)
+||.++.+++.. .-....+ ..++.|+|+++|+|++|+++...+|.
T Consensus 88 ~vd~~~~~~~~~~~~~~~~~l~~-~~~v~~~Pt~~~~d~~G~~~~~~G~~ 136 (154)
T 2ju5_A 88 EVDFPQKNHQPEEQRQKNQELKA-QYKVTGFPELVFIDAEGKQLARMGFE 136 (154)
T ss_dssp EEECCSSCCCCHHHHHHHHHHHH-HTTCCSSSEEEEECTTCCEEEEECCC
T ss_pred EecCccccCCChhhHhhHHHHHH-HcCCCCCCEEEEEcCCCCEEEEecCC
Confidence 999987652110 0011222 23899999999999999998754555
No 17
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.51 E-value=2.3e-14 Score=134.78 Aligned_cols=112 Identities=21% Similarity=0.406 Sum_probs=88.3
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcC---CCCccHHHHHHHHHHH
Q 003187 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR---EERPDVDKVYMTYVQA 197 (840)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~---ee~pd~~~~y~~~~~~ 197 (840)
++.....+++++.|++++|||+|.|+++||++|+.|.. .|+++++++.++.+++.++||. ++.+++.+.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~------ 84 (133)
T 3fk8_A 12 ADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAY------ 84 (133)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHT------
T ss_pred cChHhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHh------
Confidence 33334459999999999999999999999999999987 6999999999988999999999 7777776665
Q ss_pred hcCC---CCCCcEEEECCCCceecc--ccccCCCCCCCcccHHHHHHHH
Q 003187 198 LYGG---GGWPLSVFLSPDLKPLMG--GTYFPPEDKYGRPGFKTILRKV 241 (840)
Q Consensus 198 ~~g~---~G~P~~vfl~p~g~~~~~--~tY~p~~~~~~~~~f~~~L~~i 241 (840)
++ .|+|+++|++++|+++.. ++.++.....+...+.+.|+++
T Consensus 85 --~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 85 --GDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp --TCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred --CCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 88 899999999999999865 2233322223334555555554
No 18
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=99.50 E-value=2.1e-13 Score=158.59 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=121.7
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHH
Q 003187 538 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA 617 (840)
Q Consensus 538 sWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA 617 (840)
.-|++||.|||.|++++.+. .++.++||+.|+++++|+.++.. ++ +++|. .+++|||
T Consensus 250 ~~agl~aAALA~Asrvf~d~-----------~~~a~~~L~aA~~a~~fa~~~~~-----~y---~~~g~---~~~~De~- 306 (586)
T 3h7l_A 250 QGGGVAIAALAAASRLGVHG-----------EYDQQKYRNAAENGYWHLKEHNT-----QY---LNDGE---ENIIDEY- 306 (586)
T ss_dssp GTHHHHHHHHHHHTTSSSCS-----------SSCHHHHHHHHHHHHHHHHHHHH-----HH---STTSC---CCHHHHH-
T ss_pred CcHHHHHHHHHHHhcccCCC-----------CcChHHHHHHHHHHHHHHHhcCc-----cc---cCCCC---ccchhHH-
Confidence 34899999999999995431 12237899999999999998853 12 23443 6889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHH
Q 003187 618 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 697 (840)
Q Consensus 618 ~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~l 697 (840)
++++|+++||++|+|..||+.|+++.+.+.++|++.+.|+||++..++ |.|+.+|++ .+++.+.+|++|..+
T Consensus 307 ~~~WAA~eLy~ATgd~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~-----~~r~~~d~a---~~gl~~iaLl~l~~~ 378 (586)
T 3h7l_A 307 CALLASVELFKATKETRYLEESRLWAQRLVARQMSDEQIQHFWSANQD-----GSRPYFHAA---EAGLPTIALCEYLAI 378 (586)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSS-----SSSBCCCTT---TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccCCccCCCcCCCccc-----CCccccccc---ccHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999988888899887654 688899986 689999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHHHH
Q 003187 698 VAGSKSDYYRQNAEHSLAVFET 719 (840)
Q Consensus 698 t~~~~~~~y~~~A~~~l~~~~~ 719 (840)
+++ ..++++++++|....+
T Consensus 379 ~~d---~~~~~~a~~~i~~~~d 397 (586)
T 3h7l_A 379 EDD---SVQTESVKCIVNRACE 397 (586)
T ss_dssp CCS---TTTTHHHHHHHHHHHH
T ss_pred cCC---hHHHHHHHHHHHHHhh
Confidence 985 4466777777777655
No 19
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=99.19 E-value=5.5e-15 Score=138.33 Aligned_cols=98 Identities=26% Similarity=0.414 Sum_probs=82.9
Q ss_pred CccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC--CCccHHHHHHHHHHH
Q 003187 120 PVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQA 197 (840)
Q Consensus 120 ~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e--e~pd~~~~y~~~~~~ 197 (840)
.|+|..+ +++++.|+.++|||+|.|+++||++|+.|....+.++++++.++.+++.++||.+ +.+++.+.|
T Consensus 2 ~i~w~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~------ 74 (130)
T 2lst_A 2 SLRWYPY-PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRY------ 74 (130)
Confidence 4789999 9999999999999999999999999999999999999999999888999999984 455665555
Q ss_pred hcCCCCCCcEEEECCC-Cce--ecc-ccccCCC
Q 003187 198 LYGGGGWPLSVFLSPD-LKP--LMG-GTYFPPE 226 (840)
Q Consensus 198 ~~g~~G~P~~vfl~p~-g~~--~~~-~tY~p~~ 226 (840)
++.|+|+++|++|+ |++ +.. .++.+++
T Consensus 75 --~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~ 105 (130)
T 2lst_A 75 --RVPGTPTFVFLVPKAGAWEEVGRLFGSRPRA 105 (130)
Confidence 78899999999985 887 543 2344443
No 20
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=4e-13 Score=125.40 Aligned_cols=92 Identities=24% Similarity=0.342 Sum_probs=78.2
Q ss_pred CccCc-cchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC--CccHHHHHHHHHH
Q 003187 120 PVDWF-AWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQ 196 (840)
Q Consensus 120 ~v~W~-~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee--~pd~~~~y~~~~~ 196 (840)
.++|. ...+++++.++.++|||+|.|+++||++|+.|....++++++++.++.+|+.++||.++ .+++.+.|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~----- 82 (130)
T 2kuc_A 8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKY----- 82 (130)
T ss_dssp CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHT-----
T ss_pred CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHc-----
Confidence 45553 23488999999999999999999999999999998889999999999999999999984 34444443
Q ss_pred HhcCCCCCCcEEEECCCCceecc
Q 003187 197 ALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 197 ~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
++.|+|+++|++++|+++..
T Consensus 83 ---~v~~~Pt~~~~d~~G~~~~~ 102 (130)
T 2kuc_A 83 ---GVHAYPTLLFINSSGEVVYR 102 (130)
T ss_dssp ---TCCSSCEEEEECTTSCEEEE
T ss_pred ---CCCCCCEEEEECCCCcEEEE
Confidence 89999999999999998864
No 21
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=99.40 E-value=6.8e-12 Score=138.68 Aligned_cols=202 Identities=17% Similarity=0.054 Sum_probs=154.4
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHH
Q 003187 379 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAIL 457 (840)
Q Consensus 379 LYD-NA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~ 457 (840)
-|. ||.++.++.++|++|||+.|+++|++++.++..+ +++++ .
T Consensus 44 ~yWW~a~~~~~l~d~~~~tgd~~y~~~a~~~~~~~~~~----~~~~~------~-------------------------- 87 (349)
T 3k7x_A 44 NYWWLAHLVEVRLDAYLRTKKQADLEVAEKTYLHNKNR----NGGTL------I-------------------------- 87 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----TTSSS------C--------------------------
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc----CCCCC------C--------------------------
Confidence 566 9999999999999999999999999999998763 11111 0
Q ss_pred HHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhh
Q 003187 458 FKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIV 537 (840)
Q Consensus 458 ~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKilt 537 (840)
.-+.||.
T Consensus 88 ----------------------------------------------------------------------~~~~DD~--- 94 (349)
T 3k7x_A 88 ----------------------------------------------------------------------HDFYDDM--- 94 (349)
T ss_dssp ----------------------------------------------------------------------CSBHHHH---
T ss_pred ----------------------------------------------------------------------ccCccHH---
Confidence 0023666
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CCeEEEeecCCCCCCCCCcchH
Q 003187 538 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-THRLQHSFRNGPSKAPGFLDDY 616 (840)
Q Consensus 538 sWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~-~G~l~~~~~~g~~~~~~~leDy 616 (840)
+.++.|+.++|+++++ ++||+.|+++++++....|++. +|++++.... ...+-.-..
T Consensus 95 ---a~~~la~~~aye~t~~----------------~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~~~---~~~knaisN 152 (349)
T 3k7x_A 95 ---LWNALAAYRLYKATGK----------------SIYLEDAQLVWQDLVDTGWNDIMGGGFAWRRPQ---MYYKNTPVN 152 (349)
T ss_dssp ---HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHTBCSGGGSCBEEETTE---EEEEEHHHH
T ss_pred ---HHHHHHHHHHHHHHCC----------------chHHHHHHHHHHHHHHhCCCCCCCCceEecCCC---ccccchhhH
Confidence 8888999999999998 8999999999999955556653 5788775321 011223378
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCC--CCCChHHHHHHHHHHH
Q 003187 617 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDG--AEPSGNSVSVINLVRL 694 (840)
Q Consensus 617 A~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~--a~PS~Ns~~a~~LlrL 694 (840)
+.++.+++.||++|+|++|+++|+++++.+.++++|++ |.+|+..... .....++ .---.+++++..+..|
T Consensus 153 ~~~~~~la~l~~~tgd~~Yl~~A~~~~~w~~~~l~d~~-g~v~Dg~~~~------~~g~~~~~~~~tYnqg~~l~g~~~L 225 (349)
T 3k7x_A 153 APFIILSCWLYNELNETKYLEWAMKTYEWQTKVLVRED-GFVEDGINRL------EDGTIDYEWKFTYNQGVYIGANLEL 225 (349)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHBCTT-SCBCCEECTT------SSSCBCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-CeEecCCccC------CCCccCCcCeeeHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 7787643210 0000111 2223667899999999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003187 695 ASIVAGSKSDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 695 ~~lt~~~~~~~y~~~A~~~l~~~~~~i 721 (840)
++.|++ +.|+++|+++++.+...+
T Consensus 226 Y~~T~d---~~yl~~a~~l~~~~~~~f 249 (349)
T 3k7x_A 226 YRITKE---AIYLDTANKTAAISLKEL 249 (349)
T ss_dssp HHHHCC---HHHHHHHHHHHHHHHHHH
T ss_pred HHhhCc---HHHHHHHHHHHHHHHHHh
Confidence 999986 889999999999876544
No 22
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.32 E-value=1.3e-12 Score=123.63 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=78.6
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003187 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (840)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g 200 (840)
+.+....++.++.++ +|||+|.|+++||++|+.|+...|+++++++.++ +++.++||.++..+-.... ++. .+
T Consensus 16 ~~~~~~~~~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l---~~~-~~ 88 (134)
T 2fwh_A 16 IKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVAL---LKH-LN 88 (134)
T ss_dssp CCSHHHHHHHHHHHT--TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHH---HHH-TT
T ss_pred ecCHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHH---HHH-cC
Confidence 333333455555543 9999999999999999999999999999999886 5999999997654332222 222 38
Q ss_pred CCCCCcEEEECCCCcee--cc-ccccCCCCCCCcccHHHHHHHH
Q 003187 201 GGGWPLSVFLSPDLKPL--MG-GTYFPPEDKYGRPGFKTILRKV 241 (840)
Q Consensus 201 ~~G~P~~vfl~p~g~~~--~~-~tY~p~~~~~~~~~f~~~L~~i 241 (840)
+.|+|+++|++++|+++ .. .++.+++ .|.+.|+++
T Consensus 89 v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~------~l~~~l~~~ 126 (134)
T 2fwh_A 89 VLGLPTILFFDGQGQEHPQARVTGFMDAE------TFSAHLRDR 126 (134)
T ss_dssp CCSSSEEEEECTTSCBCGGGCBCSCCCHH------HHHHHHHHC
T ss_pred CCCCCEEEEECCCCCEeeeeeeeeccCHH------HHHHHHHhc
Confidence 99999999999999997 33 3455533 455555544
No 23
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=99.31 E-value=5.2e-11 Score=132.73 Aligned_cols=253 Identities=15% Similarity=0.072 Sum_probs=177.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCC-CCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHH
Q 003187 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVP-HFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYL 412 (840)
Q Consensus 334 ~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vP-HFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl 412 (840)
++++++.+...-+.++. -|+. .|||.| +-+..- .| .--.+..||=++|.+++.|+++++|+.|+++|++.++++
T Consensus 106 ~~~~~~~~~~aA~~L~~--r~~~-~~g~i~-sw~~~~-~~~~~~~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~ 180 (377)
T 2ahf_A 106 DESARKLALDAADVLMR--RWRA-DAGIIQ-AWGPKG-DPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKS 180 (377)
T ss_dssp CHHHHHHHHHHHHHHHT--TEET-TTTEEC-CBSSTT-CTTTTTEEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--hCCC-CCCeEE-eccCCC-CCCCCceEEechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57899999999999887 4664 567776 322100 12 123688999999999999999999999999999999999
Q ss_pred HHhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccC
Q 003187 413 RRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELN 492 (840)
Q Consensus 413 ~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~ 492 (840)
++.+..++|.+|....-|.. .|..+ .+.+
T Consensus 181 l~~~~r~dgs~~h~~~~D~~---------tG~~~---------------~~~t--------------------------- 209 (377)
T 2ahf_A 181 RRFLVRGDDSSYHTFYFDPE---------NGNAI---------------RGGT--------------------------- 209 (377)
T ss_dssp HHHTBBTTSCBCSEEEECTT---------TCCEE---------------EEEC---------------------------
T ss_pred HHhCcCCCCCeEEEEEeeCC---------CCCee---------------eCCC---------------------------
Confidence 99999888888876443321 00000 0011
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCh
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDR 572 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~ 572 (840)
...+.||..=+--+|.+|.||+.+|+++++
T Consensus 210 ----------------------------------~qG~~dds~WaRGqAw~i~gl~~ly~~T~d---------------- 239 (377)
T 2ahf_A 210 ----------------------------------HQGNTDGSTWTRGQAWGIYGFALNSRYLGN---------------- 239 (377)
T ss_dssp ----------------------------------SSSSSTTSCBHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred ----------------------------------cCCcCCcchhHHHHHHHHHHHHHHHHHHCC----------------
Confidence 123456643334489999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCe-EEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS-----GTKWLVWAIELQNTQ 646 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~-l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTg-----d~~yL~~A~~L~~~~ 646 (840)
++||+.|+++++++++++ +++|. ++.+..+..+..+.-.+..|.++.||++|++.++ +++|++.|+++++.+
T Consensus 240 ~~yL~~A~~la~~~l~~~--~~d~~pywd~~~~~~~~~~~d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l 317 (377)
T 2ahf_A 240 ADLLETAKRMARHFLARV--PEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTAL 317 (377)
T ss_dssp HHHHHHHHHHHHHHHTTC--CTTSSCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhh--HHhCCcccccCCCccCCCccCCCHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH
Confidence 899999999999999998 34554 4443222222233445677899999999999996 788999999999999
Q ss_pred HHHccccc---CCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHh
Q 003187 647 DELFLDRE---GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 698 (840)
Q Consensus 647 ~~~F~D~~---~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt 698 (840)
.+.+.... .+|......-+ .......|..+|.+..-.+++|.||...+
T Consensus 318 ~~~y~~~~~~~~~g~L~h~~~~----~~~~~~~d~~~~ygDy~~~Eal~r~~~~~ 368 (377)
T 2ahf_A 318 RDGYAERDDGEAEGFIRRGSYH----VRGGISPDDYTIWGDYYYLEALLRLERGV 368 (377)
T ss_dssp HHHTBCCCCSSCCCSBSCBCSB----TTTTBSSSBCBHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCCCCCCCeEEeccccc----CCCCCCCCcCccHHHHHHHHHHHHHHcCC
Confidence 88876532 12322221100 00111246778888888999999987743
No 24
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=99.29 E-value=3e-11 Score=135.13 Aligned_cols=177 Identities=12% Similarity=0.138 Sum_probs=137.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhcC------CCC--CCCcchhhhcHH---HHHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 003187 501 LGMPLEKYLNILGECRRKLFDVRSK------RPR--PHLDDKVIVSWN---GLVISSFARASKILKSEAESAMFNFPVVG 569 (840)
Q Consensus 501 ~g~~~e~l~~~l~~~r~kL~~~R~~------R~~--P~~DdKiltsWN---al~I~ALa~A~~~~~d~~~~~~~~~~~~~ 569 (840)
.+++.+++++.|+.++++|.+.|.. |.+ |.+|+|++++|| |+++.+|..+|+++||
T Consensus 20 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~f~~~~~~~~~~d~k~~~~W~Wt~G~~~~gl~~~ye~Tgd------------- 86 (382)
T 3pmm_A 20 RFIARSELQALIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGD------------- 86 (382)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCCCTTCTTCEECTTSCEECSSSTTSCSHHHHHHHHHHHHHHHHHCC-------------
T ss_pred hcCCHHHHHHHHHHHHHHHHhccCccccccccCCccccccCCCCcCccccHHHHHHHHHHHHHHHCC-------------
Confidence 4688899999999999999999876 555 889999999999 9999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003187 570 SDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 649 (840)
Q Consensus 570 ~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~ 649 (840)
++|++.|++..+.+.+. +|.+ ...+|++++. +++++|+.|||++|++.|.++++.+.++
T Consensus 87 ---~~y~~~a~~~~~~~~~~-----~~~~------------~n~D~~~~~~-~l~~lY~~Tgd~~Yl~~a~~~ad~L~~~ 145 (382)
T 3pmm_A 87 ---IEMRDIIDRWFADRFAE-----GATT------------KNVNTMAPFL-TLAYRFEETGRMAYLPWLESWAEWAMHE 145 (382)
T ss_dssp ---HHHHHHHHHHHHHHHHH-----CCCC------------CCTTTTTTHH-HHHHHHHHHCCGGGHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHcC-----CCCc------------CcccchHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 89999999987754331 2211 2456776654 8999999999999999999999999888
Q ss_pred cccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003187 650 FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 722 (840)
Q Consensus 650 F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~ 722 (840)
+.+.+.|+|+....+.+. ..+. ..| +..+.+..|.+++++||+ ++|.+.|.+.+..+...+.
T Consensus 146 ~~r~~~Ggf~~~~~~~~~-~~~~--WiD-----gl~M~~p~La~~~~~tgd---~~y~d~A~~q~~~~~~~l~ 207 (382)
T 3pmm_A 146 MPRTEQGGMQHMTLAEEN-HQQM--WDD-----TLMMTVLPLAKIGKLLNR---PQYVEEATYQFLLHVQNLM 207 (382)
T ss_dssp SCBCGGGCBCCCCSSCCC-TTEE--ETT-----HHHHTHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHB
T ss_pred CCCCcCCCeeeecCCCCC-CCcE--Eec-----chhhhHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHcc
Confidence 887778888764211100 0000 112 344666778999999996 8899999887777777664
No 25
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=99.25 E-value=7.9e-11 Score=131.88 Aligned_cols=211 Identities=11% Similarity=0.080 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003187 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (840)
Q Consensus 334 ~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~ 413 (840)
++++++.+..+-+.++. -|+ ..|||.| +.+..- -|.-..+..||-+-|.+++.|+++++|+.|+++|++.+++++
T Consensus 132 ~~~~~~~~~~aA~~L~~--r~~-~~~g~iq-sw~~~~-~~~~~~~iID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l 206 (397)
T 2zzr_A 132 DVKALEATIKAADKLME--RYQ-EKGGFIQ-AWGELG-YKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASA 206 (397)
T ss_dssp CHHHHHHHHHHHHHHHT--TEE-TTTTEEC-CSSSTT-CGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--HhC-cCCCEEE-ecccCC-CCCCCceeechHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 57899999999999987 564 4577776 443211 122237889999999999999999999999999999999999
Q ss_pred HhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCC
Q 003187 414 RDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELND 493 (840)
Q Consensus 414 r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~ 493 (840)
+.+..++|..|+...-|.. .|. . .+
T Consensus 207 ~~~~r~dgs~~h~~~~d~~----------------------------------~G~----------------~-~~---- 231 (397)
T 2zzr_A 207 NNVVRDDSSAFHTFYFDPE----------------------------------TGE----------------P-LK---- 231 (397)
T ss_dssp HHTBCTTSCBCSEEEECTT----------------------------------TCC----------------E-EE----
T ss_pred HhCcCCCCCeEEEEEeeCC----------------------------------CCC----------------c-cc----
Confidence 9999888988887655431 010 0 00
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChH
Q 003187 494 SSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRK 573 (840)
Q Consensus 494 ~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~ 573 (840)
......+.||..=+--+|.+|.||+.+|++++| +
T Consensus 232 ------------------------------~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d----------------~ 265 (397)
T 2zzr_A 232 ------------------------------GVTRQGYSDESSWARGQAWGIYGIPLSYRKMKD----------------Y 265 (397)
T ss_dssp ------------------------------EECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCC----------------H
T ss_pred ------------------------------CCcccccCcchhhHHHHHHHHHHHHHHHHHHCC----------------H
Confidence 000122456653333489999999999999998 8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCe-EEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCC---HH--HHHHHHHHHHHHH
Q 003187 574 EYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSG---TK--WLVWAIELQNTQD 647 (840)
Q Consensus 574 ~yle~A~~~~~fl~~~l~d~~~G~-l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd---~~--yL~~A~~L~~~~~ 647 (840)
+||+.|+++++++++++. ++|. ++.+..++.+..+.=.+..|.++.||++|++.|++ .+ |++.|+++++.+.
T Consensus 266 ~yL~~A~~la~~~l~~~~--~d~~pywdt~~~~~~~~~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~ 343 (397)
T 2zzr_A 266 QQIILFKGMTNYFLNRLP--EDKVSYWDLIFTDGSGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSLI 343 (397)
T ss_dssp HHHHHHHHHHHHHHHTCC--TTSCCBSBTTCCTTSCCCBCHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhH--HhCCccccCCCCCCCCCcCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHH
Confidence 999999999999999983 4454 55443332222223356788999999999999987 78 9999999999998
Q ss_pred HHccc
Q 003187 648 ELFLD 652 (840)
Q Consensus 648 ~~F~D 652 (840)
..+..
T Consensus 344 ~~y~~ 348 (397)
T 2zzr_A 344 EQYSN 348 (397)
T ss_dssp HHTBC
T ss_pred HHHhc
Confidence 87654
No 26
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.4e-11 Score=121.98 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=92.2
Q ss_pred CCCccCcc-chHHHHHHH----HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHH
Q 003187 118 HNPVDWFA-WGEEAFAEA----RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM 192 (840)
Q Consensus 118 ~~~v~W~~-~~~eAl~~A----k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~ 192 (840)
..-..|+. -+++|+++| |+++|++||+++.+||.+|++|.+++|.|++|.++||+|||...+|++.... ...++
T Consensus 30 ~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~-~~~~~ 108 (178)
T 2ec4_A 30 DCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSN-RARFL 108 (178)
T ss_dssp SCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHH-HHHHH
T ss_pred CCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchh-hhhhh
Confidence 33455665 469999999 9999999999999999999999999999999999999999999999985332 22221
Q ss_pred H---------HHHHh--cCCCCCCcEEEECCCCc---eecc-ccccCCCCCCCcccHHHHHHHHHHHHH
Q 003187 193 T---------YVQAL--YGGGGWPLSVFLSPDLK---PLMG-GTYFPPEDKYGRPGFKTILRKVKDAWD 246 (840)
Q Consensus 193 ~---------~~~~~--~g~~G~P~~vfl~p~g~---~~~~-~tY~p~~~~~~~~~f~~~L~~i~~~~~ 246 (840)
. ....+ .+..++|+.+|+++.+. ++.. .|+.+++ .|++.|..+.+.|+
T Consensus 109 ~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~------~ll~~L~~~~e~~~ 171 (178)
T 2ec4_A 109 TMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVD------ELMMRLMAAMEIFT 171 (178)
T ss_dssp HHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHH------HHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHH------HHHHHHHHHHHHhh
Confidence 1 11111 37889999999998853 3332 2455544 68888877777666
No 27
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=99.17 E-value=1.2e-11 Score=115.53 Aligned_cols=91 Identities=11% Similarity=0.025 Sum_probs=72.2
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC--ccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER--PDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~--pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
.++++|+|+++||++|+.|+.+++++.++.+.+. .+..++||+++. +++...| ++.|+||+||++ +|+
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~--------~V~g~PT~i~f~-~G~ 87 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELAR--------PVTFTPTFVLMA-GDV 87 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSS--------CCCSSSEEEEEE-TTE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHC--------CCCCCCEEEEEE-CCE
Confidence 4689999999999999999999999988766664 566677777654 4555444 788999999999 999
Q ss_pred eeccc-cccCCCCCCCcccHHHHHHHHHHH
Q 003187 216 PLMGG-TYFPPEDKYGRPGFKTILRKVKDA 244 (840)
Q Consensus 216 ~~~~~-tY~p~~~~~~~~~f~~~L~~i~~~ 244 (840)
++... +|.+++ .|.+.|+++...
T Consensus 88 ev~Ri~G~~~~~------~f~~~L~~~l~~ 111 (116)
T 3dml_A 88 ESGRLEGYPGED------FFWPMLARLIGQ 111 (116)
T ss_dssp EEEEEECCCCHH------HHHHHHHHHHHH
T ss_pred EEeeecCCCCHH------HHHHHHHHHHhh
Confidence 98864 677765 688888877543
No 28
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.17 E-value=8.1e-11 Score=133.43 Aligned_cols=186 Identities=12% Similarity=0.091 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcCC------CCCCCc--------------chhhhcHHHHHHHHHHHHHHHhhhhhhhhc
Q 003187 503 MPLEKYLNILGECRRKLFDVRSKR------PRPHLD--------------DKVIVSWNGLVISSFARASKILKSEAESAM 562 (840)
Q Consensus 503 ~~~e~l~~~l~~~r~kL~~~R~~R------~~P~~D--------------dKiltsWNal~I~ALa~A~~~~~d~~~~~~ 562 (840)
++.+++++.++.+.+.|-..---| ....+| -......+|+|+.||+++|+++||
T Consensus 27 ~~~~~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Gv~l~gl~~ay~~Tgd------ 100 (445)
T 3k11_A 27 LTPEQVKKDIDRVFAYIDKETPARVVDKNTGKVITDYTAMGDEAQLERGAFRLASYEWGVTYSALIAAAETTGD------ 100 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCCCEEETTTCCEECCTTTCCTTEEECCCSSCTTSHHHHHHHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHHHHHHHHHhccCcceeecCCCCceeccccccccccccccCCcccCccCHHHHHHHHHHHHHHHCC------
Confidence 467888999998888887721111 111111 112223579999999999999998
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHhc------cccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHH
Q 003187 563 FNFPVVGSDRKEYMEVAESAASFIRRHL------YDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWL 636 (840)
Q Consensus 563 ~~~~~~~~~~~~yle~A~~~~~fl~~~l------~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL 636 (840)
++|++.|++.++||.+++ ++. +|++.+.++++ . ..++++||++++.+++++|++|++++|+
T Consensus 101 ----------~kY~~ya~~~~dfi~~~~p~~~~~~~~-~G~l~~~~r~~-~-~~~~LDD~g~~~~~Li~lY~~T~d~~yl 167 (445)
T 3k11_A 101 ----------KRYTDYVQNRFRFLAEVAPHFKRVYEE-KGKTDSQLLQI-L-TPHALDDAGAVCTAMIKLRLKDESLPVD 167 (445)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCHHHHHH-H-SCCSGGGTHHHHHHHHHHHHHCTTCCCH
T ss_pred ----------HHHHHHHHHHHHHHHhccchhhhhhhc-cCCeecccccc-c-CCCcchhHHHHHHHHHHHHHhcCCHHHH
Confidence 899999999999998754 343 57777767665 2 3789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHH
Q 003187 637 VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY--YRQNAEHSL 714 (840)
Q Consensus 637 ~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~--y~~~A~~~l 714 (840)
+.|.++++.+.++|.+.+.|+|+........+. .| +..+..-.|.+++.++|+ ++ |.+.|.+-+
T Consensus 168 ~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~W------iD-----~lyM~~pfla~~~~~tgd---~~~~y~d~A~~q~ 233 (445)
T 3k11_A 168 GLIQNYFDFIINKEYRLADGTFARNRPQRNTLW------LD-----DMFMGIPAVAQMSRYDKE---AKNKYLAEAVKQF 233 (445)
T ss_dssp HHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEE------TH-----HHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCceeecCCCCCceE------ec-----chhhHHHHHHHHHHHHCC---cchHHHHHHHHHH
Confidence 999999999999999888888886432111111 12 122455667789999986 67 888887766
Q ss_pred HHHHHHH
Q 003187 715 AVFETRL 721 (840)
Q Consensus 715 ~~~~~~i 721 (840)
..+...+
T Consensus 234 ~~~~~~l 240 (445)
T 3k11_A 234 LQFADRM 240 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666555
No 29
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=99.16 E-value=6.2e-11 Score=116.63 Aligned_cols=91 Identities=25% Similarity=0.427 Sum_probs=67.6
Q ss_pred CCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHH
Q 003187 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (840)
Q Consensus 118 ~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~ 197 (840)
...++|..+ +++++.+..++|||+|.|+++||++|+.|.. .|++-......+-.||.|.+|.++.+ +...|
T Consensus 27 ~~~i~w~~~-~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p-~l~~~~~~~~~~~~~~~v~~d~~~~~-~~~~~------ 97 (164)
T 1sen_A 27 GDHIHWRTL-EDGKKEAAASGLPLMVIIHKSWCGACKALKP-KFAESTEISELSHNFVMVNLEDEEEP-KDEDF------ 97 (164)
T ss_dssp CTTSCBCCH-HHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHHTCHHHHHHHTTSEEEEEEGGGSC-SCGGG------
T ss_pred cccccccCH-HHHHHHHHhcCCeEEEEEECCCCHHHHHHHH-HHHHHHHHhhcCCeEEEEEecCCchH-HHHHh------
Confidence 346999655 7999999999999999999999999999987 55542222223457888777765332 33333
Q ss_pred hcCC--CCCCcEEEECCCCceecc
Q 003187 198 LYGG--GGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 198 ~~g~--~G~P~~vfl~p~g~~~~~ 219 (840)
++ .++|+++|++++|+++..
T Consensus 98 --~~~~~~~Pt~~~~d~~G~~~~~ 119 (164)
T 1sen_A 98 --SPDGGYIPRILFLDPSGKVHPE 119 (164)
T ss_dssp --CTTCSCSSEEEEECTTSCBCTT
T ss_pred --cccCCcCCeEEEECCCCCEEEE
Confidence 44 569999999999998864
No 30
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=99.15 E-value=7.6e-11 Score=106.60 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=70.7
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003187 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (840)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g 200 (840)
|.+....+++++.+++++||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| +
T Consensus 7 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~ 75 (112)
T 1ep7_A 7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPL-F--ETLSNDYAGKVIFLKVDVDAVAAVAEAA--------G 75 (112)
T ss_dssp ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTSEEEEEETTTTHHHHHHH--------T
T ss_pred ecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHcCCCeEEEEEECCchHHHHHHc--------C
Confidence 344444577888777789999999999999999999874 3 4567767668999999999988887776 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003187 201 GGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 201 ~~G~P~~vfl~p~g~~~~~ 219 (840)
+.++|+++|+ ++|+++..
T Consensus 76 v~~~Pt~~~~-~~G~~~~~ 93 (112)
T 1ep7_A 76 ITAMPTFHVY-KDGVKADD 93 (112)
T ss_dssp CCBSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-ECCeEEEE
Confidence 9999998777 79998754
No 31
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=99.10 E-value=1.8e-10 Score=104.05 Aligned_cols=103 Identities=21% Similarity=0.215 Sum_probs=77.2
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003187 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (840)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g 200 (840)
|.+....++.++.|+.++|+++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| +
T Consensus 9 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~ 76 (113)
T 1ti3_A 9 CHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPI-F--AELAKKFP-NVTFLKVDVDELKAVAEEW--------N 76 (113)
T ss_dssp ECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHH-H--HHHHHHCS-SEEEEEEETTTCHHHHHHH--------H
T ss_pred eccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHhCC-CcEEEEEEccccHHHHHhC--------C
Confidence 444445588888888899999999999999999999863 2 34454443 7999999999888887766 7
Q ss_pred CCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 201 GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 201 ~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
+.++|+++|+ .+|+++.......+ ..+.+.|+++.
T Consensus 77 v~~~Pt~~~~-~~G~~~~~~~g~~~------~~l~~~l~~~~ 111 (113)
T 1ti3_A 77 VEAMPTFIFL-KDGKLVDKTVGADK------DGLPTLVAKHA 111 (113)
T ss_dssp CSSTTEEEEE-ETTEEEEEEECCCT------THHHHHHHHHH
T ss_pred CCcccEEEEE-eCCEEEEEEecCCH------HHHHHHHHHhh
Confidence 8899999988 68998764322232 25666666553
No 32
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=99.10 E-value=2.6e-10 Score=102.75 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=69.9
Q ss_pred ccchHHHHHHHH-hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003187 124 FAWGEEAFAEAR-KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (840)
Q Consensus 124 ~~~~~eAl~~Ak-~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~ 202 (840)
.....+.++.+. +++|+++|.|+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| ++.
T Consensus 7 ~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~ 75 (111)
T 3gnj_A 7 EKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEEEKTLFQRF--------SLK 75 (111)
T ss_dssp EECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHT--------TCC
T ss_pred eecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCcChhHHHhc--------CCC
Confidence 344567777776 8899999999999999999998743 6777777767999999999998877666 899
Q ss_pred CCCcEEEECCCCceecc
Q 003187 203 GWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~ 219 (840)
++|+++|+ .+|+++..
T Consensus 76 ~~Pt~~~~-~~g~~~~~ 91 (111)
T 3gnj_A 76 GVPQILYF-KDGEYKGK 91 (111)
T ss_dssp SSCEEEEE-ETTEEEEE
T ss_pred cCCEEEEE-ECCEEEEE
Confidence 99999999 78888754
No 33
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=99.09 E-value=1.4e-10 Score=106.00 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
++.++. ..+|||+|+|+++||+.|+.|.... .++++.. .+++.++||.++.|++.+.| ++.|+||+
T Consensus 12 ~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~~---~~~~~~~-~~~~~~~vd~d~~~~l~~~~--------~V~~~PT~ 77 (105)
T 3zzx_A 12 TKQLNE--AGNKLVVIDFYATWCGPCKMIAPKL---EELSQSM-SDVVFLKVDVDECEDIAQDN--------QIACMPTF 77 (105)
T ss_dssp HHHHHH--TTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTEEEEEEETTTCHHHHHHT--------TCCBSSEE
T ss_pred HHHHHh--cCCCEEEEEEECCCCCCccCCCcch---hhhhhcc-CCeEEEEEecccCHHHHHHc--------CCCeecEE
Confidence 444443 3489999999999999999998633 3455554 47899999999999988777 89999998
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+|+ .+|+++..
T Consensus 78 ~~~-~~G~~v~~ 88 (105)
T 3zzx_A 78 LFM-KNGQKLDS 88 (105)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-ECCEEEEE
Confidence 888 68998865
No 34
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.09 E-value=7.9e-11 Score=109.41 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=63.8
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc--CCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD--REERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD--~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl 210 (840)
.+..++|+++|.|+++||++|+.|.... .++++.+..++..++|| .++.+++.+.| ++.|+|+++|+
T Consensus 21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~--------~v~~~Pt~~~~ 89 (126)
T 2l57_A 21 EEAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKY--------DANIVPTTVFL 89 (126)
T ss_dssp TTCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHT--------TCCSSSEEEEE
T ss_pred HHHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHc--------CCcceeEEEEE
Confidence 4567899999999999999999998744 56777776789999999 77666665554 89999999999
Q ss_pred CCCCceecc
Q 003187 211 SPDLKPLMG 219 (840)
Q Consensus 211 ~p~g~~~~~ 219 (840)
+++|+++..
T Consensus 90 ~~~G~~~~~ 98 (126)
T 2l57_A 90 DKEGNKFYV 98 (126)
T ss_dssp CTTCCEEEE
T ss_pred CCCCCEEEE
Confidence 999998764
No 35
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=99.08 E-value=1.9e-10 Score=108.87 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=65.4
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
.+|||+|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.|+|+++|++++|++
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~~~~g~~ 118 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDKEPELARDF--------GIQSIPTIWFVPMKGEP 118 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEECSSSCC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCCCHHHHHHc--------CCCCcCEEEEEeCCCCE
Confidence 489999999999999999998744 7777778778999999999998887766 89999999999999998
Q ss_pred eccccccC
Q 003187 217 LMGGTYFP 224 (840)
Q Consensus 217 ~~~~tY~p 224 (840)
+...++.+
T Consensus 119 ~~~~G~~~ 126 (141)
T 3hxs_A 119 QVNMGALS 126 (141)
T ss_dssp EEEESCCC
T ss_pred EEEeCCCC
Confidence 74444444
No 36
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=99.08 E-value=2e-10 Score=104.44 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=66.2
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
..+-|+++.+++|+|+|.|+++||++|+.|.... .++++.+. ++..++||.++.+++.+.| ++.++|+
T Consensus 13 ~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l---~~l~~~~~-~~~~~~vd~~~~~~l~~~~--------~v~~~Pt 80 (109)
T 3f3q_A 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMI---EKFSEQYP-QADFYKLDVDELGDVAQKN--------EVSAMPT 80 (109)
T ss_dssp SHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred CHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHH---HHHHHHCC-CCEEEEEECCCCHHHHHHc--------CCCccCE
Confidence 3677888989999999999999999999998633 44555443 5888999999988877666 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|++ +|+++..
T Consensus 81 ~~~~~-~G~~~~~ 92 (109)
T 3f3q_A 81 LLLFK-NGKEVAK 92 (109)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEEE-CCEEEEE
Confidence 99998 8988765
No 37
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=99.08 E-value=4.5e-09 Score=116.99 Aligned_cols=257 Identities=12% Similarity=0.087 Sum_probs=174.8
Q ss_pred CChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHH
Q 003187 310 PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVY 389 (840)
Q Consensus 310 P~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~y 389 (840)
+....+.-|+..+..++ +++.++.+....+.+.. . +|... |..+ + | |+-.+..++
T Consensus 42 ~~G~~~~gl~~~y~~tg-------d~~y~~~a~~~~~~~~~-----~-~g~l~-~~~~------~----l-Dd~~~g~~l 96 (373)
T 1nc5_A 42 HQGVFLCGVLRLWEATG-------EKRYFEYAKAYADLLID-----D-NGNLL-FRRD------E----L-DAIQAGLIL 96 (373)
T ss_dssp HHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHBC-----T-TCCBC-CCTT------C----G-GGTGGGGGH
T ss_pred hHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHhC-----C-CCccc-CCCC------C----c-chHHHHHHH
Confidence 44555666777776654 57899999999888642 1 23222 2211 1 2 333367789
Q ss_pred HHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCC
Q 003187 390 LDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGN 469 (840)
Q Consensus 390 a~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn 469 (840)
++.|++|+|+.|++.|.+..++|......++|||+...+ +
T Consensus 97 l~lY~~Tgd~~yl~~a~~la~~l~~~~r~~~G~fw~~~~----------------------------------------~ 136 (373)
T 1nc5_A 97 FPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDG----------------------------------------Y 136 (373)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTT----------------------------------------S
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhccCCCCCCeeccCC----------------------------------------C
Confidence 999999999999999999999997755455677754210 0
Q ss_pred cCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHH
Q 003187 470 CDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFAR 549 (840)
Q Consensus 470 ~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~ 549 (840)
..+ ...|. ..+.+..|++
T Consensus 137 -------------~~~-------------------------------------------~w~D~------l~m~~p~L~~ 154 (373)
T 1nc5_A 137 -------------PYQ-------------------------------------------MWLDG------LYMGGPFALK 154 (373)
T ss_dssp -------------TTE-------------------------------------------EETHH------HHHHHHHHHH
T ss_pred -------------CCe-------------------------------------------EEeCc------HHHHHHHHHH
Confidence 000 01121 1355778999
Q ss_pred HHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC-CCC-------CC--CCCcchHHHH
Q 003187 550 ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPS-------KA--PGFLDDYAFL 619 (840)
Q Consensus 550 A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~-g~~-------~~--~~~leDyA~~ 619 (840)
+++++|+ ++|++.|.+.+....++++|+++|.++|.+.. +.. .. ....-.++++
T Consensus 155 l~~~tgd----------------~~y~d~A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~WaRg~gW~ 218 (373)
T 1nc5_A 155 YANLKQE----------------TELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWY 218 (373)
T ss_dssp HHHHHTC----------------THHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHH
T ss_pred HHHHHCC----------------HHHHHHHHHHHHHHHHHhcCCCCCCEEeecCCccccccccccCCCCCCcccchHhHH
Confidence 9999998 79999999999999999999999988887643 211 01 1122377899
Q ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHH
Q 003187 620 ISGLLDLYEF-----GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 694 (840)
Q Consensus 620 i~aLl~LYea-----Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL 694 (840)
+.|+.++|+. ++++.|++.++++++.+.++. +++.|.|.. --+++.... .-.+-|+.++++-.|+++
T Consensus 219 ~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q-~~~dG~W~~-~ld~~~~~~------~~~EsSatA~~ay~l~~g 290 (373)
T 1nc5_A 219 VMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQ-DKETGLWYQ-IVDKGDRSD------NWLESSGSCLYMYAIAKG 290 (373)
T ss_dssp HHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTS-CTTTSCCBS-BTTCTTSTT------CCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhc-CCCCCceee-ecCCCCCCC------CCccccHHHHHHHHHHHH
Confidence 9999999998 688899999999999998765 654564332 111111000 012348888899999988
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHH
Q 003187 695 ASIVAGSKSDYYRQNAEHSLAVFET 719 (840)
Q Consensus 695 ~~lt~~~~~~~y~~~A~~~l~~~~~ 719 (840)
.+.--- ++.|+..|+++++.+..
T Consensus 291 ~~~g~l--~~~Y~~~a~k~~~~l~~ 313 (373)
T 1nc5_A 291 INKGYL--DRAYETTLLKAYQGLIQ 313 (373)
T ss_dssp HHHTSS--CGGGHHHHHHHHHHHHH
T ss_pred HHCCCC--cHHHHHHHHHHHHHHHH
Confidence 655211 25799999998888755
No 38
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=99.08 E-value=7.1e-11 Score=105.56 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
+.++.+.+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| |+.++|+++
T Consensus 8 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 76 (105)
T 1nsw_A 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHADKVTVAKLNVDENPETTSQF--------GIMSIPTLI 76 (105)
T ss_dssp TTHHHHHSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHSTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HhHHHHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECcCCHHHHHHc--------CCccccEEE
Confidence 45667778899999999999999999998743 5677777667999999999888877665 899999999
Q ss_pred EECCCCceecc
Q 003187 209 FLSPDLKPLMG 219 (840)
Q Consensus 209 fl~p~g~~~~~ 219 (840)
++ ++|+++..
T Consensus 77 ~~-~~G~~~~~ 86 (105)
T 1nsw_A 77 LF-KGGRPVKQ 86 (105)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCeEEEE
Confidence 99 89998764
No 39
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=99.07 E-value=5.7e-10 Score=124.26 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=112.2
Q ss_pred hhcH---HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCC
Q 003187 536 IVSW---NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGF 612 (840)
Q Consensus 536 ltsW---Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~ 612 (840)
-++| ||+++.+|.++|++++| ++|++.|++.++++. ++ +|++. ++.|.
T Consensus 36 ~~~W~w~~G~~~~gl~~~y~~tgd----------------~~y~~~a~~~~~~~~----~~-~g~l~--~~~~~------ 86 (373)
T 1nc5_A 36 ANRWHYHQGVFLCGVLRLWEATGE----------------KRYFEYAKAYADLLI----DD-NGNLL--FRRDE------ 86 (373)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHB----CT-TCCBC--CCTTC------
T ss_pred CCCcchhHHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHh----CC-CCccc--CCCCC------
Confidence 5789 99999999999999998 899999999999874 32 35543 44432
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 003187 613 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 692 (840)
Q Consensus 613 leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~Ll 692 (840)
++||+ ++.++++||++|+|++|++.|+++.+.+.++| +.+.|+|+.+..... +...|+ ..+++..|.
T Consensus 87 lDd~~-~g~~ll~lY~~Tgd~~yl~~a~~la~~l~~~~-r~~~G~fw~~~~~~~------~~w~D~-----l~m~~p~L~ 153 (373)
T 1nc5_A 87 LDAIQ-AGLILFPLYEQTKDERYVKAAKRLRSLYGTLN-RTSEGGFWHKDGYPY------QMWLDG-----LYMGGPFAL 153 (373)
T ss_dssp GGGTG-GGGGHHHHHHHHCCHHHHHHHHHHHGGGGTSC-BCTTSCBCSCTTSTT------EEETHH-----HHHHHHHHH
T ss_pred cchHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-CCCCCCeeccCCCCC------eEEeCc-----HHHHHHHHH
Confidence 88998 67899999999999999999999999998777 666788876532211 111222 225677899
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003187 693 RLASIVAGSKSDYYRQNAEHSLAVFETRLK 722 (840)
Q Consensus 693 rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~ 722 (840)
+++++||+ ++|.+.|.+.+..+...+.
T Consensus 154 ~l~~~tgd---~~y~d~A~~~~~~~~~~l~ 180 (373)
T 1nc5_A 154 KYANLKQE---TELFDQVVLQESLMRKHTK 180 (373)
T ss_dssp HHHHHHTC---THHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHCC---HHHHHHHHHHHHHHHHHhc
Confidence 99999996 7899999999999988874
No 40
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=99.07 E-value=4.4e-09 Score=117.52 Aligned_cols=249 Identities=15% Similarity=0.123 Sum_probs=172.1
Q ss_pred hHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH
Q 003187 313 VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDA 392 (840)
Q Consensus 313 ~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~A 392 (840)
..+.-|+..+..++ +++.++.+..-.+.+... ||-- +.+| |.+. ..++.+.
T Consensus 72 ~~~~gl~~~ye~Tg-------d~~y~~~a~~~~~~~~~~-------~~~~-~n~D-------------~~~~-~~~l~~l 122 (382)
T 3pmm_A 72 VGLYGIYQYYQQTG-------DIEMRDIIDRWFADRFAE-------GATT-KNVN-------------TMAP-FLTLAYR 122 (382)
T ss_dssp HHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH-------CCCC-CCTT-------------TTTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHcC-------CCCc-Cccc-------------chHH-HHHHHHH
Confidence 44566667776654 578899888877766431 1100 0111 1122 2367999
Q ss_pred HHccCChHHHHHHHHHHHHHHHhc-cCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcC
Q 003187 393 FSLTKDVFYSYICRDILDYLRRDM-IGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCD 471 (840)
Q Consensus 393 y~~tgd~~y~~~A~~t~~fl~r~m-~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~ 471 (840)
|++|+|+.|++.|....++|.+.+ +.++|||+..... .. +
T Consensus 123 Y~~Tgd~~Yl~~a~~~ad~L~~~~~r~~~Ggf~~~~~~-~~------------------------------------~-- 163 (382)
T 3pmm_A 123 FEETGRMAYLPWLESWAEWAMHEMPRTEQGGMQHMTLA-EE------------------------------------N-- 163 (382)
T ss_dssp HHHHCCGGGHHHHHHHHHHHHHTSCBCGGGCBCCCCSS-CC------------------------------------C--
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCCCCcCCCeeeecCC-CC------------------------------------C--
Confidence 999999999999999999997655 3456888653100 00 0
Q ss_pred CCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHH
Q 003187 472 LSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARAS 551 (840)
Q Consensus 472 ~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~ 551 (840)
.+-+ .+| -..|.+-.|++++
T Consensus 164 -------------~~~~-----------------------------------------WiD------gl~M~~p~La~~~ 183 (382)
T 3pmm_A 164 -------------HQQM-----------------------------------------WDD------TLMMTVLPLAKIG 183 (382)
T ss_dssp -------------TTEE-----------------------------------------ETT------HHHHTHHHHHHHH
T ss_pred -------------CCcE-----------------------------------------Eec------chhhhHHHHHHHH
Confidence 0000 112 1245577899999
Q ss_pred HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeec-CCCC--CCCCCcchHHHHHHHHHHHHH
Q 003187 552 KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPS--KAPGFLDDYAFLISGLLDLYE 628 (840)
Q Consensus 552 ~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~-~g~~--~~~~~leDyA~~i~aLl~LYe 628 (840)
+++|+ ++|++.|.+-+....++++|+++|.++|.+. .|.. ......-.+++++.|+.+.++
T Consensus 184 ~~tgd----------------~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~ 247 (382)
T 3pmm_A 184 KLLNR----------------PQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLE 247 (382)
T ss_dssp HHTTC----------------HHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHH
T ss_pred HHHCC----------------HHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHH
Confidence 99998 8999999999999999999999999999864 3332 122334488999999999999
Q ss_pred H-------cCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHH--HhC
Q 003187 629 F-------GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLAS--IVA 699 (840)
Q Consensus 629 a-------Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~--lt~ 699 (840)
. ++++++++.++++++.+.++- + ++|.|+... +++. ...+-|+.++++-.|++..+ +.+
T Consensus 248 ~l~~p~~~~~~~~~~~~~~~~a~~~~~~q-~-~~G~W~~~~-d~~~---------~y~EsSatA~~ay~ll~~~~~g~l~ 315 (382)
T 3pmm_A 248 LVDLPEGNAVRRYLITVLDAQIAALAECQ-D-DSGLWHTLL-DDPH---------SYLEASATAGFAYGILKAVRKRYVG 315 (382)
T ss_dssp HHCCCTTCHHHHHHHHHHHHHHHHHHHHC-C-TTSCEESBT-TCTT---------SCEEHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhcCCcchhhHHHHHHHHHHHHHHHHHcC-C-CCCChhhcc-CCCC---------CCccccHHHHHHHHHHHHHHcCCCc
Confidence 8 667889999999999998864 5 355444322 2221 11245888999999999888 332
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q 003187 700 GSKSDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 700 ~~~~~~y~~~A~~~l~~~~~~i 721 (840)
+.|+..|+++++.+...+
T Consensus 316 ----~~Y~~~a~ka~~~l~~~i 333 (382)
T 3pmm_A 316 ----QHYAGVAEKAIRGIVQNI 333 (382)
T ss_dssp ----GGGHHHHHHHHHHHHHTB
T ss_pred ----HHHHHHHHHHHHHHHhhC
Confidence 679999999999887654
No 41
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=99.07 E-value=3.1e-10 Score=107.33 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=62.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
+.+||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++|++++|+
T Consensus 36 ~~~k~~lv~f~a~wC~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~G~ 104 (136)
T 2l5l_A 36 EGDKPAIVDFYADWCGPCKMVAPI-L--DELAKEYDGQIVIYKVDTEKEQELAGAF--------GIRSIPSILFIPMEGK 104 (136)
T ss_dssp CCSSCEEEEEECTTSHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSCEEEEECSSSC
T ss_pred cCCCEEEEEEECCcCHHHHHHHHH-H--HHHHHHhcCCEEEEEEeCCCCHHHHHHc--------CCCCCCEEEEECCCCc
Confidence 368999999999999999999874 3 5677777778999999999888777666 8999999999999999
Q ss_pred eec
Q 003187 216 PLM 218 (840)
Q Consensus 216 ~~~ 218 (840)
++.
T Consensus 105 ~~~ 107 (136)
T 2l5l_A 105 PEM 107 (136)
T ss_dssp CEE
T ss_pred EEE
Confidence 873
No 42
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.06 E-value=1.7e-10 Score=103.31 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
+.++.+.+++||++|.|+++||++|+.|... + .++++.+..++..+.||.++.+++.+.| ++.++|+++
T Consensus 12 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~~ 80 (109)
T 3tco_A 12 ENFDEVIRNNKLVLVDCWAEWCAPCHLYEPI-Y--KKVAEKYKGKAVFGRLNVDENQKIADKY--------SVLNIPTTL 80 (109)
T ss_dssp TTHHHHHHHSSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTSEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHhhhHH-H--HHHHHHhCCCceEEEEccccCHHHHHhc--------CcccCCEEE
Confidence 4556666679999999999999999999863 2 4566666668999999999998887766 899999999
Q ss_pred EECCCCceecc
Q 003187 209 FLSPDLKPLMG 219 (840)
Q Consensus 209 fl~p~g~~~~~ 219 (840)
|+ .+|+++..
T Consensus 81 ~~-~~g~~~~~ 90 (109)
T 3tco_A 81 IF-VNGQLVDS 90 (109)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-cCCcEEEe
Confidence 99 99998765
No 43
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=99.06 E-value=4.4e-10 Score=100.68 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=67.4
Q ss_pred HHHHHH-HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~-Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
++.+.. ..+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| |+.++|+
T Consensus 8 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt 76 (107)
T 1dby_A 8 DDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDESPNVASEY--------GIRSIPT 76 (107)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHH--------TCCSSCE
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHHC--------CCCcCCE
Confidence 344544 467899999999999999999998743 5677777767999999999988887766 8999999
Q ss_pred EEEECCCCceeccc-cccC
Q 003187 207 SVFLSPDLKPLMGG-TYFP 224 (840)
Q Consensus 207 ~vfl~p~g~~~~~~-tY~p 224 (840)
++++ ++|+++... ++.+
T Consensus 77 ~~~~-~~G~~~~~~~G~~~ 94 (107)
T 1dby_A 77 IMVF-KGGKKCETIIGAVP 94 (107)
T ss_dssp EEEE-SSSSEEEEEESCCC
T ss_pred EEEE-eCCEEEEEEeCCCC
Confidence 8888 799987642 3444
No 44
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=99.06 E-value=2.8e-10 Score=104.81 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=61.7
Q ss_pred HHHHHHHHh--cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 128 EEAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 128 ~eAl~~Ak~--e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
.+-|+++.+ ++|+|+|.|+++||++|+.|.... .++++.+. ++..++||.++.+++.+.| ++.++|
T Consensus 19 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~vd~d~~~~l~~~~--------~v~~~P 86 (116)
T 3qfa_C 19 KTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFF---HSLSEKYS-NVIFLEVDVDDCQDVASEC--------EVKSMP 86 (116)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHH---HHHHTTCT-TSEEEEEETTTTHHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHCC-CCEEEEEECCCCHHHHHHc--------CCcccc
Confidence 444555444 799999999999999999998632 33444443 4899999999998887766 899999
Q ss_pred cEEEECCCCceecc
Q 003187 206 LSVFLSPDLKPLMG 219 (840)
Q Consensus 206 ~~vfl~p~g~~~~~ 219 (840)
+++|+ .+|+++..
T Consensus 87 t~~~~-~~G~~~~~ 99 (116)
T 3qfa_C 87 TFQFF-KKGQKVGE 99 (116)
T ss_dssp EEEEE-SSSSEEEE
T ss_pred EEEEE-eCCeEEEE
Confidence 99999 78988764
No 45
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=99.06 E-value=2.5e-10 Score=106.59 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=69.3
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003187 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (840)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g 200 (840)
|......+++++.|+.++|+++|.|+++||++|+.|... | .++++.+. ++..++||.++.+++.+.| +
T Consensus 21 l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~-l--~~l~~~~~-~v~~~~vd~d~~~~l~~~~--------~ 88 (124)
T 1xfl_A 21 CHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPF-F--ADLAKKLP-NVLFLKVDTDELKSVASDW--------A 88 (124)
T ss_dssp ESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHH-H--HHHHHHCS-SEEEEEEETTTSHHHHHHT--------T
T ss_pred eCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CcEEEEEECccCHHHHHHc--------C
Confidence 334444588899998899999999999999999999863 3 34555443 7999999999888877666 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003187 201 GGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 201 ~~G~P~~vfl~p~g~~~~~ 219 (840)
+.++|+++|+ ++|+++..
T Consensus 89 v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1xfl_A 89 IQAMPTFMFL-KEGKILDK 106 (124)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCccCEEEEE-ECCEEEEE
Confidence 9999998887 89998764
No 46
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=99.04 E-value=3.2e-10 Score=103.22 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=68.8
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003187 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (840)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g 200 (840)
|.+....+++++.|+.++||++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| +
T Consensus 11 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~--------~ 78 (118)
T 2vm1_A 11 CHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPV-F--AEYAKKFP-GAIFLKVDVDELKDVAEAY--------N 78 (118)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTTSHHHHHHT--------T
T ss_pred ecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHH-H--HHHHHHCC-CcEEEEEEcccCHHHHHHc--------C
Confidence 445555688999999999999999999999999999853 2 34444443 7899999999888777665 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003187 201 GGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 201 ~~G~P~~vfl~p~g~~~~~ 219 (840)
+.++|+++|+ ++|+++..
T Consensus 79 v~~~Pt~~~~-~~g~~~~~ 96 (118)
T 2vm1_A 79 VEAMPTFLFI-KDGEKVDS 96 (118)
T ss_dssp CCSBSEEEEE-ETTEEEEE
T ss_pred CCcCcEEEEE-eCCeEEEE
Confidence 8999999888 78998754
No 47
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=99.03 E-value=2.6e-10 Score=103.94 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=65.6
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
.++++. .+|+++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|
T Consensus 10 ~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 77 (112)
T 2voc_A 10 SFSAET-SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMGDKLKIVKIDVDENQETAGKY--------GVMSIPTLLV 77 (112)
T ss_dssp THHHHH-SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHTTTCEEEEEETTTCCSHHHHT--------TCCSBSEEEE
T ss_pred HHHHHh-CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCcEEEEEECCCCHHHHHHc--------CCCcccEEEE
Confidence 344444 899999999999999999998754 6778888778999999999999887766 8999999999
Q ss_pred ECCCCceecc
Q 003187 210 LSPDLKPLMG 219 (840)
Q Consensus 210 l~p~g~~~~~ 219 (840)
+ ++|+++..
T Consensus 78 ~-~~G~~~~~ 86 (112)
T 2voc_A 78 L-KDGEVVET 86 (112)
T ss_dssp E-ETTEEEEE
T ss_pred E-eCCEEEEE
Confidence 9 99998764
No 48
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=99.03 E-value=4e-10 Score=101.14 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=63.5
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
..+++||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.|+|+++|+ ++
T Consensus 16 ~~~~~~~~~v~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~ 83 (108)
T 2trx_A 16 VLKADGAILVDFWAEWCGPCKMIAPI-L--DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KN 83 (108)
T ss_dssp TTTCSSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTEEEEEEETTTCTTHHHHT--------TCCSSSEEEEE-ET
T ss_pred HHhcCCeEEEEEECCCCHhHHHHHHH-H--HHHHHHhCCCcEEEEEECCCCHHHHHHc--------CCcccCEEEEE-eC
Confidence 35789999999999999999999874 3 5677777778999999999999887766 89999999999 89
Q ss_pred Cceecc
Q 003187 214 LKPLMG 219 (840)
Q Consensus 214 g~~~~~ 219 (840)
|+++..
T Consensus 84 G~~~~~ 89 (108)
T 2trx_A 84 GEVAAT 89 (108)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 998754
No 49
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=99.02 E-value=5.4e-10 Score=103.12 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=64.8
Q ss_pred HHHHHH-HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~-Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
++-|.+ ..+.+||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 20 ~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt 88 (119)
T 1w4v_A 20 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPR-L--EKMVAKQHGKVVMAKVDIDDHTDLAIEY--------EVSAVPT 88 (119)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTSSEEEEEETTTTHHHHHHT--------TCCSSSE
T ss_pred hhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEeCCCCHHHHHHc--------CCCcccE
Confidence 344444 46789999999999999999999864 3 4566667668999999999888776665 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|+ ++|+++..
T Consensus 89 ~~~~-~~G~~~~~ 100 (119)
T 1w4v_A 89 VLAM-KNGDVVDK 100 (119)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCcEEEE
Confidence 9999 89998754
No 50
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=99.02 E-value=3.6e-10 Score=106.77 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=69.7
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003187 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (840)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g 200 (840)
|.+...+++++..+..++|+|+|.|+++||++|+.|... + .++++.+ .++..++||.++.+++.+.| |
T Consensus 29 i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~-l--~~l~~~~-~~v~~~~v~~~~~~~~~~~~--------~ 96 (139)
T 3d22_A 29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPY-Y--IELSENY-PSLMFLVIDVDELSDFSASW--------E 96 (139)
T ss_dssp ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHC-TTSEEEEEETTTSHHHHHHT--------T
T ss_pred eCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHC-CCCEEEEEeCcccHHHHHHc--------C
Confidence 444445588899998899999999999999999999863 2 3445444 36899999999888877666 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003187 201 GGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 201 ~~G~P~~vfl~p~g~~~~~ 219 (840)
+.|+|+++|+ ++|+++..
T Consensus 97 v~~~Pt~~~~-~~G~~~~~ 114 (139)
T 3d22_A 97 IKATPTFFFL-RDGQQVDK 114 (139)
T ss_dssp CCEESEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-cCCeEEEE
Confidence 9999999988 89998764
No 51
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=99.02 E-value=3.6e-10 Score=102.85 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=69.6
Q ss_pred cccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH
Q 003187 115 QHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY 194 (840)
Q Consensus 115 ~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~ 194 (840)
++.++|..+..-..+-|+++.+++|+++|.|+++||++|+.|.... .++++.+. ++..++||.++.+++.+.|
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~-~v~~~~vd~~~~~~~~~~~--- 75 (112)
T 1syr_A 3 HHHHHHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFY---EECSKTYT-KMVFIKVDVDEVSEVTEKE--- 75 (112)
T ss_dssp ------CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEETTTTHHHHHHT---
T ss_pred ccccceeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcC-CCEEEEEECCCCHHHHHHc---
Confidence 3455666666666788888888999999999999999999998643 45555543 6999999999888776665
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003187 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
++.++|+++|+ .+|+.+..
T Consensus 76 -----~v~~~Pt~~~~-~~G~~~~~ 94 (112)
T 1syr_A 76 -----NITSMPTFKVY-KNGSSVDT 94 (112)
T ss_dssp -----TCCSSSEEEEE-ETTEEEEE
T ss_pred -----CCCcccEEEEE-ECCcEEEE
Confidence 89999998777 58988754
No 52
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.00 E-value=9.6e-10 Score=102.31 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=62.4
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
..+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|++++
T Consensus 31 ~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~ 99 (130)
T 2dml_A 31 VIQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADKHQSLGGQY--------GVQGFPTIKIFGAN 99 (130)
T ss_dssp TTTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHH--------TCCSSSEEEEESSC
T ss_pred HhcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCCCHHHHHHc--------CCCccCEEEEEeCC
Confidence 446799999999999999999998754 6778777777999999999988877766 89999999999999
Q ss_pred Cce
Q 003187 214 LKP 216 (840)
Q Consensus 214 g~~ 216 (840)
|+.
T Consensus 100 ~~~ 102 (130)
T 2dml_A 100 KNK 102 (130)
T ss_dssp TTS
T ss_pred CCe
Confidence 873
No 53
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.00 E-value=8.2e-09 Score=117.06 Aligned_cols=269 Identities=13% Similarity=0.126 Sum_probs=188.2
Q ss_pred CCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCC-----CcccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003187 309 FPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGG-----IHDHVGGGFHRYSVDERWHVPHFEKMLYDQG 383 (840)
Q Consensus 309 FP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GG-----i~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA 383 (840)
+|+...+.-|++.+..++ +++.++.+....+.+..+- .+|.-|+-.+||.- +..|+ .|-|.|
T Consensus 82 y~~Gv~l~gl~~ay~~Tg-------d~kY~~ya~~~~dfi~~~~p~~~~~~~~~G~l~~~~r~---~~~~~---~LDD~g 148 (445)
T 3k11_A 82 YEWGVTYSALIAAAETTG-------DKRYTDYVQNRFRFLAEVAPHFKRVYEEKGKTDSQLLQ---ILTPH---ALDDAG 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH---HHSCC---SGGGTH
T ss_pred cCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHhccchhhhhhhccCCeeccccc---ccCCC---cchhHH
Confidence 566677777778777654 5788998888888766410 22432222233311 11244 477899
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHh
Q 003187 384 QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHY 462 (840)
Q Consensus 384 ~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~-~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y 462 (840)
.++.++.++|+.|+++.|++.|.+.++||.+.+. .++|||+... ..
T Consensus 149 ~~~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~---~~------------------------------ 195 (445)
T 3k11_A 149 AVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRLADGTFARNR---PQ------------------------------ 195 (445)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCS---SS------------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCCCceeecC---CC------------------------------
Confidence 9999999999999999999999999999999874 5568887531 00
Q ss_pred CccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHH
Q 003187 463 YLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL 542 (840)
Q Consensus 463 ~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal 542 (840)
. +.+ -+|. ..|
T Consensus 196 --------------------~--~q~-----------------------------------------WiD~------lyM 206 (445)
T 3k11_A 196 --------------------R--NTL-----------------------------------------WLDD------MFM 206 (445)
T ss_dssp --------------------T--TEE-----------------------------------------ETHH------HHH
T ss_pred --------------------C--Cce-----------------------------------------Eecc------hhh
Confidence 0 001 1121 135
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHH--HHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCC--CCcchHHH
Q 003187 543 VISSFARASKILKSEAESAMFNFPVVGSDRKE--YMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--GFLDDYAF 618 (840)
Q Consensus 543 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~--yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~--~~leDyA~ 618 (840)
.+--|+++++++++ ++ |++.|.+-+....++++|+++|.++|.+........ ...-.+++
T Consensus 207 ~~pfla~~~~~tgd----------------~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW 270 (445)
T 3k11_A 207 GIPAVAQMSRYDKE----------------AKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGW 270 (445)
T ss_dssp HHHHHHHHHHHCGG----------------GHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHH
T ss_pred HHHHHHHHHHHHCC----------------cchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchH
Confidence 57789999999998 67 999999999999999999999999998754321112 23347899
Q ss_pred HHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 003187 619 LISGLLDLYEF-----GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 693 (840)
Q Consensus 619 ~i~aLl~LYea-----Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~Llr 693 (840)
++.|++++++. ++...+++..+++++.+.++- ++ +|.|+... +++. ...+-|+.++++-.|++
T Consensus 271 ~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q-~~-~G~W~~vl-d~~~---------~y~EsSaTAmfaygllk 338 (445)
T 3k11_A 271 ALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQ-SG-EGFWHQLL-DCND---------SYLETSATAIYVYCLAH 338 (445)
T ss_dssp HHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTC-CT-TSCEESBT-TCTT---------SCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhC-CC-CCchhhcc-CCCC---------CCCCccHHHHHHHHHHH
Confidence 99999999997 667889999999999987654 54 55444322 2111 11345888899999988
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003187 694 LASIVAGSKSDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 694 L~~lt~~~~~~~y~~~A~~~l~~~~~~i 721 (840)
..+. |--+...|+..|+++++.+...+
T Consensus 339 gvr~-G~Ld~~~Y~~~A~ka~~~L~~~i 365 (445)
T 3k11_A 339 AINK-GWIDAIAYGPVAQLGWHAVAGKI 365 (445)
T ss_dssp HHHH-TSSCHHHHHHHHHHHHHHHHTTB
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 8775 22112479999999998876544
No 54
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=99.00 E-value=8.9e-11 Score=109.82 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+.++.+..++|+|+|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.|+|++
T Consensus 32 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~ 100 (128)
T 3ul3_B 32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDKNESLARKF--------SVKSLPTI 100 (128)
T ss_dssp CSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGGCHHHHHHT--------TCCSSSEE
T ss_pred ccHHHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCCcCEE
Confidence 334566678899999999999999999998754 6778888778999999999888877666 89999999
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+|+ .+|+++..
T Consensus 101 ~~~-~~G~~~~~ 111 (128)
T 3ul3_B 101 ILL-KNKTMLAR 111 (128)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-ECCEEEEE
Confidence 999 78988764
No 55
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=99.00 E-value=8.5e-10 Score=101.52 Aligned_cols=80 Identities=20% Similarity=0.225 Sum_probs=65.7
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.++.++.|++++||++|.|+++||++|+.|.. .|+ ++++.+. ++..++||.++.+++.+.| ++.|+|+
T Consensus 23 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~-~l~--~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 90 (122)
T 2vlu_A 23 WTMQIEEANTAKKLVVIDFTASWCGPCRIMAP-VFA--DLAKKFP-NAVFLKVDVDELKPIAEQF--------SVEAMPT 90 (122)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTCHHHHHHHH-HHH--HHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHhhccCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHCC-CcEEEEEECCCCHHHHHHc--------CCCcccE
Confidence 37788888889999999999999999999986 342 4555554 4899999999988877666 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|+ ++|+++..
T Consensus 91 ~~~~-~~G~~~~~ 102 (122)
T 2vlu_A 91 FLFM-KEGDVKDR 102 (122)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCEEEEE
Confidence 8877 79998753
No 56
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=98.99 E-value=3.4e-10 Score=101.06 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=65.4
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
.++.+.+++||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++|
T Consensus 10 ~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~ 78 (109)
T 2yzu_A 10 NFDETLGQHPLVLVDFWAEWCAPCRMIAPI-L--EEIAKEYEGKLLVAKLDVDENPKTAMRY--------RVMSIPTVIL 78 (109)
T ss_dssp THHHHHHHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTBTTBEEEEEETTTCHHHHHHT--------TCCSSSEEEE
T ss_pred HHHHHhcCCCeEEEEEECCCCHHHHHhhHH-H--HHHHHHhhCceEEEEEECCCCHhHHHhC--------CCCcCCEEEE
Confidence 445556789999999999999999999874 3 5677777768999999999888777665 8999999999
Q ss_pred ECCCCceecc
Q 003187 210 LSPDLKPLMG 219 (840)
Q Consensus 210 l~p~g~~~~~ 219 (840)
+ ++|+++..
T Consensus 79 ~-~~g~~~~~ 87 (109)
T 2yzu_A 79 F-KDGQPVEV 87 (109)
T ss_dssp E-ETTEEEEE
T ss_pred E-eCCcEeee
Confidence 9 89998764
No 57
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=98.99 E-value=4.6e-10 Score=109.93 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=59.6
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
+++|||+|+|+|+||+.|+.|+. +| .++++.+....+.+|||+|+.|++...| ++.+.||++|+- +|+
T Consensus 39 ~~~k~VVVdF~A~WCgPCk~m~P-vl--eelA~e~~~~v~f~kVDVDe~~e~a~~y--------~V~siPT~~fFk-~G~ 106 (160)
T 2av4_A 39 EDERLVCIRFGHDYDPDCMKMDE-LL--YKVADDIKNFCVIYLVDITEVPDFNTMY--------ELYDPVSVMFFY-RNK 106 (160)
T ss_dssp CSSSEEEEEEECTTSHHHHHHHH-HH--HHHHHHHTTTEEEEEEETTTCCTTTTTT--------TCCSSEEEEEEE-TTE
T ss_pred cCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHccCCcEEEEEECCCCHHHHHHc--------CCCCCCEEEEEE-CCE
Confidence 57899999999999999999986 44 4577777656889999999999999877 899999998775 566
Q ss_pred ee
Q 003187 216 PL 217 (840)
Q Consensus 216 ~~ 217 (840)
.+
T Consensus 107 ~v 108 (160)
T 2av4_A 107 HM 108 (160)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 58
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=98.99 E-value=6.6e-10 Score=99.20 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=63.6
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
.+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++++ ++|
T Consensus 17 ~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 84 (107)
T 2i4a_A 17 LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFAGKVTVAKVNIDDNPETPNAY--------QVRSIPTLMLV-RDG 84 (107)
T ss_dssp TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTSEEEEEEETTTCCHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhCCcEEEEEEECCCCHHHHHhc--------CCCccCEEEEE-eCC
Confidence 57899999999999999999998753 6778878778999999999988877666 89999999999 899
Q ss_pred ceecc
Q 003187 215 KPLMG 219 (840)
Q Consensus 215 ~~~~~ 219 (840)
+++..
T Consensus 85 ~~~~~ 89 (107)
T 2i4a_A 85 KVIDK 89 (107)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 59
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=98.98 E-value=4e-10 Score=104.61 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=69.1
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003187 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (840)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g 200 (840)
+......+++++.++.++||++|.|+++||++|+.|... | .++++.+. ++..++||.++.+++.+.| +
T Consensus 19 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~ 86 (130)
T 1wmj_A 19 CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPV-F--AEYAKKFP-GAVFLKVDVDELKEVAEKY--------N 86 (130)
T ss_dssp CSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHH-H--HHHHHHCT-TBCCEECCTTTSGGGHHHH--------T
T ss_pred cCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHH-H--HHHHHHCC-CCEEEEEeccchHHHHHHc--------C
Confidence 444444588999999999999999999999999999863 2 23444443 6888999999989888777 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003187 201 GGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 201 ~~G~P~~vfl~p~g~~~~~ 219 (840)
+.++|+++|+ ++|+++..
T Consensus 87 v~~~Pt~~~~-~~g~~~~~ 104 (130)
T 1wmj_A 87 VEAMPTFLFI-KDGAEADK 104 (130)
T ss_dssp CCSSCCCCBC-TTTTCCBC
T ss_pred CCccceEEEE-eCCeEEEE
Confidence 9999998887 89998754
No 60
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1e-09 Score=99.35 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=56.5
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l-n~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
..+||++|.|+++||++|+.|... + .++++.+ +.++..++||.++.+++.+.| ++.++|+++|+ .+|
T Consensus 19 ~~~~~~~v~f~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 86 (112)
T 3d6i_A 19 AGDKLIVLYFHTSWAEPCKALKQV-F--EAISNEPSNSNVSFLSIDADENSEISELF--------EISAVPYFIII-HKG 86 (112)
T ss_dssp TTTCCEEEEEECCC--CHHHHHHH-H--HHHHHCGGGTTSEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred cCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHhcCCCCEEEEEEecccCHHHHHHc--------CCCcccEEEEE-ECC
Confidence 459999999999999999999863 2 3455443 347999999999988877666 89999999988 699
Q ss_pred ceecc
Q 003187 215 KPLMG 219 (840)
Q Consensus 215 ~~~~~ 219 (840)
+++..
