Query 003191
Match_columns 840
No_of_seqs 517 out of 2492
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 18:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02631 ferric-chelate reduct 100.0 2E-126 5E-131 1115.7 57.2 646 29-839 3-698 (699)
2 PLN02292 ferric-chelate reduct 100.0 1E-125 3E-130 1111.4 53.1 647 25-839 6-701 (702)
3 PLN02844 oxidoreductase/ferric 100.0 4E-120 9E-125 1067.7 59.0 655 26-840 2-722 (722)
4 KOG0039 Ferric reductase, NADH 100.0 3.3E-65 7.1E-70 601.6 39.3 565 16-838 15-646 (646)
5 cd06186 NOX_Duox_like_FAD_NADP 100.0 1.5E-29 3.2E-34 259.1 23.7 159 309-613 2-162 (210)
6 COG4097 Predicted ferric reduc 100.0 2.5E-28 5.4E-33 263.1 23.7 214 251-629 148-378 (438)
7 cd06216 FNR_iron_sulfur_bindin 99.9 3.2E-23 6.9E-28 217.7 24.6 181 293-634 2-190 (243)
8 cd06189 flavin_oxioreductase N 99.9 2.5E-23 5.3E-28 215.9 22.8 164 307-635 2-167 (224)
9 cd06212 monooxygenase_like The 99.9 4.1E-23 8.9E-28 215.2 24.0 167 305-635 2-172 (232)
10 cd06215 FNR_iron_sulfur_bindin 99.9 5.3E-23 1.1E-27 213.5 23.3 167 307-635 2-172 (231)
11 PRK08051 fre FMN reductase; Va 99.9 3.6E-23 7.9E-28 216.5 22.0 165 305-634 4-170 (232)
12 cd06213 oxygenase_e_transfer_s 99.9 5.6E-23 1.2E-27 213.7 22.5 166 306-635 3-170 (227)
13 cd06184 flavohem_like_fad_nad_ 99.9 9.7E-23 2.1E-27 214.3 24.2 172 301-635 4-182 (247)
14 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.1E-22 2.4E-27 213.4 22.6 166 308-636 2-172 (241)
15 cd06198 FNR_like_3 NAD(P) bind 99.9 9.8E-23 2.1E-27 210.1 21.6 153 316-632 7-160 (216)
16 cd06197 FNR_like_2 FAD/NAD(P) 99.9 1.6E-22 3.5E-27 210.5 22.5 145 311-606 3-171 (220)
17 cd06211 phenol_2-monooxygenase 99.9 1.5E-22 3.2E-27 212.2 22.0 167 305-635 8-178 (238)
18 cd06210 MMO_FAD_NAD_binding Me 99.9 2E-22 4.4E-27 210.3 22.7 166 305-634 3-176 (236)
19 cd06194 FNR_N-term_Iron_sulfur 99.9 1.2E-22 2.5E-27 210.2 20.6 162 309-635 2-166 (222)
20 cd06191 FNR_iron_sulfur_bindin 99.9 2.7E-22 5.8E-27 208.9 22.6 167 307-636 2-172 (231)
21 cd06217 FNR_iron_sulfur_bindin 99.9 4.2E-22 9.1E-27 207.3 23.4 168 305-634 3-175 (235)
22 cd06190 T4MO_e_transfer_like T 99.9 2.6E-22 5.6E-27 208.9 21.6 165 309-635 2-168 (232)
23 cd06209 BenDO_FAD_NAD Benzoate 99.9 4.4E-22 9.6E-27 206.9 22.5 166 305-636 3-172 (228)
24 cd06187 O2ase_reductase_like T 99.9 4.4E-22 9.6E-27 205.7 22.3 163 309-634 2-166 (224)
25 PRK07609 CDP-6-deoxy-delta-3,4 99.9 8.7E-22 1.9E-26 217.1 22.8 167 304-635 103-273 (339)
26 cd06214 PA_degradation_oxidore 99.9 2.8E-21 6.1E-26 202.1 23.6 168 305-634 3-177 (241)
27 cd00322 FNR_like Ferredoxin re 99.9 2E-21 4.3E-26 199.4 22.0 162 311-635 3-166 (223)
28 cd06188 NADH_quinone_reductase 99.9 1.1E-21 2.3E-26 211.4 20.6 87 538-635 134-220 (283)
29 PRK10684 HCP oxidoreductase, N 99.9 1.8E-21 4E-26 214.3 22.9 166 304-632 10-177 (332)
30 PF08030 NAD_binding_6: Ferric 99.9 5.9E-23 1.3E-27 200.9 9.7 80 555-637 1-80 (156)
31 PRK13289 bifunctional nitric o 99.9 4.2E-21 9.1E-26 215.9 24.1 168 304-634 155-329 (399)
32 PRK11872 antC anthranilate dio 99.9 3.7E-21 8E-26 212.8 22.6 167 304-635 107-278 (340)
33 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 5.7E-21 1.2E-25 211.6 23.0 169 305-635 3-179 (352)
34 cd06196 FNR_like_1 Ferredoxin 99.9 1E-20 2.3E-25 195.1 21.8 158 305-634 2-163 (218)
35 cd06221 sulfite_reductase_like 99.9 1.1E-20 2.3E-25 200.7 22.2 160 309-634 2-166 (253)
36 cd06183 cyt_b5_reduct_like Cyt 99.9 1.4E-20 3E-25 195.4 22.5 167 307-634 2-174 (234)
37 PRK08345 cytochrome-c3 hydroge 99.9 2.3E-20 4.9E-25 202.2 24.6 167 304-635 6-178 (289)
38 cd06218 DHOD_e_trans FAD/NAD b 99.8 7.4E-20 1.6E-24 193.5 22.5 145 309-614 2-148 (246)
39 cd06185 PDR_like Phthalate dio 99.8 1.1E-19 2.3E-24 186.5 22.5 141 310-614 2-148 (211)
40 PRK10926 ferredoxin-NADP reduc 99.8 2.5E-19 5.3E-24 189.9 22.4 168 304-635 5-176 (248)
41 PRK00054 dihydroorotate dehydr 99.8 5.5E-19 1.2E-23 187.1 24.4 143 305-609 6-148 (250)
42 cd06192 DHOD_e_trans_like FAD/ 99.8 3.7E-19 8E-24 187.3 21.6 144 309-613 2-146 (243)
43 PRK05464 Na(+)-translocating N 99.8 2.8E-19 6E-24 202.6 22.1 87 538-635 258-344 (409)
44 PTZ00274 cytochrome b5 reducta 99.8 8E-19 1.7E-23 193.2 23.4 176 303-634 52-234 (325)
45 PRK05713 hypothetical protein; 99.8 3.2E-19 6.9E-24 195.1 20.1 71 305-379 93-165 (312)
46 cd06219 DHOD_e_trans_like1 FAD 99.8 1.1E-18 2.4E-23 184.8 22.4 144 307-614 2-147 (248)
47 cd06220 DHOD_e_trans_like2 FAD 99.8 1.9E-18 4.1E-23 181.1 23.2 66 307-381 2-67 (233)
48 PRK06222 ferredoxin-NADP(+) re 99.8 2E-18 4.4E-23 186.3 23.9 142 306-610 2-145 (281)
49 TIGR01941 nqrF NADH:ubiquinone 99.8 9.3E-19 2E-23 198.1 21.8 87 538-635 254-340 (405)
50 PLN03116 ferredoxin--NADP+ red 99.8 1.5E-18 3.2E-23 189.7 22.5 93 538-635 137-231 (307)
51 PRK08221 anaerobic sulfite red 99.8 3E-18 6.6E-23 183.3 23.8 145 305-614 9-154 (263)
52 cd06208 CYPOR_like_FNR These f 99.8 3E-18 6.5E-23 185.2 22.6 93 538-635 117-210 (286)
53 PRK05802 hypothetical protein; 99.8 3E-18 6.6E-23 188.3 22.9 76 304-380 65-143 (320)
54 COG1018 Hmp Flavodoxin reducta 99.8 5.4E-18 1.2E-22 181.8 23.6 148 304-609 6-157 (266)
55 PF08022 FAD_binding_8: FAD-bi 99.8 1.9E-20 4.1E-25 173.9 -0.4 80 305-386 3-85 (105)
56 cd06182 CYPOR_like NADPH cytoc 99.8 1.8E-17 3.9E-22 177.8 21.1 90 538-634 97-188 (267)
57 PTZ00319 NADH-cytochrome B5 re 99.8 1.4E-17 3.1E-22 181.5 20.0 204 304-670 34-278 (300)
58 COG0543 UbiB 2-polyprenylpheno 99.8 5.6E-17 1.2E-21 172.7 24.1 147 306-614 10-159 (252)
59 PLN03115 ferredoxin--NADP(+) r 99.8 3.1E-17 6.7E-22 183.1 22.6 94 538-636 197-291 (367)
60 cd06200 SiR_like1 Cytochrome p 99.8 2.6E-17 5.7E-22 174.1 20.1 85 538-634 92-177 (245)
61 TIGR02911 sulfite_red_B sulfit 99.8 4.1E-17 9E-22 174.4 19.7 193 305-670 7-201 (261)
62 TIGR03224 benzo_boxA benzoyl-C 99.7 1.3E-16 2.9E-21 180.9 22.2 87 538-634 249-336 (411)
63 PLN02252 nitrate reductase [NA 99.7 6.9E-17 1.5E-21 197.3 20.2 208 303-671 634-867 (888)
64 KOG0534 NADH-cytochrome b-5 re 99.7 7.1E-17 1.5E-21 173.4 17.7 205 304-669 52-263 (286)
65 cd06201 SiR_like2 Cytochrome p 99.7 4.4E-16 9.5E-21 168.9 21.6 74 304-381 46-132 (289)
66 PRK12778 putative bifunctional 99.7 2E-15 4.4E-20 183.2 23.4 142 306-610 2-145 (752)
67 PRK12779 putative bifunctional 99.7 5.9E-15 1.3E-19 182.2 23.3 73 304-379 649-722 (944)
68 cd06193 siderophore_interactin 99.6 2.9E-14 6.2E-19 149.9 20.7 57 538-604 104-160 (235)
69 PRK12775 putative trifunctiona 99.6 3E-14 6.6E-19 177.2 23.2 73 307-382 3-76 (1006)
70 PTZ00306 NADH-dependent fumara 99.6 5E-14 1.1E-18 178.0 19.8 126 538-670 1004-1140(1167)
71 cd06206 bifunctional_CYPOR The 99.4 1.3E-11 2.8E-16 139.2 16.9 94 534-635 209-303 (384)
72 cd06207 CyPoR_like NADPH cytoc 99.3 1.8E-11 3.9E-16 138.0 16.1 91 538-635 213-304 (382)
73 cd06199 SiR Cytochrome p450- l 99.3 2.1E-11 4.4E-16 136.5 13.4 87 538-635 195-283 (360)
74 TIGR01931 cysJ sulfite reducta 99.3 4.2E-11 9.1E-16 142.2 14.9 86 538-634 432-519 (597)
75 cd06203 methionine_synthase_re 99.2 2.2E-10 4.7E-15 130.0 18.5 94 538-636 222-318 (398)
76 COG2871 NqrF Na+-transporting 99.2 8.6E-11 1.9E-15 124.2 13.6 98 527-637 250-347 (410)
77 PRK06214 sulfite reductase; Pr 99.1 5.4E-10 1.2E-14 130.5 14.1 91 534-636 363-454 (530)
78 PF00175 NAD_binding_1: Oxidor 99.1 1.9E-10 4.2E-15 105.6 7.6 48 560-614 1-48 (109)
79 cd06204 CYPOR NADPH cytochrome 99.1 1.6E-09 3.5E-14 123.6 16.5 90 538-634 248-338 (416)
80 cd06202 Nitric_oxide_synthase 99.0 5.1E-09 1.1E-13 119.2 16.5 78 553-635 244-324 (406)
81 PRK10953 cysJ sulfite reductas 98.8 7.9E-09 1.7E-13 122.8 9.5 88 538-636 435-524 (600)
82 PF00970 FAD_binding_6: Oxidor 98.7 5.8E-08 1.2E-12 88.4 9.6 75 306-381 2-81 (99)
83 PRK06567 putative bifunctional 98.7 1.7E-07 3.6E-12 115.1 14.8 77 304-381 791-871 (1028)
84 KOG1924 RhoA GTPase effector D 98.6 9.2E-08 2E-12 111.6 8.6 22 452-473 544-565 (1102)
85 KOG1924 RhoA GTPase effector D 98.3 1.4E-06 3.1E-11 102.0 9.6 7 541-547 622-628 (1102)
86 PF01794 Ferric_reduct: Ferric 98.3 1.8E-06 4E-11 81.2 7.3 44 227-270 78-122 (125)
87 KOG1158 NADP/FAD dependent oxi 98.0 8.4E-05 1.8E-09 88.6 15.5 78 553-635 489-566 (645)
88 COG0369 CysJ Sulfite reductase 97.9 0.00031 6.7E-09 83.6 17.4 72 555-636 440-511 (587)
89 KOG3378 Globins and related he 97.4 0.00088 1.9E-08 71.6 9.7 70 303-372 149-224 (385)
90 KOG1923 Rac1 GTPase effector F 94.7 0.087 1.9E-06 63.4 8.2 7 501-507 324-330 (830)
