BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003191
(840 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 540 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHR-INEGKSCLPRNVLIVWAV 598
+V+GP+G YE ++LV GIG++PF +IL + ++ N + + + W
Sbjct: 2 AVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLC 61
Query: 599 KKSNELSLLSN 609
+ ++ ++
Sbjct: 62 RDTHAFEWFAD 72
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 751 DNAQNVGTMAHNDIRKKD--TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPS 808
D +Q H+D +KD T LYG RP++ F + + + + +GV +CGP +
Sbjct: 100 DESQANHFAVHHD-EEKDVITGLKQKTLYG-RPNWDNEFKTIASQHPNTRIGVFLCGPEA 157
Query: 809 LQSSVAKEIRSHS 821
L +++K+ S+S
Sbjct: 158 LAETLSKQSISNS 170
>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
pdb|3QFC|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
Length = 618
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 558 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 469 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 522
Query: 618 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 673
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 523 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 582
Query: 674 GLYVISSTVG 683
Y I + +G
Sbjct: 583 TFYDIVAELG 592
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
Length = 618
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 558 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 469 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 522
Query: 618 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 673
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 523 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 582
Query: 674 GLYVISSTVG 683
Y I + +G
Sbjct: 583 TFYDIVAELG 592
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
Length = 618
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 558 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 469 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 522
Query: 618 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 673
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 523 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 582
Query: 674 GLYVISSTVG 683
Y I + +G
Sbjct: 583 TFYDIVAELG 592
>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH DOMAIN And R457h Mutant)
Length = 458
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 558 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 309 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 362
Query: 618 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 673
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 363 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 422
Query: 674 GLYVISSTVGFI 685
Y I + +G +
Sbjct: 423 TFYDIVAELGAM 434
>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH Domain)
Length = 458
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 558 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 309 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 362
Query: 618 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 673
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 363 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 422
Query: 674 GLYVISSTVGFI 685
Y I + +G +
Sbjct: 423 TFYDIVAELGAM 434
>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr
Length = 637
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 558 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617
+I+V G G++PF+ + + +GK L+ + ++S+E L Y+E +
Sbjct: 488 VIMVGPGTGVAPFIGFIQERAWLRQQGKEV--GETLLYYGCRRSDEDYL----YREELAQ 541
Query: 618 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN----VWS 673
F D + + +RE + L K ++ + G A + G N V +
Sbjct: 542 FHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQN 601
Query: 674 GLYVISSTVG 683
Y I + +G
Sbjct: 602 TFYDIVAELG 611
>pdb|4G1B|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|B Chain B, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|C Chain C, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|D Chain D, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1V|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin
Length = 399
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 553 LMYEN---LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 609
L+++N L+L++ G+G++P LA+L E C P N I W +E +
Sbjct: 267 LIHQNEVPLVLLSSGVGVTPLLAMLE-------EQVKCNP-NRPIYWIQSSYDE---KTQ 315
Query: 610 FYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKT--MSSSIYPVPSGCAMSVLVG 666
+K+ + ++ N++ I V +TEP + L + + +Y S M ++G
Sbjct: 316 AFKKHVDELLAECANVDKII-VHTDTEPLINAAFLKEKSPAHADVYTCGSLAFMQAMIG 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,872,412
Number of Sequences: 62578
Number of extensions: 757287
Number of successful extensions: 1570
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1567
Number of HSP's gapped (non-prelim): 16
length of query: 840
length of database: 14,973,337
effective HSP length: 107
effective length of query: 733
effective length of database: 8,277,491
effective search space: 6067400903
effective search space used: 6067400903
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)