T Consensus 87 ~~~~~ 91 (112)
T 3d6i_A 87 TILKE 91 (112)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 61
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=98.97 E-value=1.3e-10 Score=108.65 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=56.4
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccC---C--------HHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFE---D--------EGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~---d--------~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~ 201 (840)
...+++|||+|.|+++||++|..|+.++|. . .++++.+..++..++||.++.+++.+.| |+
T Consensus 16 ~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~--------~v 87 (123)
T 1oaz_A 16 DVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY--------GI 87 (123)
T ss_dssp HTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGG--------TC
T ss_pred HHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHc--------CC
Confidence 346789999999999999954444444443 1 2345555557999999999999887766 89
Q ss_pred CCCCcEEEECCCCceecc
Q 003187 202 GGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 202 ~G~P~~vfl~p~g~~~~~ 219 (840)
.|+|+++|+ ++|+++..
T Consensus 88 ~~~Pt~~~~-~~G~~~~~ 104 (123)
T 1oaz_A 88 RGIPTLLLF-KNGEVAAT 104 (123)
T ss_dssp CBSSEEEEE-ESSSEEEE
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999999 99998754
No 62
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=98.97 E-value=2e-09 Score=102.40 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=68.1
Q ss_pred HHHHH-HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~-~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.+. ...+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 13 ~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 81 (140)
T 3hz4_A 13 DMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIATNPWTAEKY--------GVQGTPT 81 (140)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTTCHHHHHHH--------TCCEESE
T ss_pred hHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCcCHhHHHHC--------CCCcCCE
Confidence 44555 6778899999999999999999998744 7788888878999999999998887776 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|+ .+|+++..
T Consensus 82 ~~~~-~~G~~~~~ 93 (140)
T 3hz4_A 82 FKFF-CHGRPVWE 93 (140)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCcEEEE
Confidence 9888 78988754
No 63
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=98.97 E-value=1.5e-10 Score=104.19 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=54.2
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
.++++.+++|||+|.|+++||+.|+.|.... .++++.+ .++..++||.++.+++.+.| ++.++|+++|
T Consensus 10 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~-~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 77 (105)
T 4euy_A 10 ELATYIEEQQLVLLFIKTENCGVCDVMLRKV---NYVLENY-NYVEKIEILLQDMQEIAGRY--------AVFTGPTVLL 77 (105)
T ss_dssp CCSSSTTCSSEEEEEEEESSCHHHHHHHHHH---HHHHHTC-TTEEEEEEEECCC-----------------CCCCEEEE
T ss_pred HHHHHHhcCCCEEEEEeCCCCcchHHHHHHH---HHHHHHc-CCceEEEEECCCCHHHHHhc--------CCCCCCEEEE
Confidence 3444557899999999999999999997532 3444444 36899999999999888776 8899999999
Q ss_pred ECCCCceecc
Q 003187 210 LSPDLKPLMG 219 (840)
Q Consensus 210 l~p~g~~~~~ 219 (840)
+. +|+++..
T Consensus 78 ~~-~G~~~~~ 86 (105)
T 4euy_A 78 FY-NGKEILR 86 (105)
T ss_dssp EE-TTEEEEE
T ss_pred Ee-CCeEEEE
Confidence 95 8998764
No 64
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=98.96 E-value=9.6e-10 Score=97.78 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=61.9
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
..+.+||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++++ ++
T Consensus 14 ~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~ 81 (105)
T 1fb6_A 14 VLESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTDEAPGIATQY--------NIRSIPTVLFF-KN 81 (105)
T ss_dssp TTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ET
T ss_pred HhcCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhcCceEEEEEcCcchHHHHHhC--------CCCcccEEEEE-eC
Confidence 345699999999999999999998743 5677777777999999999888877665 89999998877 69
Q ss_pred Cceecc
Q 003187 214 LKPLMG 219 (840)
Q Consensus 214 g~~~~~ 219 (840)
|+++..
T Consensus 82 g~~~~~ 87 (105)
T 1fb6_A 82 GERKES 87 (105)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 998764
No 65
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=98.96 E-value=9.1e-10 Score=101.79 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=65.3
Q ss_pred HHHHH-HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~-~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.+. ..++++||++|.|+++||++|+.|.... .++++.+ .++..++||.++.+++.+.| ++.++|+
T Consensus 12 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~~~~~~~~--------~i~~~Pt 79 (118)
T 2f51_A 12 HEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN-KDVTFIKVDVDKNGNAADAY--------GVSSIPA 79 (118)
T ss_dssp HHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC-CCeEEEEEECCCCHHHHHhc--------CCCCCCE
Confidence 44454 5667899999999999999999998743 5667666 68999999999988877666 8999999
Q ss_pred EEEECC---CCceecc
Q 003187 207 SVFLSP---DLKPLMG 219 (840)
Q Consensus 207 ~vfl~p---~g~~~~~ 219 (840)
++|++. +|+++..
T Consensus 80 ~~~~~~~~~~G~~~~~ 95 (118)
T 2f51_A 80 LFFVKKEGNEIKTLDQ 95 (118)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCcceEEEe
Confidence 999977 4777754
No 66
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=98.96 E-value=6e-10 Score=99.30 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=64.9
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
+.++.+. ++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++
T Consensus 11 ~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 78 (106)
T 3die_A 11 ADFDSKV-ESGVQLVDFWATACGPCKMIAPVL---EELAADYEGKADILKLDVDENPSTAAKY--------EVMSIPTLI 78 (106)
T ss_dssp TTHHHHS-CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSBSEEE
T ss_pred HHHHHHh-cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCcCHHHHHhC--------CCcccCEEE
Confidence 3444554 899999999999999999998744 6777777767999999999998877666 899999999
Q ss_pred EECCCCceecc
Q 003187 209 FLSPDLKPLMG 219 (840)
Q Consensus 209 fl~p~g~~~~~ 219 (840)
|+. +|+++..
T Consensus 79 ~~~-~G~~~~~ 88 (106)
T 3die_A 79 VFK-DGQPVDK 88 (106)
T ss_dssp EEE-TTEEEEE
T ss_pred EEe-CCeEEEE
Confidence 995 8988764
No 67
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=98.96 E-value=8.7e-10 Score=101.43 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=65.3
Q ss_pred HHHH-HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAF-AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl-~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.+ +...+.+||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 10 ~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 78 (122)
T 3aps_A 10 PQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPE-F--ELLARMIKGKVRAGKVDCQAYPQTCQKA--------GIKAYPS 78 (122)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTCEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEeCcCCHHHHHHc--------CCCccce
Confidence 3445 5567889999999999999999999874 3 5677778778999999999988877665 8999999
Q ss_pred EEEECCCCce
Q 003187 207 SVFLSPDLKP 216 (840)
Q Consensus 207 ~vfl~p~g~~ 216 (840)
++|++++|+.
T Consensus 79 ~~~~~~~~~~ 88 (122)
T 3aps_A 79 VKLYQYERAK 88 (122)
T ss_dssp EEEEEEEGGG
T ss_pred EEEEeCCCcc
Confidence 9999888773
No 68
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=98.96 E-value=9.3e-10 Score=99.53 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=62.4
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003187 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~ 211 (840)
+...+++||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.|+|+++|+
T Consensus 17 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~- 84 (112)
T 1t00_A 17 QDVLKNDKPVLVDFWAAWCGPCRQIAPS-L--EAIAAEYGDKIEIVKLNIDENPGTAAKY--------GVMSIPTLNVY- 84 (112)
T ss_dssp HHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-
T ss_pred HHHhhCCCeEEEEEECCCCHhHHhcCHH-H--HHHHHHhcCCeEEEEEEcCCCHHHHHhC--------CCCcccEEEEE-
Confidence 3445679999999999999999999864 3 4677777667999999999888877665 89999998887
Q ss_pred CCCceecc
Q 003187 212 PDLKPLMG 219 (840)
Q Consensus 212 p~g~~~~~ 219 (840)
++|+++..
T Consensus 85 ~~G~~~~~ 92 (112)
T 1t00_A 85 QGGEVAKT 92 (112)
T ss_dssp ETTEEEEE
T ss_pred eCCEEEEE
Confidence 79998754
No 69
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=98.95 E-value=1.6e-09 Score=97.44 Aligned_cols=77 Identities=9% Similarity=0.058 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
+++++. +++||++|.|+++||++|+.|.... .++++.+ .++..++||.++.+++.+.| ++.++|++
T Consensus 13 ~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~~---~~~~~~~-~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~ 78 (107)
T 1gh2_A 13 QPELSG--AGSRLAVVKFTMRGCGPCLRIAPAF---SSMSNKY-PQAVFLEVDVHQCQGTAATN--------NISATPTF 78 (107)
T ss_dssp HHHHHH--TTTSCEEEEEECSSCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSSSEE
T ss_pred HHHHHh--CCCCEEEEEEECCCChhhHHHHHHH---HHHHHHC-CCcEEEEEECccCHHHHHhc--------CCCcccEE
Confidence 444433 5799999999999999999998633 3455555 47999999999888877665 89999999
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+|+ .+|+.+..
T Consensus 79 ~~~-~~G~~~~~ 89 (107)
T 1gh2_A 79 QFF-RNKVRIDQ 89 (107)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-ECCeEEEE
Confidence 988 78988754
No 70
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=98.95 E-value=1.4e-09 Score=96.86 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=58.2
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
++||++|.|+++||+.|+.|.... .++++.+. ++..++||.++.+++.+.| ++.++|+++|+ .+|+.
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~ 85 (105)
T 3m9j_A 19 GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS-NVIFLEVDVDDCQDVASES--------EVKSMPTFQFF-KKGQK 85 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TSEEEEEETTTCHHHHHHT--------TCCBSSEEEEE-ETTEE
T ss_pred CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc-CeEEEEEEhhhhHHHHHHc--------CCCcCcEEEEE-ECCeE
Confidence 699999999999999999998633 44555553 5899999999988877666 89999999999 78888
Q ss_pred ecc
Q 003187 217 LMG 219 (840)
Q Consensus 217 ~~~ 219 (840)
+..
T Consensus 86 ~~~ 88 (105)
T 3m9j_A 86 VGE 88 (105)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 71
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=8.8e-10 Score=103.90 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~ 204 (840)
.+.++++.+++|+++|.|+++||++|+.|.... .++++.+... ++.++||.++.+++.+.| ++.++
T Consensus 24 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~ 92 (140)
T 2dj1_A 24 DGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLKDNDPPIAVAKIDATSASMLASKF--------DVSGY 92 (140)
T ss_dssp TTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHHSSSSCCEEEEECTTTCHHHHHHT--------TCCSS
T ss_pred hHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCceEEEEEeCcccHHHHHHC--------CCCcc
Confidence 345556667799999999999999999998743 3566666654 999999999888776665 88999
Q ss_pred CcEEEECCCCce
Q 003187 205 PLSVFLSPDLKP 216 (840)
Q Consensus 205 P~~vfl~p~g~~ 216 (840)
|+++|+ .+|++
T Consensus 93 Pt~~~~-~~G~~ 103 (140)
T 2dj1_A 93 PTIKIL-KKGQA 103 (140)
T ss_dssp SEEEEE-ETTEE
T ss_pred CeEEEE-ECCcE
Confidence 999999 78884
No 72
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=98.94 E-value=1.1e-09 Score=106.10 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=62.9
Q ss_pred HHHHHHHH--hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 128 ~eAl~~Ak--~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
.+.++.+. +++|||+|+|+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|
T Consensus 11 ~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~~~~l~~~~--------~v~~~P 79 (149)
T 3gix_A 11 KKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDIL---SKTSSDLSKMAAIYLVDVDQTAVYTQYF--------DISYIP 79 (149)
T ss_dssp HHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHH---HHHHTTTTTTEEEEEEETTTCCHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCcCHHHHHHc--------CCCccC
Confidence 34555554 5699999999999999999998633 2455556556999999999999988776 899999
Q ss_pred cEEEECCCCcee
Q 003187 206 LSVFLSPDLKPL 217 (840)
Q Consensus 206 ~~vfl~p~g~~~ 217 (840)
+++ +..+|+++
T Consensus 80 t~~-~~~~G~~v 90 (149)
T 3gix_A 80 STV-FFFNGQHM 90 (149)
T ss_dssp EEE-EEETTEEE
T ss_pred eEE-EEECCeEE
Confidence 999 66789888
No 73
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=98.94 E-value=1e-09 Score=101.63 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.++++.+++|+++|.|+++||++|+.|.... .++++.+... +..++||.++.+++.+.| ++.++|+
T Consensus 23 ~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d~~~~~~~~~--------~v~~~Pt 91 (121)
T 2j23_A 23 YDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVDEQSQIAQEV--------GIRAMPT 91 (121)
T ss_dssp HHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETTTCHHHHHHH--------TCCSSSE
T ss_pred HHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECcCCHHHHHHc--------CCCcccE
Confidence 566777778999999999999999999998643 4455555443 999999999988877766 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|+ ++|+++..
T Consensus 92 ~~~~-~~G~~~~~ 103 (121)
T 2j23_A 92 FVFF-KNGQKIDT 103 (121)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-ECCeEEee
Confidence 9988 58988754
No 74
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=98.94 E-value=8.9e-10 Score=101.34 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=65.0
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
..+.++.+.+++|+++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| ++.++|+
T Consensus 19 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~~~~~~~-~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 86 (114)
T 2oe3_A 19 NLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPH-L--TKLIQAYP-DVRFVKCDVDESPDIAKEC--------EVTAMPT 86 (114)
T ss_dssp SHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHH-H--HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSBSE
T ss_pred CHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CCEEEEEECCCCHHHHHHC--------CCCcccE
Confidence 367788888899999999999999999999863 3 34555554 4889999999888877666 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|+ ++|+++..
T Consensus 87 ~~~~-~~G~~~~~ 98 (114)
T 2oe3_A 87 FVLG-KDGQLIGK 98 (114)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCeEEEE
Confidence 9887 89998753
No 75
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.93 E-value=8.8e-10 Score=103.59 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=62.9
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
.+.+|+++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|+ ++|
T Consensus 37 ~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G 104 (128)
T 2o8v_B 37 LKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNG 104 (128)
T ss_dssp TTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTTTTEEEEEEETTTCCTTSGGG--------TCCSSSEEEEE-ETT
T ss_pred HhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCccCEEEEE-eCC
Confidence 57899999999999999999998743 5677777768999999999988877666 89999999999 899
Q ss_pred ceecc
Q 003187 215 KPLMG 219 (840)
Q Consensus 215 ~~~~~ 219 (840)
+++..
T Consensus 105 ~~~~~ 109 (128)
T 2o8v_B 105 EVAAT 109 (128)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98754
No 76
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=98.93 E-value=1.9e-09 Score=104.89 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
++.|+.+.+.+||++|+|+++||+.|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|++
T Consensus 54 ~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~Pt~ 122 (155)
T 2ppt_A 54 PAILARAERDDLPLLVDFWAPWCGPCRQMAPQ-F--QAAAATLAGQVRLAKIDTQAHPAVAGRH--------RIQGIPAF 122 (155)
T ss_dssp HHHHHHHTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTCEEEEEETTTSTHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHHHHHH-H--HHHHHHccCCEEEEEEeCCccHHHHHHc--------CCCcCCEE
Confidence 56777776889999999999999999999874 4 5788888778999999999999887766 89999999
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+|+ .+|+++..
T Consensus 123 ~~~-~~G~~~~~ 133 (155)
T 2ppt_A 123 ILF-HKGRELAR 133 (155)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-eCCeEEEE
Confidence 999 79998754
No 77
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=98.93 E-value=1.8e-09 Score=103.22 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+.++.+.+++|||+|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.|+|++
T Consensus 45 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 113 (148)
T 3p2a_A 45 AETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERAGKVRFVKVNTEAEPALSTRF--------RIRSIPTI 113 (148)
T ss_dssp TTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcCCceEEEEEECcCCHHHHHHC--------CCCccCEE
Confidence 456666668999999999999999999998643 5677777778999999999999887766 89999999
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+|+ .+|+.+..
T Consensus 114 ~~~-~~G~~~~~ 124 (148)
T 3p2a_A 114 MLY-RNGKMIDM 124 (148)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-ECCeEEEE
Confidence 998 58988764
No 78
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=98.93 E-value=1.9e-09 Score=96.02 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=59.6
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
++||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++++ ++|+.
T Consensus 19 ~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~ 86 (106)
T 1xwb_A 19 SGKLVVLDFFATWCGPCKMISPK-L--VELSTQFADNVVVLKVDVDECEDIAMEY--------NISSMPTFVFL-KNGVK 86 (106)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEE
T ss_pred CCCEEEEEEECCcCHHHHHhhHH-H--HHHHHHhCCCeEEEEEeccchHHHHHHc--------CCCcccEEEEE-cCCcE
Confidence 79999999999999999999874 3 4577777668999999999888877665 89999998777 78988
Q ss_pred ecc
Q 003187 217 LMG 219 (840)
Q Consensus 217 ~~~ 219 (840)
+..
T Consensus 87 ~~~ 89 (106)
T 1xwb_A 87 VEE 89 (106)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 79
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=98.93 E-value=2.2e-09 Score=100.67 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
+.++.+.+++||++|.|+++||++|+.|... | .++++.+ .++..++||.++.+++.+.| ++.++|+++
T Consensus 28 ~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~l~~~~-~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~ 95 (125)
T 1r26_A 28 EQFRNIMSEDILTVAWFTAVWCGPCKTIERP-M--EKIAYEF-PTVKFAKVDADNNSEIVSKC--------RVLQLPTFI 95 (125)
T ss_dssp HHHHHHHHSSSCEEEEEECTTCHHHHHTHHH-H--HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HHHHHHHccCCEEEEEEECCcCHhHHHHHHH-H--HHHHHHC-CCCEEEEEECCCCHHHHHHc--------CCCcccEEE
Confidence 4455555789999999999999999999874 3 3455555 47999999999988877666 899999988
Q ss_pred EECCCCceecc
Q 003187 209 FLSPDLKPLMG 219 (840)
Q Consensus 209 fl~p~g~~~~~ 219 (840)
|+ .+|+++..
T Consensus 96 i~-~~G~~~~~ 105 (125)
T 1r26_A 96 IA-RSGKMLGH 105 (125)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCeEEEE
Confidence 87 89998754
No 80
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.8e-09 Score=99.19 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=62.1
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh----cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln----~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
..+.+|+++|.|+++||++|+.|.... .++++.+. .++..++||.++.+++.+.| ++.++|+++|
T Consensus 21 ~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 89 (133)
T 1x5d_A 21 VLDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATVNQVLASRY--------GIRGFPTIKI 89 (133)
T ss_dssp TTTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTTCCHHHHHH--------TCCSSSEEEE
T ss_pred HhcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCCCHHHHHhC--------CCCeeCeEEE
Confidence 356799999999999999999998744 56777776 68999999999998887777 8999999999
Q ss_pred ECCCCceec
Q 003187 210 LSPDLKPLM 218 (840)
Q Consensus 210 l~p~g~~~~ 218 (840)
+++ |+.+.
T Consensus 90 ~~~-g~~~~ 97 (133)
T 1x5d_A 90 FQK-GESPV 97 (133)
T ss_dssp EET-TEEEE
T ss_pred EeC-CCceE
Confidence 998 77554
No 81
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=98.92 E-value=1.2e-09 Score=96.53 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
+.++.+.+++|+++|.|+++||++|+.|... + .++++.+.. +..++||.++.+++.+.| ++.++|+++
T Consensus 7 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 74 (104)
T 2e0q_A 7 KNFDSFLASHEIAVVDFWAEWCAPCLILAPI-I--EELAEDYPQ-VGFGKLNSDENPDIAARY--------GVMSLPTVI 74 (104)
T ss_dssp TTHHHHHHHSSEEEEEEECTTCHHHHHHHHH-H--HHHHHHCTT-SEEEEEETTTCHHHHHHT--------TCCSSCEEE
T ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHhHH-H--HHHHHHcCC-ceEEEEECCCCHHHHHhC--------CccccCEEE
Confidence 3455555779999999999999999999863 3 346666654 899999999888776665 889999999
Q ss_pred EECCCCceecc
Q 003187 209 FLSPDLKPLMG 219 (840)
Q Consensus 209 fl~p~g~~~~~ 219 (840)
|+ ++|+++..
T Consensus 75 ~~-~~g~~~~~ 84 (104)
T 2e0q_A 75 FF-KDGEPVDE 84 (104)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-ECCeEhhh
Confidence 99 89998754
No 82
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=98.92 E-value=2e-09 Score=104.14 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=63.1
Q ss_pred HHHHHHHHhc--CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 128 EEAFAEARKR--DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 128 ~eAl~~Ak~e--~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
.+.++.+.++ +|+++|.|+++||++|+.|.... .++++.. .++..++||.++.+++.+.| ++.|+|
T Consensus 20 ~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l---~~l~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~P 87 (153)
T 2wz9_A 20 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVM---AELAKEL-PQVSFVKLEAEGVPEVSEKY--------EISSVP 87 (153)
T ss_dssp HHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHc-CCeEEEEEECCCCHHHHHHc--------CCCCCC
Confidence 4555555555 99999999999999999998632 3444443 47999999999988877666 899999
Q ss_pred cEEEECCCCceecc
Q 003187 206 LSVFLSPDLKPLMG 219 (840)
Q Consensus 206 ~~vfl~p~g~~~~~ 219 (840)
+++|++ +|+++..
T Consensus 88 t~~~~~-~G~~~~~ 100 (153)
T 2wz9_A 88 TFLFFK-NSQKIDR 100 (153)
T ss_dssp EEEEEE-TTEEEEE
T ss_pred EEEEEE-CCEEEEE
Confidence 999999 9998754
No 83
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=98.91 E-value=1.9e-09 Score=97.48 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=62.8
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
.+.+||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++|+ ++|
T Consensus 22 ~~~~~~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 89 (115)
T 1thx_A 22 LKAEQPVLVYFWASWCGPCQLMSPL-I--NLAANTYSDRLKVVKLEIDPNPTTVKKY--------KVEGVPALRLV-KGE 89 (115)
T ss_dssp TTCSSCEEEEEECTTCTTHHHHHHH-H--HHHHHHTTTTCEEEEEESTTCHHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred hcCCceEEEEEECCCCHHHHHhHHH-H--HHHHHHhCCcEEEEEEEcCCCHHHHHHc--------CCCceeEEEEE-cCC
Confidence 5789999999999999999999874 3 5777777767999999999888777665 89999999999 899
Q ss_pred ceecc
Q 003187 215 KPLMG 219 (840)
Q Consensus 215 ~~~~~ 219 (840)
+++..
T Consensus 90 ~~~~~ 94 (115)
T 1thx_A 90 QILDS 94 (115)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 84
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=98.89 E-value=3.9e-09 Score=93.64 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=61.1
Q ss_pred HHHHHHHh--cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 129 EAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 129 eAl~~Ak~--e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
+.++++.+ ++||++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| ++.++|+
T Consensus 8 ~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~--------~v~~~Pt 75 (104)
T 2vim_A 8 ADLEKLINENKGRLIVVDFFAQWCGPCRNIAPK-V--EALAKEIP-EVEFAKVDVDQNEEAAAKY--------SVTAMPT 75 (104)
T ss_dssp HHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHH-H--HHHHHHCC-CCEEEEEeccCCHHHHHHc--------CCccccE
Confidence 44555544 79999999999999999999863 3 34555543 7899999999888877665 8899999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++++. +|+++..
T Consensus 76 ~~~~~-~g~~~~~ 87 (104)
T 2vim_A 76 FVFIK-DGKEVDR 87 (104)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEEe-CCcEEEE
Confidence 88875 8988754
No 85
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.88 E-value=1.1e-09 Score=100.25 Aligned_cols=77 Identities=14% Similarity=0.246 Sum_probs=64.0
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003187 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (840)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl 210 (840)
.+.+.+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|+
T Consensus 23 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~~~~ 91 (121)
T 2i1u_A 23 ATDVLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERATDLTVAKLDVDTNPETARNF--------QVVSIPTLILF 91 (121)
T ss_dssp HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCCHHHHHhc--------CCCcCCEEEEE
Confidence 344567899999999999999999998753 6777777668999999999888877665 89999999888
Q ss_pred CCCCceecc
Q 003187 211 SPDLKPLMG 219 (840)
Q Consensus 211 ~p~g~~~~~ 219 (840)
++|+++..
T Consensus 92 -~~g~~~~~ 99 (121)
T 2i1u_A 92 -KDGQPVKR 99 (121)
T ss_dssp -ETTEEEEE
T ss_pred -ECCEEEEE
Confidence 48998754
No 86
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=98.88 E-value=3.4e-09 Score=97.00 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
++.++. ..+||++|.|+++||++|+.|.. .+.++.++ ++..++||.++.+++.+.| ++.++|+
T Consensus 25 ~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 88 (117)
T 2xc2_A 25 ESLLEQ--HKNKLVVVDFFATWCGPCKTIAP------LFKELSEKYDAIFVKVDVDKLEETARKY--------NISAMPT 88 (117)
T ss_dssp HHHHHH--TTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTSSSEEEEEETTTSHHHHHHT--------TCCSSSE
T ss_pred HHHHHh--CCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHcCcEEEEEECCccHHHHHHc--------CCCccce
Confidence 444432 37999999999999999999975 33333333 6899999999888877666 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|+ .+|+.+..
T Consensus 89 ~~~~-~~G~~~~~ 100 (117)
T 2xc2_A 89 FIAI-KNGEKVGD 100 (117)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCcEEEE
Confidence 8877 78988754
No 87
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=98.87 E-value=3.3e-09 Score=101.84 Aligned_cols=79 Identities=22% Similarity=0.181 Sum_probs=63.2
Q ss_pred HHHHHHHH-h-cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 128 EEAFAEAR-K-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 128 ~eAl~~Ak-~-e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
.+.++.+- + ++|||+|+|+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|
T Consensus 11 ~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~--------~i~~~P 79 (142)
T 1qgv_A 11 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEVPDFNKMY--------ELYDPC 79 (142)
T ss_dssp HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTCCTTTTSS--------CSCSSC
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEccccCHHHHHHc--------CCCCCC
Confidence 34454432 2 699999999999999999998743 4677777667999999999999887665 899999
Q ss_pred cEEEECCCCceec
Q 003187 206 LSVFLSPDLKPLM 218 (840)
Q Consensus 206 ~~vfl~p~g~~~~ 218 (840)
+++|+ .+|+++.
T Consensus 80 t~~~~-~~G~~v~ 91 (142)
T 1qgv_A 80 TVMFF-FRNKHIM 91 (142)
T ss_dssp EEEEE-ETTEEEE
T ss_pred EEEEE-ECCcEEE
Confidence 99998 4788774
No 88
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=98.85 E-value=1.4e-09 Score=98.78 Aligned_cols=77 Identities=25% Similarity=0.330 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
+.++++.+++|+++|.|+++||++|+.|.... .++++.+. .+++.++||.++.+++.+.| ++.++|
T Consensus 15 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~P 83 (120)
T 1mek_A 15 SNFAEALAAHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATEESDLAQQY--------GVRGYP 83 (120)
T ss_dssp TTHHHHHHHCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTTCCSSHHHH--------TCCSSS
T ss_pred hhHHHHHccCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCCCHHHHHHC--------CCCccc
Confidence 44555666799999999999999999998643 24555554 36899999999888887777 899999
Q ss_pred cEEEECCCCcee
Q 003187 206 LSVFLSPDLKPL 217 (840)
Q Consensus 206 ~~vfl~p~g~~~ 217 (840)
+++|+ .+|+.+
T Consensus 84 t~~~~-~~g~~~ 94 (120)
T 1mek_A 84 TIKFF-RNGDTA 94 (120)
T ss_dssp EEEEE-ESSCSS
T ss_pred EEEEE-eCCCcC
Confidence 99999 678765
No 89
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.83 E-value=3.8e-09 Score=98.63 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=57.6
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
+++|||+|.|+++||++|+.|... | .++++.+. .+++.++||.++.+.+.+.| ++.++|+++|++++
T Consensus 23 ~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~g 91 (133)
T 2dj3_A 23 DPKKDVLIEFYAPWCGHCKQLEPI-Y--TSLGKKYKGQKDLVIAKMDATANDITNDQY--------KVEGFPTIYFAPSG 91 (133)
T ss_dssp CTTSEEEEEECCTTCSHHHHHHHH-H--HHHHHHHTTSSSEEEEEECTTTSCCCCSSC--------CCSSSSEEEEECTT
T ss_pred cCCCcEEEEEECCCChhHHHHHHH-H--HHHHHHhcCCCCEEEEEecCCcCHHHHhhc--------CCCcCCEEEEEeCC
Confidence 358999999999999999999874 4 56777776 47999999999888766544 89999999999887
Q ss_pred Cc
Q 003187 214 LK 215 (840)
Q Consensus 214 g~ 215 (840)
++
T Consensus 92 ~~ 93 (133)
T 2dj3_A 92 DK 93 (133)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 90
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.83 E-value=7.4e-09 Score=105.34 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=68.6
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
..+.++.+...+|+++|.|+++||++|+.|.... .++++.+..+++.++||.++.+++.+.| ++.|+|+
T Consensus 103 ~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 171 (210)
T 3apq_A 103 ERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVDGLLRIGAVNCGDDRMLCRMK--------GVNSYPS 171 (210)
T ss_dssp CHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred cHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhcCceEEEEEECCccHHHHHHc--------CCCcCCe
Confidence 3567777778899999999999999999998743 5778778778999999999988777665 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|+ ++|+++..
T Consensus 172 ~~~~-~~G~~~~~ 183 (210)
T 3apq_A 172 LFIF-RSGMAAVK 183 (210)
T ss_dssp EEEE-CTTSCCEE
T ss_pred EEEE-ECCCceeE
Confidence 9999 89987543
No 91
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=98.83 E-value=7.7e-09 Score=93.56 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=55.7
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e-e~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
.+||++|.|+++||++|+.|... + .++++.+. ++..++||.+ +.+++.+.| ++.|+|+ +++.++|+
T Consensus 23 ~~~~vlv~f~a~wC~~C~~~~~~-l--~~~~~~~~-~v~~~~vd~~~~~~~~~~~~--------~v~~~Pt-~~~~~~G~ 89 (111)
T 2pu9_C 23 GDKPVVLDMFTQWCGPSKAMAPK-Y--EKLAEEYL-DVIFLKLDCNQENKTLAKEL--------GIRVVPT-FKILKENS 89 (111)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEECSSTTHHHHHHH--------CCSBSSE-EEEESSSS
T ss_pred CCCEEEEEEECCcCHhHHHHCHH-H--HHHHHHCC-CeEEEEEecCcchHHHHHHc--------CCCeeeE-EEEEeCCc
Confidence 59999999999999999999864 2 44555553 5899999998 677777666 8999999 45568999
Q ss_pred eecc
Q 003187 216 PLMG 219 (840)
Q Consensus 216 ~~~~ 219 (840)
++..
T Consensus 90 ~~~~ 93 (111)
T 2pu9_C 90 VVGE 93 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 92
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=98.83 E-value=2.4e-09 Score=101.28 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
++.++ ...+|||+|.|+++||++|+.|.. .+.++.++ +++.++||.++.+++.+.| ++.|+|+
T Consensus 32 ~~~l~--~~~~k~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 95 (133)
T 3cxg_A 32 NQVFS--STQNSSIVIKFGAVWCKPCNKIKE------YFKNQLNYYYVTLVDIDVDIHPKLNDQH--------NIKALPT 95 (133)
T ss_dssp HHHHT--C-CCSEEEEEEECTTCHHHHHTHH------HHHGGGGTEECEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHH--hcCCCEEEEEEECCCCHHHHHHHH------HHHHHHHhcCEEEEEEeccchHHHHHhc--------CCCCCCE
Confidence 45543 334899999999999999999864 33333322 4789999999988877666 8999999
Q ss_pred EEEE-CCCCc--eecc
Q 003187 207 SVFL-SPDLK--PLMG 219 (840)
Q Consensus 207 ~vfl-~p~g~--~~~~ 219 (840)
++|+ +++|+ ++..
T Consensus 96 ~~~~~~~~g~g~~~~~ 111 (133)
T 3cxg_A 96 FEFYFNLNNEWVLVHT 111 (133)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEEecCCCeEEEEE
Confidence 9999 56666 6543
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=6.7e-09 Score=110.16 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=61.8
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
..+|||+|+|+++||++|+.|... | .++++.+..+++.++||.++.+++.+.| ++.|+||++|+ .+|+
T Consensus 24 ~~~~~v~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~ 91 (287)
T 3qou_A 24 SMTTPVLFYFWSERSQHCLQLTPI-L--ESLAAQYNGQFILAKLDCDAEQMIAAQF--------GLRAIPTVYLF-QNGQ 91 (287)
T ss_dssp TTTSCEEEEEECTTCTTTTTTHHH-H--HHHHHHHTSSSEEEEEETTTCHHHHHTT--------TCCSSSEEEEE-ETTE
T ss_pred cCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEEeCccCHHHHHHc--------CCCCCCeEEEE-ECCE
Confidence 459999999999999999999864 3 5777777777999999999998887766 89999999999 6899
Q ss_pred eecc
Q 003187 216 PLMG 219 (840)
Q Consensus 216 ~~~~ 219 (840)
++..
T Consensus 92 ~~~~ 95 (287)
T 3qou_A 92 PVDG 95 (287)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 94
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=98.80 E-value=2.6e-09 Score=97.21 Aligned_cols=80 Identities=21% Similarity=0.175 Sum_probs=60.3
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p 212 (840)
.+..++|+++|.|+++||++|+.|... + .++++.. .++..++||.++.+++.+.| ++.++|+++|+ .
T Consensus 14 ~~~~~~~~~vv~f~a~wC~~C~~~~~~-l--~~~~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~ 80 (110)
T 2l6c_A 14 AHFEGLSDAIVFFHKNLCPHCKNMEKV-L--DKFGARA-PQVAISSVDSEARPELMKEL--------GFERVPTLVFI-R 80 (110)
T ss_dssp HHHTTCSEEEEEEECSSCSTHHHHHHH-H--HHHHTTC-TTSCEEEEEGGGCHHHHHHT--------TCCSSCEEEEE-E
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHH-H--HHHHHHC-CCcEEEEEcCcCCHHHHHHc--------CCcccCEEEEE-E
Confidence 455678999999999999999999752 2 2233222 25788899998888877665 89999999999 8
Q ss_pred CCceeccc-cccCC
Q 003187 213 DLKPLMGG-TYFPP 225 (840)
Q Consensus 213 ~g~~~~~~-tY~p~ 225 (840)
+|+++... +++++
T Consensus 81 ~G~~v~~~~G~~~~ 94 (110)
T 2l6c_A 81 DGKVAKVFSGIMNP 94 (110)
T ss_dssp SSSEEEEEESCCCH
T ss_pred CCEEEEEEcCCCCH
Confidence 99988643 44553
No 95
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.78 E-value=6.7e-09 Score=106.79 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=66.0
Q ss_pred HHHHHH-HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~-Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
++.|.. ..+++|||+|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.|+|+
T Consensus 19 ~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt 87 (222)
T 3dxb_A 19 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPT 87 (222)
T ss_dssp TTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCTTTGGGG--------TCCSBSE
T ss_pred HHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCCCHHHHHHc--------CCCcCCE
Confidence 444544 367899999999999999999998744 6777778777999999999999887766 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
++|+. +|+++..
T Consensus 88 ~~~~~-~G~~~~~ 99 (222)
T 3dxb_A 88 LLLFK-NGEVAAT 99 (222)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEEE-CCeEEEE
Confidence 99985 8887754
No 96
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=98.76 E-value=2.8e-09 Score=97.89 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003187 124 FAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 124 ~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G 203 (840)
..-..+.++.+.+++||++|.|+++||++|+.|.... .++++..+..++.| |.+...+.+. ....++. .|+.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~--~~~~~~~~~~-~~~~~~~-~~i~~ 87 (118)
T 1zma_A 15 EVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTL---SGVVAETKAHIYFI--NSEEPSQLND-LQAFRSR-YGIPT 87 (118)
T ss_dssp EECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHCCCCEEE--ETTCGGGHHH-HHHHHHH-HTCCS
T ss_pred hcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHH---HHHHHhcCCeEEEE--ECCCcCcHHH-HHHHHHH-cCCCC
Confidence 3334667777888899999999999999999998632 24454444345544 4444443332 1122222 38999
Q ss_pred CCcEEEECCCCceecc
Q 003187 204 WPLSVFLSPDLKPLMG 219 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~~ 219 (840)
+|+++|+. +|+++..
T Consensus 88 ~Pt~~~~~-~G~~~~~ 102 (118)
T 1zma_A 88 VPGFVHIT-DGQINVR 102 (118)
T ss_dssp SCEEEEEE-TTEEEEE
T ss_pred CCeEEEEE-CCEEEEE
Confidence 99999995 8887643
No 97
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=98.76 E-value=1.6e-08 Score=93.29 Aligned_cols=71 Identities=21% Similarity=0.188 Sum_probs=55.6
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e-e~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
.++||++|.|+++||++|+.|.... .++++... ++..++||.+ +.+++.+.| ++.|+|+++|+ ++|
T Consensus 35 ~~~~~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~-~~~~~~vd~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 101 (124)
T 1faa_A 35 AGDKPVVLDMFTQWCGPCKAMAPKY---EKLAEEYL-DVIFLKLDCNQENKTLAKEL--------GIRVVPTFKIL-KEN 101 (124)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSSTTHHHHHHH--------CCSSSSEEEEE-ETT
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHH---HHHHHHCC-CCEEEEEecCcchHHHHHHc--------CCCeeeEEEEE-eCC
Confidence 4799999999999999999998642 34555443 5889999997 567777666 89999996555 889
Q ss_pred ceecc
Q 003187 215 KPLMG 219 (840)
Q Consensus 215 ~~~~~ 219 (840)
+++..
T Consensus 102 ~~~~~ 106 (124)
T 1faa_A 102 SVVGE 106 (124)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 98754
No 98
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=98.75 E-value=6.2e-09 Score=99.98 Aligned_cols=97 Identities=11% Similarity=-0.008 Sum_probs=70.2
Q ss_pred cCCCccCccchHHHHHHH-HhcCCCEEEEEeccCC--hhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH
Q 003187 117 AHNPVDWFAWGEEAFAEA-RKRDVPIFLSIGYSTC--HWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT 193 (840)
Q Consensus 117 a~~~v~W~~~~~eAl~~A-k~e~KpI~l~~g~~wC--~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~ 193 (840)
....-.|..-.++-|+.- .+.++||+|+|+++|| +.|+.|.- ++ +++++.+...+..+|||+++.|++...|
T Consensus 11 l~~~~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaP-vl--eela~e~~~~v~~~KVdvDe~~~la~~y-- 85 (137)
T 2qsi_A 11 AARPNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAV-VL--PELINAFPGRLVAAEVAAEAERGLMARF-- 85 (137)
T ss_dssp ------CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHH-HH--HHHHHTSTTTEEEEEECGGGHHHHHHHH--
T ss_pred HHHhcCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHh-HH--HHHHHHccCCcEEEEEECCCCHHHHHHc--
Confidence 333345554334444443 3444599999999999 99999986 33 5677777667999999999999999988
Q ss_pred HHHHhcCCCCCCcEEEECCCCceeccc-cccCC
Q 003187 194 YVQALYGGGGWPLSVFLSPDLKPLMGG-TYFPP 225 (840)
Q Consensus 194 ~~~~~~g~~G~P~~vfl~p~g~~~~~~-tY~p~ 225 (840)
|+.++||.+|+ .||+++... +..|+
T Consensus 86 ------gV~siPTlilF-kdG~~v~~~vG~~~k 111 (137)
T 2qsi_A 86 ------GVAVCPSLAVV-QPERTLGVIAKIQDW 111 (137)
T ss_dssp ------TCCSSSEEEEE-ECCEEEEEEESCCCH
T ss_pred ------CCccCCEEEEE-ECCEEEEEEeCCCCH
Confidence 99999999999 588988763 45553
No 99
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.74 E-value=2.1e-08 Score=89.94 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=54.6
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc------CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~------~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~ 211 (840)
+|+++|.|+++||++|+.|.. .+.++..+ ++..++||.++.+++.+.| ++.++|+++|+
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~- 85 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAP------TWEELSKKEFPGLAGVKIAEVDCTAERNICSKY--------SVRGYPTLLLF- 85 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHH------HHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-
T ss_pred CCcEEEEEECCCChhHHHhhH------HHHHHHHHhhccCCceEEEEEeccccHhHHHhc--------CCCcccEEEEE-
Confidence 889999999999999999974 44444432 6889999999888877666 89999998888
Q ss_pred CCCceecc
Q 003187 212 PDLKPLMG 219 (840)
Q Consensus 212 p~g~~~~~ 219 (840)
.+|+.+..
T Consensus 86 ~~g~~~~~ 93 (111)
T 3uvt_A 86 RGGKKVSE 93 (111)
T ss_dssp ETTEEEEE
T ss_pred eCCcEEEe
Confidence 77887654
No 100
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=98.20 E-value=1.2e-09 Score=96.83 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=61.5
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p 212 (840)
.+.+.+||++|.|+++||++|+.+... + .++++.+..++..++||.++.+++.+.| ++.++|+++|+ +
T Consensus 14 ~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~ 81 (106)
T 2yj7_A 14 EVLKSDKPVLVDFWAPWCGPCRMIAPI-I--EELAKEYEGKVKVVKVNVDENPNTAAQY--------GIRSIPTLLLF-K 81 (106)
Confidence 445779999999999999999999763 3 5566666667888999998888777666 78899999999 8
Q ss_pred CCceecc
Q 003187 213 DLKPLMG 219 (840)
Q Consensus 213 ~g~~~~~ 219 (840)
+|+++..
T Consensus 82 ~g~~~~~ 88 (106)
T 2yj7_A 82 NGQVVDR 88 (106)
Confidence 9988754
No 101
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=98.73 E-value=1.4e-08 Score=95.66 Aligned_cols=100 Identities=10% Similarity=0.012 Sum_probs=68.0
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHH-----------------HH
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY-----------------VQ 196 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~-----------------~~ 196 (840)
.-.||+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++.-+.|.+. +.
T Consensus 28 ~~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (148)
T 3hcz_A 28 DVQAKYTILFFWDSQCGHCQQETPKL---YDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFK 104 (148)
T ss_dssp GCCCSEEEEEEECGGGCTTCSHHHHH---HHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHH
T ss_pred HcCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHH
Confidence 34689999999999999999986522 224455544 4888888887666533333221 12
Q ss_pred HhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHH
Q 003187 197 ALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAW 245 (840)
Q Consensus 197 ~~~g~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~ 245 (840)
...++.++|+++++|++|+++.... |.+.+.++++.+.+..
T Consensus 105 ~~~~i~~~P~~~lid~~G~i~~~~~--------g~~~~~~~l~~l~~~l 145 (148)
T 3hcz_A 105 ITYDIYATPVLYVLDKNKVIIAKRI--------GYENLDDFLVQYEKSL 145 (148)
T ss_dssp HHHCCCSSCEEEEECTTCBEEEESC--------CGGGHHHHHHHHHHHH
T ss_pred HhcCcCCCCEEEEECCCCcEEEecC--------CHHHHHHHHHHHHHHh
Confidence 2348899999999999999987531 1235667777766543
No 102
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=98.73 E-value=1.9e-08 Score=93.60 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=56.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH-----hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-----NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l-----n~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl 210 (840)
+.+|+|+|.|+++||+.|+.|.. .|+ ++++.+ +.+++.++||.++.+++.+.| ++.|+|+++|+
T Consensus 31 ~~~~~vlv~F~a~wC~~C~~~~p-~~~--~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~ 99 (127)
T 3h79_A 31 DPEKDVFVLYYVPWSRHSVAAMR-LWD--DLSMSQSQKRNHLTFVAARIDGEKYPDVIERM--------RVSGFPTMRYY 99 (127)
T ss_dssp CTTCEEEEEEECTTCHHHHHHHH-HHH--HHHHHHHTSTTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE
T ss_pred CCCCCEEEEEECCccHHHHHHhH-HHH--HHHHHHHhcccCCCeEEEEEEccccHhHHHhc--------CCccCCEEEEE
Confidence 46999999999999999999986 332 344433 246999999999998887766 89999999999
Q ss_pred CCCCc
Q 003187 211 SPDLK 215 (840)
Q Consensus 211 ~p~g~ 215 (840)
.++++
T Consensus 100 ~~g~~ 104 (127)
T 3h79_A 100 TRIDK 104 (127)
T ss_dssp CSSCS
T ss_pred eCCCC
Confidence 88765
No 103
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=98.72 E-value=5.8e-09 Score=100.51 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=71.6
Q ss_pred cCccchHHHHHHHHhcCCCEEEEEeccC--ChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHh
Q 003187 122 DWFAWGEEAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQAL 198 (840)
Q Consensus 122 ~W~~~~~eAl~~Ak~e~KpI~l~~g~~w--C~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~ 198 (840)
.|..-.++-|++--+.++||+|+|+++| |+.|+.|.- ++ +++++.+... +..+|||+++.|++...|
T Consensus 18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaP-vl--eela~e~~g~~v~~~KVdvDe~~~lA~~y------- 87 (140)
T 2qgv_A 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPV-MI--GELLHEFPDYTWQVAIADLEQSEAIGDRF------- 87 (140)
T ss_dssp TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHH-HH--HHHHTTCTTSCCEEEECCHHHHHHHHHHH-------
T ss_pred CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHh-HH--HHHHHHcCCCeEEEEEEECCCCHHHHHHc-------
Confidence 5555456667665568899999999999 999999986 22 4566656556 899999999999999988
Q ss_pred cCCCCCCcEEEECCCCceeccc-cccC
Q 003187 199 YGGGGWPLSVFLSPDLKPLMGG-TYFP 224 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~~-tY~p 224 (840)
|+.++||.+|+ .+|+++... +..|
T Consensus 88 -gV~sIPTlilF-k~G~~v~~~~G~~~ 112 (140)
T 2qgv_A 88 -GAFRFPATLVF-TGGNYRGVLNGIHP 112 (140)
T ss_dssp -TCCSSSEEEEE-ETTEEEEEEESCCC
T ss_pred -CCccCCEEEEE-ECCEEEEEEecCCC
Confidence 99999999988 588988653 4444
No 104
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=2.5e-08 Score=94.12 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=63.5
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCC------CCCc
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGG------GWPL 206 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~------G~P~ 206 (840)
++.++||++|.|+++||+.|+.|... | .++++.+.. ++..++||.++.+++.+.| ++. ++|+
T Consensus 22 ~~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~l~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~~~~~~~Pt 90 (137)
T 2dj0_A 22 ERDKRVTWIVEFFANWSNDCQSFAPI-Y--ADLSLKYNCTGLNFGKVDVGRYTDVSTRY--------KVSTSPLTKQLPT 90 (137)
T ss_dssp HHSTTSCEEEEECCTTCSTTTTTHHH-H--HHHHHHHCSSSCEEEECCTTTCHHHHHHT--------TCCCCSSSSCSSE
T ss_pred hcCCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHhCCCCeEEEEEeCccCHHHHHHc--------cCcccCCcCCCCE
Confidence 34556799999999999999999873 3 467777764 7999999999988877665 777 9999
Q ss_pred EEEECCCCceecc-ccccCCC
Q 003187 207 SVFLSPDLKPLMG-GTYFPPE 226 (840)
Q Consensus 207 ~vfl~p~g~~~~~-~tY~p~~ 226 (840)
++|+ .+|+++.. .++.+.+
T Consensus 91 ~~~~-~~G~~~~~~~G~~~~~ 110 (137)
T 2dj0_A 91 LILF-QGGKEAMRRPQIDKKG 110 (137)
T ss_dssp EEEE-SSSSEEEEESCBCSSS
T ss_pred EEEE-ECCEEEEEecCcCchH
Confidence 9999 78988754 2455543
No 105
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.70 E-value=2.2e-08 Score=94.80 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+.+..+..+++.++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|++
T Consensus 40 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 108 (140)
T 1v98_A 40 EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPIL---EELARDHAGRLKVVKVNVDEHPGLAARY--------GVRSVPTL 108 (140)
T ss_dssp ---------CCCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCCCHHHHHHC--------CCCccCEE
Confidence 455555543444499999999999999998743 5677777667999999999888877666 88999999
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+|+ .+|+++..
T Consensus 109 ~~~-~~G~~~~~ 119 (140)
T 1v98_A 109 VLF-RRGAPVAT 119 (140)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-eCCcEEEE
Confidence 998 79998754
No 106
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=2.7e-08 Score=92.20 Aligned_cols=66 Identities=20% Similarity=0.141 Sum_probs=55.0
Q ss_pred CEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 140 pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
+++|.|+++||++|+.|.... .++++.+.. ++..++||.++.+++.+.| ++.++|+++|+ ++|++.
T Consensus 24 ~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~ 90 (126)
T 1x5e_A 24 DWMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVTEQPGLSGRF--------IINALPTIYHC-KDGEFR 90 (126)
T ss_dssp EEEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEE
T ss_pred CEEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECcCCHHHHHHc--------CCcccCEEEEE-eCCeEE
Confidence 499999999999999998743 356666654 7999999999888877666 89999999999 889853
No 107
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=98.66 E-value=2.5e-08 Score=91.36 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=55.9
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-----CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-----WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-----~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
..++|+++|.|+++||++|+.|... | .++++.+.. ++..++||.++.+ +. + ++.++|+++|
T Consensus 22 ~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~-------~---~v~~~Pt~~~ 87 (121)
T 2djj_A 22 LDDTKDVLIEFYAPWCGHCKALAPK-Y--EELGALYAKSEFKDRVVIAKVDATAND-VP-------D---EIQGFPTIKL 87 (121)
T ss_dssp SCTTSCEEEEEECSSCTTHHHHHHH-H--HHHHHHHTTSSCTTSSEEEEEETTTSC-CS-------S---CCSSSSEEEE
T ss_pred hcCCCCEEEEEECCCCHhHHHhhHH-H--HHHHHHHhhcccCCceEEEEEECcccc-cc-------c---ccCcCCeEEE
Confidence 3579999999999999999999874 4 477888865 7999999998765 21 1 7889999999
Q ss_pred ECCCCc
Q 003187 210 LSPDLK 215 (840)
Q Consensus 210 l~p~g~ 215 (840)
++++|+
T Consensus 88 ~~~~~~ 93 (121)
T 2djj_A 88 YPAGAK 93 (121)
T ss_dssp ECSSCT
T ss_pred EeCcCC
Confidence 999887
No 108
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.64 E-value=6.5e-08 Score=90.76 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=56.0
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC-----ccHHHHHH--------------
Q 003187 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-----PDVDKVYM-------------- 192 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~-----pd~~~~y~-------------- 192 (840)
..+...+|+++|.|+++||+.|+.+.... .++.+.+.+.+..|.|+.+.. ++..+.|.
T Consensus 23 ~~~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 99 (148)
T 2b5x_A 23 REQLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSD 99 (148)
T ss_dssp HHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSS
T ss_pred chhhcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCc
Confidence 34445789999999999999999987532 345555555477777775431 11101110
Q ss_pred -HHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 193 -TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 193 -~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
...+ ..|+.++|+++++|++|+++..
T Consensus 100 ~~~~~-~~~v~~~P~~~lid~~G~i~~~ 126 (148)
T 2b5x_A 100 HALTD-AFENEYVPAYYVFDKTGQLRHF 126 (148)
T ss_dssp CHHHH-HTCCCCSSEEEEECTTCBEEEE
T ss_pred hhHHH-HhCCCCCCEEEEECCCCcEEEE
Confidence 1112 2388999999999999998875
No 109
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.64 E-value=3.6e-08 Score=95.71 Aligned_cols=95 Identities=9% Similarity=0.137 Sum_probs=61.5
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH----------------HHHHhc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT----------------YVQALY 199 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~----------------~~~~~~ 199 (840)
..+|+++|.|+++||++|+.+. |.+.++.++++..|.|+.++.++....|.+ ..+ ..
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 121 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGL-DL 121 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHH-HH
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHH-Hc
Confidence 4699999999999999999886 445565555666666665443332222211 111 23
Q ss_pred CCCCCCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHHH
Q 003187 200 GGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 200 g~~G~P~~vfl~p~g~~~~~~-tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
|+.++|++++++++|++++.. ++.+++ .+.+.|+++.+
T Consensus 122 ~v~~~P~~~lid~~G~i~~~~~g~~~~~------~l~~~l~~~l~ 160 (168)
T 2b1k_A 122 GVYGAPETFLIDGNGIIRYRHAGDLNPR------VWEEEIKPLWE 160 (168)
T ss_dssp TCCSSSEEEEECTTSBEEEEEESCCCHH------HHHHTTHHHHH
T ss_pred CccccCEEEEECCCCeEEEEEeCCCCHH------HHHHHHHHHHH
Confidence 888999999999999998652 334422 45555554443
No 110
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=98.63 E-value=3e-08 Score=98.31 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=65.9
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
..+|+++|.|+++||+.|+.+.. .+ .++++.. .++..++||+++.+++...|. ..++.++|+++|++.+|+
T Consensus 52 ~~~k~vvv~F~A~WC~pC~~~~P-~l--~~l~~~~-~~v~~~~v~~d~~~~~~~~~~-----~~~v~~iPt~i~~~~~G~ 122 (167)
T 1z6n_A 52 IERRYRLLVAGEMWCPDCQINLA-AL--DFAQRLQ-PNIELAIISKGRAEDDLRQRL-----ALERIAIPLVLVLDEEFN 122 (167)
T ss_dssp CCSCEEEEEECCTTCHHHHHHHH-HH--HHHHHHC-TTEEEEEECHHHHHHHTTTTT-----TCSSCCSSEEEEECTTCC
T ss_pred hCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHC-CCcEEEEEECCCCHHHHHHHH-----HcCCCCcCeEEEECCCCC
Confidence 35899999999999999999865 22 2344332 368888999987777655552 125789999999999999
Q ss_pred eeccccccCCCCCCCcccHHHHHHHHHHHHH
Q 003187 216 PLMGGTYFPPEDKYGRPGFKTILRKVKDAWD 246 (840)
Q Consensus 216 ~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~ 246 (840)
++...+..|. ...+.+......|.
T Consensus 123 ~~~~~g~~p~-------~~~~~i~~~~~~~~ 146 (167)
T 1z6n_A 123 LLGRFVERPQ-------AVLDGGPQALAAYK 146 (167)
T ss_dssp EEEEEESSCH-------HHHHHCHHHHHHHH
T ss_pred EEEEEcCCCH-------HHHHhHHHHHHHHH
Confidence 8654344442 34455555555554
No 111
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=98.63 E-value=2.9e-08 Score=93.38 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=64.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHH--------------HH--Hh
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY--------------VQ--AL 198 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~--------------~~--~~ 198 (840)
-.||+|+|.|+++||+.|+.+....-+.+++.+.+.+ ++..|.|+.++.++.-+.|.+. .. ..
T Consensus 25 ~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 104 (142)
T 3ewl_A 25 LKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL 104 (142)
T ss_dssp CCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred cCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence 3689999999999999999988766677888887764 5888888877655543333221 11 14
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003187 199 YGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.|+.++|+++++|++|+++++
T Consensus 105 ~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 105 YDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp SCCCSSSEEEEECTTCBEEEC
T ss_pred cCCCCCCeEEEECCCCCEEec
Confidence 588999999999999999874
No 112
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=98.62 E-value=3.3e-08 Score=84.57 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=52.9
Q ss_pred CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 139 KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
+++++.|+++||++|+.+... + .++++.+..++..++||.++.+++.+.| |+.|+|+++| +|++
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~---~G~~ 66 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRV-V--EEVANEMPDAVEVEYINVMENPQKAMEY--------GIMAVPTIVI---NGDV 66 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHH-H--HHHHHHCSSSEEEEEEESSSSCCTTTST--------TTCCSSEEEE---TTEE
T ss_pred ceEEEEEeCCCCCchHHHHHH-H--HHHHHHcCCceEEEEEECCCCHHHHHHC--------CCcccCEEEE---CCEE
Confidence 578999999999999999763 3 4555666558999999999888877666 8899999998 8887
No 113
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=98.61 E-value=5.8e-08 Score=90.20 Aligned_cols=79 Identities=20% Similarity=0.129 Sum_probs=58.4
Q ss_pred HHHHHHHh--cCCCEEEEEecc-------CChhhhhhhhcccCCHHHHHHHhcCeEEEEEcC-------CCCccHHHHHH
Q 003187 129 EAFAEARK--RDVPIFLSIGYS-------TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR-------EERPDVDKVYM 192 (840)
Q Consensus 129 eAl~~Ak~--e~KpI~l~~g~~-------wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~-------ee~pd~~~~y~ 192 (840)
+.+..+.+ .+|||+|.|+++ ||+.|+.|.... .++++.+..+++.++||. ++.+++.+.|
T Consensus 13 ~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~- 88 (123)
T 1wou_A 13 EEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVV---REGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNL- 88 (123)
T ss_dssp HHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHH---HHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHH-
T ss_pred HHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHH---HHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHC-
Confidence 44444433 399999999999 999999998633 334444444799999999 6667766655
Q ss_pred HHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 193 TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 193 ~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
++.++|+++|++. |..+.+
T Consensus 89 -------~i~~~Pt~~~~~~-~~~~~g 107 (123)
T 1wou_A 89 -------KVTAVPTLLKYGT-PQKLVE 107 (123)
T ss_dssp -------CCCSSSEEEETTS-SCEEEG
T ss_pred -------CCCeeCEEEEEcC-CceEec
Confidence 8999999999988 554443
No 114
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.61 E-value=3.6e-08 Score=90.73 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=55.2
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC-----CCccHHHHHHH---------------H
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVYMT---------------Y 194 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e-----e~pd~~~~y~~---------------~ 194 (840)
.-.||+++|.|+++||+.|+.+.... .++.+..++++..|.|+.. +.++....|.+ .
T Consensus 19 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 95 (138)
T 4evm_A 19 DYKGKKVYLKFWASWCSICLASLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGK 95 (138)
T ss_dssp GGTTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCH
T ss_pred HhCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchH
Confidence 34689999999999999999987643 4555555567888888431 11111111110 0
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003187 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+....|+.++|+++++|++|+++..
T Consensus 96 ~~~~~~v~~~P~~~lid~~G~i~~~ 120 (138)
T 4evm_A 96 LLETYGVRSYPTQAFIDKEGKLVKT 120 (138)
T ss_dssp HHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred HHHHcCcccCCeEEEECCCCcEEEe
Confidence 1122388999999999999998865
No 115
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.61 E-value=4.1e-08 Score=100.72 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~ 204 (840)
.+.++.+.+++|+|+|.|+++||+.|+.|.... .++++.+... ++.++||.++.+++.+.| ++.|+
T Consensus 22 ~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~ 90 (241)
T 3idv_A 22 DANFDNFVADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILKDKDPPIPVAKIDATSASVLASRF--------DVSGY 90 (241)
T ss_dssp TTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHTSSSCCCEEEEETTTCHHHHHHT--------TCCSS
T ss_pred ccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhhcCCceEEEEEeccCCHHHHHhc--------CCCcC
Confidence 456777778899999999999999999998733 4556666544 999999999988877666 89999
Q ss_pred CcEEEECCCCcee
Q 003187 205 PLSVFLSPDLKPL 217 (840)
Q Consensus 205 P~~vfl~p~g~~~ 217 (840)
|+++|+. +|+++
T Consensus 91 Pt~~~~~-~g~~~ 102 (241)
T 3idv_A 91 PTIKILK-KGQAV 102 (241)
T ss_dssp SEEEEEE-TTEEE
T ss_pred CEEEEEc-CCCcc
Confidence 9999995 57766
No 116
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=98.59 E-value=3.5e-08 Score=93.22 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHH--HHHHHHHHHhcCCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVD--KVYMTYVQALYGGGGW 204 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~--~~y~~~~~~~~g~~G~ 204 (840)
.+.++...++ ||+|.|+++||+.|+.|. |.+.++.++ .+..++||.++.++.. ......++. .++.|+
T Consensus 23 ~~~~~~~~~~--~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~-~~v~~~ 93 (135)
T 3emx_A 23 PEEFRQLLQG--DAILAVYSKTCPHCHRDW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNK-AGVEGT 93 (135)
T ss_dssp HHHHHHHHTS--SEEEEEEETTCHHHHHHH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHH-HTCCSS
T ss_pred HHHHHHHhCC--cEEEEEECCcCHhhhHhC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHH-cCCcee
Confidence 4556665554 999999999999999996 445555443 2777888884432211 111122222 389999
Q ss_pred CcEEEECCCCceeccc-cccC
Q 003187 205 PLSVFLSPDLKPLMGG-TYFP 224 (840)
Q Consensus 205 P~~vfl~p~g~~~~~~-tY~p 224 (840)
|+++|+. +|+++... ++.+
T Consensus 94 Pt~~~~~-~G~~v~~~~G~~~ 113 (135)
T 3emx_A 94 PTLVFYK-EGRIVDKLVGATP 113 (135)
T ss_dssp SEEEEEE-TTEEEEEEESCCC
T ss_pred CeEEEEc-CCEEEEEEeCCCC
Confidence 9888888 99987653 4554
No 117
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=98.59 E-value=1.3e-07 Score=90.97 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=59.7
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHH--------------HHhc
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYV--------------QALY 199 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~--------------~~~~ 199 (840)
.-.+|||+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|.+.. +.+.
T Consensus 31 ~~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (165)
T 3or5_A 31 SLKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFN 107 (165)
T ss_dssp GGTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHH
T ss_pred HcCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHh
Confidence 34689999999999999999987643 344555544 48888888887666555553221 1111
Q ss_pred -----CCCCCCcEEEECCCCceecc
Q 003187 200 -----GGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 200 -----g~~G~P~~vfl~p~g~~~~~ 219 (840)
++.++|+++++|++|+++..
T Consensus 108 ~~~~~~i~~~P~~~lid~~G~i~~~ 132 (165)
T 3or5_A 108 GYIDGGITGIPTSFVIDASGNVSGV 132 (165)
T ss_dssp TTSTTCSCSSSEEEEECTTSBEEEE
T ss_pred hhhccCCCCCCeEEEECCCCcEEEE
Confidence 68899999999999999865
No 118
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.59 E-value=6.7e-08 Score=89.52 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=56.2
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH--------------HHHh
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY--------------VQAL 198 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~--------------~~~~ 198 (840)
.+...+||++|.|+++||+.|+.+... + .++++.+. ++..|.|+.++.++..+.|.+. +...
T Consensus 19 l~~~~~k~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 94 (136)
T 1lu4_A 19 GASLQGKPAVLWFWTPWCPFCNAEAPS-L--SQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWAR 94 (136)
T ss_dssp GGGGTTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHH
T ss_pred HHHhCCCEEEEEEECCcChhHHHHHHH-H--HHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHh
Confidence 344568999999999999999998753 2 24444454 7778888877643322222111 1122
Q ss_pred cCCCCCCcEEEECCCCcee
Q 003187 199 YGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~ 217 (840)
.++.++|++++++++|+++
T Consensus 95 ~~i~~~P~~~lid~~G~i~ 113 (136)
T 1lu4_A 95 YNVPWQPAFVFYRADGTST 113 (136)
T ss_dssp TTCCSSSEEEEECTTSCEE
T ss_pred cCCCCCCEEEEECCCCcEE
Confidence 4889999999999999987
No 119
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=98.59 E-value=4.7e-08 Score=83.56 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=52.7
Q ss_pred CEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 140 pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
..++.|+++||++|+.+... + .++++.+..++..++||.++.+++.+.| |+.|+|+++| +|++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~---~G~~ 65 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEV-V--DEAKKEFGDKIDVEKIDIMVDREKAIEY--------GLMAVPAIAI---NGVV 65 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHH-H--HHHHHHHCSSCCEEEECTTTCGGGGGGT--------CSSCSSEEEE---TTTE
T ss_pred EEEEEEECCCCcchHHHHHH-H--HHHHHHhcCCeEEEEEECCCCHHHHHhC--------CceeeCEEEE---CCEE
Confidence 46889999999999999863 3 5566666668999999999988877666 8999999998 8887
No 120
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=98.58 E-value=1.2e-07 Score=89.89 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=56.8
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH---------------HHHHhc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT---------------YVQALY 199 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~---------------~~~~~~ 199 (840)
-.+||++|.|+++||++|+.+.... .++.+.+.+ ++..|.|+.+..++.-+.|.+ .+....
T Consensus 28 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 104 (152)
T 2lja_A 28 LKGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAY 104 (152)
T ss_dssp TTTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHT
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHc
Confidence 4589999999999999999876532 234444443 577888877765432222211 112234
Q ss_pred CCCCCCcEEEECCCCceeccc
Q 003187 200 GGGGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 200 g~~G~P~~vfl~p~g~~~~~~ 220 (840)
++.++|+++|++++|+++...
T Consensus 105 ~v~~~P~~~lid~~G~i~~~~ 125 (152)
T 2lja_A 105 LINGIPRFILLDRDGKIISAN 125 (152)
T ss_dssp TCCSSCCEEEECTTSCEEESS
T ss_pred CcCCCCEEEEECCCCeEEEcc
Confidence 889999999999999998763
No 121
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=98.57 E-value=9.7e-08 Score=91.10 Aligned_cols=82 Identities=11% Similarity=0.148 Sum_probs=56.1
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHH------------------
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMT------------------ 193 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l-n~~FV~vkvD~ee~pd~~~~y~~------------------ 193 (840)
.+.-.||||+|.|+++||+.|+.+... + .++.+.+ ++++..|.|+.+..+++. .|.+
T Consensus 19 l~~~~gk~vlv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~v~vv~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 94 (151)
T 3raz_A 19 LQSLKAPVRIVNLWATWCGPCRKEMPA-M--SKWYKAQKKGSVDMVGIALDTSDNIG-NFLKQTPVSYPIWRYTGANSRN 94 (151)
T ss_dssp GGGCCSSEEEEEEECTTCHHHHHHHHH-H--HHHHHTSCTTTEEEEEEESSCHHHHH-HHHHHSCCSSCEEEECCSCHHH
T ss_pred HHHhCCCEEEEEEEcCcCHHHHHHHHH-H--HHHHHHhccCCeEEEEEECCChHHHH-HHHHHcCCCCceEecCccchHH
Confidence 344479999999999999999998652 2 2233333 346888888886433332 2211
Q ss_pred HHHHhcC--CCCCCcEEEECCCCceecc
Q 003187 194 YVQALYG--GGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 194 ~~~~~~g--~~G~P~~vfl~p~g~~~~~ 219 (840)
..+ ..| +.++|++++++++|+++..
T Consensus 95 ~~~-~~~~~v~~~P~~~lid~~G~i~~~ 121 (151)
T 3raz_A 95 FMK-TYGNTVGVLPFTVVEAPKCGYRQT 121 (151)
T ss_dssp HHH-TTTCCSCCSSEEEEEETTTTEEEE
T ss_pred HHH-HhCCccCCCCEEEEECCCCcEEEE
Confidence 122 236 7899999999999998765
No 122
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=98.55 E-value=1.5e-07 Score=86.80 Aligned_cols=81 Identities=16% Similarity=0.063 Sum_probs=54.4
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------HHH
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQA 197 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~---------------~~~ 197 (840)
.+...+|+++|.|+++||+.|+.+.... .++.+.+. ++..|.|+.++.++..+.|.+. +..
T Consensus 20 l~~~~~k~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 95 (136)
T 1zzo_A 20 GESLLGKPAVLWFWAPWCPTCQGEAPVV---GQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWA 95 (136)
T ss_dssp GGGGTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHH
T ss_pred HHHhCCCeEEEEEEcCCChhHHHHHHHH---HHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHH
Confidence 3445689999999999999999986532 24444444 6777777775433222222110 111
Q ss_pred hcCCCCCCcEEEECCCCcee
Q 003187 198 LYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 198 ~~g~~G~P~~vfl~p~g~~~ 217 (840)
..|+.++|++++++++|+++
T Consensus 96 ~~~i~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 96 NFGVTQQPAYAFVDPHGNVD 115 (136)
T ss_dssp HTTCCSSSEEEEECTTCCEE
T ss_pred HcCCCCCceEEEECCCCCEE
Confidence 23889999999999999987
No 123
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=98.55 E-value=2.3e-07 Score=88.04 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=60.8
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH--------------HHHH
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQA 197 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~--------------~~~~ 197 (840)
.+...+|+|+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+..++....|.+ .+..
T Consensus 23 l~~~~gk~vll~f~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 99 (152)
T 3gl3_A 23 LSDKTGSVVYLDFWASWCGPCRQSFPW-M--NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPR 99 (152)
T ss_dssp GGGGTTSEEEEEEECTTCTHHHHHHHH-H--HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHH
T ss_pred HHHhCCCEEEEEEECCcCHHHHHHHHH-H--HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHH
Confidence 344568999999999999999998763 2 344555544 377777777755433333221 1122
Q ss_pred hcCCCCCCcEEEECCCCceeccc-cccC
Q 003187 198 LYGGGGWPLSVFLSPDLKPLMGG-TYFP 224 (840)
Q Consensus 198 ~~g~~G~P~~vfl~p~g~~~~~~-tY~p 224 (840)
..|+.++|++++++++|++++.. ++.+
T Consensus 100 ~~~v~~~P~~~lid~~G~i~~~~~g~~~ 127 (152)
T 3gl3_A 100 LYGVKGMPTSFLIDRNGKVLLQHVGFRP 127 (152)
T ss_dssp HTTCCSSSEEEEECTTSBEEEEEESCCT
T ss_pred HcCCCCCCeEEEECCCCCEEEEEccCCC
Confidence 34889999999999999998763 4444
No 124
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=98.55 E-value=1e-07 Score=97.15 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=66.0
Q ss_pred hHHHHHHHHhcCCCE-EEEEeccCChhhhhhhhcccCCHHHHHHHh----cCeEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003187 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI-~l~~g~~wC~wC~~me~etf~d~eVa~~ln----~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~ 201 (840)
.++.++..++.++++ +|.|+++||++|+.|... + .++++.+. .++..++||.++.+++.+.| ++
T Consensus 122 ~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~-~--~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v 190 (226)
T 1a8l_A 122 MDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRM-A--HKFAIENTKAGKGKILGDMVEAIEYPEWADQY--------NV 190 (226)
T ss_dssp CHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHH-H--HHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHT--------TC
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHH-H--HHHHHhcccccCCcEEEEEEEcccCHHHHHhC--------CC
Confidence 467888888888999 999999999999999863 3 46666665 48999999999888877666 89
Q ss_pred CCCCcEEEECCCCceecc
Q 003187 202 GGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 202 ~G~P~~vfl~p~g~~~~~ 219 (840)
.|+|+++|+ .+|+.+..
T Consensus 191 ~~~Pt~~~~-~~G~~~~~ 207 (226)
T 1a8l_A 191 MAVPKIVIQ-VNGEDRVE 207 (226)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred cccCeEEEE-eCCceeEE
Confidence 999998877 58887643
No 125
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.53 E-value=2e-07 Score=88.54 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=57.0
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH--------------HHHHh
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQAL 198 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~--------------~~~~~ 198 (840)
+.-.+|+++|.|+++||++|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|.+ .+...
T Consensus 22 ~~~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 98 (151)
T 2f9s_A 22 SDLKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDA 98 (151)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHH
T ss_pred HHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHh
Confidence 334689999999999999999987633 234455543 577777777654432222221 11223
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003187 199 YGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.|+.++|+++|+|++|+++..
T Consensus 99 ~~v~~~P~~~lid~~G~i~~~ 119 (151)
T 2f9s_A 99 YDVSPLPTTFLINPEGKVVKV 119 (151)
T ss_dssp TTCCSSCEEEEECTTSEEEEE
T ss_pred cCCCCCCeEEEECCCCcEEEE
Confidence 488999999999999999875
No 126
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=98.53 E-value=3.9e-07 Score=86.93 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=56.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHH-----------------HHHHHh
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYM-----------------TYVQAL 198 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~-----------------~~~~~~ 198 (840)
.||+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++.-+.|. ..+...
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES 104 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence 589999999999999999976532 344555544 47777887775433222221 112223
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003187 199 YGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.|+.++|+++++|++|+++..
T Consensus 105 ~~v~~~P~~~lid~~G~i~~~ 125 (152)
T 2lrn_A 105 YCIVGFPHIILVDPEGKIVAK 125 (152)
T ss_dssp TTCCSSCEEEEECTTSEEEEE
T ss_pred hCCCcCCeEEEECCCCeEEEe
Confidence 488999999999999999876
No 127
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.53 E-value=7.1e-08 Score=90.17 Aligned_cols=85 Identities=13% Similarity=0.019 Sum_probs=55.1
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCC---CccHHHHHHH--------------HHHHh
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE---RPDVDKVYMT--------------YVQAL 198 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee---~pd~~~~y~~--------------~~~~~ 198 (840)
.+|||+|.|+++||+.|+.+.... .++.+.+. +++..|.|+.+. .++.-+.|.+ .+...
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE 109 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence 799999999999999999987532 33444454 356666665542 2222222210 11122
Q ss_pred cCCCCCCcEEEECCCCceeccc-cccC
Q 003187 199 YGGGGWPLSVFLSPDLKPLMGG-TYFP 224 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~~-tY~p 224 (840)
.++.++|++++++++|+++... ++.+
T Consensus 110 ~~v~~~P~~~lid~~G~i~~~~~g~~~ 136 (145)
T 3erw_A 110 YHIITIPTSFLLNEKGEIEKTKIGPMT 136 (145)
T ss_dssp TTCCEESEEEEECTTCCEEEEEESCCC
T ss_pred cCcCccCeEEEEcCCCcEEEEEcCCcC
Confidence 3889999999999999998653 3444
No 128
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=98.51 E-value=2.2e-07 Score=89.37 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=59.7
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCC-------------------CccHHHHHHH
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-------------------RPDVDKVYMT 193 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee-------------------~pd~~~~y~~ 193 (840)
+.-++|+|+|.|+++||+.|+.+.... .++.+.+. .+++.|.|+.++ ..++.+.|
T Consensus 37 ~~~~gk~vll~F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 111 (158)
T 3hdc_A 37 AQYRGKIVLVNFWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRY-- 111 (158)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHT--
T ss_pred HHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHh--
Confidence 334689999999999999999877532 34555554 467787787765 33443333
Q ss_pred HHHHhcCCCCCCcEEEECCCCceeccc-cccCCC
Q 003187 194 YVQALYGGGGWPLSVFLSPDLKPLMGG-TYFPPE 226 (840)
Q Consensus 194 ~~~~~~g~~G~P~~vfl~p~g~~~~~~-tY~p~~ 226 (840)
++.++|++++++++|+++... ++.+.+
T Consensus 112 ------~v~~~P~~~lid~~G~i~~~~~G~~~~~ 139 (158)
T 3hdc_A 112 ------GANRLPDTFIVDRKGIIRQRVTGGIEWD 139 (158)
T ss_dssp ------TCCSSSEEEEECTTSBEEEEEESCCCTT
T ss_pred ------CCCCcceEEEEcCCCCEEEEEeCCCccc
Confidence 889999999999999998753 455543
No 129
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=98.50 E-value=2.8e-07 Score=87.65 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=64.8
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCC-ccHHHHHHHH--------------HHH
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMTY--------------VQA 197 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~-pd~~~~y~~~--------------~~~ 197 (840)
+.-.+|+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.+.. ++..+.|.+. +..