91 KOG1923 Rac1 GTPase effector F 93.1 0.27 5.9E-06 59.3 8.3 7 538-544 381-387 (830)
92 PRK15319 AIDA autotransporter- 93.1 0.13 2.8E-06 67.1 6.0 7 417-423 1660-1666(2039)
93 PHA03247 large tegument protei 88.1 2.9 6.3E-05 56.8 11.3 6 776-781 3086-3091(3151)
94 KOG3671 Actin regulatory prote 88.1 2.5 5.4E-05 49.2 9.6 18 339-356 243-260 (569)
95 COG2717 Predicted membrane pro 87.8 0.89 1.9E-05 47.8 5.4 72 230-301 118-195 (209)
96 PF05518 Totivirus_coat: Totiv 87.8 2.1 4.5E-05 52.3 9.2 16 504-519 735-750 (759)
97 PRK15313 autotransport protein 86.7 1.1 2.4E-05 55.9 6.1 11 364-374 498-508 (955)
98 KOG3671 Actin regulatory prote 86.5 2.7 5.9E-05 48.9 8.7 13 563-575 491-503 (569)
99 PRK05419 putative sulfite oxid 83.6 1.4 2.9E-05 46.4 4.4 46 230-276 118-164 (205)
100 KOG3895 Synaptic vesicle prote 80.7 6.3 0.00014 44.3 8.3 19 230-251 267-285 (488)
101 KOG0534 NADH-cytochrome b-5 re 75.2 4.1 8.9E-05 45.0 4.9 36 779-815 235-270 (286)
102 KOG1159 NADP-dependent flavopr 74.8 5.5 0.00012 46.7 6.0 66 530-604 409-474 (574)
103 PHA03378 EBNA-3B; Provisional 74.2 41 0.00089 41.0 12.8 12 570-581 821-832 (991)
104 KOG0132 RNA polymerase II C-te 70.5 22 0.00049 43.8 9.8 14 174-187 127-140 (894)
105 COG5178 PRP8 U5 snRNP spliceos 70.3 3.2 7E-05 52.3 2.9 13 688-700 269-281 (2365)
106 PRK15313 autotransport protein 68.7 11 0.00023 47.5 7.0 8 181-188 221-228 (955)
107 KOG1925 Rac1 GTPase effector F 67.0 12 0.00026 43.8 6.4 12 538-549 291-302 (817)
108 KOG1925 Rac1 GTPase effector F 65.7 7.8 0.00017 45.3 4.6 12 779-790 544-555 (817)
109 KOG0391 SNF2 family DNA-depend 62.5 21 0.00046 46.1 7.7 17 504-520 1939-1955(1958)
110 KOG4849 mRNA cleavage factor I 62.1 37 0.00081 38.3 8.8 20 708-727 416-435 (498)
111 PRK09752 adhesin; Provisional 59.8 9.4 0.0002 49.1 4.3 8 538-545 988-995 (1250)
112 KOG3895 Synaptic vesicle prote 58.3 20 0.00044 40.5 6.0 6 541-546 482-487 (488)
113 KOG0132 RNA polymerase II C-te 57.2 53 0.0011 40.7 9.6 12 401-412 573-584 (894)
114 KOG0162 Myosin class I heavy c 57.1 82 0.0018 39.0 11.0 11 501-511 1026-1036(1106)
115 COG2375 ViuB Siderophore-inter 56.9 1.5E+02 0.0033 32.6 12.4 40 538-578 127-166 (265)
116 KOG4672 Uncharacterized conser 55.7 66 0.0014 37.2 9.5 16 472-487 343-358 (487)
117 PF08021 FAD_binding_9: Sidero 53.2 62 0.0013 30.9 7.8 67 307-374 1-91 (117)
118 PF12238 MSA-2c: Merozoite sur 52.5 34 0.00074 36.1 6.3 9 445-453 148-156 (205)
119 COG5178 PRP8 U5 snRNP spliceos 52.0 12 0.00026 47.6 3.3 12 806-817 474-485 (2365)
120 KOG1984 Vesicle coat complex C 48.8 78 0.0017 39.9 9.3 14 715-728 457-470 (1007)
121 KOG2391 Vacuolar sorting prote 48.2 46 0.00099 37.6 6.7 7 347-353 77-83 (365)
122 PRK14950 DNA polymerase III su 44.5 78 0.0017 38.5 8.6 10 290-299 283-292 (585)
123 TIGR02911 sulfite_red_B sulfit 44.2 26 0.00056 37.8 4.1 24 798-821 190-213 (261)
124 PTZ00319 NADH-cytochrome B5 re 44.1 21 0.00045 39.5 3.5 22 798-819 267-289 (300)
125 PF03276 Gag_spuma: Spumavirus 42.5 77 0.0017 38.0 7.7 29 538-567 291-320 (582)
126 PF05308 Mito_fiss_reg: Mitoch 40.9 59 0.0013 35.5 6.1 14 245-258 25-38 (253)
127 PLN02252 nitrate reductase [NA 39.8 33 0.00072 43.8 4.7 40 779-820 838-878 (888)
128 KOG4590 Signal transduction pr 38.9 64 0.0014 37.6 6.3 8 408-415 115-122 (409)
129 KOG4590 Signal transduction pr 38.7 1.6E+02 0.0034 34.5 9.4 8 316-323 31-38 (409)
130 PF01794 Ferric_reduct: Ferric 38.1 52 0.0011 30.5 4.7 47 231-277 1-53 (125)
131 KOG0119 Splicing factor 1/bran 37.4 1.2E+02 0.0025 36.1 8.0 6 189-194 162-167 (554)
132 KOG0559 Dihydrolipoamide succi 35.5 80 0.0017 36.1 6.1 9 330-338 93-101 (457)
133 PF11118 DUF2627: Protein of u 35.2 36 0.00078 30.5 2.8 48 679-728 16-63 (77)
134 PF07174 FAP: Fibronectin-atta 32.8 2.3E+02 0.0049 31.4 8.8 8 541-548 112-119 (297)
135 PF07462 MSP1_C: Merozoite sur 29.1 93 0.002 37.3 5.6 10 489-498 329-338 (574)
136 KOG0307 Vesicle coat complex C 25.5 3.5E+02 0.0076 35.2 9.9 12 570-581 951-962 (1049)
137 PRK14959 DNA polymerase III su 23.8 3.4E+02 0.0073 33.6 9.3 23 779-808 586-608 (624)
138 KOG0391 SNF2 family DNA-depend 23.3 2E+02 0.0044 37.9 7.2 7 119-125 1246-1252(1958)
139 PF14358 DUF4405: Domain of un 22.4 1.3E+02 0.0028 25.4 4.0 28 250-277 33-61 (64)
140 KOG1785 Tyrosine kinase negati 21.5 1.6E+02 0.0034 34.2 5.4 53 434-486 467-545 (563)
141 PF05308 Mito_fiss_reg: Mitoch 21.2 1.5E+02 0.0033 32.4 5.1 13 565-577 235-247 (253)
142 KOG4307 RNA binding protein RB 21.2 3.6E+02 0.0078 33.6 8.5 9 333-341 114-122 (944)
143 KOG2675 Adenylate cyclase-asso 21.0 1E+02 0.0022 36.1 3.8 8 374-381 187-194 (480)
144 PTZ00306 NADH-dependent fumara 20.9 75 0.0016 41.9 3.2 23 798-820 1129-1151(1167)
145 KOG2675 Adenylate cyclase-asso 20.8 88 0.0019 36.6 3.3 7 379-385 199-205 (480)
146 COG2245 Predicted membrane pro 20.2 1.5E+02 0.0033 30.6 4.5 59 39-99 100-160 (182)
No 1
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=2.4e-126 Score=1115.68 Aligned_cols=646 Identities=30% Similarity=0.538 Sum_probs=551.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc-cchhhhHhhhhcccceEecccchhhHHHHHHHHHHHHHHHHHHHhccCccc-
Q 003191 29 ALKWVLKILMWVIFVAWVALIFLYPSE-FGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENF- 106 (840)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 106 (840)
.+||++|++||++|++|+++|||+||+ |+++|++++.+++++|+||.+|++||+|++||++||++||+|||+.++.+.
T Consensus 3 ~~~~~~~~~~~~~f~~~~~~~~~~pt~~~~~~~~~~~~~~~~~t~fg~~g~~~l~~~~p~~~~a~~~~~yl~~~~~~~~~ 82 (699)
T PLN02631 3 NMRSLVKMLMVVLFLGWIFVWIMISTNLFKSKWTPKLAKNLNTTYFGPQGTNLVLLTVPMMFIAVLSCVYLHTQKKPTQP 82 (699)
T ss_pred hHHHHHHHHHHHHHHHHHHHhheeCcHHHHhhhhHHHHhhhcCceeccccchhhhhhhHHHHHHHHHHHheeeccccCcc
Confidence 579999999999999999999999999 999999999899999999999999999999999999999999999988653
Q ss_pred ccccCCCCCcccccccceEeeCccccchHHHHHHHHHHHHHHHhhheeeccccccccccCCCCCchhHHHHHHHhhchhc
Q 003191 107 ERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLD 186 (840)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~lv~gp~gipsr~E~l~I~~fi~l~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~va~RtG 186 (840)
.+|++.++ .|++|++|+||+||+|.+|.+++++|+++++|+++.|++.+|+.-.+++.. .+.|+++++++|+|+|
T Consensus 83 ~~~~~~~~----~~~~p~lv~~~~givs~~e~~~~~~f~~~~~w~~~~y~~~~~~~~~~~~~~-~~~~~~~l~~ig~RtG 157 (699)
T PLN02631 83 QREWKLKR----RMGRVIMVMNPLGIVTATELTFSLLFVALLAWSLYNYLYLSYHVHLHNDDN-AKIWQAKFRAFGLRIG 157 (699)
T ss_pred hhhccccc----cccCcEEeeCCceeeeHHHHHHHHHHHHHHHHHHHHHHHhhheeccCCccc-hhHHHHHHHHHHHHHH
Confidence 33333332 399999999999999999999999999999999999999999723334333 6799999999999999
Q ss_pred cc-------------hhhHHHHHhccchh---------------------hhhHHHHhhhchHHHHHHhhhhcccccchH
Q 003191 187 TM-------------YGWDILRWCSLRFT---------------------GYFMIAWDIQGRLVQELLAWRNIGIANFPG 232 (840)
Q Consensus 187 ii-------------Rnn~L~~LtG~s~T---------------------g~y~i~w~~~~~~~~~~~~W~~~~~~~~~G 232 (840)
++ |||+++|+|||+|. ++|+++|...+.+ .+...|...++.+++|
T Consensus 158 ila~~~lpll~L~a~Rnn~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~-~~~~~w~~~~~~~~~G 236 (699)
T PLN02631 158 YVGHICWAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKL-METFAWNPTYVPNLAG 236 (699)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-hhhhhcccccchHHHH
Confidence 98 99999999999991 1455566666655 3345666666667999
Q ss_pred HHHHHHHHHHHHhchhhhhhccchhHHHhhhhHHHHHHHhhhccccceeeehhhhHHHHHHHHHhhhhccccceEEEEEE
Q 003191 233 VISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSAS 312 (840)
Q Consensus 233 vvAlv~l~lL~vtSl~~iRr~~YElF~~~H~L~ivflv~l~~H~~~~~~~~v~~~ialw~lDRllR~~r~~~~~~vasv~ 312 (840)
++|++++++|+++|++++||++||+|+++|+++++|++++++|++..+.+|+++++++|++||++|.+|.....++++++
T Consensus 237 viA~v~~~lm~~~Sl~~~RRr~YE~F~~~Hillaifiv~~~~H~g~~w~~~~~~~ialw~~DR~lR~~r~~~~~~lv~~~ 316 (699)
T PLN02631 237 TIAMVIGIAMWVTSLPSFRRKKFELFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSAR 316 (699)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHHHHheEEecCCchHHHHHHHHHHHHHHHHHHHHHHhceEEEEEEE
Confidence 99999999999999999999999999999999988889999999876666788999999999999999987778889999
Q ss_pred EecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhcCCCCCC
Q 003191 313 CLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQ 392 (840)
Q Consensus 313 ~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~~~~~~ 392 (840)
.+++|++++++++++.++++||||+||++|..+++|||||||+|+|++++++++|+||++|+||++|++.+....
T Consensus 317 ~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~~g----- 391 (699)
T PLN02631 317 ILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSSI----- 391 (699)
T ss_pred EeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhcCC-----
Confidence 999999999999888899999999999999989999999999999865568999999999999999998763210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 393 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVP 472 (840)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (840)
T Consensus 392 -------------------------------------------------------------------------------- 391 (699)
T PLN02631 392 -------------------------------------------------------------------------------- 391 (699)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCCCcCc
Q 003191 473 PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH 552 (840)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~ 552 (840)
+.++|.+|||||....+.
T Consensus 392 --------------------------------------------------------------~~i~V~VeGPYG~~~~~~ 409 (699)
T PLN02631 392 --------------------------------------------------------------DSLEVSTEGPYGPNSFDV 409 (699)
T ss_pred --------------------------------------------------------------CeeEEEEECCCCCCCCCc
Confidence 234799999999865556
Q ss_pred cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191 553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT 632 (840)
Q Consensus 553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT 632 (840)
.++|+++|||||+||||++|++++++++..+ .++..++|+|+|++|+.+|+.+.+++.+...|+..+++.++++++|||
T Consensus 410 ~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~-~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVT 488 (699)
T PLN02631 410 SRHNSLILVSGGSGITPFISVIRELIFQSQN-PSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYIT 488 (699)
T ss_pred CCCCcEEEEEeCcChHhHHHHHHHHHhcccc-cccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhcCceEEEEEEc
Confidence 7899999999999999999999999976432 222345899999999999998766665444566555667999999999
Q ss_pred CCCCCCCccccccc-ccccccCCCCCCCceeEEecCCchhHHHHHHHHHHHHHHHHHHhhheeeeCCCC-----CcchhH
Q 003191 633 RETEPPLEEGELHK-TMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWY 706 (840)
Q Consensus 633 r~~~~~~~~~~i~~-~~~~~f~P~~sd~~i~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 706 (840)
|++++. +++...+ .+..||+|+++|+|++.++|||+|+|+|++++||++||++++|++++|||||+| +++||+
T Consensus 489 R~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lw~~~~~~~s~~~f~~~~~~~~~y~i~~~~~~~~~~~~~~~ 567 (699)
T PLN02631 489 REDKKP-ETTDDHRLLQTKWFKPQPLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFSY 567 (699)
T ss_pred CCCCCc-ccccccccccccccccCCCCCCceeeecCCccHHHHHHHHHHHHHHHHHHHhhheeEecccCCCCCcccchHH
Confidence 998764 2222222 245889999999999999999999999999999999999999999999999999 678999
Q ss_pred HHHHHHHHhhceeeeccceeeeeehhhhhhcccccc-CCCCccccccc-------cccccccccccccccCccccccccC
Q 003191 707 KGLLFLACMVGGVLIFGGTVIGFWHLWERKSSAREN-YKDDSIEVDNA-------QNVGTMAHNDIRKKDTKSSTNILYG 778 (840)
Q Consensus 707 ~~~~~~~~~~~~~~~~~g~v~~~W~~~~~k~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~vhyg 778 (840)
|++|+++..|++|++ ||.|+.+||.+++++.++|+ ++++++|+++| .+++++|+|+.+++++++.+++|||
T Consensus 568 ~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 646 (699)
T PLN02631 568 RGLWDMFLGSVCIFI-SSSIVFLWRKKQNKEGDKESKKQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHFG 646 (699)
T ss_pred HHHHHHHHHHhheec-cceeeeeechhhccccccchhhccccccCCCCCCCCcccccccchhhhcccccccccceeeeec
Confidence 999999666655444 55555567776665555444 88899986555 2334778888999999999999999
Q ss_pred CCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 003191 779 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 839 (840)
Q Consensus 779 gRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~~c~s~~~~~~~~~~~f~fhs~sF~ 839 (840)
+|||+++|+.+. .++++|||+||||++|+++||++|++ +.++| |||||+|||
T Consensus 647 ~rp~~~~i~~~~---~~~~~vgvlv~gp~~~~~~va~~c~s----~~~~~--~~f~s~sf~ 698 (699)
T PLN02631 647 SKPNLKKILLEA---EGSEDVGVMVCGPRKMRHEVAKICSS----GLAKN--LHFEAISFN 698 (699)
T ss_pred CCCCHHHHHHhc---cCCCceeEEEECcHHHHHHHHHHHhc----CCCcc--eeEEeeccc
Confidence 999999999944 34579999999999999999999999 44566 999999998
No 2
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=1.3e-125 Score=1111.37 Aligned_cols=647 Identities=30% Similarity=0.540 Sum_probs=554.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cchhhhHhhhhcc-cceEecccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 003191 25 LYVSALKWVLKILMWVIFVAWVALIFLYPSE-FGSELTQKFTRAT-SGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISG 102 (840)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (840)
-.++++||++|++||++|++|+++|||+||+ |+++|++++.+++ ++|+||.+|++||+|++||++||++||+|||+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~~~~t~fg~~g~~~~~~~~p~~~~a~~~~~~l~~~~ 85 (702)
T PLN02292 6 ENKDVIKGVIKFLMMVILMGTIVIWIMMPTSTYKTIWLPSMRAKLGKSTYFGAPGVNLLVYMFPMILLACLGCIYLHLKK 85 (702)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHheeeccHHHHhhccHHHHHhccCCceecccchhhHHHhhHHHHHHHHHHHHheecc
Confidence 3578899999999999999999999999999 9999999999999 6999999999999999999999999999999998
Q ss_pred Cccc---ccccCCCCCcccccccceEeeCccccchHHHHHHHHHHHHHHHhhheeeccccccccccCCCCC--chhHHHH
Q 003191 103 EENF---ERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPT--KEQSIWM 177 (840)
Q Consensus 103 ~~~~---~~~~~~~~~~~~~~~~~~lv~gp~gipsr~E~l~I~~fi~l~i~~~~~y~~~~~~~~~~~~~~~--~~~~~~~ 177 (840)
++.+ .++|+.++.++++||+|++|+||+|++||+|.+++++|+++++|+++.|.++++..++++.... .++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~p~lv~~~~G~vt~~e~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (702)
T PLN02292 86 QTTVNQFNREVRKKGGKFGALRRPMLVKGPLGIVTVTEVMFLAMFMALLLWSLANYMYNTFVTITPQSAATDGESLWQAR 165 (702)
T ss_pred cccccchhhcccccccceeeecCcEEeeCCcceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccccchHHHHHH
Confidence 7632 2333346678999999999999999999999999999999999999999999998876654432 4578999
Q ss_pred HHHhhchhccc-------------hhhHHHHHhccchh---------------------hhhHHHHhhhchHHHHHHhhh
Q 003191 178 LELTGLRLDTM-------------YGWDILRWCSLRFT---------------------GYFMIAWDIQGRLVQELLAWR 223 (840)
Q Consensus 178 l~~va~RtGii-------------Rnn~L~~LtG~s~T---------------------g~y~i~w~~~~~~~~~~~~W~ 223 (840)
++++|||+|++ |||+|+|+|||+|. .+|+++|...+.+ .++..|.
T Consensus 166 l~~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~-~~~~~w~ 244 (702)
T PLN02292 166 LDSIAVRLGLVGNICLAFLFYPVARGSSLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQV-SQMLEWD 244 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhcc
Confidence 99999999996 99999999999991 1555666666655 4556676
Q ss_pred hcccccchHHHHHHHHHHHHHhchhhhhhccchhHHHhhhhHHHHHHHhhhccccceeeehhhhHHHHHHHHHhhhhccc
Q 003191 224 NIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSR 303 (840)
Q Consensus 224 ~~~~~~~~GvvAlv~l~lL~vtSl~~iRr~~YElF~~~H~L~ivflv~l~~H~~~~~~~~v~~~ialw~lDRllR~~r~~ 303 (840)
+.+..+++|++|++++++|+++|++++||++||+|+++|++++++++++++|++..+.+++++++++|++||++|.+|.+
T Consensus 245 ~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~~YE~F~~~HiL~~v~~v~~~~H~~~~~~~~~~~~i~l~~~DR~lR~~r~~ 324 (702)
T PLN02292 245 RTGVSNLAGEIALVAGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRFLQSR 324 (702)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhHHHHhcccHhHHHHHHHHHHHHeeeehhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666799999999999999999999999999999999999998889999999765555688999999999999999998
Q ss_pred cceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYI 383 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l 383 (840)
.++++++++.+++|++++++++++.++++||||+|+++|..+.+|+|||||+|+|++++++++++||++|+||++|++.+
T Consensus 325 ~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l 404 (702)
T PLN02292 325 NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHML 404 (702)
T ss_pred cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhC
Confidence 88999999999999999999998888999999999999988899999999999985456889999999999999999876
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 384 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP 463 (840)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (840)
...++
T Consensus 405 ~~gd~--------------------------------------------------------------------------- 409 (702)
T PLN02292 405 SSSDQ--------------------------------------------------------------------------- 409 (702)
T ss_pred CCCCc---------------------------------------------------------------------------
Confidence 32110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecc
Q 003191 464 PQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG 543 (840)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeG 543 (840)
. ..++|.|||
T Consensus 410 -----------------------------------------------------------------i-----~~~~V~VeG 419 (702)
T PLN02292 410 -----------------------------------------------------------------I-----DRLAVSVEG 419 (702)
T ss_pred -----------------------------------------------------------------c-----ccceEEEEC
Confidence 0 234799999
Q ss_pred CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc-CCCCCCC
Q 003191 544 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI-CPFFSDK 622 (840)
Q Consensus 544 PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~-~~~~~~~ 622 (840)
|||....+..++++++|||||+||||+++++++++++.++ ..+..++|+|+|++|+.+|+.+++++.+|+. +....++
T Consensus 420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~-~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~ 498 (702)
T PLN02292 420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSST-ETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSF 498 (702)
T ss_pred CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhcccc-ccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhc
Confidence 9998765567789999999999999999999999876422 2234578999999999999999888887763 1112245
Q ss_pred CceEEEEEEeCCCCCCCcccccccccc--cccCCCCCCCceeEEecCCchhHHHHHHHHHHHHHHHHHHhhheeeeCCCC
Q 003191 623 LNLETFIYVTRETEPPLEEGELHKTMS--SSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN 700 (840)
Q Consensus 623 ~~l~I~iyVTr~~~~~~~~~~i~~~~~--~~f~P~~sd~~i~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (840)
.++++++|+|++++++.+.+..+++++ .+++|+++|++++.+|||++|+|+|++++||++||++++|++++|||||+|
T Consensus 499 ~~~~i~iyvTr~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w~~~~~~~s~~~f~~~~~~~~~y~~~~~~ 578 (702)
T PLN02292 499 IDIQIKAFVTREKEAGVKESTGNMNIIKTLWFKPNLSDQPISPILGPNSWLWLAAILSSSFLIFIIIIAIITRYHIYPID 578 (702)
T ss_pred CCceEEEEEeCCCCCCCcccccchhhhhhhcCCCCCCCCceEEEeCCCchHHHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 789999999999877654443445544 457888889999999999999999999999999999999999999999999
Q ss_pred Ccc----hhHHHHHHHHHhhceeeeccceeeeeehhhhhhcccc-ccCCCCccccccccccccccccccccccCcccccc
Q 003191 701 IHS----WWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSAR-ENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNI 775 (840)
Q Consensus 701 ~~~----~~~~~~~~~~~~~~~~~~~~g~v~~~W~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 775 (840)
.+. ||+|++|+++|||+||++ ||.|+.+| +||++++ |.+|.|+.| +.+|.++.+++++++.+++
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~w---~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 647 (702)
T PLN02292 579 QNSNKYTLAYKSLIYLLVISISVVA-TSTAAMLW---NKKKYYKKSSQQVDNVD-------SPREIESSPQQLLVQRTNI 647 (702)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhh-hhhHHHhh---cccccccchhccccccc-------cccccccCcccccccceee