T Consensus 24 ~~~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 100 (154)
T 3kcm_A 24 SDLKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGK 100 (154)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHH
T ss_pred hhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHH
Confidence 334689999999999999999987633 345555544 566777776654 3222222111 112
Q ss_pred hcCCCCCCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHH
Q 003187 198 LYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 198 ~~g~~G~P~~vfl~p~g~~~~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
..|+.++|++++++++|+++... ++.+.. .+.+.+.|+++.
T Consensus 101 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~----~~~l~~~l~~l~ 142 (154)
T 3kcm_A 101 LYGTTGVPETFVIDRHGVILKKVVGAMEWD----HPEVIAFLNNEL 142 (154)
T ss_dssp HHTCCSBCEEEEECTTSBEEEEEESCCCTT----SHHHHHHHHTC-
T ss_pred HhCCCCCCeEEEECCCCcEEEEEcCCCccc----cHHHHHHHHHHH
Confidence 23889999999999999998752 333322 345666555554
No 130
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=98.50 E-value=2e-07 Score=92.01 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=58.7
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------HH
Q 003187 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQ 196 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~---------------~~ 196 (840)
..+.-.||+|+|.|+++||+.|+.+. |.+.++.++++..|.|+.++.++..+.|.+. +.
T Consensus 52 ~l~~~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (176)
T 3kh7_A 52 TEADLKGKPALVNVWGTWCPSCRVEH------PELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLG 125 (176)
T ss_dssp EGGGGCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHH
T ss_pred cHHHhCCCEEEEEEECCcCHHHHHHH------HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHH
Confidence 34445699999999999999999874 5677777767777777765444433333211 11
Q ss_pred HhcCCCCCCcEEEECCCCceecc
Q 003187 197 ALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 197 ~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
...|+.++|+++++|++|++++.
T Consensus 126 ~~~~v~~~P~~~lid~~G~i~~~ 148 (176)
T 3kh7_A 126 LDLGVYGAPETYLIDKQGIIRHK 148 (176)
T ss_dssp HHHTCCSSCEEEEECTTCBEEEE
T ss_pred HHcCCCCCCeEEEECCCCeEEEE
Confidence 12388899999999999999875
No 131
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=98.48 E-value=2.2e-07 Score=87.32 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=56.5
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH-hc-CeEEEEEcCCCCccHHHHHHH-----------------HHHH
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-ND-WFVSIKVDREERPDVDKVYMT-----------------YVQA 197 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l-n~-~FV~vkvD~ee~pd~~~~y~~-----------------~~~~ 197 (840)
.+|||+|.|+++||++|+.+.... .++++.+ .+ ++..|.|+.+..++.-+.|.+ .+..
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK 108 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred CCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence 689999999999999999987632 3455555 33 377777877654422222210 1122
Q ss_pred hcCCCCCCcEEEECCCCceeccc
Q 003187 198 LYGGGGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 198 ~~g~~G~P~~vfl~p~g~~~~~~ 220 (840)
..|+.++|+++++|++|+++...
T Consensus 109 ~~~v~~~P~~~lid~~G~i~~~~ 131 (148)
T 3fkf_A 109 QYAILTLPTNILLSPTGKILARD 131 (148)
T ss_dssp HTTCCSSSEEEEECTTSBEEEES
T ss_pred hcCCCCcCEEEEECCCCeEEEec
Confidence 34899999999999999998763
No 132
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=98.47 E-value=4.7e-08 Score=94.07 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=48.9
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc------CeEEEEE--------------------------
Q 003187 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKV-------------------------- 179 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~------~FV~vkv-------------------------- 179 (840)
..+...+|+|+|.|+++||++|+.+.. .+.++.++ .||.|-+
T Consensus 32 ~~~~~~gk~vlv~F~a~~C~~C~~~~~------~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (164)
T 2h30_A 32 SVYLKKDKPTLIKFWASWCPLCLSELG------QAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPV 105 (164)
T ss_dssp GGGCCTTSCEEEEECCTTCHHHHHHHH------HHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCE
T ss_pred eHHHhCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceE
Confidence 344567999999999999999998763 23332221 2333332
Q ss_pred cCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 180 DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 180 D~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+.++..++.+. .++.++|+++|+|++|+++..
T Consensus 106 ~~d~~~~~~~~--------~~v~~~P~~~lid~~G~i~~~ 137 (164)
T 2h30_A 106 VTDNGGTIAQN--------LNISVYPSWALIGKDGDVQRI 137 (164)
T ss_dssp EECTTCHHHHH--------TTCCSSSEEEEECTTSCEEEE
T ss_pred EEcCchHHHHH--------cCCCccceEEEECCCCcEEEE
Confidence 22222333333 388999999999999998865
No 133
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.47 E-value=5.1e-07 Score=85.83 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=54.9
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHH----------------HHH
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYM----------------TYV 195 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~----------------~~~ 195 (840)
.+.-.+||++|.|+++||++|+.+.. .+.++.++ ++..|.|+.++.++..+.|. ...
T Consensus 37 l~~~~gk~~ll~f~~~~C~~C~~~~~------~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (156)
T 1kng_A 37 PAAFKGKVSLVNVWASWCVPCHDEAP------LLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRAS 110 (156)
T ss_dssp GGGGTTSCEEEEEECTTCHHHHHHHH------HHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHH
T ss_pred hHHhCCCEEEEEEEcccCHhHHHHHH------HHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHH
Confidence 33445999999999999999998753 44444443 47777777655443322222 112
Q ss_pred HHhcCCCCCCcEEEECCCCceecc
Q 003187 196 QALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 196 ~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+ ..++.++|++++++++|+++..
T Consensus 111 ~-~~~v~~~P~~~~id~~G~i~~~ 133 (156)
T 1kng_A 111 I-EWGVYGVPETFVVGREGTIVYK 133 (156)
T ss_dssp H-HTTCCSSCEEEEECTTSBEEEE
T ss_pred H-hcCcCccCeEEEEcCCCCEEEE
Confidence 2 2488999999999999999864
No 134
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=98.43 E-value=6.1e-08 Score=88.64 Aligned_cols=73 Identities=12% Similarity=0.033 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC----CCccHHHHHHHHHHHhcCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE----ERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e----e~pd~~~~y~~~~~~~~g~~G 203 (840)
+++++.|+..+|+++|.|+++||+.|+.|.. +|+. ++ +.|-.|.+|.+ +.+++.+.| |+.|
T Consensus 2 ~~~~~la~~~~k~~vV~F~A~WC~~C~~~~p-~~~~--~a----~~~~~v~~~~~~~~~~~~~l~~~~--------~V~~ 66 (106)
T 3kp8_A 2 PLAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LFGA--AF----DQVPYVECSPNGPGTPQAQECTEA--------GITS 66 (106)
T ss_dssp HHHHHHHHHHHHHTCEEEECTTCHHHHHHHH-HHGG--GG----GGSCEEESCTTCTTSCCCHHHHHT--------TCCS
T ss_pred hHhhHHHHhcCCCEEEEEECCCCHHHHHHHH-HHHH--HH----HhCCEEEEecccccchhHHHHHHc--------CCeE
Confidence 4678888888999999999999999999964 3322 12 23333444432 567776655 9999
Q ss_pred CCcEEEECCCCceec
Q 003187 204 WPLSVFLSPDLKPLM 218 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~ 218 (840)
+|+++| +|+++.
T Consensus 67 ~PT~~i---~G~~~~ 78 (106)
T 3kp8_A 67 YPTWII---NGRTYT 78 (106)
T ss_dssp SSEEEE---TTEEEE
T ss_pred eCEEEE---CCEEec
Confidence 999777 888643
No 135
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=98.42 E-value=4.9e-07 Score=87.34 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=56.2
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCC------------------CCccHHHHHHHH
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDRE------------------ERPDVDKVYMTY 194 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~e------------------e~pd~~~~y~~~ 194 (840)
.-.+|+++|.|+++||+.|+.+.. .+.++..+ ++..|.|+.+ +.++..+.|.+.
T Consensus 34 ~~~gk~~lv~F~~~~C~~C~~~~~------~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (165)
T 3ha9_A 34 NVGGDVVILWFMAAWCPSCVYMAD------LLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIAN 107 (165)
T ss_dssp GCCSSEEEEEEECTTCTTHHHHHH------HHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHH
T ss_pred HhCCCEEEEEEECCCCcchhhhHH------HHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHH
Confidence 346899999999999999999874 44444333 5666666665 344332333221
Q ss_pred --------------HHHhcCCCCCCcEEEECCCCceecccccc
Q 003187 195 --------------VQALYGGGGWPLSVFLSPDLKPLMGGTYF 223 (840)
Q Consensus 195 --------------~~~~~g~~G~P~~vfl~p~g~~~~~~tY~ 223 (840)
+....++.++|+++++|++|++++ .++.
T Consensus 108 ~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~ 149 (165)
T 3ha9_A 108 YGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTT 149 (165)
T ss_dssp HSCTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEES
T ss_pred cCCCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCC
Confidence 122248899999999999999998 5555
No 136
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.42 E-value=3.6e-07 Score=93.58 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
+.++...+++|+++|.|+++||+.|+.|.... .++++.+... +..++||.++.+++.+.| ++.++|
T Consensus 138 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~P 206 (241)
T 3idv_A 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDATAETDLAKRF--------DVSGYP 206 (241)
T ss_dssp TTHHHHHHHCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETTTCHHHHHHT--------TCCSSS
T ss_pred HHHHHhhccCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECCCCHHHHHHc--------CCcccC
Confidence 45556667789999999999999999997632 3456666443 899999999988887766 899999
Q ss_pred cEEEECCCCceec
Q 003187 206 LSVFLSPDLKPLM 218 (840)
Q Consensus 206 ~~vfl~p~g~~~~ 218 (840)
+++|+. +|+++.
T Consensus 207 t~~~~~-~g~~~~ 218 (241)
T 3idv_A 207 TLKIFR-KGRPYD 218 (241)
T ss_dssp EEEEEE-TTEEEE
T ss_pred EEEEEE-CCeEEE
Confidence 999987 577664
No 137
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=98.42 E-value=2.7e-07 Score=87.03 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=62.9
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH----------------HHHHh
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT----------------YVQAL 198 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~----------------~~~~~ 198 (840)
-.+|+|+|.|+++||+.|+.+....-++|.+.+.+. .++..|.|+.++.++.-+.|.+ .....
T Consensus 29 ~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (142)
T 3eur_A 29 FPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNL 108 (142)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTC
T ss_pred cCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhh
Confidence 347999999999999999999876666677887774 4688888887765443222211 01223
Q ss_pred cCCCCCCcEEEECCCCceeccc
Q 003187 199 YGGGGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~~ 220 (840)
.++.++|+++++|++|++++..
T Consensus 109 ~~v~~~P~~~lid~~G~i~~~~ 130 (142)
T 3eur_A 109 YDLRAIPTLYLLDKNKTVLLKD 130 (142)
T ss_dssp SCCTTCSEEEEECTTCBEEEEE
T ss_pred cCCCcCCeEEEECCCCcEEecC
Confidence 4788999999999999998763
No 138
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=98.42 E-value=4e-07 Score=88.98 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=56.2
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHH----------------HHH
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYM----------------TYV 195 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~pd~~~~y~----------------~~~ 195 (840)
+.-.+|+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++.-+.|. ..+
T Consensus 44 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (165)
T 3s9f_A 44 DSLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEAL 120 (165)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHH
Confidence 334689999999999999999987533 345555653 56666666554432111111 112
Q ss_pred HHhcCCCCCCcEEEECCC-Cceecc
Q 003187 196 QALYGGGGWPLSVFLSPD-LKPLMG 219 (840)
Q Consensus 196 ~~~~g~~G~P~~vfl~p~-g~~~~~ 219 (840)
....++.++|+++|++++ |+++..
T Consensus 121 ~~~~~v~~~Pt~~lid~~~G~iv~~ 145 (165)
T 3s9f_A 121 TKKYSVESIPTLIGLNADTGDTVTT 145 (165)
T ss_dssp HHHTTCCSSSEEEEEETTTCCEEES
T ss_pred HHHcCCCCCCEEEEEeCCCCEEEec
Confidence 223489999999999998 999875
No 139
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=98.41 E-value=7.7e-07 Score=83.96 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=56.8
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHH-----------------HHH
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTY 194 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~pd~~~~y-----------------~~~ 194 (840)
+.-.+|+|+|.|+++||+.|+.+.... .++++.+. +++..|.|+.++.++..+.| ...
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (144)
T 1i5g_A 24 PSLAGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFL 100 (144)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHH
Confidence 344689999999999999999987533 34556665 36777777766433211111 122
Q ss_pred HHHhcCCCCCCcEEEEC-CCCceecc
Q 003187 195 VQALYGGGGWPLSVFLS-PDLKPLMG 219 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~-p~g~~~~~ 219 (840)
.+ ..++.++|+++|++ ++|+++..
T Consensus 101 ~~-~~~v~~~P~~~lid~~~G~i~~~ 125 (144)
T 1i5g_A 101 TT-GFDVKSIPTLVGVEADSGNIITT 125 (144)
T ss_dssp HH-HTTCCSSSEEEEEETTTCCEEES
T ss_pred HH-HcCCCCCCEEEEEECCCCcEEec
Confidence 22 24889999999999 89999875
No 140
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=98.40 E-value=5.1e-07 Score=93.74 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcC--CCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDR--EERPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~--ee~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
.+.+|+++|.|+++||+.|+.|.... .++++.+.. .+..++||. ++.+++.+.| ++.++|+++|
T Consensus 27 ~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~--------~v~~~Pt~~~ 95 (244)
T 3q6o_A 27 LGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVKAWRPALYLAALDCAEETNSAVCRDF--------NIPGFPTVRF 95 (244)
T ss_dssp SSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHT--------TCCSSSEEEE
T ss_pred hhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHHhccCcEEEEEEeCCchhhHHHHHHc--------CCCccCEEEE
Confidence 45679999999999999999998633 566777765 788999998 5667776665 8999999999
Q ss_pred ECCCCc
Q 003187 210 LSPDLK 215 (840)
Q Consensus 210 l~p~g~ 215 (840)
+++.++
T Consensus 96 ~~~g~~ 101 (244)
T 3q6o_A 96 FXAFTX 101 (244)
T ss_dssp ECTTCC
T ss_pred EeCCCc
Confidence 997433
No 141
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=98.39 E-value=5.4e-08 Score=93.80 Aligned_cols=78 Identities=12% Similarity=0.030 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCCEEEEEeccC--ChhhhhhhhcccCCHHHHHHHhcCeE--EEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003187 129 EAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDWFV--SIKVDREERPDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~w--C~wC~~me~etf~d~eVa~~ln~~FV--~vkvD~ee~pd~~~~y~~~~~~~~g~~G~ 204 (840)
+-|+...+++++++|.|+++| |+.|+.|... | +++++.+ .++. .++||.++.+++.+.| ++.|+
T Consensus 25 ~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~-l--~~la~~~-~~v~~~~~~Vd~d~~~~la~~~--------~V~~i 92 (142)
T 2es7_A 25 STVDDWIKRVGDGVILLSSDPRRTPEVSDNPVM-I--AELLREF-PQFDWQVAVADLEQSEAIGDRF--------NVRRF 92 (142)
T ss_dssp C--------CCSEEEEECCCSCC----CCHHHH-H--HHHHHTC-TTSCCEEEEECHHHHHHHHHTT--------TCCSS
T ss_pred ccHHHHHHhCCCEEEEEECCCCCCccHHHHHHH-H--HHHHHHh-cccceeEEEEECCCCHHHHHhc--------CCCcC
Confidence 445555556778999999988 9999999752 3 3444444 4677 8999999888877665 89999
Q ss_pred CcEEEECCCCceecc
Q 003187 205 PLSVFLSPDLKPLMG 219 (840)
Q Consensus 205 P~~vfl~p~g~~~~~ 219 (840)
||++|+ .+|+++..
T Consensus 93 PT~~~f-k~G~~v~~ 106 (142)
T 2es7_A 93 PATLVF-TDGKLRGA 106 (142)
T ss_dssp SEEEEE-SCC----C
T ss_pred CeEEEE-eCCEEEEE
Confidence 999999 89998754
No 142
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=98.39 E-value=3.9e-07 Score=87.17 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=52.7
Q ss_pred HHHhcCCCEEEEEeccCChhhhh-hhhcccCCHHHHHHHhc-CeEEEEEcCC------CCccHHHHHHHH----------
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHV-MEVESFEDEGVAKLLND-WFVSIKVDRE------ERPDVDKVYMTY---------- 194 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~-me~etf~d~eVa~~ln~-~FV~vkvD~e------e~pd~~~~y~~~---------- 194 (840)
.+.-.||||+|.|+++||+.|+. |.. .+ .++.+.+.+ ++..|.|+.+ +.++..+.|.+.
T Consensus 25 l~~~~gk~vlv~F~a~~C~~C~~e~~~-~l--~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 101 (160)
T 3lor_A 25 NEDLRGKVVVVEVFQMLCPGCVNHGVP-QA--QKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVD 101 (160)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHTHHH-HH--HHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHhCCCEEEEEEEcCCCcchhhhhhH-HH--HHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEEC
Confidence 34445999999999999999997 443 11 223333332 4666666642 122222222210
Q ss_pred ----------HHHhcCCCCCCcEEEECCCCceecc
Q 003187 195 ----------VQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 195 ----------~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+....|+.++|+++|++++|+++..
T Consensus 102 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 136 (160)
T 3lor_A 102 MPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQV 136 (160)
T ss_dssp CCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred CccccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence 1122488999999999999999875
No 143
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=98.38 E-value=4.4e-07 Score=76.30 Aligned_cols=65 Identities=17% Similarity=0.034 Sum_probs=51.3
Q ss_pred EEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccc
Q 003187 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 141 I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~ 220 (840)
+.|.|+++||+.|+.|.... .++++.++.++..++|| .+++.+.| |+.|+|+++| +|+++..
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~---~~~~~~~~--------~v~~~Pt~~~---~G~~~~~- 63 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK---EMDQILEA--------GLTALPGLAV---DGELKIM- 63 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC---SHHHHHHH--------TCSSSSCEEE---TTEEEEC-
T ss_pred cEEEEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec---CHHHHHHC--------CCCcCCEEEE---CCEEEEc-
Confidence 46889999999999998744 56777777788899998 45555555 8999999999 8998766
Q ss_pred ccc
Q 003187 221 TYF 223 (840)
Q Consensus 221 tY~ 223 (840)
++.
T Consensus 64 G~~ 66 (77)
T 1ilo_A 64 GRV 66 (77)
T ss_dssp SSC
T ss_pred CCC
Confidence 444
No 144
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=98.37 E-value=4.5e-06 Score=97.35 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=148.6
Q ss_pred CCCCCCCCC----CCCCCh-------------hHHHHHHHhhhhhcccCCCCC--CHHHHHHHHHHHHHHHhCCCcccCC
Q 003187 298 SRFGGFGSA----PKFPRP-------------VEIQMMLYHSKKLEDTGKSGE--ASEGQKMVLFTLQCMAKGGIHDHVG 358 (840)
Q Consensus 298 ~~~GGfg~a----PKFP~~-------------~~l~~Ll~~~~~~~~~~~~~~--~~~~~~~a~~TL~~Ma~GGi~D~v~ 358 (840)
...||+..| -||-.| ....-||.++....+.....+ -+++++-+.--+|-|.+ .++. .
T Consensus 134 Dl~GGwyDAsGD~~Ky~~~~a~t~~~npqQ~~~~~w~ll~~~~~~~~~~~~~~~~~~~lldE~rWg~D~llk--m~~~-~ 210 (586)
T 3h7l_A 134 DVHGGWYDASGDVSKYLSHLSYANYLNPQQTPMVVWNILKGLSLLEGSEDIAAFTRTRLIEEALFGADFLVR--MQNE-K 210 (586)
T ss_dssp CCCCSBCSBTTBCCEESCCCGGGSSCCCCCHHHHHHHHHHHHHHSTTSSSSCHHHHHHHHHHHHHHHHHHHH--TBCT-T
T ss_pred ecccccccCCCCcceeccchhhhhhcccchhhHHHHHHHHHHHHhhhhccCcccchHHHHHHHHHHHHHHHh--cccC-C
Confidence 358999777 476655 222334444433222111111 35889999999999988 7775 5
Q ss_pred CeEEEEecCCCCCCCCCcchH-------------------HHHHHHHHHHHHHHHc-----cCChHHHHHHHHHHHHHHH
Q 003187 359 GGFHRYSVDERWHVPHFEKML-------------------YDQGQLANVYLDAFSL-----TKDVFYSYICRDILDYLRR 414 (840)
Q Consensus 359 GGF~RYsvD~~W~vPHFEKML-------------------YDNA~Ll~~ya~Ay~~-----tgd~~y~~~A~~t~~fl~r 414 (840)
|+|| +.|...|..+.-+..+ -.|++++.+++.|+++ .+.+.|++.|+++.+|+.+
T Consensus 211 g~~y-~qVgd~W~~d~~~R~~~~~~~~~~~~~~~y~~~~~~~agl~aAALA~Asrvf~d~~~~a~~~L~aA~~a~~fa~~ 289 (586)
T 3h7l_A 211 GFFY-MTVFDKWSKDTAQREICAYETQLGHKFDDYQAGFRQGGGVAIAALAAASRLGVHGEYDQQKYRNAAENGYWHLKE 289 (586)
T ss_dssp SCBB-CEEECTTCCCGGGCEEEEEETTTTEEESCCBCCGGGTHHHHHHHHHHHTTSSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred CeEE-EEecCCCCCCCCccccccccCCCCCCCcceecCCCCcHHHHHHHHHHHhcccCCCCcChHHHHHHHHHHHHHHHh
Confidence 7787 4664458642111100 1389999999999999 5556789999999999998
Q ss_pred hccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCc
Q 003187 415 DMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS 494 (840)
Q Consensus 415 ~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~ 494 (840)
.+. .|+ .|.++
T Consensus 290 ~~~----~y~--~~g~~--------------------------------------------------------------- 300 (586)
T 3h7l_A 290 HNT----QYL--NDGEE--------------------------------------------------------------- 300 (586)
T ss_dssp HHH----HHS--TTSCC---------------------------------------------------------------
T ss_pred cCc----ccc--CCCCc---------------------------------------------------------------
Confidence 642 121 00000
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHH
Q 003187 495 SASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKE 574 (840)
Q Consensus 495 ~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~ 574 (840)
-+.||. .++||.+.+|+++++ +.
T Consensus 301 ----------------------------------~~~De~-------~~~WAA~eLy~ATgd----------------~~ 323 (586)
T 3h7l_A 301 ----------------------------------NIIDEY-------CALLASVELFKATKE----------------TR 323 (586)
T ss_dssp ----------------------------------CHHHHH-------HHHHHHHHHHHHHCC----------------HH
T ss_pred ----------------------------------cchhHH-------HHHHHHHHHHHHhCC----------------HH
Confidence 012332 479999999999998 79
Q ss_pred HHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 003187 575 YMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 648 (840)
Q Consensus 575 yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~ 648 (840)
||+.|+..++.+.+++++.+.++++++..++.+...-.....+..+.+|+.+.+++++..+.+.|++++....+
T Consensus 324 YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~~~r~~~d~a~~gl~~iaLl~l~~~~~d~~~~~~a~~~i~~~~d 397 (586)
T 3h7l_A 324 YLEESRLWAQRLVARQMSDEQIQHFWSANQDGSRPYFHAAEAGLPTIALCEYLAIEDDSVQTESVKCIVNRACE 397 (586)
T ss_dssp HHHHHHHHHHHHHTTEECCSSCSSEEBSSSSSSSBCCCTTTTTHHHHHHHHHHHHCCSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCccCCCcCCCcccCCcccccccccHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhh
Confidence 99999999999999998766777887754432211111124567788999999999998888888887776655
No 145
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=98.37 E-value=7.2e-07 Score=85.27 Aligned_cols=84 Identities=15% Similarity=0.070 Sum_probs=52.9
Q ss_pred HHHhcCCCEEEEEeccCChhhhhh-hhcccCCHHHHHHHh-cCeEEEEEcCC------CCccHHHHHHHH----------
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLN-DWFVSIKVDRE------ERPDVDKVYMTY---------- 194 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~m-e~etf~d~eVa~~ln-~~FV~vkvD~e------e~pd~~~~y~~~---------- 194 (840)
.+.-.||+|+|.|+++||+.|+.+ .. .+ .++.+.+. +++..|.|+.+ +.++..+.|.+.
T Consensus 23 l~~~~gk~vlv~f~a~wC~~C~~~~~~-~l--~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 99 (158)
T 3eyt_A 23 LADLRGKVIVIEAFQMLCPGCVMHGIP-LA--QKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVD 99 (158)
T ss_dssp TGGGTTSEEEEEEECTTCHHHHHTHHH-HH--HHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHhCCCEEEEEEECCcCcchhhhhhH-HH--HHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEc
Confidence 344459999999999999999984 32 12 23344443 35666666642 122222222111
Q ss_pred ---------HHHhcCCCCCCcEEEECCCCceecc
Q 003187 195 ---------VQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 195 ---------~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+....|+.++|++++++++|+++..
T Consensus 100 ~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 133 (158)
T 3eyt_A 100 QPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH 133 (158)
T ss_dssp CCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred CccchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 1223488999999999999999875
No 146
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=4.5e-08 Score=94.15 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH--hcCeEEEEEcCCCCccHHHHHHHHH-----------
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYV----------- 195 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l--n~~FV~vkvD~ee~pd~~~~y~~~~----------- 195 (840)
+.+..+.-++|+|+|.|+++||++|+.+.. .++. ++.+.+ ++++..|.|+.++.++..+.|.+..
T Consensus 24 ~~~~l~~~~gk~vll~f~a~~C~~C~~~~~-~l~~-~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~ 101 (159)
T 2ls5_A 24 KQVTLSSLRGKVVMLQFTASWCGVCRKEMP-FIEK-DIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPG 101 (159)
Confidence 345555557999999999999999998765 3443 122222 3577788888776555444443211
Q ss_pred ---HHhcC--CCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHH
Q 003187 196 ---QALYG--GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (840)
Q Consensus 196 ---~~~~g--~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (840)
....| ..|+|+++|+|++|+++.......+ +.+.++|+++.+.
T Consensus 102 ~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~------~~l~~~l~~l~~~ 149 (159)
T 2ls5_A 102 ADIFAKYALRDAGITRNVLIDREGKIVKLTRLYNE------EEFASLVQQINEM 149 (159)
Confidence 01113 4679999999999999875322222 2456666655543
No 147
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=98.37 E-value=6.5e-07 Score=84.20 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=55.5
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHH-----------------HHH
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTY 194 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~pd~~~~y-----------------~~~ 194 (840)
+.-++|+|+|.|+++||+.|+.+.... .++++.+. +++..|.|+.+..++.-+.| ...
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (144)
T 1o73_A 24 GSLVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSEL 100 (144)
T ss_dssp GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHhCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHH
Confidence 344689999999999999999987532 34555554 46666666666433211111 122
Q ss_pred HHHhcCCCCCCcEEEEC-CCCceecc
Q 003187 195 VQALYGGGGWPLSVFLS-PDLKPLMG 219 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~-p~g~~~~~ 219 (840)
.+. .++.++|+++|++ ++|+++..
T Consensus 101 ~~~-~~v~~~Pt~~lid~~~G~i~~~ 125 (144)
T 1o73_A 101 GKT-FGVESIPTLITINADTGAIIGT 125 (144)
T ss_dssp HHH-HTCCSSSEEEEEETTTCCEEES
T ss_pred HHH-cCCCCCCEEEEEECCCCeEEec
Confidence 222 3889999999999 89999875
No 148
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=98.36 E-value=1.2e-06 Score=82.94 Aligned_cols=82 Identities=10% Similarity=0.011 Sum_probs=56.2
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHH-----------------HHH
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTY 194 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~pd~~~~y-----------------~~~ 194 (840)
+.-.+|+|+|.|+++||+.|+.+.... .++++.+. +++..|.|+.++.++.-+.| ...
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (146)
T 1o8x_A 24 KSLAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKL 100 (146)
T ss_dssp GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHH
T ss_pred HHhCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHH
Confidence 344689999999999999999987532 34556665 36666666665433211111 122
Q ss_pred HHHhcCCCCCCcEEEEC-CCCceecc
Q 003187 195 VQALYGGGGWPLSVFLS-PDLKPLMG 219 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~-p~g~~~~~ 219 (840)
.+ ..++.++|++++++ ++|+++..
T Consensus 101 ~~-~~~v~~~Pt~~lid~~~G~i~~~ 125 (146)
T 1o8x_A 101 SK-HFNVESIPTLIGVDADSGDVVTT 125 (146)
T ss_dssp HH-HTTCCSSSEEEEEETTTCCEEES
T ss_pred HH-HhCCCCCCEEEEEECCCCeEEEe
Confidence 22 24889999999999 89999875
No 149
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=98.36 E-value=8.5e-07 Score=95.61 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=63.7
Q ss_pred CccCccchHHHHHHHH-hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC--CCccHHHHHHHHHH
Q 003187 120 PVDWFAWGEEAFAEAR-KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQ 196 (840)
Q Consensus 120 ~v~W~~~~~eAl~~Ak-~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e--e~pd~~~~y~~~~~ 196 (840)
+-++..-..+-|+..- +.+|||+|.|+++||+.|+.|.... .++++.++..+..++||.+ +.+++.+.|
T Consensus 16 ~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~----- 87 (298)
T 3ed3_A 16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKY----- 87 (298)
T ss_dssp CTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHT-----
T ss_pred CCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhC-----
Confidence 3444555566777765 5799999999999999999998743 5777778766666667665 566666555
Q ss_pred HhcCCCCCCcEEEECCCC
Q 003187 197 ALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 197 ~~~g~~G~P~~vfl~p~g 214 (840)
++.|+|+++|+.+.+
T Consensus 88 ---~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 88 ---DVNGFPTLMVFRPPK 102 (298)
T ss_dssp ---TCCBSSEEEEEECCC
T ss_pred ---CCCccceEEEEECCc
Confidence 899999999998754
No 150
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.36 E-value=9.9e-07 Score=83.45 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=51.6
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
.+|||+|.|+++||+.|+.|... | .++++.. .++..++||.++.++ . .++.++|+++|+. +|++
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~-l--~~la~~~-~~v~~~~vd~~~~~~---~--------~~i~~~Pt~~~~~-~G~~ 92 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQH-L--SVLARKF-PETKFVKAIVNSCIE---H--------YHDNCLPTIFVYK-NGQI 92 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHH-H--HHHHHHC-SSEEEEEECCSSSCS---S--------CCSSCCSEEEEES-SSSC
T ss_pred CCCEEEEEEECCCChHHHHHHHH-H--HHHHHHC-CCcEEEEEEhhcCcc---c--------CCCCCCCEEEEEE-CCEE
Confidence 35899999999999999999862 3 2344433 368889999987652 2 3889999999997 8988
Q ss_pred ecc
Q 003187 217 LMG 219 (840)
Q Consensus 217 ~~~ 219 (840)
+..
T Consensus 93 v~~ 95 (135)
T 2dbc_A 93 EGK 95 (135)
T ss_dssp SEE
T ss_pred EEE
Confidence 754
No 151
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.35 E-value=1.2e-06 Score=83.21 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=50.7
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-CccHHHHHH---------------HHHHHh
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-RPDVDKVYM---------------TYVQAL 198 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-~pd~~~~y~---------------~~~~~~ 198 (840)
-.+|+++|.|+++||+.|+.+... + .++.+.+.+ ++..|-|+.+. .++..+.|. ...+ .
T Consensus 26 ~~gk~~lv~f~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~ 101 (153)
T 2l5o_A 26 LQGKVTLINFWFPSCPGCVSEMPK-I--IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQ-A 101 (153)
T ss_dssp HTTCEEEEEEECTTCTTHHHHHHH-H--HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHH-H
T ss_pred hCCCEEEEEEECCCCccHHHHHHH-H--HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHH-H
Confidence 368999999999999999998653 2 244555543 35555554321 111111110 0111 1
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003187 199 YGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.|+.++|++++++++|+++..
T Consensus 102 ~~i~~~P~~~lid~~G~i~~~ 122 (153)
T 2l5o_A 102 FGTQVYPTSVLIGKKGEILKT 122 (153)
T ss_dssp HTCCSSSEEEEECSSSCCCEE
T ss_pred cCCCccCeEEEECCCCcEEEE
Confidence 388999999999999998754
No 152
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=98.34 E-value=1.4e-06 Score=83.65 Aligned_cols=79 Identities=8% Similarity=0.096 Sum_probs=55.7
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH----------------HHHHhc
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT----------------YVQALY 199 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~----------------~~~~~~ 199 (840)
.||||+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.++.++..+.|.. ..+ ..
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~ 109 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLA-L--RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYIS-LY 109 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHH-HH
T ss_pred CCCEEEEEEEcCCChhhHHHHHH-H--HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHH-Hc
Confidence 58999999999999999986542 2 234444543 488888887765543222210 222 23
Q ss_pred CCCCCCcEEEECCCCceecc
Q 003187 200 GGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 200 g~~G~P~~vfl~p~g~~~~~ 219 (840)
|+.++|+++|+|++|+++..
T Consensus 110 ~v~~~P~~~lid~~G~i~~~ 129 (152)
T 2lrt_A 110 NVTNLPSVFLVNRNNELSAR 129 (152)
T ss_dssp TCCSCSEEEEEETTTEEEEE
T ss_pred CcccCceEEEECCCCeEEEe
Confidence 88899999999999999875
No 153
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=98.34 E-value=8.4e-07 Score=87.42 Aligned_cols=86 Identities=12% Similarity=0.144 Sum_probs=58.9
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC-e------EEEEEcCCC-CccHHHHHHHHHH------
Q 003187 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-F------VSIKVDREE-RPDVDKVYMTYVQ------ 196 (840)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-F------V~vkvD~ee-~pd~~~~y~~~~~------ 196 (840)
+..+.-.+|+|+|.|+++||+.|+.+... + .++.+.+.+. + ..|.|+.++ .++..+.|.+...
T Consensus 52 ~~l~~~~gk~vlv~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~ 128 (183)
T 3lwa_A 52 INLSDFENQVVILNAWGQWCAPCRSESDD-L--QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSI 128 (183)
T ss_dssp EEGGGGTTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEE
T ss_pred ecHHHhCCCEEEEEEECCcCHhHHHHHHH-H--HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEE
Confidence 33444568999999999999999988653 2 3355555543 6 777888776 5665555533211
Q ss_pred ---------Hh--cCCCCCCcEEEECCCCceecc
Q 003187 197 ---------AL--YGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 197 ---------~~--~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.+ .++.++|++++++++|+++..
T Consensus 129 ~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 162 (183)
T 3lwa_A 129 YDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAV 162 (183)
T ss_dssp ECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEE
T ss_pred ECCcchHHHHhccCCCCCCCeEEEECCCCcEEEE
Confidence 11 146789999999999999865
No 154
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=98.31 E-value=7.3e-07 Score=99.04 Aligned_cols=76 Identities=13% Similarity=0.246 Sum_probs=60.6
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH------hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003187 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL------NDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l------n~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G 203 (840)
.++.+.+++|+|||.|+++||+.|+.|..+ | .++++.+ +..++.++||.++.+++.+.| ++.|
T Consensus 14 ~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~--------~v~~ 82 (382)
T 2r2j_A 14 NIDEILNNADVALVNFYADWCRFSQMLHPI-F--EEASDVIKEEFPNENQVVFARVDCDQHSDIAQRY--------RISK 82 (382)
T ss_dssp THHHHHHHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTCC---CCEEEEEEETTTCHHHHHHT--------TCCE
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHHhhcCCCCceEEEEEECCccHHHHHhc--------CCCc
Confidence 344455678999999999999999999874 3 4677777 335899999999988877766 8999
Q ss_pred CCcEEEECCCCcee
Q 003187 204 WPLSVFLSPDLKPL 217 (840)
Q Consensus 204 ~P~~vfl~p~g~~~ 217 (840)
+|+++|+ .+|+++
T Consensus 83 ~Pt~~~f-~~G~~~ 95 (382)
T 2r2j_A 83 YPTLKLF-RNGMMM 95 (382)
T ss_dssp ESEEEEE-ETTEEE
T ss_pred CCEEEEE-eCCcEe
Confidence 9999987 477765
No 155
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=98.31 E-value=8.1e-07 Score=90.89 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=58.8
Q ss_pred hHHHHHHHHhcCCCE-EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI-~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
.++.++...+.++|+ ++.|+++||++|+.|... + .++++.. .++..++||.++.+++.+.| ++.|+|
T Consensus 124 ~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~-~--~~~~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~P 191 (229)
T 2ywm_A 124 SEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVM-A--WDFALAN-DYITSKVIDASENQDLAEQF--------QVVGVP 191 (229)
T ss_dssp CHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHH-H--HHHHHHC-TTEEEEEEEGGGCHHHHHHT--------TCCSSS
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHH-H--HHHHHHC-CCeEEEEEECCCCHHHHHHc--------CCcccC
Confidence 367777777788888 788999999999999742 2 2344333 37889999999888887766 899999
Q ss_pred cEEEECCCCce
Q 003187 206 LSVFLSPDLKP 216 (840)
Q Consensus 206 ~~vfl~p~g~~ 216 (840)
+++| +|++
T Consensus 192 t~~~---~G~~ 199 (229)
T 2ywm_A 192 KIVI---NKGV 199 (229)
T ss_dssp EEEE---GGGT
T ss_pred EEEE---CCEE
Confidence 9998 7874
No 156
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=98.31 E-value=6.1e-07 Score=98.35 Aligned_cols=79 Identities=19% Similarity=0.112 Sum_probs=64.3
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhc------ccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhc
Q 003187 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVE------SFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALY 199 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~e------tf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~ 199 (840)
.++-++.+.+++++++|.|+++||+ |+.|..+ +|+ ++++.+.. ++..++||.++.+++.+.|
T Consensus 17 ~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~--~~a~~~~~~~v~~~~Vd~~~~~~l~~~~-------- 85 (350)
T 1sji_A 17 TEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLE--LVAQVLEHKDIGFVMVDAKKEAKLAKKL-------- 85 (350)
T ss_dssp CHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHH--HHHHHGGGSSEEEEEEETTTTHHHHHHH--------
T ss_pred CHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHH--HHHHHHhhcCcEEEEEeCCCCHHHHHhc--------
Confidence 3566778878899999999999999 9776543 143 67888876 5999999999998887777
Q ss_pred CCCCCCcEEEECCCCcee
Q 003187 200 GGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 200 g~~G~P~~vfl~p~g~~~ 217 (840)
|+.|+||++|+ .+|++.
T Consensus 86 ~v~~~Pt~~~~-~~g~~~ 102 (350)
T 1sji_A 86 GFDEEGSLYVL-KGDRTI 102 (350)
T ss_dssp TCCSTTEEEEE-ETTEEE
T ss_pred CCCccceEEEE-ECCcEE
Confidence 89999999999 677754
No 157
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=98.28 E-value=5.7e-07 Score=85.58 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=50.1
Q ss_pred CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHH-----------------HHHHHhcCC
Q 003187 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM-----------------TYVQALYGG 201 (840)
Q Consensus 139 KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~-----------------~~~~~~~g~ 201 (840)
|||+|.|+++||+.|+.+.... .++.+.++=.||.|-+|-++.++..+.|. ..+....|+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l---~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 107 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGL---HRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKV 107 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHH---HHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSB
T ss_pred CeEEEEEEcccChhHHHHHHHH---HHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCC
Confidence 9999999999999999987533 33444442245555553233332222221 111223488
Q ss_pred CCCCcEEEECCCCceecc
Q 003187 202 GGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 202 ~G~P~~vfl~p~g~~~~~ 219 (840)
.++|+++++|++|+++..
T Consensus 108 ~~~P~~~lid~~G~i~~~ 125 (154)
T 3ia1_A 108 LGQPWTFVVDREGKVVAL 125 (154)
T ss_dssp CSSCEEEEECTTSEEEEE
T ss_pred CcccEEEEECCCCCEEEE
Confidence 899999999999998865
No 158
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=97.59 E-value=1.1e-07 Score=89.12 Aligned_cols=83 Identities=20% Similarity=0.144 Sum_probs=53.3
Q ss_pred hcCC-CEEEEEeccCChhhhhhhhcccCCHHHHHHH---hcCeEEEEEcCCCCccHHHHHH------------------H
Q 003187 136 KRDV-PIFLSIGYSTCHWCHVMEVESFEDEGVAKLL---NDWFVSIKVDREERPDVDKVYM------------------T 193 (840)
Q Consensus 136 ~e~K-pI~l~~g~~wC~wC~~me~etf~d~eVa~~l---n~~FV~vkvD~ee~pd~~~~y~------------------~ 193 (840)
-.+| +|+|.|+++||+.|+.+... + .++.+.+ ..++..|.|+.++.++..+.|. .
T Consensus 23 ~~gk~~vll~F~a~wC~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (143)
T 2lus_A 23 LKDKDIIGFYFSAHWCPPCRGFTPI-L--ADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASN 99 (143)
Confidence 4577 99999999999999988653 2 2344444 2355556665554332111111 1
Q ss_pred HHHHhcCCCCCCcEEEECCCCceeccccc
Q 003187 194 YVQALYGGGGWPLSVFLSPDLKPLMGGTY 222 (840)
Q Consensus 194 ~~~~~~g~~G~P~~vfl~p~g~~~~~~tY 222 (840)
..+ ..++.++|++++++++|+++...++
T Consensus 100 ~~~-~~~v~~~P~~~lid~~G~i~~~~~~ 127 (143)
T 2lus_A 100 VTA-KYGITGIPALVIVKKDGTLISMNGR 127 (143)
Confidence 112 2377899999999999999876433
No 159
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=98.24 E-value=1.6e-06 Score=80.27 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=59.7
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCcc----HHHHHHHHHHHhcCCC
Q 003187 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPD----VDKVYMTYVQALYGGG 202 (840)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd----~~~~y~~~~~~~~g~~ 202 (840)
..+-|+++.+++|||+|+|++.||+.|+.|.. .|+. +++ ..+.-.++||+++.++ +...| |+.
T Consensus 13 s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~-~~e~--~~~--~~~v~~~~vdVde~r~~Sn~IA~~~--------~V~ 79 (112)
T 3iv4_A 13 SIDQFEQVIEENKYVFVLKHSETCPISANAYD-QFNK--FLY--ERDMDGYYLIVQQERDLSDYIAKKT--------NVK 79 (112)
T ss_dssp SHHHHHHHHHHCSEEEEEEECTTCHHHHHHHH-HHHH--HHH--HHTCCEEEEEGGGGHHHHHHHHHHH--------TCC
T ss_pred CHHHHHHHHhcCCCEEEEEECCcCHhHHHHHH-HHHH--Hhc--cCCceEEEEEeecCchhhHHHHHHh--------CCc
Confidence 35668888778999999999999999999975 3322 222 2366677788887766 44444 888
Q ss_pred -CCCcEEEECCCCceeccc
Q 003187 203 -GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 203 -G~P~~vfl~p~g~~~~~~ 220 (840)
..|+.+++ .+|++++..
T Consensus 80 h~sPq~il~-k~G~~v~~~ 97 (112)
T 3iv4_A 80 HESPQAFYF-VNGEMVWNR 97 (112)
T ss_dssp CCSSEEEEE-ETTEEEEEE
T ss_pred cCCCeEEEE-ECCEEEEEe
Confidence 49999988 788988763
No 160
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.23 E-value=8.7e-07 Score=100.95 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=57.6
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003187 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (840)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~ 211 (840)
..+.+|+|+|.|+++||+.|+.|.... .++++.+.. +++.++||.+++ ++...| ++.|+|+++|+.
T Consensus 366 ~~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~v~~~~id~~~~-~~~~~~--------~v~~~Pt~~~~~ 433 (481)
T 3f8u_A 366 VNNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLSKDPNIVIAKMDATAN-DVPSPY--------EVRGFPTIYFSP 433 (481)
T ss_dssp HTCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTSS-CCCTTC--------CCCSSSEEEEEC
T ss_pred hhcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhccCCCEEEEEEECCch-hhHhhC--------CCcccCEEEEEe
Confidence 345699999999999999999998743 567777765 699999999876 555444 889999999999
Q ss_pred CCCc
Q 003187 212 PDLK 215 (840)
Q Consensus 212 p~g~ 215 (840)
++|+
T Consensus 434 ~~~~ 437 (481)
T 3f8u_A 434 ANKK 437 (481)
T ss_dssp TTCT
T ss_pred CCCe
Confidence 8887
No 161
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.23 E-value=1.7e-06 Score=99.23 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
-|+.+.++++++||.|+++||+.|+.|..+ | .++++.++. ++..++||.++.+++.+.| |+.|+|+++
T Consensus 23 ~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~ 91 (504)
T 2b5e_A 23 SFNEYIQSHDLVLAEFFAPWCGHCKNMAPE-Y--VKAAETLVEKNITLAQIDCTENQDLCMEH--------NIPGFPSLK 91 (504)
T ss_dssp THHHHHTTCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHhHHH-H--HHHHHHhccCCeEEEEEECCCCHHHHHhc--------CCCcCCEEE
Confidence 345555779999999999999999999874 3 577888876 4999999999988877766 999999999
Q ss_pred EECCCCc
Q 003187 209 FLSPDLK 215 (840)
Q Consensus 209 fl~p~g~ 215 (840)
|+.. |+
T Consensus 92 ~~~~-g~ 97 (504)
T 2b5e_A 92 IFKN-SD 97 (504)
T ss_dssp EEET-TC
T ss_pred EEeC-Cc
Confidence 9965 55
No 162
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=4.4e-06 Score=79.41 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=56.3
Q ss_pred cCCCEEEEEeccCChh--hhhhhhcccCCHHHHHHH-hc-CeEEEEEcCCCCccHHHHHHH-----------------HH
Q 003187 137 RDVPIFLSIGYSTCHW--CHVMEVESFEDEGVAKLL-ND-WFVSIKVDREERPDVDKVYMT-----------------YV 195 (840)
Q Consensus 137 e~KpI~l~~g~~wC~w--C~~me~etf~d~eVa~~l-n~-~FV~vkvD~ee~pd~~~~y~~-----------------~~ 195 (840)
.||+|+|.|+++||+. |+.+... + .++.+.+ .+ ++..|.|+.++.++.-+.|.+ .+
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~-l--~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 108 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSE-L--REIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV 108 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHH-H--HHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHH-H--HHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence 5899999999999999 9987642 2 2344444 33 477777777765533333321 12
Q ss_pred HHhcCCCCCCcEEEECCCCceeccc
Q 003187 196 QALYGGGGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 196 ~~~~g~~G~P~~vfl~p~g~~~~~~ 220 (840)
....|+.++|+++++|++|+++...
T Consensus 109 ~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 109 AKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp HHHTTCCSSSEEEEECTTSBEEEES
T ss_pred HHHcCCCccCeEEEECCCCEEEEcc
Confidence 2234889999999999999998763
No 163
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=98.19 E-value=4e-06 Score=78.97 Aligned_cols=78 Identities=6% Similarity=-0.060 Sum_probs=54.0
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc----CeEEEEEcCCCCccHHHHHHHH-----------------
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND----WFVSIKVDREERPDVDKVYMTY----------------- 194 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~----~FV~vkvD~ee~pd~~~~y~~~----------------- 194 (840)
-.||+|+|.|+++||+.|+.+. |.+.++.++ ++..|-|+.++.++.-+.+.+.
T Consensus 30 ~~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 103 (143)
T 4fo5_A 30 QLGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKES 103 (143)
T ss_dssp SSCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGS
T ss_pred hCCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccch
Confidence 3589999999999999999875 445554442 4777777776544322222111
Q ss_pred -HHHhcCCCCCCcEEEECCCCceecc
Q 003187 195 -VQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 195 -~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+...+|+.++|++++++++|+++..
T Consensus 104 ~~~~~~~v~~~P~~~lid~~G~i~~~ 129 (143)
T 4fo5_A 104 ELYKKYDLRKGFKNFLINDEGVIIAA 129 (143)
T ss_dssp HHHHHTTGGGCCCEEEECTTSBEEEE
T ss_pred HHHHHcCCCCCCcEEEECCCCEEEEc
Confidence 1122477899999999999999875
No 164
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=98.17 E-value=3.1e-06 Score=77.08 Aligned_cols=76 Identities=14% Similarity=0.317 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~v 208 (840)
+.++...+ +++|++ |+++||++|+.+.. +.+.+...|..|.||.++... .. ...+...+|+.++|++
T Consensus 11 ~~~~~~~~-~~~vv~-f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~--~~-~~~l~~~~~v~~~Pt~- 77 (116)
T 2e7p_A 11 KKAKELAS-SAPVVV-FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGS--QL-QSALAHWTGRGTVPNV- 77 (116)
T ss_dssp HHHHHHHT-SSSEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHH--HH-HHHHHHHHSCCSSCEE-
T ss_pred HHHHHHHc-CCCEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChH--HH-HHHHHHHhCCCCcCEE-
Confidence 44444444 568887 99999999999864 223345678888888775421 11 1111122389999999
Q ss_pred EECCCCceecc
Q 003187 209 FLSPDLKPLMG 219 (840)
Q Consensus 209 fl~p~g~~~~~ 219 (840)
|+ +|+.+.+
T Consensus 78 ~~--~g~~v~~ 86 (116)
T 2e7p_A 78 FI--GGKQIGG 86 (116)
T ss_dssp EE--TTEEEEC
T ss_pred EE--CCEEECC
Confidence 55 6777754
No 165
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=98.17 E-value=2.2e-06 Score=85.86 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=59.8
Q ss_pred hcCCCEEEEEec-------cCChhhhhhhhcccCCHHHHHHHh-----cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003187 136 KRDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLN-----DWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 136 ~e~KpI~l~~g~-------~wC~wC~~me~etf~d~eVa~~ln-----~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G 203 (840)
..+.||+|+|++ .||+.|+.|.. +| .+|++.+. .+.+.+|||.++.|++.+.| |+.+
T Consensus 35 ~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P-~~--e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~--------~I~s 103 (178)
T 3ga4_A 35 VPGYFNILYITMRGTNSNGMSCQLCHDFEK-TY--HAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDL--------KLQN 103 (178)
T ss_dssp CTTCEEEEEEECCSBCTTSCBCHHHHHHHH-HH--HHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHT--------TCCS
T ss_pred cCCCcEEEEEeCCCCCCCCCCChhHHHHHH-HH--HHHHHHhhhccCCCCEEEEEEECccCHHHHHHc--------CCCC
Confidence 457899999999 49999999986 33 56676665 57889999999999998877 9999
Q ss_pred CCcEEEECCCCcee
Q 003187 204 WPLSVFLSPDLKPL 217 (840)
Q Consensus 204 ~P~~vfl~p~g~~~ 217 (840)
.|+.+++-+.+.+-
T Consensus 104 iPtl~~F~~g~~~~ 117 (178)
T 3ga4_A 104 VPHLVVYPPAESNK 117 (178)
T ss_dssp SCEEEEECCCCGGG
T ss_pred CCEEEEEcCCCCCC
Confidence 99999999987765
No 166
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=98.16 E-value=4.1e-06 Score=82.79 Aligned_cols=81 Identities=9% Similarity=0.063 Sum_probs=52.1
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC-------CccHHHHHHH--------------H
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-------RPDVDKVYMT--------------Y 194 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee-------~pd~~~~y~~--------------~ 194 (840)
-.+|+|+|.|+++||+.|+.+... + .++.+.+.+.+..|.|+.+. .++..+.|.+ .
T Consensus 31 ~~gk~vlv~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~ 107 (188)
T 2cvb_A 31 FHEPLLAVVFMCNHCPYVKGSIGE-L--VALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQE 107 (188)
T ss_dssp CCSSEEEEEEECSSCHHHHTTHHH-H--HHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSH
T ss_pred hCCCEEEEEEECCCCccHHHHHHH-H--HHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcch
Confidence 358999999999999999976532 2 23344443336666676632 2221122211 0
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003187 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 195 ~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+....|+.++|+++|+|++|++++.
T Consensus 108 ~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 108 VAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp HHHHTTCCEESEEEEECTTCBEEEE
T ss_pred HHHHcCCCCCCeEEEECCCCcEEEE
Confidence 1122488899999999999999887
No 167
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.11 E-value=1.1e-05 Score=79.56 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=52.7
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCC-ccHHHHHHHHHHH---------------h
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVYMTYVQA---------------L 198 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~-pd~~~~y~~~~~~---------------~ 198 (840)
-.||+|+|.|+++||+.|+.+.... .++.+.+. +++..|.|+.+.. ++..+.|.+.... .
T Consensus 58 ~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 134 (186)
T 1jfu_A 58 FRGKTLLVNLWATWCVPCRKEMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQD 134 (186)
T ss_dssp GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHH
T ss_pred cCCCEEEEEEEeCCCHhHHHHHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHH
Confidence 3689999999999999999876532 34555555 4566666666532 2322333221100 0
Q ss_pred cCC----CCCCcEEEECCCCceecc
Q 003187 199 YGG----GGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 199 ~g~----~G~P~~vfl~p~g~~~~~ 219 (840)
.+. .++|+++++|++|+++..
T Consensus 135 ~~~~~~~~~~P~~~lid~~G~i~~~ 159 (186)
T 1jfu_A 135 LKAIGRALGMPTSVLVDPQGCEIAT 159 (186)
T ss_dssp HHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred hccccccCCCCEEEEECCCCCEEEE
Confidence 011 389999999999999865
No 168
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=98.10 E-value=1.6e-06 Score=91.04 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=53.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
.+|+|+|.|+++||+.|+.|... | .++++... ++..++||.++ +++...| ++.++||++|+. +|++
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~-l--~~La~~~~-~v~f~kVd~d~-~~l~~~~--------~I~~~PTll~~~-~G~~ 197 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSS-L--ICLAAEYP-MVKFCKIKASN-TGAGDRF--------SSDVLPTLLVYK-GGEL 197 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHH-H--HHHHHHCT-TSEEEEEEHHH-HCCTTSS--------CTTTCSEEEEEE-TTEE
T ss_pred CCCEEEEEEECCCChHHHHHHHH-H--HHHHHHCC-CCEEEEEeCCc-HHHHHHC--------CCCCCCEEEEEE-CCEE
Confidence 48999999999999999999763 3 33555443 58889999875 5554444 889999999886 8988
Q ss_pred ecc
Q 003187 217 LMG 219 (840)
Q Consensus 217 ~~~ 219 (840)
+..
T Consensus 198 v~~ 200 (245)
T 1a0r_P 198 LSN 200 (245)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 169
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=98.09 E-value=5.8e-06 Score=95.88 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=58.4
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCC--CccHHHHHHHHHHHhcCCCCCCcEEE
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVF 209 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee--~pd~~~~y~~~~~~~~g~~G~P~~vf 209 (840)
.+.+|+|+|.|+++||+.|+.|.... .++++.+.. .+..++||.++ .+++.+.| ++.|+|+++|
T Consensus 27 ~~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~--------~V~~~PTl~~ 95 (519)
T 3t58_A 27 LGSSSAWAVEFFASWCGHAIAFAPTW---KELANDVKDWRPALNLAVLDCAEETNSAVCREF--------NIAGFPTVRF 95 (519)
T ss_dssp SSCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHT--------TCCSBSEEEE
T ss_pred HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhhCcCCcEEEEEEECCccccHHHHHHc--------CCcccCEEEE
Confidence 45679999999999999999998743 667777776 79999999854 56666555 8999999999
Q ss_pred ECC---CCcee
Q 003187 210 LSP---DLKPL 217 (840)
Q Consensus 210 l~p---~g~~~ 217 (840)
+++ +|+++
T Consensus 96 f~~g~~~G~~~ 106 (519)
T 3t58_A 96 FQAFTKNGSGA 106 (519)
T ss_dssp ECTTCCSCCCE
T ss_pred EcCcccCCCce
Confidence 998 66643
No 170
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=98.07 E-value=2.4e-06 Score=97.48 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=57.0
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--------CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--------WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--------~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
..+|||+|.|+++||+.|+.|.... .++++.+.. .++.++||.++.+++.+.| ++.++|++
T Consensus 40 ~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y--------~V~~~PTl 108 (470)
T 3qcp_A 40 APLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKY--------DINFVPRL 108 (470)
T ss_dssp GGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHT--------TCCSSCEE
T ss_pred CCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHc--------CCCccCeE
Confidence 4579999999999999999998633 456665541 4899999999998887766 89999999
Q ss_pred EEECCCCc
Q 003187 208 VFLSPDLK 215 (840)
Q Consensus 208 vfl~p~g~ 215 (840)
+|++++|.
T Consensus 109 ilf~~gg~ 116 (470)
T 3qcp_A 109 FFFYPRDS 116 (470)
T ss_dssp EEEEESSC
T ss_pred EEEECCCc
Confidence 99987764
No 171
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=98.06 E-value=1.3e-05 Score=79.54 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=51.2
Q ss_pred cCC-CEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-------CccHHHHHHH--------------
Q 003187 137 RDV-PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMT-------------- 193 (840)
Q Consensus 137 e~K-pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-------~pd~~~~y~~-------------- 193 (840)
.+| ||+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+. .++..+.|.+
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~ 120 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQHE-L--VRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQ 120 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHHHH-H--HHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHH-H--HHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCch
Confidence 577 59999999999999976542 2 223444433 47777776632 2221122211
Q ss_pred HHHHhcCCCCCCcEEEECCCCceeccc
Q 003187 194 YVQALYGGGGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 194 ~~~~~~g~~G~P~~vfl~p~g~~~~~~ 220 (840)
.+....++.++|+++|+|++|++++.+
T Consensus 121 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 147 (196)
T 2ywi_A 121 EVAKAYDAACTPDFYIFDRDLKCVYRG 147 (196)
T ss_dssp HHHHHHTCCEESEEEEEETTCBEEEEE
T ss_pred HHHHHhCCCCCCeEEEEcCCCeEEEcc
Confidence 011123788999999999999998763
No 172
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=98.05 E-value=5.5e-06 Score=73.20 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=44.0
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~ 218 (840)
++.|+++||++|+.|+. . .+.+...+ ..+||+++.|++...| |+. +|+.++ .+|+++.
T Consensus 3 vv~f~a~~C~~C~~~~~-~------L~~~~~~~-~~~vdid~~~~l~~~~--------g~~-vPtl~~--~~G~~v~ 60 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVE-A------LAQARAGA-FFSVFIDDDAALESAY--------GLR-VPVLRD--PMGRELD 60 (87)
T ss_dssp EEEEECSSCHHHHHHHH-H------HHHTTCCC-EEEEECTTCHHHHHHH--------TTT-CSEEEC--TTCCEEE
T ss_pred EEEEECCCCchHHHHHH-H------HHHHHHhh-eEEEECCCCHHHHHHh--------CCC-cCeEEE--ECCEEEe
Confidence 56799999999999874 1 22333332 4789999999887766 776 999887 7899885
No 173
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.05 E-value=3.9e-06 Score=95.54 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=62.0
Q ss_pred HHHHHHhcC---CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 130 AFAEARKRD---VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 130 Al~~Ak~e~---KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
-+..+-+++ ++++|.|+++||+.|+.|..+. .++++.+...+..++||.++.+++.+.| |+.|+|+
T Consensus 10 ~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 78 (481)
T 3f8u_A 10 NFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLKGIVPLAKVDCTANTNTCNKY--------GVSGYPT 78 (481)
T ss_dssp THHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCCEEEEETTTCHHHHHHT--------TCCEESE
T ss_pred HHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhcCceEEEEEECCCCHHHHHhc--------CCCCCCE
Confidence 344444555 9999999999999999998743 6788888777889999999998887776 8999999
Q ss_pred EEEECCCCcee
Q 003187 207 SVFLSPDLKPL 217 (840)
Q Consensus 207 ~vfl~p~g~~~ 217 (840)
++|+ .+|+.+
T Consensus 79 l~~~-~~g~~~ 88 (481)
T 3f8u_A 79 LKIF-RDGEEA 88 (481)
T ss_dssp EEEE-ETTEEE
T ss_pred EEEE-eCCcee
Confidence 9888 567654
No 174
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.04 E-value=7.8e-06 Score=93.78 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=54.4
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~ 211 (840)
...+|||+|.|+++||+.|+.|.... .++++.+. .+++.++||.+..+.. . | ++.|+||++|+
T Consensus 373 ~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~--------~v~~~Pt~~~~- 438 (504)
T 2b5e_A 373 NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHTENDVR-G-V--------VIEGYPTIVLY- 438 (504)
T ss_dssp HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGGGCCCS-S-C--------CCSSSSEEEEE-
T ss_pred ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCCccccc-c-C--------CceecCeEEEE-
Confidence 56799999999999999999998743 35666554 3799999999876543 2 4 88999999999
Q ss_pred CCCce
Q 003187 212 PDLKP 216 (840)
Q Consensus 212 p~g~~ 216 (840)
++|+.
T Consensus 439 ~~G~~ 443 (504)
T 2b5e_A 439 PGGKK 443 (504)
T ss_dssp CCTTS
T ss_pred eCCce
Confidence 78865
No 175
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=98.03 E-value=5.9e-06 Score=91.41 Aligned_cols=78 Identities=15% Similarity=-0.061 Sum_probs=58.6
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhccc---CCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESF---EDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf---~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
|+.+.+++++|+|.|+++||+.|..+.+-.+ .-..+++.+.. ++..++||.++.+++.+.| |+.|+||
T Consensus 23 f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~--------~V~~~PT 94 (367)
T 3us3_A 23 YKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKL--------GLTEEDS 94 (367)
T ss_dssp HHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHH--------TCCSTTE
T ss_pred HHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHc--------CCCcCce
Confidence 4444466899999999999998744331111 12346666655 5999999999999988877 9999999
Q ss_pred EEEECCCCcee
Q 003187 207 SVFLSPDLKPL 217 (840)
Q Consensus 207 ~vfl~p~g~~~ 217 (840)
++|+. +|+++
T Consensus 95 l~~f~-~G~~~ 104 (367)
T 3us3_A 95 IYVFK-EDEVI 104 (367)
T ss_dssp EEEEE-TTEEE
T ss_pred EEEEE-CCcEE
Confidence 99997 57775
No 176
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=98.02 E-value=9.4e-06 Score=84.72 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=56.8
Q ss_pred HHHHHHHHhc-CCCEEEEEeccCChhhhhhhhcccCCHHHHHHH---h-cCeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003187 128 EEAFAEARKR-DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL---N-DWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (840)
Q Consensus 128 ~eAl~~Ak~e-~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l---n-~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~ 202 (840)
++.++..++. ++++++.|+++||++|+.+... + .+++... + .++..++||.++.+++.+.| ++.
T Consensus 127 ~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~-l--~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~V~ 195 (243)
T 2hls_A 127 DATKEALKSLKGRVHIETIITPSCPYCPYAVLL-A--HMFAYEAWKQGNPVILSEAVEAYENPDIADKY--------GVM 195 (243)
T ss_dssp HHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHH-H--HHHHHHHHHTTCCCEEEEEEETTTCHHHHHHT--------TCC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHH-H--HHHHHHcccccCCcEEEEEEECccCHHHHHHc--------CCe
Confidence 4455555444 5566888999999999998753 3 2344444 1 47888999999988877666 899
Q ss_pred CCCcEEEECCCCceec
Q 003187 203 GWPLSVFLSPDLKPLM 218 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~ 218 (840)
|+|+++| +|++++
T Consensus 196 ~vPt~~i---~G~~~~ 208 (243)
T 2hls_A 196 SVPSIAI---NGYLVF 208 (243)
T ss_dssp SSSEEEE---TTEEEE
T ss_pred eeCeEEE---CCEEEE
Confidence 9999988 788764
No 177
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=98.00 E-value=9.7e-06 Score=89.55 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-----CccHHHHHH-------------
Q 003187 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-----RPDVDKVYM------------- 192 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-----~pd~~~~y~------------- 192 (840)
..+.-.+|+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++ .++..+.|.
T Consensus 76 sLsdl~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~ 152 (352)
T 2hyx_A 76 DLKSLRGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDN 152 (352)
T ss_dssp CGGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECT
T ss_pred cHHHhCCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCC
Confidence 33444699999999999999999886532 245555543 68888887643 222222221
Q ss_pred --HHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 193 --TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 193 --~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
...+ ..++.++|+++|+|++|+++..
T Consensus 153 ~~~l~~-~ygV~~~Pt~~lID~~G~Iv~~ 180 (352)
T 2hyx_A 153 NYATWT-NYRNRYWPAEYLIDATGTVRHI 180 (352)
T ss_dssp TSHHHH-HTTCCEESEEEEECTTSBEEEE
T ss_pred cHHHHH-HcCCCccCEEEEEeCCCeEEEE
Confidence 1122 2488899999999999999875
No 178
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=97.97 E-value=1.6e-05 Score=76.81 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=51.4
Q ss_pred cCCCEEEEEeccCChh-hhhhhhcccCCHHHHHHHh-----cCeEEEEEcCCC---CccHHHHHH---------------
Q 003187 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLN-----DWFVSIKVDREE---RPDVDKVYM--------------- 192 (840)
Q Consensus 137 e~KpI~l~~g~~wC~w-C~~me~etf~d~eVa~~ln-----~~FV~vkvD~ee---~pd~~~~y~--------------- 192 (840)
.||+|+|.|+++||+. |..+... + .++.+.+. +++..|-|..+. .++..+.|.
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~-l--~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 101 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEK-L--VQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTK 101 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHH-H--HHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHH-H--HHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 4899999999999998 9987542 2 24555553 355555555442 233222232
Q ss_pred ---HHHHHhcCCCCCC---------------cEEEECCCCceecc
Q 003187 193 ---TYVQALYGGGGWP---------------LSVFLSPDLKPLMG 219 (840)
Q Consensus 193 ---~~~~~~~g~~G~P---------------~~vfl~p~g~~~~~ 219 (840)
...+ ..|+.+.| +++++|++|+++..
T Consensus 102 ~~~~~~~-~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 145 (171)
T 2rli_A 102 QVAQASH-SYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY 145 (171)
T ss_dssp HHHHHHH-HSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred HHHHHHH-HhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence 1222 24777777 89999999999875
No 179
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=97.96 E-value=2.8e-05 Score=75.04 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=52.5
Q ss_pred cCCC-EEEEEe-ccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH--------------HHHHhc
Q 003187 137 RDVP-IFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQALY 199 (840)
Q Consensus 137 e~Kp-I~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~--------------~~~~~~ 199 (840)
.||+ |+|.|+ ++||+.|..+.... .++.+.+.+ ++..|-|+.+. ++..+.|.+ .+....
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTREASAF---RDNWDLLKDYDVVVIGVSSDD-INSHKRFKEKYKLPFILVSDPDKKIRELY 102 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHHHHHHH---HHTHHHHHTTCEEEEEEESCC-HHHHHHHHHHTTCCSEEEECTTSHHHHHT
T ss_pred cCCCCEEEEEEcCCCCCchHHHHHHH---HHHHHHHHHcCCEEEEEeCCC-HHHHHHHHHHhCCCceEEECCcHHHHHHc
Confidence 4787 999999 99999999876532 233444443 46666676653 332222221 111224
Q ss_pred CCCC----CCcEEEECCCCceeccc
Q 003187 200 GGGG----WPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 200 g~~G----~P~~vfl~p~g~~~~~~ 220 (840)
|+.| .|+++++|++|++++..
T Consensus 103 ~v~~~~~~~P~~~lid~~G~i~~~~ 127 (161)
T 3drn_A 103 GAKGFILPARITFVIDKKGIIRHIY 127 (161)
T ss_dssp TCCCSSSCCCEEEEECTTSBEEEEE
T ss_pred CCCCcCcccceEEEECCCCEEEEEE
Confidence 7778 99999999999998653
No 180
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=97.93 E-value=2.6e-05 Score=79.66 Aligned_cols=81 Identities=12% Similarity=0.217 Sum_probs=52.3
Q ss_pred cCCC-EEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC-------CCccHHHHHHH--------------
Q 003187 137 RDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-------ERPDVDKVYMT-------------- 193 (840)
Q Consensus 137 e~Kp-I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e-------e~pd~~~~y~~-------------- 193 (840)
.+|+ |+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+ +.++..+.|.+
T Consensus 57 ~gk~~vll~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~ 133 (218)
T 3u5r_E 57 KDSPALLVAFISNRCPFVVLIREA-L--AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQ 133 (218)
T ss_dssp TTCSEEEEEECCSSCHHHHTTHHH-H--HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTC
T ss_pred CCCCeEEEEEECCCCccHHHHHHH-H--HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCcc
Confidence 4786 9999999999999876542 2 334444443 3677777663 12222222211
Q ss_pred HHHHhcCCCCCCcEEEECCCCceeccc
Q 003187 194 YVQALYGGGGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 194 ~~~~~~g~~G~P~~vfl~p~g~~~~~~ 220 (840)
.+....|+.++|+++++|++|++++.+
T Consensus 134 ~~~~~~~v~~~P~~~liD~~G~i~~~g 160 (218)
T 3u5r_E 134 SVAKAYGAACTPDFFLYDRERRLVYHG 160 (218)
T ss_dssp HHHHHHTCCEESEEEEECTTCBEEEEE
T ss_pred HHHHHcCCCCCCeEEEECCCCcEEEec
Confidence 011223888999999999999998764
No 181
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=97.91 E-value=2.8e-06 Score=87.53 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
+|+|+|.|+++||+.|+.|... | .++++.+ .++..++||.+ .+++...| ++.++|+++|+. +|+++
T Consensus 120 ~k~vvV~F~a~wC~~C~~l~p~-l--~~la~~~-~~v~f~~vd~~-~~~l~~~~--------~i~~~PTl~~~~-~G~~v 185 (217)
T 2trc_P 120 VTTIVVNIYEDGVRGCDALNSS-L--ECLAAEY-PMVKFCKIRAS-NTGAGDRF--------SSDVLPTLLVYK-GGELI 185 (217)
T ss_dssp TCEEEEEEECTTSTTHHHHHHH-H--HHHHTTC-TTSEEEEEEHH-HHTCSTTS--------CGGGCSEEEEEE-TTEEE
T ss_pred CcEEEEEEECCCCccHHHHHHH-H--HHHHHHC-CCeEEEEEECC-cHHHHHHC--------CCCCCCEEEEEE-CCEEE
Confidence 4999999999999999999752 2 2333333 25788899887 56655444 788999999995 89887
Q ss_pred cc
Q 003187 218 MG 219 (840)
Q Consensus 218 ~~ 219 (840)
..
T Consensus 186 ~~ 187 (217)
T 2trc_P 186 SN 187 (217)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 182
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=97.91 E-value=7.9e-06 Score=78.29 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=51.6
Q ss_pred cCCCEEEEEeccCChh-hhhhhhcccCCHHHHHHHhc-----CeEEEEEcCCC---CccHHHHHH---------------
Q 003187 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLND-----WFVSIKVDREE---RPDVDKVYM--------------- 192 (840)
Q Consensus 137 e~KpI~l~~g~~wC~w-C~~me~etf~d~eVa~~ln~-----~FV~vkvD~ee---~pd~~~~y~--------------- 192 (840)
.||+|+|.|+++||+. |..+... + .++.+.+.+ ++..|-|..+. .|+..+.|.
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~-l--~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d 98 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEK-M--IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTRE 98 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHH-H--HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHH-H--HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 4899999999999998 9987542 2 344555543 55555555443 233222232
Q ss_pred ---HHHHHhcCCCCCC---------------cEEEECCCCceecc
Q 003187 193 ---TYVQALYGGGGWP---------------LSVFLSPDLKPLMG 219 (840)
Q Consensus 193 ---~~~~~~~g~~G~P---------------~~vfl~p~g~~~~~ 219 (840)
...+ ..|+.+.| ++++++++|+++..
T Consensus 99 ~~~~~~~-~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 142 (164)
T 2ggt_A 99 EVDQVAR-AYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 142 (164)
T ss_dssp HHHHHHH-TTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred HHHHHHH-hcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence 1222 34777889 89999999999865
No 183
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.91 E-value=1.3e-05 Score=97.09 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=65.2
Q ss_pred HHHHH-HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~-~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.+. ...+.+|||+|.|+++||+.|+.|.... .++++.+..+++.++||.++.+++.+.| |+.|+|+
T Consensus 664 ~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 732 (780)
T 3apo_A 664 PQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIKGKVRAGKVDCQAYPQTCQKA--------GIKAYPS 732 (780)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCceEEEEECCCCHHHHHhc--------CCCcCCE
Confidence 45554 4667899999999999999999987643 5677777668999999999988877665 8999999
Q ss_pred EEEECCCCceec
Q 003187 207 SVFLSPDLKPLM 218 (840)
Q Consensus 207 ~vfl~p~g~~~~ 218 (840)
++|+ ++|+.+.
T Consensus 733 ~~~~-~~g~~~~ 743 (780)
T 3apo_A 733 VKLY-QYERAKK 743 (780)
T ss_dssp EEEE-EEETTTT
T ss_pred EEEE-cCCCccc
Confidence 9999 8888764
No 184
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.89 E-value=1.3e-05 Score=96.89 Aligned_cols=80 Identities=11% Similarity=0.060 Sum_probs=60.9
Q ss_pred chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003187 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (840)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P 205 (840)
-..+.++.+.+++++++|.|+++||+.|+.|..+. .++++.+...+..++||.++.+++.+.| |+.|+|
T Consensus 121 l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~P 189 (780)
T 3apo_A 121 LERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVDGLLRIGAVNCGDDRMLCRMK--------GVNSYP 189 (780)
T ss_dssp CCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCSSCC----------------C
T ss_pred echHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhcCceEEEEEeCCCcHHHHHHc--------CCceee
Confidence 34677888889999999999999999999998743 5778888777999999999999988777 888999
Q ss_pred cEEEECCCCcee
Q 003187 206 LSVFLSPDLKPL 217 (840)
Q Consensus 206 ~~vfl~p~g~~~ 217 (840)
+++|+ .+|+.+
T Consensus 190 t~~~~-~~g~~~ 200 (780)
T 3apo_A 190 SLFIF-RSGMAA 200 (780)
T ss_dssp EEEEE-CTTSCC
T ss_pred eEEEE-eCCcEe
Confidence 98888 566653
No 185
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=97.88 E-value=8.8e-06 Score=89.05 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=54.1
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p 212 (840)
..++|+++|.|+++||++|+.|.... .++++.+.. +++.++||.+..+. +.| ++.|+|+++|+..