Confidence 555 999999999999999999 55555444 5565555 666666553 3477888899999999999
Q ss_pred ccCCCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 003191 776 LYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 839 (840)
Q Consensus 776 hyggRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~~c~s~~~~~~~~~~~f~fhs~sF~ 839 (840)
|||+|||+++|+.++. +++|||+||||++|+++||++|++ +.++| |||||+|||
T Consensus 648 ~~g~rp~~~~i~~~~~----~~~vgvlv~gp~~~~~~va~~c~s----~~~~~--~~~~s~sf~ 701 (702)
T PLN02292 648 HYGERPNLNKLLVGLK----GSSVGVLVCGPKKMRQKVAKICSS----GLAEN--LHFESISFS 701 (702)
T ss_pred eccCCCCHHHHHHhcC----CCceeEEEECcHHHHHHHHHHHhc----CCCcc--eeEEeeccc
Confidence 9999999999996554 469999999999999999999999 44566 999999998
No 3
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=3.9e-120 Score=1067.65 Aligned_cols=655 Identities=30% Similarity=0.552 Sum_probs=549.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cchhhhHhhhhcccceEecccchhhHHHHHHHHHHHHHHHHHHHhccCc
Q 003191 26 YVSALKWVLKILMWVIFVAWVALIFLYPSE-FGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEE 104 (840)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (840)
.++++||+||++||++|+||+++|||+||+ |+++|++. .+.+++|+||+||++||+|++||++||++||+|||+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pt~~~~~~~~~~-~~~~~~t~fg~~g~~~~~~~~p~~~~a~~~~~yl~~~~~~ 80 (722)
T PLN02844 2 AKALTLLVLKLLMILIFAGWIALWILKPTNLWTRKWKQA-EDSARHTVFGYYGLNFAVYTFPPIALAIIGLVYLSLLSQE 80 (722)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHheeeCCHHHHhhhhhH-HhcccCceecccchhhHhHhhHHHHHHHHHHHheeecccc
Confidence 478899999999999999999999999999 88888884 5557899999999999999999999999999999999886
Q ss_pred ccccccCCCCCcccccccceEeeCccccchHHHHHHHHHHHHHHHhhheeeccccccccccCCCCCchhHHHHHHHhhch
Q 003191 105 NFERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLR 184 (840)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~lv~gp~gipsr~E~l~I~~fi~l~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~va~R 184 (840)
+. +++.++.+...||+|++|+||+||+|.+|.+++++|+++++|.++.|++++|+.+++.+....+.|+.++..+|+|
T Consensus 81 ~~--~~~~~~~~~~~~~~p~lv~~~~givs~~e~~~~~~f~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~R 158 (722)
T PLN02844 81 PH--RRRGARSATIGVSNPVIVNSFIGILSCLEILAVLLFFLFLAWTFYARISNDFKKLMPVKSLNLNLWQLKYLRVATR 158 (722)
T ss_pred Cc--cccccccccccccCcEEecCCceeeeHHHHHHHHHHHHHHHHHHHHHHHhhhhhhCccccccchhHHHHHHHHHHH
Confidence 63 2222333455579999999999999999999999999999999999999999988776554456899999999999
Q ss_pred hccc-------------hhhHHHHHhccchh----------------h-----hhHHHHhhhchHHHHHHhhhhcccccc
Q 003191 185 LDTM-------------YGWDILRWCSLRFT----------------G-----YFMIAWDIQGRLVQELLAWRNIGIANF 230 (840)
Q Consensus 185 tGii-------------Rnn~L~~LtG~s~T----------------g-----~y~i~w~~~~~~~~~~~~W~~~~~~~~ 230 (840)
+|++ |||++.++|||+|. + +|+++|...+....++..|..+...++
T Consensus 159 ~G~la~~~Lpll~llv~Rnn~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~~~~~w~~~~~~~~ 238 (722)
T PLN02844 159 FGLLAEACLALLLLPVLRGLALFRLLGIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEIWKWQKTGRIYL 238 (722)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhccCcchhh
Confidence 9998 99999999999991 1 444567777666556667866655578
Q ss_pred hHHHHHHHHHHHHHhchhhhhhccchhHHHhhhhHHHHHHHhhhccccceeeehhhhHHHHHHHHHhhhhccccceEEEE
Q 003191 231 PGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLS 310 (840)
Q Consensus 231 ~GvvAlv~l~lL~vtSl~~iRr~~YElF~~~H~L~ivflv~l~~H~~~~~~~~v~~~ialw~lDRllR~~r~~~~~~vas 310 (840)
+|++|++++++|+++|++++||++||+|+++|+++++|++++++|+.....+|+++++++|++||++|.++.+....+.+
T Consensus 239 ~G~IAlv~l~iL~itSl~~iRR~~YElF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRllR~~~s~~~~~vvs 318 (722)
T PLN02844 239 AGEIALVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSRPETCILS 318 (722)
T ss_pred hHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHhheEEEeeeEEEEE
Confidence 99999999999999999999999999999999999989999999998766678999999999999999998876666778
Q ss_pred EEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhcCCCC
Q 003191 311 ASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESD 390 (840)
Q Consensus 311 v~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~~~~ 390 (840)
++.++++++++++++++.++|+||||+||++|..+++|||||||+|+|+++++.+++.||+.||||++|++.+....+.+
T Consensus 319 ~~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g 398 (722)
T PLN02844 319 ARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSE 398 (722)
T ss_pred EEEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCC
Confidence 88899999999999988899999999999999989999999999998765568899999999999999999875432110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 391 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPP 470 (840)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (840)
.
T Consensus 399 ~------------------------------------------------------------------------------- 399 (722)
T PLN02844 399 T------------------------------------------------------------------------------- 399 (722)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCCCc
Q 003191 471 VPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 550 (840)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~ 550 (840)
... .++++.||||||....
T Consensus 400 --------------------------------------------------------~~~-----~~~~v~VeGPYG~~s~ 418 (722)
T PLN02844 400 --------------------------------------------------------NQM-----NCIPVAIEGPYGPASV 418 (722)
T ss_pred --------------------------------------------------------Ccc-----cceEEEEECCccCCCC
Confidence 000 2358999999998766
Q ss_pred CccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEE
Q 003191 551 YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIY 630 (840)
Q Consensus 551 ~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iy 630 (840)
+..++++++|||||+||||++|+++++.++.+. +.+.+++|+|+|++|+.+|+.|++++.+++... ..+..++++++|
T Consensus 419 ~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~-~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~-~~~~~~lkl~iy 496 (722)
T PLN02844 419 DFLRYDSLLLVAGGIGITPFLSILKEIASQSSS-RYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQ-SSNQLNLKLKVF 496 (722)
T ss_pred CccCCCeEEEEEcCcCHHHHHHHHHHHHhcccc-ccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHh-HHHhcCceEEEE
Confidence 667899999999999999999999999875421 123457899999999999999999887654311 123357899999
Q ss_pred EeCCCCCCC------cccccccccccccCCCCCCCceeEEecCCchhHHHHHHHHHHHHHHHHHHhhheeeeCCCCCc--
Q 003191 631 VTRETEPPL------EEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIH-- 702 (840)
Q Consensus 631 VTr~~~~~~------~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 702 (840)
|||++.+.. ++++..++ .++.|+ ++.+.+||||+|+|+|+++++|++||+++++++++|||++.+.+
T Consensus 497 VTRE~~~~~rl~~~i~~~~~~~~--~~~~~~---~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~~~~~~~i~~~~~~~~ 571 (722)
T PLN02844 497 VTQEEKPNATLRELLNQFSQVQT--VNFSTK---CSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFIPSEHKSHS 571 (722)
T ss_pred ECCCCCCCCchhhHhhccchhhh--cCCCCC---CCceEEeCCCchHHHHHHHHHHHHHHHHHHHHHheEEecccccccc
Confidence 999876532 22233333 556554 55599999999999999999999999999999999999444333
Q ss_pred ------------c-----hhHHHHHHHHHhhceeeeccceeeeeehhhhhhcccccc-CCCCcccccccccccccccccc
Q 003191 703 ------------S-----WWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSAREN-YKDDSIEVDNAQNVGTMAHNDI 764 (840)
Q Consensus 703 ------------~-----~~~~~~~~~~~~~~~~~~~~g~v~~~W~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 764 (840)
+ ||++++|+++||++||++ ||.|+.+|+ |||++++.+. .+++.++. +.+.++
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~---- 641 (722)
T PLN02844 572 GVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITC-STFVAIILR-WRRLKKEIPRVSQKQGIKP----EEGSME---- 641 (722)
T ss_pred chhcccccccccccCCCchHHHHHHHHHHHHHHhee-cceEeEeee-ccccccCCccccccccCCC----CCcccc----
Confidence 3 999999999999999999 999999999 8888776655 34444432 112222
Q ss_pred ccccCccccccccCCCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHHHHHhccc-----CCCCCCceEEEEecccC
Q 003191 765 RKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSL-----MRECHDPIFHFHSHSFD 839 (840)
Q Consensus 765 ~~~~l~~~~~vhyggRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~~c~s~~~-----~~~~~~~~f~fhs~sF~ 839 (840)
.+.++.+.+++|||+|||+++||++++++.++++|||+||||++|+++||++||++|. .+.+.++.|||||+|||
T Consensus 642 ~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~hs~~f~ 721 (722)
T PLN02844 642 KRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNFT 721 (722)
T ss_pred ccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceeeeecccC
Confidence 4456778899999999999999999999999999999999999999999999999997 45556788999999999
Q ss_pred C
Q 003191 840 L 840 (840)
Q Consensus 840 l 840 (840)
|
T Consensus 722 l 722 (722)
T PLN02844 722 L 722 (722)
T ss_pred C
Confidence 7
No 4
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-65 Score=601.65 Aligned_cols=565 Identities=26% Similarity=0.425 Sum_probs=426.7
Q ss_pred CccccccchhHHHH-------HHHHHHHHHHHHHHHHHHHhhhcccc-cchhhhHhhhhcccceEecccchhhHHHHHHH
Q 003191 16 DAVHYKQTPLYVSA-------LKWVLKILMWVIFVAWVALIFLYPSE-FGSELTQKFTRATSGTIFGITGSMFLIFSGPI 87 (840)
Q Consensus 16 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~~ 87 (840)
+-+...++.+.-.. .+.+.+++|..++++| ..|++.+++ +...|.+..+.+-.+ +++..+..+++...|.
T Consensus 15 ~~d~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~ll~~~~~ 92 (646)
T KOG0039|consen 15 SYDDKLQTFFDMYDKGDGKLTEEEVRELIMSSISANW-LSLIKKQTEEYAALIMEELDPDHKG-YITNEDLEILLLQIPT 92 (646)
T ss_pred ChhHHHHHHHHHHhhhcCCccHHHHHHHHHHHHHhhh-hhhhhhhhhHHHHHhhhhccccccc-eeeecchhHHHHhchH
Confidence 33444455544433 5679999999999999 777777777 999999997665545 9999999999999999
Q ss_pred HHHHHHHHHHHHhccCcccccccCC-CCCcccccccceEeeCccccchHHHHHHHHHHHHHHHhhheeecccc------c
Q 003191 88 AIIAFLAIAHLIISGEENFERKKAP-KHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRN------I 160 (840)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~lv~gp~gipsr~E~l~I~~fi~l~i~~~~~y~~~~------~ 160 (840)
..++..++.+ ....... ...+.. +.+..+.++++..+....+...+.+.+++.+++++.+|.+..|.+.+ +
T Consensus 93 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~~~~~y~~~~~~~~~g~ 170 (646)
T KOG0039|consen 93 LLFAILLSFA-NLSLLLS-QPLKPTRRKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTWRFLQYVYLGTRHILGL 170 (646)
T ss_pred HHHHHHHHHH-HHHhhhc-cccccccccccchheeeeeeeeccceEeeeeehHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 9999888886 2221111 111211 22345667777777778899999999999999999999887766554 1
Q ss_pred cccccCCC-CC--chhHHHHHHHhhchhccc-------------hhhHHHHHhccchh--------------------h-
Q 003191 161 SLLSEFRI-PT--KEQSIWMLELTGLRLDTM-------------YGWDILRWCSLRFT--------------------G- 203 (840)
Q Consensus 161 ~~~~~~~~-~~--~~~~~~~l~~va~RtGii-------------Rnn~L~~LtG~s~T--------------------g- 203 (840)
...-.... .. .......+..+++|.|++ ||+.+++++|++++ +
T Consensus 171 ~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H~w~~~~~~~~~~ih~~ 250 (646)
T KOG0039|consen 171 CLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNFFPFLVHGL 250 (646)
T ss_pred eeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 21111111 11 124456667788888887 99999999999992 0
Q ss_pred hhHHHHhhhchHHHHHHhhhhcccccchHHHHHHHHHHHHHhchhhhhhccchhHHHhhhhHHHHHHHhhhccc-----c
Q 003191 204 YFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVG-----D 278 (840)
Q Consensus 204 ~y~i~w~~~~~~~~~~~~W~~~~~~~~~GvvAlv~l~lL~vtSl~~iRr~~YElF~~~H~L~ivflv~l~~H~~-----~ 278 (840)
.|+++|...+.+..+...|......+++|+++++++++|+++|++++||+.||.|+++|++++++++++++|.. .
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~~~e~F~ytH~l~~v~~illi~hg~~~~~~~ 330 (646)
T KOG0039|consen 251 EYTISLASELFFLPKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRRFYEAFWYTHHLYIVFYILLIIHGGFRLLGT 330 (646)
T ss_pred HHHHHHHHHhcccchhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 34455666554323344566566667999999999999999999999999999999999999988888888886 3
Q ss_pred ceeeehhhhHHHHHHHHHhhhhccccceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCC
Q 003191 279 FVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSP 358 (840)
Q Consensus 279 ~~~~~v~~~ialw~lDRllR~~r~~~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp 358 (840)
.|. |+..++++|++||++|+.|++.+++++++..+|+|+++|+++||+.++|+||||+|+++|+++.||||||||+|+|
T Consensus 331 ~w~-~~~~p~~ly~~dR~~r~~r~~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp 409 (646)
T KOG0039|consen 331 TWM-YIAVPVLLYILDRILRFLRSQKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAP 409 (646)
T ss_pred chh-HHHHHHHHHHHHHHHHHHHHhcCceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCC
Confidence 333 3334477999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEecCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCC
Q 003191 359 LEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV 438 (840)
Q Consensus 359 ~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (840)
+ +++++++||++||||++|++...+.++.. +
T Consensus 410 ~--dd~lsvhIk~~g~wT~~L~~~~~~~~~~~-~---------------------------------------------- 440 (646)
T KOG0039|consen 410 E--DDFLSVHIKALGDWTEKLRNAFSEVSQPP-E---------------------------------------------- 440 (646)
T ss_pred C--CCEEEEEEEecCcHHHHHHHHHhhhcccc-c----------------------------------------------
Confidence 4 58999999999999999999987422100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCC
Q 003191 439 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQG 518 (840)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 518 (840)
.
T Consensus 441 ----------------------------------------------~--------------------------------- 441 (646)
T KOG0039|consen 441 ----------------------------------------------S--------------------------------- 441 (646)
T ss_pred ----------------------------------------------c---------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCC----------CCC
Q 003191 519 SPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGK----------SCL 588 (840)
Q Consensus 519 ~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~----------~~~ 588 (840)
+ ... ..+++.||||||..+++..+||+++||+||+|+||++|++++++++.+.++ ...
T Consensus 442 -----~--~~~-----~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~ 509 (646)
T KOG0039|consen 442 -----D--KSY-----PFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLK 509 (646)
T ss_pred -----c--ccc-----cCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccce
Confidence 0 000 234899999999999889999999999999999999999999999875443 235
Q ss_pred CceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCCCCCCcccccccccccccCCCCCCCceeEEecCC
Q 003191 589 PRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTG 668 (840)
Q Consensus 589 ~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~~~~~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~ 668 (840)
.++++++|.+|+..+++|+.+++.++... ....-++++.|+|+..+..+... +
T Consensus 510 ~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~--~~~~~~e~~~~~t~~~~~~d~~~----~--------------------- 562 (646)
T KOG0039|consen 510 LKKVYFYWVTREQRSFEWFKGLLTEVEEY--DSSGVIELHNYVTSSYEEGDARS----A--------------------- 562 (646)
T ss_pred ecceeEEEEeccccchHHHHHHHHHHHHH--HhcCCchhheehhHhHhhhhhhh----H---------------------
Confidence 68899999999999999999998876421 12233789999998654322111 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhheeeeCCCCCcchhHHHHHHHHHhhceeeeccceeeeeehhhhhhccccccCCCCcc
Q 003191 669 NNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSI 748 (840)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~W~~~~~k~~~~~~~~~~~~ 748 (840)
.+.+ .++...++ + .+++
T Consensus 563 ----------------------------------------~~~~--------------------~~~~~~~~-~--~~di 579 (646)
T KOG0039|consen 563 ----------------------------------------LIQM--------------------VQKLLHAK-N--GVDI 579 (646)
T ss_pred ----------------------------------------HHHH--------------------HHhhcccc-c--Cccc
Confidence 0000 01111111 0 0011
Q ss_pred ccccccccccccccccccccCccccccccCCCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHHHHHhcccCCCCCC
Q 003191 749 EVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHD 828 (840)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~~~vhyggRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~~c~s~~~~~~~~~ 828 (840)
+ +++ .+.+|+ |||||++++++.++.+++.+||||+|||++|.+++++.|++.+.. ..
T Consensus 580 ~-----------------~g~--~~~~~~-gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~---~~ 636 (646)
T KOG0039|consen 580 V-----------------TGL--KVETHF-GRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSS---TA 636 (646)
T ss_pred c-----------------ccc--eeeeeC-CCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccc---cC
Confidence 0 111 135566 799999999999999988789999999999999999999998865 33
Q ss_pred ceEEEEeccc
Q 003191 829 PIFHFHSHSF 838 (840)
Q Consensus 829 ~~f~fhs~sF 838 (840)
+.|+||+|||
T Consensus 637 ~~~~f~~E~F 646 (646)
T KOG0039|consen 637 TRFEFHKENF 646 (646)
T ss_pred ceeeeeeccC
Confidence 4599999998
No 5
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.97 E-value=1.5e-29 Score=259.14 Aligned_cols=159 Identities=30% Similarity=0.543 Sum_probs=129.8
Q ss_pred EEEEEec-CceEEEEEeCCCCcccCCCcEEEEEEcCC-CCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhc
Q 003191 309 LSASCLP-CGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK 386 (840)
Q Consensus 309 asv~~Lp-~~vvrLtI~~p~~~~~~PGQhvfL~vP~i-s~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~ 386 (840)
++++.++ +++++++++.+..++++||||++|++|.. +.+|+|||||+|.+.++++.++|+||..+|+|+++.+.+...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 5677888 99999999988888999999999999987 788999999999986435799999999977777777766432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 466 (840)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (840)
.+.
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (210)
T cd06186 82 PGG----------------------------------------------------------------------------- 84 (210)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcC
Q 003191 467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 546 (840)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG 546 (840)
. ...++.|+||||
T Consensus 85 ------------------------------------------------------------~-------~~~~v~v~GP~G 97 (210)
T cd06186 85 ------------------------------------------------------------G-------VSLKVLVEGPYG 97 (210)
T ss_pred ------------------------------------------------------------C-------ceeEEEEECCCC
Confidence 0 223789999999
Q ss_pred CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHH
Q 003191 547 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE 613 (840)
Q Consensus 547 ~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~e 613 (840)
........+++++|||||+||||+++++++++++.++ ....++|+|+|++|+.+++.|+.+++++
T Consensus 98 ~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~--~~~~~~v~l~w~~r~~~~~~~~~~~l~~ 162 (210)
T cd06186 98 SSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK--TSRTRRVKLVWVVRDREDLEWFLDELRA 162 (210)
T ss_pred CCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc--cCCccEEEEEEEECCHHHhHHHHHHHHh
Confidence 9863456899999999999999999999999876421 1135689999999999998898887753
No 6
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.5e-28 Score=263.09 Aligned_cols=214 Identities=23% Similarity=0.280 Sum_probs=157.4
Q ss_pred hhccchhHHHhhhhHHHHHHHhhhccccc--e-------eeehhhh-HHHHHH----HHHhhhhcc-ccceEEEEEEEec
Q 003191 251 RKHFFQLFFYTHQLYVVFVVFLALHVGDF--V-------FSMAAGG-IFLFIL----DRFLRFCQS-RRTVDVLSASCLP 315 (840)
Q Consensus 251 Rr~~YElF~~~H~L~ivflv~l~~H~~~~--~-------~~~v~~~-ialw~l----DRllR~~r~-~~~~~vasv~~Lp 315 (840)
-+..||.|.++|.++++..++..+|.... + ..|...+ .+++++ ..+.+..++ +....++..+..+
T Consensus 148 ~~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~ 227 (438)
T COG4097 148 LNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGN 227 (438)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcC
Confidence 35699999999999998889999997421 1 1121111 122222 222233333 3556777778888
Q ss_pred CceEEEEEeCCCCcccCCCcEEEEEEcC-CCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhcCCCCCCCC
Q 003191 316 CGTVELVLSKPANLRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVG 394 (840)
Q Consensus 316 ~~vvrLtI~~p~~~~~~PGQhvfL~vP~-is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~~~~~~~~ 394 (840)
.+++++++...+.+-++||||+||.++. -++.-.||||||++.+ ..+++|.||+.||+||.|++.++.
T Consensus 228 ~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~--~sel~FsIK~LGD~Tk~l~dnLk~--------- 296 (438)
T COG4097 228 VDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSHE--GSELRFSIKALGDFTKTLKDNLKV--------- 296 (438)
T ss_pred cchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeCCC--CceEEEEehhhhhhhHHHHHhccC---------
Confidence 8899999998888889999999999984 3456789999999875 358999999999999999875421
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPP 474 (840)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (840)
T Consensus 297 -------------------------------------------------------------------------------- 296 (438)
T COG4097 297 -------------------------------------------------------------------------------- 296 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCCCcCccC
Q 003191 475 QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLM 554 (840)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~~~ 554 (840)
|+ ++.||||||.+.. ++
T Consensus 297 -----------------------------------------------------------G~--k~~vdGPYG~F~~--~~ 313 (438)
T COG4097 297 -----------------------------------------------------------GT--KLEVDGPYGKFDF--ER 313 (438)
T ss_pred -----------------------------------------------------------Cc--eEEEecCcceeec--cc
Confidence 13 6889999999754 34
Q ss_pred C-ceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEE
Q 003191 555 Y-ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFI 629 (840)
Q Consensus 555 y-d~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~i 629 (840)
+ ++.|.||||+||||++|+++.+..+. ..+.|+|++++|+.++.... ++++++. .+..++.+|+
T Consensus 314 g~~~QVWIAGGIGITPFis~l~~l~~~~------s~~~V~L~Y~~~n~e~~~y~-~eLr~~~----qkl~~~~lHi 378 (438)
T COG4097 314 GLNTQVWIAGGIGITPFISMLFTLAERK------SDPPVHLFYCSRNWEEALYA-EELRALA----QKLPNVVLHI 378 (438)
T ss_pred CCcccEEEecCcCcchHHHHHHhhcccc------cCCceEEEEEecCCchhHHH-HHHHHHH----hcCCCeEEEE
Confidence 4 45999999999999999999997643 23579999999999998654 4444442 2345666666
No 7
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.92 E-value=3.2e-23 Score=217.67 Aligned_cols=181 Identities=21% Similarity=0.296 Sum_probs=139.0
Q ss_pred HHHHhhhhcc-----ccceEEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEE
Q 003191 293 LDRFLRFCQS-----RRTVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSS 366 (840)
Q Consensus 293 lDRllR~~r~-----~~~~~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Ls 366 (840)
+||++|.++. ...+++.+++.+.+++.++++..+.. ..|+||||++|.++..+...+|||||+|.++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 5888888664 23567888888999999999997654 47999999999998656667899999998851247899
Q ss_pred EEEEec--CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCC
Q 003191 367 VLIKVL--GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 444 (840)
Q Consensus 367 f~IK~~--Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (840)
|+||.. |.+|+.|++.+.