T Consensus 264 ~~~~k~~lv~f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~~~~~--~~~--------~v~~~Pt~~~~~~ 330 (361)
T 3uem_A 264 FDEKKNVFVEFYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDSTANEV--EAV--------KVHSFPTLKFFPA 330 (361)
T ss_dssp TCTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTTCBC--SSC--------CCCSSSEEEEECS
T ss_pred ccCCCcEEEEEecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECCccch--hhc--------CCcccCeEEEEEC
Confidence 46799999999999999999998633 456666765 49999999987762 223 8999999999976
Q ss_pred C-Cc
Q 003187 213 D-LK 215 (840)
Q Consensus 213 ~-g~ 215 (840)
+ |+
T Consensus 331 ~~~~ 334 (361)
T 3uem_A 331 SADR 334 (361)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 5 44
No 186
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=97.87 E-value=3.9e-05 Score=76.31 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=51.1
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-------CccHHHHHH-HHH------------
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYM-TYV------------ 195 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-------~pd~~~~y~-~~~------------ 195 (840)
.||+|+|.|+++||+.|..+... + .++.+.+.+ ++..|.|+.++ .++..+.|. +..
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~-l--~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~ 123 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYET-A--TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINV 123 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBS
T ss_pred CCCEEEEEEecCCCCccHHHHHH-H--HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeeccc
Confidence 58999999999999999775432 2 234444443 47777776552 222223333 110
Q ss_pred -------------HHhcCCCCCC------cEEEECCCCceecc
Q 003187 196 -------------QALYGGGGWP------LSVFLSPDLKPLMG 219 (840)
Q Consensus 196 -------------~~~~g~~G~P------~~vfl~p~g~~~~~ 219 (840)
....++.|.| ++++++++|+++..
T Consensus 124 ~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 124 NGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp SSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred CcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence 0112667888 99999999999875
No 187
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=97.87 E-value=0.00052 Score=77.18 Aligned_cols=270 Identities=11% Similarity=0.092 Sum_probs=151.5
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhH----HHhhhh
Q 003187 379 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYV----EDILGE 453 (840)
Q Consensus 379 LYD-NA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~----~~vLg~ 453 (840)
+|+ .+-++.+|+..|++++|+.|++.|.++++.+.+.+.+..-+|+. |.-|..|+ ...+++
T Consensus 73 lY~G~~Gia~~l~~l~~~t~d~~yl~~a~~~l~~~~~~l~~~~~~~~~--------------G~aG~l~~l~~ly~~~g~ 138 (411)
T 3e6u_A 73 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLC--------------GDAGPLAVAAVLYHKMNN 138 (411)
T ss_dssp SSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCSCCCCTTT--------------STHHHHHHHHHHHHHTTC
T ss_pred eeeChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccCCcccc--------------CcHHHHHHHHHHHHHhCC
Confidence 455 78889999999999999999999999999998876543223332 45577777 344553
Q ss_pred h--H-HHHHHHhCc---cCCCCcCCCCCCCCCCccCCcc-eeeccCCchHHHHhcC---CCHHHHHHHHHHHHHHHHh-h
Q 003187 454 H--A-ILFKEHYYL---KPTGNCDLSRMSDPHNEFKGKN-VLIELNDSSASASKLG---MPLEKYLNILGECRRKLFD-V 522 (840)
Q Consensus 454 ~--~-~~~~~~y~v---~~~Gn~~~~~~~d~~g~~eg~n-vL~~~~~~~~~a~~~g---~~~e~l~~~l~~~r~kL~~-~ 522 (840)
. + +.+.+.-.. ..+.+ .+.+-|.. ++.. .-.+.+..+ +....+.+..+.+.+.... .
T Consensus 139 ~~~a~~~~~~l~~~~~~~~~~~---------~dll~G~AG~l~a---Ll~L~~~~~~~~~~~~~i~~i~~~ii~~g~~~~ 206 (411)
T 3e6u_A 139 EKQAEDCITRLIHLNKIDPHAP---------NEMLYGRIGYIYA---LLFVNKNFGVEKIPQSHIQQICETILTSGENLA 206 (411)
T ss_dssp HHHHHHHHHHHHGGGGGCTTCC---------SSTTTSHHHHHHH---HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCC---------hhhhcCcHHHHHH---HHHHHHHcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 2 1 122222121 11111 11122321 1100 001111122 1111122222222221111 1
Q ss_pred hcCC---CCCC---CcchhhhcH---HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcccc
Q 003187 523 RSKR---PRPH---LDDKVIVSW---NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDE 593 (840)
Q Consensus 523 R~~R---~~P~---~DdKiltsW---Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~ 593 (840)
+.++ ..|. -.++..++| .+=++.+|+++++.+++ +++++.++++.+++.+....
T Consensus 207 ~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~Ll~~~~~~~~----------------~~~~~~i~~~l~~l~~~~~~- 269 (411)
T 3e6u_A 207 RKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQ----------------GKLHSLVKPSVDYVCQLKFP- 269 (411)
T ss_dssp HHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHHTCGGGCCCH----------------HHHHHTHHHHHHHHHHTCCT-
T ss_pred HhccccCCCCcceeecCccCCcccccHHHHHHHHHHHHhhcCh----------------HHHHHHHHHHHHHHHHhhcc-
Confidence 1111 2221 012222222 12225677777777766 78999999999999987653
Q ss_pred CCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccc
Q 003187 594 QTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 673 (840)
Q Consensus 594 ~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k 673 (840)
+|.+.....++......+...-+=.+.+++.++++++|++|++.|++..+.+.+. | +.. .
T Consensus 270 -~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~------g-~~~---~--------- 329 (411)
T 3e6u_A 270 -SGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQY------G-LLK---K--------- 329 (411)
T ss_dssp -TSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------C-SBT---T---------
T ss_pred -CCCCCCCCCcccCccccccCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------C-ccC---C---------
Confidence 3433211112222334566777888999999999999999999999887766542 1 100 0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 003187 674 EDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVF 717 (840)
Q Consensus 674 ~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~ 717 (840)
+...=-|.+=.+..|+++++.|++ ++|+++|.+++..+
T Consensus 330 ---~~~lChG~aG~~~~ll~~~~~t~~---~~~~~~A~~~~~~~ 367 (411)
T 3e6u_A 330 ---GYGLCHGSAGNAYAFLTLYNLTQD---MKYLYRACKFAEWC 367 (411)
T ss_dssp ---CSCSTTSHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred ---CCceecChHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 112234566667789999999986 88999998776553
No 188
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=97.86 E-value=2.8e-05 Score=73.23 Aligned_cols=76 Identities=7% Similarity=0.010 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC--CCc
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG--WPL 206 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G--~P~ 206 (840)
+-+++.-+.++||+|+|+++ |..|+.|.. +| .++|+.+...+..++||.++.|++.+.| |+.+ .|+
T Consensus 14 ~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p-~l--~~~A~~~~gk~~f~~vd~d~~~~~a~~~--------gi~~~~iPt 81 (133)
T 2djk_A 14 ETYSDYMSAGIPLAYIFAET-AEERKELSD-KL--KPIAEAQRGVINFGTIDAKAFGAHAGNL--------NLKTDKFPA 81 (133)
T ss_dssp HHHHHHHHTTSCEEEEECSC-SSSHHHHHH-HH--HHHHHSSTTTSEEEEECTTTTGGGTTTT--------TCCSSSSSE
T ss_pred HHHHHHhcCCCCEEEEEecC-hhhHHHHHH-HH--HHHHHHhCCeEEEEEEchHHhHHHHHHc--------CCCcccCCE
Confidence 44444456789999999999 899998765 44 4567766667999999999999887666 8888 999
Q ss_pred EEEECC-CCce
Q 003187 207 SVFLSP-DLKP 216 (840)
Q Consensus 207 ~vfl~p-~g~~ 216 (840)
.+++.. +|+.
T Consensus 82 l~i~~~~~g~~ 92 (133)
T 2djk_A 82 FAIQEVAKNQK 92 (133)
T ss_dssp EEEECTTTCCB
T ss_pred EEEEecCcCcc
Confidence 999985 6666
No 189
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=97.86 E-value=5.1e-05 Score=73.02 Aligned_cols=80 Identities=9% Similarity=0.053 Sum_probs=50.2
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-------CccHHHHHHH-HH------------
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMT-YV------------ 195 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-------~pd~~~~y~~-~~------------ 195 (840)
.||+|+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+. .++..+.|.+ ..
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAE-M--NQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDV 107 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBS
T ss_pred CCCEEEEEEEeccCCccHHHHHH-H--HHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeecc
Confidence 58999999999999999886542 2 234444443 47777776542 2222222322 10
Q ss_pred ---------HH----hcCC--CCCC---cEEEECCCCceecc
Q 003187 196 ---------QA----LYGG--GGWP---LSVFLSPDLKPLMG 219 (840)
Q Consensus 196 ---------~~----~~g~--~G~P---~~vfl~p~g~~~~~ 219 (840)
+. ..|+ .+.| +++++|++|+++..
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~ 149 (170)
T 2p5q_A 108 NGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR 149 (170)
T ss_dssp SSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred CCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence 00 0133 5678 99999999999875
No 190
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=97.82 E-value=2.6e-05 Score=75.97 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=47.8
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC-------CCccHHHHHH----------------
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-------ERPDVDKVYM---------------- 192 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e-------e~pd~~~~y~---------------- 192 (840)
.||+|+|.|+++||+.|+ +.. .+ .++.+.+.+ ++..|.|+.+ +.++..+.|.
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~-~l--~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~ 106 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYK-EL--EALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDV 106 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHH-HH--HHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBS
T ss_pred CCCEEEEEEEecCCCcch-hHH-HH--HHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccC
Confidence 589999999999999999 432 22 234444443 4667666542 1122112222
Q ss_pred ----------HHHHHhcCCCCCC------cEEEECCCCceecc
Q 003187 193 ----------TYVQALYGGGGWP------LSVFLSPDLKPLMG 219 (840)
Q Consensus 193 ----------~~~~~~~g~~G~P------~~vfl~p~g~~~~~ 219 (840)
.......|+.|+| +++++|++|+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 149 (171)
T 3cmi_A 107 NGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER 149 (171)
T ss_dssp SSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred CCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence 1111124678899 99999999999875
No 191
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=97.80 E-value=7.3e-05 Score=86.92 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=64.0
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeec---CCCCCCCCCc
Q 003187 537 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR---NGPSKAPGFL 613 (840)
Q Consensus 537 tsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~---~g~~~~~~~l 613 (840)
|++++.++.|||.|++++++- +..| ..++|+.|+++++|+.++... ++.... .|.-...++.
T Consensus 242 t~~~~~~AAalA~as~vf~~~--D~~y--------A~~~L~~A~~~~~fa~~~~~~-----~~~~~~~~~~~~Y~~~~~~ 306 (537)
T 3gzk_A 242 YAATATFCAAMAHAALVYRPF--DPAL--------SSCCADAARRAYAWLGAHEMQ-----PFHNPDGILTGEYGDAELR 306 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHTSCCC-----CCCCCTTCCSCCCCCSCCH
T ss_pred CcHHHHHHHHHHHHHHhhccc--CHHH--------HHHHHHHHHHHHHHHHhcccc-----cccCCcccccCCcCCCccc
Confidence 568999999999999999861 1112 167999999999999987431 110000 0000113455
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003187 614 DDYAFLISGLLDLYEFGSGTKWLVWAIELQN 644 (840)
Q Consensus 614 eDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~ 644 (840)
++ +++|.++||++|||+.||+.|+++..
T Consensus 307 De---l~wAA~~Ly~aTgd~~Yl~~a~~~~~ 334 (537)
T 3gzk_A 307 DE---LLWASCALLRMTGDSAWARVCEPLLD 334 (537)
T ss_dssp HH---HHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred hH---HHHHHHHHHHHhCCHHHHHHHHHhhh
Confidence 55 78999999999999999999998764
No 192
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=97.75 E-value=0.00016 Score=81.87 Aligned_cols=240 Identities=17% Similarity=0.165 Sum_probs=137.2
Q ss_pred CCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHH---HHHcc-CChHHHHHHHHHHHHHHHhccCCCCceEeec-cCCc
Q 003187 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DADS 431 (840)
Q Consensus 357 v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~---Ay~~t-gd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~-DADs 431 (840)
+-||+| |..=++-+---|-|....|+|+|.+ +|... +-+..++.++-.++||++ |+.++|+||.-. |.+.
T Consensus 48 l~GGwy----DAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~~~~~d~ldeikwg~D~llk-~~~~~g~~y~qVgd~~~ 122 (433)
T 1ks8_A 48 LTGGYF----DAGDFVKFGFPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIK-AHTSQNEFYGQVGQGDA 122 (433)
T ss_dssp CCCSBC----CSSSCCEEHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHH-HCCBTTBEEEEESCHHH
T ss_pred CCCcee----ECCCCCeeccchHHHHHHHHHHHHHhHHhhhcCCchHHHHHHHHHHHHHHHH-hccCCCcEEEEeCCCCc
Confidence 667777 4443455555688888888888877 34433 358899999999999998 777788888643 1111
Q ss_pred ccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHH
Q 003187 432 AETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 511 (840)
Q Consensus 432 ~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~ 511 (840)
. . ..|+. ++ .+. ..+.+..+.
T Consensus 123 D----------h----------------~~w~~-Pe------~~~------~~R~~y~~~-------------------- 143 (433)
T 1ks8_A 123 D----------H----------------AFWGR-PE------DMT------MARPAYKID-------------------- 143 (433)
T ss_dssp H----------H----------------TCCSC-GG------GCC------SCCCEEEEC--------------------
T ss_pred C----------C----------------cccCC-Hh------hCC------CCCceeecc--------------------
Confidence 0 0 00010 00 000 001111000
Q ss_pred HHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 003187 512 LGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 591 (840)
Q Consensus 512 l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~ 591 (840)
..+|. |+-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++-
T Consensus 144 --------------~~~pg------s~~a~~~AAalA~as~vfk~~--D~~y--------A~~~L~~A~~~~~fa~~~~- 192 (433)
T 1ks8_A 144 --------------TSRPG------SDLAGETAAALAAASIVFRNV--DGTY--------SNNLLTHARQLFDFANNYR- 192 (433)
T ss_dssp --------------SSSCC------HHHHHHHHHHHHHHHHHTTTT--CHHH--------HHHHHHHHHHHHHHHHHSC-
T ss_pred --------------CCCCc------cHHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHCC-
Confidence 01222 334588999999999999752 1122 2679999999999998762
Q ss_pred ccCCCeEEEeecCCCC--CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccc
Q 003187 592 DEQTHRLQHSFRNGPS--KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVL 669 (840)
Q Consensus 592 d~~~G~l~~~~~~g~~--~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~ 669 (840)
|.+.....++.. ...++.+ .+++|.++||.+|||..|++.|++....+.. ....++|.+
T Consensus 193 ----~~y~~~~~~~~~~Y~ss~~~D---E~~WAAa~Ly~aTgd~~Yl~~~~~~~~~~~~---~~~~~~~~W--------- 253 (433)
T 1ks8_A 193 ----GKYSDSITDARNFYASADYRD---ELVWAAAWLYRATNDNTYLNTAESLYDEFGL---QNWGGGLNW--------- 253 (433)
T ss_dssp ----CCHHHHSGGGGGTSCCCCTHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHTTG---GGSCCCCCS---------
T ss_pred ----CcccCCCCcCCCCCCCCCccc---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc---CcCcCCcCc---------
Confidence 111000000000 1123333 4588999999999999999999986543211 001112222
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 003187 670 LRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 727 (840)
Q Consensus 670 ~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~ 727 (840)
|+. . +...+.|+.+++. ..|++.++..+..+...+...|.+
T Consensus 254 -------d~~-----~--~g~~~lla~~~~~---~~~~~~~~~~~~~~~~~~~~tp~G 294 (433)
T 1ks8_A 254 -------DSK-----V--SGVQVLLAKLTNK---QAYKDTVQSYVNYLINNQQKTPKG 294 (433)
T ss_dssp -------SCC-----H--HHHHHHHHHHHCC---HHHHHHHHHHHHHHHHTSCBCTTS
T ss_pred -------cch-----h--hHHHHHHhhccCh---HHHHHHHHHHHHHHHhcCCcCCCC
Confidence 111 0 1122335666654 678888888777776655445544
No 193
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=97.74 E-value=1.2e-05 Score=75.06 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=50.1
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
++||+|+|+++||..|+.|.. .| .++++... +...+|||.++.+ ..| ++.+.||++++- +|+++
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p-~l--~~la~~~~-~v~f~kvd~d~~~---~~~--------~v~~~PT~~~fk-~G~~v 86 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQ-HL--SLLARKFP-ETKFVKAIVNSCI---QHY--------HDNCLPTIFVYK-NGQIE 86 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHH-HH--HHHHHHCT-TSEEEEEEGGGTS---TTC--------CGGGCSEEEEEE-TTEEE
T ss_pred CCeEEEEEeCCCChHHHHHHH-HH--HHHHHHCC-CCEEEEEEhHHhH---HHC--------CCCCCCEEEEEE-CCEEE
Confidence 459999999999999999985 33 24555443 5778899998652 223 788999999885 78887
Q ss_pred ccc
Q 003187 218 MGG 220 (840)
Q Consensus 218 ~~~ 220 (840)
...
T Consensus 87 ~~~ 89 (118)
T 3evi_A 87 AKF 89 (118)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 194
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=97.74 E-value=8.1e-05 Score=73.26 Aligned_cols=80 Identities=8% Similarity=0.063 Sum_probs=49.6
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-------CccHHHHHHHH-HHH---------h
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMTY-VQA---------L 198 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-------~pd~~~~y~~~-~~~---------~ 198 (840)
.||+|+|.|+++||+.|..+-.. + .++.+.+.+ ++..|-|..+. .++.-+.|.+. ... .
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~-l--~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~ 113 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLG-L--KELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKI 113 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCC
T ss_pred CCCEEEEEEEecCCCCcHHHHHH-H--HHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeec
Confidence 58999999999999999986542 2 334444443 47777775432 22222223222 000 0
Q ss_pred c-------------CCCCCCc----EEEECCCCceecc
Q 003187 199 Y-------------GGGGWPL----SVFLSPDLKPLMG 219 (840)
Q Consensus 199 ~-------------g~~G~P~----~vfl~p~g~~~~~ 219 (840)
. ..++.|+ ++++|++|+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~ 151 (180)
T 3kij_A 114 LGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 151 (180)
T ss_dssp SSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEE
T ss_pred cCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEE
Confidence 0 1235788 9999999999865
No 195
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.72 E-value=5.4e-05 Score=75.64 Aligned_cols=80 Identities=6% Similarity=-0.096 Sum_probs=50.9
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHH------------------HH
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY------------------VQ 196 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~------------------~~ 196 (840)
.||+|+|.|+ ++||+.|+.+.... .++.+.+.+ ++..|.|+.+. ++..+.|.+. +.
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 119 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAF---SKLNDEFEDRDAQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELS 119 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHH---HHTHHHHHTTTEEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHH
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHH---HHHHHHHHHCCCEEEEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHH
Confidence 4899999999 99999999865422 123334433 56666666553 2211222111 11
Q ss_pred HhcCCC-----CCCcEEEECCCCceeccc
Q 003187 197 ALYGGG-----GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 197 ~~~g~~-----G~P~~vfl~p~g~~~~~~ 220 (840)
..+|+. ++|+++++|++|++++..
T Consensus 120 ~~~~v~~~~g~~~P~~~lid~~G~i~~~~ 148 (195)
T 2bmx_A 120 QAAGVLNADGVADRVTFIVDPNNEIQFVS 148 (195)
T ss_dssp HHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred HHhCCcccCCCccceEEEEcCCCeEEEEE
Confidence 123666 899999999999998763
No 196
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=97.70 E-value=1.6e-05 Score=67.99 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=42.4
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~e-e~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
++.|+++||++|+.|... +.+++++ .|..++||.+ +.+++.+.| |+.+.|++++ +|+.+
T Consensus 4 ~~~f~~~~C~~C~~~~~~------l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------gv~~vPt~~i---~g~~~ 66 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQA------VANAIDPSKYTVEIVHLGTDKARIAEAEKA--------GVKSVPALVI---DGAAF 66 (80)
T ss_dssp EEEEEECSCHHHHHHHHH------HHHHSCTTTEEEEEEETTTCSSTHHHHHHH--------TCCEEEEEEE---TTEEE
T ss_pred eEEEeCCCCCchHHHHHH------HHHHHHhcCCeEEEEEecCChhhHHHHHHc--------CCCcCCEEEE---CCEEE
Confidence 445889999999999852 3344443 4777777765 455554444 8899999877 88876
Q ss_pred cc
Q 003187 218 MG 219 (840)
Q Consensus 218 ~~ 219 (840)
+.
T Consensus 67 ~~ 68 (80)
T 2k8s_A 67 HI 68 (80)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 197
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=97.69 E-value=9.2e-05 Score=70.82 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=55.6
Q ss_pred cCC-CEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH----------------HHHH
Q 003187 137 RDV-PIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT----------------YVQA 197 (840)
Q Consensus 137 e~K-pI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~----------------~~~~ 197 (840)
.|| +|+|.|+ ++||+.|+.+-.. ++ ++.+.+. +++..|-|+.+. ++..+.|.+ .+..
T Consensus 34 ~gk~~vvl~F~~a~~C~~C~~~~~~-l~--~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 109 (160)
T 1xvw_A 34 RGAKNVLLVFFPLAFTGICQGELDQ-LR--DHLPEFENDDSAALAISVGP-PPTHKIWATQSGFTFPLLSDFWPHGAVSQ 109 (160)
T ss_dssp TTTCEEEEEECSCTTSSHHHHHHHH-HH--HTGGGTSSSSEEEEEEESCC-HHHHHHHHHHHTCCSCEEECTTTTTHHHH
T ss_pred cCCCCEEEEEECCCCCCchHHHHHH-HH--HHHHHHHHCCcEEEEEeCCC-HHHHHHHHHhcCCCceEEecCCcChHHHH
Confidence 466 9999997 9999999876532 11 1222222 245666665543 221111210 0111
Q ss_pred hcCCC----CCC--cEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHH
Q 003187 198 LYGGG----GWP--LSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 198 ~~g~~----G~P--~~vfl~p~g~~~~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
..|+. |+| +++++|++|++++.. +..+.+ +.+.++++.|.
T Consensus 110 ~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~-----~~~~~l~~~l~ 156 (160)
T 1xvw_A 110 AYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEV-----RDQRLWTDALA 156 (160)
T ss_dssp HTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCC-----CCHHHHHHHHH
T ss_pred HcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCC-----CCHHHHHHHHH
Confidence 23665 899 999999999998753 333322 34666666554
No 198
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=97.69 E-value=0.00015 Score=69.69 Aligned_cols=43 Identities=7% Similarity=-0.061 Sum_probs=29.7
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e 182 (840)
.||+|+|.|+++||+.|..+-. .+ .++.+.+.+ ++..|.|+.+
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~-~l--~~l~~~~~~~~~~vv~v~~d 73 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYR-QL--QEMHTRLVGKGLRILAFPCN 73 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HH--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEeeccCCchHHHHH-HH--HHHHHHhhcCCeEEEEEECC
Confidence 5899999999999999987543 22 234444443 4777777654
No 199
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=97.64 E-value=8.1e-05 Score=73.62 Aligned_cols=78 Identities=9% Similarity=-0.078 Sum_probs=50.5
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH-------------------HH
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT-------------------YV 195 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~-------------------~~ 195 (840)
.||+++|.|+ ++||+.|+.+.. .++ ++.+.+.+ ++..|.|+.+. ++..+.|.+ ..
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~-~l~--~~~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 105 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELE-DVQ--KEYAELKKLGVEVYSVSTDT-HFVHKAWHENSPAVGSIEYIMIGDPSQTIS 105 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHH-HHH--HHHHHHHHTTEEEEEEESSC-HHHHHHHHHSCHHHHTCCSEEEECTTCHHH
T ss_pred CCCCEEEEEECCCCCcchHHHHH-HHH--HHHHHHHHcCCEEEEEECCC-HHHHHHHHHHhccccCCCceEEECCchHHH
Confidence 5899999999 999999997654 222 23444433 56666666653 221122211 11
Q ss_pred HHhcCCC------CCCcEEEECCCCceecc
Q 003187 196 QALYGGG------GWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 196 ~~~~g~~------G~P~~vfl~p~g~~~~~ 219 (840)
+ ..|+. ++|+++++|++|++++.
T Consensus 106 ~-~~~v~~~~~g~~~P~~~lid~~G~i~~~ 134 (187)
T 1we0_A 106 R-QFDVLNEETGLADRGTFIIDPDGVIQAI 134 (187)
T ss_dssp H-HTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred H-HhCCCcCCCCceeeEEEEECCCCeEEEE
Confidence 2 23665 89999999999999875
No 200
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=97.64 E-value=0.0002 Score=72.99 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=50.2
Q ss_pred hcCCCEEEEEeccC--ChhhhhhhhcccCCHHHHHHH--hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003187 136 KRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (840)
Q Consensus 136 ~e~KpI~l~~g~~w--C~wC~~me~etf~d~eVa~~l--n~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~ 211 (840)
+..+||+|.+++++ |+||..+..-.=+=.++++.+ ......++||.++.+++.+.| |+.|+|+++|+.
T Consensus 18 ~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Ptl~~~~ 89 (229)
T 2ywm_A 18 EFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKY--------GVDRVPTIVIEG 89 (229)
T ss_dssp HCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHT--------TCCBSSEEEEES
T ss_pred hccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHc--------CCCcCcEEEEEC
Confidence 56789988888654 777776654221223344444 567888999999999988877 999999999996
No 201
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=97.63 E-value=4.5e-05 Score=70.08 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=46.7
Q ss_pred CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003187 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (840)
Q Consensus 139 KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~ 218 (840)
.++++.|+++||++|+.++. .+ .++++-. .+-..+||+++.|++...| |+. +|+.+++. +|+++.
T Consensus 29 m~~vv~y~~~~C~~C~~a~~-~L--~~l~~e~--~i~~~~vDId~d~~l~~~y--------gv~-VP~l~~~~-dG~~v~ 93 (107)
T 2fgx_A 29 PRKLVVYGREGCHLCEEMIA-SL--RVLQKKS--WFELEVINIDGNEHLTRLY--------NDR-VPVLFAVN-EDKELC 93 (107)
T ss_dssp CCCEEEEECSSCHHHHHHHH-HH--HHHHHHS--CCCCEEEETTTCHHHHHHS--------TTS-CSEEEETT-TTEEEE
T ss_pred ccEEEEEeCCCChhHHHHHH-HH--HHHHHhc--CCeEEEEECCCCHHHHHHh--------CCC-CceEEEEE-CCEEEE
Confidence 36788999999999999875 22 1222222 3667788999888876655 665 99987654 688774
Q ss_pred c
Q 003187 219 G 219 (840)
Q Consensus 219 ~ 219 (840)
.
T Consensus 94 ~ 94 (107)
T 2fgx_A 94 H 94 (107)
T ss_dssp C
T ss_pred e
Confidence 3
No 202
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=97.62 E-value=9.5e-05 Score=77.75 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=52.5
Q ss_pred HHHHHhcCCCEEEEEe--ccCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCC-----CccHHHHHHHHHHHhcC
Q 003187 131 FAEARKRDVPIFLSIG--YSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREE-----RPDVDKVYMTYVQALYG 200 (840)
Q Consensus 131 l~~Ak~e~KpI~l~~g--~~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee-----~pd~~~~y~~~~~~~~g 200 (840)
|......+++|||.|+ ++||+ |.. +| .++++.+. .+++.++||.++ .+++.+.| +
T Consensus 26 F~~vi~~~~~vlV~Fy~~ApWCg----l~P-~~--e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~--------~ 90 (248)
T 2c0g_A 26 FEKTVERFPYSVVKFDIASPYGE----KHE-AF--TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY--------K 90 (248)
T ss_dssp HHHHHTTSSEEEEEEEESSCCSH----HHH-HH--HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT--------T
T ss_pred HHHHHhcCCCEEEEEECCCCCCc----cHH-HH--HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh--------C
Confidence 3334467899999999 99998 543 33 45666663 479999999887 77877766 8
Q ss_pred CC--CCCcEEEECCCCc
Q 003187 201 GG--GWPLSVFLSPDLK 215 (840)
Q Consensus 201 ~~--G~P~~vfl~p~g~ 215 (840)
+. |+||++|+. |+
T Consensus 91 V~~~~~PTl~~F~--G~ 105 (248)
T 2c0g_A 91 VDDKNFPSIFLFK--GN 105 (248)
T ss_dssp CCTTSCCEEEEES--SS
T ss_pred CCcCCCCeEEEEe--CC
Confidence 99 999999997 66
No 203
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=97.60 E-value=0.00071 Score=76.82 Aligned_cols=181 Identities=13% Similarity=0.090 Sum_probs=110.6
Q ss_pred CCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH---HHccC-ChHHHHHHHHHHHHHHHhccCCCCceEeec-cCCc
Q 003187 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDA---FSLTK-DVFYSYICRDILDYLRRDMIGPGGEIFSAE-DADS 431 (840)
Q Consensus 357 v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~A---y~~tg-d~~y~~~A~~t~~fl~r~m~~~~Ggfysa~-DADs 431 (840)
+-||+| |..=.+-+---|-|....|+++|.+. |..++ -+..++.++-.++||++ |...+|+||.-. |.++
T Consensus 50 l~GGwy----DAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~g~~~d~ldeikwg~D~llk-~~~~~~~~y~qVgd~~~ 124 (441)
T 1ia6_A 50 LTGGYH----DAGDHVKFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLK-SHPNSTTFYYQVGEGNA 124 (441)
T ss_dssp CCCSBC----CSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHH-TCCSTTCEEEEESCHHH
T ss_pred CCCCee----eCCCCCeeccchHHHHHHHHHHHHHhHHHHhhcCcHHHHHHHHHHHHHHHHH-hccCCCcEEEEeCCCCc
Confidence 668888 44444555556888888999888874 44444 47889999999999998 555557788643 1111
Q ss_pred ccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHH
Q 003187 432 AETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 511 (840)
Q Consensus 432 ~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~ 511 (840)
. .. .|+. +..+ +
T Consensus 125 D----------h~----------------~w~~---------Pe~~-----~---------------------------- 136 (441)
T 1ia6_A 125 D----------HT----------------YWGA---------PEEQ-----T---------------------------- 136 (441)
T ss_dssp H----------TT----------------CCSC---------GGGC-----C----------------------------
T ss_pred c----------cc----------------ccCC---------hhhC-----C----------------------------
Confidence 0 00 0000 0000 0
Q ss_pred HHHHHHHHHhhhcCCCCCC-Cc-chhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Q 003187 512 LGECRRKLFDVRSKRPRPH-LD-DKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH 589 (840)
Q Consensus 512 l~~~r~kL~~~R~~R~~P~-~D-dKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~ 589 (840)
..|+.++ ++ ..--|+..+.++.|||.|++++++. +..| ..++|+.|+++++|..++
T Consensus 137 ------------~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vfk~~--D~~y--------A~~~L~~A~~~~~fa~~~ 194 (441)
T 1ia6_A 137 ------------GQRPSLYKADPSSPASDILSETSAALTLMYLNYKNI--DSAY--------ATKCLNAAKELYAMGKAN 194 (441)
T ss_dssp ------------SCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHS
T ss_pred ------------CCCceeeEeCCCCCccHHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHc
Confidence 0111100 00 0112455689999999999999751 1122 267999999999999886
Q ss_pred ccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003187 590 LYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 643 (840)
Q Consensus 590 l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~ 643 (840)
--....+++| ...++.+ .+++|.++||.+|||..|++.|++..
T Consensus 195 ~g~~~~~~~Y--------~ss~~~D---E~~WAAa~Ly~aTgd~~Yl~~a~~~~ 237 (441)
T 1ia6_A 195 QGVGNGQSFY--------QATSFGD---DLAWAATWLYTATNDSTYITDAEQFI 237 (441)
T ss_dssp CSCCCCTTTS--------CCCCSHH---HHHHHHHHHHHHHCCTHHHHHHHHHT
T ss_pred CCCCCCCCCC--------CCCCchh---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3111111111 1123334 45689999999999999999998754
No 204
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=97.59 E-value=6.4e-05 Score=74.66 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=28.6
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcC
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDR 181 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ 181 (840)
.||+|+|.|+++||+.|..+-.. + .++.+.+.+ ++..|-|..
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~p~-l--~~l~~~~~~~~~~vi~is~ 87 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGYET-A--TTLYNKYKSQGFTVLAFPS 87 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHHHH-H--HHHHHHHGGGTCEEEEEEB
T ss_pred CCCEEEEEEecCCCCCcHHHHHH-H--HHHHHHhhhCCeEEEEEEC
Confidence 58999999999999999986531 1 233444433 466666644
No 205
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.57 E-value=0.00016 Score=73.30 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=49.6
Q ss_pred cCCCEEEEEecc-CChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC--CccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 137 RDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 137 e~KpI~l~~g~~-wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee--~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
+++.+++.|+++ ||++|+.|... + .++++. ..++..++||.++ .+++.+.| |+.++|+++|+. +
T Consensus 21 ~~~v~lv~f~~~~~C~~C~~~~~~-~--~~la~~-~~~v~~~~vd~~~~~~~~~~~~~--------~v~~~Pt~~~~~-~ 87 (226)
T 1a8l_A 21 VNPVKLIVFVRKDHCQYCDQLKQL-V--QELSEL-TDKLSYEIVDFDTPEGKELAKRY--------RIDRAPATTITQ-D 87 (226)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHHH-H--HHHHTT-CTTEEEEEEETTSHHHHHHHHHT--------TCCSSSEEEEEE-T
T ss_pred CCCeEEEEEecCCCCchhHHHHHH-H--HHHHhh-CCceEEEEEeCCCcccHHHHHHc--------CCCcCceEEEEc-C
Confidence 344456889999 99999999863 3 235543 4578889999987 77776655 899999999984 4
Q ss_pred Cc
Q 003187 214 LK 215 (840)
Q Consensus 214 g~ 215 (840)
|+
T Consensus 88 g~ 89 (226)
T 1a8l_A 88 GK 89 (226)
T ss_dssp TB
T ss_pred Cc
Confidence 54
No 206
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=97.56 E-value=0.00015 Score=70.08 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=54.5
Q ss_pred cCCCEEEEEeccC-ChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccH---------------HH-HHHHHHHHhc
Q 003187 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV---------------DK-VYMTYVQALY 199 (840)
Q Consensus 137 e~KpI~l~~g~~w-C~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~---------------~~-~y~~~~~~~~ 199 (840)
.||+++|.|+++| |+.|+.+.. .+ .++.+.+ +++..|-|+.+....+ .. .-.+..+. .
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~~-~l--~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~ 117 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQTR-RF--NEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEA-F 117 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTHH-HH--HHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHH-T
T ss_pred CCCeEEEEEecCCCCCchHHHHH-HH--HHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHH-h
Confidence 4899999999999 999998653 22 1233333 4555555544321100 00 00011122 2
Q ss_pred CCCC------CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003187 200 GGGG------WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 200 g~~G------~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
|+.+ .|+++++|++|++++.....+.. ..+.+.++++.|.+
T Consensus 118 ~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~---~~~~~~~l~~~l~~ 164 (167)
T 2jsy_A 118 GVYIKELRLLARSVFVLDENGKVVYAEYVSEAT---NHPNYEKPIEAAKA 164 (167)
T ss_dssp TCBBTTTCSBCCEEEEECTTSCEEEEEECSBTT---SCCCSHHHHHHHHH
T ss_pred CCccccCCceeeEEEEEcCCCcEEEEEecCCcC---CCCCHHHHHHHHHH
Confidence 5444 49999999999998763211111 12345566665554
No 207
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=97.52 E-value=0.0001 Score=71.28 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=48.3
Q ss_pred cCCCEEEEEeccCCh-hhhhhhhcccCCHHHHHHHhc---CeEEEEEcCC---CCccHHHHHHHH---------------
Q 003187 137 RDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLND---WFVSIKVDRE---ERPDVDKVYMTY--------------- 194 (840)
Q Consensus 137 e~KpI~l~~g~~wC~-wC~~me~etf~d~eVa~~ln~---~FV~vkvD~e---e~pd~~~~y~~~--------------- 194 (840)
.||+|+|.|+++||+ .|..+..+. .++.+.+.+ ++..|-|+.+ +.++..+.|.+.
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~ 108 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHM---TDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYS 108 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHH---HHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSC
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHH---HHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCC
Confidence 589999999999999 998754421 334444443 2555555554 122222222110
Q ss_pred ---HHHh---------------cCCCCCCcEEEECCCCceecc
Q 003187 195 ---VQAL---------------YGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 195 ---~~~~---------------~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.+.+ .+..+.|+++++|++|+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 151 (174)
T 1xzo_A 109 QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 151 (174)
T ss_dssp HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence 0110 134568999999999999865
No 208
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=97.51 E-value=0.0001 Score=73.69 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=50.6
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH---------------------
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~--------------------- 193 (840)
.||+|+|.|+ ++||+.|+.+... ++ ++.+.+. +++..|.|+.+. ++..+.|.+
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~-l~--~l~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIA-FD--KRVKDFHEKGFNVIGVSIDS-EQVHFAWKNTPVEKGGIGQVSFPMVADITK 107 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHH-HH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCCCSSCEEECTTS
T ss_pred CCCcEEEEEECCCCCCchHHHHHH-HH--HHHHHHHHcCCEEEEEECCC-HHHHHHHHHhhhhcccccCceeEEEECCch
Confidence 5899999999 9999999876542 21 2233332 356666666553 221121211
Q ss_pred HHHHhcCCC-----CCCcEEEECCCCceeccc
Q 003187 194 YVQALYGGG-----GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 194 ~~~~~~g~~-----G~P~~vfl~p~g~~~~~~ 220 (840)
.+....|+. ++|+++++|++|+++...
T Consensus 108 ~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~ 139 (198)
T 1zof_A 108 SISRDYDVLFEEAIALRGAFLIDKNMKVRHAV 139 (198)
T ss_dssp HHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred HHHHHhCCcccCCcccceEEEECCCCEEEEEE
Confidence 111223666 899999999999998763
No 209
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=97.50 E-value=0.00036 Score=70.94 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=30.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCC
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~e 182 (840)
.||+|+|.|+++||+.|+.+-. .+ .++.+.+. +.+..|-|+.+
T Consensus 46 ~Gk~vlv~FwatwC~~C~~e~p-~l--~~l~~~~~~~g~~vv~v~~d 89 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVRDYT-QM--NELQRRLGPRGLVVLGFPCN 89 (208)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HH--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEECCCCccHHHHHH-HH--HHHHHHccCCCeEEEEEECC
Confidence 5899999999999999998433 22 23444443 35777777664
No 210
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=97.49 E-value=0.00013 Score=65.60 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=41.9
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC--CCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e--e~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
.++|+++.|+++||++|+.+.. .++. +.+.+-..+||++ +.+++...| | .+.|++ |. +|
T Consensus 14 ~~~~~v~~f~~~~C~~C~~~~~-~L~~------l~~~i~~~~vdi~~~~~~el~~~~--------g-~~vP~l-~~--~g 74 (100)
T 1wjk_A 14 RALPVLTLFTKAPCPLCDEAKE-VLQP------YKDRFILQEVDITLPENSTWYERY--------K-FDIPVF-HL--NG 74 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHH-HTST------TSSSSEEEEEETTSSTTHHHHHHS--------S-SSCSEE-EE--SS
T ss_pred CCCCEEEEEeCCCCcchHHHHH-HHHH------hhhCCeEEEEECCCcchHHHHHHH--------C-CCCCEE-EE--CC
Confidence 4678899999999999999975 3441 1123566677877 444444333 7 899965 44 56
Q ss_pred cee
Q 003187 215 KPL 217 (840)
Q Consensus 215 ~~~ 217 (840)
+.+
T Consensus 75 ~~~ 77 (100)
T 1wjk_A 75 QFL 77 (100)
T ss_dssp SEE
T ss_pred EEE
Confidence 664
No 211
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=97.48 E-value=7.4e-05 Score=73.69 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=49.6
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-------CccHHHHHHHH-HH----------
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMTY-VQ---------- 196 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-------~pd~~~~y~~~-~~---------- 196 (840)
-.||+|+|.|+++||+.|+.+-.. + .++.+.+.+ .+..|.|+.++ .++..+.|.+. ..
T Consensus 47 ~~Gk~vlv~F~atwC~~C~~~~p~-l--~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d 123 (181)
T 2p31_A 47 YRGSVSLVVNVASECGFTDQHYRA-L--QQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIA 123 (181)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCC
T ss_pred cCCCEEEEEEeccCCCCcHHHHHH-H--HHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecc
Confidence 358999999999999999975442 2 234444443 47777776542 22222223221 00
Q ss_pred --------H-hcCCCCCC-------cEEEECCCCceecc
Q 003187 197 --------A-LYGGGGWP-------LSVFLSPDLKPLMG 219 (840)
Q Consensus 197 --------~-~~g~~G~P-------~~vfl~p~g~~~~~ 219 (840)
. ..++.++| +++++|++|+++..
T Consensus 124 ~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~ 162 (181)
T 2p31_A 124 VTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGA 162 (181)
T ss_dssp CSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred cCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEE
Confidence 0 00123578 99999999999865
No 212
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=97.48 E-value=4.8e-05 Score=73.35 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=48.2
Q ss_pred cCCCEEEEEeccCChh-hhhhhhcccCCHHHHHHHhc----CeEEEEEcCCC---CccHHHHHH----------------
Q 003187 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLND----WFVSIKVDREE---RPDVDKVYM---------------- 192 (840)
Q Consensus 137 e~KpI~l~~g~~wC~w-C~~me~etf~d~eVa~~ln~----~FV~vkvD~ee---~pd~~~~y~---------------- 192 (840)
.+|+|+|.|+++||+. |+.+... + .++.+.+.+ ++..|.|+.+. .++..+.|.
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~~~-l--~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~ 110 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTLLA-L--KRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEA 110 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHH-H--HHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHH-H--HHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHH
Confidence 5899999999999997 9986531 1 122222321 46666666553 233333332
Q ss_pred --HHHHHh--------------cCCCCCCcEEEECCCCceecc
Q 003187 193 --TYVQAL--------------YGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 193 --~~~~~~--------------~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+..+.+ .++.++|++++++ +|+++..
T Consensus 111 ~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~ 152 (172)
T 2k6v_A 111 VREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLL 152 (172)
T ss_dssp HHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEE
T ss_pred HHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEE
Confidence 122222 1235789999999 9998765
No 213
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=97.45 E-value=3.1e-05 Score=83.30 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcC----CCCccHHHHHHHHHHHhcCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR----EERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~----ee~pd~~~~y~~~~~~~~g~~G 203 (840)
+.+++.|+.-++..++.|+++||+.|+.|+. .|++- + +.+-.|++|. +++|++.+.| ++.|
T Consensus 187 ~~~~~la~~l~~~~vV~F~A~WC~~Ck~l~p-~le~l--A----~~l~~Vd~d~~d~~~~~~~la~~~--------gI~~ 251 (291)
T 3kp9_A 187 PLAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LFGAA--F----DQVPYVECSPNGPGTPQAQECTEA--------GITS 251 (291)
T ss_dssp STHHHHHHHHHHTTCEEEECTTCHHHHHHHH-HHGGG--G----GGSCEEESCSSCSSSCCCHHHHTT--------TCCS
T ss_pred HHHHHHHHHhCCCCEEEEECCCCHHHHHHHH-HHHHH--H----HHcCEEEEeecCchhhHHHHHHHc--------CCcc
Confidence 3455555555555578899999999999975 45442 2 2233455553 3367776655 8999
Q ss_pred CCcEEEECCCCceec
Q 003187 204 WPLSVFLSPDLKPLM 218 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~ 218 (840)
+||.++ +|+++.
T Consensus 252 vPT~~i---~G~~~~ 263 (291)
T 3kp9_A 252 YPTWII---NGRTYT 263 (291)
T ss_dssp TTEEEE---TTEEEE
T ss_pred cCeEEE---CCEEec
Confidence 999554 788643
No 214
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=97.44 E-value=0.00015 Score=71.36 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=29.8
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e 182 (840)
.||+|+|.|+++||+.|..+... + .++.+.+.+ ++..|.|+.+
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~~-l--~~l~~~~~~~~v~vv~vs~d 89 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYTQ-L--VDLHARYAECGLRILAFPCN 89 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEeCCCCCCcHHHHHH-H--HHHHHHHhcCCeEEEEEECC
Confidence 58999999999999999876532 2 234444443 4777777654
No 215
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=97.43 E-value=0.00018 Score=73.68 Aligned_cols=79 Identities=10% Similarity=-0.002 Sum_probs=49.5
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHH----------------------H
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVY----------------------M 192 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y----------------------~ 192 (840)
.+|+|+|.|+ ++||+.|..+.. .|+ ++.+.+. +++..|-|..+...+. +.| .
T Consensus 55 ~Gk~vll~F~pa~~Cp~C~~~~~-~l~--~l~~~~~~~~v~vv~Is~D~~~~~-~~~~~~~~~~~g~~~~~fp~l~D~~~ 130 (220)
T 1zye_A 55 KGKYLVLFFYPLDFTFVCPTEII-AFS--DKASEFHDVNCEVVAVSVDSHFSH-LAWINTPRKNGGLGHMNIALLSDLTK 130 (220)
T ss_dssp TTSEEEEEECSCTTCSSSHHHHH-HHH--HHHHHHHHTTEEEEEEESSCHHHH-HHHHTSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HHH--HHHHHHHHCCCEEEEEECCCHHHH-HHHHHHHHHhCCCcCCceEEEECCcH
Confidence 4799999999 999999997654 222 2333343 3555666655421111 111 0
Q ss_pred HHHHHhcCCC------CCCcEEEECCCCceeccc
Q 003187 193 TYVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 193 ~~~~~~~g~~------G~P~~vfl~p~g~~~~~~ 220 (840)
+..+ .+|+. ++|+++|+|++|++++..
T Consensus 131 ~i~~-~ygv~~~~~g~~~P~~~liD~~G~I~~~~ 163 (220)
T 1zye_A 131 QISR-DYGVLLEGPGLALRGLFIIDPNGVIKHLS 163 (220)
T ss_dssp HHHH-HTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHH-HhCCeecCCCcccceEEEECCCCEEEEEE
Confidence 1122 23666 899999999999998764
No 216
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=97.42 E-value=0.00027 Score=71.01 Aligned_cols=80 Identities=9% Similarity=0.017 Sum_probs=49.6
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH---------------------
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~--------------------- 193 (840)
.||+|+|.|+ ++||+.|..+... | .++.+.+. +++..|-|+.+. ++..+.|.+
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~-l--~~l~~~~~~~~v~vi~Is~D~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 110 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQ-F--SDRVKEFSDIGCEVLACSMDS-EYSHLAWTSIERKRGGLGQMNIPILADKTK 110 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHH-H--HHTHHHHHTTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTC
T ss_pred CCCeEEEEEECCCCCCcCHHHHHH-H--HHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhhCCCCCCceeEEECCch
Confidence 4899999999 9999999976542 2 22333333 346666665542 111111111
Q ss_pred HHHHhcCCC------CCCcEEEECCCCceeccc
Q 003187 194 YVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 194 ~~~~~~g~~------G~P~~vfl~p~g~~~~~~ 220 (840)
.+...+|+. ++|+++++|++|++++..
T Consensus 111 ~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~ 143 (202)
T 1uul_A 111 CIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 143 (202)
T ss_dssp HHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHcCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 011113666 899999999999998763
No 217
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=97.41 E-value=9.2e-05 Score=73.64 Aligned_cols=79 Identities=5% Similarity=-0.070 Sum_probs=49.4
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHH----------------------
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM---------------------- 192 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~---------------------- 192 (840)
.||+|+|.|+ ++||+.|..+.. .|+ ++.+.+. +++..|-|+.+. ++..+.|.
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~-~l~--~~~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 105 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEII-ALD--KALDSFKERNVELLGCSVDS-KFTHLAWKKTPLSQGGIGNIKHTLISDISK 105 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHH-HHH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HHH--HHHHHHHHCCCEEEEEEeCC-HHHHHHHHHhHHhhCCccCCCcCeEECCcH
Confidence 5899999999 999999997644 222 2233332 355556665542 22111111
Q ss_pred HHHHHhcCCC-----CCCcEEEECCCCceeccc
Q 003187 193 TYVQALYGGG-----GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 193 ~~~~~~~g~~-----G~P~~vfl~p~g~~~~~~ 220 (840)
+..+ .+|+. ++|+++++|++|++++..
T Consensus 106 ~~~~-~~gv~~~~g~~~P~~~liD~~G~i~~~~ 137 (192)
T 2h01_A 106 SIAR-SYDVLFNESVALRAFVLIDKQGVVQHLL 137 (192)
T ss_dssp HHHH-HTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred HHHH-HhCCcCcCCceeeEEEEEcCCCEEEEEE
Confidence 1112 23666 799999999999998764
No 218
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=97.39 E-value=0.0014 Score=77.59 Aligned_cols=90 Identities=8% Similarity=0.033 Sum_probs=60.3
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-cCCCC--CCCCCc
Q 003187 537 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS--KAPGFL 613 (840)
Q Consensus 537 tsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~-~~g~~--~~~~~l 613 (840)
|+-.+-++.|||.|++++++. +..| ..++|+.|+++++|..++-- ..+... ..+.. ...++.
T Consensus 286 s~~a~e~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~l~~fA~~~~~-----~~y~~~~~~~~g~Y~ss~~~ 350 (639)
T 1clc_A 286 SAATADFVAMTAMAARIFRPY--DPQY--------AEKCINAAKVSYEFLKNNPA-----NVFANQSGFSTGEYATVSDA 350 (639)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHCCS-----CCCCCCTTCCSCCCCCSCSH
T ss_pred cHHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcCC-----CccCCCccccccccCCCCcc
Confidence 444577899999999999751 1122 26799999999999988531 111100 00000 112333
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003187 614 DDYAFLISGLLDLYEFGSGTKWLVWAIELQN 644 (840)
Q Consensus 614 eDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~ 644 (840)
-.+++|.++||.+|||..||+.|++...
T Consensus 351 ---DEl~WAAawLy~ATgd~~Yl~~a~~~~~ 378 (639)
T 1clc_A 351 ---DDRLWAAAEMWETLGDEEYLRDFENRAA 378 (639)
T ss_dssp ---HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3458899999999999999999988764
No 219
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=97.39 E-value=0.00034 Score=69.83 Aligned_cols=79 Identities=8% Similarity=-0.060 Sum_probs=49.9
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHH----------------------
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM---------------------- 192 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~---------------------- 192 (840)
.+|+|+|.|+ ++||+.|..+... | .++.+.+. +++..|-|+.+...+. ..++
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~~-l--~~l~~~~~~~~v~vv~Is~d~~~~~-~~~~~~~~~~~~~~~~~~p~l~D~~~ 108 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEIIA-F--SNRAEDFRKLGCEVLGVSVDSQFTH-LAWINTPRKEGGLGPLNIPLLADVTR 108 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHH-H--HHTHHHHHTTTEEEEEEESSCHHHH-HHHHTSCGGGTCCCSCSSCEEECTTC
T ss_pred CCCeEEEEEECCCCCCCCHHHHHH-H--HHHHHHHHHCCCEEEEEECCCHHHH-HHHHHHHHhhCCCCCCceEEEECCcH
Confidence 5899999999 9999999987542 2 23333443 3566666655431111 1111
Q ss_pred HHHHHhcCCC------CCCcEEEECCCCceeccc
Q 003187 193 TYVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 193 ~~~~~~~g~~------G~P~~vfl~p~g~~~~~~ 220 (840)
+..+. +|+. ++|+++++|++|++++..
T Consensus 109 ~~~~~-~gv~~~~~~~~~P~~~lid~~G~i~~~~ 141 (197)
T 1qmv_A 109 RLSED-YGVLKTDEGIAYRGLFIIDGKGVLRQIT 141 (197)
T ss_dssp HHHHH-TTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHH-cCCccCCCCceeeEEEEECCCCcEEEEE
Confidence 11122 3555 799999999999998763
No 220
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=97.37 E-value=0.00042 Score=72.48 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=51.8
Q ss_pred HHHHHHhcCCCEEEEEec--cCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCC-----CccHHHHHHHHHHHhcC
Q 003187 130 AFAEARKRDVPIFLSIGY--STCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-----RPDVDKVYMTYVQALYG 200 (840)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~--~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee-----~pd~~~~y~~~~~~~~g 200 (840)
-|....+.+++|||.|++ +||+ |.. +| .++++.+. .+++.++||+++ .+++.+.| +
T Consensus 14 nF~~~i~~~~~vlV~FyA~~pWCg----l~P-~~--e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~--------~ 78 (240)
T 2qc7_A 14 TFYKVIPKSKFVLVKFDTQYPYGE----KQD-EF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKY--------K 78 (240)
T ss_dssp HHHHHGGGCSEEEEEECCSSCCSH----HHH-HH--HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHT--------T
T ss_pred HHHHHHcCCCCEEEEEeCCCCCCc----chH-HH--HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHc--------C
Confidence 455555678999999999 9988 433 33 35666664 369999999654 77777666 8
Q ss_pred CC--CCCcEEEECCCCc
Q 003187 201 GG--GWPLSVFLSPDLK 215 (840)
Q Consensus 201 ~~--G~P~~vfl~p~g~ 215 (840)
+. |+||++|+. +|+
T Consensus 79 V~~~~~PTl~~f~-~G~ 94 (240)
T 2qc7_A 79 LDKESYPVFYLFR-DGD 94 (240)
T ss_dssp CCGGGCSEEEEEE-TTC
T ss_pred CCCCCCCEEEEEe-CCC
Confidence 99 999999985 455
No 221
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=97.37 E-value=0.00028 Score=81.55 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=57.6
Q ss_pred HHHHHHHHhcC-CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~-KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
++.+++.++.+ ++.++.|+++||++|+.|.. .+ .+++. .+.+....+||.++.|++...| |+.+.|+
T Consensus 106 ~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~-~l--~~~a~-~~~~v~~~~vd~~~~~~~~~~~--------~i~svPt 173 (521)
T 1hyu_A 106 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQ-AL--NLMAV-LNPRIKHTAIDGGTFQNEITER--------NVMGVPA 173 (521)
T ss_dssp HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHH-HH--HHHHH-HCTTEEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCcceEEEECCCCcCcHHHHH-HH--HHHHh-HcCceEEEEEechhhHHHHHHh--------CCCccCE
Confidence 55666665544 45577788999999999875 33 22332 3457888899999999988777 8999999
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
+++ +|+.+..
T Consensus 174 ~~i---~g~~~~~ 183 (521)
T 1hyu_A 174 VFV---NGKEFGQ 183 (521)
T ss_dssp EEE---TTEEEEE
T ss_pred EEE---CCEEEec
Confidence 977 8888754
No 222
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=97.35 E-value=0.00042 Score=68.51 Aligned_cols=43 Identities=7% Similarity=-0.127 Sum_probs=28.7
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCC
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~e 182 (840)
.||+|+|.|+++||+.|..+-.. + .++.+.+. +.+..|-|+.+
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~~-l--~~l~~~~~~~~v~vv~is~d 91 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYTQ-L--VDLHARYAECGLRILAFPCN 91 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEecCCCCchHHHHHH-H--HHHHHHhhcCCeEEEEEECc
Confidence 58999999999999999875431 2 23344443 34666666543
No 223
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=97.34 E-value=0.00043 Score=67.89 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=53.6
Q ss_pred cCCCEEEEEeccC-ChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHH----------------HHHHHHh
Q 003187 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVY----------------MTYVQAL 198 (840)
Q Consensus 137 e~KpI~l~~g~~w-C~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y----------------~~~~~~~ 198 (840)
.||+++|.|+++| |+.|..+-. .+.++.. +++..|-|+.+. ++..+.| ....+.
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~~------~l~~l~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~~~~l~D~~~~~~~~- 114 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSVR------TFDERAAASGATVLCVSKDL-PFAQKRFCGAEGTENVMPASAFRDSFGED- 114 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHH------HHHHHHHHTTCEEEEEESSC-HHHHTTCC------CEEEEECTTSSHHHH-
T ss_pred CCCEEEEEEEeCCCCchHHHHHH------HHHHHHhhcCCEEEEEECCC-HHHHHHHHHHcCCCCceEeeCCHHHHHHH-
Confidence 4899999999999 999987643 3333332 345555554431 1100000 011111
Q ss_pred cCCCCC---------CcEEEECCCCceecccc--ccCCCCCCCcccHHHHHHHHH
Q 003187 199 YGGGGW---------PLSVFLSPDLKPLMGGT--YFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 199 ~g~~G~---------P~~vfl~p~g~~~~~~t--Y~p~~~~~~~~~f~~~L~~i~ 242 (840)
+|+.+. |+++++|++|++++... -... .+.+.++|+.+.
T Consensus 115 ~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~-----~~~~~~~l~~l~ 164 (175)
T 1xvq_A 115 YGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQ-----EPNYEAALAALG 164 (175)
T ss_dssp TTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTC-----CCCHHHHHHHHH
T ss_pred hCCcccccccCCcccceEEEECCCCeEEEEEECCCcCC-----CCCHHHHHHHHH
Confidence 255444 99999999999987531 1111 235777776665
No 224
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=97.30 E-value=0.00034 Score=71.71 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=49.6
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH---------------------
Q 003187 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (840)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~--------------------- 193 (840)
.+|+|+|.|++ +||..|...-.. + .++.+.+. +++..|-|..+...+. ..+.+
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~p~-l--~~l~~~~~~~~v~vv~Is~D~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~~ 143 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEIIA-F--SDQVEEFNSRNCQVIACSTDSQYSH-LAWDNLDRKSGGLGHMKIPLLADRKQ 143 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHHHH-H--HHTHHHHHTTTEEEEEEESSCHHHH-HHHHHSCGGGTSCCSCSSCEEECSSS
T ss_pred CCCeEEEEEECCCCCCchHHHHHH-H--HHHHHHHHHCCCEEEEEECCCHHHH-HHHHHHhhhhccccccceeEEeCCch
Confidence 58999999997 999999986532 1 23333343 3466666655431111 12211
Q ss_pred HHHHhcCCC------CCCcEEEECCCCceeccc
Q 003187 194 YVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 194 ~~~~~~g~~------G~P~~vfl~p~g~~~~~~ 220 (840)
.+...+|+. ++|+++++|++|++++..
T Consensus 144 ~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~ 176 (222)
T 3ztl_A 144 EISKAYGVFDEEDGNAFRGLFIIDPNGILRQIT 176 (222)
T ss_dssp HHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEE
T ss_pred HHHHHcCCeecCCCCccceEEEECCCCeEEEEE
Confidence 111223655 789999999999998763
No 225
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=97.27 E-value=0.00064 Score=65.17 Aligned_cols=80 Identities=8% Similarity=0.000 Sum_probs=49.1
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHH--------------HHHhcC
Q 003187 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY--------------VQALYG 200 (840)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~~--------------~~~~~g 200 (840)
.||+++|.|++ +||+.|...-.. + .++.+.+. +++..|-|..+ .++..+.|.+. +....|
T Consensus 34 ~gk~~vl~F~~~~~c~~C~~~~~~-l--~~~~~~~~~~~~~vv~vs~d-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 109 (163)
T 3gkn_A 34 AGHWLVIYFYPKDSTPGATTEGLD-F--NALLPEFDKAGAKILGVSRD-SVKSHDNFCAKQGFAFPLVSDGDEALCRAFD 109 (163)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHH-H--HHHHHHHHHTTCEEEEEESS-CHHHHHHHHHHHCCSSCEEECTTCHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHH-H--HHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHhCCCceEEECCcHHHHHHhC
Confidence 48899999998 999999976432 2 22333333 34555555554 34433334321 111224
Q ss_pred CCC------------CCcEEEECCCCceeccc
Q 003187 201 GGG------------WPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 201 ~~G------------~P~~vfl~p~g~~~~~~ 220 (840)
+.+ .|+++++|++|++++..
T Consensus 110 v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 110 VIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp CEEEEEETTEEEEEECCEEEEECTTSCEEEEE
T ss_pred CccccccccccccCcceEEEEECCCCeEEEEE
Confidence 444 89999999999998653
No 226
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=97.20 E-value=0.0011 Score=67.64 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=21.4
Q ss_pred hcCCCEEEEEeccCChhhhhhhhc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~e 159 (840)
..+|++++.|+..||++|+.++.+
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~ 107 (216)
T 1eej_A 84 PQEKHVITVFTDITCGYCHKLHEQ 107 (216)
T ss_dssp TTCCEEEEEEECTTCHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHH
Confidence 458899999999999999999864
No 227
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=97.18 E-value=0.00065 Score=65.54 Aligned_cols=76 Identities=12% Similarity=0.187 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~-pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.++.+.+.+ +|.| |+++||++|+.+.. . .+.++-.|..|.||.++. +++. ..+...+|+.++|+
T Consensus 39 ~~~~~~~i~~~-~Vvv-f~~~~Cp~C~~~k~-~------L~~~~i~~~~vdId~~~~~~~~~----~~L~~~~g~~tvP~ 105 (146)
T 2ht9_A 39 VNQIQETISDN-CVVI-FSKTSCSYCTMAKK-L------FHDMNVNYKVVELDLLEYGNQFQ----DALYKMTGERTVPR 105 (146)
T ss_dssp HHHHHHHHHHC-SEEE-EECTTCHHHHHHHH-H------HHHHTCCCEEEEGGGCTTHHHHH----HHHHHHHSCCCSCE
T ss_pred HHHHHHHhcCC-CEEE-EECCCChhHHHHHH-H------HHHcCCCeEEEECccCcCCHHHH----HHHHHHhCCCCcCe
Confidence 56666666665 4555 99999999999864 2 233455787777776522 3322 22233358999998
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
+++ +|+.+.+
T Consensus 106 ifi---~G~~igG 115 (146)
T 2ht9_A 106 IFV---NGTFIGG 115 (146)
T ss_dssp EEE---TTEEEES
T ss_pred EEE---CCEEEeC
Confidence 753 6777654
No 228
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=97.17 E-value=0.00062 Score=69.39 Aligned_cols=79 Identities=5% Similarity=-0.078 Sum_probs=49.4
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHH----------------------
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM---------------------- 192 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~---------------------- 192 (840)
.+|+|+|.|+ ++||+.|..+... |+ ++.+.+. +++..|-|..+. ++..+.|.
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~-l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 126 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIA-LD--KALDAFHERNVELLGCSVDS-KYTHLAWKKTPLAKGGIGNIKHTLLSDITK 126 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHH-HH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHSSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHH-HH--HHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhhCCccCCCceEEECCch
Confidence 5899999999 9999999986542 21 2233332 355555555442 22111121
Q ss_pred HHHHHhcCCC-----CCCcEEEECCCCceeccc
Q 003187 193 TYVQALYGGG-----GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 193 ~~~~~~~g~~-----G~P~~vfl~p~g~~~~~~ 220 (840)
+..+ .+|+. ++|+++++|++|++++..
T Consensus 127 ~~~~-~ygv~~~~g~~~p~~~lID~~G~i~~~~ 158 (213)
T 2i81_A 127 SISK-DYNVLFDDSVSLRAFVLIDMNGIVQHLL 158 (213)
T ss_dssp HHHH-HTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHH-HhCCccccCCcccEEEEECCCCEEEEEE
Confidence 1112 23666 799999999999998764
No 229
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=97.15 E-value=0.0012 Score=64.57 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=29.1
Q ss_pred hcCCCEEEEEeccCCh-hhhhhhhcccCCHHHHHHHhc-----CeEEEEEcC
Q 003187 136 KRDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLND-----WFVSIKVDR 181 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~-wC~~me~etf~d~eVa~~ln~-----~FV~vkvD~ 181 (840)
=.||+|+|+|++.||+ ||..+-.+. +++.+.+.+ .||.|-||-
T Consensus 30 ~~Gk~vll~F~~t~Cp~~Cp~~~~~l---~~l~~~~~~~~~~v~~v~isvDp 78 (170)
T 4hde_A 30 LKGKVWVADFMFTNCQTVCPPMTANM---AKLQKMAKEEKLDVQFVSFSVDP 78 (170)
T ss_dssp HTTSCEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHTTCCCEEEEEESCT
T ss_pred hCCCEEEEEEECCCCCCcccHHHHHH---HHHHHhhhcccccceeEeeecCc
Confidence 3699999999999996 997654422 345555532 356666663
No 230
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=97.09 E-value=0.00055 Score=66.80 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=59.0
Q ss_pred HHHHhcCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------H
Q 003187 132 AEARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------V 195 (840)
Q Consensus 132 ~~Ak~e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~---------------~ 195 (840)
..-..+||+|+|.|+ ++||+.|...- ..|++- ..++-+.++..|-|..+ .|+..+.|.+. .
T Consensus 27 sd~~~~Gk~vvl~f~~~~~cp~C~~e~-~~l~~~-~~~~~~~~v~vv~is~d-~~~~~~~~~~~~~~~fp~l~D~~~~v~ 103 (164)
T 4gqc_A 27 YEVLKRGRPAVLIFFPAAFSPVCTKEL-CTFRDK-MAQLEKANAEVLAISVD-SPWCLKKFKDENRLAFNLLSDYNREVI 103 (164)
T ss_dssp HHHHHTSSCEEEEECSCTTCCEECSSC-EESCCC-GGGGGGSSSEEEEEESS-CHHHHHHHHHHTTCCSEEEECTTSHHH
T ss_pred HHHhcCCCEEEEEEeCCCCCCCcccch-hhhhhh-HHHhhccCceEEEecCC-CHHHHHHHHHhcCcccceeecCchHHH
Confidence 333457999999998 99999998632 233321 11222334555555443 23333333221 1
Q ss_pred HHhcCCC----------CCCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHHHH
Q 003187 196 QALYGGG----------GWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDA 244 (840)
Q Consensus 196 ~~~~g~~----------G~P~~vfl~p~g~~~~~~-tY~p~~~~~~~~~f~~~L~~i~~~ 244 (840)
+. +|+. ..|+++++|++|++.+.. +..| .+++++-++|+.+.++
T Consensus 104 ~~-ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~----~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 104 KL-YNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNP----LNEPDYDEVVREANKI 158 (164)
T ss_dssp HH-TTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCT----TCCCCHHHHHHHHHHH
T ss_pred HH-cCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCC----CCCCCHHHHHHHHHHH
Confidence 11 2331 368899999999988753 2222 2346777777776543
No 231
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=97.08 E-value=0.0023 Score=63.54 Aligned_cols=44 Identities=23% Similarity=0.098 Sum_probs=31.0
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e 182 (840)
..+|++++.|+..||++|+.++... +++.+.+..+.+.+.++..
T Consensus 23 ~~~~~~vv~f~d~~Cp~C~~~~~~l---~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 23 TPGKIEVLEFFAYTCPHCAAIEPMV---EDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp STTCEEEEEEECTTCHHHHHHHHHH---HHHHHTCCTTEEEEEEECC
T ss_pred CCCCeEEEEEECCCCccHHHhhHHH---HHHHHHCCCCeEEEEEecc
Confidence 3478999999999999999998532 4444444335666666654
No 232
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=97.07 E-value=0.011 Score=69.76 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCC----Ccc
Q 003187 539 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG----FLD 614 (840)
Q Consensus 539 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~----~le 614 (840)
-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++- |. |.++.. ..+ ...
T Consensus 152 ~a~~~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~~~~fA~~~~-----g~----y~~~~~-~~~~Y~s~s~ 211 (605)
T 1tf4_A 152 VAAETAAAMAASSIVFADD--DPAY--------AATLVQHAKQLYTFADTYR-----GV----YSDCVP-AGAFYNSWSG 211 (605)
T ss_dssp HHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHSC-----CC----GGGTST-THHHHCCSSC
T ss_pred HHHHHHHHHHHHHhhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CC----cCCCCC-ccccccCCCC
Confidence 4588999999999999851 1122 2679999999999998752 11 111111 110 112
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003187 615 DYAFLISGLLDLYEFGSGTKWLVWAIELQ 643 (840)
Q Consensus 615 DyA~~i~aLl~LYeaTgd~~yL~~A~~L~ 643 (840)
..-.+++|.++||.+|||..||+.|++..
T Consensus 212 ~~DEl~WAAawLy~ATgd~~Yl~~a~~~~ 240 (605)
T 1tf4_A 212 YQDELVWGAYWLYKATGDDSYLAKAEYEY 240 (605)
T ss_dssp SHHHHHHHHHHHHHHHCCHHHHHHHHHHG
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 23467889999999999999999998743
No 233
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*
Probab=97.04 E-value=0.025 Score=66.69 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=109.2
Q ss_pred CCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH---HHcc-CChHHHHHHHHHHHHHHHhccCCCCceEeec-cCCc
Q 003187 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDA---FSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DADS 431 (840)
Q Consensus 357 v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~A---y~~t-gd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~-DADs 431 (840)
+-||+| |..=++-+---|-|.-.+|+|+|.+. |... +-+..++.++-.++||++ |....|+||.-. |.+.
T Consensus 49 lsGGwy----DAGD~~Kf~~p~a~t~~~L~w~~~e~~~~~~~~g~~~d~ldeikwg~Dyllk-~~~~~~~~y~qVGdg~~ 123 (614)
T 1g87_A 49 LTGGWY----DAGDHVKFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIK-CNPTPGVYYYQVGDGGK 123 (614)
T ss_dssp CCCSBC----CSSSCCEEHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TCCSTTCEEEEESCHHH
T ss_pred CCCCee----eCCCCcEeccccHHHHHHHHHHHHHhHHHHhhCCChHHHHHHHHHHHHHHHH-hccCCCcEEEEecCCCc
Confidence 678888 44444555556888888999888775 4333 347899999999999998 544457777532 1111
Q ss_pred ccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHH
Q 003187 432 AETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 511 (840)
Q Consensus 432 ~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~ 511 (840)
. ...|+.-+. + + ..+....+.
T Consensus 124 D--------------------------H~~w~~pe~-------~--~----~~r~~y~v~-------------------- 144 (614)
T 1g87_A 124 D--------------------------HSWWGPAEV-------M--Q----MERPSFKVD-------------------- 144 (614)
T ss_dssp H--------------------------HTCCSCGGG-------C--C----SCCCEEEEC--------------------
T ss_pred C--------------------------ccccCCccc-------C--C----CCCcceEec--------------------
Confidence 0 000110000 0 0 001110000
Q ss_pred HHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 003187 512 LGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 591 (840)
Q Consensus 512 l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~ 591 (840)
...|. |+-.+.++.|||.|++++++. +..| ..++|+.|+++++|..++--
T Consensus 145 --------------~~~pg------sd~a~e~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~l~~fA~~~~~ 194 (614)
T 1g87_A 145 --------------ASKPG------SAVCASTAASLASAAVVFKSS--DPTY--------AEKCISHAKNLFDMADKAKS 194 (614)
T ss_dssp --------------SSSCC------HHHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHHCC
T ss_pred --------------CCCCc------cHHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcCC
Confidence 01222 334588999999999999752 1122 26789999999999998742
Q ss_pred ccCCCeEEEeecCCCC--CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003187 592 DEQTHRLQHSFRNGPS--KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIEL 642 (840)
Q Consensus 592 d~~~G~l~~~~~~g~~--~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L 642 (840)
. .+ ...+.. ...++.+ .+++|.++||.+|||..||+.|++.
T Consensus 195 ~--~~-----~~~~~~~Y~ss~~~D---El~WAAawLy~ATgd~~Yl~~a~~~ 237 (614)
T 1g87_A 195 D--AG-----YTAASGYYSSSSFYD---DLSWAAVWLYLATNDSTYLDKAESY 237 (614)
T ss_dssp C--TT-----CCTTTTTSCCSCSHH---HHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred C--CC-----CCcCcCCcCCCCchh---HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1 11 001111 1123333 4588999999999999999999863
No 234
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.0017 Score=60.94 Aligned_cols=76 Identities=13% Similarity=0.233 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~-pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.+..+.+.++ |.| |+++||++|+.+.. .| +.++-.|..|.||.++. +++ +..+...+|+.++|+
T Consensus 17 ~~~~~~~i~~~~-vvv-f~~~~Cp~C~~~~~-~L------~~~~i~~~~vdid~~~~~~~~----~~~l~~~~g~~~vP~ 83 (130)
T 2cq9_A 17 VNQIQETISDNC-VVI-FSKTSCSYCTMAKK-LF------HDMNVNYKVVELDLLEYGNQF----QDALYKMTGERTVPR 83 (130)
T ss_dssp HHHHHHHHHHSS-EEE-EECSSCSHHHHHHH-HH------HHHTCCCEEEETTTSTTHHHH----HHHHHHHHSSCCSSE
T ss_pred HHHHHHHHcCCc-EEE-EEcCCChHHHHHHH-HH------HHcCCCcEEEECcCCcCcHHH----HHHHHHHhCCCCcCE
Confidence 556666666664 555 99999999999864 22 33455777766665421 332 222333458899998
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
+++ +|+.+.+
T Consensus 84 l~i---~G~~igg 93 (130)
T 2cq9_A 84 IFV---NGTFIGG 93 (130)
T ss_dssp EEE---TTEEEEE
T ss_pred EEE---CCEEEcC
Confidence 754 6776643
No 235
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=97.01 E-value=0.002 Score=64.66 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.2
Q ss_pred cCCCEEEEEeccCChh-hhhhhh
Q 003187 137 RDVPIFLSIGYSTCHW-CHVMEV 158 (840)
Q Consensus 137 e~KpI~l~~g~~wC~w-C~~me~ 158 (840)
.||+|+|.|+++||+. |..+-.
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~~ 62 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDELD 62 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHH
Confidence 4899999999999997 987643
No 236
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=96.97 E-value=0.012 Score=67.28 Aligned_cols=185 Identities=16% Similarity=0.085 Sum_probs=109.1
Q ss_pred CCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH---HHccC-ChHHHHHHHHHHHHHHHhccCCCCceEeec-cCCc
Q 003187 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDA---FSLTK-DVFYSYICRDILDYLRRDMIGPGGEIFSAE-DADS 431 (840)
Q Consensus 357 v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~A---y~~tg-d~~y~~~A~~t~~fl~r~m~~~~Ggfysa~-DADs 431 (840)
+-||+| |..=++-+---|-|....|+|+|.+. |...+ -+..++.++-.++||++ |...+|+||.-. |.+.
T Consensus 70 lsGGwy----DAGD~~Ky~~~~a~t~~~L~w~~~e~~~~~~~~~~~~d~ldeikwg~D~llk-~~~~~~~~y~qVgd~~~ 144 (466)
T 2xfg_A 70 LTGGWY----DAGDHVKFNLPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIK-CHPEKDVYYYQVGDGHA 144 (466)
T ss_dssp CCCSBC----CSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHH-TCSBTTEEEEEESCHHH
T ss_pred CCCCce----eCCCCCeeccccHHHHHHHHHHHHHhHHHHhcCCCchHHHHHHHHHHHHHHH-hccCCCcEEEEeCCCCc
Confidence 678888 44444555556888888999888774 44333 47899999999999998 544457777632 1111
Q ss_pred ccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHH
Q 003187 432 AETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 511 (840)
Q Consensus 432 ~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~~~~a~~~g~~~e~l~~~ 511 (840)
. ...|+.-+.. .. .+....+.
T Consensus 145 D--------------------------h~~W~~pe~~-------~~------~R~~y~i~-------------------- 165 (466)
T 2xfg_A 145 D--------------------------HAWWGPAEVM-------PM------ERPSYKVD-------------------- 165 (466)
T ss_dssp H--------------------------HTCCSCGGGC-------CS------CCCEEEEE--------------------
T ss_pred c--------------------------ccccCCcccC-------CC------CCceeEec--------------------
Confidence 0 0001100000 00 01110000
Q ss_pred HHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 003187 512 LGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 591 (840)
Q Consensus 512 l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~ 591 (840)
...|. |+-.+.++.|||.|++++++. +..| ..++|+.|+++++|..++--
T Consensus 166 --------------~~~pg------sd~a~e~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~l~~fA~~~~~ 215 (466)
T 2xfg_A 166 --------------RSSPG------STVVAETSAALAIASIIFKKV--DGEY--------SKECLKHAKELFEFADTTKS 215 (466)
T ss_dssp --------------SSSCC------HHHHHHHHHHHHHHHHHTTTT--CHHH--------HHHHHHHHHHHHHHHHHHCC
T ss_pred --------------CCCCc------cHHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHhcCC
Confidence 01122 334588999999999999752 1122 26789999999999998742
Q ss_pred ccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003187 592 DEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIEL 642 (840)
Q Consensus 592 d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L 642 (840)
. + ....+...........-.+++|.++||.+|||..||+.|++.
T Consensus 216 ~-----~--~~~~~~~~Y~s~s~~~DEl~WAAawLy~ATgd~~Yl~~a~~~ 259 (466)
T 2xfg_A 216 D-----D--GYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAESY 259 (466)
T ss_dssp C-----T--TCCTTTTTSCCSSCSHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred c-----C--CCCccccccCCCCCCchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1 0 000111111111122335688999999999999999999864
No 237
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=96.93 E-value=0.00055 Score=66.11 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=51.9
Q ss_pred hcCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------HHHhc
Q 003187 136 KRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALY 199 (840)
Q Consensus 136 ~e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~---------------~~~~~ 199 (840)
-.||+|+|.|+ ++||+.|...-. .|++- ..++-+.+++.|-|..+. |+..+.|.+. .+. +
T Consensus 28 ~~Gk~vvl~f~~~~~c~~C~~e~~-~l~~~-~~~~~~~~~~~v~vs~d~-~~~~~~~~~~~~~~~p~l~D~~~~v~~~-y 103 (157)
T 4g2e_A 28 LKGKVVVLAFYPAAFTQVCTKEMC-TFRDS-MAKFNQVNAVVLGISVDP-PFSNKAFKEHNKLNFTILSDYNREVVKK-Y 103 (157)
T ss_dssp GTTSCEEEEECSCTTCCC-------CCSCG-GGGGGGCSSEEEEEESSC-HHHHHHHHHHTTCCSEEEECTTSHHHHH-T
T ss_pred HCCCeEEEEecCCCCCCccccchh-hcccc-cccccccCceEeeecccc-hhHHHHHHHHcCCcEEEEEcCCcHHHHH-c
Confidence 35899999998 999999986433 33321 122233456666665542 3333333221 111 1
Q ss_pred CCC-----------CCCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHH
Q 003187 200 GGG-----------GWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 200 g~~-----------G~P~~vfl~p~g~~~~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
|+. ..|+++++|++|++.+.. +..+. +.+.+-++++.|.
T Consensus 104 gv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~----~~~~~~eil~~l~ 154 (157)
T 4g2e_A 104 NVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPT----KEPPYDEIEKVVK 154 (157)
T ss_dssp TCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTT----CCCCHHHHHHHHH
T ss_pred CCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCC----CCCCHHHHHHHHH
Confidence 321 357889999999987753 22222 2345666665554
No 238
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=96.87 E-value=0.0016 Score=67.75 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=53.8
Q ss_pred HHHHHH-HHhcCCCEEEEEeccC--ChhhhhhhhcccCCHHHHHHHhc---C--eEEEEEcCCCCccHHHHHHHHHHHhc
Q 003187 128 EEAFAE-ARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLND---W--FVSIKVDREERPDVDKVYMTYVQALY 199 (840)
Q Consensus 128 ~eAl~~-Ak~e~KpI~l~~g~~w--C~wC~~me~etf~d~eVa~~ln~---~--FV~vkvD~ee~pd~~~~y~~~~~~~~ 199 (840)
.+.|+. -++-++||.|.|+++| |.+|+.|.. .+ +++++..++ + ...+++|.++.+++.+.|
T Consensus 14 ~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~-~l--~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~-------- 82 (243)
T 2hls_A 14 RRELRETLAEMVNPVEVHVFLSKSGCETCEDTLR-LM--KLFEEESPTRNGGKLLKLNVYYRESDSDKFSEF-------- 82 (243)
T ss_dssp HHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHH-HH--HHHHHHSCEETTEESEEEEEEETTTTHHHHHHT--------
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHH-HH--HHHHHhccCCCCCceeEEEEecCCcCHHHHHhc--------
Confidence 445533 3566799999999999 999999964 22 455554321 1 667789999988887776
Q ss_pred CCCCCCcEEEE
Q 003187 200 GGGGWPLSVFL 210 (840)
Q Consensus 200 g~~G~P~~vfl 210 (840)
|+.++|+++|+
T Consensus 83 gv~~~Pt~~i~ 93 (243)
T 2hls_A 83 KVERVPTVAFL 93 (243)
T ss_dssp TCCSSSEEEET
T ss_pred CCCcCCEEEEE
Confidence 88899999998
No 239
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=96.82 E-value=0.0025 Score=63.15 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=27.6
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEE
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV 179 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkv 179 (840)
.+|++++.|+..||++|+.++. ++ +++.+.+..+++.+.+
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~-~l--~~l~~~~~~~v~~~~~ 63 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEP-TI--VPWSEKLPADVHFVRL 63 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHH-HH--HHHHHTCCTTEEEEEE
T ss_pred CCCCEEEEEECCCChhHHHhhH-HH--HHHHHhCCCCeEEEEE
Confidence 5788999999999999999986 33 4454444334444333
No 240
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=96.82 E-value=0.0012 Score=64.25 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=20.3
Q ss_pred hcCCCEEEEEeccCChhhhhhhh
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEV 158 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~ 158 (840)
..+|++++.|+..||++|+.++.
T Consensus 20 ~~a~v~i~~f~d~~Cp~C~~~~~ 42 (175)
T 3gyk_A 20 PEGDVTVVEFFDYNCPYCRRAMA 42 (175)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHH
T ss_pred CCCCEEEEEEECCCCccHHHHHH
Confidence 45788999999999999999985
No 241
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=96.82 E-value=0.0016 Score=66.24 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=21.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~e 159 (840)
..+|++++.|+..||++|+.++.+
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~ 107 (211)
T 1t3b_A 84 KNEKHVVTVFMDITCHYCHLLHQQ 107 (211)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHhHHHHHHH
Confidence 357889999999999999999864
No 242
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=96.79 E-value=0.0034 Score=57.99 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhh-hhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~m-e~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.++.+.+.++ |. .|+++||++|+.+ .. .+++... -+-.|..|.||. .|+- ....+.+...+|..++|+
T Consensus 15 ~~~~~~~i~~~~-Vv-vf~~~~Cp~C~~alk~-~L~~~~~---~~i~~~~vdid~--~~~~-~~~~~~l~~~~g~~tvP~ 85 (118)
T 3c1r_A 15 IKHVKDLIAENE-IF-VASKTYCPYCHAALNT-LFEKLKV---PRSKVLVLQLND--MKEG-ADIQAALYEINGQRTVPN 85 (118)
T ss_dssp HHHHHHHHHHSS-EE-EEECSSCHHHHHHHHH-HHTTSCC---CGGGEEEEEGGG--STTH-HHHHHHHHHHHSCCSSCE
T ss_pred HHHHHHHHccCc-EE-EEEcCCCcCHHHHHHH-HHHHcCC---CCCCeEEEECcc--CCCh-HHHHHHHHHHhCCCCcCE
Confidence 455566655554 33 3999999999987 43 3332210 002455544444 3431 112222333458899997
Q ss_pred EEEECCCCceecc
Q 003187 207 SVFLSPDLKPLMG 219 (840)
Q Consensus 207 ~vfl~p~g~~~~~ 219 (840)
. |+ +|+.+.+
T Consensus 86 v-fi--~g~~igG 95 (118)
T 3c1r_A 86 I-YI--NGKHIGG 95 (118)
T ss_dssp E-EE--TTEEEES
T ss_pred E-EE--CCEEEEc
Confidence 6 44 5676643
No 243
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=96.78 E-value=0.0045 Score=55.02 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCC
Q 003187 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREER-PDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~-pd~~~~y~~~~~~~~g~~G~ 204 (840)
+-++...++++ ++.|+++||++|+.+.. .+ +.++.. |..|.||.+.. +++. +.+...+|..++
T Consensus 3 ~~~~~~i~~~~--v~~f~~~~C~~C~~~~~-~L------~~~~~~~~~~~~vdi~~~~~~~~~~----~~l~~~~g~~~v 69 (105)
T 1kte_A 3 AFVNSKIQPGK--VVVFIKPTCPFCRKTQE-LL------SQLPFKEGLLEFVDITATSDTNEIQ----DYLQQLTGARTV 69 (105)
T ss_dssp HHHHHHCCTTC--EEEEECSSCHHHHHHHH-HH------HHSCBCTTSEEEEEGGGSTTHHHHH----HHHHHHHSCCCS
T ss_pred hHHHhhcccCC--EEEEEcCCCHhHHHHHH-HH------HHcCCCCCccEEEEccCCCCHHHHH----HHHHHHhCCCCc
Confidence 34555555554 44589999999998864 22 223334 77666665421 2221 222233488999
Q ss_pred CcEEEECCCCceecc
Q 003187 205 PLSVFLSPDLKPLMG 219 (840)
Q Consensus 205 P~~vfl~p~g~~~~~ 219 (840)
|+.+ + +|+.+.+
T Consensus 70 P~i~-~--~g~~i~g 81 (105)
T 1kte_A 70 PRVF-I--GKECIGG 81 (105)
T ss_dssp CEEE-E--TTEEEES
T ss_pred CeEE-E--CCEEEec
Confidence 9974 4 6776643
No 244
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=96.77 E-value=0.00083 Score=57.22 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=39.7
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC--CCCCCcEEEECCCCceecc
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG--GGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g--~~G~P~~vfl~p~g~~~~~ 219 (840)
++.|+++||++|+.+.. .+++ +++. ..++-.+++|.++.++....+ ...+| +.++|+.+ + +|+.+.+
T Consensus 3 v~~f~~~~C~~C~~~~~-~l~~--l~~~-~~~i~~~~vdi~~~~~~~~~l----~~~~~~~~~~vP~i~-~--~g~~i~~ 71 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKD-LAEK--LSNE-RDDFQYQYVDIRAEGITKEDL----QQKAGKPVETVPQIF-V--DQQHIGG 71 (85)
T ss_dssp EEEECCTTSTHHHHHHH-HHHH--HHHH-HSSCEEEEECHHHHTCCSHHH----HHHTCCCSCCSCEEE-E--TTEEEES
T ss_pred EEEEeCCCCCCHHHHHH-HHHH--HHhc-CCCceEEEEecccChHHHHHH----HHHhCCCCceeCeEE-E--CCEEEEC
Confidence 56689999999999875 3332 2222 135667778875433211111 11236 78999974 4 6777643
No 245
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Probab=96.76 E-value=0.015 Score=68.67 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC--CCCCCcchHH
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYA 617 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~--~~~~~leDyA 617 (840)
.+.++.|||.|++++++. +..| ..++|+.|+++++|..++- |.+......+.. ...++.+
T Consensus 219 a~~~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~~~~fA~~~~-----~~y~~~~~~~~~~Y~ss~~~D--- 280 (611)
T 2yik_A 219 ISATAASLAINYMNFKDT--DPQY--------AAKSLDYAKALFDFAEKNP-----KGVVQGEDGPKGYYGSSKWQD--- 280 (611)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHSC-----CCCCCGGGTTTTTSCCCCSHH---
T ss_pred HHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CcccCCCcccCcCCCCCCccc---
Confidence 488899999999999752 1122 2678999999999998863 111110111111 1123334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003187 618 FLISGLLDLYEFGSGTKWLVWAIELQ 643 (840)
Q Consensus 618 ~~i~aLl~LYeaTgd~~yL~~A~~L~ 643 (840)
.+++|.++||.+|||..|++.|++..
T Consensus 281 El~WAAawLy~ATgd~~Yl~~a~~~~ 306 (611)
T 2yik_A 281 DYCWAAAWLYLATQNEHYLDEAFKYY 306 (611)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45789999999999999999998754
No 246
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=96.75 E-value=0.0045 Score=60.88 Aligned_cols=78 Identities=8% Similarity=0.017 Sum_probs=46.9
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHH---------------HHHhc
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY---------------VQALY 199 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~~---------------~~~~~ 199 (840)
.||+|+|.|+ ++||..|...-. .+ .++.+.+. +++..|-|..+. ++..+.|.+. .+. .
T Consensus 50 ~Gk~vvl~f~~~~~c~~C~~el~-~l--~~l~~~~~~~~~~vv~Vs~D~-~~~~~~~~~~~~~~f~~l~D~~~~~~~~-~ 124 (179)
T 3ixr_A 50 TNQWLVLYFYPKDNTPGSSTEGL-EF--NLLLPQFEQINATVLGVSRDS-VKSHDSFCAKQGFTFPLVSDSDAILCKA-F 124 (179)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHH-HH--HHHHHHHHTTTEEEEEEESCC-HHHHHHHHHHHTCCSCEEECTTCHHHHH-T
T ss_pred CCCCEEEEEEcCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHcCCceEEEECCchHHHHH-c
Confidence 5899999998 999999986432 22 23333333 346666665553 3322333221 111 2
Q ss_pred CCCC------------CCcEEEECCCCceecc
Q 003187 200 GGGG------------WPLSVFLSPDLKPLMG 219 (840)
Q Consensus 200 g~~G------------~P~~vfl~p~g~~~~~ 219 (840)
|+.+ .|+++++|++|++++.
T Consensus 125 gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~ 156 (179)
T 3ixr_A 125 DVIKEKTMYGRQVIGIERSTFLIGPTHRIVEA 156 (179)
T ss_dssp TCEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred CCcccccccCcccCCcceEEEEECCCCEEEEE
Confidence 3321 5899999999999865
No 247
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=96.75 E-value=0.27 Score=55.02 Aligned_cols=152 Identities=13% Similarity=0.153 Sum_probs=98.3
Q ss_pred cchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCC--
Q 003187 532 DDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-- 609 (840)
Q Consensus 532 DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~-- 609 (840)
|+.-|..=|+||...+++- .+.. .++.++.++....--.+..+|++++.|.-.+.+|+...
T Consensus 292 d~~pl~~dn~La~l~l~~~---~~~~--------------d~~~l~W~i~gLka~~~yAYd~~~N~~~Pm~~dG~dltgy 354 (543)
T 2v8i_A 292 RTSTLYSENALMQLQLGKD---LGPQ--------------GQDLLKWTVDGLKAFAKYAYNDQDNTFRPMIANGQDLSNY 354 (543)
T ss_dssp HHHHHHTHHHHHHHHHHHH---HGGG--------------GHHHHHHHHHHHHHHHHHHEETTTTEECCEETTSCBCTTE
T ss_pred CCcceeecCHHHHHHHHHH---hcCc--------------hHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCc
Confidence 4555555667766666555 3110 15788888888777777889999998887788876411
Q ss_pred ---------------CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCcccccccc
Q 003187 610 ---------------PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKE 674 (840)
Q Consensus 610 ---------------~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~ 674 (840)
.++.-|-. ....++..|..++|+.-.+.+..|+..+---=++. .......+
T Consensus 355 ~l~RdGYYG~KGtvl~~~p~~~~-yll~~vra~~~s~D~~Lw~~~~~ma~~~~lgdi~~-------~~~~~~~~------ 420 (543)
T 2v8i_A 355 TLPRDGYYGKKGTVLKPYKAGNE-FLISYARAYAIDNDPLLWKVARGIANDQGLGDIGT-------APGKEVKV------ 420 (543)
T ss_dssp ECSSCBTTBCTTCEECCEECCHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHTTCEECTT-------BTTBSCEE------
T ss_pred ccccccccCCCCCeeccccCCch-hhHHHHHHHHcCCCHHHHHHHHHHHhhCCccccCC-------CcCccccc------
Confidence 12222333 56799999999999998888887765432111111 11111111
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003187 675 DHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 719 (840)
Q Consensus 675 ~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~ 719 (840)
+-..+.....++-+|+.|++.|++ +.|++.|+++-+.+..
T Consensus 421 --~~~~~~~sp~lL~allEL~~atq~---~~~l~lA~~~g~nl~~ 460 (543)
T 2v8i_A 421 --NMDTTNSDPYALFALLDLYHASQV---ADYRKLAEKIGDNIIK 460 (543)
T ss_dssp --CTTCCCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred --ccCCCCcCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHH
Confidence 223345556788899999999986 8899999877666544
No 248
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=96.72 E-value=0.0019 Score=59.09 Aligned_cols=80 Identities=13% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+.++.+.+.++ ++.|+++||++|+.+.. .|+.-.+. +.+|..|.||. .|+-... .+.+...+|..++|+.
T Consensus 9 ~~~~~~~i~~~~--vv~f~~~~Cp~C~~~~~-~L~~~~~~---~~~~~~vdi~~--~~~~~~~-~~~l~~~~g~~~vP~v 79 (114)
T 2hze_A 9 EEFVQQRLANNK--VTIFVKYTCPFCRNALD-ILNKFSFK---RGAYEIVDIKE--FKPENEL-RDYFEQITGGKTVPRI 79 (114)
T ss_dssp HHHHHTTCCTTC--EEEEECTTCHHHHHHHH-HHTTSCBC---TTSEEEEEGGG--SSSHHHH-HHHHHHHHSCCSSCEE
T ss_pred HHHHHHHhccCC--EEEEEeCCChhHHHHHH-HHHHcCCC---cCceEEEEccC--CCChHHH-HHHHHHHhCCCCcCEE
Confidence 455666665444 55589999999998864 44332211 01266555554 3421111 1222233489999976
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
+ + +|+.+.+
T Consensus 80 ~-i--~g~~igg 88 (114)
T 2hze_A 80 F-F--GKTSIGG 88 (114)
T ss_dssp E-E--TTEEEES
T ss_pred E-E--CCEEEeC
Confidence 4 4 6777643
No 249
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=96.71 E-value=0.0031 Score=60.95 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=54.2
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHHHH----------------Hh
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQ----------------AL 198 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~~~~----------------~~ 198 (840)
.||+|+|.|+ +.||+.|...- |++.++.. +++..|-|..+. ++..+.|.+... ..
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~~~------~~l~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 117 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQQT------RKFNSDASKEEGIVLTISADL-PFAQKRWCASAGLDNVITLSDHRDLSFGEN 117 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHHHH------HHHHHHSCTTTSEEEEEESSC-HHHHHHHHHHHTCSSCEEEECTTTCHHHHH
T ss_pred CCCcEEEEEECCCCCCccHHHH------HHHHHHhhcCCCEEEEEECCC-HHHHHHHHHHcCCCceEEccCCchhHHHHH
Confidence 4899999998 78999998632 33333333 244444444432 222222221111 01
Q ss_pred cCCCC------CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 199 YGGGG------WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 199 ~g~~G------~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
+|+.+ .|+++++|++|++++....... ...+.+-++|+.|.
T Consensus 118 ~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~---~~~~~~~~il~~l~ 164 (166)
T 3p7x_A 118 YGVVMEELRLLARAVFVLDADNKVVYKEIVSEG---TDFPDFDAALAAYK 164 (166)
T ss_dssp HTCEETTTTEECCEEEEECTTCBEEEEEECSBT---TSCCCHHHHHHHHH
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEEcCCc---ccCCCHHHHHHHHh
Confidence 14433 7999999999999876211111 12356777777664
No 250
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=96.66 E-value=0.0019 Score=66.40 Aligned_cols=80 Identities=6% Similarity=-0.075 Sum_probs=45.5
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHH--------------------
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY-------------------- 194 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~~-------------------- 194 (840)
.||+|+|.|+ ++||+.|...-. .|+ ++.+.+. +++..|-|..+. ++..+.|.+.
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p-~l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 130 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEII-EFN--KHIKDFENKNVELLGISVDS-VYSHLAWKNMPIEKGGIGNVEFTLVSDINK 130 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHH-HHH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEEcCCCCCchHHHHH-HHH--HHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHhhhhcCccCCceEEEECCch
Confidence 5899999999 999999986432 111 1222222 344444444332 2211222111
Q ss_pred -HHHhcCC-----CCCCcEEEECCCCceeccc
Q 003187 195 -VQALYGG-----GGWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 195 -~~~~~g~-----~G~P~~vfl~p~g~~~~~~ 220 (840)
+...+|+ ..+|+++++|++|++++..
T Consensus 131 ~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~ 162 (221)
T 2c0d_A 131 DISKNYNVLYDNSFALRGLFIIDKNGCVRHQT 162 (221)
T ss_dssp HHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHcCCcccCCCccceEEEECCCCeEEEEE
Confidence 1111244 2579999999999998763
No 251
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=96.64 E-value=0.0076 Score=54.67 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
++.+++..+.++ ++.|+++||++|+.+.. .| +.++-.|..|.||... |+ +....+.+...+|...+|+.
T Consensus 9 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~-~L------~~~~i~~~~~di~~~~-~~-~~~~~~~l~~~~g~~tvP~i 77 (113)
T 3rhb_A 9 EESIRKTVTENT--VVIYSKTWCSYCTEVKT-LF------KRLGVQPLVVELDQLG-PQ-GPQLQKVLERLTGQHTVPNV 77 (113)
T ss_dssp HHHHHHHHHHSS--EEEEECTTCHHHHHHHH-HH------HHTTCCCEEEEGGGST-TH-HHHHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHHhcCC--EEEEECCCChhHHHHHH-HH------HHcCCCCeEEEeecCC-CC-hHHHHHHHHHHhCCCCcCEE
Confidence 556666666666 34489999999998763 22 3344567777676541 11 11223334445688999998
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
++ +|+.+.+
T Consensus 78 fi---~g~~igG 86 (113)
T 3rhb_A 78 FV---CGKHIGG 86 (113)
T ss_dssp EE---TTEEEES
T ss_pred EE---CCEEEcC
Confidence 44 6676644
No 252
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=96.62 E-value=0.0035 Score=65.85 Aligned_cols=97 Identities=14% Similarity=-0.081 Sum_probs=53.8
Q ss_pred cCCC-EEEEEeccCChhhhhhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHH---------------------H
Q 003187 137 RDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYM---------------------T 193 (840)
Q Consensus 137 e~Kp-I~l~~g~~wC~wC~~me~etf~d~eVa~~l-n~~FV~vkvD~ee~pd~~~~y~---------------------~ 193 (840)
.||+ ||++|.++||..|..+-. .|++ +.+.+ ++++..|-|+.+.... ...+. +
T Consensus 32 ~GK~vVL~~fpa~~CpvC~tEl~-~l~~--l~~ef~~~gv~VI~VS~Ds~~~-~~~w~~~~~~~~~~~i~fPil~D~~~~ 107 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTTEFV-SFAR--RYEDFQRLGVDLIGLSVDSVFS-HIKWKEWIERHIGVRIPFPIIADPQGT 107 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHHHHH-HHHH--THHHHHHTTEEEEEEESSCHHH-HHHHHHHHHHHTCCCCCSCEEECTTSH
T ss_pred CCCEEEEEEEcCCCCcChHHHHH-HHHH--HHHHHHhCCcEEEEEECCCHHH-HHHHHHHHHHhcCCCCceeEEECCchH
Confidence 5786 566889999999997543 2221 22222 2356666665543111 11111 1
Q ss_pred HHHHhcCCC-------CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 194 YVQALYGGG-------GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 194 ~~~~~~g~~-------G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
..+. +|+. ++|+++++||+|++.....|-.+.+ .++-++|+.|.
T Consensus 108 ia~~-ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~g----r~~~Ellr~I~ 158 (249)
T 3a2v_A 108 VARR-LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELG----RLVDEILRIVK 158 (249)
T ss_dssp HHHH-HTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBC----CCHHHHHHHHH
T ss_pred HHHH-hCCccccCCCcccceEEEECCCCeEEEEEecCCccc----chhHHHHHHHH
Confidence 1111 2543 8999999999999987654422211 14556665554
No 253
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=96.60 E-value=0.00097 Score=69.33 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.4
Q ss_pred hcCCCEEEEEeccCChhhhhhhhc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~e 159 (840)
..+|.+++.|+..||++|+.++.+
T Consensus 95 ~~ak~~v~~F~D~~Cp~C~~~~~~ 118 (241)
T 1v58_A 95 KDAPVIVYVFADPFCPYCKQFWQQ 118 (241)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHHH
T ss_pred CCCCeEEEEEECCCChhHHHHHHH
Confidence 356778999999999999999864
No 254
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=96.52 E-value=0.003 Score=60.83 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=23.9
Q ss_pred CcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003187 205 PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 205 P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
|+++++|++|++++....-.. ...+.+-++|+.|.+
T Consensus 127 p~~~liD~~G~i~~~~~g~~~---~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 127 RAVFVLDTDNTIRYVEYVDNI---NSEPNFEAAIAAAKA 162 (163)
T ss_dssp CEEEEECTTCBEEEEEECSBT---TSCCCHHHHHHHHHH
T ss_pred EEEEEEcCCCeEEEEEecCCc---CCCCCHHHHHHHHHh
Confidence 999999999999876321111 124567777776653
No 255
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=96.49 E-value=0.0039 Score=52.57 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=38.1
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~ 218 (840)
++.|+++||++|+.+.. .++ .++-.|. ++|.++.|++.+.+. . .|+.+.|+.+ . +|+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l~------~~~i~~~--~vdi~~~~~~~~~~~----~-~g~~~vP~~~-~--~g~~~~ 62 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKR-AME------NRGFDFE--MINVDRVPEAAEALR----A-QGFRQLPVVI-A--GDLSWS 62 (81)
T ss_dssp EEEEECTTCHHHHHHHH-HHH------HTTCCCE--EEETTTCHHHHHHHH----H-TTCCSSCEEE-E--TTEEEE
T ss_pred EEEEcCCCChhHHHHHH-HHH------HCCCCeE--EEECCCCHHHHHHHH----H-hCCCccCEEE-E--CCEEEe
Confidence 45689999999999864 222 1233444 567776676554332 2 4889999984 4 566653
No 256
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=96.44 E-value=0.0059 Score=54.85 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCEEEEEec-----cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGY-----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~-----~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~ 202 (840)
.+-+++..+.+ +|.| |+. +||++|+.+.. .| +.++-.|.. +|+++.|++...+ ...+|..
T Consensus 7 ~~~~~~~i~~~-~vvv-f~~g~~~~~~C~~C~~~~~-~L------~~~~i~~~~--vdi~~~~~~~~~l----~~~~g~~ 71 (105)
T 2yan_A 7 EERLKVLTNKA-SVML-FMKGNKQEAKCGFSKQILE-IL------NSTGVEYET--FDILEDEEVRQGL----KAYSNWP 71 (105)
T ss_dssp HHHHHHHHTSS-SEEE-EESBCSSSBCTTHHHHHHH-HH------HHHTCCCEE--EEGGGCHHHHHHH----HHHHTCC
T ss_pred HHHHHHHhccC-CEEE-EEecCCCCCCCccHHHHHH-HH------HHCCCCeEE--EECCCCHHHHHHH----HHHHCCC
Confidence 34555565555 5666 444 99999998754 22 222334554 4555556543332 3335888
Q ss_pred CCCcEEEECCCCceecc
Q 003187 203 GWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~ 219 (840)
++|+.+ + +|+.+.+
T Consensus 72 ~vP~v~-i--~g~~igg 85 (105)
T 2yan_A 72 TYPQLY-V--KGELVGG 85 (105)
T ss_dssp SSCEEE-E--TTEEEEC
T ss_pred CCCeEE-E--CCEEEeC
Confidence 999874 4 5776644
No 257
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=96.35 E-value=0.15 Score=56.66 Aligned_cols=131 Identities=7% Similarity=-0.116 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe--ec----------CCC
Q 003187 540 NGLVISSFARASKILK-SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FR----------NGP 606 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~-d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~--~~----------~g~ 606 (840)
-|.+ +.|+.+++... + +++++.++++.+++.+...++.+|.++.. .+ +..
T Consensus 209 aGi~-~~L~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~g~~wp~g~~~~~~~~~~~~~~~~ 271 (409)
T 2g0d_A 209 AGVG-CILAYAHIKGYSN----------------EASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREAS 271 (409)
T ss_dssp HHHH-HHHHHHHHHTCCC----------------HHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCS
T ss_pred HHHH-HHHHHHHHhCCCC----------------hhHHHHHHHHHHHHHHHHhcCCCCCcCCCccccHhhhcccccccCC
Confidence 4554 77888775431 3 78999999999999887665444542111 11 112
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHH
Q 003187 607 SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV 686 (840)
Q Consensus 607 ~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~ 686 (840)
....++...-+=.+.+++.+|++++|++|++.|++..+.+.++ ++... +...=-|.+=
T Consensus 272 ~~~~~WChG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~~~~~------~~~~~----------------~~~LCHG~aG 329 (409)
T 2g0d_A 272 FIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQR------KLGID----------------SYMICHGYSG 329 (409)
T ss_dssp CCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------CTTCC----------------SCCTTTSHHH
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------ccCCC----------------CCCCCChHHH
Confidence 2345677777888999999999999999999999998888765 11100 0112235555
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHH
Q 003187 687 SVINLVRLASIVAGSKSDYYRQNAEH 712 (840)
Q Consensus 687 ~a~~LlrL~~lt~~~~~~~y~~~A~~ 712 (840)
.+..|+++++.+++ ++|.+++.+
T Consensus 330 ~~~~l~~l~~~~~~---~~~~~~a~~ 352 (409)
T 2g0d_A 330 LIEICSLFKRLLNT---KKFDSYMEE 352 (409)
T ss_dssp HHHHHHHHHHHHCC---CTTHHHHHH
T ss_pred HHHHHHHHHHHhCC---HHHHHHHHH
Confidence 66778899999986 568888776
No 258
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=96.34 E-value=0.011 Score=52.62 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=40.3
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
+-++.+||+||+...+ +|+++ .-...+|+++.|+..+.+. +...|....|+.+| .||+.+.+
T Consensus 7 ~vYs~~~Cp~C~~aK~----------~L~~~gi~y~~idi~~d~~~~~~~~---~~~~G~~tVP~I~i--~Dg~~l~~ 69 (92)
T 2lqo_A 7 TIYTTSWCGYCLRLKT----------ALTANRIAYDEVDIEHNRAAAEFVG---SVNGGNRTVPTVKF--ADGSTLTN 69 (92)
T ss_dssp EEEECTTCSSHHHHHH----------HHHHTTCCCEEEETTTCHHHHHHHH---HHSSSSSCSCEEEE--TTSCEEES
T ss_pred EEEcCCCCHhHHHHHH----------HHHhcCCceEEEEcCCCHHHHHHHH---HHcCCCCEeCEEEE--eCCEEEeC
Confidence 4478999999998653 45443 2223567777777654442 22347888998776 67777654
No 259
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=96.31 E-value=0.0096 Score=57.96 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=46.3
Q ss_pred cCCCEEEEEeccCCh-hhhhhhhcccCCHHHHHHHh---c--CeEEEEEcCCCCccHHHHHH------------------
Q 003187 137 RDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLN---D--WFVSIKVDREERPDVDKVYM------------------ 192 (840)
Q Consensus 137 e~KpI~l~~g~~wC~-wC~~me~etf~d~eVa~~ln---~--~FV~vkvD~ee~pd~~~~y~------------------ 192 (840)
.||+|+|.|+++||+ .|...-.. + .++.+.+. + .+|.|-+|-.+.|+.-+.|.
T Consensus 27 ~Gk~vll~F~~t~C~~~C~~~~~~-l--~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~ 103 (170)
T 3me7_A 27 KGKPIILSPIYTHCRAACPLITKS-L--LKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTS 103 (170)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHH-H--HTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSH
T ss_pred CCCEEEEEEECCCCCchhHHHHHH-H--HHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCH
Confidence 399999999999997 69875442 2 22334442 2 35555566322333222221
Q ss_pred ----HHHHHhcC---------CCCCCcEEEECCCCceecc
Q 003187 193 ----TYVQALYG---------GGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 193 ----~~~~~~~g---------~~G~P~~vfl~p~g~~~~~ 219 (840)
+.++.+ | ....|+++++||+|+++..
T Consensus 104 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~lID~~G~i~~~ 142 (170)
T 3me7_A 104 EDLFKLLDAI-DFRFMTAGNDFIHPNVVVVLSPELQIKDY 142 (170)
T ss_dssp HHHHHHHHHT-TCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred HHHHHHHHHC-CeEEecCCCccccCceEEEECCCCeEEEE
Confidence 222221 2 2345889999999998754
No 260
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=96.30 E-value=0.014 Score=58.36 Aligned_cols=43 Identities=16% Similarity=-0.014 Sum_probs=29.7
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e 182 (840)
.+|++++.|+..||++|+.|+... +++.+.+.++++..+++..
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l---~~~~~~~~~~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVL---SKHAKSFKDDMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHTTCCTTEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHH---HHHHHHCCCCeEEEEecCC
Confidence 368899999999999999998522 3444333335666666553
No 261
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=96.23 E-value=0.014 Score=52.22 Aligned_cols=68 Identities=24% Similarity=0.391 Sum_probs=42.6
Q ss_pred EEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003187 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (840)
Q Consensus 141 I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~ 218 (840)
-++.|+++||++|+.+.. +.+.++-.|..+.||..+..+ ...+.+.+...+|..++|+.++ + +|+.+.
T Consensus 23 ~v~ly~~~~Cp~C~~ak~-------~L~~~~i~y~~vdI~~~~~~~-~~~~~~~l~~~~g~~~vP~l~i-~-~~~~ig 90 (103)
T 3nzn_A 23 KVIMYGLSTCVWCKKTKK-------LLTDLGVDFDYVYVDRLEGKE-EEEAVEEVRRFNPSVSFPTTII-N-DEKAIV 90 (103)
T ss_dssp CEEEEECSSCHHHHHHHH-------HHHHHTBCEEEEEGGGCCHHH-HHHHHHHHHHHCTTCCSCEEEE-T-TTEEEE
T ss_pred eEEEEcCCCCchHHHHHH-------HHHHcCCCcEEEEeeccCccc-HHHHHHHHHHhCCCCccCEEEE-C-CCEEEE
Confidence 344589999999999863 233455578777777643222 2233344445568999999876 2 235553
No 262
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=96.17 E-value=0.0072 Score=51.63 Aligned_cols=66 Identities=14% Similarity=-0.002 Sum_probs=41.9
Q ss_pred CEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC-----CCCCcEEEECCCC
Q 003187 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG-----GGWPLSVFLSPDL 214 (840)
Q Consensus 140 pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~-----~G~P~~vfl~p~g 214 (840)
+.++.|+++||++|+.+.. +.+.++-.|-.+.||..+.+.... .+...+|. .++|+.++ +|
T Consensus 4 m~v~ly~~~~Cp~C~~~~~-------~L~~~~i~~~~~~vd~~~~~~~~~----el~~~~g~~~~~~~~vP~i~i---~g 69 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQ-------WFEENNIAFDETIIDDYAQRSKFY----DEMNQSGKVIFPISTVPQIFI---DD 69 (89)
T ss_dssp CCEEEEECTTCHHHHHHHH-------HHHHTTCCCEEEECCSHHHHHHHH----HHHHTTTCCSSCCCSSCEEEE---TT
T ss_pred eEEEEEEcCCChhHHHHHH-------HHHHcCCCceEEEeecCCChhHHH----HHHHHhCCCCCCCCccCEEEE---CC
Confidence 3456688999999999753 233444567777777754332211 12334577 89999865 67
Q ss_pred ceecc
Q 003187 215 KPLMG 219 (840)
Q Consensus 215 ~~~~~ 219 (840)
+.+.+
T Consensus 70 ~~i~g 74 (89)
T 3msz_A 70 EHIGG 74 (89)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 76643
No 263
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=96.14 E-value=0.018 Score=52.66 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+.+++..++++.++ |+.+||++|+.... .+ +.++-.|..+.||..+.+. ...+.+...+|...+|..
T Consensus 7 ~~~~~~~i~~~~v~v--y~~~~Cp~C~~ak~-~L------~~~~i~~~~~dvd~~~~~~---~~~~~l~~~~g~~tvP~v 74 (114)
T 3h8q_A 7 RRHLVGLIERSRVVI--FSKSYCPHSTRVKE-LF------SSLGVECNVLELDQVDDGA---RVQEVLSEITNQKTVPNI 74 (114)
T ss_dssp HHHHHHHHHHCSEEE--EECTTCHHHHHHHH-HH------HHTTCCCEEEETTTSTTHH---HHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHhccCCEEE--EEcCCCCcHHHHHH-HH------HHcCCCcEEEEecCCCChH---HHHHHHHHHhCCCccCEE
Confidence 456777777666444 89999999998753 22 2234467666666532211 122333344588899998
Q ss_pred EEECCCCceecc
Q 003187 208 VFLSPDLKPLMG 219 (840)
Q Consensus 208 vfl~p~g~~~~~ 219 (840)
++ +|+.+.|
T Consensus 75 fi---~g~~igG 83 (114)
T 3h8q_A 75 FV---NKVHVGG 83 (114)
T ss_dssp EE---TTEEEES
T ss_pred EE---CCEEEeC
Confidence 76 6776644
No 264
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=96.13 E-value=0.021 Score=58.31 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=18.9
Q ss_pred hcCCCEEEEEeccCChhhhhhh
Q 003187 136 KRDVPIFLSIGYSTCHWCHVME 157 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me 157 (840)
=.||+|+|.|+++||+.|..|.
T Consensus 54 ~~GKvvll~FwAt~C~~c~e~p 75 (215)
T 2i3y_A 54 YVGKHILFVNVATYCGLTAQYP 75 (215)
T ss_dssp GTTSEEEEEEECSSSGGGGGHH
T ss_pred hCCCEEEEEEeCCCCCChHhHH
Confidence 3589999999999999997543
No 265
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=96.05 E-value=0.0067 Score=58.76 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=17.5
Q ss_pred cCCCEEEEEe-ccCChhhhhh
Q 003187 137 RDVPIFLSIG-YSTCHWCHVM 156 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~m 156 (840)
.+|+++|.|+ ++||+.|...
T Consensus 46 ~gk~vvl~f~~~~~C~~C~~~ 66 (171)
T 2yzh_A 46 KDVVQVIITVPSLDTPVCETE 66 (171)
T ss_dssp CSSEEEEEECSCTTSHHHHHH
T ss_pred CCCeEEEEEECCCCCCchHHH
Confidence 4899999998 8999999864
No 266
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=96.03 E-value=0.03 Score=57.86 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=26.8
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHH
Q 003187 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (840)
.|.++++|++|++.+....-. ..+.+++-++|+.|...
T Consensus 137 ~p~tfvID~dG~I~~~~~~~~---~~~~pd~~evl~~L~~l 174 (224)
T 3keb_A 137 SPAIILADAANVVHYSERLAN---TRDFFDFDAIEKLLQEG 174 (224)
T ss_dssp CCEEEEECTTCBEEEEEECSB---TTCCCCHHHHHHHHHHH
T ss_pred cCEEEEEcCCCEEEEEEecCC---CCCCCCHHHHHHHHHHh
Confidence 699999999999988643211 22346788888777654
No 267
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=95.99 E-value=0.013 Score=49.15 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=37.7
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
++.|+++||++|+.+.. .+ +..+-.|..|.|| +.++....+. ..+|..++|+.++ +|+.+.+
T Consensus 3 i~~y~~~~C~~C~~~~~-~l------~~~~i~~~~~~i~--~~~~~~~~~~----~~~~~~~vP~l~~---~g~~i~g 64 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKA-LL------SSKGVSFQELPID--GNAAKREEMI----KRSGRTTVPQIFI---DAQHIGG 64 (82)
T ss_dssp EEEEECSSCHHHHHHHH-HH------HHHTCCCEEEECT--TCSHHHHHHH----HHHSSCCSCEEEE---TTEEEES
T ss_pred EEEEECCCChhHHHHHH-HH------HHCCCCcEEEECC--CCHHHHHHHH----HHhCCCCcCEEEE---CCEEEeC
Confidence 34589999999998763 22 2233356655444 4455443332 2348899999854 6776643
No 268
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=95.99 E-value=0.008 Score=49.58 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=37.5
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~ 218 (840)
++.|+++||++|+.+.. .+ +.++-.|. .+|.++.++....+ + ..|..+.|+.++ +|+.+.
T Consensus 3 i~~y~~~~C~~C~~~~~-~l------~~~~i~~~--~~di~~~~~~~~~~----~-~~~~~~vP~l~~---~g~~~~ 62 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKK-AL------DRAGLAYN--TVDISLDDEARDYV----M-ALGYVQAPVVEV---DGEHWS 62 (75)
T ss_dssp EEEEECTTCHHHHHHHH-HH------HHTTCCCE--EEETTTCHHHHHHH----H-HTTCBCCCEEEE---TTEEEE
T ss_pred EEEEeCCCChHHHHHHH-HH------HHcCCCcE--EEECCCCHHHHHHH----H-HcCCCccCEEEE---CCeEEc
Confidence 45689999999998754 22 12232444 45666666544322 2 248899999874 677643
No 269
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=95.98 E-value=0.58 Score=54.06 Aligned_cols=284 Identities=14% Similarity=0.143 Sum_probs=159.1
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHH
Q 003187 369 RWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVE 448 (840)
Q Consensus 369 ~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~ 448 (840)
+-.|+-||-. -+.|..++-||.+++++.+++.|.+..+-|+--+-.|.|-=|...+-...... ..+
T Consensus 162 d~~VsvFETt----IR~LGGLLSAy~Lsgd~~lL~kA~dLadrLlpAFdTptgiP~~~vnl~~g~~~--~~~-------- 227 (538)
T 1x9d_A 162 DVDVNLFEST----IRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAH--PPR-------- 227 (538)
T ss_dssp SCEEEHHHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSTTSCCCSEEETTTCCEE--CCT--------
T ss_pred Cceeehhhee----hhhhhhhhhHHHhcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeeecccccC--CCC--------
Confidence 3456668854 45888889999999999999999999999998887777644443332110000 000
Q ss_pred HhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCc----hHHHHhcCCCHHHHHHHHHHHHHHHHhhhc
Q 003187 449 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS----SASASKLGMPLEKYLNILGECRRKLFDVRS 524 (840)
Q Consensus 449 ~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~----~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~ 524 (840)
+.+.+.+.-..++ ..++...|- .+..+..+.+.+.|.+.|.
T Consensus 228 ---------------------------------~~~~s~lAe~GSl~LEF~~LS~LTGd--~~Y~~~a~r~~~~l~~~~~ 272 (538)
T 1x9d_A 228 ---------------------------------WTSDSTVAEVTSIQLEFRELSRLTGD--KKFQEAVEKVTQHIHGLSG 272 (538)
T ss_dssp ---------------------------------TCSEEEHHHHHSSHHHHHHHHHHHCC--THHHHHHHHHHHHHHTCSC
T ss_pred ---------------------------------cCCCceeccccceeeeHHHHHHHhCC--cHHHHHHHHHHHHHHhccc
Confidence 0011111111110 012222221 2344556667777776552
Q ss_pred CCCCCCC-----cch-------hhhcHHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Q 003187 525 KRPRPHL-----DDK-------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH 589 (840)
Q Consensus 525 ~R~~P~~-----DdK-------iltsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~ 589 (840)
..|.+ |.. -..+|.|..-+ =|.+.+..++. ..+.|+++=.++++-+++|
T Consensus 273 --~~~GL~p~~i~~~tG~~~~~~~~~lGa~~DS~YEYLlK~~il~g~--------------~d~~y~~my~~a~~~i~~~ 336 (538)
T 1x9d_A 273 --KKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGK--------------QETQLLEDYVEAIEGVRTH 336 (538)
T ss_dssp --CBTTBCCSEEETTTCCEESTTEECSSTTTHHHHHHHHHHHHHTTS--------------CCHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCcceEEeCCCCCccCCcceeecCCccHHHHHHHHHHHHcCC--------------chHHHHHHHHHHHHHHHHH
Confidence 12211 110 02344444433 45667777663 1268999999999999999
Q ss_pred ccccC--CCe-EEEeecCCCCCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcccccCCc----cccC
Q 003187 590 LYDEQ--THR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEF-GSGTKWLVWAIELQNTQDELFLDREGGG----YFNT 661 (840)
Q Consensus 590 l~d~~--~G~-l~~~~~~g~~~~~~~leDyA~~i~aLl~LYea-Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg----yf~t 661 (840)
+.... .+. +...+..|.. ....+--+.++-|++.|..- ..+.++++.|++|.+.+...+....+|- |.+.
T Consensus 337 L~~~~~~~~~~~v~~~~~g~~--~~~~~hL~cF~gG~~aLgg~~~~~~~~l~~a~~L~~tC~~~Y~~~~tGl~PE~~~~~ 414 (538)
T 1x9d_A 337 LLRHSEPSKLTFVGELAHGRF--SAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFN 414 (538)
T ss_dssp TEEECTTTCCEEECEEETTEE--ECEEEGGGGHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTSTTSCCCSEEECC
T ss_pred hccCCCCCCceEEEeccCCcc--CcccchHhhhhhhHHHhcCcccCcHHHHHHHHHHHHHHHHHHHhcccCCCceEEEec
Confidence 85421 222 3323343321 12233345567788877664 4567899999999998877765433442 2222
Q ss_pred CCC---CCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 003187 662 TGE---DPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 727 (840)
Q Consensus 662 ~~~---~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~ 727 (840)
..+ .+...++. .|...|= --..++.+.-|+++||+ +.|++.+.++++++.... +.+.+
T Consensus 415 ~~~~~~~~~~~~~~---~d~~y~L-RPE~IES~fylyR~TgD---~~yre~gw~~f~ai~k~~-rt~~G 475 (538)
T 1x9d_A 415 LYPQPGRRDVEVKP---ADRHNLL-RPETVESLFYLYRVTGD---RKYQDWGWEILQSFSRFT-RVPSG 475 (538)
T ss_dssp SSCCTTCCSCBCCG---GGCCBCC-CCHHHHHHHHHHHHHCC---THHHHHHHHHHHHHHHHT-BCTTS
T ss_pred cCCCccccceeeec---cCcccCC-ChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhc-ccccC
Confidence 110 11111111 0110000 01688999999999996 899999999999876544 44444
No 270
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=95.95 E-value=0.011 Score=61.27 Aligned_cols=79 Identities=6% Similarity=-0.069 Sum_probs=46.2
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHH----------------------
Q 003187 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM---------------------- 192 (840)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~---------------------- 192 (840)
.||+|+|.|++ +||+.|...-. .| .++.+.+. +++..|-|..+. ++....|.
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el~-~l--~~l~~~~~~~gv~vv~Is~D~-~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 151 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEII-AF--SDRVHEFRAINTEVVACSVDS-QFTHLAWIITPRKQGGLGPMKIPLLSDLTH 151 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHH-HH--HHHHHHHHTTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTS
T ss_pred CCCEEEEEEECCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEECCC-HHHHHHHHHHHHhhcCCCCCceeEEeCchH
Confidence 48999999999 99999987432 22 22333333 244444444432 21111221
Q ss_pred HHHHHhcCCC------CCCcEEEECCCCceeccc
Q 003187 193 TYVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 193 ~~~~~~~g~~------G~P~~vfl~p~g~~~~~~ 220 (840)
+..+. +|+. ..|+++++|++|++++..
T Consensus 152 ~v~~~-ygv~~~~~g~~~p~~flID~~G~I~~~~ 184 (240)
T 3qpm_A 152 QISKD-YGVYLEDQGHTLRGLFIIDEKGVLRQIT 184 (240)
T ss_dssp HHHHH-TTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHH-hCCccccCCCccceEEEEcCCCeEEEEE
Confidence 11122 2443 479999999999998764
No 271
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=95.90 E-value=0.0084 Score=57.26 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=42.1
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHH--------------HHHhc
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTY--------------VQALY 199 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~pd~~~~y~~~--------------~~~~~ 199 (840)
.+|+|+|.|+ ++||+.|...-. .|+ ++.+.+.+ .+|.|-+| .++..+.|.+. +...+
T Consensus 34 k~~~vvl~f~~~~~c~~C~~~~~-~l~--~~~~~~~~~~~vv~is~d---~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 107 (159)
T 2a4v_A 34 NNRVVVFFVYPRASTPGSTRQAS-GFR--DNYQELKEYAAVFGLSAD---SVTSQKKFQSKQNLPYHLLSDPKREFIGLL 107 (159)
T ss_dssp HCSEEEEEECSSSSSHHHHHHHH-HHH--HHHHHHTTTCEEEEEESC---CHHHHHHHHHHHTCSSEEEECTTCHHHHHH
T ss_pred CCCeEEEEEcCCCCCCCHHHHHH-HHH--HHHHHHHhCCcEEEEeCC---CHHHHHHHHHHhCCCceEEECCccHHHHHh
Confidence 3458999986 999999986432 221 22333332 35555444 23222223211 11123
Q ss_pred CCCCCC------cEEEECCCCceecc
Q 003187 200 GGGGWP------LSVFLSPDLKPLMG 219 (840)
Q Consensus 200 g~~G~P------~~vfl~p~g~~~~~ 219 (840)
|+.+.| +++++ ++|++.+.
T Consensus 108 gv~~~p~~g~~~~~~li-~~G~i~~~ 132 (159)
T 2a4v_A 108 GAKKTPLSGSIRSHFIF-VDGKLKFK 132 (159)
T ss_dssp TCBSSSSSCBCCEEEEE-ETTEEEEE
T ss_pred CCcccccCCccceEEEE-cCCEEEEE
Confidence 666666 78888 99988765
No 272
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=95.87 E-value=0.011 Score=59.93 Aligned_cols=79 Identities=6% Similarity=-0.066 Sum_probs=44.9
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHH----------------------
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM---------------------- 192 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~---------------------- 192 (840)
.||+|+|.|+ ++||+.|...-. .|+ ++.+.+. +++..|-|..+. ++..+.|.
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~~-~l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 122 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEII-AFG--DRLEEFRSINTEVVACSVDS-QFTHLAWINTPRRQGGLGPIRIPLLSDLTH 122 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHH-HHH--HTHHHHHTTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCSCSSCEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHhhhccCccCCceEEEECCch
Confidence 5899999999 999999986432 121 1222222 244444443331 21111111
Q ss_pred HHHHHhcCCC------CCCcEEEECCCCceeccc
Q 003187 193 TYVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 193 ~~~~~~~g~~------G~P~~vfl~p~g~~~~~~ 220 (840)
+..+. +|+. .+|+++++|++|++++..
T Consensus 123 ~~~~~-ygv~~~~~g~~~p~~~lID~~G~I~~~~ 155 (211)
T 2pn8_A 123 QISKD-YGVYLEDSGHTLRGLFIIDDKGILRQIT 155 (211)
T ss_dssp HHHHH-TTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHH-cCCcccCCCcccceEEEECCCCEEEEEE
Confidence 11111 2442 589999999999998764
No 273
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=95.81 E-value=0.033 Score=54.77 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=19.9
Q ss_pred cCCCEEEEEeccCChhhhhhhhcc
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVES 160 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~et 160 (840)
.+|.+++.|+..+|+||+.++...
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l 47 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKL 47 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCeEEEEEECCCChhHhhhhHHH
Confidence 356788999999999999998643
No 274
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=95.78 E-value=0.01 Score=64.61 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=51.4
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC--CCccHHHHHHHHHHHhcCCCC--CCcEEEE
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGG--WPLSVFL 210 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e--e~pd~~~~y~~~~~~~~g~~G--~P~~vfl 210 (840)
....++++|.|+++||..|+.+.. .| .++++.+...+..+.||.+ +.+++.+.| |+.+ +|+.+++
T Consensus 132 ~~~~~~~~v~F~~~~~~~~~~~~~-~~--~~~A~~~~~~i~f~~vd~~~~~~~~~~~~f--------gi~~~~~P~~~~~ 200 (361)
T 3uem_A 132 GGEIKTHILLFLPKSVSDYDGKLS-NF--KTAAESFKGKILFIFIDSDHTDNQRILEFF--------GLKKEECPAVRLI 200 (361)
T ss_dssp SCSCCEEEEEECCSSSSSHHHHHH-HH--HHHHGGGTTTCEEEEECTTSGGGHHHHHHT--------TCCTTTCSEEEEE
T ss_pred cCCCCcEEEEEEeCCchhHHHHHH-HH--HHHHHHccCceEEEEecCChHHHHHHHHHc--------CCCccCCccEEEE
Confidence 344567789999999999998875 22 4677777767888999988 455555444 7766 9999999
Q ss_pred CCCCc
Q 003187 211 SPDLK 215 (840)
Q Consensus 211 ~p~g~ 215 (840)
+.++.
T Consensus 201 ~~~~~ 205 (361)
T 3uem_A 201 TLEEE 205 (361)
T ss_dssp ECC--
T ss_pred EcCCc
Confidence 98543
No 275
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=95.78 E-value=0.058 Score=54.63 Aligned_cols=20 Identities=5% Similarity=-0.245 Sum_probs=17.9
Q ss_pred cCCCEEEEEeccCChhhhhh
Q 003187 137 RDVPIFLSIGYSTCHWCHVM 156 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~m 156 (840)
.||+|+|.|+++||+.|..|
T Consensus 37 kGKvvll~F~At~C~~c~e~ 56 (207)
T 2r37_A 37 AGKYVLFVNVASYGGLTGQY 56 (207)
T ss_dssp TTSEEEEEEECSSSTTTTHH
T ss_pred CCCEEEEEEeCCCCCChHHH
Confidence 58999999999999999544
No 276
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=95.77 E-value=0.025 Score=53.05 Aligned_cols=79 Identities=10% Similarity=0.193 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhh-hhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~m-e~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
.+.++...++++ | +.|+.+||++|+.. .. .+..... -+-.|..|.||.++ +- ....+.+...+|..++|.
T Consensus 27 ~~~v~~~i~~~~-V-vvy~~~~Cp~C~~a~k~-~L~~~~~---~~i~~~~vdvd~~~--~~-~~~~~~L~~~~g~~tVP~ 97 (129)
T 3ctg_A 27 VAHVKDLIGQKE-V-FVAAKTYCPYCKATLST-LFQELNV---PKSKALVLELDEMS--NG-SEIQDALEEISGQKTVPN 97 (129)
T ss_dssp HHHHHHHHHHSS-E-EEEECTTCHHHHHHHHH-HHTTSCC---CGGGEEEEEGGGST--TH-HHHHHHHHHHHSCCSSCE
T ss_pred HHHHHHHHcCCC-E-EEEECCCCCchHHHHHH-HHHhcCc---cCCCcEEEEccccC--CH-HHHHHHHHHHhCCCCCCE
Confidence 455666666665 3 45789999999987 43 3322110 01346666666653 21 112223334458889998
Q ss_pred EEEECCCCceec
Q 003187 207 SVFLSPDLKPLM 218 (840)
Q Consensus 207 ~vfl~p~g~~~~ 218 (840)
. |+ +|+.+.
T Consensus 98 v-fi--~g~~ig 106 (129)
T 3ctg_A 98 V-YI--NGKHIG 106 (129)
T ss_dssp E-EE--TTEEEE
T ss_pred E-EE--CCEEEc
Confidence 5 44 456654
No 277
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=95.67 E-value=0.015 Score=52.06 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=39.3
Q ss_pred CEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhc-CCCCCCcEEEECCCCceec
Q 003187 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLM 218 (840)
Q Consensus 140 pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~-g~~G~P~~vfl~p~g~~~~ 218 (840)
.-++-|+++||++|+.+.+ .| +.++-.|.. +|+++.|+....+ ..++ |..++|+. |+ +|+.+.
T Consensus 16 ~~v~vy~~~~Cp~C~~ak~-~L------~~~~i~y~~--idI~~~~~~~~~l----~~~~~g~~~vP~i-fi--~g~~ig 79 (99)
T 3qmx_A 16 AKIEIYTWSTCPFCMRALA-LL------KRKGVEFQE--YCIDGDNEAREAM----AARANGKRSLPQI-FI--DDQHIG 79 (99)
T ss_dssp CCEEEEECTTCHHHHHHHH-HH------HHHTCCCEE--EECTTCHHHHHHH----HHHTTTCCCSCEE-EE--TTEEEE
T ss_pred CCEEEEEcCCChhHHHHHH-HH------HHCCCCCEE--EEcCCCHHHHHHH----HHHhCCCCCCCEE-EE--CCEEEe
Confidence 3344589999999999864 22 233445655 4555556544333 3445 88899976 44 566664
Q ss_pred c
Q 003187 219 G 219 (840)
Q Consensus 219 ~ 219 (840)
+
T Consensus 80 G 80 (99)
T 3qmx_A 80 G 80 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 278
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=95.58 E-value=0.025 Score=55.82 Aligned_cols=80 Identities=6% Similarity=-0.174 Sum_probs=45.7
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHHH------------------H
Q 003187 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV------------------Q 196 (840)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~~~------------------~ 196 (840)
.||+|+|.|++ +||+.|...-. .|+ ++.+.+. +++..|-|..+. ++..+.|.+.. .
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~e~~-~l~--~~~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 104 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPTELG-DVA--DHYEELQKLGVDVYSVSTDT-HFTHKAWHSSSETIAKIKYAMIGDPTGALT 104 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHH-HHH--HHHHHHHHTTEEEEEEESSC-HHHHHHHHHHCTTGGGCCSEEEECTTSHHH
T ss_pred CCCeEEEEEECCCCCCccHHHHH-HHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHcCcccCCceeEEECCchHHH
Confidence 48999999995 99999986432 121 2222232 345555554442 32222332211 0
Q ss_pred HhcCCC----C--CCcEEEECCCCceeccc
Q 003187 197 ALYGGG----G--WPLSVFLSPDLKPLMGG 220 (840)
Q Consensus 197 ~~~g~~----G--~P~~vfl~p~g~~~~~~ 220 (840)
..+|+. | .|+++++|++|++++..
T Consensus 105 ~~ygv~~~~~g~~~p~~~lID~~G~i~~~~ 134 (186)
T 1n8j_A 105 RNFDNMREDEGLADRATFVVDPQGIIQAIE 134 (186)
T ss_dssp HHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHhCCccCCCCceeeEEEEECCCCeEEEEE
Confidence 112332 3 69999999999998763
No 279
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=95.53 E-value=0.22 Score=57.51 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCe---EEEeecC---CCCCC-CCCcc-hHH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHR---LQHSFRN---GPSKA-PGFLD-DYA---FLISGLLDLYEFGSGTKWLVWAIE 641 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~---l~~~~~~---g~~~~-~~~le-DyA---~~i~aLl~LYeaTgd~~yL~~A~~ 641 (840)
+++++.|+++.+-.........+|. .++.... +.... ....+ -|- .+|+.+.-||++|||+.|++++.+
T Consensus 382 ~~~l~~a~~L~~tC~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~d~~y~LRPE~IES~fylyR~TgD~~yre~gw~ 461 (538)
T 1x9d_A 382 ASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWE 461 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTSCCCSEEECCSSCCTTCCSCBCCGGGCCBCCCCHHHHHHHHHHHHHCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCceEEEeccCCCccccceeeeccCcccCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6799999999876554433222342 2221110 11110 01111 122 789999999999999999999999
Q ss_pred HHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003187 642 LQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 700 (840)
Q Consensus 642 L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~ 700 (840)
+++.++++..-+ .|||-...+ +........++..+| .-+++-|--||-+..+
T Consensus 462 ~f~ai~k~~rt~-~Ggya~i~d----V~~~~~~~~~D~mES--FfLAETLKYlYLLFsd 513 (538)
T 1x9d_A 462 ILQSFSRFTRVP-SGGYSSINN----VQDPQKPEPRDKMES--FFLGETLKYLFLLFSD 513 (538)
T ss_dssp HHHHHHHHTBCT-TSCBCCBSC----TTCSSCCCBCSCBCH--HHHHTHHHHHHHHHCC
T ss_pred HHHHHHHhcccc-cCCcccccc----ccCCCCCCcCCCccc--HHHHHHHHHHHHhcCC
Confidence 999999988643 444543222 100011122333443 3567777777777764
No 280
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=95.52 E-value=0.015 Score=61.12 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=17.8
Q ss_pred cCCCEEEEEe-ccCChhhhhh
Q 003187 137 RDVPIFLSIG-YSTCHWCHVM 156 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~m 156 (840)
.||+|+|.|+ ++||..|...
T Consensus 90 kGK~vvL~F~~a~~cp~C~~e 110 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTE 110 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHH
T ss_pred CCCeEEEEEECCCCCCchHHH
Confidence 5899999998 9999999864
No 281
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=95.48 E-value=0.028 Score=55.49 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhc
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVE 159 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~e 159 (840)
.+|++++.|+..||+||+.++..
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~ 43 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPL 43 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHH
T ss_pred CCCcEEEEEECCCChhHHHHhHH
Confidence 47888999999999999998753
No 282
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=95.32 E-value=1.2 Score=50.77 Aligned_cols=284 Identities=15% Similarity=0.110 Sum_probs=154.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccccccccccchhHHHh
Q 003187 371 HVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDI 450 (840)
Q Consensus 371 ~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~v 450 (840)
.|+-||- |-+.|-.++-||.+++++.|++.|.+..+.|+--+-.|.|-=|...+-....... .+..
T Consensus 100 ~vsvFET----tIR~LGGLLSAy~Lsgd~~lL~kA~dLad~LlpAFdTptgiP~~~vnl~~g~~~~--~~~~-------- 165 (478)
T 1nxc_A 100 EVSVFEV----NIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGRN--WPWA-------- 165 (478)
T ss_dssp EEEHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSSSSCCCSEEETTTCCEEC--CTTS--------
T ss_pred ccchhhe----ehhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCC--Cccc--------
Confidence 4666775 5568999999999999999999999999999988877776444443322100000 0000
Q ss_pred hhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCc----hHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCC
Q 003187 451 LGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS----SASASKLGMPLEKYLNILGECRRKLFDVRSKR 526 (840)
Q Consensus 451 Lg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~----~~~a~~~g~~~e~l~~~l~~~r~kL~~~R~~R 526 (840)
-.|.+++.-..+. ..++...|- .+..+..+.+++.|.+.+.
T Consensus 166 -------------------------------~~~~s~lAe~gsl~LEF~~LS~lTGd--~~Y~~~a~~~~~~l~~~~~-- 210 (478)
T 1nxc_A 166 -------------------------------SGGSSILAEFGTLHLEFMHLSHLSGD--PVFAEKVMKIRTVLNKLDK-- 210 (478)
T ss_dssp -------------------------------GGGCEEHHHHTTCHHHHHHHHHHHCC--THHHHHHHHHHHHHHHSCC--
T ss_pred -------------------------------CCCCcccccccchhhhHHHHHHHHCC--hHHHHHHHHHHHHHHhcCC--
Confidence 0011111111111 112222221 2233344555555554332
Q ss_pred CCCCC-----cch------hhhcHHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 003187 527 PRPHL-----DDK------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD 592 (840)
Q Consensus 527 ~~P~~-----DdK------iltsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d 592 (840)
.|.+ |.. -..+|.|..-+ =|.+.+..++. ..+.|+++-.++++-+++|+..
T Consensus 211 -~~GL~p~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~il~g~--------------~d~~~~~m~~~a~~~i~~~l~~ 275 (478)
T 1nxc_A 211 -PEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDK--------------TDLEAKKMYFDAVQAIETHLIR 275 (478)
T ss_dssp -GGGCCCSEECTTTCCBCSCEECSSTTTHHHHHHHHHHHHHTTT--------------CCHHHHHHHHHHHHHHHHHTEE
T ss_pred -CCCccccccCCCCCCccCceeeecCCCchHHHHHHHHHHHcCC--------------chHHHHHHHHHHHHHHHHHhcc
Confidence 1211 100 02245554433 45566666653 1268999999999999999864
Q ss_pred cCCCeE-E-EeecCCCCCCCCCcchHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHcccccCCc----cccCC
Q 003187 593 EQTHRL-Q-HSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS----GTKWLVWAIELQNTQDELFLDREGGG----YFNTT 662 (840)
Q Consensus 593 ~~~G~l-~-~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTg----d~~yL~~A~~L~~~~~~~F~D~~~Gg----yf~t~ 662 (840)
...+++ + ..+..|.. ....+--+.++-|++.|..... .++|++.|++|.+.+...+....+|- |....
T Consensus 276 ~~~~~~~~v~~~~~~~~--~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~l~~a~~l~~tC~~~y~~~~tgl~PE~~~~~~ 353 (478)
T 1nxc_A 276 KSSGGLTYIAEWKGGLL--EHKMGHLTCFAGGMFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEAFRFDG 353 (478)
T ss_dssp ECTTSCEEECEEETTEE--ECEEETGGGGHHHHHHHTSTTSCTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCCSEEESST
T ss_pred cCCCCcEEEEeccCCcc--cccccchhhhhHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEecc
Confidence 322222 2 22333321 1112223445667777754333 26899999999999987665543441 22211
Q ss_pred CCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHH
Q 003187 663 GEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVP 729 (840)
Q Consensus 663 ~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~ 729 (840)
. .+...++.. |...| ---..++.+.-|+++||+ +.|++.+.++++++.... +.+.+++
T Consensus 354 ~-~~~~~~~~~---~~~y~-LRPE~iES~fylyR~TgD---~~yre~gw~~f~ai~k~~-r~~~G~a 411 (478)
T 1nxc_A 354 G-VEAIATRQN---EKYYI-LRPEVIETYMYMWRLTHD---PKYRTWAWEAVEALESHC-RVNGGYS 411 (478)
T ss_dssp T-CSSBCCSGG---GCCBC-SCCHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHT-EETTEEC
T ss_pred C-ccccccccc---ccccC-CChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh-hcccccc
Confidence 1 111111110 00000 001578899999999996 899999999999986533 4454443
No 283
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=95.27 E-value=0.033 Score=47.92 Aligned_cols=60 Identities=10% Similarity=0.172 Sum_probs=35.7
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhc-CCCCCCcEEEECCCCceecc
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~-g~~G~P~~vfl~p~g~~~~~ 219 (840)
++.|+++||++|+.+.. .+ +.++-.|.. +|++ ++....+ ...+ |..++|+.++ +|+.+.+
T Consensus 8 v~~y~~~~C~~C~~~~~-~L------~~~~i~~~~--vdv~--~~~~~~l----~~~~~~~~~vP~l~~---~g~~i~g 68 (89)
T 2klx_A 8 IILYTRPNCPYCKRARD-LL------DKKGVKYTD--IDAS--TSLRQEM----VQRANGRNTFPQIFI---GDYHVGG 68 (89)
T ss_dssp EEEESCSCCTTTHHHHH-HH------HHHTCCEEE--ECSC--HHHHHHH----HHHHHSSCCSCEEEE---TTEECCS
T ss_pred EEEEECCCChhHHHHHH-HH------HHcCCCcEE--EECC--HHHHHHH----HHHhCCCCCcCEEEE---CCEEEeC
Confidence 55689999999998753 22 223335554 4554 3322222 2234 8899999754 6776543
No 284
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.038 Score=51.94 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+.++++.+.++ | +-|+.+||++|+...+ .|++. .-++-.|..|.||.++.++. ..++++..+|...+|..
T Consensus 4 ~~~~~~ii~~~~-V-vvysk~~Cp~C~~ak~-lL~~~---~~~~v~~~~idid~~~d~~~---~~~~l~~~~G~~tVP~I 74 (127)
T 3l4n_A 4 QKEYSLILDLSP-I-IIFSKSTCSYSKGMKE-LLENE---YQFIPNYYIIELDKHGHGEE---LQEYIKLVTGRGTVPNL 74 (127)
T ss_dssp HHHHHHHHTSCS-E-EEEECTTCHHHHHHHH-HHHHH---EEEESCCEEEEGGGSTTHHH---HHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHHccCC-E-EEEEcCCCccHHHHHH-HHHHh---cccCCCcEEEEecCCCCHHH---HHHHHHHHcCCCCcceE
Confidence 456777777666 3 3477899999998753 22110 00123577777777644322 22334445688889988
Q ss_pred EEECCCCceec
Q 003187 208 VFLSPDLKPLM 218 (840)
Q Consensus 208 vfl~p~g~~~~ 218 (840)
+| +|+.|.
T Consensus 75 fI---~G~~IG 82 (127)
T 3l4n_A 75 LV---NGVSRG 82 (127)
T ss_dssp EE---TTEECC
T ss_pred EE---CCEEEc
Confidence 55 455553
No 285
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=95.24 E-value=5.6 Score=45.34 Aligned_cols=119 Identities=8% Similarity=0.012 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCe---EEEeecCCCCCC--------CCC---cchH---HHHHHHHHHHHHHcCCHHH
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHR---LQHSFRNGPSKA--------PGF---LDDY---AFLISGLLDLYEFGSGTKW 635 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~---l~~~~~~g~~~~--------~~~---leDy---A~~i~aLl~LYeaTgd~~y 635 (840)
+++++.|+++.+-..........|. .++ +..+.... .++ ...| -.+|+.+.-||++|||+.|
T Consensus 313 ~~~~~~a~~l~~tC~~~y~~~~tGl~PE~~~-~~~~~~~~~~~~~~~~~g~~~~~~~y~LRPE~iES~fylyR~TgD~~y 391 (475)
T 2ri9_A 313 QDFIDFGLELVDGCEATYNSTLTKIGPDSWG-WDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIY 391 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSCCCSEEE-CCTTCCCGGGHHHHHHHSCEEEECCBCSCCHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcEEE-eecCcccccccccccCCCceecccccCCChHHHHHHHHHHHHhCCHHH
Confidence 7899999999887655433222342 222 11111100 010 0112 1689999999999999999
Q ss_pred HHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003187 636 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 700 (840)
Q Consensus 636 L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~ 700 (840)
++++.++++.++++..-+ .||-...+ +........++..+| ..+++-|--||-+..+
T Consensus 392 r~~gw~~f~ai~k~~rt~--~G~a~i~d----V~~~~~~~~~D~meS--F~laETLKYlYLLFsd 448 (475)
T 2ri9_A 392 RDWVWNAFVAINSTCRTD--SGFAAVSD----VNKANGGSKYDNQES--FLFAEVMKYSYLAHSE 448 (475)
T ss_dssp HHHHHHHHHHHHHHTBCS--SSBCCBSC----TTSGGGSSBBSCCCT--HHHHTHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHccc--cCCccccc----ccCCCCCCcCCccch--HHHHHHHHHHHhcccC
Confidence 999999999999988643 34433221 100000222344555 3677778788888765
No 286
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=95.24 E-value=0.041 Score=49.72 Aligned_cols=71 Identities=8% Similarity=0.090 Sum_probs=39.8
Q ss_pred HHHHHhcCCCEEEEEec----cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003187 131 FAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (840)
Q Consensus 131 l~~Ak~e~KpI~l~~g~----~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~ 206 (840)
++.+.+.+| |.|+..+ +||++|+.+.+ .| +.++-.|. .+|+++.|++...+ ...+|..++|.
T Consensus 8 ~~~~i~~~~-vvvy~~g~~~~~~Cp~C~~ak~-~L------~~~~i~~~--~vdi~~~~~~~~~l----~~~~g~~~vP~ 73 (109)
T 1wik_A 8 LKVLTNKAS-VMLFMKGNKQEAKCGFSKQILE-IL------NSTGVEYE--TFDILEDEEVRQGL----KTFSNWPTYPQ 73 (109)
T ss_dssp HHHHHTTSS-EEEEESSTTTCCCSSTHHHHHH-HH------HHTCSCEE--EEESSSCHHHHHHH----HHHHSCCSSCE
T ss_pred HHHHhccCC-EEEEEecCCCCCCCchHHHHHH-HH------HHcCCCeE--EEECCCCHHHHHHH----HHHhCCCCCCE
Confidence 444555555 5554433 99999998753 22 22222444 45666556544333 33458888997
Q ss_pred EEEECCCCceec
Q 003187 207 SVFLSPDLKPLM 218 (840)
Q Consensus 207 ~vfl~p~g~~~~ 218 (840)
. |+ +|+.+.