T Consensus 82 ~~ik~~~~G~~s~~l~~~~~------------------------------------------------------------ 101 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHLA------------------------------------------------------------ 101 (243)
T ss_pred EEEEEcCCCcchhHHHhcCC------------------------------------------------------------
Confidence 999998 888988865321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003191 445 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRP 524 (840)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 524 (840)
T Consensus 102 -------------------------------------------------------------------------------- 101 (243)
T cd06216 102 -------------------------------------------------------------------------------- 101 (243)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchH
Q 003191 525 PPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL 604 (840)
Q Consensus 525 ~~~~~~~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl 604 (840)
||+ ++.|+||||.+..+...+++++|||||+||||++++++++.++. ..+++.++|++|+.+++
T Consensus 102 --------~Gd--~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~------~~~~i~l~~~~r~~~~~ 165 (243)
T cd06216 102 --------PGD--VVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG------PTADVVLLYYARTREDV 165 (243)
T ss_pred --------CCC--EEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEEcCChhhh
Confidence 013 57799999986543334789999999999999999999997653 23579999999999887
Q ss_pred HHHHHHHHHccCCCCCCCCceEEEEEEeCC
Q 003191 605 SLLSNFYKESICPFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 605 ~wl~~~l~el~~~~~~~~~~l~I~iyVTr~ 634 (840)
. +.++++++. .+..++++++++|++
T Consensus 166 ~-~~~el~~l~----~~~~~~~~~~~~s~~ 190 (243)
T cd06216 166 I-FADELRALA----AQHPNLRLHLLYTRE 190 (243)
T ss_pred H-HHHHHHHHH----HhCCCeEEEEEEcCC
Confidence 4 455555553 234567888878764
No 8
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.91 E-value=2.5e-23 Score=215.94 Aligned_cols=164 Identities=23% Similarity=0.343 Sum_probs=129.6
Q ss_pred EEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHh
Q 003191 307 DVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYIL 384 (840)
Q Consensus 307 ~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~ 384 (840)
++.+++.+.+++++++++.+..++|+||||++|+++.. ++|||||+|.+++ ++.++|+||.. |.+|+.|.+.+.
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHE-DGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCC-CCeEEEEEEecCCCccHHHHHHhcc
Confidence 57788889999999999987778899999999999753 4799999999864 47899999997 778998876431
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 464 (840)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (840)
.
T Consensus 78 ~------------------------------------------------------------------------------- 78 (224)
T cd06189 78 E------------------------------------------------------------------------------- 78 (224)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 003191 465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544 (840)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGP 544 (840)
|+ ++.|+||
T Consensus 79 ---------------------------------------------------------------------G~--~v~i~gP 87 (224)
T cd06189 79 ---------------------------------------------------------------------NG--LVRIEGP 87 (224)
T ss_pred ---------------------------------------------------------------------CC--EEEEecC
Confidence 12 5789999
Q ss_pred cCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCc
Q 003191 545 YGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLN 624 (840)
Q Consensus 545 YG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~ 624 (840)
||.+......+++++|||||+||||+++++++++.+. ..++++|+|++|+.+++.+ .++++++. .+..+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~-~~~l~~l~----~~~~~ 156 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------SKRPIHLYWGARTEEDLYL-DELLEAWA----EAHPN 156 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhccC-HHHHHHHH----HhCCC
Confidence 9997654345789999999999999999999998653 1357999999999999854 44455553 23356
Q ss_pred eEEEEEEeCCC
Q 003191 625 LETFIYVTRET 635 (840)
Q Consensus 625 l~I~iyVTr~~ 635 (840)
+++..++++++
T Consensus 157 ~~~~~~~s~~~ 167 (224)
T cd06189 157 FTYVPVLSEPE 167 (224)
T ss_pred eEEEEEeCCCC
Confidence 78877777653
No 9
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.91 E-value=4.1e-23 Score=215.15 Aligned_cols=167 Identities=19% Similarity=0.272 Sum_probs=127.8
Q ss_pred ceEEEEEEEecCceEEEEEeCCC--CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR 380 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~--~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~ 380 (840)
.+++.+++.+.+++.++++..+. .++|+||||+.|++++.. ++|||||+|.+.+ ++.++|+||.. |.+|+.|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~-~~~l~l~vk~~~~G~~s~~l~ 78 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPAD-PGRLEFIIKKYPGGLFSSFLD 78 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCC-CCEEEEEEEECCCCchhhHHh
Confidence 45788899999999998887543 578999999999998543 6799999999864 47899999997 66787775
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 381 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 460 (840)
Q Consensus 381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (840)
+.+..
T Consensus 79 ~~l~~--------------------------------------------------------------------------- 83 (232)
T cd06212 79 DGLAV--------------------------------------------------------------------------- 83 (232)
T ss_pred hcCCC---------------------------------------------------------------------------
Confidence 43210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeee
Q 003191 461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 540 (840)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~ 540 (840)
|+ ++.
T Consensus 84 -------------------------------------------------------------------------G~--~v~ 88 (232)
T cd06212 84 -------------------------------------------------------------------------GD--PVT 88 (232)
T ss_pred -------------------------------------------------------------------------CC--EEE
Confidence 12 578
Q ss_pred eccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCC
Q 003191 541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 620 (840)
Q Consensus 541 VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~ 620 (840)
++||||.+......+++++|||||+||||++++++++.++. ..++|+|+|++|+.+++.+. ++++++. .
T Consensus 89 i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~-~~l~~l~----~ 157 (232)
T cd06212 89 VTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG------SDRPVRFFYGARTARDLFYL-EEIAALG----E 157 (232)
T ss_pred EEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC------CCCcEEEEEeccchHHhccH-HHHHHHH----H
Confidence 99999998654345789999999999999999999998653 13579999999999998654 4455543 1
Q ss_pred CCCceEEEEEEeCCC
Q 003191 621 DKLNLETFIYVTRET 635 (840)
Q Consensus 621 ~~~~l~I~iyVTr~~ 635 (840)
...+++++..++++.
T Consensus 158 ~~~~~~~~~~~s~~~ 172 (232)
T cd06212 158 KIPDFTFIPALSESP 172 (232)
T ss_pred hCCCEEEEEEECCCC
Confidence 234677777777653
No 10
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.91 E-value=5.3e-23 Score=213.54 Aligned_cols=167 Identities=15% Similarity=0.239 Sum_probs=130.3
Q ss_pred EEEEEEEecCceEEEEEeCCCC--cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHH
Q 003191 307 DVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY 382 (840)
Q Consensus 307 ~vasv~~Lp~~vvrLtI~~p~~--~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~ 382 (840)
++.+++.+.+++.+++++.+.. ..++||||++|+++..+...+|||||+|.+++ ++.++|+||.. |.+|+.|.+.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEcCCCcchHHHHhc
Confidence 5678888999999999998765 78999999999998666667899999999864 46799999998 7888877543
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 462 (840)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (840)
+..
T Consensus 81 ~~~----------------------------------------------------------------------------- 83 (231)
T cd06215 81 LKV----------------------------------------------------------------------------- 83 (231)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec
Q 003191 463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 542 (840)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve 542 (840)
|+ ++.|+
T Consensus 84 -----------------------------------------------------------------------G~--~v~i~ 90 (231)
T cd06215 84 -----------------------------------------------------------------------GD--ELWAS 90 (231)
T ss_pred -----------------------------------------------------------------------CC--EEEEE
Confidence 12 57899
Q ss_pred cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191 543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 622 (840)
Q Consensus 543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~ 622 (840)
||||.+.......++++|||||+||||+++++++++++. ..++++|+|++|+.+++.+ .+.++++. .+.
T Consensus 91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~~l~~l~----~~~ 159 (231)
T cd06215 91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR------PDADIVFIHSARSPADIIF-ADELEELA----RRH 159 (231)
T ss_pred cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------CCCcEEEEEecCChhhhhH-HHHHHHHH----HHC
Confidence 999997543234789999999999999999999997643 1357999999999999864 44455553 123
Q ss_pred CceEEEEEEeCCC
Q 003191 623 LNLETFIYVTRET 635 (840)
Q Consensus 623 ~~l~I~iyVTr~~ 635 (840)
.++++++++|+++
T Consensus 160 ~~~~~~~~~~~~~ 172 (231)
T cd06215 160 PNFRLHLILEQPA 172 (231)
T ss_pred CCeEEEEEEccCC
Confidence 4688888888754
No 11
>PRK08051 fre FMN reductase; Validated
Probab=99.91 E-value=3.6e-23 Score=216.48 Aligned_cols=165 Identities=21% Similarity=0.239 Sum_probs=125.6
Q ss_pred ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCc--hhHHHHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGE--WTENLRDY 382 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg--~TkkL~~~ 382 (840)
..++.+++.+++++.++++..+..++|+||||++|+++.. +.|||||+|.|.+ ++.++|+||..++ .+.++.+.
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~-~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPRE-KGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCC-CCcEEEEEEEcCCCcchHHHHHH
Confidence 4578888899999999999877778999999999998743 5699999999853 4789999999753 45555333
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 462 (840)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (840)
++
T Consensus 80 l~------------------------------------------------------------------------------ 81 (232)
T PRK08051 80 IL------------------------------------------------------------------------------ 81 (232)
T ss_pred cC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec
Q 003191 463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 542 (840)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve 542 (840)
||+ +|.|+
T Consensus 82 ----------------------------------------------------------------------~G~--~v~v~ 89 (232)
T PRK08051 82 ----------------------------------------------------------------------KDG--EIEVD 89 (232)
T ss_pred ----------------------------------------------------------------------CCC--EEEEE
Confidence 013 68899
Q ss_pred cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191 543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 622 (840)
Q Consensus 543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~ 622 (840)
||||.+.......++++|||||+||||+++++++++... ..++++|+|++|+.+++ ++.+++.++. .+.
T Consensus 90 gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~------~~~~v~l~~g~r~~~~~-~~~~el~~l~----~~~ 158 (232)
T PRK08051 90 IPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG------PNRPITLYWGGREEDHL-YDLDELEALA----LKH 158 (232)
T ss_pred cCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC------CCCcEEEEEEeccHHHh-hhhHHHHHHH----HHC
Confidence 999997654345689999999999999999999998653 13579999999999998 4555555553 123
Q ss_pred CceEEEEEEeCC
Q 003191 623 LNLETFIYVTRE 634 (840)
Q Consensus 623 ~~l~I~iyVTr~ 634 (840)
.+++++..++++
T Consensus 159 ~~~~~~~~~~~~ 170 (232)
T PRK08051 159 PNLHFVPVVEQP 170 (232)
T ss_pred CCcEEEEEeCCC
Confidence 457776666543
No 12
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.91 E-value=5.6e-23 Score=213.69 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=128.6
Q ss_pred eEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHH
Q 003191 306 VDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYI 383 (840)
Q Consensus 306 ~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l 383 (840)
.++.+++.+.++++++++..+..+.|+||||++|+++... ..|||||+|.+.+ ++.++|+||.. |.+|+.|++.+
T Consensus 3 ~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 3 GTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQG-DGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred EEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCC-CCEEEEEEEECCCCcchHHHHhcC
Confidence 4678888899999999999876778999999999998543 5799999999864 57899999987 88899886543
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 384 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP 463 (840)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (840)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (227)
T cd06213 80 RT------------------------------------------------------------------------------ 81 (227)
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecc
Q 003191 464 PQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG 543 (840)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeG 543 (840)
|+ ++.|+|
T Consensus 82 ----------------------------------------------------------------------G~--~v~i~g 89 (227)
T cd06213 82 ----------------------------------------------------------------------GE--RLTVRG 89 (227)
T ss_pred ----------------------------------------------------------------------CC--EEEEeC
Confidence 12 578999
Q ss_pred CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCC
Q 003191 544 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL 623 (840)
Q Consensus 544 PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~ 623 (840)
|||.+... ...++++|||||+||||++++++++.++. ..++|.++|++|+.+++.+. ++++++.. ....
T Consensus 90 P~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~------~~~~i~l~~~~r~~~~~~~~-~~l~~l~~---~~~~ 158 (227)
T cd06213 90 PFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAG------TKRDVTLLFGARTQRDLYAL-DEIAAIAA---RWRG 158 (227)
T ss_pred CCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcC------CCCcEEEEEeeCCHHHhccH-HHHHHHHH---hccC
Confidence 99997543 34589999999999999999999997653 13579999999999998544 44545431 1234
Q ss_pred ceEEEEEEeCCC
Q 003191 624 NLETFIYVTRET 635 (840)
Q Consensus 624 ~l~I~iyVTr~~ 635 (840)
+++++.+++++.