T Consensus 74 i-fi--~g~~ig 82 (109)
T 1wik_A 74 L-YV--RGDLVG 82 (109)
T ss_dssp E-EC--SSSEEE
T ss_pred E-EE--CCEEEc
Confidence 4 44 456553
No 287
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=95.18 E-value=0.5 Score=54.33 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 003187 618 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 653 (840)
Q Consensus 618 ~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~ 653 (840)
.+|+.+.-||++|||+.|++++.++++.++++..-+
T Consensus 393 E~iES~fylyR~TgD~~yre~gw~if~ai~k~~r~~ 428 (503)
T 1hcu_A 393 ETLESLYYAYRVTGDSKWQDLAWEALSAIEDACRAG 428 (503)
T ss_dssp HHHHHHHHHHHHHCBHHHHHHHHHHHHHHHHHHEET
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999999999999988643
No 288
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=95.17 E-value=0.04 Score=47.53 Aligned_cols=67 Identities=27% Similarity=0.300 Sum_probs=40.5
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
++.|+++||++|+.+.. +.+.++-.|..+.||..+..+ +......+...+|..+.|+.++ +|+.+.+
T Consensus 14 v~ly~~~~Cp~C~~~~~-------~L~~~gi~~~~~~v~~~~~~~-~~~~~~~l~~~~g~~~vP~l~~---~g~~i~G 80 (92)
T 3ic4_A 14 VLMYGLSTCPHCKRTLE-------FLKREGVDFEVIWIDKLEGEE-RKKVIEKVHSISGSYSVPVVVK---GDKHVLG 80 (92)
T ss_dssp SEEEECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCCHHH-HHHHHHHHHHHHSSSCSCEEEE---TTEEEES
T ss_pred EEEEECCCChHHHHHHH-------HHHHcCCCcEEEEeeeCCccc-hHHHHHHHHHhcCCCCcCEEEE---CCEEEeC
Confidence 34488999999999753 233345578777777532111 1111222233458889999887 6776543
No 289
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=95.15 E-value=0.017 Score=58.08 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=51.6
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHH-----------------HHHHH
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTYVQ 196 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~pd~~~~y-----------------~~~~~ 196 (840)
.||+|+|.|+ +.||..|...- +++.++.+ +++..|-|..+. ++..+.| .+..+
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~e~------~~l~~l~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 149 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAASV------RKFNQLAGELENTVVLCISSDL-PFAQSRFCGAEGLSNVITLSTLRGADFKQ 149 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCHHH------HHHHHHHHTSTTEEEEEEESSC-HHHHTTCTTTTTCTTEEEEETTSCTHHHH
T ss_pred CCCcEEEEEECCCCCchhHHHH------HHHHHHHHHhCCCEEEEEECCC-HHHHHHHHHHcCCCCceEEecCchHHHHH
Confidence 5899999998 67999998643 33333333 344444443331 1110001 01111
Q ss_pred HhcCC-------CC--CCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHH
Q 003187 197 ALYGG-------GG--WPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKV 241 (840)
Q Consensus 197 ~~~g~-------~G--~P~~vfl~p~g~~~~~~-tY~p~~~~~~~~~f~~~L~~i 241 (840)
. +|+ .| .|+++++|++|++++.. ++-. ...+++.++|+.+
T Consensus 150 ~-ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~----~~~~~~~~~l~~L 199 (200)
T 3zrd_A 150 A-YGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEI----TTEPNYDAALAAL 199 (200)
T ss_dssp H-TTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBT----TSCCCHHHHHHHH
T ss_pred H-hCceeecccCCCccccEEEEECCCCeEEEEEecCCc----ccCCCHHHHHHhh
Confidence 1 133 23 59999999999998763 1211 1235677777655
No 290
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=95.01 E-value=0.051 Score=58.98 Aligned_cols=132 Identities=7% Similarity=-0.068 Sum_probs=69.5
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH---------------HHHHhcC
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT---------------YVQALYG 200 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~---------------~~~~~~g 200 (840)
.||+|+|.|+ .+||+.|..- -..|+ +.-.+++..|=|..+ .++-.+.|.+ ..++ +|
T Consensus 23 ~Gk~vvl~F~p~~~tp~C~~e-~~~~~-----~~~~~~~~v~gis~D-~~~~~~~f~~~~~l~fp~l~D~~~~v~~~-yg 94 (322)
T 4eo3_A 23 YGKYTILFFFPKAGTSGSTRE-AVEFS-----RENFEKAQVVGISRD-SVEALKRFKEKNDLKVTLLSDPEGILHEF-FN 94 (322)
T ss_dssp TTSEEEEEECSSTTSHHHHHH-HHHHH-----HSCCTTEEEEEEESC-CHHHHHHHHHHHTCCSEEEECTTCHHHHH-TT
T ss_pred CCCeEEEEEECCCCCCCCHHH-HHHHH-----HHhhCCCEEEEEeCC-CHHHHHHHHHhhCCceEEEEcCchHHHHh-cC
Confidence 5899999998 6899999752 11221 111123444444433 2222222211 1111 25
Q ss_pred C----CCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 003187 201 G----GGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKL 276 (840)
Q Consensus 201 ~----~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~ 276 (840)
+ ...|+++++|++|++.+.-.-+.+. ...-++|+.+.+. .+.-..+.+.|+...+.. .=.
T Consensus 95 v~~~~~~~r~tfiId~~G~i~~~~~~v~~~-----~h~~~~l~~~~~~--------~~~~~~~~~~I~~RRSiR---~F~ 158 (322)
T 4eo3_A 95 VLENGKTVRSTFLIDRWGFVRKEWRRVKVE-----GHVQEVKEALDRL--------IEEDLSLNKHIEWRRARR---ALK 158 (322)
T ss_dssp CEETTEECCEEEEECTTSBEEEEEESCCST-----THHHHHHHHHHHH--------HHHHTSCCHHHHHCCCCC---CBC
T ss_pred CCCCCcCccEEEEECCCCEEEEEEeCCCcc-----ccHHHHHHHHhhh--------chhhhHHHHHHHhhhccC---CcC
Confidence 4 2368999999999987542112222 1566777777644 222234556666544332 111
Q ss_pred CCCCCHHHHHHHHHHH
Q 003187 277 PDELPQNALRLCAEQL 292 (840)
Q Consensus 277 ~~~~~~~~~~~~~~~l 292 (840)
+..++++.++++++.-
T Consensus 159 ~~~V~~e~l~~ileaA 174 (322)
T 4eo3_A 159 KDRVPREELELLIKAA 174 (322)
T ss_dssp CCCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHH
Confidence 2345678888877654
No 291
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=94.94 E-value=0.046 Score=47.17 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=36.3
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~ 219 (840)
++.|+++||++|+.+.. .+ +..+-.|..+ |+++.++....+ ...++..++|+. |. +|+.+.+
T Consensus 8 v~ly~~~~C~~C~~~~~-~L------~~~~i~~~~~--di~~~~~~~~~l----~~~~~~~~vP~l-~~--~g~~i~g 69 (92)
T 2khp_A 8 VIIYTRPGCPYCARAKA-LL------ARKGAEFNEI--DASATPELRAEM----QERSGRNTFPQI-FI--GSVHVGG 69 (92)
T ss_dssp EEEEECTTCHHHHHHHH-HH------HHTTCCCEEE--ESTTSHHHHHHH----HHHHTSSCCCEE-EE--TTEEEES
T ss_pred EEEEECCCChhHHHHHH-HH------HHcCCCcEEE--ECCCCHHHHHHH----HHHhCCCCcCEE-EE--CCEEEcC
Confidence 45689999999998754 22 1223345554 444445443333 223488899964 44 5666543
No 292
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=94.80 E-value=1.5 Score=50.55 Aligned_cols=284 Identities=13% Similarity=0.132 Sum_probs=155.0
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHcc------CChHHHHHHHHHHHHHHHhcc-CCCCceEeeccCCcccccccccccc
Q 003187 370 WHVPHFEKMLYDQGQLANVYLDAFSLT------KDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADSAETEGATRKKE 442 (840)
Q Consensus 370 W~vPHFEKMLYDNA~Ll~~ya~Ay~~t------gd~~y~~~A~~t~~fl~r~m~-~~~Ggfysa~DADs~~~~~~~~~~E 442 (840)
-.|+-||-.+ ++|-.++-||.++ +++.+++.|.+..+-|+--+- .|.|-=|...+-..... +.+
T Consensus 93 ~~VsvFETtI----R~LGGLLSAy~Ls~~~~~~~d~~lL~kA~dLadrLlpAFd~TptgiP~~~vnl~~g~~-----~~~ 163 (511)
T 1dl2_A 93 AEVNVFETTI----RMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQA-----VKN 163 (511)
T ss_dssp SEEEHHHHHH----HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHGGGGSSSSSCCCSEEETTTCCE-----ECC
T ss_pred ceechhheeh----hhhhhhhhHHHhcccccCCCcHHHHHHHHHHHHHHHHhhcCCCCCCCCceeecccCCC-----CCC
Confidence 3566688655 5888888888898 999999999999999998887 67765444433211000 000
Q ss_pred cchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCc----hHHHHhcCCCHHHHHHHHHHHHHH
Q 003187 443 GAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS----SASASKLGMPLEKYLNILGECRRK 518 (840)
Q Consensus 443 GayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~----~~~a~~~g~~~e~l~~~l~~~r~k 518 (840)
.+ -.|.+.+.-..++ ..++...| ..+..+..+.+.+.
T Consensus 164 --------------------------~~-----------~~~~s~~Ae~gSl~LEF~~LS~LTG--d~~Y~~~a~r~~~~ 204 (511)
T 1dl2_A 164 --------------------------HA-----------DGGASSTAEFTTLQMEFKYLAYLTG--NRTYWELVERVYEP 204 (511)
T ss_dssp --------------------------SS-----------GGGCEEHHHHSSCHHHHHHHHHHHT--CHHHHHHHHTTHHH
T ss_pred --------------------------CC-----------CCcccccccccceeeeHHHHHHHHC--ChHHHHHHHHHHHH
Confidence 00 0011111111111 01222222 13344455566666
Q ss_pred HHhhhcC--CC------------CCCCcchhhhcHHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHH
Q 003187 519 LFDVRSK--RP------------RPHLDDKVIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAES 581 (840)
Q Consensus 519 L~~~R~~--R~------------~P~~DdKiltsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~ 581 (840)
|.+.|.. +. --+.+. ..+|.|..-+ =|.+.+..+++ +.|+++=.+
T Consensus 205 l~~~~~~~~~~~GL~p~~i~~~tg~~~~~--~~~lGa~~DS~YEYLlK~~il~~d----------------~~y~~m~~~ 266 (511)
T 1dl2_A 205 LYKNNDLLNTYDGLVPIYTFPDTGKFGAS--TIRFGSRGDSFYEYLLKQYLLTHE----------------TLYYDLYRK 266 (511)
T ss_dssp HHHHHTHHHHHTTCCBSEECTTTCCBCSC--CBCSSTTTHHHHHHHHHHHHHHCC----------------HHHHHHHHH
T ss_pred HHhcccccCCCCCCcceEEcCCCCCccCC--eeeecCCCCcHHHHHHHHHHhcCC----------------HHHHHHHHH
Confidence 6665411 00 011111 2344444433 45666666655 789999999
Q ss_pred HHHHHHHhccccC--CCeEEEe-ecCCCC-CCCCCcchHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHH
Q 003187 582 AASFIRRHLYDEQ--THRLQHS-FRNGPS-KAPGFLDDYAFLISGLLDLYEFGS------------GTKWLVWAIELQNT 645 (840)
Q Consensus 582 ~~~fl~~~l~d~~--~G~l~~~-~~~g~~-~~~~~leDyA~~i~aLl~LYeaTg------------d~~yL~~A~~L~~~ 645 (840)
+++-+++|+.... .+.++-. ...|.. ......+--+.++-|++.|....+ ++++++.|++|.+.
T Consensus 267 a~~~i~~~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~hL~cF~gG~~aLg~~~~~~~~~a~~~~~~~~~~~~~a~~l~~t 346 (511)
T 1dl2_A 267 SMEGMKKHLLAQSKPSSLWYIGEREQGLHGQLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGITDT 346 (511)
T ss_dssp HHHHHHHHTEEECTTTCCEEECBBTTCTTSCCBCEEEGGGGGHHHHHHHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCcEEEEEeecCCCCccccccchhhhchhHHHHhccccCCChhhhhhcccccHHHHHHHHHHHHH
Confidence 9999999987431 2323322 221111 111223333555778887775322 34799999999999
Q ss_pred HHHHcccccCCc----cccCCCCC----------CccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003187 646 QDELFLDREGGG----YFNTTGED----------PSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAE 711 (840)
Q Consensus 646 ~~~~F~D~~~Gg----yf~t~~~~----------~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~ 711 (840)
+..-+....+|- |....... .+..++. .|...| ---..++.+.-|+++||+ +.|++.+.
T Consensus 347 C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~d~~~~~---~d~~y~-LRPE~iES~fylyR~TgD---~~yre~gw 419 (511)
T 1dl2_A 347 CYQMYKQSSSGLAPEIVVFNDGNIKQDGWWRSSVGDFFVKP---LDRHNL-QRPETVESIMFMYHLSHD---HKYREWGA 419 (511)
T ss_dssp HHHHHHTSTTSCCCSEEEECCSCCC-CCCEECSSSSEEECG---GGCCBC-CCCHHHHHHHHHHHHHCC---THHHHHHH
T ss_pred HHHHHhcCccCCCceEEEeecCCccccccccccccceeecc---CCcccC-cCHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 887765444442 22221110 0000000 010000 001588899999999996 89999999
Q ss_pred HHHHHHHHHHHhhhhh
Q 003187 712 HSLAVFETRLKDMAMA 727 (840)
Q Consensus 712 ~~l~~~~~~i~~~p~~ 727 (840)
++++++.... +.+.+
T Consensus 420 ~~f~ai~k~~-rt~~G 434 (511)
T 1dl2_A 420 EIATSFFENT-CVDCN 434 (511)
T ss_dssp HHHHHHHHHH-EESTT
T ss_pred HHHHHHHHHh-ccccC
Confidence 9999986654 34444
No 293
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=94.61 E-value=0.6 Score=52.80 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=68.5
Q ss_pred CCCCCCCC---CCCCChhHH---HHHHHhhhh---hcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEec---
Q 003187 299 RFGGFGSA---PKFPRPVEI---QMMLYHSKK---LEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV--- 366 (840)
Q Consensus 299 ~~GGfg~a---PKFP~~~~l---~~Ll~~~~~---~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsv--- 366 (840)
..|||..| -||-.|+.. .+++-+... ..+. ..-+.+++.+..-++-|.+- +.-.|+|| +.|
T Consensus 50 l~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~---g~~~d~ldeikwg~D~llk~---~~~~~~~y-~qVgd~ 122 (441)
T 1ia6_A 50 LTGGYHDAGDHVKFGLPQGYSAAILGWSLYEFKESFDAT---GNTTKMLQQLKYFTDYFLKS---HPNSTTFY-YQVGEG 122 (441)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHHT---TCHHHHHHHHHHHHHHHHHT---CCSTTCEE-EEESCH
T ss_pred CCCCeeeCCCCCeeccchHHHHHHHHHHHHHhHHHHhhc---CcHHHHHHHHHHHHHHHHHh---ccCCCcEE-EEeCCC
Confidence 57999554 677766543 233333221 1111 12478999999999998882 22345555 244
Q ss_pred --C-CCCCCCCCcch---H-H---------H-HHHHHHHHHHHHHccC--Ch----HHHHHHHHHHHHHHHh
Q 003187 367 --D-ERWHVPHFEKM---L-Y---------D-QGQLANVYLDAFSLTK--DV----FYSYICRDILDYLRRD 415 (840)
Q Consensus 367 --D-~~W~vPHFEKM---L-Y---------D-NA~Ll~~ya~Ay~~tg--d~----~y~~~A~~t~~fl~r~ 415 (840)
| .-|..|.-.++ . | | -+..+.+++.|+++.+ |+ .+++.|++..+|..+.
T Consensus 123 ~~Dh~~w~~Pe~~~~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vfk~~D~~yA~~~L~~A~~~~~fa~~~ 194 (441)
T 1ia6_A 123 NADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELYAMGKAN 194 (441)
T ss_dssp HHHTTCCSCGGGCCSCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccccccCChhhCCCCCceeeEeCCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc
Confidence 2 24566643222 1 2 3 5789999999999987 44 4577889999998874
No 294
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=94.34 E-value=0.14 Score=52.45 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=16.8
Q ss_pred cCCCEEEEEe-ccCChhhh
Q 003187 137 RDVPIFLSIG-YSTCHWCH 154 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~ 154 (840)
.||+|+|.|+ ++||+.|.
T Consensus 32 ~gk~vvl~f~~a~~cp~C~ 50 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCS 50 (241)
T ss_dssp TTSEEEEEEESCSSCHHHH
T ss_pred CCCeEEEEEeCCCCCCCCC
Confidence 5899999998 99999999
No 295
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=94.31 E-value=0.7 Score=53.16 Aligned_cols=187 Identities=10% Similarity=0.006 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCcch-hhhcHHHHHHHHHHHHHHHh------hhhhhhhcccCCCCCCChHHHHHHH
Q 003187 507 KYLNILGECRRKLFDVRSKRPRPHLDDK-VIVSWNGLVISSFARASKIL------KSEAESAMFNFPVVGSDRKEYMEVA 579 (840)
Q Consensus 507 ~l~~~l~~~r~kL~~~R~~R~~P~~DdK-iltsWNal~I~ALa~A~~~~------~d~~~~~~~~~~~~~~~~~~yle~A 579 (840)
.+.+..+++++.+.+.-.-. .|.. -+-.-|..++-+|.-||.+. ++ +.+|+.|
T Consensus 71 gl~~Ef~~A~~~V~~~l~F~----~d~~VsvFETtIR~LGGLLSAy~Ls~~~~~~~d----------------~~lL~kA 130 (511)
T 1dl2_A 71 EFEAEIQRSEHWINDVLDFD----IDAEVNVFETTIRMLGGLLSAYHLSDVLEVGNK----------------TVYLNKA 130 (511)
T ss_dssp HHHHHHHHHHHHHHHTCCCC----CSSEEEHHHHHHHHHHHHHHHHHHHHHHTCSCH----------------HHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCC----CCceechhheehhhhhhhhhHHHhcccccCCCc----------------HHHHHHH
Confidence 45555666666555421111 1221 12334788999999999998 55 7899999
Q ss_pred HHHHHHHHHhccccCCCeEEEe--ecCCCCCCCC------CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003187 580 ESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPG------FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 651 (840)
Q Consensus 580 ~~~~~fl~~~l~d~~~G~l~~~--~~~g~~~~~~------~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~ 651 (840)
+++++.|.-.|-...+|-=+.. .+.|.+..+. .+-.-+-++.=+..|.++|||++|.+.|+++.+.+.+.--
T Consensus 131 ~dLadrLlpAFd~TptgiP~~~vnl~~g~~~~~~~~~~~s~~Ae~gSl~LEF~~LS~LTGd~~Y~~~a~r~~~~l~~~~~ 210 (511)
T 1dl2_A 131 IDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNND 210 (511)
T ss_dssp HHHHHHHHGGGGSSSSSCCCSEEETTTCCEECCSSGGGCEEHHHHSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCCCCCCceeecccCCCCCCCCCCcccccccccceeeeHHHHHHHHCChHHHHHHHHHHHHHHhccc
Confidence 9999999988861335532111 2344321111 1223333456678899999999999999999988876420
Q ss_pred --cccCCc---cccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 003187 652 --DREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 723 (840)
Q Consensus 652 --D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 723 (840)
.+..|- +.+... +... ..+...=++.-..-+-|++.+.++++ +.|++.-++.++.+...+.+
T Consensus 211 ~~~~~~GL~p~~i~~~t--g~~~-----~~~~~lGa~~DS~YEYLlK~~il~~d---~~y~~m~~~a~~~i~~~L~~ 277 (511)
T 1dl2_A 211 LLNTYDGLVPIYTFPDT--GKFG-----ASTIRFGSRGDSFYEYLLKQYLLTHE---TLYYDLYRKSMEGMKKHLLA 277 (511)
T ss_dssp HHHHHTTCCBSEECTTT--CCBC-----SCCBCSSTTTHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHTEE
T ss_pred ccCCCCCCcceEEcCCC--CCcc-----CCeeeecCCCCcHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcc
Confidence 011221 121111 0000 00111112223567789999988853 78988888888887766653
No 296
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=93.93 E-value=0.15 Score=48.82 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=23.2
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcc
Q 003187 133 EARKRDVPIFLSIGYSTCHWCHVMEVES 160 (840)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~et 160 (840)
..+..+|.+++.|+-.+|++|+.+..+.
T Consensus 9 ~~~~~a~~~vv~f~D~~Cp~C~~~~~~l 36 (147)
T 3gv1_A 9 EVRGNGKLKVAVFSDPDCPFCKRLEHEF 36 (147)
T ss_dssp EEETTCCEEEEEEECTTCHHHHHHHHHH
T ss_pred eecCCCCEEEEEEECCCChhHHHHHHHH
Confidence 3446678899999999999999998753
No 297
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=93.90 E-value=1.9 Score=48.05 Aligned_cols=138 Identities=13% Similarity=0.041 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHH
Q 003187 507 KYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFI 586 (840)
Q Consensus 507 ~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl 586 (840)
.+.++++...+++.+.-+. ....|.-+.+.+-|. +..|+.+++++++ ++|++.|.++.+.+
T Consensus 47 ~~~~~~~~ll~~~~~~~~~--~~~~~~~lY~G~~Gi-a~~l~~l~~~t~d----------------~~yl~~a~~~l~~~ 107 (411)
T 3e6u_A 47 RLTNKIRELLQQMERGLKS--ADPRDGTGYTGWAGI-AVLYLHLYDVFGD----------------PAYLQLAHGYVKQS 107 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SCTTCCCSSSSHHHH-HHHHHHHHHHHCC----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccc--CCCCCCCeeeChHHH-HHHHHHHHHhcCC----------------HHHHHHHHHHHHHH
Confidence 4555566666655442222 356688888998886 5678889999987 78999999999998
Q ss_pred HHhccccCCCeEEEeecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCC
Q 003187 587 RRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDP 666 (840)
Q Consensus 587 ~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~ 666 (840)
.+.+-+. ..++...-+=.+..++.+|+.+++++ .+.++.+.+.+.....+ +
T Consensus 108 ~~~l~~~---------------~~~~~~G~aG~l~~l~~ly~~~g~~~---~a~~~~~~l~~~~~~~~---------~-- 158 (411)
T 3e6u_A 108 LNCLTKR---------------SITFLCGDAGPLAVAAVLYHKMNNEK---QAEDCITRLIHLNKIDP---------H-- 158 (411)
T ss_dssp HTTCCSC---------------CCCTTTSTHHHHHHHHHHHHHTTCHH---HHHHHHHHHHGGGGGCT---------T--
T ss_pred HHHhccc---------------CCccccCcHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHhcccc---------c--
Confidence 8765320 12455666778888999999999986 34555554443321000 0
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 003187 667 SVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 701 (840)
Q Consensus 667 ~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~ 701 (840)
......+|.+=.+..|+.|++.++++
T Consensus 159 ---------~~~dll~G~AG~l~aLl~L~~~~~~~ 184 (411)
T 3e6u_A 159 ---------APNEMLYGRIGYIYALLFVNKNFGVE 184 (411)
T ss_dssp ---------CCSSTTTSHHHHHHHHHHHHHHHSSC
T ss_pred ---------CChhhhcCcHHHHHHHHHHHHHcCCc
Confidence 01123468888888899999999863
No 298
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=93.90 E-value=0.086 Score=60.23 Aligned_cols=103 Identities=11% Similarity=0.055 Sum_probs=64.1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccc-cCCCCCCccccccccCCCCCCCChHHHHHHHH
Q 003187 613 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF-NTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 691 (840)
Q Consensus 613 leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf-~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~L 691 (840)
-|-..=++-|||.+|.+++|+.+|++|++|.+.+..-| |..+|--+ ...................++.+.-+.+...+
T Consensus 104 FETtIR~LGGLLSAy~Lsgd~~lL~kA~dLad~LlpAF-dTptgiP~~~vnl~~g~~~~~~~~~~~~s~lAe~gsl~LEF 182 (478)
T 1nxc_A 104 FEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAF-HTPSGIPWALLNMKSGIGRNWPWASGGSSILAEFGTLHLEF 182 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGG-CSSSSCCCSEEETTTCCEECCTTSGGGCEEHHHHTTCHHHH
T ss_pred hheehhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccccCCCCcccCCCCcccccccchhhhH
Confidence 45556678899999999999999999999999998877 54455211 11100000000000000001112222334457
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003187 692 VRLASIVAGSKSDYYRQNAEHSLAVFET 719 (840)
Q Consensus 692 lrL~~lt~~~~~~~y~~~A~~~l~~~~~ 719 (840)
.+|+++||+ +.|.+.++++.+.+..
T Consensus 183 ~~LS~lTGd---~~Y~~~a~~~~~~l~~ 207 (478)
T 1nxc_A 183 MHLSHLSGD---PVFAEKVMKIRTVLNK 207 (478)
T ss_dssp HHHHHHHCC---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC---hHHHHHHHHHHHHHHh
Confidence 899999996 7899999988777653
No 299
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=93.85 E-value=0.14 Score=52.82 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
..|+++++||+|++.....|-... | .++-++|+.|.
T Consensus 126 ~~p~~fiID~~G~I~~~~~~~~~~---g-r~~~eilr~l~ 161 (233)
T 2v2g_A 126 TCRAVFIIGPDKKLKLSILYPATT---G-RNFSEILRVID 161 (233)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTB---C-CCHHHHHHHHH
T ss_pred ccceEEEECCCCEEEEEEecCCCC---C-CCHHHHHHHHH
Confidence 469999999999988764431111 1 14666666665
No 300
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=93.73 E-value=0.031 Score=56.32 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=36.5
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER 184 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~ 184 (840)
+|+++|.|++.||++|+.|+...=-.+++++.+..+.+.+++|++..
T Consensus 113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~ 159 (197)
T 1un2_A 113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM 159 (197)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence 68999999999999999998632133566666666778888888764
No 301
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=93.68 E-value=0.14 Score=57.17 Aligned_cols=91 Identities=20% Similarity=0.179 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC-C-CCCCcchHHHHH
Q 003187 543 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-K-APGFLDDYAFLI 620 (840)
Q Consensus 543 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~-~-~~~~leDyA~~i 620 (840)
.+.++++|+++.+| ++..+.+..++.-+---=+++. .|.. . ......+-.+++
T Consensus 378 yll~~vra~~~s~D----------------~~Lw~~~~~ma~~~~lgdi~~~---------~~~~~~~~~~~~~~sp~lL 432 (543)
T 2v8i_A 378 FLISYARAYAIDND----------------PLLWKVARGIANDQGLGDIGTA---------PGKEVKVNMDTTNSDPYAL 432 (543)
T ss_dssp HHHHHHHHHHHSCC----------------HHHHHHHHHHHHHTTCEECTTB---------TTBSCEECTTCCCCCHHHH
T ss_pred hhHHHHHHHHcCCC----------------HHHHHHHHHHHhhCCccccCCC---------cCcccccccCCCCcCHHHH
Confidence 57899999999987 6777777776633211111111 1111 1 122334557889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccccC
Q 003187 621 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 661 (840)
Q Consensus 621 ~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 661 (840)
.|+|+||++|+++.|++.|.++.+.+.++-++ .|||-.
T Consensus 433 ~allEL~~atq~~~~l~lA~~~g~nl~~~~~~---~G~Fv~ 470 (543)
T 2v8i_A 433 FALLDLYHASQVADYRKLAEKIGDNIIKIRYI---DGFFMA 470 (543)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEE---TTEECS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhc---CceecC
Confidence 99999999999999999999999988865443 245543
No 302
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=93.52 E-value=0.48 Score=54.47 Aligned_cols=174 Identities=10% Similarity=-0.018 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE--eecCCCCCCC---CCc
Q 003187 539 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH--SFRNGPSKAP---GFL 613 (840)
Q Consensus 539 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~--~~~~g~~~~~---~~l 613 (840)
-|..++-+|.-||...++......-+ +...+.+|+.|+++++.|.-.|-.+ +|-=+. ..+.|.+... ..+
T Consensus 101 TtIR~LGGLLSAy~Ls~~~~~~~~~~----~~~~~~lL~kA~dLadrLlpAFdTp-tgiP~~~vnl~~~~~~~~~~~~~~ 175 (503)
T 1hcu_A 101 TNIRYLGGLLSAYDLLRGPFSSLATN----QTLVNSLLRQAQTLANGLKVAFTTP-SGVPDPTVFFNPTVRRSGASSNNV 175 (503)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGGGCCC----HHHHHHHHHHHHHHHHHHGGGGCSS-SSCCCSEEECSSSCEECCCSEEEH
T ss_pred eehhhHhHHHHHHHHccCcccccccc----ccchHHHHHHHHHHHHHHHHhhcCC-CCCCcceeecccCCCCCCCCcccc
Confidence 47889999999999998710000000 0001479999999999999888543 452111 1223322111 123
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--cccCCc---cccCCCCCCccccccccCCCCCCCChHHHHH
Q 003187 614 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL--DREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 688 (840)
Q Consensus 614 eDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~--D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a 688 (840)
-.-+-++.=+..|.++|||++|.+.|+++.+.+.+.-. .+..|- +.+... +.... .+...=++.-..-
T Consensus 176 Ae~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~t--g~~~~-----~~~~~Ga~~DS~Y 248 (503)
T 1hcu_A 176 AEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSN--GTFQD-----SSGSWSGLMDSFY 248 (503)
T ss_dssp HHHTTSHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTT--CCBCC-----CEECSSTTTHHHH
T ss_pred ccccceeeehHHHHHHhCChHHHHHHHHHHHHHHhhhcccCCCCCceeeEEeCCC--CcccC-----CeeeecCCCccHH
Confidence 33344566688899999999999999999988875321 011121 111111 00000 0011112223577
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 003187 689 INLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMA 725 (840)
Q Consensus 689 ~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p 725 (840)
+-|++.+.++|+. ++.|++.-.+.++.+...+.+.|
T Consensus 249 EYLlK~~il~g~~-~~~y~~m~~~a~~~i~~~l~~~~ 284 (503)
T 1hcu_A 249 EYLIKMYLYDPVA-FAHYKDRWVLGADSTIGHLGSHP 284 (503)
T ss_dssp HHHHHHHHHCTTT-THHHHHHHHHHHHHHHHHTEECB
T ss_pred HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhccCC
Confidence 8899999999874 36788888888888777776555
No 303
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=93.48 E-value=4.3 Score=45.71 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=70.3
Q ss_pred CCCCCCCC---CCCCChhHH--HHH-HHhhh---hhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCC-
Q 003187 299 RFGGFGSA---PKFPRPVEI--QMM-LYHSK---KLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE- 368 (840)
Q Consensus 299 ~~GGfg~a---PKFP~~~~l--~~L-l~~~~---~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~- 368 (840)
..|||..| -||-.|+.. ..| +.+.. .... ..+-+.+++.+..-++-|.+ .++.. |+|| +.|..
T Consensus 48 l~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~---~~~~~d~ldeikwg~D~llk--~~~~~-g~~y-~qVgd~ 120 (433)
T 1ks8_A 48 LTGGYFDAGDFVKFGFPMAYTATVLAWGLIDFEAGYSS---AGALDDGRKAVKWATDYFIK--AHTSQ-NEFY-GQVGQG 120 (433)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHTHHHHHH---TTCHHHHHHHHHHHHHHHHH--HCCBT-TBEE-EEESCH
T ss_pred CCCceeECCCCCeeccchHHHHHHHHHHHHHhHHhhhc---CCchHHHHHHHHHHHHHHHH--hccCC-CcEE-EEeCCC
Confidence 57998554 677766544 222 22211 1111 12247889999988888877 55543 6777 45532
Q ss_pred -----CCCCCCCcc-------------hHHHHHHHHHHHHHHHHccC--Ch----HHHHHHHHHHHHHHHh
Q 003187 369 -----RWHVPHFEK-------------MLYDQGQLANVYLDAFSLTK--DV----FYSYICRDILDYLRRD 415 (840)
Q Consensus 369 -----~W~vPHFEK-------------MLYDNA~Ll~~ya~Ay~~tg--d~----~y~~~A~~t~~fl~r~ 415 (840)
-|..|.-.. .--..+..+.+++.|+++.+ |+ .+++.|++..+|..+.
T Consensus 121 ~~Dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D~~yA~~~L~~A~~~~~fa~~~ 191 (433)
T 1ks8_A 121 DADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFANNY 191 (433)
T ss_dssp HHHHTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcCCcccCCHhhCCCCCceeeccCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHC
Confidence 567665321 12357889999999999997 44 4577889999998873
No 304
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=93.12 E-value=0.26 Score=47.59 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=20.4
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVES 160 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~et 160 (840)
..+|..++.|+..+|+||+.++...
T Consensus 25 ~~a~v~i~~f~D~~Cp~C~~~~~~~ 49 (175)
T 1z6m_A 25 SNAPVKMIEFINVRCPYCRKWFEES 49 (175)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCCeEEEEEECCCCcchHHHHHHH
Confidence 3466678889999999999998754
No 305
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=93.02 E-value=0.086 Score=51.31 Aligned_cols=19 Identities=5% Similarity=-0.393 Sum_probs=16.9
Q ss_pred cCCCEEEEEe-ccCChhhhh
Q 003187 137 RDVPIFLSIG-YSTCHWCHV 155 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~ 155 (840)
.+|+|+|.|+ ++||+.|..
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~ 49 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSK 49 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHH
T ss_pred CCCcEEEEEeCCCCCCCCCH
Confidence 5889999886 999999997
No 306
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=92.89 E-value=7.4 Score=44.29 Aligned_cols=288 Identities=15% Similarity=0.097 Sum_probs=155.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHcc-CC-----------hHHHHHHHHHHHHHHHhccCCCCceEeeccCCcccccc
Q 003187 369 RWHVPHFEKMLYDQGQLANVYLDAFSLT-KD-----------VFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEG 436 (840)
Q Consensus 369 ~W~vPHFEKMLYDNA~Ll~~ya~Ay~~t-gd-----------~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~ 436 (840)
+-.|+-||-- -++|-.++-||.++ ++ +.+++.|.+..+-|+--+-.|.|-=|...+-.....
T Consensus 80 ~~~vsvFETt----IR~LGGLLSAy~Ls~g~~~~~~~~~~~~~~lL~kA~dLadrLlpAF~TptgiP~~~vnl~~~~~-- 153 (475)
T 2ri9_A 80 SDTVSLFETT----IRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFDTPSGVPYNNINITSHGN-- 153 (475)
T ss_dssp SSCEEHHHHH----HHHHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHHHHGGGGCSSSSCCCSEECTTTCCB--
T ss_pred CCccchhhee----hHhHhHHhHHHHhccCccccccccccchHHHHHHHHHHHHHHHHhhcCCCCCCCceeecccCCC--
Confidence 3456668754 45888888888888 76 799999999999999877777764444333211000
Q ss_pred cccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCCcceeeccCCc----hHHHHhcCCCHHHHHHHH
Q 003187 437 ATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS----SASASKLGMPLEKYLNIL 512 (840)
Q Consensus 437 ~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg~nvL~~~~~~----~~~a~~~g~~~e~l~~~l 512 (840)
.. .+.+.+.-..+. ..++...|- .+..+..
T Consensus 154 ---~~-----------------------------------------~~~~~~Ae~gsl~LEF~~LS~lTGd--~~Y~~~a 187 (475)
T 2ri9_A 154 ---DG-----------------------------------------ATTNGLAVTGTLVLEWTRLSDLTGD--EEYAKLS 187 (475)
T ss_dssp ---CC-----------------------------------------CSEEEHHHHHSCHHHHHHHHHHHSC--THHHHHH
T ss_pred ---cC-----------------------------------------CCccchhccccceeeHHHHHHHhCC--HHHHHHH
Confidence 00 000111111110 012222221 2344566
Q ss_pred HHHHHHHHhhh--cCCCCCC-----Ccch------hhhcHHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHH
Q 003187 513 GECRRKLFDVR--SKRPRPH-----LDDK------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYM 576 (840)
Q Consensus 513 ~~~r~kL~~~R--~~R~~P~-----~DdK------iltsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yl 576 (840)
+.+.+.|.+.| .....|. +|-. -..+|.|..-+ =|.+.+..+++. .+.|+
T Consensus 188 ~~~~~~l~~~~~~~~~~~~GL~p~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~il~g~~--------------~~~~~ 253 (475)
T 2ri9_A 188 QKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYVYDPKR--------------FETYK 253 (475)
T ss_dssp HHHHHHHHSCSSGGGCSBTTBCCSEEETTTCCBCCCCBCSSTTTHHHHHHHHHHHHHCTTT--------------THHHH
T ss_pred HHHHHHHHhhccccccCCCCCcceEEeCCCCcccCCceeecCCcchHHHHHHHHHHHcCCc--------------hHHHH
Confidence 67777777655 2111121 1110 12344444433 467777777652 25789
Q ss_pred HHHHHHHHHHHHhccccC---CC-eEEEeecCCCCCCCCCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcc
Q 003187 577 EVAESAASFIRRHLYDEQ---TH-RLQHSFRNGPSKAPGFLDDYAFLISGLLDLYE-FGSGTKWLVWAIELQNTQDELFL 651 (840)
Q Consensus 577 e~A~~~~~fl~~~l~d~~---~G-~l~~~~~~g~~~~~~~leDyA~~i~aLl~LYe-aTgd~~yL~~A~~L~~~~~~~F~ 651 (840)
++=.++++-+++|+.... .+ .+...+.++.. . ...+--+.++-|++.|.- ...++++++.|++|.+.+...+.
T Consensus 254 ~m~~~a~~~i~~~l~~~~~~~~~~~~v~~~~~~~~-~-~~~~hL~cF~~G~~aLgg~~~~~~~~~~~a~~l~~tC~~~y~ 331 (475)
T 2ri9_A 254 DRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNY-D-LSSQHLTCFDGGSFLLGGTVLDRQDFIDFGLELVDGCEATYN 331 (475)
T ss_dssp HHHHHHHHHHHHHTEECCSSCTTCCEECEEETTEE-E-CEEETGGGGHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCCceEEEeccCCcc-c-cccchHHHhHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 998999999999886421 12 23333333221 1 112222344556666554 44678999999999999887665
Q ss_pred cccCCc----cccCCCCCCc-c-ccccccCCCCCCCChH---HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003187 652 DREGGG----YFNTTGEDPS-V-LLRVKEDHDGAEPSGN---SVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 722 (840)
Q Consensus 652 D~~~Gg----yf~t~~~~~~-l-~~R~k~~~D~a~PS~N---s~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~ 722 (840)
...+|- |.......+. . -...+..+ ......+ -..++.+.-|+++||+ +.|++.+.++++++....
T Consensus 332 ~~~tGl~PE~~~~~~~~~~~~~~~~~~~~g~-~~~~~~y~LRPE~iES~fylyR~TgD---~~yr~~gw~~f~ai~k~~- 406 (475)
T 2ri9_A 332 STLTKIGPDSWGWDPKKVPSDQKEFYEKAGF-YISSGSYVLRPEVIESFYYAHRVTGK---EIYRDWVWNAFVAINSTC- 406 (475)
T ss_dssp TSSSSCCCSEEECCTTCCCGGGHHHHHHHSC-EEEECCBCSCCHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHT-
T ss_pred hcccCCCCcEEEeecCcccccccccccCCCc-eecccccCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHH-
Confidence 433442 2222211110 0 00000000 0000001 1678899999999996 899999999999976544
Q ss_pred hhhhhHH
Q 003187 723 DMAMAVP 729 (840)
Q Consensus 723 ~~p~~~~ 729 (840)
+.+.+++
T Consensus 407 rt~~G~a 413 (475)
T 2ri9_A 407 RTDSGFA 413 (475)
T ss_dssp BCSSSBC
T ss_pred ccccCCc
Confidence 4444443
No 307
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=92.81 E-value=0.16 Score=48.11 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCEEEEEec----cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G 203 (840)
.+.++...+.++ |.|+..+ +||++|+...+ .|.. ++-.|..| |+++.|++... ++.++|...
T Consensus 25 ~~~v~~~i~~~~-Vvvy~ks~~~~~~Cp~C~~ak~-~L~~------~gv~y~~v--dI~~d~~~~~~----L~~~~G~~t 90 (135)
T 2wci_A 25 IEKIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQ-ALAA------CGERFAYV--DILQNPDIRAE----LPKYANWPT 90 (135)
T ss_dssp HHHHHHHHHHCS-EEEEESBCSSSBSSHHHHHHHH-HHHT------TCSCCEEE--EGGGCHHHHHH----HHHHHTCCS
T ss_pred HHHHHHHhccCC-EEEEEEecCCCCCCccHHHHHH-HHHH------cCCceEEE--ECCCCHHHHHH----HHHHHCCCC
Confidence 556666666665 6654444 89999998753 3322 12245554 54444554333 344457888
Q ss_pred CCcEEEECCCCceec
Q 003187 204 WPLSVFLSPDLKPLM 218 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~ 218 (840)
+|.. |+ +|+.+.
T Consensus 91 vP~V-fI--~G~~iG 102 (135)
T 2wci_A 91 FPQL-WV--DGELVG 102 (135)
T ss_dssp SCEE-EE--TTEEEE
T ss_pred cCEE-EE--CCEEEE
Confidence 8975 44 456553
No 308
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=92.61 E-value=0.094 Score=50.34 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=16.7
Q ss_pred cCCCEEEEEe-ccCChhhh
Q 003187 137 RDVPIFLSIG-YSTCHWCH 154 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~ 154 (840)
.||+|+|.|+ ++||+.|.
T Consensus 34 ~gk~vvl~f~~~~~c~~C~ 52 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCS 52 (162)
T ss_dssp TTSEEEEEEESCTTCHHHH
T ss_pred CCCcEEEEEeCCCCCCCCC
Confidence 5899999999 89999999
No 309
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=92.45 E-value=0.62 Score=47.50 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003187 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
..|+++++||+|++.....| |.. .| .++-++|+.|..
T Consensus 130 ~~p~~fiID~~G~I~~~~~~-~~~--~g-r~~~eil~~i~~ 166 (224)
T 1prx_A 130 TARVVFVFGPDKKLKLSILY-PAT--TG-RNFDEILRVVIS 166 (224)
T ss_dssp TCCEEEEECTTSBEEEEEEC-CTT--BC-CCHHHHHHHHHH
T ss_pred cceEEEEECCCCEEEEEEec-CCC--CC-CCHHHHHHHHHH
Confidence 37999999999999876443 211 11 256677766653
No 310
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=92.18 E-value=0.18 Score=51.48 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=23.2
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003187 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
+|+++++||+|++.....|-... | .++-++|+.|.
T Consensus 128 ~p~~flID~~G~I~~~~~~~~~~---g-~~~~ell~~i~ 162 (220)
T 1xcc_A 128 CRCLFFISPEKKIKATVLYPATT---G-RNAHEILRVLK 162 (220)
T ss_dssp CEEEEEECTTSBEEEEEEECTTB---C-CCHHHHHHHHH
T ss_pred cceEEEECCCCEEEEEEecCCCC---C-CCHHHHHHHHH
Confidence 79999999999998765431111 1 25666666665
No 311
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=92.09 E-value=0.41 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.7
Q ss_pred cCCCEEEEEeccCChhhhhhhh
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEV 158 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~ 158 (840)
.++|++|.|..-.|++|+.++.
T Consensus 20 ~~~~~vvEf~dy~Cp~C~~~~~ 41 (184)
T 4dvc_A 20 SSSPVVSEFFSFYCPHCNTFEP 41 (184)
T ss_dssp CSSCEEEEEECTTCHHHHHHHH
T ss_pred CCCCEEEEEECCCCHhHHHHhH
Confidence 4689999999999999999974
No 312
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=91.81 E-value=0.3 Score=45.09 Aligned_cols=75 Identities=11% Similarity=0.155 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCEEEEEec----cCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~ 202 (840)
.+.+++.-++++ |.|+.-. +||++|+...+ .|+ .++- .|..+ |+++.|++.+ .+...+|..
T Consensus 10 ~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak~-lL~------~~gv~~~~~v--dV~~d~~~~~----~l~~~tg~~ 75 (118)
T 2wem_A 10 AEQLDALVKKDK-VVVFLKGTPEQPQCGFSNAVVQ-ILR------LHGVRDYAAY--NVLDDPELRQ----GIKDYSNWP 75 (118)
T ss_dssp HHHHHHHHHHSS-EEEEESBCSSSBSSHHHHHHHH-HHH------HTTCCCCEEE--ESSSCHHHHH----HHHHHHTCC
T ss_pred HHHHHHHhccCC-EEEEEecCCCCCccHHHHHHHH-HHH------HcCCCCCEEE--EcCCCHHHHH----HHHHHhCCC
Confidence 456677777776 4443332 49999999753 222 2222 25554 4445555433 334445888
Q ss_pred CCCcEEEECCCCceecc
Q 003187 203 GWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~ 219 (840)
.+|..++ +|+.|.+
T Consensus 76 tvP~vfI---~g~~IGG 89 (118)
T 2wem_A 76 TIPQVYL---NGEFVGG 89 (118)
T ss_dssp SSCEEEE---TTEEEES
T ss_pred CcCeEEE---CCEEEeC
Confidence 8998754 4565543
No 313
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=91.80 E-value=8.6 Score=46.14 Aligned_cols=82 Identities=15% Similarity=0.051 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhCCCccc----------C-CCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHcc---CChHH
Q 003187 336 EGQKMVLFTLQCMAKGGIHDH----------V-GGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT---KDVFY 401 (840)
Q Consensus 336 ~~~~~a~~TL~~Ma~GGi~D~----------v-~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~t---gd~~y 401 (840)
+..+++.+.++-|...=+.|. . .|||. |+.... .---.-+.|..+.++..+.... +++.+
T Consensus 406 ~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~-f~~~~~-----~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~ 479 (732)
T 1w6k_A 406 EFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFS-FSTLDC-----GWIVSDCTAEALKAVLLLQEKCPHVTEHIP 479 (732)
T ss_dssp GGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCB-SSCTTT-----CCBCHHHHHHHHHHHHHHHHHCTTCCSCCC
T ss_pred hhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeec-CCCCCC-----CCCccccHHHHHHHHHHHhcccccccchhh
Confidence 445566666666654323332 1 17774 665432 2234557899999999888764 45667
Q ss_pred HHHHHHHHHHHHHhccCCCCceE
Q 003187 402 SYICRDILDYLRRDMIGPGGEIF 424 (840)
Q Consensus 402 ~~~A~~t~~fl~r~m~~~~Ggfy 424 (840)
.+.++++++||++ +++++|||.
T Consensus 480 ~~~i~~av~wLls-~Q~~DGgw~ 501 (732)
T 1w6k_A 480 RERLCDAVAVLLN-MRNPDGGFA 501 (732)
T ss_dssp HHHHHHHHHHHHT-TCCTTSCBC
T ss_pred HHHHHHHHHHHHH-hcCCCCCEE
Confidence 8899999999997 889999985
No 314
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=91.66 E-value=0.66 Score=42.13 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCEEEEE-e---ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003187 128 EEAFAEARKRDVPIFLSI-G---YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~-g---~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G 203 (840)
.+.++..-++++-|+ +. | ++||++|+...+ .|+ ..+-.|..+ |+++.|++.. .+...+|...
T Consensus 6 ~~~v~~~i~~~~Vvl-f~kg~~~~~~Cp~C~~ak~-~L~------~~gi~y~~~--di~~d~~~~~----~l~~~~g~~t 71 (111)
T 3zyw_A 6 NLRLKKLTHAAPCML-FMKGTPQEPRCGFSKQMVE-ILH------KHNIQFSSF--DIFSDEEVRQ----GLKAYSSWPT 71 (111)
T ss_dssp HHHHHHHHTSSSEEE-EESBCSSSBSSHHHHHHHH-HHH------HTTCCCEEE--EGGGCHHHHH----HHHHHHTCCS
T ss_pred HHHHHHHHhcCCEEE-EEecCCCCCcchhHHHHHH-HHH------HcCCCeEEE--ECcCCHHHHH----HHHHHHCCCC
Confidence 566777777665444 33 2 299999999753 232 122246554 4444455433 3344458888
Q ss_pred CCcEEEECCCCceecc
Q 003187 204 WPLSVFLSPDLKPLMG 219 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~~ 219 (840)
.|..++ +|+.|.|
T Consensus 72 vP~ifi---~g~~iGG 84 (111)
T 3zyw_A 72 YPQLYV---SGELIGG 84 (111)
T ss_dssp SCEEEE---TTEEEEC
T ss_pred CCEEEE---CCEEEec
Confidence 898754 5665543
No 315
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=91.52 E-value=0.62 Score=42.00 Aligned_cols=75 Identities=11% Similarity=0.165 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCEEEEEec----cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G 203 (840)
.+.++.+-++++ |.|+.-. +||++|+...+ .|. ..+-.|..+.|+ +.|++... +..++|...
T Consensus 8 ~~~v~~~i~~~~-Vvvy~k~t~~~p~Cp~C~~ak~-~L~------~~gi~~~~~dI~--~~~~~~~~----l~~~~g~~t 73 (109)
T 3ipz_A 8 KDTLEKLVNSEK-VVLFMKGTRDFPMCGFSNTVVQ-ILK------NLNVPFEDVNIL--ENEMLRQG----LKEYSNWPT 73 (109)
T ss_dssp HHHHHHHHTSSS-EEEEESBCSSSBSSHHHHHHHH-HHH------HTTCCCEEEEGG--GCHHHHHH----HHHHHTCSS
T ss_pred HHHHHHHHccCC-EEEEEecCCCCCCChhHHHHHH-HHH------HcCCCcEEEECC--CCHHHHHH----HHHHHCCCC
Confidence 455666767665 5544333 59999999753 222 223346555444 44554333 334458889
Q ss_pred CCcEEEECCCCceecc
Q 003187 204 WPLSVFLSPDLKPLMG 219 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~~ 219 (840)
+|.. |+ +|+.|.|
T Consensus 74 vP~i-fi--~g~~iGG 86 (109)
T 3ipz_A 74 FPQL-YI--GGEFFGG 86 (109)
T ss_dssp SCEE-EE--TTEEEEC
T ss_pred CCeE-EE--CCEEEeC
Confidence 9955 44 4555543
No 316
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=91.43 E-value=0.4 Score=44.36 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCEEEEEec----cCChhhhhhhhcccCCHHHHHHHhcCe-EEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWF-VSIKVDREERPDVDKVYMTYVQALYGGG 202 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~wC~~me~etf~d~eVa~~ln~~F-V~vkvD~ee~pd~~~~y~~~~~~~~g~~ 202 (840)
.+.++.+-++++ |+|+.-. +||++|+...+ .|+. ++-.+ +...+|+++.+++.. .+...+|..
T Consensus 6 ~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak~-lL~~------~gv~~~~~~~~dv~~~~~~~~----~l~~~sg~~ 73 (121)
T 3gx8_A 6 RKAIEDAIESAP-VVLFMKGTPEFPKCGFSRATIG-LLGN------QGVDPAKFAAYNVLEDPELRE----GIKEFSEWP 73 (121)
T ss_dssp HHHHHHHHHSCS-EEEEESBCSSSBCTTHHHHHHH-HHHH------HTBCGGGEEEEECTTCHHHHH----HHHHHHTCC
T ss_pred HHHHHHHhccCC-EEEEEeccCCCCCCccHHHHHH-HHHH------cCCCcceEEEEEecCCHHHHH----HHHHHhCCC
Confidence 345666667666 4444333 59999999753 2221 22221 133456665565443 334445777
Q ss_pred CCCcEEEECCCCceec
Q 003187 203 GWPLSVFLSPDLKPLM 218 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~ 218 (840)
.+|..++ +|+.|.
T Consensus 74 tvP~vfI---~g~~iG 86 (121)
T 3gx8_A 74 TIPQLYV---NKEFIG 86 (121)
T ss_dssp SSCEEEE---TTEEEE
T ss_pred CCCeEEE---CCEEEe
Confidence 8888754 455554
No 317
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=91.24 E-value=2.6 Score=45.87 Aligned_cols=181 Identities=12% Similarity=0.034 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHHHH-HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHH
Q 003187 505 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL-VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAA 583 (840)
Q Consensus 505 ~e~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWNal-~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~ 583 (840)
++++.+..+..+++.+..-.+-+.+.-.+..++.-.|+ |+-|+... | + +.=.++.
T Consensus 16 ~~~~~~~w~~~k~~~l~~~GrviD~~n~~~t~SEGqgYGMl~Av~~~-----d----------------~---~~FD~l~ 71 (334)
T 1wzz_A 16 PDAVAQQWAIFRAKYLRPSGRVVDTGNGGESHSEGQGYGMLFAASAG-----D----------------L---ASFQSMW 71 (334)
T ss_dssp TTHHHHHHHHHHHHHBCTTSCBCCSSSSCEEEHHHHHHHHHHHHHHT-----C----------------H---HHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCceEEecCCCCEEecHHHHHHHHHHHHhC-----C----------------H---HHHHHHH
Confidence 35666778888888886543333333333235666665 33333322 2 1 1224678
Q ss_pred HHHHHhccccCCCeEEEeecC-CCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCccc
Q 003187 584 SFIRRHLYDEQTHRLQHSFRN-GPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 659 (840)
Q Consensus 584 ~fl~~~l~d~~~G~l~~~~~~-g~~---~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf 659 (840)
.|.++++...++|.+-|.+.. +.. +...=.++=-+++.||+...+..++..|++.|++|++.+.++=....+|...
T Consensus 72 ~wt~~~l~~~~~~L~aW~~~~~~~~~v~d~n~AtDgDl~IA~ALl~A~~~Wg~~~Y~~~A~~il~~i~~~~v~~~~g~~~ 151 (334)
T 1wzz_A 72 MWARTNLQHTNDKLFSWRFLKGHQPPVPDKNNATDGDLLIALALGRAGKRFQRPDYIQDAMAIYGDVLNLMTMKAGPYVV 151 (334)
T ss_dssp HHHHHHTBCSSSSCBCSEEETTSSSSSCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHEEEETTEEE
T ss_pred HHHHHHhccCCCCceEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccCCCCeEE
Confidence 888999875556777676643 221 2223345667899999999999999999999999999888775544334322
Q ss_pred cCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 003187 660 NTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFE 718 (840)
Q Consensus 660 ~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~ 718 (840)
..+.... . .+...+..-||=- +...+-.++.++++ ..|.+.++..++.+.
T Consensus 152 llPg~~g---f-~~~~~~~~npSY~--~p~~~~~fa~~~~~---~~W~~~~~~~~~ll~ 201 (334)
T 1wzz_A 152 LMPGAVG---F-TKKDSVILNLSYY--VMPSLLQAFDLTAD---PRWRQVMEDGIRLVS 201 (334)
T ss_dssp ECSCSSS---C-BCSSEEEECGGGC--CHHHHHHHHHHHCC---THHHHHHHHHHHHHH
T ss_pred ECCCccc---c-cCCCCCeechhhc--CHHHHHHHHHccCC---chHHHHHHHHHHHHH
Confidence 2222110 0 0000011123322 22456667888775 568888877666653
No 318
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=91.24 E-value=0.23 Score=49.26 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=14.6
Q ss_pred cCCCEEE-EEeccCChhhhh
Q 003187 137 RDVPIFL-SIGYSTCHWCHV 155 (840)
Q Consensus 137 e~KpI~l-~~g~~wC~wC~~ 155 (840)
.+|+|+| .|.++||+.|..
T Consensus 55 ~Gk~vvL~f~~a~wcp~C~~ 74 (184)
T 3uma_A 55 KGKRVVLFAVPGAFTPTCSL 74 (184)
T ss_dssp TTSEEEEEEESCTTCHHHHH
T ss_pred CCCCEEEEEEcCCCCCCcCH
Confidence 4776555 466999999997
No 319
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=90.96 E-value=0.11 Score=49.84 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=17.4
Q ss_pred cCCCEEEEEe-ccCChhhhhh
Q 003187 137 RDVPIFLSIG-YSTCHWCHVM 156 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~m 156 (840)
.||+++|.|+ ++||+.|...
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e 62 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATS 62 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHH
T ss_pred CCCeEEEEEECCCCCCccHHH
Confidence 4899999998 7999999753
No 320
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=90.72 E-value=3 Score=45.99 Aligned_cols=71 Identities=11% Similarity=-0.023 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 620 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 620 (840)
+=++.++..+++++++ ++|++.|+++++.+.+.- + ....+++....|=.+
T Consensus 282 ~Gi~~~l~~~~~~~~d----------------~~~~~~a~~~~~~~~~~~-----~---------~~~~~~LCHG~aG~~ 331 (409)
T 2g0d_A 282 PGISLLYLYGGLALDN----------------DYFVDKAEKILESAMQRK-----L---------GIDSYMICHGYSGLI 331 (409)
T ss_dssp HHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHC-----T---------TCCSCCTTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHhc-----c---------CCCCCCCCChHHHHH
Confidence 3346677889999987 789999999999888751 0 012346778888889
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 003187 621 SGLLDLYEFGSGTKWLVWAIE 641 (840)
Q Consensus 621 ~aLl~LYeaTgd~~yL~~A~~ 641 (840)
..++.+|+.|++++|++.|.+
T Consensus 332 ~~l~~l~~~~~~~~~~~~a~~ 352 (409)
T 2g0d_A 332 EICSLFKRLLNTKKFDSYMEE 352 (409)
T ss_dssp HHHHHHHHHHCCCTTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999987
No 321
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=90.20 E-value=0.58 Score=39.99 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=35.9
Q ss_pred EEecc----CChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC---CCccHHHHHHHHHHHhcCCC-----CCCcEEEEC
Q 003187 144 SIGYS----TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE---ERPDVDKVYMTYVQALYGGG-----GWPLSVFLS 211 (840)
Q Consensus 144 ~~g~~----wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e---e~pd~~~~y~~~~~~~~g~~-----G~P~~vfl~ 211 (840)
-++.+ ||++|+...+ .| +..+-.|..+.||.. +.++..+. +...+|.. .+|..++
T Consensus 4 iY~~~~~~~~Cp~C~~ak~-~L------~~~gi~y~~idI~~~~~~~~~~~~~~----l~~~~g~~~~~~~tvP~v~i-- 70 (87)
T 1aba_A 4 VYGYDSNIHKCGPCDNAKR-LL------TVKKQPFEFINIMPEKGVFDDEKIAE----LLTKLGRDTQIGLTMPQVFA-- 70 (87)
T ss_dssp EEECCTTTSCCHHHHHHHH-HH------HHTTCCEEEEESCSBTTBCCHHHHHH----HHHHHTCSCCTTCCSCEEEC--
T ss_pred EEEeCCCCCcCccHHHHHH-HH------HHcCCCEEEEEeeccccccCHHHHHH----HHHHhCCCCCCCCccCEEEE--
Confidence 46889 9999998753 22 222334665555422 34443332 33344777 8897654
Q ss_pred CCCceecc
Q 003187 212 PDLKPLMG 219 (840)
Q Consensus 212 p~g~~~~~ 219 (840)
++|+.+.+
T Consensus 71 ~~g~~igG 78 (87)
T 1aba_A 71 PDGSHIGG 78 (87)
T ss_dssp TTSCEEES
T ss_pred ECCEEEeC
Confidence 57777644
No 322
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=89.95 E-value=0.63 Score=54.80 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC--C--CC--CCCCCc
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN--G--PS--KAPGFL 613 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~--g--~~--~~~~~l 613 (840)
.+-+..|||.|++++++. +..| ..++|+.|+++++|..++- |.+.....+ + .. ...++.
T Consensus 290 ~~~~AAalAaas~vfk~~--d~~y--------a~~~L~~A~~~~~fa~~~~-----~~y~~~~~~~~~~~~~~Y~ss~~~ 354 (609)
T 1ut9_A 290 TLNFAATLAQSARLWKDY--DPTF--------AADCLEKAEIAWQAALKHP-----DIYAEYTPGSGGPGGGPYNDDYVG 354 (609)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHCT-----TCCBCCCCSSSSCBSCCCCBSCCH
T ss_pred HHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCc-----ccccccccccCccCCCCCCCCCcc
Confidence 355678899999999751 1122 2679999999999998863 111000000 0 00 112233
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003187 614 DDYAFLISGLLDLYEFGSGTKWLVWAIEL 642 (840)
Q Consensus 614 eDyA~~i~aLl~LYeaTgd~~yL~~A~~L 642 (840)
-.+++|.++||.+|||..||+.|++.
T Consensus 355 ---DEl~WAAawLy~ATgd~~Yl~~a~~~ 380 (609)
T 1ut9_A 355 ---DEFYWAACELYVTTGKDEYKNYLMNS 380 (609)
T ss_dssp ---HHHHHHHHHHHHHHCCHHHHHHHHTS
T ss_pred ---cHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 34588999999999999999999864
No 323
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=89.73 E-value=0.39 Score=47.07 Aligned_cols=36 Identities=8% Similarity=-0.209 Sum_probs=21.3
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHH
Q 003187 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRK 240 (840)
Q Consensus 203 G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~ 240 (840)
..|.++++| +|++.+...+-.+. .........+|++
T Consensus 137 ~~r~tfvID-dG~I~~~~v~~~~~-g~~~~~~~~vl~~ 172 (173)
T 3mng_A 137 LKRFSMVVQ-DGIVKALNVEPDGT-GLTCSLAPNIISQ 172 (173)
T ss_dssp BCCEEEEEE-TTEEEEEEECTTSS-CSSTTSHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEEeCCCC-CcchHHHHHHHHh
Confidence 469999999 99988764332111 1223455666553
No 324
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=89.41 E-value=0.57 Score=47.93 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=55.3
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC---------------------Cc---cHHHHH
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE---------------------RP---DVDKVY 191 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee---------------------~p---d~~~~y 191 (840)
.||+|+|.|+ .+||+.|.. |-..|++. ..++-+.+.+.|-|..+. -| |.+...
T Consensus 51 ~GK~vVL~FyP~d~TpvCt~-E~~~f~~~-~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~v 128 (216)
T 3sbc_A 51 KGKYVVLAFIPLAFTFVSPT-EIIAFSEA-AKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSL 128 (216)
T ss_dssp TTSEEEEEECSCTTSSHHHH-HHHHHHHH-HHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCcCch-hhhHHHHh-HHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHH
Confidence 4899999999 999999986 44455442 223333345544443321 01 011111
Q ss_pred HHHHHHhcCCC--CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003187 192 MTYVQALYGGG--GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 192 ~~~~~~~~g~~--G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
.+....+.... ..+.++++||+|++.+...|-.+.+ .++-++|+.|..
T Consensus 129 ak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~g----rn~dEiLr~l~A 178 (216)
T 3sbc_A 129 SRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVG----RNVDEALRLVEA 178 (216)
T ss_dssp HHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBC----CCHHHHHHHHHH
T ss_pred HHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCC----CCHHHHHHHHHH
Confidence 11111111112 2478999999999877654422222 367787777653
No 325
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=89.29 E-value=13 Score=44.03 Aligned_cols=160 Identities=11% Similarity=0.034 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC-CeEEEeecCCCCCCCCCcc---
Q 003187 539 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT-HRLQHSFRNGPSKAPGFLD--- 614 (840)
Q Consensus 539 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~-G~l~~~~~~g~~~~~~~le--- 614 (840)
..++.++.|+.++.-+++.-....++-|-.+-..++.|+.++-..+||++-. +++. |.++|...++.-.....++
T Consensus 198 p~a~t~~~L~w~~~~~~~~~~~~~~~ipes~~~~~d~ldeikwg~Dyllk~q-~~~~~g~~y~~vgd~~~~~~~~Pe~~~ 276 (639)
T 1clc_A 198 NAGITVGSMFLAWEHFKDQLEPVALEIPEKNNSIPDFLDELKYEIDWILTMQ-YPDGSGRVAHKVSTRNFGGFIMPENEH 276 (639)
T ss_dssp HHHHHHHHHHHHHHHSHHHHTTCCCSSGGGGSSSCHHHHHHHHHHHHHHTTB-CTTSSCCBEEEEECSSCCCSCCGGGCC
T ss_pred cHHHHHHHHHHHHHHhhhhhhccccCCccCCCcHHHHHHHHHHHHHHHHHhc-cccCCCeEEEEecCCCCCCCCCchhcC
Confidence 4677788888888776652110011112112234789999999999999753 4445 7888876443111001111
Q ss_pred -----------hHHHHHHHHHHHHHHcC--CH----HHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCC
Q 003187 615 -----------DYAFLISGLLDLYEFGS--GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHD 677 (840)
Q Consensus 615 -----------DyA~~i~aLl~LYeaTg--d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D 677 (840)
--+.++.+|...+.+.. |+ ++|+.|+++++.+.++ .|.+|..+.... ...|.
T Consensus 277 ~~R~~~~~~s~~a~e~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~-----~~~~y~~~~~~~------~g~Y~ 345 (639)
T 1clc_A 277 DERFFVPWSSAATADFVAMTAMAARIFRPYDPQYAEKCINAAKVSYEFLKNN-----PANVFANQSGFS------TGEYA 345 (639)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHC-----CSCCCCCCTTCC------SCCCC
T ss_pred CCceEecCCcHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCCcccc------ccccC
Confidence 12344555555555543 44 4577788888777653 233333221000 00110
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003187 678 GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 715 (840)
Q Consensus 678 ~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~ 715 (840)
. -+-.-.++++-..|+..||+ ..|++.++....
T Consensus 346 s--s~~~DEl~WAAawLy~ATgd---~~Yl~~a~~~~~ 378 (639)
T 1clc_A 346 T--VSDADDRLWAAAEMWETLGD---EEYLRDFENRAA 378 (639)
T ss_dssp C--SCSHHHHHHHHHHHHHHHCC---HHHHHHHHHHHH
T ss_pred C--CCcchHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 0 11234677888889999986 789999886543
No 326
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=88.94 E-value=0.63 Score=40.39 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=33.1
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcC--CCCCCcEEEECCCCcee
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYG--GGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~~g--~~G~P~~vfl~p~g~~~ 217 (840)
-++.++|++|+..++ -..+.++|+++ .-...+|++..|+... .++..+| ...+|..+ + +|+.+
T Consensus 6 ly~~~~C~~c~~~~~----~~~ak~~L~~~~i~~~~~di~~~~~~~~----~l~~~~g~~~~~vP~if-i--~g~~i 71 (93)
T 1t1v_A 6 VYSTSVTGSREIKSQ----QSEVTRILDGKRIQYQLVDISQDNALRD----EMRTLAGNPKATPPQIV-N--GNHYC 71 (93)
T ss_dssp EEECSSCSCHHHHHH----HHHHHHHHHHTTCCCEEEETTSCHHHHH----HHHHHTTCTTCCSCEEE-E--TTEEE
T ss_pred EEEcCCCCCchhhHH----HHHHHHHHHHCCCceEEEECCCCHHHHH----HHHHHhCCCCCCCCEEE-E--CCEEE
Confidence 368899999953332 12334455542 2233456655554332 2333446 55788764 3 45544
No 327
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=88.59 E-value=7.3 Score=45.05 Aligned_cols=161 Identities=10% Similarity=-0.023 Sum_probs=94.5
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC--hHHHHHHHHHHHHHHHHhccccCCCeEEEeecCC-------CC
Q 003187 537 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSD--RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-------PS 607 (840)
Q Consensus 537 tsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~--~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g-------~~ 607 (840)
+-..+..++.|+.++..+++. ..+.++-|-.+-. .++.|+.++-..+||++.. +++.|.++|...+. .|
T Consensus 151 ~~p~a~t~~~L~~a~~~~~~~-~~~~~~i~es~~~~~~~d~ldeikwg~D~llk~~-~~~~g~~y~~v~~~~w~g~~~~P 228 (537)
T 3gzk_A 151 TVPAAKAVADLLLAHEYFPAA-LAHVRPMRSVHRAPHLPPALEVAREEIAWLLTMQ-DPATGGVYHKVTTPSFPPLDTRP 228 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCHHH-HHTCCCSGGGSCSSCCCHHHHHHHHHHHHHHHTB-CTTTCCBBSEEECSSCCCTTCCG
T ss_pred cccHHHHHHHHHHHHHHhhhh-hhhhhccccccCcccHHHHHHHHHHHHHHHHhcc-cCCCCeEEEEecCCCcCCCCcCc
Confidence 334566667777777665431 1111111111112 3789999999999999744 33457788764321 11
Q ss_pred C---CCC-----CcchHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccc
Q 003187 608 K---APG-----FLDDYAFLISGLLDLYEFGSG------TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 673 (840)
Q Consensus 608 ~---~~~-----~leDyA~~i~aLl~LYeaTgd------~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k 673 (840)
. .+. ....-+.++.+|...+.+..+ .++|+.|+++++.+.++ .+.+|..+.+. ..
T Consensus 229 e~~~~~R~~~~~~t~~~~~~AAalA~as~vf~~~D~~yA~~~L~~A~~~~~fa~~~-----~~~~~~~~~~~------~~ 297 (537)
T 3gzk_A 229 EDDDAPLVLSPISYAATATFCAAMAHAALVYRPFDPALSSCCADAARRAYAWLGAH-----EMQPFHNPDGI------LT 297 (537)
T ss_dssp GGCCSCEEECCBCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTS-----CCCCCCCCTTC------CS
T ss_pred ccCCCcceEeecCCcHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhc-----ccccccCCccc------cc
Confidence 0 011 112236678888888888887 78899999999888754 12233221100 00
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003187 674 EDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 715 (840)
Q Consensus 674 ~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~ 715 (840)
..|.. .+-.-.++++.+.|+..||+ ..|++.+++...
T Consensus 298 ~~Y~~--~~~~Del~wAA~~Ly~aTgd---~~Yl~~a~~~~~ 334 (537)
T 3gzk_A 298 GEYGD--AELRDELLWASCALLRMTGD---SAWARVCEPLLD 334 (537)
T ss_dssp CCCCC--SCCHHHHHHHHHHHHHHHCC---GGGHHHHHHHHH
T ss_pred CCcCC--CccchHHHHHHHHHHHHhCC---HHHHHHHHHhhh
Confidence 11111 12234588889999999996 789999886543
No 328
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=88.03 E-value=1.1 Score=45.60 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=43.3
Q ss_pred hHHHHHHHHhc--CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003187 127 GEEAFAEARKR--DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (840)
Q Consensus 127 ~~eAl~~Ak~e--~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~ 204 (840)
.++.++..+.. ...-++-++++||++|+...+ .++ ..+-.|..+.|+. .+... .+...+|..+.
T Consensus 155 ~~~il~~l~~~~i~~~~i~ly~~~~Cp~C~~a~~-~L~------~~~i~~~~~~i~~--~~~~~-----~l~~~~g~~~v 220 (241)
T 1nm3_A 155 ADTMLKYLAPQHQVQESISIFTKPGCPFCAKAKQ-LLH------DKGLSFEEIILGH--DATIV-----SVRAVSGRTTV 220 (241)
T ss_dssp HHHHHHHHCTTSCCCCCEEEEECSSCHHHHHHHH-HHH------HHTCCCEEEETTT--TCCHH-----HHHHHTCCSSS
T ss_pred HHHHHHHhhhhccccceEEEEECCCChHHHHHHH-HHH------HcCCceEEEECCC--chHHH-----HHHHHhCCCCc
Confidence 46677665543 223344578899999998743 222 2233566555543 34421 22334588899
Q ss_pred CcEEEECCCCceecc
Q 003187 205 PLSVFLSPDLKPLMG 219 (840)
Q Consensus 205 P~~vfl~p~g~~~~~ 219 (840)
|..++ +|+.+.+
T Consensus 221 P~~~~---~g~~i~g 232 (241)
T 1nm3_A 221 PQVFI---GGKHIGG 232 (241)
T ss_dssp CEEEE---TTEEEES
T ss_pred CEEEE---CCEEEEC
Confidence 98754 5666654
No 329
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=87.40 E-value=0.19 Score=49.67 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=30.6
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC--eEEEEEcC
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW--FVSIKVDR 181 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~--FV~vkvD~ 181 (840)
++|++|.|+..||+.|+.|+...--.+++.+.+..+ |+.+.++.
T Consensus 14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 59 (189)
T 3l9v_A 14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSL 59 (189)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSS
T ss_pred CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechh
Confidence 479999999999999999987431236676665544 44444444
No 330
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=86.96 E-value=0.81 Score=44.37 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=15.6
Q ss_pred cCC-CEEEEEeccCChhhhh
Q 003187 137 RDV-PIFLSIGYSTCHWCHV 155 (840)
Q Consensus 137 e~K-pI~l~~g~~wC~wC~~ 155 (840)
.+| .|++.|.++||+.|..
T Consensus 42 ~gk~vvl~~~~a~wcp~C~~ 61 (171)
T 2pwj_A 42 KDKKVVIFGLPGAYTGVCSS 61 (171)
T ss_dssp TTSEEEEEECSCTTCTTHHH
T ss_pred CCCCEEEEEecCCCCCCCCH
Confidence 354 6777899999999987
No 331
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.74 E-value=1 Score=40.75 Aligned_cols=64 Identities=13% Similarity=-0.002 Sum_probs=35.1
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhc--------CCCCCCcEEEECCC
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALY--------GGGGWPLSVFLSPD 213 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~~--------g~~G~P~~vfl~p~ 213 (840)
+-|+.++|++|++.++ -.++.++|+++ .-...+|+++.|+..+.+ +... |...+|.. |++
T Consensus 11 ~vy~~~~C~~C~~~~~----~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l----~~~~~~~~~~~~g~~tvP~v-fi~-- 79 (111)
T 2ct6_A 11 RVFIASSSGFVAIKKK----QQDVVRFLEANKIEFEEVDITMSEEQRQWM----YKNVPPEKKPTQGNPLPPQI-FNG-- 79 (111)
T ss_dssp EEEECSSCSCHHHHHH----HHHHHHHHHHTTCCEEEEETTTCHHHHHHH----HHSCCTTTCCSSSSCCSCEE-EET--
T ss_pred EEEEcCCCCCcccchh----HHHHHHHHHHcCCCEEEEECCCCHHHHHHH----HHHhcccccccCCCCCCCEE-EEC--
Confidence 3468899999995332 12344556553 333456776666554433 2332 55567865 443
Q ss_pred Ccee
Q 003187 214 LKPL 217 (840)
Q Consensus 214 g~~~ 217 (840)
|+.|
T Consensus 80 g~~i 83 (111)
T 2ct6_A 80 DRYC 83 (111)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 4544
No 332
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=86.37 E-value=1.1 Score=45.89 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=54.3
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC---------------------c---cHHHHH
Q 003187 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER---------------------P---DVDKVY 191 (840)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~---------------------p---d~~~~y 191 (840)
.||+|+|.|+ .+||+.|..- -..|++-- .++-+.+.+.|=|..+.. | |.+...
T Consensus 55 ~GK~vVL~FyP~d~TpvCt~E-~~~f~~~~-~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~v 132 (219)
T 3tue_A 55 KGKWVVLFFYPLDFTFVCPTE-VIAFSDSV-SRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNI 132 (219)
T ss_dssp TTSEEEEEECSCTTCSSCCHH-HHHHHTTH-HHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHH
T ss_pred CCCEEEEEEecccCCCCCchh-HhhHHHHH-hhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHH
Confidence 5899999999 9999999884 44555432 233333444444433210 1 111111
Q ss_pred HHHHHHhcCCCCC--CcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHH
Q 003187 192 MTYVQALYGGGGW--PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (840)
Q Consensus 192 ~~~~~~~~g~~G~--P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (840)
.+....+....|. -.++++||+|++.+...|-.+.+ ..+-++|+.|..+
T Consensus 133 a~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~g----r~~~EvLr~l~aL 183 (219)
T 3tue_A 133 ARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVG----RSVEEVLRLLEAF 183 (219)
T ss_dssp HHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCC----CCHHHHHHHHHHH
T ss_pred HHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCC----CCHHHHHHHHHHh
Confidence 1111111111243 36788899998876644423222 2677777766543
No 333
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=86.34 E-value=0.97 Score=41.86 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCEEEEEec---cCChhhhhhhhcccCCHHHHHHHhc----CeEEEEEcCCCCccHHHHH
Q 003187 128 EEAFAEARKRDVPIFLSIGY---STCHWCHVMEVESFEDEGVAKLLND----WFVSIKVDREERPDVDKVY 191 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~---~wC~wC~~me~etf~d~eVa~~ln~----~FV~vkvD~ee~pd~~~~y 191 (840)
.|-++..-++++-|+.+=+. +.|++|+...+ +|++ .|.. +|+.+.|++.+..
T Consensus 10 ~e~i~~~i~~~~VvvF~Kgt~~~P~C~fc~~ak~----------lL~~~gv~~~~~--~~v~~~~~~r~~l 68 (118)
T 2wul_A 10 AEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQ----------ILRLHGVRDYAA--YNVLDDPELRQGI 68 (118)
T ss_dssp HHHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHH----------HHHHTTCCSCEE--EETTSCHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEcCCCCCCCCHHHHHHHH----------HHHHhCCcCeEe--ecccCCHHHHHHH
Confidence 56677777777755543343 57999998653 3443 2444 5666667765433
No 334
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=86.03 E-value=16 Score=43.01 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhCCCcccCCCeEEEEecCC--CCC--CCCCcc--------hHHHHHHHHHHHHHHHHccCChHHHHH
Q 003187 337 GQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE--RWH--VPHFEK--------MLYDQGQLANVYLDAFSLTKDVFYSYI 404 (840)
Q Consensus 337 ~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~--~W~--vPHFEK--------MLYDNA~Ll~~ya~Ay~~tgd~~y~~~ 404 (840)
..+.+.+.++-+.. . -..+|||-.|..+. .|. +| |+. -+.+.|..+.++... +.+.+...
T Consensus 396 ~~~~l~~a~~wLls--~-Q~~dGgf~~~~~~~~~~~~~~~~-F~~~~~~~d~~~vd~Ta~vl~aL~~~----g~~~~~~~ 467 (631)
T 2sqc_A 396 RRDAMTKGFRWIVG--M-QSSNGGWGAYDVDNTSDLPNHIP-FSDFGEVTDPPSEDVTAHVLECFGSF----GYDDAWKV 467 (631)
T ss_dssp HHHHHHHHHHHHHH--T-CCTTSCBCSSCSSCCCSGGGGST-TCSSSCSSCCCBHHHHHHHHHHHHTT----TCCTTSHH
T ss_pred hHHHHHHHHHHHHh--h-cCCCCCCCccCCCCccccccccc-cccCCcccCCCCchHHHHHHHHHHhc----CCCccHHH
Confidence 34555566665554 1 12358885444332 221 23 321 245678888777653 44566778
Q ss_pred HHHHHHHHHHhccCCCCceEe
Q 003187 405 CRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 405 A~~t~~fl~r~m~~~~Ggfys 425 (840)
++++++||.+ ++.++||||.
T Consensus 468 i~rai~~L~~-~Q~~DGsw~g 487 (631)
T 2sqc_A 468 IRRAVEYLKR-EQKPDGSWFG 487 (631)
T ss_dssp HHHHHHHHHH-HCCTTSCCCC
T ss_pred HHHHHHHHHH-hcCCCCCCCC
Confidence 8999999987 6788999864
No 335
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=83.60 E-value=33 Score=40.19 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCC------CeEEEEecCCCCC----CCCCcch--------HHHHHHHHHHHHHHHHc
Q 003187 334 ASEGQKMVLFTLQCMAKGGIHDHVG------GGFHRYSVDERWH----VPHFEKM--------LYDQGQLANVYLDAFSL 395 (840)
Q Consensus 334 ~~~~~~~a~~TL~~Ma~GGi~D~v~------GGF~RYsvD~~W~----vPHFEKM--------LYDNA~Ll~~ya~Ay~~ 395 (840)
-+++++.+..-++-|.+ .++..+ |+.+--.+|..|- .|.-..+ ----+..+.+++.|+++
T Consensus 226 ~~d~ldeikwg~D~llk--~q~~~g~~~~~~g~v~~~~~D~~w~g~~~~Pe~~~~~R~~~~p~t~~~~~~AAalAaas~v 303 (609)
T 1ut9_A 226 YPDILDEARWEIEFFKK--MQVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPVSTAATLNFAATLAQSARL 303 (609)
T ss_dssp SCHHHHHHHHHHHHHHH--HBCCTTTCGGGTTCEECEEEESSCCCSSCCGGGCCSBEEECCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hccCCCCcceEEEEecCCCCCcccCCCCCChhhCCCceeecCCCcHHHHHHHHHHHHHHHh
Confidence 35788888888888776 443322 5555456677784 3432211 11245678889999999
Q ss_pred cCC--h----HHHHHHHHHHHHHHHh
Q 003187 396 TKD--V----FYSYICRDILDYLRRD 415 (840)
Q Consensus 396 tgd--~----~y~~~A~~t~~fl~r~ 415 (840)
+++ + .+++.|++..+|..+.
T Consensus 304 fk~~d~~ya~~~L~~A~~~~~fa~~~ 329 (609)
T 1ut9_A 304 WKDYDPTFAADCLEKAEIAWQAALKH 329 (609)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 864 4 4678889999998873
No 336
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=83.10 E-value=0.79 Score=45.16 Aligned_cols=40 Identities=13% Similarity=0.026 Sum_probs=29.4
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e 182 (840)
+||++|.|+..||++|+.++. ++ +++.+.+ +.+.+++.+.
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~-~~--~~~~~~~--~v~~~~~p~~ 61 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMEN-FL--PVISQEA--GTDIGKMHIT 61 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGG-GH--HHHHHHH--TSCCEEEECC
T ss_pred CCCEEEEEECCCChhHHHhhH-HH--HHHHHHh--CCeEEEEecc
Confidence 799999999999999999985 33 4666655 3444455544
No 337
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=82.47 E-value=5.9 Score=40.32 Aligned_cols=29 Identities=14% Similarity=0.384 Sum_probs=21.5
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHH
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVA 167 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa 167 (840)
..|..++.|.-..|++|+.++.+++ +++.
T Consensus 38 ~A~vtIvef~Dy~CP~C~~~~~~~~--~~l~ 66 (226)
T 3f4s_A 38 KAPILMIEYASLTCYHCSLFHRNVF--PKIK 66 (226)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHTH--HHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHH--HHHH
Confidence 3455677889999999999987543 4554
No 338
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}
Probab=81.06 E-value=1.3 Score=48.82 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCe--EE-EEEcC-CCCccHHHHHHHHHHHhcCCCC
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWF--VS-IKVDR-EERPDVDKVYMTYVQALYGGGG 203 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~F--V~-vkvD~-ee~pd~~~~y~~~~~~~~g~~G 203 (840)
.+.++++.++++ |.| |+.+||++|+...+..++...| .| |. +.+|. ++.++ +++.++..+|...
T Consensus 251 ~~~V~~lI~~~~-VvV-Ysk~~CPyC~~Ak~~LL~~~gV------~y~eidVlEld~~~~~~e----~~~~L~~~tG~~T 318 (362)
T 2jad_A 251 IKHVKDLIAENE-IFV-ASKTYCPYSHAALNTLFEKLKV------PRSKVLVLQLNDMKEGAD----IQAALYEINGQRT 318 (362)
T ss_dssp HHHHHHHHHTCS-EEE-EECTTCHHHHHHHHHHHTTTCC------CTTTEEEEEGGGSTTHHH----HHHHHHHHHCCCS
T ss_pred HHHHHHHhccCC-EEE-EEcCCCcchHHHHHHHHHHcCC------CcceEEEEEeccccCCHH----HHHHHHHHHCCCC
Confidence 445566666655 444 6789999999865423333221 22 22 23332 22223 3344445568888
Q ss_pred CCcEEEECCCCceec
Q 003187 204 WPLSVFLSPDLKPLM 218 (840)
Q Consensus 204 ~P~~vfl~p~g~~~~ 218 (840)
+|..+ + +|+.|.
T Consensus 319 VPqVF-I--~Gk~IG 330 (362)
T 2jad_A 319 VPNIY-I--NGKHIG 330 (362)
T ss_dssp SCEEE-E--TTEEEE
T ss_pred cCEEE-E--CCEEEE
Confidence 99764 4 466553
No 339
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=79.16 E-value=57 Score=36.89 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEeecCC--------CCC-----CCC--------CcchHHHHHHHHHHHHHHc
Q 003187 572 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG--------PSK-----APG--------FLDDYAFLISGLLDLYEFG 630 (840)
Q Consensus 572 ~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g--------~~~-----~~~--------~leDyA~~i~aLl~LYeaT 630 (840)
.++.|+.++-.++||++. ++..|.+++...+| .+. .+. -.+--+.++.+|...+.+.
T Consensus 111 ~~d~ldeikwg~D~llk~--~~~~~~~y~qVgd~~~Dh~~W~~pe~~~~~R~~y~i~~~~pgsd~a~e~AAAlAaAS~vf 188 (466)
T 2xfg_A 111 YNHILNNIKWACDYFIKC--HPEKDVYYYQVGDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIF 188 (466)
T ss_dssp HHHHHHHHHHHHHHHHHT--CSBTTEEEEEESCHHHHHTCCSCGGGCCSCCCEEEEESSSCCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHh--ccCCCcEEEEeCCCCccccccCCcccCCCCCceeEecCCCCccHHHHHHHHHHHHHHHhc
Confidence 378999999999999987 34568888876552 110 011 1222345565666666665
Q ss_pred C--C----HHHHHHHHHHHHHHHHHccc---ccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 003187 631 S--G----TKWLVWAIELQNTQDELFLD---REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 701 (840)
Q Consensus 631 g--d----~~yL~~A~~L~~~~~~~F~D---~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~ 701 (840)
. | .+.|+.|+++++.++++--. ...++||.+- -+-.-.++++-..|+..||+
T Consensus 189 k~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~~~~~~~Y~s~------------------s~~~DEl~WAAawLy~ATgd- 249 (466)
T 2xfg_A 189 KKVDGEYSKECLKHAKELFEFADTTKSDDGYTAANGFYNSW------------------SGFYDELSWAAVWLYLATND- 249 (466)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHCCCTTCCTTTTTSCCS------------------SCSHHHHHHHHHHHHHHHCC-
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhcCCcCCCCccccccCCC------------------CCCchHHHHHHHHHHHHhCC-
Confidence 4 4 45688888888888765310 1112233220 01224577778889999996
Q ss_pred CchHHHHHHHHH
Q 003187 702 KSDYYRQNAEHS 713 (840)
Q Consensus 702 ~~~~y~~~A~~~ 713 (840)
..|++.++..
T Consensus 250 --~~Yl~~a~~~ 259 (466)
T 2xfg_A 250 --SSYLDKAESY 259 (466)
T ss_dssp --HHHHHHHHHT
T ss_pred --HHHHHHHHHH
Confidence 7899988764
No 340
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=77.43 E-value=7.2 Score=39.20 Aligned_cols=77 Identities=14% Similarity=0.005 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCCEE-EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC--CccHHHHHHHHHHHhcCCC--
Q 003187 128 EEAFAEARKRDVPIF-LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGG-- 202 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~-l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee--~pd~~~~y~~~~~~~~g~~-- 202 (840)
.+.+.+--..+.|+. |.|...||.-|..+.. .| .+||+....++..+.+|.++ .+.+.+. .|..
T Consensus 120 ~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~-~~--~~vAk~~k~~i~F~~vd~~~~~~~~~l~~--------fgl~~~ 188 (227)
T 4f9z_D 120 PVTVIGLFNSVIQIHLLLIMNKASPEYEENMH-RY--QKAAKLFQGKILFILVDSGMKENGKVISF--------FKLKES 188 (227)
T ss_dssp HHHHHHHHHSSCCEEEEEEECTTSTTHHHHHH-HH--HHHHHHTTTTCEEEEEETTSGGGHHHHHH--------TTCCGG
T ss_pred cccHHHHhccCCceEEEEEEcCCcchHHHHHH-HH--HHHHHHhhCCEEEEEeCCccHhHHHHHHH--------cCCCcc
Confidence 344444445666655 4566779999987654 44 45788777778888899864 2222222 2665
Q ss_pred CCCcEEEECCCCc
Q 003187 203 GWPLSVFLSPDLK 215 (840)
Q Consensus 203 G~P~~vfl~p~g~ 215 (840)
++|+.++++..+.
T Consensus 189 ~~P~~~i~~~~~~ 201 (227)
T 4f9z_D 189 QLPALAIYQTLDD 201 (227)
T ss_dssp GCSEEEEEESSSC
T ss_pred cCCEEEEEECCCC
Confidence 8999999997643
No 341
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*
Probab=76.06 E-value=44 Score=39.19 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCC--------CCCC-----CCC--------cchHHHHHHHHHHHHHHcC
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG--------PSKA-----PGF--------LDDYAFLISGLLDLYEFGS 631 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g--------~~~~-----~~~--------leDyA~~i~aLl~LYeaTg 631 (840)
++.|+.++-.++||++. ++..|.|+....+| .+.. +.+ .+--+.++.+|...+.+..
T Consensus 91 ~d~ldeikwg~Dyllk~--~~~~~~~y~qVGdg~~DH~~w~~pe~~~~~r~~y~v~~~~pgsd~a~e~AAAlAaAS~vfk 168 (614)
T 1g87_A 91 KYIMDGIKWANDYFIKC--NPTPGVYYYQVGDGGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFK 168 (614)
T ss_dssp HHHHHHHHHHHHHHHHT--CCSTTCEEEEESCHHHHHTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh--ccCCCcEEEEecCCCcCccccCCcccCCCCCcceEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999987 34567788765442 1100 111 1222445555555555543
Q ss_pred --C----HHHHHHHHHHHHHHHHHccc---ccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCC
Q 003187 632 --G----TKWLVWAIELQNTQDELFLD---REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSK 702 (840)
Q Consensus 632 --d----~~yL~~A~~L~~~~~~~F~D---~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~ 702 (840)
| .+.|+.|+++++.+.++--. ...++||.+. +-.-.++++-..|+..||+
T Consensus 169 ~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~~~~~~~Y~ss-------------------~~~DEl~WAAawLy~ATgd-- 227 (614)
T 1g87_A 169 SSDPTYAEKCISHAKNLFDMADKAKSDAGYTAASGYYSSS-------------------SFYDDLSWAAVWLYLATND-- 227 (614)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCCCTTCCTTTTTSCCS-------------------CSHHHHHHHHHHHHHHHCC--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCC-------------------CchhHHHHHHHHHHHHhCC--
Confidence 4 45688888888888775311 0112233221 1224677788889999996
Q ss_pred chHHHHHHHHH
Q 003187 703 SDYYRQNAEHS 713 (840)
Q Consensus 703 ~~~y~~~A~~~ 713 (840)
..|++.++..
T Consensus 228 -~~Yl~~a~~~ 237 (614)
T 1g87_A 228 -STYLDKAESY 237 (614)
T ss_dssp -HHHHHHHHHT
T ss_pred -HHHHHHHHHH
Confidence 7899988764
No 342
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=74.80 E-value=18 Score=43.16 Aligned_cols=111 Identities=8% Similarity=0.079 Sum_probs=71.1
Q ss_pred hhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe--------ecCCCC
Q 003187 536 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--------FRNGPS 607 (840)
Q Consensus 536 ltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~--------~~~g~~ 607 (840)
+.++..+.+.++.+.++.+||... .++.....++.++|+.++. ++ +|.+... |.++..
T Consensus 382 ~~d~~l~wi~~~~~yy~~tGD~~~------------L~e~~p~l~~~ld~~~~~~-d~-~GL~~~~~G~W~~~dW~d~~~ 447 (739)
T 3cih_A 382 IMDYTFYWFLSVYDYYMYSGDRHF------------VNQLYPRMQTMMDYVLGRT-NK-NGMVEGMSGDWVFVDWADGYL 447 (739)
T ss_dssp BHHHHHHHHHHHHHHHHHHCCHHH------------HHHHHHHHHHHHHHHHTTB-CT-TSCBCCCTTCBCCSCCCTTCC
T ss_pred ccchhHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHHhc-CC-CCCcccCCCCcccCCCccccc
Confidence 456778888999999999998321 1455677788888887764 32 4432210 111101
Q ss_pred CCCC-CcchHHHHHHHH---HHHHHHcCCH----HHHHHHHHHHHHHHHHcccccCCcccc
Q 003187 608 KAPG-FLDDYAFLISGL---LDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 660 (840)
Q Consensus 608 ~~~~-~leDyA~~i~aL---l~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 660 (840)
...+ ..+..+++..++ .++.++.|++ +|.+.|.+|-+.+.++|||++.|.|++
T Consensus 448 ~~~G~~~~~~a~~y~al~~~a~lA~~lG~~~~A~~y~~~A~~lk~a~~~~~wd~~~G~y~~ 508 (739)
T 3cih_A 448 DKKGELSFEQVLFCRSLETMALCADLVGDKDGQQKYEKLASALKAKLEPTFWNNQKQAFVH 508 (739)
T ss_dssp CCSSEEHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHEETTTTEECS
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCcccCeeEe
Confidence 1112 233455555444 5566677874 588999999999999999988776664
No 343
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=74.51 E-value=2.8 Score=45.47 Aligned_cols=47 Identities=9% Similarity=-0.032 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceEeeccCC
Q 003187 382 QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDAD 430 (840)
Q Consensus 382 NA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DAD 430 (840)
-|..+.+++++|..++++.|++.+++.++||+. |+.++||+- +.|.|
T Consensus 76 Ta~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~-mQ~~nGGWp-qFdpd 122 (332)
T 1gxm_A 76 TITEMVFLAEVYKSGGNTKYRDAVRKAANFLVN-SQYSTGALP-QFYPL 122 (332)
T ss_dssp THHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HCCTTSCCB-SEESC
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHh-ccCCCCCcc-ccCCC
Confidence 578888899999999999999999999999997 999999974 34443
No 344
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=72.51 E-value=6.3 Score=45.68 Aligned_cols=76 Identities=11% Similarity=0.101 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+.+++..++++-++ |+.+||++|+...+ . .+.++-.|..|.||.++. +..+.+.++..+|...+|..
T Consensus 8 ~~~v~~~i~~~~v~v--y~~~~Cp~C~~~k~-~------L~~~~i~~~~~dv~~~~~---~~~~~~~l~~~~g~~tvP~v 75 (598)
T 2x8g_A 8 SQWLRKTVDSAAVIL--FSKTTCPYCKKVKD-V------LAEAKIKHATIELDQLSN---GSAIQKCLASFSKIETVPQM 75 (598)
T ss_dssp HHHHHHHHHHCSEEE--EECTTCHHHHHHHH-H------HHHTTCCCEEEEGGGSTT---HHHHHHHTHHHHSCCCSCEE
T ss_pred HHHHHHHhccCCEEE--EECCCChhHHHHHH-H------HHHCCCCcEEEEcccCcc---hHHHHHHHHHHhCCceeCEE
Confidence 356677766666333 88899999997653 1 122333566666655432 12233344444688899986
Q ss_pred EEECCCCceec
Q 003187 208 VFLSPDLKPLM 218 (840)
Q Consensus 208 vfl~p~g~~~~ 218 (840)
+ + +|+.+.
T Consensus 76 ~-i--~g~~ig 83 (598)
T 2x8g_A 76 F-V--RGKFIG 83 (598)
T ss_dssp E-E--TTEEEE
T ss_pred E-E--CCEEEE
Confidence 4 3 455543
No 345
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Probab=72.48 E-value=36 Score=39.91 Aligned_cols=125 Identities=12% Similarity=-0.034 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHhc---cccCCCeEEEeecCC--------CCC---CCC----------CcchHHHHHHHHHHHH
Q 003187 572 RKEYMEVAESAASFIRRHL---YDEQTHRLQHSFRNG--------PSK---APG----------FLDDYAFLISGLLDLY 627 (840)
Q Consensus 572 ~~~yle~A~~~~~fl~~~l---~d~~~G~l~~~~~~g--------~~~---~~~----------~leDyA~~i~aLl~LY 627 (840)
.++.|+.++-..+||++-- .++..|.+++...+| .|. ..+ -.+--+.++.+|...+
T Consensus 151 ~~d~ldeikwg~Dyllkmq~~~~~~~~g~~y~qVgdg~~Dh~~w~~Pe~~~~~R~~y~v~~~~pgsd~a~~~AAAlAaAS 230 (611)
T 2yik_A 151 AVHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLAINY 230 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTEEECTTSCEEEEEEEESCHHHHTTCCSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcccccccCCCCcEEEEeCCCCccccCCCChhhCCCCCcceeecCCCCccHHHHHHHHHHHHHH
Confidence 3789999999999999842 144457888876542 110 001 0111244555555555
Q ss_pred HHcC--C----HHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 003187 628 EFGS--G----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 701 (840)
Q Consensus 628 eaTg--d----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~ 701 (840)
.+.. | .++|+.|+++++.+.++ .|.|...... ....|.. -+-.-.++++-..|+..||+
T Consensus 231 ~vfk~~D~~yA~~~L~~Ak~~~~fA~~~-----~~~y~~~~~~-------~~~~Y~s--s~~~DEl~WAAawLy~ATgd- 295 (611)
T 2yik_A 231 MNFKDTDPQYAAKSLDYAKALFDFAEKN-----PKGVVQGEDG-------PKGYYGS--SKWQDDYCWAAAWLYLATQN- 295 (611)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHHS-----CCCCCCGGGT-------TTTTSCC--CCSHHHHHHHHHHHHHHHCC-
T ss_pred HhccccCHHHHHHHHHHHHHHHHHHHHc-----CCcccCCCcc-------cCcCCCC--CCcccHHHHHHHHHHHHhCC-
Confidence 5543 4 45678888888877653 1223111000 0011111 11234677888889999986
Q ss_pred CchHHHHHHHHH
Q 003187 702 KSDYYRQNAEHS 713 (840)
Q Consensus 702 ~~~~y~~~A~~~ 713 (840)
..|++.+++.
T Consensus 296 --~~Yl~~a~~~ 305 (611)
T 2yik_A 296 --EHYLDEAFKY 305 (611)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 7899988764
No 346
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=72.12 E-value=8.5 Score=41.76 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCCCC-C--CcchH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP-G--FLDDY 616 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~-~~~g~~~~~-~--~leDy 616 (840)
-.+++||..|++.-++ ++|.+.|+++++-|+++...+..|.+.-. ...|-.... - .++++
T Consensus 109 l~IA~ALl~A~~~Wg~----------------~~Y~~~A~~il~~i~~~~v~~~~g~~~llPg~~gf~~~~~~~~npSY~ 172 (334)
T 1wzz_A 109 LLIALALGRAGKRFQR----------------PDYIQDAMAIYGDVLNLMTMKAGPYVVLMPGAVGFTKKDSVILNLSYY 172 (334)
T ss_dssp HHHHHHHHHHHHHHTC----------------HHHHHHHHHHHHHHHHHHEEEETTEEEECSCSSSCBCSSEEEECGGGC
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhcccCCCCeEEECCCcccccCCCCCeechhhc
Confidence 6789999999999987 78999999999999888766444543211 111111100 1 12222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCC
Q 003187 617 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 656 (840)
Q Consensus 617 A~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~G 656 (840)
+..++-.+++.+++..|.+.+..-.+.+.+... +..|
T Consensus 173 --~p~~~~~fa~~~~~~~W~~~~~~~~~ll~~~~~-~~tG 209 (334)
T 1wzz_A 173 --VMPSLLQAFDLTADPRWRQVMEDGIRLVSAGRF-GQWR 209 (334)
T ss_dssp --CHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCB-TTTT
T ss_pred --CHHHHHHHHHccCCchHHHHHHHHHHHHHHccc-CCCC
Confidence 225566677889999999999888888766543 4444
No 347
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=70.79 E-value=1.1e+02 Score=36.63 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeE
Q 003187 573 KEYMEVAESAASFIRRHLYDEQTHRL 598 (840)
Q Consensus 573 ~~yle~A~~~~~fl~~~l~d~~~G~l 598 (840)
++|.+.|.++.+.+.+++|+++.+.+
T Consensus 529 ~~~~~~A~~lk~~~~~~~w~~~~~~f 554 (807)
T 1v7w_A 529 NTYTEMAANVREACETHLWDDEGGWY 554 (807)
T ss_dssp HHHHHHHHHHHHHHHHHSEETTTTEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCee
Confidence 57999999999999999999764444
No 348
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=67.87 E-value=25 Score=43.44 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=71.6
Q ss_pred hhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE---eec---CCC-C
Q 003187 535 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH---SFR---NGP-S 607 (840)
Q Consensus 535 iltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~---~~~---~g~-~ 607 (840)
.+.+|..+.+.++.+.++.+||... .++.....++.++|+.++. ++ +|.+.. .+. +.. +
T Consensus 625 ~~~~~~~~~i~~~~~yy~~tGD~~~------------L~e~yp~lk~~l~~~~~~~-d~-~GLl~~~~~~~~DW~d~~~~ 690 (956)
T 2okx_A 625 VIPNWTFFWILACREYAAHTGNEAF------------AARIWPAVKHTLTHYLEHI-DD-SGLLNMAGWNLLDWAPIDQP 690 (956)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHTTB-CT-TSSBCCSSCCCCCSSSCCCC
T ss_pred CCcChHHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHhcC-CC-CCCEEeCCCCccCccCCCCC
Confidence 3456888889999999999998321 1345567778888888754 43 443321 111 100 0
Q ss_pred CCCCCcchHHHHHHH---HHHHHHHcCCH----HHHHHHHHHHHHHHHHcccccCCccccC
Q 003187 608 KAPGFLDDYAFLISG---LLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNT 661 (840)
Q Consensus 608 ~~~~~leDyA~~i~a---Ll~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 661 (840)
.......+.+++..+ +.++.++.|++ +|.+.|.+|.+.+.++|||++.|.|.+.
T Consensus 691 ~~G~~~~~~a~~~~al~~~a~lA~~LG~~~~a~~y~~~A~~lk~ai~~~~wd~~~g~y~d~ 751 (956)
T 2okx_A 691 NEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVLWDEEKRAYIDC 751 (956)
T ss_dssp SSSEEHHHHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHHHHSEETTTTEECSE
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEee
Confidence 111123455555444 45566666763 5899999999999999999876655543
No 349
>1v5d_A Chitosanase; chitosan degradation, hydrolase, glycosil hydrolase, family 8; HET: PIN; 1.50A {Bacillus SP} SCOP: a.102.1.2 PDB: 1v5c_A*
Probab=67.36 E-value=27 Score=38.52 Aligned_cols=129 Identities=8% Similarity=-0.059 Sum_probs=79.4
Q ss_pred HHHHHHHHHhccccCCCeEEEeecC-CCC--CCCCCcchHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcccc
Q 003187 580 ESAASFIRRHLYDEQTHRLQHSFRN-GPS--KAPGFLDDYAFLISGLLDLYEFGSGT---KWLVWAIELQNTQDELFLDR 653 (840)
Q Consensus 580 ~~~~~fl~~~l~d~~~G~l~~~~~~-g~~--~~~~~leDyA~~i~aLl~LYeaTgd~---~yL~~A~~L~~~~~~~F~D~ 653 (840)
.++..|.++|+....+|.+-|.+.. |.. +...=.++=-+++.||+...+..++. .|++.|++|++.+.++-...
T Consensus 98 D~l~~wt~~~l~~~~~~L~aW~~~~~g~~~~d~n~AtDgDl~IA~ALl~A~~~Wg~~g~~~Y~~~A~~il~~i~~~~~~~ 177 (386)
T 1v5d_A 98 DGLFKTARTFKSSQNPNLMGWVVADSKKAQGHFDSATDGDLDIAYSLLLAHKQWGSNGTVNYLKEAQDMITKGIKASNVT 177 (386)
T ss_dssp HHHHHHHHHTBCSSCTTSBCSEECSSGGGTTTSCCCHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHTHHHHHBC
T ss_pred HHHHHHHHHHhccCCCCCeEEEECCCCCcCCCCCCCCHHHHHHHHHHHHHHHHcCCCchHhHHHHHHHHHHHHHHhcccC
Confidence 3677788888875556766666532 221 22233455678999999999999998 89999999999887775543
Q ss_pred cCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003187 654 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 654 ~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i 721 (840)
.++..-..+. .+ ...+..-||= .+...|-.+++++++ ..|.+.++..++.+....
T Consensus 178 ~~~~l~~g~~------~~--~~~~~~npSY--~~p~~l~~f~~~~~~---~~W~~v~~~~~~~l~~~~ 232 (386)
T 1v5d_A 178 NNNQLNLGDW------DS--KSSLDTRPSD--WMMSHLRAFYEFTGD---KTWLTVINNLYDVYTQFS 232 (386)
T ss_dssp TTSSBCSSTT------SC--TTCCCBCGGG--CCHHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred CCCeeeeccc------CC--CCCCeechhh--ccHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHH
Confidence 3322111111 00 1111222331 334456777888875 568888877776655443
No 350
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=67.18 E-value=4.8 Score=44.82 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHc-c--CChHHHHHHHHHHHHHHHhccCCCCceE
Q 003187 382 QGQLANVYLDAFSL-T--KDVFYSYICRDILDYLRRDMIGPGGEIF 424 (840)
Q Consensus 382 NA~Ll~~ya~Ay~~-t--gd~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (840)
-|..+.+++++|+. + +++.|++.+++.++||+. |+.++||+-
T Consensus 151 Ta~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~-mQ~~nGGWp 195 (408)
T 1r76_A 151 TVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLA-SQFPNGGWP 195 (408)
T ss_dssp THHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHH-HSCTTSCCB
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH-ccCCCCCCc
Confidence 46788889999998 7 899999999999999997 999999974
No 351
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=65.43 E-value=30 Score=38.07 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=34.3
Q ss_pred HHHHH---HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE
Q 003187 539 WNGLV---ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ 599 (840)
Q Consensus 539 WNal~---I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~ 599 (840)
-|+++ ...+++.++++|+. ..+|.+.|.++.+.+.+ +|+++.|.++
T Consensus 237 lna~~~~~~~~la~la~~lg~~--------------a~~~~~~a~~~~~ai~~-~Wd~~~g~~~ 285 (420)
T 2z07_A 237 FNAILQRANRDLYALAVLLQED--------------PYEIEEWIVRGEVGLEA-LWDREAGFYF 285 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHHHHHH-TEETTTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCcc--------------HHHHHHHHHHHHHHHHH-hhCcccCeeE
Confidence 35555 44666667777652 27899999999999999 9998777664
No 352
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=65.41 E-value=6.5 Score=37.91 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=29.1
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcC
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDR 181 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ 181 (840)
..++++|.|+..+|+||..++...+ +++.+.... .|+++-++.
T Consensus 16 ~~~~~~ief~d~~CP~C~~~~~~l~--~~l~~~~~~~v~~~~~~l~~ 60 (195)
T 3c7m_A 16 NADKTLIKVFSYACPFCYKYDKAVT--GPVSEKVKDIVAFTPFHLET 60 (195)
T ss_dssp SCTTEEEEEECTTCHHHHHHHHHTH--HHHHHHTTTTCEEEEEECTT
T ss_pred CCCcEEEEEEeCcCcchhhCcHHHH--HHHHHhCCCceEEEEEecCc
Confidence 4677889999999999999987432 455554433 355555443
No 353
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=64.73 E-value=9.7 Score=35.30 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=28.2
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHH
Q 003187 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDK 189 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~ 189 (840)
++-+++++|++|++.++ -..+..+|+.+ .-...+|++..|+...
T Consensus 2 V~vYtt~~c~~c~~kk~----c~~aK~lL~~kgV~feEidI~~d~~~r~ 46 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKK----QQDVLGFLEANKIGFEEKDIAANEENRK 46 (121)
T ss_dssp EEEEECTTCSCHHHHHH----HHHHHHHHHHTTCCEEEEECTTCHHHHH
T ss_pred EEEEecCCCCCccchHH----HHHHHHHHHHCCCceEEEECCCCHHHHH
Confidence 34467999999987664 34567788763 3344567765565443
No 354
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=62.64 E-value=50 Score=39.52 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--C----------CeEEEeecCCCC
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--T----------HRLQHSFRNGPS 607 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~--~----------G~l~~~~~~g~~ 607 (840)
.++++.||.+++. ..+ +++.+..+++.+||++...... + |++-..+.+
T Consensus 389 Talal~AL~~ag~-~~~----------------~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~--- 448 (732)
T 1w6k_A 389 TAFAIQALLEAGG-HHR----------------PEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLD--- 448 (732)
T ss_dssp HHHHHHHHHHTTG-GGC----------------GGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTT---
T ss_pred HHHHHHHHHHcCC-Ccc----------------hhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCC---
Confidence 3889999999863 222 4677889999999988754321 1 333111111
Q ss_pred CCCCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcccccCCcc
Q 003187 608 KAPGFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQNTQDELFLDREGGGY 658 (840)
Q Consensus 608 ~~~~~leDyA~~i~aLl~LYeaTg---d~~yL~~A~~L~~~~~~~F~D~~~Ggy 658 (840)
......++-|+++.+|..+....+ +....+...+..+.+... ..+ +|+|
T Consensus 449 ~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~-Q~~-DGgw 500 (732)
T 1w6k_A 449 CGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNM-RNP-DGGF 500 (732)
T ss_dssp TCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTT-CCT-TSCB
T ss_pred CCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHh-cCC-CCCE
Confidence 122456778999999999987753 233333444444555543 233 4666
No 355
>1wu4_A Xylanase Y; (alpla/alpha)6 barrel, glycoside hydrolase family 8, hydrola; 1.35A {Bacillus halodurans} SCOP: a.102.1.2 PDB: 1wu5_A* 3a3v_A 2drr_A 2drs_A 1wu6_A* 2drq_A 2dro_A
Probab=62.57 E-value=66 Score=35.58 Aligned_cols=130 Identities=10% Similarity=0.013 Sum_probs=81.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHh-----h-------hcCCCC-CCCcchhhhcHHHH-HHHHHHHHHHHhhhhhhhhcc
Q 003187 498 ASKLGMPLEKYLNILGECRRKLFD-----V-------RSKRPR-PHLDDKVIVSWNGL-VISSFARASKILKSEAESAMF 563 (840)
Q Consensus 498 a~~~g~~~e~l~~~l~~~r~kL~~-----~-------R~~R~~-P~~DdKiltsWNal-~I~ALa~A~~~~~d~~~~~~~ 563 (840)
.++.|.+.+++.++|+++-+.++. . -..|+. +. +..|.+--.|+ |+-|+.. +|
T Consensus 18 ~~~~g~~~~~~~~~~~~~~~~wf~g~~~k~~y~~~~~~~GrviD~~-n~~v~SEGqgYGMl~Av~~-----~d------- 84 (396)
T 1wu4_A 18 FKEFGYSEAEIQERVKDTWEQLFGDNPETKIYYEVGDDLGYLLDTG-NLDVRTEGMSYGMMMAVQM-----DR------- 84 (396)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHSSCC--CCEEEETTTEEEECBTT-TTBEEHHHHHHHHHHHHHT-----TC-------
T ss_pred hhhcCCCHHHHHHHHHHHHHHHhcCCcchheeEecCCCCeEEEECC-CCCcccHHHHHHHHHHHHc-----CC-------
Confidence 345788999999999998888851 1 012221 11 12223444443 2222221 22
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHhccccC---CCeEEEeec-CCCC-CCCCCcchHHHHHHHHHHHHHHcC-----CH
Q 003187 564 NFPVVGSDRKEYMEVAESAASFIRRHLYDEQ---THRLQHSFR-NGPS-KAPGFLDDYAFLISGLLDLYEFGS-----GT 633 (840)
Q Consensus 564 ~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~---~G~l~~~~~-~g~~-~~~~~leDyA~~i~aLl~LYeaTg-----d~ 633 (840)
+ +.=.++..|.+.+|..++ +|.+-|.+. +|.. ....=.++=-+++.||+.+.+..+ +.
T Consensus 85 ---------~---~~FD~l~~wt~~~l~~~~~~~~~L~aW~~~~~~~~~~~n~AtDgDl~IA~ALl~A~~~Wg~~~g~~~ 152 (396)
T 1wu4_A 85 ---------K---DIFDRIWNWTMKNMYMTEGVHAGYFAWSCQPDGTKNSWGPAPDGEEYFALALFFASHRWGDGDEQPF 152 (396)
T ss_dssp ---------H---HHHHHHHHHHHHHTBCCSSTTTTSBCSEECTTSCBSCSCCCHHHHHHHHHHHHHHHHHHCCCSSTTC
T ss_pred ---------H---HHHHHHHHHHHHHhccCCcccCCCceEEECCCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCcH
Confidence 1 122467888888886655 566666664 3322 123334555789999999999999 68
Q ss_pred HHHHHHHHHHHHHHHHccc
Q 003187 634 KWLVWAIELQNTQDELFLD 652 (840)
Q Consensus 634 ~yL~~A~~L~~~~~~~F~D 652 (840)
.|++.|++|++.+.++=..
T Consensus 153 ~Y~~~A~~il~~i~~~~~~ 171 (396)
T 1wu4_A 153 NYSEQARKLLHTCVHNGEG 171 (396)
T ss_dssp CHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999998877544
No 356
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=62.32 E-value=4.2 Score=40.17 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcC
Q 003187 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDR 181 (840)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ 181 (840)
+||.++.|...+|++|+.++...---+++.+.+.+ .|+.+.++.
T Consensus 21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~ 66 (191)
T 3l9s_A 21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEF 66 (191)
T ss_dssp SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSS
T ss_pred CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEeccc
Confidence 48999999999999999998632113677776644 466555554
No 357
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=61.64 E-value=38 Score=40.66 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC---CCCC-CCCCcchH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN---GPSK-APGFLDDY 616 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~---g~~~-~~~~leDy 616 (840)
.++++++.+.++.+||...=++- -|..........+..++..+|+..++ ++ +|.+.....+ +-.. .....+-.
T Consensus 429 lw~~~~~~~y~~~tGD~~~L~e~-~p~~~~~~~~v~e~~~~~~~~~~~~~-~~-~GL~~~~~~DW~D~~~~~~g~~v~~~ 505 (807)
T 1v7w_A 429 LWLIPTICKYVMETGETSFFDQM-IPYADGGEASVYEHMKAALDFSAEYV-GQ-TGICKGLRADWNDCLNLGGGESSMVS 505 (807)
T ss_dssp GGHHHHHHHHHHHHCCGGGGGCE-EECTTSCEEEHHHHHHHHHHHHHHSB-CT-TSCBEEETCSSSTTCCCEEEEEHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHhcc-cccccCCcchHHHHHHHHHHHHHhcC-CC-CCCcccCCCCCCCcCCCCCCeehhHH
Confidence 66888999999999984221100 00000000012346888899988764 43 5654432222 1110 11123344
Q ss_pred HHHHHH---HHHHHHHcCCH----HHHHHHHHHHHHHHHHcccccCC
Q 003187 617 AFLISG---LLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGG 656 (840)
Q Consensus 617 A~~i~a---Ll~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~G 656 (840)
|++..+ +.++.+..|++ +|.+.|.+|.+.+.++|||++++
T Consensus 506 a~~y~al~~~a~la~~lG~~~~a~~~~~~A~~lk~~~~~~~w~~~~~ 552 (807)
T 1v7w_A 506 FLHFWALQEFIDLAKFLGKDQDVNTYTEMAANVREACETHLWDDEGG 552 (807)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 554444 45566667764 68899999999999999997643
No 358
>1v5d_A Chitosanase; chitosan degradation, hydrolase, glycosil hydrolase, family 8; HET: PIN; 1.50A {Bacillus SP} SCOP: a.102.1.2 PDB: 1v5c_A*
Probab=60.44 E-value=11 Score=41.57 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 620 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 620 (840)
-.+++||..|++.-++. | ..+|.+.|+++++-|.++...+.++.+. ..+......-+++.-=++.
T Consensus 138 l~IA~ALl~A~~~Wg~~-----------g--~~~Y~~~A~~il~~i~~~~~~~~~~~l~--~g~~~~~~~~~~npSY~~p 202 (386)
T 1v5d_A 138 LDIAYSLLLAHKQWGSN-----------G--TVNYLKEAQDMITKGIKASNVTNNNQLN--LGDWDSKSSLDTRPSDWMM 202 (386)
T ss_dssp HHHHHHHHHHHHHHCSS-----------S--SSCHHHHHHHHHHHTHHHHHBCTTSSBC--SSTTSCTTCCCBCGGGCCH
T ss_pred HHHHHHHHHHHHHcCCC-----------c--hHhHHHHHHHHHHHHHHhcccCCCCeee--ecccCCCCCCeechhhccH
Confidence 67899999999999861 0 0279999999999998877654444332 1111100111222222334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003187 621 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 649 (840)
Q Consensus 621 ~aLl~LYeaTgd~~yL~~A~~L~~~~~~~ 649 (840)
.+|-.+|+++++..|.+.+..-.+.+.+.
T Consensus 203 ~~l~~f~~~~~~~~W~~v~~~~~~~l~~~ 231 (386)
T 1v5d_A 203 SHLRAFYEFTGDKTWLTVINNLYDVYTQF 231 (386)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 45666788899999999888777776543
No 359
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=60.42 E-value=26 Score=38.52 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=34.7
Q ss_pred HHHHHHH---HHHHHHHcCC--HHHHHHHHHHHHHHHHHcccccCCccccCC
Q 003187 616 YAFLISG---LLDLYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNTT 662 (840)
Q Consensus 616 yA~~i~a---Ll~LYeaTgd--~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 662 (840)
.|++..+ +.++++..|+ .+|.+.|.++.+.+.+ |||++.|.||+..
T Consensus 238 na~~~~~~~~la~la~~lg~~a~~~~~~a~~~~~ai~~-~Wd~~~g~~~d~~ 288 (420)
T 2z07_A 238 NAILQRANRDLYALAVLLQEDPYEIEEWIVRGEVGLEA-LWDREAGFYFSWD 288 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-TEETTTTEECCEE
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH-hhCcccCeeEeee
Confidence 3554444 4456666675 6899999999999999 9999888888654
No 360
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=59.53 E-value=43 Score=38.56 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=54.9
Q ss_pred hcHHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCCCCCC
Q 003187 537 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGF 612 (840)
Q Consensus 537 tsWNal~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~-~~~g~~~~~~~ 612 (840)
++-||++.. .+++.++.+|+... ..+|.+.|.++.+.+.+.||+++.|.++.. ..+|+......
T Consensus 305 VDlnA~ly~a~~~la~lA~~lG~~~~------------a~~~~~~A~~lk~ai~~~fWdee~G~y~D~~~~~~~~~~~~~ 372 (535)
T 2jg0_A 305 VDLNSLMFKMEKILARASKAAGDNAM------------ANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHKVRNQLT 372 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHSEETTTTEECCEETTTTEECCCCB
T ss_pred hHHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhCcCCCCCEEEEEeCCCCCEeeeeh
Confidence 456777766 44566666775211 157999999999999999999887765422 22333211111
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 003187 613 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 652 (840)
Q Consensus 613 leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D 652 (840)
.. +++-|+----++ +.|..+.+.+.+.|+.
T Consensus 373 ~s-------~~~PL~~gi~~~---e~a~~v~~~l~~~l~t 402 (535)
T 2jg0_A 373 AA-------ALFPLYVNAAAK---DRANKMATATKTHLLQ 402 (535)
T ss_dssp GG-------GGHHHHTTCSCH---HHHHHHHHHHHHHTEE
T ss_pred hh-------hHHHHhcCCCCH---HHHHHHHHHHHHHhcc
Confidence 11 122222111122 3577888888778875
No 361
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=59.11 E-value=15 Score=37.01 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=45.0
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g 214 (840)
+...+++.+.|....|..++.... +++....|.|..-.+..+++.+.| |+.++|+.|+++++|
T Consensus 154 ~~~~~~~al~f~~~~~~~~~~~~~---------d~~~~~~i~v~~~~~~~~~l~~~f--------~v~~~Pslvl~~~~g 216 (244)
T 3q6o_A 154 RNNEEYLALIFEXGGSYLAREVAL---------DLSQHKGVAVRRVLNTEANVVRKF--------GVTDFPSCYLLFRNG 216 (244)
T ss_dssp HCCCSEEEEEEECTTCCHHHHHHH---------HTTTCTTEEEEEEETTCHHHHHHH--------TCCCSSEEEEEETTS
T ss_pred cCCCceEEEEEEECCcchHHHHHH---------HhccCCceEEEEEeCchHHHHHHc--------CCCCCCeEEEEeCCC
Confidence 467788888888777655544332 233333344544334456666666 899999999999999
Q ss_pred ceecc
Q 003187 215 KPLMG 219 (840)
Q Consensus 215 ~~~~~ 219 (840)
++...
T Consensus 217 ~~~~~ 221 (244)
T 3q6o_A 217 SVSRV 221 (244)
T ss_dssp CEEEC
T ss_pred CeEee
Confidence 98754
No 362
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=58.01 E-value=12 Score=40.79 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccccCCCeEEEeecCCC-CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 003187 580 ESAASFIRRHLYDEQTHRLQHSFRNGP-SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 652 (840)
Q Consensus 580 ~~~~~fl~~~l~d~~~G~l~~~~~~g~-~~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D 652 (840)
.++.+|.+.++. ++|.+.|.+..+. ...++ ++|=-+.++||+...+..+++.|.+.|.+|.+.+.++-..
T Consensus 82 d~l~~~t~~~l~--~~~L~sWr~~~~~~~~nNA-tdgDl~IA~ALl~A~~~W~~~~Y~~~A~~I~~~i~~~~~~ 152 (350)
T 3ren_A 82 DEHFDIVKEMRL--KNGLISWRKEGDENSPSSA-TIDELRIIKALLLANNRWNSFYYKFYAINIANSLLKHAEE 152 (350)
T ss_dssp HHHHHHHHTTBC--TTSSBCSEEETTEECSCEE-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHhc--cCCceEEEECCCCCCCCCC-cHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHccc
Confidence 467888999998 4677777764432 22233 4455789999999999999999999999999999987554
No 363
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=57.17 E-value=66 Score=38.98 Aligned_cols=116 Identities=11% Similarity=-0.038 Sum_probs=65.9
Q ss_pred CCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC--ChHHHHHHHHHHHHHHHHhccccCCCeEEEe---ec
Q 003187 529 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS--DRKEYMEVAESAASFIRRHLYDEQTHRLQHS---FR 603 (840)
Q Consensus 529 P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~--~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~---~~ 603 (840)
++.|+- ...|.++.+..+.+||...=++ .-|.... ......+..++..+++.+++ ++ +|..... |.
T Consensus 412 ~~~D~~------lW~i~av~~Y~~~TGD~~~L~e-~~p~~~~~~~~~tl~eh~~ra~~~~~~~~-g~-~GL~~~g~~DWn 482 (811)
T 3qde_A 412 NFNDDP------LWLILATAAYIKETGDYSILKE-QVPFNNDPSKADTMFEHLTRSFYHVVNNL-GP-HGLPLIGRADWN 482 (811)
T ss_dssp CBTTHH------HHHHHHHHHHHHHHCCGGGGGS-EEEETTEEEEEEEHHHHHHHHHHHHHTCB-CT-TSSBBCBTCSSS
T ss_pred Ccccch------hHHHHHHHHHHHHHCCHHHHHh-hhhhhcCCcccccHHHHHHHHHHHHHhcC-CC-CCCcccccCCch
Confidence 356765 7789999999999998321000 0000000 00124567788888888765 42 4433211 33
Q ss_pred CCCCC--------C------------CCCcchHH---HHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcccc
Q 003187 604 NGPSK--------A------------PGFLDDYA---FLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDR 653 (840)
Q Consensus 604 ~g~~~--------~------------~~~leDyA---~~i~aLl~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~ 653 (840)
|+-.. . ....+-.+ .++..+.++.+..|++ .|.+.|.+|.+.+.++|||.
T Consensus 483 D~ln~~~~~~~vg~~~~~vtp~~~~~gesv~~~al~y~AL~~~a~lA~~lGd~~~A~~~~~~A~~lk~a~~~~~Wdg 559 (811)
T 3qde_A 483 DCLNLNCFSTVPDESFQTTTSKDGKVAESVMIAGMFVFIGKDYVKLCEYMGLEEEARKAQQHIDAMKEAILKYGYDG 559 (811)
T ss_dssp TTCCSSCCCCCTTSCTTTSCCCCCSSCEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSBCS
T ss_pred hhccccccccccCccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 33211 0 00112223 3445556666777874 58899999999999999973
No 364
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19
Probab=56.75 E-value=20 Score=37.76 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=16.2
Q ss_pred cCCC--EEEEEeccCChhhhhhhh
Q 003187 137 RDVP--IFLSIGYSTCHWCHVMEV 158 (840)
Q Consensus 137 e~Kp--I~l~~g~~wC~wC~~me~ 158 (840)
.++| .+..|+..+|++|...++
T Consensus 39 ~~~~~~~VelyTs~gCp~C~~Ak~ 62 (270)
T 2axo_A 39 QEAVKGVVELFTSQGCASCPPADE 62 (270)
T ss_dssp CSCCCCEEEEEECTTCTTCHHHHH
T ss_pred ccCCCcEEEEEeCCCCCChHHHHH
Confidence 3444 555589999999998654
No 365
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=55.68 E-value=16 Score=41.04 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=63.3
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEEEEe
Q 003187 286 RLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYS 365 (840)
Q Consensus 286 ~~~~~~l~~~~D~~~GGfg~aPKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYs 365 (840)
++.++.+.+......|||+...+- .+..+-+.+.....-+. ..+...++-+...|..|.. -+|||..|
T Consensus 76 ~~hi~~l~~~lq~~~gg~~a~D~~-r~~l~y~~l~aL~lLg~----~~~~~~~~r~v~~l~s~Q~------~dGGf~g~- 143 (437)
T 2h6f_B 76 EKHFHYLKRGLRQLTDAYECLDAS-RPWLCYWILHSLELLDE----PIPQIVATDVCQFLELCQS------PEGGFGGG- 143 (437)
T ss_dssp HHHHHHHHHHTTEECGGGGGGTTC-HHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHBC------TTSSBBSS-
T ss_pred HHHHHHHHHcCCCCCCCcccccCC-CccHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHhCC------CCCCcCCc-
Confidence 556667776655678888875443 23333222222222110 1123445555556666644 46999864
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChH-HHH-HHHHHHHHHHHhccCCCCceEeec
Q 003187 366 VDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVF-YSY-ICRDILDYLRRDMIGPGGEIFSAE 427 (840)
Q Consensus 366 vD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~-y~~-~A~~t~~fl~r~m~~~~Ggfysa~ 427 (840)
.|..+|-. .-...+.+++ +.|... +.+ ..+++++||.+ ++.++|||+...
T Consensus 144 ---~~~~~~i~----~T~~Al~aL~----~lg~~~~~~~i~i~kav~~L~s-~Q~~DGsf~~~~ 195 (437)
T 2h6f_B 144 ---PGQYPHLA----PTYAAVNALC----IIGTEEAYDIINREKLLQYLYS-LKQPDGSFLMHV 195 (437)
T ss_dssp ---TTCCBCHH----HHHHHHHHHH----HHCCHHHHTTSCHHHHHHHHHT-TBCTTSCBBSST
T ss_pred ---cCCCcchh----HHHHHHHHHH----HhCCcccccchHHHHHHHHHHH-hCCCCCCeeecC
Confidence 47777643 2222222222 233321 111 26789999987 788999999643
No 366
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=55.26 E-value=64 Score=39.17 Aligned_cols=116 Identities=12% Similarity=-0.074 Sum_probs=66.8
Q ss_pred CCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC--ChHHHHHHHHHHHHHHHHhccccCCCeEEE---eec
Q 003187 529 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS--DRKEYMEVAESAASFIRRHLYDEQTHRLQH---SFR 603 (840)
Q Consensus 529 P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~--~~~~yle~A~~~~~fl~~~l~d~~~G~l~~---~~~ 603 (840)
++.|+- ...++++.+..+.+||...=++ .-|.... ......+..+++.+++.+++ ++ +|...- .|.
T Consensus 419 ~~~D~~------lWl~~av~~Yi~~TGD~~~L~e-~~p~~~~~~~~~tl~eh~~ra~~~~~~~~-g~-~GLp~~g~gDWn 489 (822)
T 3rrs_A 419 GFNDDP------LWLIAGTAAYIKETGDFSILDE-PVPFDNEPGSEVPLFEHLTRSFEFTVTHR-GP-HGLPLIGRADWN 489 (822)
T ss_dssp CBTTHH------HHHHHHHHHHHHHHCCGGGGGS-EECSTTCTTCCEEHHHHHHHHHHHHHHSB-CT-TSSBBCBTCSSS
T ss_pred cccchH------hHHHHHHHHHHHHHCCHHHHHh-hhhhhccccccccHHHHHHHHHHHHHhcC-CC-CCCcccCCCcch
Confidence 356765 7789999999999998321100 0000000 00124567888899998765 32 443221 133
Q ss_pred CCCCC------C--------C---CC---cchHH---HHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcccc
Q 003187 604 NGPSK------A--------P---GF---LDDYA---FLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDR 653 (840)
Q Consensus 604 ~g~~~------~--------~---~~---leDyA---~~i~aLl~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~ 653 (840)
|+... + + +. .+-.+ .++..+.++.+..|+. .|.+.|.+|.+.+.++|||.
T Consensus 490 D~ln~~~~~~~vg~~~~~~~p~~~~~Gesv~~~al~y~AL~~~a~lA~~~G~~~~A~~~~~~A~~lk~a~~~~~Wdg 566 (822)
T 3rrs_A 490 DCLNLNCFSTTPGESFQTTENQAGGVAESTFIAAQFVLYGEQYAELAARRGLADVADRARGHVAEMRDALLTDGWDG 566 (822)
T ss_dssp TTCCTTCCCCSTTCCTTTCCSSCCCCCEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTBCS
T ss_pred hhcccccccccccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCc
Confidence 43211 0 0 11 12223 3445556677777874 58899999999999999974
No 367
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=52.63 E-value=1.4e+02 Score=32.48 Aligned_cols=124 Identities=12% Similarity=0.107 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccccCCCeEEEeecC-CCC----CCC-CCcchHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHc
Q 003187 580 ESAASFIRRHLYDEQTHRLQHSFRN-GPS----KAP-GFLDDYAFLISGLLDLYEFGSGT---KWLVWAIELQNTQDELF 650 (840)
Q Consensus 580 ~~~~~fl~~~l~d~~~G~l~~~~~~-g~~----~~~-~~leDyA~~i~aLl~LYeaTgd~---~yL~~A~~L~~~~~~~F 650 (840)
.++..|.+.++.+ +|.+-|.+.. |.. +.. .=.++=-.++.||+...+..++. .|++.|++|++.+.++-
T Consensus 82 d~l~~wt~~~~~~--~~l~aW~~~~~g~~~~~~d~~~~AtDgDl~IA~ALl~A~~~W~~~g~~~Y~~~A~~i~~~i~~~~ 159 (363)
T 1kwf_A 82 DDLYRYVKSHFNG--NGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFADKLWGSSGAINYGQEARTLINNLYNHC 159 (363)
T ss_dssp HHHHHHHHTTBCT--TSSBCSEECTTSCBCTTTTTTSCBHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCCeEEEECCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHh
Confidence 4677778888843 5666666532 321 112 23455578999999999999988 89999999999999886
Q ss_pred ccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003187 651 LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 719 (840)
Q Consensus 651 ~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~ 719 (840)
+.+ |.+.-.+.+. ....+..-||= .+...+-.++.++++ ..|.+.++..++.+..
T Consensus 160 ~~~--~~~~l~pg~~-------~~~~~~~npSY--~~p~~~~~fa~~~~~---~~W~~~~~~~~~~l~~ 214 (363)
T 1kwf_A 160 VEH--GSYVLKPGDR-------WGGSSVTNPSY--FAPAWYKVYAQYTGD---TRWNQVADKCYQIVEE 214 (363)
T ss_dssp BCT--TTCCBCSBSS-------SCBTTBBCGGG--CCHHHHHHHHHHHCC---THHHHHHHHHHHHHHH
T ss_pred ccC--CCeEEecccc-------CCCCCEecchh--cCHHHHHHHHHccCC---chHHHHHHHHHHHHHH
Confidence 652 3221222110 00001122332 234445566777764 5688877777666544
No 368
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=50.70 E-value=7.9 Score=40.89 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=21.0
Q ss_pred hcCCCEEEEEeccCChhhhhhhh
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEV 158 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~ 158 (840)
..+|.+++.|+-..|++||++..
T Consensus 145 ~~gk~~I~vFtDp~CPYCkkl~~ 167 (273)
T 3tdg_A 145 ANKDKILYIVSDPMCPHCQKELT 167 (273)
T ss_dssp GGTTCEEEEEECTTCHHHHHHHH
T ss_pred CCCCeEEEEEECcCChhHHHHHH
Confidence 56889999999999999999975
No 369
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=49.86 E-value=33 Score=37.40 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 620 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 620 (840)
-++++||.+|++..++ ++|.+.|++++.-|.++... +|.+.. +.+.... ..++..--+..
T Consensus 117 l~IA~ALl~A~~~W~~----------------~~Y~~~A~~I~~~i~~~~~~--~g~l~~-~~d~~~~-~~~ln~SY~~~ 176 (350)
T 3ren_A 117 LRIIKALLLANNRWNS----------------FYYKFYAINIANSLLKHAEE--NETLVD-YIDNYGK-GNTTTLCYLDL 176 (350)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHEE--TTEECS-EECSSCB-CSEEEGGGCCH
T ss_pred HHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHHccc--cCcccC-CCCccCC-CCEeehHhcCH
Confidence 6789999999999987 78999999999999998765 354432 2222112 22222222345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003187 621 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 649 (840)
Q Consensus 621 ~aLl~LYeaTgd~~yL~~A~~L~~~~~~~ 649 (840)
.++-.+++. +..|.+.+..-.+.+.+.
T Consensus 177 ~a~~~f~~~--~~~W~~l~~~g~~lL~~g 203 (350)
T 3ren_A 177 PTMKLLSQV--DKKWEGIYEKSNSIIENG 203 (350)
T ss_dssp HHHHHHHHH--CTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhC
Confidence 566666666 477888887777777663
No 370
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=48.75 E-value=2e+02 Score=35.78 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEee-cCCCCCCCC-CcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHH
Q 003187 577 EVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPG-FLDDYAFLISGLLDLYEFGSGTKWLV-WAIELQNTQDEL 649 (840)
Q Consensus 577 e~A~~~~~fl~~~l~d~~~G~l~~~~-~~g~~~~~~-~leDyA~~i~aLl~LYeaTgd~~yL~-~A~~L~~~~~~~ 649 (840)
+.|++..+||.+.... .+|.+.+.| .+|++...+ .+|-++..+.++..+++ + |..... ..+..++.+.++
T Consensus 348 e~A~~~l~~L~~~Q~~-~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~-~-d~~~w~~~v~~al~~i~~~ 420 (1020)
T 1ulv_A 348 EAAARGVEWLFTYQQQ-PDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGR-T-DAGFYRNELKPAADYLVAA 420 (1020)
T ss_dssp HHHHHHHHHHHHHTCC-TTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTC-C-CHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHHh
Confidence 5788888888876523 357787876 456554332 56788899988888765 4 444444 677777777665
No 371
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=48.14 E-value=36 Score=33.39 Aligned_cols=18 Identities=6% Similarity=0.121 Sum_probs=14.4
Q ss_pred CCCE-EEEEeccCChhhhh
Q 003187 138 DVPI-FLSIGYSTCHWCHV 155 (840)
Q Consensus 138 ~KpI-~l~~g~~wC~wC~~ 155 (840)
||+| ++.|-++||+.|..
T Consensus 47 Gk~vVL~fyP~~~tp~Ct~ 65 (176)
T 4f82_A 47 GKRVVIFGLPGAFTPTCSA 65 (176)
T ss_dssp TCEEEEEEESCTTCHHHHH
T ss_pred CCeEEEEEEcCCCCCCCCH
Confidence 6765 55678999999987
No 372
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=47.50 E-value=3.3e+02 Score=33.36 Aligned_cols=135 Identities=14% Similarity=0.153 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc---c
Q 003187 577 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY-AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL---D 652 (840)
Q Consensus 577 e~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDy-A~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~---D 652 (840)
+.+++.++.+.+... .+|.+.+...++. .....|+ .+++.++.++|+.|||.++|+..-..++...+.+. |
T Consensus 595 ~lar~~L~~l~~~Q~--~dG~ip~~~p~~~---~~~~~~~~~~~i~~~~~yy~~tGD~~~L~e~yp~lk~~l~~~~~~~d 669 (956)
T 2okx_A 595 EIVERCLNLVPGSAD--ETPLYLDQVPSAW---SSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHID 669 (956)
T ss_dssp HHHHHHHHHGGGGTT--TCTTCCSBSSCSS---CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHhhcc--cCCCcCccccccc---cCCCcChHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455566655554332 2465544332211 1233466 46788999999999999999766555554444332 3
Q ss_pred ccCCccccCCCCCCccccccccC---CCCCCCChHHHHH---HHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHH
Q 003187 653 REGGGYFNTTGEDPSVLLRVKED---HDGAEPSGNSVSV---INLVRLASIVAGSK-SDYYRQNAEHSLAVFETRL 721 (840)
Q Consensus 653 ~~~Ggyf~t~~~~~~l~~R~k~~---~D~a~PS~Ns~~a---~~LlrL~~lt~~~~-~~~y~~~A~~~l~~~~~~i 721 (840)
+ . |+..... ... ..+.+. .++.....|+.+. ..+.+|+++.|+++ ...|++.|+++-+.|....
T Consensus 670 ~-~-GLl~~~~--~~~-~DW~d~~~~~~G~~~~~~a~~~~al~~~a~lA~~LG~~~~a~~y~~~A~~lk~ai~~~~ 740 (956)
T 2okx_A 670 D-S-GLLNMAG--WNL-LDWAPIDQPNEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVL 740 (956)
T ss_dssp T-T-SSBCCSS--CCC-CCSSSCCCCSSSEEHHHHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHHHHS
T ss_pred C-C-CCEEeCC--CCc-cCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh
Confidence 3 2 2322110 000 000000 0111112344433 33557777877632 3568888988888876644
No 373
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=46.64 E-value=4.1e+02 Score=33.02 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHH-HHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYME-VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFL 619 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle-~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~ 619 (840)
++.|+++..+.+. + .+... ..+++++|+.++--.++.+ + |.+.. .-+....+.+
T Consensus 389 g~~l~~~~~~~~~--d----------------~~~w~~~v~~al~~i~~~g~~~~~~-~---WEe~~---g~~~~t~~~~ 443 (1020)
T 1ulv_A 389 AFPILLANQIGRT--D----------------AGFYRNELKPAADYLVAAGPKTPQE-R---WEETG---GYSTSTLASQ 443 (1020)
T ss_dssp HHHHHHHHHHTCC--C----------------HHHHHHTHHHHHHHHHHHCSCBSBC-T---TSSCC---BEEHHHHHHH
T ss_pred hHHHHHHHHHHhc--C----------------HHHHHHHHHHHHHHHHHhCCCCChh-h---hcccC---CcCHHHHHHH
Confidence 7777777765431 1 23444 8899999998873211111 1 11110 0122333444
Q ss_pred HHHH---HHHHHHcCCH----HHHHHHHHHHHHHHHHccccc
Q 003187 620 ISGL---LDLYEFGSGT----KWLVWAIELQNTQDELFLDRE 654 (840)
Q Consensus 620 i~aL---l~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~ 654 (840)
..|| .++.+..|++ +|.+.|.+|.+.+.++||+++
T Consensus 444 ~~AL~~aa~lA~~~G~~~~a~~w~~~Ad~i~~~i~~~~w~~~ 485 (1020)
T 1ulv_A 444 IAALAAAADIAGKNGDAGSAAVYRATADEWQRSTEKWMFTTN 485 (1020)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHHHEESS
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 4444 4566667764 678899999999999999976
No 374
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=44.15 E-value=41 Score=36.81 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 620 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 620 (840)
-.+++||..|++.-++.. ..+|.+.|+++++-|+++...+ |...-...+. .....+++. ++.+
T Consensus 123 l~IA~ALl~A~~~W~~~g-------------~~~Y~~~A~~i~~~i~~~~~~~--~~~~l~pg~~-~~~~~~~np-SY~~ 185 (363)
T 1kwf_A 123 EDIALALIFADKLWGSSG-------------AINYGQEARTLINNLYNHCVEH--GSYVLKPGDR-WGGSSVTNP-SYFA 185 (363)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SSCHHHHHHHHHHHHHHHHBCT--TTCCBCSBSS-SCBTTBBCG-GGCC
T ss_pred HHHHHHHHHHHHHhCCCc-------------chhHHHHHHHHHHHHHHHhccC--CCeEEecccc-CCCCCEecc-hhcC
Confidence 678999999999998610 0269999999999999988764 3211111110 000112222 2222
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003187 621 -SGLLDLYEFGSGTKWLVWAIELQNTQDELF 650 (840)
Q Consensus 621 -~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F 650 (840)
..+-.+++.+++..|.+.+..-.+.+.+..
T Consensus 186 p~~~~~fa~~~~~~~W~~~~~~~~~~l~~~~ 216 (363)
T 1kwf_A 186 PAWYKVYAQYTGDTRWNQVADKCYQIVEEVK 216 (363)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHh
Confidence 333444567788899998888777776543
No 375
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=43.50 E-value=31 Score=36.82 Aligned_cols=66 Identities=11% Similarity=-0.033 Sum_probs=43.3
Q ss_pred EEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCC-CCCcEEEECCC
Q 003187 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGG-GWPLSVFLSPD 213 (840)
Q Consensus 141 I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~-G~P~~vfl~p~ 213 (840)
.+|.|...||..|..+.. .| .+||+.+.. .+..+.+|.++.+.+.. +++...|.. +.|+.+++++.
T Consensus 248 ~~l~f~~~~~~~~~~~~~-~~--~~vA~~~~~~~~~~f~~id~~~~~~~~~----~~~~~~gi~~~~P~~~i~~~~ 316 (350)
T 1sji_A 248 HIVAFAERSDPDGYEFLE-IL--KQVARDNTDNPDLSIVWIDPDDFPLLVA----YWEKTFKIDLFKPQIGVVNVT 316 (350)
T ss_dssp EEEEECCTTSHHHHHHHH-HH--HHHHHHGGGCSSCCEEEECGGGCHHHHH----HHHHHCCSCTTSCEEEEEESS
T ss_pred EEEEEEcCCCccHHHHHH-HH--HHHHHHhCCCCceEEEEECchhhHHHHH----HHHhhcCCCccCCcEEEEecc
Confidence 345588899988887654 34 347777754 78888899876654321 111223554 68999999983
No 376
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=43.05 E-value=29 Score=37.99 Aligned_cols=75 Identities=8% Similarity=0.009 Sum_probs=52.7
Q ss_pred HHHHHHHHHhccccC--CCeEEEeec---CCCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003187 580 ESAASFIRRHLYDEQ--THRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 651 (840)
Q Consensus 580 ~~~~~fl~~~l~d~~--~G~l~~~~~---~g~~---~~~~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~ 651 (840)
.++..|.+.++...+ +|.+-+.+. +|.. +...=.++=-+++.||+...+..++..|++.|+.|++.+.++-.
T Consensus 53 D~Lw~wt~~~l~~~d~~~~L~aW~w~~~~~g~~~v~D~nsAtDGDl~IA~ALl~A~~~Wg~~~Y~~~A~~il~~I~~~~v 132 (355)
T 3qxf_A 53 DNILDWTQNNLAQGSLKERLPAWLWGKKENSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEV 132 (355)
T ss_dssp HHHHHHHHHHHSTTCTTTSCCCSEEEECTTSCEEEEECSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHhccCCcccCCceEEEcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 367778888887643 344434442 2321 22233455578999999999999999999999999999988765
Q ss_pred ccc
Q 003187 652 DRE 654 (840)
Q Consensus 652 D~~ 654 (840)
.+.
T Consensus 133 ~~~ 135 (355)
T 3qxf_A 133 VTV 135 (355)
T ss_dssp EEE
T ss_pred ccC
Confidence 443
No 377
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=43.01 E-value=2.3e+02 Score=33.00 Aligned_cols=96 Identities=9% Similarity=0.022 Sum_probs=56.8
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchH
Q 003187 537 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY 616 (840)
Q Consensus 537 tsWNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDy 616 (840)
+.-.++++.||.++.++... ++.+ .++|.+.|.++.++| +++|+++ |.|.+.+.++.. ...-+|-
T Consensus 186 ~~T~~~~~~aL~~aa~lA~~------~g~~-----~~~w~~~ad~i~~~i-~~~w~~~-g~f~~~~~~~~~-~~~~lDa- 250 (599)
T 2vn4_A 186 FFTVANQHRALVEGATLAAT------LGQS-----GSAYSSVAPQVLCFL-QRFWVSS-GGYVDSNINTNE-GRTGKDV- 250 (599)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HTCC-----CHHHHHHHHHHHHHH-GGGEETT-TTEECSEESSCC-CCCCCBT-
T ss_pred hHHHHHHHHHHHHHHHHHHH------cCCC-----HHHHHHHHHHHHHHH-HhhcCCC-CCEEEEecCccC-CCCCcCH-
Confidence 44457777788887765432 1111 278999999999999 9999976 778776532210 1112232
Q ss_pred HHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHH
Q 003187 617 AFLISGLLDLYEF----------GSGTKWLVWAIELQNTQDE 648 (840)
Q Consensus 617 A~~i~aLl~LYea----------Tgd~~yL~~A~~L~~~~~~ 648 (840)
+.++ +.+-.|.. -.|++.+...+.+.+.+..
T Consensus 251 s~LL-~~~~~f~~~~~~~~~~~~p~dpr~l~Tl~ai~~~L~~ 291 (599)
T 2vn4_A 251 NSVL-TSIHTFDPNLGCDAGTFQPCSDKALSNLKVVVDSFRS 291 (599)
T ss_dssp HHHH-HHHHSCCGGGTTCTTTTCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHh-hhhccCCccccccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 3332 22222221 1577888877777766653
No 378
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=42.62 E-value=1.9e+02 Score=32.80 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=64.2
Q ss_pred CcchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccc-CCccccCCC---CCCcc-------------c
Q 003187 612 FLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDRE-GGGYFNTTG---EDPSV-------------L 669 (840)
Q Consensus 612 ~leDyA~~i~aLl~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~-~Ggyf~t~~---~~~~l-------------~ 669 (840)
-+|-.|+.+.++-.+|+.|||. .|.+..+.+++.+.+...++. .|-|.+.-. ..+++ +
T Consensus 178 ElDSla~~L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~pv~~tGL 257 (489)
T 2p0v_A 178 EIDSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVGL 257 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSCCCCSSC
T ss_pred hhhhhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCccCCCCc
Confidence 3567799999999999999965 556677778888877665432 244444210 01111 1
Q ss_pred cc-cccCCCCCCC-----ChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHhh
Q 003187 670 LR-VKEDHDGAEP-----SGNSVSVINLVRLASIVAGSK-SDYYRQNAEHSLAVFETRLKDM 724 (840)
Q Consensus 670 ~R-~k~~~D~a~P-----S~Ns~~a~~LlrL~~lt~~~~-~~~y~~~A~~~l~~~~~~i~~~ 724 (840)
++ ..-..|+++- ..|..+...|-+++.+...-. +....++++++.+.+...|.++
T Consensus 258 i~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~ 319 (489)
T 2p0v_A 258 IASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKY 319 (489)
T ss_dssp CCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0111222331 267777777777776652211 2455566666666666656554
No 379
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=42.23 E-value=1.8e+02 Score=37.59 Aligned_cols=243 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCC--CcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHH
Q 003187 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPH--FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYL 412 (840)
Q Consensus 335 ~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPH--FEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl 412 (840)
.++.+.+...++.+.. +-+-+|||. .|..-. -+--.+.-|..+..+++|... -..-....+++++||
T Consensus 979 ~~a~~~i~~g~~~ll~---~q~~dGgf~------~f~~~~~~~~~s~wlTAyv~~~l~~a~~~--~~v~~~~l~~a~~wL 1047 (1451)
T 4acq_A 979 SKAIGYLNTGYQRQLN---YKHYDGSYS------TFGERYGRNQGNTWLTAFVLKTFAQARAY--IFIDEAHITQALIWL 1047 (1451)
T ss_dssp HHHHHHHHHHHHHHGG---GBCTTSCBC------SSTTGGGCCCCCHHHHHHHHHHHHHHTTT--SCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---hcCCCCCee------eccCCCCCCCCchhHHHHHHHHHHHhhhh--cccCHHHHHHHHHHH
Q ss_pred HHhccCCCCceEeeccCCcccccccccccccchhHHHhhhhhHHHHHHHhCccCCCCcCCCCCCCCCCccCC--cceeec
Q 003187 413 RRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKG--KNVLIE 490 (840)
Q Consensus 413 ~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~~~vLg~~~~~~~~~y~v~~~Gn~~~~~~~d~~g~~eg--~nvL~~ 490 (840)
.+ .+.++|.|+ +.|..+ |..+.| .+-+..
T Consensus 1048 ~~-~Q~~dG~f~----------------~~g~~~--------------------------------~~~m~gg~~~~~~l 1078 (1451)
T 4acq_A 1048 SQ-RQKDNGCFR----------------SSGSLL--------------------------------NNAIKGGVEDEVTL 1078 (1451)
T ss_dssp HH-TEETTTEEC----------------CCCCCS--------------------------------CGGGCCSCSCHHHH
T ss_pred Hh-hcccCCccc----------------ccCccc--------------------------------chhhcCCCCCCccc
Q ss_pred cCCchHHHHhcCCCHH-----HHHHHHHHHHHHHHhhhcCCCCCCCcchhhhcHH------HHHHHHHHHHHHHhhhhhh
Q 003187 491 LNDSSASASKLGMPLE-----KYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWN------GLVISSFARASKILKSEAE 559 (840)
Q Consensus 491 ~~~~~~~a~~~g~~~e-----~l~~~l~~~r~kL~~~R~~R~~P~~DdKiltsWN------al~I~ALa~A~~~~~d~~~ 559 (840)
..-.-....+.|.+.. +..+.|+.....| .+ .+..+-++-|....|+.