T Consensus 159 ~~~~~~~~s~~~ 170 (227)
T cd06213 159 RFRFIPVLSEEP 170 (227)
T ss_pred CeEEEEEecCCC
Confidence 677777777653
No 13
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.91 E-value=9.7e-23 Score=214.31 Aligned_cols=172 Identities=18% Similarity=0.219 Sum_probs=133.1
Q ss_pred ccccceEEEEEEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCCC--CCceeceEeeeCCCCCCCeEEEEEEec--C
Q 003191 301 QSRRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--G 373 (840)
Q Consensus 301 r~~~~~~vasv~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~is--~~q~HPFTIaSsp~~~~~~Lsf~IK~~--G 373 (840)
|.++..++.+++.+.+++.++++..+.. +.|+||||+.|+++..+ ...+|||||+|.+.+ +.+.|.||.. |
T Consensus 4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~~~G 81 (247)
T cd06184 4 RGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKREPGG 81 (247)
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEcCCC
Confidence 3445667888999999999999987643 68999999999997433 567899999999864 5899999988 8
Q ss_pred chhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCC
Q 003191 374 EWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453 (840)
Q Consensus 374 g~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (840)
..|+.|.+.+.
T Consensus 82 ~~s~~l~~~~~--------------------------------------------------------------------- 92 (247)
T cd06184 82 LVSNYLHDNVK--------------------------------------------------------------------- 92 (247)
T ss_pred cchHHHHhcCC---------------------------------------------------------------------
Confidence 88888765321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLP 533 (840)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p 533 (840)
|
T Consensus 93 -------------------------------------------------------------------------------~ 93 (247)
T cd06184 93 -------------------------------------------------------------------------------V 93 (247)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHH
Q 003191 534 PTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE 613 (840)
Q Consensus 534 g~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~e 613 (840)
|+ ++.|+||||.+......+++++|||||+||||++++++++.++. ..++++|+|++|+.+++. +.+++++
T Consensus 94 Gd--~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~------~~~~i~l~~~~r~~~~~~-~~~~l~~ 164 (247)
T cd06184 94 GD--VLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG------PGRPVTFIHAARNSAVHA-FRDELEE 164 (247)
T ss_pred CC--EEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC------CCCcEEEEEEcCchhhHH-HHHHHHH
Confidence 13 57899999997554336789999999999999999999998652 135799999999999975 4555555
Q ss_pred ccCCCCCCCCceEEEEEEeCCC
Q 003191 614 SICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 614 l~~~~~~~~~~l~I~iyVTr~~ 635 (840)
+. .+..+++++++++++.
T Consensus 165 l~----~~~~~~~~~~~~s~~~ 182 (247)
T cd06184 165 LA----ARLPNLKLHVFYSEPE 182 (247)
T ss_pred HH----hhCCCeEEEEEECCCC
Confidence 53 1235788888888654
No 14
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.90 E-value=1.1e-22 Score=213.37 Aligned_cols=166 Identities=23% Similarity=0.271 Sum_probs=128.9
Q ss_pred EEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCC-CCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHh
Q 003191 308 VLSASCLPCGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYIL 384 (840)
Q Consensus 308 vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~i-s~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~ 384 (840)
+.+++.+.+++++++++.+....|+||||+.|+++.. +...+|||||+|.+++ +.++|+||.. |..|+.|.+ +.
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~~G~~s~~l~~-l~ 78 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVPDGPLTPRLFK-LK 78 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEecCCCCchHHhc-CC
Confidence 5677888899999999987777899999999999865 6678899999998854 7899999976 788887742 10
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 464 (840)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (840)
T Consensus 79 -------------------------------------------------------------------------------- 78 (241)
T cd06195 79 -------------------------------------------------------------------------------- 78 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec-c
Q 003191 465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE-G 543 (840)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve-G 543 (840)
+|+ ++.++ |
T Consensus 79 --------------------------------------------------------------------~Gd--~v~v~~g 88 (241)
T cd06195 79 --------------------------------------------------------------------PGD--TIYVGKK 88 (241)
T ss_pred --------------------------------------------------------------------CCC--EEEECcC
Confidence 013 57788 9
Q ss_pred CcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191 544 PYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 622 (840)
Q Consensus 544 PYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~ 622 (840)
|||.+..+.. ..++++|||||+||||++++++++.... ..++|+|+|++|+.+|+. +.++++++.. ...
T Consensus 89 P~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~------~~~~v~l~~~~r~~~d~~-~~~el~~l~~---~~~ 158 (241)
T cd06195 89 PTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE------RFDKIVLVHGVRYAEELA-YQDEIEALAK---QYN 158 (241)
T ss_pred CCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC------CCCcEEEEEccCCHHHhh-hHHHHHHHHh---hcC
Confidence 9999754333 4689999999999999999999997542 235799999999999985 5555655531 113
Q ss_pred CceEEEEEEeCCCC
Q 003191 623 LNLETFIYVTRETE 636 (840)
Q Consensus 623 ~~l~I~iyVTr~~~ 636 (840)
.+++++.++|++++
T Consensus 159 ~~~~~~~~~s~~~~ 172 (241)
T cd06195 159 GKFRYVPIVSREKE 172 (241)
T ss_pred CCEEEEEEECcCCc
Confidence 57888888887654
No 15
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.90 E-value=9.8e-23 Score=210.10 Aligned_cols=153 Identities=29% Similarity=0.415 Sum_probs=116.2
Q ss_pred CceEEEEEeCCCC-cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhcCCCCCCCC
Q 003191 316 CGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVG 394 (840)
Q Consensus 316 ~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~~~~~~~~ 394 (840)
.++.++++..+.. ..++||||++|+++..+.+++|||||+|.+.+ ++.++|+||..|++|+.|.+.+..
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~G~~t~~l~~~l~~--------- 76 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKALGDYTRRLAERLKP--------- 76 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeCChHHHHHHHhCCC---------
Confidence 3566777765544 68999999999998656678999999998864 479999999999999999754311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPP 474 (840)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (840)
T Consensus 77 -------------------------------------------------------------------------------- 76 (216)
T cd06198 77 -------------------------------------------------------------------------------- 76 (216)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCCCcCccC
Q 003191 475 QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLM 554 (840)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~~~ 554 (840)
|+ ++.|+||||.+... ..
T Consensus 77 -----------------------------------------------------------G~--~v~i~gP~G~~~~~-~~ 94 (216)
T cd06198 77 -----------------------------------------------------------GT--RVTVEGPYGRFTFD-DR 94 (216)
T ss_pred -----------------------------------------------------------CC--EEEEECCCCCCccc-cc
Confidence 12 57789999997544 33
Q ss_pred CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191 555 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT 632 (840)
Q Consensus 555 yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT 632 (840)
+++++|||||+||||+++++++++++. ..++++++|++|+.+++.+ .+.++++.. +. ++++++..+
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~~l~~l~~----~~-~~~~~~~~~ 160 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARG------DARPVTLFYCVRDPEDAVF-LDELRALAA----AA-GVVLHVIDS 160 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcC------CCceEEEEEEECCHHHhhh-HHHHHHHHH----hc-CeEEEEEeC
Confidence 789999999999999999999998653 1358999999999998854 455555531 12 456655433
No 16
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.90 E-value=1.6e-22 Score=210.51 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=113.6
Q ss_pred EEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCC----------------CCCceeceEeeeCCCCC--CCeEEEEE
Q 003191 311 ASCLPCGTVELVLSKPAN---LRYNALSFFFLQVREL----------------SWLQWHPFSVSSSPLEG--KYHSSVLI 369 (840)
Q Consensus 311 v~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~i----------------s~~q~HPFTIaSsp~~~--~~~Lsf~I 369 (840)
.+.+++++.++++..+.. +.|+||||++|+++.. +.-.++||||+|.|+++ .+.++|+|
T Consensus 3 ~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v 82 (220)
T cd06197 3 SEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV 82 (220)
T ss_pred ceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence 456788999999987766 8999999999999742 11245789999999653 37899999
Q ss_pred EecCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCC
Q 003191 370 KVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 449 (840)
Q Consensus 370 K~~Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (840)
|+.|++|+.|++.+....+
T Consensus 83 k~~G~~T~~L~~~~~~~~~------------------------------------------------------------- 101 (220)
T cd06197 83 RKKGPVTGFLFQVARRLRE------------------------------------------------------------- 101 (220)
T ss_pred EeCCCCCHHHHHhhhcccC-------------------------------------------------------------
Confidence 9999999999987543110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 450 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 529 (840)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 529 (840)
.
T Consensus 102 -----------------------------------------------------------------------------~-- 102 (220)
T cd06197 102 -----------------------------------------------------------------------------Q-- 102 (220)
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred CCCCCCceeeeeccCcCCCCcCc---cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHH
Q 003191 530 PLLPPTKITASVEGPYGHEVPYH---LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSL 606 (840)
Q Consensus 530 ~~~pg~~~~V~VeGPYG~~~~~~---~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~w 606 (840)
|. ++.|+||||.+.... ..+++++|||||+||||+++++++++++.. ..++|+|+|++|+.+++.+
T Consensus 103 ----G~--~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~-----~~~~v~l~~~~r~~~~~~~ 171 (220)
T cd06197 103 ----GL--EVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRN-----TTWDITLLWSLREDDLPLV 171 (220)
T ss_pred ----Cc--eEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhccc-----CCCcEEEEEEecchhhHHH
Confidence 02 588999999875432 357899999999999999999999986431 1357999999999998744
No 17
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.90 E-value=1.5e-22 Score=212.21 Aligned_cols=167 Identities=20% Similarity=0.269 Sum_probs=128.6
Q ss_pred ceEEEEEEEecCceEEEEEeCCCCc--ccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPANL--RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR 380 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~~--~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~ 380 (840)
..++.+++.+.+++.++++..+... .|+||||+.|+++.. .+.|||||+|.+++ ++.++|+||.. |..|+.|+
T Consensus 8 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~~~~-~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 8 EGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGY--EGTRAFSIASSPSD-AGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred eEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCC--CCccccccCCCCCC-CCEEEEEEEECCCCcchhhHh
Confidence 4678888999999999999876554 899999999999854 25799999999864 47899999997 77898885
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 381 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 460 (840)
Q Consensus 381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (840)
+.+.
T Consensus 85 ~~l~---------------------------------------------------------------------------- 88 (238)
T cd06211 85 KQLK---------------------------------------------------------------------------- 88 (238)
T ss_pred hcCC----------------------------------------------------------------------------
Confidence 4221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeee
Q 003191 461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 540 (840)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~ 540 (840)
||+ +|.
T Consensus 89 ------------------------------------------------------------------------~G~--~v~ 94 (238)
T cd06211 89 ------------------------------------------------------------------------EGD--ELE 94 (238)
T ss_pred ------------------------------------------------------------------------CCC--EEE
Confidence 012 578
Q ss_pred eccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCC
Q 003191 541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 620 (840)
Q Consensus 541 VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~ 620 (840)
|+||||.+.......++++|||||+||||+++++++++++.. .++|.|+|++|+.+++ ++.++++++. .
T Consensus 95 i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~-~~~~~l~~l~----~ 163 (238)
T cd06211 95 ISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD------TRKITLFFGARTRAEL-YYLDEFEALE----K 163 (238)
T ss_pred EECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC------CCcEEEEEecCChhhh-ccHHHHHHHH----H
Confidence 999999976433345899999999999999999999986531 2579999999999998 4556666553 1
Q ss_pred CCCceEEEEEEeCCC
Q 003191 621 DKLNLETFIYVTRET 635 (840)
Q Consensus 621 ~~~~l~I~iyVTr~~ 635 (840)
+..+++++..++++.
T Consensus 164 ~~~~~~~~~~~s~~~ 178 (238)
T cd06211 164 DHPNFKYVPALSREP 178 (238)
T ss_pred hCCCeEEEEEECCCC
Confidence 234577777777654
No 18
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.90 E-value=2e-22 Score=210.32 Aligned_cols=166 Identities=19% Similarity=0.251 Sum_probs=127.7
Q ss_pred ceEEEEEEEecCceEEEEEeCCCC------cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--Cchh
Q 003191 305 TVDVLSASCLPCGTVELVLSKPAN------LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWT 376 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~------~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~T 376 (840)
.+++.+++.+.+++++++++.+.. ..|+||||+.|+++.. .++|||||+|.+.+ ++.++|+||.. |.+|
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~-~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNW-DGRLEFLIRLLPGGAFS 79 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCCC-CCEEEEEEEEcCCCccc
Confidence 457888899999999999987653 6899999999999843 36799999999864 47899999986 6678
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 377 ENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPP 456 (840)
Q Consensus 377 kkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (840)
+.|.+.+.