T Consensus 1079 TAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~-------------------~~~~~~~~~y~~AllAyAlal~g~~-- 1137 (1451)
T 4acq_A 1079 SAYITIALLEIPLTVTHPVVRNALFCLESAWKTA-------------------QEGDHGSHVYTKALLAYAFALAGNQ-- 1137 (1451)
T ss_dssp HHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHH-------------------TSSCSSSTHHHHHHHHHHHHHHTCH--
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhc-------------------ccccccCChHHHHHHHHHHHhcCCh--
Q ss_pred hhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC----------CCCCCCcchHHHHHHHHHHHHHH
Q 003187 560 SAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP----------SKAPGFLDDYAFLISGLLDLYEF 629 (840)
Q Consensus 560 ~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~----------~~~~~~leDyA~~i~aLl~LYea 629 (840)
+.+..+.+-|.+.... ++|..+|.-.... .......|--|+++.+++.+-.+
T Consensus 1138 -----------------~~~~~~l~~L~~~a~~-~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~ 1199 (1451)
T 4acq_A 1138 -----------------DKRKEVLKSLNEEAVK-KDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPA 1199 (1451)
T ss_dssp -----------------HHHHHHHHHHHHHCCB-CSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSC
T ss_pred -----------------hHHHHHHHHHHHHhhc-cCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhcccc
Q ss_pred cCCHHHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC
Q 003187 630 GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVA 699 (840)
Q Consensus 630 Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~ 699 (840)
....-++.|..+.+.+.+.-.. +|||.+|. ...+++.+|.+.+..+.
T Consensus 1200 -~~~~d~~~a~~iv~WL~~qr~~--~Ggf~STQ--------------------dTv~aL~ALa~Y~~~~~ 1246 (1451)
T 4acq_A 1200 -PTSEDLTSATNIVKWITKQQNA--QGGFSSTQ--------------------DTVVALHALSKYGAATF 1246 (1451)
T ss_dssp -CCHHHHHHHHTTHHHHTTCCCT--TSCCSSHH--------------------HHHHHHHHHHHHHHHHC
T ss_pred -ccccchhhHHHHHHHHHHcCCC--CCCcccHH--------------------HHHHHHHHHHHHHHhcC
No 380
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=42.16 E-value=18 Score=33.45 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=12.5
Q ss_pred EEEEeccCChhhhhhh
Q 003187 142 FLSIGYSTCHWCHVME 157 (840)
Q Consensus 142 ~l~~g~~wC~wC~~me 157 (840)
+..++.++|++|+...
T Consensus 3 i~lY~~~~C~~C~ka~ 18 (132)
T 1z3e_A 3 VTLYTSPSCTSCRKAR 18 (132)
T ss_dssp EEEEECTTCHHHHHHH
T ss_pred EEEEeCCCChHHHHHH
Confidence 3457899999999754
No 381
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=42.03 E-value=2.6e+02 Score=28.47 Aligned_cols=121 Identities=9% Similarity=0.002 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCChhHH-HHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEE
Q 003187 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEI-QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (840)
Q Consensus 284 ~~~~~~~~l~~~~D~~~GGfg~aPKFP~~~~l-~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~ 362 (840)
.++..+..+.. +-...|||+.-+.-|....+ .+.+.......... ..++ +++.++++-+.. -.-+-+|+|.
T Consensus 39 ~i~~g~~~~l~-~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~--~v~~---~~i~~a~~~L~~--~~Q~~dG~f~ 110 (277)
T 1qqf_A 39 LIKKGYTQQLA-FKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLI--AIDS---QVLCGAVKWLIL--EKQKPDGVFQ 110 (277)
T ss_dssp HHHHHHHHHHT-TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS--CCCH---HHHHHHHHHHHH--HHBCTTSCBC
T ss_pred HHHHHHHHHHH-hcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcC--CCCH---HHHHHHHHHHHH--hccCCCCCcc
Confidence 34555655653 45668999775554443322 22222221111101 1122 344455554431 0122456676
Q ss_pred EEecCCCCCCCCCc----------chHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhcc
Q 003187 363 RYSVDERWHVPHFE----------KMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDMI 417 (840)
Q Consensus 363 RYsvD~~W~vPHFE----------KMLYDNA~Ll~~ya~Ay~~t--gd~~y~~~A~~t~~fl~r~m~ 417 (840)
. .|.+.|-+ .-++-.|..+.++.++.... +-+.....++++++||.+...
T Consensus 111 ~-----~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~ 172 (277)
T 1qqf_A 111 E-----DGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYL 172 (277)
T ss_dssp C-----SSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHT
T ss_pred C-----CccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhc
Confidence 3 56666533 12556889999998886653 334466788999999988653
No 382
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=41.88 E-value=1.7e+02 Score=35.38 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeec--CCC--CCC-CCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 003187 577 EVAESAASFIRRHLYDEQTHRLQHSFR--NGP--SKA-PGFLDDYAFLISGLLDLYEFGSGTKWLV 637 (840)
Q Consensus 577 e~A~~~~~fl~~~l~d~~~G~l~~~~~--~g~--~~~-~~~leDyA~~i~aLl~LYeaTgd~~yL~ 637 (840)
+.|++...++..+... +|.+.|.+. .+. ..+ ..+.||..+++.++.+.++.|||..+|+
T Consensus 382 e~ar~~il~~~~~Q~~--dG~v~h~~~p~~~~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~ 445 (822)
T 3rrs_A 382 ERARERIIDIASTQFA--DGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILD 445 (822)
T ss_dssp HHHHHHHHHHHTTCCT--TSCCCSEEETTTTEECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHHHHHHHHHhhcc--cCcccceecCcCCCCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHH
Confidence 4566666666666553 577777764 222 111 4578899999999999999999999986
No 383
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=41.49 E-value=1.2e+02 Score=32.72 Aligned_cols=115 Identities=6% Similarity=0.031 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCh-----hHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCC
Q 003187 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPRP-----VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 358 (840)
Q Consensus 284 ~~~~~~~~l~~~~D~~~GGfg~aPKFP~~-----~~l~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~ 358 (840)
.++++++.+...- ...||||.=++-+.. .++.+|.+...... .+ ..++.++++-+.. .-.-+
T Consensus 92 ~i~~g~~~ll~~Q-~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~------v~---~~~i~~a~~~L~~---~Q~~d 158 (367)
T 1hzf_A 92 LIQKGYMRIQQFR-KADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVG------GS---PEKLQETSNWLLS---QQQAD 158 (367)
T ss_dssp HHHHHHHHHHTTB-CTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTC------CC---HHHHHHHHHHHGG---GBCTT
T ss_pred HHHHHHHHHHhcc-CCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhC------CC---HHHHHHHHHHHHH---hhccC
Confidence 4566666666443 457888653332222 23344443322110 11 3566667776655 23346
Q ss_pred CeEEEEecCCCCCCCCCcc---------hHHHHHHHHHHHHHHHHccCC-------hHHHHHHHHHHHHHHHhc
Q 003187 359 GGFHRYSVDERWHVPHFEK---------MLYDQGQLANVYLDAFSLTKD-------VFYSYICRDILDYLRRDM 416 (840)
Q Consensus 359 GGF~RYsvD~~W~vPHFEK---------MLYDNA~Ll~~ya~Ay~~tgd-------~~y~~~A~~t~~fl~r~m 416 (840)
|||.. .|.+.|-+. -++-.|..+.++.++.....+ +.+...++++++||.+.+
T Consensus 159 G~~~~-----~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~ 227 (367)
T 1hzf_A 159 GSFQD-----PCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKA 227 (367)
T ss_dssp SCBCC-----SSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-----ccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhh
Confidence 88873 566655432 256678889999888766544 345677888999998864
No 384
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=39.45 E-value=2.1e+02 Score=34.49 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeec--CCC--CCC-CCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 003187 577 EVAESAASFIRRHLYDEQTHRLQHSFR--NGP--SKA-PGFLDDYAFLISGLLDLYEFGSGTKWLV 637 (840)
Q Consensus 577 e~A~~~~~fl~~~l~d~~~G~l~~~~~--~g~--~~~-~~~leDyA~~i~aLl~LYeaTgd~~yL~ 637 (840)
+.|++...++..+... +|.+.|.+. .+. ... ..+.||..+++.++.+.++.|||..+|+
T Consensus 375 ~~~r~~il~~~~~Q~~--dG~~~h~~~p~~~~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~ 438 (811)
T 3qde_A 375 ERARERLLDLAATQLE--DGSAYHQYQPLTKKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILK 438 (811)
T ss_dssp HHHHHHHHHHHTTBCT--TSCBCSEECTTTCCEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHHHHHHHHhhccc--CCCccceecCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHH
Confidence 4666666666666553 577777764 222 112 3578899999999999999999999985
No 385
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Probab=39.19 E-value=74 Score=35.32 Aligned_cols=123 Identities=18% Similarity=0.122 Sum_probs=72.3
Q ss_pred HHHHHHHHHhc----cccC---CCeEEEee--c-CCCC-CCC--CCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 003187 580 ESAASFIRRHL----YDEQ---THRLQHSF--R-NGPS-KAP--GFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQ 643 (840)
Q Consensus 580 ~~~~~fl~~~l----~d~~---~G~l~~~~--~-~g~~-~~~--~~leDyA~~i~aLl~LYeaTg---d~~yL~~A~~L~ 643 (840)
.++..|.+.++ ..++ +|.+-|.+ . +|.. +.. .=.++=-+++.||+...+..+ +..|++.|+.|+
T Consensus 97 D~L~~wtk~~l~~~~~~~~g~~~~l~aW~~g~~~~g~~~d~n~~sAtDgDl~IA~ALl~A~~~Wg~~g~~~Y~~~A~~il 176 (405)
T 1h12_A 97 DNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPAPDGEEYFAFALLNASARWGNSGEFNYYNDAITML 176 (405)
T ss_dssp HHHHHHHHHHTBCCTTCSSGGGTTCBEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHHHHHHHCSSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccCCcccceEEEeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Confidence 46778888888 3333 56676666 2 2322 111 223444689999999999999 789999999999
Q ss_pred HHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHH-HHHhCC-CCchHHHHHHHHHHHHHH
Q 003187 644 NTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL-ASIVAG-SKSDYYRQNAEHSLAVFE 718 (840)
Q Consensus 644 ~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL-~~lt~~-~~~~~y~~~A~~~l~~~~ 718 (840)
+.+.++= +.+|..-..+... +..-||=-. -.++++ +.++++ .+.+.|.+.++..++.+.
T Consensus 177 ~~I~~~~--~~~~~~~f~p~~~-----------~~~npSY~~---pa~~~~fa~~~~~~~~~~~W~~v~~~~~~lL~ 237 (405)
T 1h12_A 177 NTIKNKL--MENQIIRFSPYID-----------NLTDPSYHI---PAFYDYFANNVTNQADKNYWRQVATKSRTLLK 237 (405)
T ss_dssp HHHHHHS--EETTEECSCTTCS-----------SCBCGGGCC---HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CCCCeeEEecCCC-----------CeeChhhcC---HHHHHHHHHhcccccCchhHHHHHHHHHHHHH
Confidence 9998775 3333211122111 112234322 233444 666643 111457787777666653
No 386
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=38.88 E-value=12 Score=35.45 Aligned_cols=60 Identities=8% Similarity=0.079 Sum_probs=35.4
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003187 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (840)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~ 217 (840)
.++.++|.+|++-. ++|+++ .-+..+|..+.|.-.....+.++. .|||.--+++..|..+
T Consensus 6 iY~~p~C~~crkak----------~~L~~~gi~~~~idi~~~~~~~~eL~~~~~~----~g~p~~~l~n~~~~~y 66 (141)
T 1s3c_A 6 IYHNPASGTSRNTL----------EMIRNSGTEPTIILYLENPPSRDELVKLIAD----MGISVRALLRKNVEPY 66 (141)
T ss_dssp EECCTTCHHHHHHH----------HHHHHTTCCCEEECTTTSCCCHHHHHHHHHH----HTSCHHHHBCSSSHHH
T ss_pred EEECCCChHHHHHH----------HHHHHcCCCEEEEECCCCCccHHHHHHHhcc----cCCCHHHhccCCchhH
Confidence 47899999999754 466653 223345665444323333333333 3889777777776544
No 387
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=38.77 E-value=5.6e+02 Score=30.31 Aligned_cols=92 Identities=8% Similarity=-0.070 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHH
Q 003187 539 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF 618 (840)
Q Consensus 539 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~ 618 (840)
|--..+.||+.++-++++-+ +.++|++.|.+.++.-.+....++ |+. .+.-+.=+.+
T Consensus 261 h~l~~~~aL~~agl~~pe~~------------~~~~w~~~A~~~L~~el~~Qi~~D-G~~----------~E~Sp~Yh~~ 317 (702)
T 4fnv_A 261 ILISQANALATAGTLMPEFK------------NAEKWMNTGYQILSEEVQNQIMSD-GWH----------KEMSLHYHIG 317 (702)
T ss_dssp HHHHHHHHHHHHHHHCTTBT------------THHHHHHHHHHHHHHHHHHSBCTT-SCB----------TTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCc------------cHHHHHHHHHHHHHHHHHhhcCCC-Ccc----------ccCCHHHHHH
Confidence 44445678888888887411 126899999998877666666654 422 1222344555
Q ss_pred HHHHHHHHH---HHcCC-----HHHHHHHHHHHHHHHHHccccc
Q 003187 619 LISGLLDLY---EFGSG-----TKWLVWAIELQNTQDELFLDRE 654 (840)
Q Consensus 619 ~i~aLl~LY---eaTgd-----~~yL~~A~~L~~~~~~~F~D~~ 654 (840)
++..++.+. +..|- +.+.+..+++...+. .+..++
T Consensus 318 vL~~ll~~~~la~~~g~~~~~p~~~~~~L~km~~~l~-~l~~PD 360 (702)
T 4fnv_A 318 IVADFYEAMKLAEANQLSSKLPSDFTEPLRKAAEVVM-YFTYPN 360 (702)
T ss_dssp HHHHHHHHHHHHHHTTCGGGSCTTTTHHHHHHHHHHH-HTSCGG
T ss_pred HHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHH-HHcCCC
Confidence 566555443 33343 345666666666654 344444
No 388
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=37.84 E-value=22 Score=32.51 Aligned_cols=59 Identities=17% Similarity=0.344 Sum_probs=33.1
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
..++.++|.+|++-. ++|+++ .-+..+|..+.|.-.......++. .|.|.--+++..|.
T Consensus 6 ~iY~~~~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~----~g~~~~~l~n~~~~ 65 (120)
T 3fz4_A 6 TFYEYPKCSTCRRAK----------AELDDLAWDYDAIDIKKNPPAASLIRNWLEN----SGLELKKFFNTSGQ 65 (120)
T ss_dssp EEEECSSCHHHHHHH----------HHHHHHTCCEEEEETTTSCCCHHHHHHHHHH----SCCCGGGGBCTTSH
T ss_pred EEEeCCCChHHHHHH----------HHHHHcCCceEEEEeccCchhHHHHHHHHHH----cCCCHHHHhCCCCc
Confidence 447899999999864 355542 233346665544333333333333 36665555666544
No 389
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=37.24 E-value=83 Score=34.55 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhccCCCCceEe
Q 003187 404 ICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 404 ~A~~t~~fl~r~m~~~~Ggfys 425 (840)
.++++++||++ .+.++|||-.
T Consensus 192 ~v~ka~~fL~s-cQn~DGGfGe 212 (377)
T 1n4q_B 192 DMKKAISYIRR-SMSYDNGLAQ 212 (377)
T ss_dssp CHHHHHHHHHH-TBCTTSSBBS
T ss_pred HHHHHHHHHHH-hcCCCCCCCC
Confidence 46889999997 6678999954
No 390
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=37.18 E-value=24 Score=32.16 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=32.6
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~ 216 (840)
..++.++|++|+.-. ++|+++ .-+..+|..+.|.-.......++. .|.|.--+++..|..
T Consensus 3 ~iY~~~~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~el~~~l~~----~~~~~~~l~n~~~~~ 63 (120)
T 3l78_A 3 TLFLSPSCTSCRKAR----------AWLNRHDVVFQEHNIMTSPLSRDELLKILSY----TENGTEDIISTRSKV 63 (120)
T ss_dssp EEEECSSCHHHHHHH----------HHHHHTTCCEEEEETTTSCCCHHHHHHHHHH----CSSTHHHHBCTTCHH
T ss_pred EEEeCCCCHHHHHHH----------HHHHHcCCCeEEEecccCCCcHHHHHHHHhh----cCCCHHHhhcCCcHH
Confidence 457899999999864 355542 223345665444333333333332 255555566666543
No 391
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=36.72 E-value=3.5e+02 Score=28.12 Aligned_cols=120 Identities=11% Similarity=-0.013 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCChhHH-HHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCeEE
Q 003187 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEI-QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (840)
Q Consensus 284 ~~~~~~~~l~~~~D~~~GGfg~aPKFP~~~~l-~~Ll~~~~~~~~~~~~~~~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~ 362 (840)
.++..+..+.. +-...|||+.-++-|....+ .+.+.......... ..++ +++.++++-+.. -.-+-+|+|.
T Consensus 55 ~i~~g~~~~l~-~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~--~v~~---~~i~~a~~~L~~--~~Q~~dGsf~ 126 (310)
T 2wy7_A 55 LIKKGYTQQLA-FRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI--AIDS---QVLCGAVKWLIL--EKQKPDGVFQ 126 (310)
T ss_dssp HHHHHHHHHHT-TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS--CCCH---HHHHHHHHHHHH--HHBCTTSCBC
T ss_pred HHHHHHHHHHH-hcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcC--CCCH---HHHHHHHHHHHH--hhcCCCCccc
Confidence 35555655653 45668999775554443222 22222221111001 1122 344555555431 0122456676
Q ss_pred EEecCCCCCCCCCc----------chHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhc
Q 003187 363 RYSVDERWHVPHFE----------KMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDM 416 (840)
Q Consensus 363 RYsvD~~W~vPHFE----------KMLYDNA~Ll~~ya~Ay~~t--gd~~y~~~A~~t~~fl~r~m 416 (840)
. .|.+.|-+ .-++-.|..+.++.++.... +-+.....++++++||.+..
T Consensus 127 ~-----~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~ 187 (310)
T 2wy7_A 127 E-----DAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANY 187 (310)
T ss_dssp C-----SSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHG
T ss_pred c-----CCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHh
Confidence 3 56665532 22566899999999887653 33446678899999998865
No 392
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=36.53 E-value=4.9e+02 Score=30.82 Aligned_cols=27 Identities=11% Similarity=-0.298 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH
Q 003187 383 GQLANVYLDAFSLTKDVFYSYICRDIL 409 (840)
Q Consensus 383 A~Ll~~ya~Ay~~tgd~~y~~~A~~t~ 409 (840)
..-+..++-||++|||..|.+.|++.+
T Consensus 209 ~~~l~~la~ay~ltgd~kya~~a~~~L 235 (776)
T 3a0o_A 209 IYAIRHLAIAGRVLGRDDLLDASRKWL 235 (776)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 677888999999999999988877754
No 393
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=35.36 E-value=5.3e+02 Score=29.96 Aligned_cols=124 Identities=14% Similarity=0.061 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEeecCC--------CCC-----CCCCc-------chH-HHHHHHHHHHHHHc
Q 003187 572 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG--------PSK-----APGFL-------DDY-AFLISGLLDLYEFG 630 (840)
Q Consensus 572 ~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g--------~~~-----~~~~l-------eDy-A~~i~aLl~LYeaT 630 (840)
.++.|+.++-.++||++... ..+.|+....+| .+. .+.+. .|- +.++.+|...+.+.
T Consensus 90 ~~d~ldeikwg~Dyllk~~~--~~~~~y~qVGdg~~DH~~w~~pe~m~~~r~~y~~~~~~pgsd~a~~~AAAlAaAS~vf 167 (605)
T 1tf4_A 90 MPYLKDNLRWVNDYFIKAHP--SPNVLYVQVGDGDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVF 167 (605)
T ss_dssp HHHHHHHHHHHHHHHHHTCS--BTTBEEEEESCHHHHHHCCSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCcCccccCChhhCCCCCceeEecCCCCcchHHHHHHHHHHHHHhhc
Confidence 37899999999999998753 345677654442 110 01110 222 33444555555554
Q ss_pred C--CH----HHHHHHHHHHHHHHHHcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCch
Q 003187 631 S--GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSD 704 (840)
Q Consensus 631 g--d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns~~a~~LlrL~~lt~~~~~~ 704 (840)
. |+ ++|+.|+++++.++++ .|. |..... ....|. ..-+-.-.++++-..|+..||+ .
T Consensus 168 k~~D~~yA~~~L~~Ak~~~~fA~~~-----~g~-y~~~~~-------~~~~Y~-s~s~~~DEl~WAAawLy~ATgd---~ 230 (605)
T 1tf4_A 168 ADDDPAYAATLVQHAKQLYTFADTY-----RGV-YSDCVP-------AGAFYN-SWSGYQDELVWGAYWLYKATGD---D 230 (605)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHS-----CCC-GGGTST-------THHHHC-CSSCSHHHHHHHHHHHHHHHCC---H
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHc-----CCC-cCCCCC-------cccccc-CCCCCchHHHHHHHHHHHHhCC---H
Confidence 4 44 5577888888777653 122 221110 000000 0011234677788889999986 7
Q ss_pred HHHHHHHHHH
Q 003187 705 YYRQNAEHSL 714 (840)
Q Consensus 705 ~y~~~A~~~l 714 (840)
.|++.++...
T Consensus 231 ~Yl~~a~~~~ 240 (605)
T 1tf4_A 231 SYLAKAEYEY 240 (605)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHH
Confidence 8999887643
No 394
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=34.75 E-value=18 Score=33.03 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=33.3
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~g~ 215 (840)
..++.++|.+|++-. ++|+++ .-+..+|..+.|.-.......++.+ |+|.--+++..|.
T Consensus 7 ~iY~~p~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~----g~~~~~l~n~~~~ 66 (120)
T 3gkx_A 7 LFLQYPACSTCQKAK----------KWLIENNIEYTNRLIVDDNPTVEELKAWIPLS----GLPVKKFFNTSGV 66 (120)
T ss_dssp EEEECTTCHHHHHHH----------HHHHHTTCCCEEEETTTTCCCHHHHHHHHHHH----TSCGGGGBCTTSH
T ss_pred EEEECCCChHHHHHH----------HHHHHcCCceEEEecccCcCCHHHHHHHHHHc----CCCHHHeEeCCCc
Confidence 457899999999864 456553 2223356654443333333333333 6776556666544
No 395
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Probab=33.70 E-value=48 Score=36.82 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcchHHHHH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 620 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~~~~~leDyA~~i 620 (840)
-.+++||..|++.-++.. ..+|++.|+++++-|+++. +++|.+. +..+.. ..-+=++.+
T Consensus 147 l~IA~ALl~A~~~Wg~~g-------------~~~Y~~~A~~il~~I~~~~--~~~~~~~--f~p~~~----~~~npSY~~ 205 (405)
T 1h12_A 147 EYFAFALLNASARWGNSG-------------EFNYYNDAITMLNTIKNKL--MENQIIR--FSPYID----NLTDPSYHI 205 (405)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SCCHHHHHHHHHHHHHHHS--EETTEEC--SCTTCS----SCBCGGGCC
T ss_pred HHHHHHHHHHHHHcCCCC-------------chhHHHHHHHHHHHHHHhC--CCCCeeE--EecCCC----CeeChhhcC
Confidence 678999999999998410 1579999999999999887 3444332 222221 111223344
Q ss_pred HHHHHH-HHHcCC----HHHHHHHHHHHHHHHHHc
Q 003187 621 SGLLDL-YEFGSG----TKWLVWAIELQNTQDELF 650 (840)
Q Consensus 621 ~aLl~L-YeaTgd----~~yL~~A~~L~~~~~~~F 650 (840)
-+++++ ++.+++ +.|.+.+..-.+.+.+..
T Consensus 206 pa~~~~fa~~~~~~~~~~~W~~v~~~~~~lL~~~~ 240 (405)
T 1h12_A 206 PAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHF 240 (405)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHHhc
Confidence 577777 556766 779999888877776554
No 396
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=33.29 E-value=43 Score=38.54 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=37.3
Q ss_pred cchHHHHHHHH---HHHHHHcCCH----HHHHHHHHHHHHHHHHcccccCCccccCC
Q 003187 613 LDDYAFLISGL---LDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 662 (840)
Q Consensus 613 leDyA~~i~aL---l~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 662 (840)
.|=.|++..++ .++++..|+. +|.+.|.++.+.+.++|||++.|.||+-.
T Consensus 305 VDlnA~ly~a~~~la~lA~~lG~~~~a~~~~~~A~~lk~ai~~~fWdee~G~y~D~~ 361 (535)
T 2jg0_A 305 VDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADYD 361 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTTEECCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEe
Confidence 34456555554 4566667764 68999999999999999999888787643
No 397
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=33.16 E-value=45 Score=34.45 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003187 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (840)
Q Consensus 334 ~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~ 413 (840)
..++.+.+...++.+.. +-+-+|||.-|.-+ +--.+..|..+.+++.+-.... .-.++.+++++||.
T Consensus 33 ~~~~~~~i~~g~~~~l~---~q~~dGgf~~f~~~--------~~s~wlTa~v~~~l~~a~~~~~--v~~~~i~~a~~~L~ 99 (277)
T 1qqf_A 33 RQEALELIKKGYTQQLA---FKQPISAYAAFNNR--------PPSTWLTAYVSRVFSLAANLIA--IDSQVLCGAVKWLI 99 (277)
T ss_dssp HHHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHTTTSC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hcCCCCCccccCCC--------CccHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHH
Confidence 35778888888888876 57789999743211 2235678999999999876532 12467789999999
Q ss_pred HhccCCCCceEe
Q 003187 414 RDMIGPGGEIFS 425 (840)
Q Consensus 414 r~m~~~~Ggfys 425 (840)
++.+.++|.|+.
T Consensus 100 ~~~Q~~dG~f~~ 111 (277)
T 1qqf_A 100 LEKQKPDGVFQE 111 (277)
T ss_dssp HHHBCTTSCBCC
T ss_pred HhccCCCCCccC
Confidence 646678898864
No 398
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=32.69 E-value=5.2e+02 Score=28.58 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHH-h--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC--CCCCCCcc
Q 003187 540 NGLVISSFARASKI-L--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--SKAPGFLD 614 (840)
Q Consensus 540 Nal~I~ALa~A~~~-~--~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~--~~~~~~le 614 (840)
.+..|.+|++++.. . ++ +.|.+++.+..+||+..-.. +|++-..+.+.. .....|-|
T Consensus 151 Ta~vl~aL~rv~~~~t~~~~----------------~~y~~Ai~Rgl~wlL~mQ~~--nGGWpqFdpdn~~y~~~IpFnD 212 (408)
T 1r76_A 151 TVTEIRFLAQVVSQLAPEEA----------------APYRDAALKGIEYLLASQFP--NGGWPQVWPLEGGYHDAITYND 212 (408)
T ss_dssp THHHHHHHHHHHHHSCGGGC----------------HHHHHHHHHHHHHHHHHSCT--TSCCBSBSSCCCGGGGSEECGG
T ss_pred HHHHHHHHHHHHhhcccccc----------------HHHHHHHHHHHHHHHHccCC--CCCCcCcCccccccccCCCcCc
Confidence 38889999999987 5 43 78999999999999987764 566533332221 11123444
Q ss_pred hH-HHHHHHHHHHHHH
Q 003187 615 DY-AFLISGLLDLYEF 629 (840)
Q Consensus 615 Dy-A~~i~aLl~LYea 629 (840)
|- +.+++.|..+.+.
T Consensus 213 Dvt~rvle~L~~~~~~ 228 (408)
T 1r76_A 213 DALVHVAELLSDIAAG 228 (408)
T ss_dssp GHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 44 5666667677663
No 399
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=31.99 E-value=1.1e+02 Score=27.87 Aligned_cols=66 Identities=6% Similarity=-0.209 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003187 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (840)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~ 207 (840)
.+.+++..+.+++++|-|..+||..|.. .| -++|+.+ +++....++- +++.+.| +.. .|+.
T Consensus 29 ~~e~e~fi~~~~v~VVGfF~~~~~~~~~----~F--~~~A~~~-~d~~F~~t~~---~~v~~~~--------~v~-~~~v 89 (124)
T 2l4c_A 29 VPAAMEFIAATEVAVIGFFQDLEIPAVP----IL--HSMVQKF-PGVSFGISTD---SEVLTHY--------NIT-GNTI 89 (124)
T ss_dssp HHHHHHHHHTSSEEEEEECSCTTSTHHH----HH--HHHHHHC-TTSEEEEECC---HHHHHHT--------TCC-SSCE
T ss_pred HHHHHHHHhcCCCEEEEEECCCCChhHH----HH--HHHHHhC-CCceEEEECh---HHHHHHc--------CCC-CCeE
Confidence 4556667778899999999999999954 23 3567777 6666666643 6666555 555 6888
Q ss_pred EEECC
Q 003187 208 VFLSP 212 (840)
Q Consensus 208 vfl~p 212 (840)
+++.+
T Consensus 90 vlfkk 94 (124)
T 2l4c_A 90 CLFRL 94 (124)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 88886
No 400
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=31.86 E-value=2.4e+02 Score=32.00 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CC-----------------------
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-TH----------------------- 596 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~-~G----------------------- 596 (840)
|..|.++-..++.++|. .-| .+.|.++.+.+++++.+...+++ .|
T Consensus 183 a~~L~la~~Yy~~TgD~---~~f--------~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~p 251 (489)
T 2p0v_A 183 CYPIRLAYHYWKTTGDA---SVF--------SDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNP 251 (489)
T ss_dssp HHHHHHHHHHHHHHCCC---TTS--------SHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSC
T ss_pred HHHHHHHHHHHHHhCCc---hhh--------HHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCc
Confidence 88999999999999972 222 26899999999999988666532 11
Q ss_pred ----eEEEe-ecCC-CCC-CCCCcchHHHHHHHHHHHHHH---cC-CH----HHHHHHHHHHHHHHHHccccc--CCc-c
Q 003187 597 ----RLQHS-FRNG-PSK-APGFLDDYAFLISGLLDLYEF---GS-GT----KWLVWAIELQNTQDELFLDRE--GGG-Y 658 (840)
Q Consensus 597 ----~l~~~-~~~g-~~~-~~~~leDyA~~i~aLl~LYea---Tg-d~----~yL~~A~~L~~~~~~~F~D~~--~Gg-y 658 (840)
||.++ ++.. .+. ..=+....+++..+|-.+.++ -+ +. +|.+.|.+|-+.+.++.+++. .|. |
T Consensus 252 v~~tGLi~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~gv~~~p~~G~if 331 (489)
T 2p0v_A 252 VKPVGLIASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKYAVCNHPKYGKIY 331 (489)
T ss_dssp CCCSSCCCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred cCCCCceeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCEecCCCCccEE
Confidence 12222 1110 000 111234557777777666644 33 43 477888888888888888754 342 2
Q ss_pred -ccCCCCCCccccccccCCCC-CCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 003187 659 -FNTTGEDPSVLLRVKEDHDG-AEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 716 (840)
Q Consensus 659 -f~t~~~~~~l~~R~k~~~D~-a~PS~Ns~~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~ 716 (840)
|.++. .+.. ..+|. -.||=-|+- -|+-+..+ |+.|+...+.++..
T Consensus 332 AyEVDG-~G~~-----~~mDDanvpSLLslP-----ylG~~~~d--Dpiy~nTr~~IlS~ 378 (489)
T 2p0v_A 332 AFEVDG-FGNQ-----LLMDDANVPSLIALP-----YLGDVKVT--DPIYQNTRKFVWSE 378 (489)
T ss_dssp CSEECS-SSCE-----ECCCCSSSSCSTTHH-----HHTSSCTT--CHHHHHHHHHHTST
T ss_pred EEEecC-CCCc-----ccCCCCCccHHHHHH-----HhCCCCCC--CHHHHHHHHHHHhh
Confidence 23322 1111 12343 447765532 22322222 57787666655544
No 401
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=31.52 E-value=2.4e+02 Score=32.35 Aligned_cols=22 Identities=5% Similarity=0.061 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhccCCCCceEe
Q 003187 403 YICRDILDYLRRDMIGPGGEIFS 425 (840)
Q Consensus 403 ~~A~~t~~fl~r~m~~~~Ggfys 425 (840)
..++++++||++ .+..+|||-.
T Consensus 215 ~~v~kav~fI~s-cQn~DGGfGe 236 (520)
T 3q7a_B 215 ELLHNVDKFVSA-CQTYEGGFAC 236 (520)
T ss_dssp HHHTTHHHHHHT-TBCTTSSBCS
T ss_pred HHHHHHHHHHHH-hcCCCCCccC
Confidence 467889999987 6778999854
No 402
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=30.66 E-value=24 Score=32.29 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=35.6
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCC-CcEEEECCCCcee
Q 003187 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGW-PLSVFLSPDLKPL 217 (840)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~-P~~vfl~p~g~~~ 217 (840)
..++.++|.+|++-. ++|+++ .-+..+|..+.|.-.......++. .|| |.--+++..|..+
T Consensus 8 ~iY~~p~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~----~g~~~~~~l~n~~~~~~ 70 (121)
T 3rdw_A 8 TIYHNPRCSKSRETL----------ALVEQQGITPQVVLYLETPPSVDKLKELLQQ----LGFSDARQLMRTKEDLY 70 (121)
T ss_dssp EEECCTTCHHHHHHH----------HHHHTTTCCCEEECTTTSCCCHHHHHHHHHH----TTCSSGGGGBCTTSHHH
T ss_pred EEEECCCCHHHHHHH----------HHHHHcCCCcEEEeeccCCCcHHHHHHHHHh----cCCcCHHHHhcCCChhh
Confidence 347899999999864 466553 223356666554433333333333 378 7655667665543
No 403
>1wu4_A Xylanase Y; (alpla/alpha)6 barrel, glycoside hydrolase family 8, hydrola; 1.35A {Bacillus halodurans} SCOP: a.102.1.2 PDB: 1wu5_A* 3a3v_A 2drr_A 2drs_A 1wu6_A* 2drq_A 2dro_A
Probab=29.80 E-value=64 Score=35.67 Aligned_cols=97 Identities=9% Similarity=-0.045 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC---CC-CCCcchH
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---KA-PGFLDDY 616 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~---~~-~~~leDy 616 (840)
-.+++||..|++.-++. +| +..+|.+.|+++++-|+++-.... |+.. ...|.. .. ....-+=
T Consensus 131 l~IA~ALl~A~~~Wg~~----------~g-~~~~Y~~~A~~il~~i~~~~~~~~-~~~~--l~p~~~~~~f~~~~~~~np 196 (396)
T 1wu4_A 131 EYFALALFFASHRWGDG----------DE-QPFNYSEQARKLLHTCVHNGEGGP-GHPM--WNRDNKLIKFIPEVEFSDP 196 (396)
T ss_dssp HHHHHHHHHHHHHHCCC----------SS-TTCCHHHHHHHHHHHHHHTTSSSS-CCCS--BCTTTCCBCSSTTCSEECG
T ss_pred HHHHHHHHHHHHHhCCC----------CC-CcHHHHHHHHHHHHHHHHhhccCC-Ccce--ecCCCceeeecCCCCeeCh
Confidence 67899999999999841 00 015799999999999998765421 2110 000100 00 0111122
Q ss_pred HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHcc
Q 003187 617 AFLISGLLDLYE----FGSGTKWLVWAIELQNTQDELFL 651 (840)
Q Consensus 617 A~~i~aLl~LYe----aTgd~~yL~~A~~L~~~~~~~F~ 651 (840)
++.+-++.+++. .++++.|.+.+..-.+.+.+...
T Consensus 197 SY~~pa~~~~fa~~~~~~~~~~W~~~~~~~~~lL~~~~~ 235 (396)
T 1wu4_A 197 SYHLPHFYELFSLWANEEDRVFWKEAAEASREYLKIACH 235 (396)
T ss_dssp GGCCHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHSC
T ss_pred hhccHHHHHHHHHhcccccChhHHHHHHHHHHHHHhccc
Confidence 334457778755 55777899999988888766543
No 404
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=29.41 E-value=37 Score=27.13 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=27.0
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFDV 522 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~~ 522 (840)
+..++|+.+|+++..+...+..++++|...
T Consensus 27 s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 27 TLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999763
No 405
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=29.39 E-value=55 Score=34.44 Aligned_cols=79 Identities=10% Similarity=0.094 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003187 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (840)
Q Consensus 334 ~~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~ 413 (840)
.+++.+++...++.+.. +-+-+|||.-|.- . +--.+..|..+.+++.|-.... .-.++.+++++||.
T Consensus 49 ~~~~~~~i~~g~~~~l~---~q~~dGgf~~f~~----~----~~s~wlTa~v~~~l~~a~~~~~--v~~~~i~~a~~~L~ 115 (310)
T 2wy7_A 49 RQGALELIKKGYTQQLA---FRQPSSAFAAFVK----R----APSTWLTAYVVKVFSLAVNLIA--IDSQVLCGAVKWLI 115 (310)
T ss_dssp HHHHHHHHHHHHHHHHT---TBCTTSCBCSSTT----S----CCCHHHHHHHHHHHHHHTTTSC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hcCCCCCcccCCC----C----CccHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence 35777888888888876 5678999973321 1 2235678999999999876532 12367789999998
Q ss_pred HhccCCCCceEe
Q 003187 414 RDMIGPGGEIFS 425 (840)
Q Consensus 414 r~m~~~~Ggfys 425 (840)
++.+.++|.|+.
T Consensus 116 ~~~Q~~dGsf~~ 127 (310)
T 2wy7_A 116 LEKQKPDGVFQE 127 (310)
T ss_dssp HHHBCTTSCBCC
T ss_pred HhhcCCCCcccc
Confidence 646678898864
No 406
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*
Probab=29.15 E-value=3.9e+02 Score=30.06 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHcccccCCccccCCCC---CC--------------cccc
Q 003187 613 LDDYAFLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLDREGGGYFNTTGE---DP--------------SVLL 670 (840)
Q Consensus 613 leDyA~~i~aLl~LYeaTgd-----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~---~~--------------~l~~ 670 (840)
+|--|+.+.-.-.+|+.||| +.|++..+.+.+.+.+.-.....+.|.+.-.. .+ .++-
T Consensus 162 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~~q~~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 241 (463)
T 3p2c_A 162 IDSLCYPLRLAYHYWKTTGDASIFNEEWIQAITNVLKTFKEQQRKDGVGPYKFQRKTERALDTVSNDGLGAPVKPVGLIV 241 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCSHHHHHHHHHHHHHHHHTTCSSSSCSCCCBCCBSCGGGSCHHHHTCSCCCCSSCCB
T ss_pred hhhhhHHHHHHHHHHHhhCChhhhcHHHHHHHHHHHHHHHHHhccCCCCCceEeecCCCCCcccCCCCcCCCcCCCCcee
Confidence 45668889888899999985 46777888888877654422112334442110 01 1111
Q ss_pred ccccCCCCCCC-----ChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHhh
Q 003187 671 RVKEDHDGAEP-----SGNSVSVINLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLKDM 724 (840)
Q Consensus 671 R~k~~~D~a~P-----S~Ns~~a~~LlrL~~lt~~~-~~~~y~~~A~~~l~~~~~~i~~~ 724 (840)
...-+.|+++- .+|..++..|-+++.+...- .+....++++++-+.+...|.++
T Consensus 242 S~FRPSDDa~~~~~~iPsN~~a~v~L~~aaei~~~l~~d~~la~~~~~lA~eIr~gI~k~ 301 (463)
T 3p2c_A 242 SSFRPSDDATTLQFLVPSNFFAVSSLRKAAEILEKVNKKTALSKECKDLAQEVETALKKY 301 (463)
T ss_dssp CSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 11233466663 36888888888877765310 13556666666666666666655
No 407
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=28.77 E-value=1.5e+02 Score=31.76 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=50.3
Q ss_pred hhhcccCCCccCccchHHHHHHHHh-cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHH
Q 003187 112 YLLQHAHNPVDWFAWGEEAFAEARK-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKV 190 (840)
Q Consensus 112 YL~~ha~~~v~W~~~~~eAl~~Ak~-e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~pd~~~~ 190 (840)
|++++...+|.--.. .+.++.-.+ ++++++|-|+.+||..+.. +| .++|..+..++....+. .+++.+.
T Consensus 118 ~i~~~~~~~v~~i~~-~~~~~~~~~~~~~~~vv~ff~~~~~~~~~----~f--~~~A~~~~~~~~F~~~~---~~~~~~~ 187 (367)
T 3us3_A 118 FLLDVLEDPVELIEG-ERELQAFENIEDEIKLIGYFKNKDSEHYK----AF--KEAAEEFHPYIPFFATF---DSKVAKK 187 (367)
T ss_dssp HHHHHHSCSEEECCS-HHHHHHHHHCCSSCEEEEECSCTTCHHHH----HH--HHHHHHHTTTSCEEEEC---CHHHHHH
T ss_pred HHHHhcCCCcEEcCC-HHHHHHHhccCCCcEEEEEECCCCchHHH----HH--HHHHHhhcCCcEEEEEC---CHHHHHH
Confidence 555666566544333 445555555 6789999999998775443 22 24677775554444443 3455555
Q ss_pred HHHHHHHhcCCCCCCcEEEECC
Q 003187 191 YMTYVQALYGGGGWPLSVFLSP 212 (840)
Q Consensus 191 y~~~~~~~~g~~G~P~~vfl~p 212 (840)
| ++.+ |+.+++.+
T Consensus 188 ~--------~v~~-p~i~lf~~ 200 (367)
T 3us3_A 188 L--------TLKL-NEIDFYEA 200 (367)
T ss_dssp H--------TCCT-TCEEEECT
T ss_pred c--------CCCC-CeEEEEcC
Confidence 5 6665 99998877
No 408
>1g9g_A Cellulase CEL48F; processive-endo, hydrolase; 1.90A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1f9o_A* 1fbo_A* 1fce_A* 1fae_A 1fbw_A* 1f9d_A* 2qno_A* 1g9j_A*
Probab=28.11 E-value=4.8e+02 Score=29.94 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccC-CCCceEe
Q 003187 382 QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIG-PGGEIFS 425 (840)
Q Consensus 382 NA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r~m~~-~~Ggfys 425 (840)
||--+.-.++.|-+|||+..+.+.++=+.|++.+..- ++|-|.-
T Consensus 415 QaWsmeRvAeyYY~tGd~~Ak~ildKWv~W~~~~~~~~~~G~f~i 459 (629)
T 1g9g_A 415 QVWSMQRVAELYYKTGDARAKKLLDKWAKWINGEIKFNADGTFQI 459 (629)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSCEECTTSCEEE
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhceEECCCCCEec
Confidence 6777777899999999999999999999999998764 4455653
No 409
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=27.97 E-value=48 Score=26.14 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=26.5
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFD 521 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~ 521 (840)
+..++|+.+|+++..+...+..++++|..
T Consensus 33 s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 33 SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999975
No 410
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=27.79 E-value=1.6e+02 Score=33.46 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=66.5
Q ss_pred CCCCcchhhhcHHHHHHHHHHHHHHHhhhhhhhh----ccc-CCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee
Q 003187 528 RPHLDDKVIVSWNGLVISSFARASKILKSEAESA----MFN-FPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF 602 (840)
Q Consensus 528 ~P~~DdKiltsWNal~I~ALa~A~~~~~d~~~~~----~~~-~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~ 602 (840)
+|-+|-. |+.|.++....+.+.+..... .|. .++. ....-|-..-++.++|+.++...++.| +.. -
T Consensus 141 ~~Q~D~~------g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~v~~~w~~pd~d-lWE-e 211 (492)
T 2fba_A 141 RPQNDGP------ALRAYAISRYLNDVNSLNEGKLVLTDSGDINFS-STEDIYKNIIKPDLEYVIGYWDSTGFD-LWE-E 211 (492)
T ss_dssp CCBTTHH------HHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCS-SHHHHHHHTHHHHHHHHHHHTTSCEEC-TTS-C
T ss_pred Cccccch------hHHHHHHHHHHHHhhccccchhhhhhhcccccc-ccHHHHHHHHHHHHHHHHHhcCCCCCC-CcC-c
Confidence 5777876 998888888776654411000 000 0000 001223478889999998875443322 211 0
Q ss_pred cCCCCCCCCCcchHHHHHHHH---HHHHHHcCC----HHHHHHHHHHHHHHHHH---cccccCCcc
Q 003187 603 RNGPSKAPGFLDDYAFLISGL---LDLYEFGSG----TKWLVWAIELQNTQDEL---FLDREGGGY 658 (840)
Q Consensus 603 ~~g~~~~~~~leDyA~~i~aL---l~LYeaTgd----~~yL~~A~~L~~~~~~~---F~D~~~Ggy 658 (840)
+.| .+..--+.+..|| .++.+..|+ ..|.+.|.+|.+.+.++ ||+++.|.|
T Consensus 212 r~g-----~~~~T~~~~~~AL~~aa~lA~~~g~~~~a~~w~~~ad~i~~~I~~~~~~~w~~~~~~f 272 (492)
T 2fba_A 212 NQG-----RHFFTSLVQQKALAYAVDIAKSFDDGDFANTLSSTASTLESYLSGSDGGFVNTDVNHI 272 (492)
T ss_dssp CEE-----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSTTTCCEETTTTEE
T ss_pred cCC-----CChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEE
Confidence 111 2344445566666 444555665 46888888999999988 998754433
No 411
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=27.28 E-value=60 Score=35.48 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC-eEEEeecCCCCC---CCCCcc
Q 003187 539 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH-RLQHSFRNGPSK---APGFLD 614 (840)
Q Consensus 539 WNal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G-~l~~~~~~g~~~---~~~~le 614 (840)
---++++||..|++.-++ ++|.+.|+++++-|.++...+..| +..- .-|... .....-
T Consensus 96 GDl~IA~ALl~A~~~Wg~----------------~~Y~~~A~~il~~I~~~~v~~~~g~~~~L--lpG~~gF~~~~~~~~ 157 (355)
T 3qxf_A 96 GDVWMAWSLLEAGRLWKE----------------QRYTDIGSALLKRIAREEVVTVPGLGSML--LPGKVGFAEDNSWRF 157 (355)
T ss_dssp HHHHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHHEEEETTTEEEE--CSSSSSSEETTEEEE
T ss_pred HHHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhccccCCCCceee--cCcccCccCCCCCee
Confidence 347789999999999987 789999999999998877654333 2221 111100 001111
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 003187 615 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 648 (840)
Q Consensus 615 DyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~ 648 (840)
+=++++-++++++... +..|.+.+..-.+.+.+
T Consensus 158 nPSY~~p~~~~~fa~~-~~~W~~l~~~~~~lL~~ 190 (355)
T 3qxf_A 158 NPSYLPPTLAQYFTRF-GAPWTTLRETNQRLLLE 190 (355)
T ss_dssp CTTSSCHHHHHHHGGG-CTTHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHHh-CChHHHHHHHHHHHHHH
Confidence 2233445677776665 78899988888887766
No 412
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=27.26 E-value=54 Score=27.88 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=26.6
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFD 521 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~ 521 (840)
+..++|+.+|++...+...+..++++|..
T Consensus 55 s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 55 STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999976
No 413
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=27.11 E-value=1.7e+02 Score=32.69 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH-HhccccCCCeEEEee--cCCCCCCCCC----
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR-RHLYDEQTHRLQHSF--RNGPSKAPGF---- 612 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~-~~l~d~~~G~l~~~~--~~g~~~~~~~---- 612 (840)
-|+.+.|+.-|.+- |= +.+++.++..+++.+||. +.+ +.-.|-|+|-+ +.|++..+..
T Consensus 57 iGf~L~a~~va~e~-G~-------------I~~~e~~~R~~~tL~~l~~~~~-~r~~G~fyhwyd~~Tg~~l~~~~~d~~ 121 (424)
T 4gl3_A 57 SGFGVMAIIVGIER-GF-------------VTREQGAERMLKIVRFLSDKNT-DSYHGMWAHWMNGKTGKTIPFSRKDDG 121 (424)
T ss_dssp HHHHHHHHHHHHHT-TS-------------SCHHHHHHHHHHHHHHHHCTTS-CCBTTBCCSEEETTTCCEECSBTTBCS
T ss_pred HHHHHHHHHHHHHc-CC-------------CCHHHHHHHHHHHHHHHhhccc-cccCCccccceeCCCCCCCCCcCCCCc
Confidence 37888888877651 10 123678899999999995 333 22346666644 2344322222
Q ss_pred --cchHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHH
Q 003187 613 --LDDYAFLISGLLDLYEFGSG-----TKWLVWAIELQNTQD 647 (840)
Q Consensus 613 --leDyA~~i~aLl~LYeaTgd-----~~yL~~A~~L~~~~~ 647 (840)
+=|-++++.+||.+-+.-.+ .+-.++|.+|++.++
T Consensus 122 vStVDtg~L~~gLl~~~~yf~~~~~~e~~l~~~a~~L~~~~d 163 (424)
T 4gl3_A 122 ADIVESAFMFEGLLAAHQYFTKDNPTENRIRGIINNLWRQAE 163 (424)
T ss_dssp EEHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHcCC
Confidence 33889999999999998765 345566666666655
No 414
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=25.80 E-value=2.1e+02 Score=30.78 Aligned_cols=168 Identities=12% Similarity=0.127 Sum_probs=100.6
Q ss_pred CCChhhhcccCCC-ccCccchHHHHHHHHhcCCCEEEEEec--cCChhhhhh-hhcccCCHHHHHHHhcCeEEEEEcCCC
Q 003187 108 EHSPYLLQHAHNP-VDWFAWGEEAFAEARKRDVPIFLSIGY--STCHWCHVM-EVESFEDEGVAKLLNDWFVSIKVDREE 183 (840)
Q Consensus 108 e~SpYL~~ha~~~-v~W~~~~~eAl~~Ak~e~KpI~l~~g~--~wC~wC~~m-e~etf~d~eVa~~ln~~FV~vkvD~ee 183 (840)
+..|+|+.+...| ..|+.+.++-+..|++-|---+|.+|+ .-++.-+.. =--+-+++++.+.+... ...-+
T Consensus 103 ~~~~~llL~G~eP~~~w~~f~~avl~~a~~~gV~~vv~Lggip~~vpHtRP~~V~~~at~~el~~~~~~~-----~~~~~ 177 (325)
T 3e35_A 103 TGAPFLFLSGPEPDVEWERFAAAVGQIVERLGVRLSVSFHGIPMGVPHTRPVGITPHGSRTDLVPGHRSP-----FEEAQ 177 (325)
T ss_dssp TCCEEEEEEEECCSSCHHHHHHHHHHHHHHTTEEEEEEEEEEEESCCTTSCCCEEEEESCGGGCC----------CCCCC
T ss_pred CCCcEEEEECCCCcchHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCceeEEEeCCHHHHHhhccc-----cccCC
Confidence 4568888887766 799999999999999999888888776 223311111 00112556655554421 11122
Q ss_pred Cc-cHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHH--c--HHHHHHHHHH
Q 003187 184 RP-DVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDK--K--RDMLAQSGAF 258 (840)
Q Consensus 184 ~p-d~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~--~--~~~~~~~a~~ 258 (840)
-| -+....+..+ +..|.|...|+-.- | .|+... .....=+.+|+.|.+...- + -+.+.+.|++
T Consensus 178 gp~Gi~glL~~~~----~~~Gi~a~~l~~~v--P----hYla~~--p~P~AA~alL~~L~~~~gl~vp~~~~~L~e~Ae~ 245 (325)
T 3e35_A 178 VPGSAEALVEYRL----AQAGHDVLGVAAHV--P----HYVARS--AYPDAALTVLEAITAATGLVLPGIAHSLRTDAHR 245 (325)
T ss_dssp CCCCHHHHHHHHH----HHTTCCEEEEEEEE--E----GGGTTS--CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHH----HHCCCCeEEEEEEc--C----ccccCC--CCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 33 2333333333 34588887665321 1 243311 1123577888888888654 3 6799999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccCCCCCC
Q 003187 259 AIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGF 303 (840)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGf 303 (840)
+.+++++..... .+.+.+.+.+|.++||..-++-
T Consensus 246 ~e~~i~el~~~~-----------~~E~~~~V~~LE~~yD~~~~~~ 279 (325)
T 3e35_A 246 TQTEIDRQIQEG-----------DEELIALVQGLEHQYDAAAGAE 279 (325)
T ss_dssp HHHHHHHHHHHS-----------CHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHhcc-----------CHHHHHHHHHHHHHHhhhhhhc
Confidence 999998765430 0236788899999999976553
No 415
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=25.49 E-value=1.9e+02 Score=31.51 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=100.1
Q ss_pred CCChhhhcccCCC-ccCccchHHHHHHHHhcCCCEEEEEecc--CCh---hhhhhhhcccCCHHHHHHHhcCeEEEEEcC
Q 003187 108 EHSPYLLQHAHNP-VDWFAWGEEAFAEARKRDVPIFLSIGYS--TCH---WCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (840)
Q Consensus 108 e~SpYL~~ha~~~-v~W~~~~~eAl~~Ak~e~KpI~l~~g~~--wC~---wC~~me~etf~d~eVa~~ln~~FV~vkvD~ 181 (840)
...|+|+.+...| ..|+.+..+-++.|++-|---+|.+|+- -|+ +..+.- +-+++++.+.+...+-.+
T Consensus 140 ~g~~~LlL~G~eP~~~w~~fa~~vl~~a~~~gV~~vvtLgglp~~vphtRp~~V~~--~at~~el~~~~~~~~~~~---- 213 (351)
T 2wam_A 140 IGTPFLLLAGLEPDLKWERFITAVRLLAERLGVRQTIGLGTVPMAVPHTRPITMTA--HSNNRELISDFQPSISEI---- 213 (351)
T ss_dssp TCCEEEEEEEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTTSCCCEEE--EESSGGGGTTSCCCCCSE----
T ss_pred CCCcEEEEECCCChhHHHHHHHHHHHHHHHhCCCEEEEEecccCCCCCccCcceEE--EECCHHHHHhcCCccCcc----
Confidence 4568999888776 6999999999999999998888877663 332 222221 124666655443111111
Q ss_pred CCCcc-HHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHH--HcHHHHHHHHHH
Q 003187 182 EERPD-VDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAF 258 (840)
Q Consensus 182 ee~pd-~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~--~~~~~~~~~a~~ 258 (840)
+-|- +...++..+ +..|.|...|+-. .-.|+... .....=+.+|+.|.+... =+-+.|.+.|++
T Consensus 214 -~gp~GisglL~~~~----~~~Gi~a~~l~~~------vP~Yla~~--pdP~AA~alL~~L~~llgl~ip~~~L~e~Ae~ 280 (351)
T 2wam_A 214 -QVPGSASNLLEYRM----AQHGHEVVGFTVH------VPHYLTQT--DYPAAAQALLEQVAKTGSLQLPLAVLAEAAAE 280 (351)
T ss_dssp -EEECCHHHHHHHHH----HHTTCCEEEEEEE------EEGGGTTS--CCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred -cccccHHHHHHHHH----HHcCCCEEEEEEe------CCccccCC--CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 1222 333443333 3459999998733 11244211 011256777777777654 478899999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccCC
Q 003187 259 AIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSR 299 (840)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~ 299 (840)
+.+.+++.... + +.+.+.+.+|.+++|..
T Consensus 281 ie~~i~el~~~-----------~-~e~~~~V~~LE~qyD~~ 309 (351)
T 2wam_A 281 VQAKIDEQVQA-----------S-AEVAQVVAALERQYDAF 309 (351)
T ss_dssp HHHHHHHHHTT-----------C-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----------C-HHHHHHHHHHHhhhchh
Confidence 99998876532 1 23566778888888874
No 416
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=25.37 E-value=1.2e+02 Score=35.41 Aligned_cols=95 Identities=12% Similarity=-0.049 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCC---------CC
Q 003187 540 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK---------AP 610 (840)
Q Consensus 540 Nal~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~~---------~~ 610 (840)
.++++.||..++... .-...+++.+||++...+. .|.+...++++.+. ..
T Consensus 314 ta~~l~AL~~~G~~~--------------------~~~~~~ka~~~L~~~q~~~-~g~~~~~~~~~s~GgW~f~~~~~~~ 372 (631)
T 2sqc_A 314 TGLAVLALRAAGLPA--------------------DHDRLVKAGEWLLDRQITV-PGDWAVKRPNLKPGGFAFQFDNVYY 372 (631)
T ss_dssp HHHHHHHHHHTTCCT--------------------TCHHHHHHHHHHHHTCCCS-CCGGGGTCTTSCCCCBCSSSSCTTC
T ss_pred HHHHHHHHHHcCCCC--------------------CCHHHHHHHHHHHHhcCCC-CCChhhhcCCCCCCCCccccCCCCC
Confidence 477788887775311 1135667888988876542 23221112222221 12
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccccCCcc
Q 003187 611 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGY 658 (840)
Q Consensus 611 ~~leDyA~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggy 658 (840)
+-.+|-|+++.+|+.+.. ..+..+.+...+..+.+...- .+ +|||
T Consensus 373 p~v~dTA~al~AL~~~~~-~~~~~~~~~l~~a~~wLls~Q-~~-dGgf 417 (631)
T 2sqc_A 373 PDVCDTAVVVWALNTLRL-PDERRRRDAMTKGFRWIVGMQ-SS-NGGW 417 (631)
T ss_dssp CBHHHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHHTC-CT-TSCB
T ss_pred CchHHHHHHHHHHHHcCC-CccchhHHHHHHHHHHHHhhc-CC-CCCC
Confidence 346788999999888764 333445566666666666543 33 3555
No 417
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.15 E-value=97 Score=36.91 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=38.7
Q ss_pred HHHHHHHH---HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC
Q 003187 539 WNGLVISS---FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP 606 (840)
Q Consensus 539 WNal~I~A---La~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~ 606 (840)
-|+++..+ +++.++++|+... .++|.+.|.++.+.+.+++|+++.|.+...+.+|.
T Consensus 456 ~~a~~y~al~~~a~lA~~lG~~~~------------A~~y~~~A~~lk~a~~~~~wd~~~G~y~~~~~~G~ 514 (739)
T 3cih_A 456 EQVLFCRSLETMALCADLVGDKDG------------QQKYEKLASALKAKLEPTFWNNQKQAFVHNCVDGR 514 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHcCChHH------------HHHHHHHHHHHHHHHHHhccCcccCeeEeecCCCC
Confidence 45666554 4555666765211 25799999999999999999987776655455553
No 418
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=25.09 E-value=72 Score=38.34 Aligned_cols=46 Identities=11% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHH---HHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcccccCCccccC
Q 003187 616 YAFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNT 661 (840)
Q Consensus 616 yA~~i---~aLl~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 661 (840)
.|++. ..+.++.+..|+. +|.+.|.++.+.+.++|||++.|.||+.
T Consensus 555 nA~ly~al~~lA~lA~~LG~~e~A~~y~~~A~~lk~ai~~~fWd~e~G~y~D~ 607 (761)
T 3c68_A 555 ASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDV 607 (761)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTEETTTTEECCE
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCccCCEEEEE
Confidence 45444 4455566777875 6889999999999999999988888764
No 419
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A
Probab=25.06 E-value=4.5e+02 Score=29.25 Aligned_cols=112 Identities=11% Similarity=0.069 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHcccccCCccccCCCC---CC--------------cccc
Q 003187 613 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGE---DP--------------SVLL 670 (840)
Q Consensus 613 leDyA~~i~aLl~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~---~~--------------~l~~ 670 (840)
+|--|+.+.-.-.+|+.|||. .|++..+.+.+.+.+.-.....+.|.+.-.. .+ .++-
T Consensus 134 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~~q~~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 213 (427)
T 3qt9_A 134 IDSLCYPVRLIHKYWKESGDETFFNYDIKKAFNMIIDLWRVEQYHREKSDYSFQRLNCSVTDTLSHEGLGTPVTYTGMTW 213 (427)
T ss_dssp THHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHGGGHHHHCCCCCBCSSSCGGGSCHHHHTCSCCCCCSSCC
T ss_pred HhhhHHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCccccCCCCCCCcCCCCcee
Confidence 456689999999999999865 6777777777776654322122334432110 00 1111
Q ss_pred ccccCCCCCCC-----ChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHhh
Q 003187 671 RVKEDHDGAEP-----SGNSVSVINLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLKDM 724 (840)
Q Consensus 671 R~k~~~D~a~P-----S~Ns~~a~~LlrL~~lt~~~-~~~~y~~~A~~~l~~~~~~i~~~ 724 (840)
...-+.|+++- .+|..++..|-+++.+...- .+....++++.+-+.+...|.++
T Consensus 214 S~FRPSDDa~~~~~~iPsN~~a~vaL~~~aei~~~l~~d~~La~~~~~la~eIr~aI~k~ 273 (427)
T 3qt9_A 214 SGFRPSDDACEYGYLIPANMFAVVALRYISEIAEKVYKDEELKEKADSLREEIDNAIEKH 273 (427)
T ss_dssp CSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 11223466663 36888888888887776311 13556677776666666666655
No 420
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=23.83 E-value=37 Score=32.48 Aligned_cols=18 Identities=6% Similarity=-0.112 Sum_probs=14.3
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003187 199 YGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.|+.|+|++|| +|+.+.+
T Consensus 145 ~gv~GtPt~vv---nG~~~~G 162 (186)
T 3bci_A 145 NHIKTTPTAFI---NGEKVED 162 (186)
T ss_dssp TTCCSSSEEEE---TTEECSC
T ss_pred cCCCCCCeEEE---CCEEcCC
Confidence 38999999988 7886653
No 421
>1g9g_A Cellulase CEL48F; processive-endo, hydrolase; 1.90A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1f9o_A* 1fbo_A* 1fce_A* 1fae_A 1fbw_A* 1f9d_A* 2qno_A* 1g9j_A*
Probab=23.12 E-value=2.6e+02 Score=32.09 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=67.9
Q ss_pred hcHHHHHHHHHHH---HHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-e--cCCCCCCC
Q 003187 537 VSWNGLVISSFAR---ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-F--RNGPSKAP 610 (840)
Q Consensus 537 tsWNal~I~ALa~---A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~-~--~~g~~~~~ 610 (840)
-.|=||-.|.+-| .|-++|| ++....-.+-..+++.+..-..+|.+..- . =.|+|+..
T Consensus 409 N~WfG~QaWsmeRvAeyYY~tGd----------------~~Ak~ildKWv~W~~~~~~~~~~G~f~iPs~L~WsGqPdtW 472 (629)
T 1g9g_A 409 NTWFGMQVWSMQRVAELYYKTGD----------------ARAKKLLDKWAKWINGEIKFNADGTFQIPSTIDWEGQPDTW 472 (629)
T ss_dssp TSBTHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHTSCEECTTSCEEEEEEEEEESCCCCC
T ss_pred CCccccchhhHHHHHHHHHhccc----------------HHHHHHHHHHHHHHHhceEECCCCCEecCCcccccCCCCcc
Confidence 3587888886554 5557777 56666777778888887544344544321 0 02443211
Q ss_pred -----------------CCcchH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccc
Q 003187 611 -----------------GFLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 654 (840)
Q Consensus 611 -----------------~~leDy---A~~i~aLl~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~ 654 (840)
..-.|- +.++.+|+-....+||....+.|++|++.+...+.|..
T Consensus 473 ~~~~s~~gN~~lhv~V~~~g~DvGva~s~A~tL~yYAa~sgd~~ak~~Ak~LLD~~W~~~~D~~ 536 (629)
T 1g9g_A 473 NPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSK 536 (629)
T ss_dssp CTTTCCCCCTTCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSEETT
T ss_pred ccCCCCCCCCCeEEEEeecCcchhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhCCCCC
Confidence 111222 56788888888889999999999999999998887754
No 422
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=22.79 E-value=2.1e+02 Score=30.79 Aligned_cols=77 Identities=6% Similarity=0.053 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 003187 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (840)
Q Consensus 335 ~~~~~~a~~TL~~Ma~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLYDNA~Ll~~ya~Ay~~tgd~~y~~~A~~t~~fl~r 414 (840)
+++.+.+...++.+.. +-+-+|||.-|-.+ .--.+..|..+.+++.+-.....+ ..+.+++++||.+
T Consensus 87 ~~~~~~i~~g~~~ll~---~Q~~dGgf~~~~~~--------~~~~~lTa~v~~~l~~a~~~~~v~--~~~i~~a~~~L~~ 153 (367)
T 1hzf_A 87 DHAVDLIQKGYMRIQQ---FRKADGSYAAWLSR--------DSSTWLTAFVLKVLSLAQEQVGGS--PEKLQETSNWLLS 153 (367)
T ss_dssp HHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHGGGTCCC--HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCeeccCCC--------CCcHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHH
Confidence 4566777777777765 44568999633222 113467899999999987664322 4688899999987
Q ss_pred hccCCCCceEe
Q 003187 415 DMIGPGGEIFS 425 (840)
Q Consensus 415 ~m~~~~Ggfys 425 (840)
.+.++|+|+.
T Consensus 154 -~Q~~dG~~~~ 163 (367)
T 1hzf_A 154 -QQQADGSFQD 163 (367)
T ss_dssp -GBCTTSCBCC
T ss_pred -hhccCCCccc
Confidence 5678899875
No 423
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=22.61 E-value=62 Score=31.82 Aligned_cols=18 Identities=11% Similarity=-0.060 Sum_probs=14.6
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003187 199 YGGGGWPLSVFLSPDLKPLMG 219 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~ 219 (840)
.|+.|+|+++| +|+.+.+
T Consensus 159 ~gV~gtPtfvv---nG~~~~G 176 (202)
T 3gha_A 159 MNIQATPTIYV---NDKVIKN 176 (202)
T ss_dssp TTCCSSCEEEE---TTEECSC
T ss_pred cCCCcCCEEEE---CCEEecC
Confidence 48999999998 7887654
No 424
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.28 E-value=86 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=26.0
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFD 521 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~ 521 (840)
+..++|+.+|+++..+...+..+++||..
T Consensus 15 s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 15 TNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 45789999999999999999999999864
No 425
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=21.80 E-value=86 Score=30.76 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=23.3
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHH
Q 003187 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKL 169 (840)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ 169 (840)
..|..++.|.-..|++|+.++..++ +.+.+.
T Consensus 28 ~a~vtvvef~D~~CP~C~~~~~~~~--~~l~~~ 58 (202)
T 3gha_A 28 DAPVTVVEFGDYKCPSCKVFNSDIF--PKIQKD 58 (202)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHTH--HHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHhh--HHHHHH
Confidence 4566788899999999999987543 556543
No 426
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=21.71 E-value=80 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=26.1
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLF 520 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~ 520 (840)
+..++|+.+|+++..+...+..++++|.
T Consensus 32 s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 32 TLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999998
No 427
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=21.66 E-value=44 Score=31.93 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=19.0
Q ss_pred hcCCCEEEEEeccCChhhhhhhhc
Q 003187 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (840)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~e 159 (840)
...|..++.|.-..|+||..++..
T Consensus 9 ~~a~~~i~~f~D~~Cp~C~~~~~~ 32 (186)
T 3bci_A 9 KNGKPLVVVYGDYKCPYCKELDEK 32 (186)
T ss_dssp --CCCEEEEEECTTCHHHHHHHHH
T ss_pred CCCCeEEEEEECCCChhHHHHHHH
Confidence 456777888999999999999764
No 428
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=21.55 E-value=81 Score=30.73 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=22.8
Q ss_pred cCCCCCCcEEEECCCCceecc-ccccCCCCCCCcccHHHHHHHHH
Q 003187 199 YGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (840)
.|+.|+|++||-+ +|+.+.. .+|-+++ .|+++++++.
T Consensus 165 ~gv~g~Pt~~v~~-~~~~~~~~~g~~~~e------~~~~~i~~~~ 202 (208)
T 3kzq_A 165 LGVNSYPSLVLQI-NDAYFPIEVDYLSTE------PTLKLIRERI 202 (208)
T ss_dssp TTCCSSSEEEEEE-TTEEEEECCCSSCSH------HHHHHHHHHH
T ss_pred cCCCcccEEEEEE-CCEEEEeeCCCCCHH------HHHHHHHHHH
Confidence 4899999998744 5555433 3566644 4555555543
No 429
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=21.38 E-value=72 Score=31.64 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003187 187 VDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (840)
Q Consensus 187 ~~~~y~~~~~~~~g~~G~P~~vfl~p~g~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (840)
+.+......+.+ |+.|+|+++| +|+.+.| +.|.+ .|.++|+.+.+
T Consensus 153 v~~~~~~a~~~~-GV~GtPtfvv---ng~~~~G--~~~~e------~l~~~i~~~~~ 197 (205)
T 3gmf_A 153 LAAETDEAINQY-NVSGTPSFMI---DGILLAG--THDWA------SLRPQILARLN 197 (205)
T ss_dssp HHHHHHHHHHHH-CCCSSSEEEE---TTEECTT--CCSHH------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCccCCEEEE---CCEEEeC--CCCHH------HHHHHHHHHhh
No 430
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=21.29 E-value=4e+02 Score=28.67 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC--CCCCCcchH-H
Q 003187 541 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDY-A 617 (840)
Q Consensus 541 al~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~~~fl~~~l~d~~~G~l~~~~~~g~~--~~~~~leDy-A 617 (840)
+..|.+|++++...++ ++|.+++.++.+||+..-.. +|++-..+.+... ..-.|-||- +
T Consensus 77 a~vl~~Larv~~~~~~----------------~~y~~Ai~Rgl~wlL~mQ~~--nGGWpqFdpd~~~Yl~~IpFnDDvta 138 (332)
T 1gxm_A 77 ITEMVFLAEVYKSGGN----------------TKYRDAVRKAANFLVNSQYS--TGALPQFYPLKGGYSDHATFNDNGMA 138 (332)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHCCT--TSCCBSEESCCSGGGGSEECGGGHHH
T ss_pred HHHHHHHHHHhccccc----------------hHHHHHHHHHHHHHHhccCC--CCCccccCCCcccccccCCcchHHHH
Confidence 8889999999987655 78999999999999988764 5665444433211 112344444 4
Q ss_pred HHHHHHHHHHH
Q 003187 618 FLISGLLDLYE 628 (840)
Q Consensus 618 ~~i~aLl~LYe 628 (840)
.+++.|..+.+
T Consensus 139 rvLelL~~~~~ 149 (332)
T 1gxm_A 139 YALTVLDFAAN 149 (332)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 56666666643
No 431
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=21.27 E-value=78 Score=36.20 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=42.5
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003187 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (840)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~pd~~~~y~~~~~~~~g~~G~P~~vfl~p~ 213 (840)
...++++.|.|.... +.--.+++.-+. ...|.|....+...++.+.| |+.++|+.|+++++
T Consensus 154 ~~~~~~vallF~~~~----------s~~~~~~~ldl~~~~~v~v~~v~~~~~~l~~kf--------gV~~~Pslvl~~~n 215 (519)
T 3t58_A 154 RNKADYLALVFERED----------SYLGREVTLDLSQYHAVAVRRVLNTESDLVNKF--------GVTDFPSCYLLLRN 215 (519)
T ss_dssp SCCCSEEEEEEECTT----------CCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHH--------TCCCSSEEEEEETT
T ss_pred cCCCCeEEEEecCCc----------hHHHHHHHHHhhccCCeeEEEecCchHHHHHHc--------CCCCCCeEEEEeCC
Confidence 466788888888543 211133333333 23466665545456666666 99999999999999
Q ss_pred Cceec
Q 003187 214 LKPLM 218 (840)
Q Consensus 214 g~~~~ 218 (840)
|+...
T Consensus 216 Gk~~~ 220 (519)
T 3t58_A 216 GSVSR 220 (519)
T ss_dssp SCEEE
T ss_pred Cceee
Confidence 98654
No 432
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*
Probab=20.81 E-value=6.5e+02 Score=28.02 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=66.6
Q ss_pred cchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHcccccCCccccCCC---CCC--------------cccc
Q 003187 613 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTG---EDP--------------SVLL 670 (840)
Q Consensus 613 leDyA~~i~aLl~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~---~~~--------------~l~~ 670 (840)
+|--|+.+.-.-.+|+.|||. .|++..+.+.+.+.+.-. .+.+.|.+.-. ..+ .++-
T Consensus 133 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~eq~-~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 211 (426)
T 3qry_B 133 VDSLCYPLQLAYLLWKETGETSQFDEIFVAATKEILHLWTVEQD-HKNSPYRFVRDTDRKEDTLVNDGFGPDFAVTGMTW 211 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCSHHHHHHHHHHHHHHHHTTS-GGGCCCCCEECCSCGGGSCHHHHTCSCCCCCSSCC
T ss_pred HhhhHHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHhc-cCCCCceeeecCCCCCccccCCCCCCCcCCCCcee
Confidence 456688998899999999864 677778888877766432 23344443211 001 1111
Q ss_pred ccccCCCCCCC-----ChHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHHHHHHHhh
Q 003187 671 RVKEDHDGAEP-----SGNSVSVINLVRLASIVA---GSKSDYYRQNAEHSLAVFETRLKDM 724 (840)
Q Consensus 671 R~k~~~D~a~P-----S~Ns~~a~~LlrL~~lt~---~~~~~~y~~~A~~~l~~~~~~i~~~ 724 (840)
...-+.|+++- .+|..++..|-+++.+.. -.+++...++++++.+.+...|.++
T Consensus 212 S~FRPSDDa~~~~~~iPsN~~~~v~L~~~aei~~~~~v~~d~~la~~~~~la~eIr~~I~k~ 273 (426)
T 3qry_B 212 SAFRPSDDCCQYSYLIPSNMFAVVVLGYVQEIFAALNLADSQSVIADAKRLQDEIQEGIKNY 273 (426)
T ss_dssp CSBCTTSSBCSSSEEHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 11223456663 378888888888887764 1123556666666666666666554
No 433
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=20.54 E-value=72 Score=26.90 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=26.6
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003187 493 DSSASASKLGMPLEKYLNILGECRRKLFD 521 (840)
Q Consensus 493 ~~~~~a~~~g~~~e~l~~~l~~~r~kL~~ 521 (840)
+..++|+.+|+++..+...+..++++|..
T Consensus 40 s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 40 TLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999975
No 434
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=20.38 E-value=68 Score=30.98 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=21.9
Q ss_pred cCCCCCCcEEEECCCCceec-cccccCCCCCCCcccHHHHHHHH
Q 003187 199 YGGGGWPLSVFLSPDLKPLM-GGTYFPPEDKYGRPGFKTILRKV 241 (840)
Q Consensus 199 ~g~~G~P~~vfl~p~g~~~~-~~tY~p~~~~~~~~~f~~~L~~i 241 (840)
.|+.|+|++|| +|+.+. ..+..|.+ .|.++|+.+
T Consensus 148 ~gv~GtPtfvv---ng~~~v~~~Ga~~~e------~~~~~i~~l 182 (185)
T 3feu_A 148 SGISSVPTFVV---NGKYNVLIGGHDDPK------QIADTIRYL 182 (185)
T ss_dssp HTCCSSSEEEE---TTTEEECGGGCSSHH------HHHHHHHHH
T ss_pred cCCCccCEEEE---CCEEEEecCCCCCHH------HHHHHHHHH
Confidence 39999999998 777543 23344533 566666554
Done!