T Consensus 80 ~~l~~~~~------------------------------------------------------------------------ 87 (236)
T cd06210 80 TYLETRAK------------------------------------------------------------------------ 87 (236)
T ss_pred hhhhhCcC------------------------------------------------------------------------
Confidence 77754211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003191 457 LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK 536 (840)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~ 536 (840)
||+
T Consensus 88 ----------------------------------------------------------------------------~Gd- 90 (236)
T cd06210 88 ----------------------------------------------------------------------------VGQ- 90 (236)
T ss_pred ----------------------------------------------------------------------------CCC-
Confidence 113
Q ss_pred eeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191 537 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 616 (840)
Q Consensus 537 ~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~ 616 (840)
++.|+||||.+..+...+++++|||||+||||++++++++.++. ..++++|+|++|+.+++.+ .+.++++.
T Consensus 91 -~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~~l~~l~- 161 (236)
T cd06210 91 -RLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG------EPQEARLFFGVNTEAELFY-LDELKRLA- 161 (236)
T ss_pred -EEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC------CCceEEEEEecCCHHHhhh-HHHHHHHH-
Confidence 57899999997543345689999999999999999999987653 1357999999999999864 44455553
Q ss_pred CCCCCCCceEEEEEEeCC
Q 003191 617 PFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~ 634 (840)
.+..+++++.+++++
T Consensus 162 ---~~~~~~~~~~~~s~~ 176 (236)
T cd06210 162 ---DSLPNLTVRICVWRP 176 (236)
T ss_pred ---HhCCCeEEEEEEcCC
Confidence 133468888888764
No 19
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.90 E-value=1.2e-22 Score=210.22 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=125.4
Q ss_pred EEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHhhc
Q 003191 309 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK 386 (840)
Q Consensus 309 asv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~~~ 386 (840)
.+++.+++++++++++.+..+.|+||||++|+++.. ..|||||+|.+.+ ++.++|+||.. |.+|+.|.+.+..
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~-~~~~~~~i~~~~~G~~s~~l~~~~~~- 76 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDG-DNELEFHIRRKPNGAFSGWLGEEARP- 76 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCC-CCEEEEEEEeccCCccchHHHhccCC-
Confidence 456778999999999988788999999999999753 4599999999864 47899999986 6678877653211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 466 (840)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (840)
T Consensus 77 -------------------------------------------------------------------------------- 76 (222)
T cd06194 77 -------------------------------------------------------------------------------- 76 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcC
Q 003191 467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 546 (840)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG 546 (840)
|+ ++.|+||||
T Consensus 77 -------------------------------------------------------------------G~--~v~i~gP~G 87 (222)
T cd06194 77 -------------------------------------------------------------------GH--ALRLQGPFG 87 (222)
T ss_pred -------------------------------------------------------------------CC--EEEEecCcC
Confidence 12 577999999
Q ss_pred CCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCce
Q 003191 547 HEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNL 625 (840)
Q Consensus 547 ~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l 625 (840)
.+.... ..+++++|||||+||||+++++++++.+. ..++|+|+|++|+.+++. +.++++++. .+..++
T Consensus 88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~-~~~el~~l~----~~~~~~ 156 (222)
T cd06194 88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG------HQGEIRLVHGARDPDDLY-LHPALLWLA----REHPNF 156 (222)
T ss_pred CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC------CCccEEEEEecCChhhcc-CHHHHHHHH----HHCCCe
Confidence 975532 46689999999999999999999998643 135799999999999985 455555553 123467
Q ss_pred EEEEEEeCCC
Q 003191 626 ETFIYVTRET 635 (840)
Q Consensus 626 ~I~iyVTr~~ 635 (840)
+++.+++++.
T Consensus 157 ~~~~~~~~~~ 166 (222)
T cd06194 157 RYIPCVSEGS 166 (222)
T ss_pred EEEEEEccCC
Confidence 7777777643
No 20
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.90 E-value=2.7e-22 Score=208.92 Aligned_cols=167 Identities=23% Similarity=0.288 Sum_probs=129.0
Q ss_pred EEEEEEEecCceEEEEEeCCCC--cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHH
Q 003191 307 DVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY 382 (840)
Q Consensus 307 ~vasv~~Lp~~vvrLtI~~p~~--~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~ 382 (840)
++.+++.+.+++.++++..+.. +.|+||||+.|+++..+...+|||||+|.+. ++.++|.||.. |..|+.|++.
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~~G~~s~~l~~~ 79 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVPGGRVSNYLREH 79 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECCCCccchHHHhc
Confidence 5678888999999999986543 5899999999999754556789999999885 47899999987 7788887643
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 462 (840)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (840)
++
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (231)
T cd06191 80 IQ------------------------------------------------------------------------------ 81 (231)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec
Q 003191 463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 542 (840)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve 542 (840)
||+ ++.|+
T Consensus 82 ----------------------------------------------------------------------~Gd--~v~i~ 89 (231)
T cd06191 82 ----------------------------------------------------------------------PGM--TVEVM 89 (231)
T ss_pred ----------------------------------------------------------------------CCC--EEEEe
Confidence 113 58899
Q ss_pred cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191 543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 622 (840)
Q Consensus 543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~ 622 (840)
||||.+..+....++++|||||+||||++++++++.... ..+++.|+|++|+.+++.+ .++++++. .+.
T Consensus 90 gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~el~~l~----~~~ 158 (231)
T cd06191 90 GPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA------PESDFTLIHSARTPADMIF-AQELRELA----DKP 158 (231)
T ss_pred CCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEecCCHHHHhH-HHHHHHHH----HhC
Confidence 999986543345689999999999999999999987643 1357999999999999864 45555553 234
Q ss_pred CceEEEEEEeCCCC
Q 003191 623 LNLETFIYVTRETE 636 (840)
Q Consensus 623 ~~l~I~iyVTr~~~ 636 (840)
.+++++.++|+++.
T Consensus 159 ~~~~~~~~~s~~~~ 172 (231)
T cd06191 159 QRLRLLCIFTRETL 172 (231)
T ss_pred CCeEEEEEECCCCC
Confidence 57888888887643
No 21
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.90 E-value=4.2e-22 Score=207.34 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=128.5
Q ss_pred ceEEEEEEEecCceEEEEEeCCCC--cccCCCcEEEEEEcC-CCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL 379 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~--~~~~PGQhvfL~vP~-is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL 379 (840)
.+++.+++.+.+++.++++..+.. ..++||||++|+++. -+...+||||++|.+.+ ++.++|+||.. |..|+.|
T Consensus 3 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~~~G~~s~~l 81 (235)
T cd06217 3 VLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred eEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEcCCCcchHHH
Confidence 567888999999999999997765 789999999999983 34456799999999864 46899999987 5577776
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 380 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE 459 (840)
Q Consensus 380 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (840)
.+.++
T Consensus 82 ~~~l~--------------------------------------------------------------------------- 86 (235)
T cd06217 82 HDEVK--------------------------------------------------------------------------- 86 (235)
T ss_pred HhcCC---------------------------------------------------------------------------
Confidence 54221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee
Q 003191 460 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA 539 (840)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V 539 (840)
+|+ ++
T Consensus 87 -------------------------------------------------------------------------~Gd--~v 91 (235)
T cd06217 87 -------------------------------------------------------------------------VGD--LL 91 (235)
T ss_pred -------------------------------------------------------------------------CCC--EE
Confidence 012 57
Q ss_pred eeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCC
Q 003191 540 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF 619 (840)
Q Consensus 540 ~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~ 619 (840)
.|+||||.+.......++++|||||+||||+++++++++++.. .++++++|++|+.+++.+ .++++++.
T Consensus 92 ~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~------~~~i~l~~~~r~~~~~~~-~~el~~~~---- 160 (235)
T cd06217 92 EVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW------PVPFRLLYSARTAEDVIF-RDELEQLA---- 160 (235)
T ss_pred EEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC------CceEEEEEecCCHHHhhH-HHHHHHHH----
Confidence 8999999865432346899999999999999999999986531 357999999999999854 44455543
Q ss_pred CCCCceEEEEEEeCC
Q 003191 620 SDKLNLETFIYVTRE 634 (840)
Q Consensus 620 ~~~~~l~I~iyVTr~ 634 (840)
.+..+++++.++|++
T Consensus 161 ~~~~~~~~~~~~s~~ 175 (235)
T cd06217 161 RRHPNLHVTEALTRA 175 (235)
T ss_pred HHCCCeEEEEEeCCC
Confidence 123457888778765
No 22
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.90 E-value=2.6e-22 Score=208.95 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=126.7
Q ss_pred EEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHhhc
Q 003191 309 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK 386 (840)
Q Consensus 309 asv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~~~ 386 (840)
++++.+.+++.+++++.+..+.|+||||++|+++..+ ..|||||+|.+.+ .+.++|+||.. |.+|+.|++.+..
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~-~~~~~~~vk~~~~G~~s~~l~~~~~~- 77 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANA-SGEWEFIIKRKPGGAASNALFDNLEP- 77 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCC-CCEEEEEEEEcCCCcchHHHhhcCCC-
Confidence 3566788999999998777778999999999998643 5699999998864 57899999987 7789888753210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 466 (840)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (840)
T Consensus 78 -------------------------------------------------------------------------------- 77 (232)
T cd06190 78 -------------------------------------------------------------------------------- 77 (232)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcC
Q 003191 467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 546 (840)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG 546 (840)
|+ ++.|+||||
T Consensus 78 -------------------------------------------------------------------g~--~v~v~gP~G 88 (232)
T cd06190 78 -------------------------------------------------------------------GD--ELELDGPYG 88 (232)
T ss_pred -------------------------------------------------------------------CC--EEEEECCcc
Confidence 12 578999999
Q ss_pred CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceE
Q 003191 547 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLE 626 (840)
Q Consensus 547 ~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~ 626 (840)
.........++++|||||+||||++++++++.++... ..++++|+|++|+.+++.+ .++++++. ....+++
T Consensus 89 ~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~----~~~~v~l~~~~r~~~~~~~-~~el~~l~----~~~~~~~ 159 (232)
T cd06190 89 LAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL----SDRPVDLFYGGRTPSDLCA-LDELSALV----ALGARLR 159 (232)
T ss_pred cceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC----CCCeEEEEEeecCHHHHhh-HHHHHHHH----HhCCCEE
Confidence 9764334568999999999999999999999865211 2458999999999999864 45555553 2345677
Q ss_pred EEEEEeCCC
Q 003191 627 TFIYVTRET 635 (840)
Q Consensus 627 I~iyVTr~~ 635 (840)
+++.+|++.
T Consensus 160 ~~~~~s~~~ 168 (232)
T cd06190 160 VTPAVSDAG 168 (232)
T ss_pred EEEEeCCCC
Confidence 777777654
No 23
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.89 E-value=4.4e-22 Score=206.89 Aligned_cols=166 Identities=23% Similarity=0.293 Sum_probs=128.5
Q ss_pred ceEEEEEEEecCceEEEEEeCCC--CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR 380 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~--~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~ 380 (840)
..++.+++.+++++++++++.+. .+.|+||||+.|+++.. .++|||||+|.+++ +.++|+||.. |..|+.|+
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ysi~s~~~~--~~i~~~i~~~~~G~~s~~l~ 78 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--DETRSYSFSSAPGD--PRLEFLIRLLPGGAMSSYLR 78 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--CcccccccccCCCC--CeEEEEEEEcCCCcchhhHH
Confidence 45788899999999999998766 57899999999999854 35799999998864 7899999986 66788776
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 381 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 460 (840)
Q Consensus 381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (840)
+.+..
T Consensus 79 ~~l~~--------------------------------------------------------------------------- 83 (228)
T cd06209 79 DRAQP--------------------------------------------------------------------------- 83 (228)
T ss_pred hccCC---------------------------------------------------------------------------
Confidence 53210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeee
Q 003191 461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 540 (840)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~ 540 (840)
|+ ++.
T Consensus 84 -------------------------------------------------------------------------G~--~v~ 88 (228)
T cd06209 84 -------------------------------------------------------------------------GD--RLT 88 (228)
T ss_pred -------------------------------------------------------------------------CC--EEE
Confidence 12 477
Q ss_pred eccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCC
Q 003191 541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 620 (840)
Q Consensus 541 VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~ 620 (840)
|+||||..... ...++++|||||+||||++++++++.++. ..++++|+|++|+.+++.+. ++++++. .
T Consensus 89 v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~------~~~~v~l~~~~r~~~~~~~~-~~l~~l~----~ 156 (228)
T cd06209 89 LTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG------SAHPVHLVYGVTRDADLVEL-DRLEALA----E 156 (228)
T ss_pred EECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC------CCCcEEEEEecCCHHHhccH-HHHHHHH----H
Confidence 89999997543 34488999999999999999999998653 13579999999999998654 4444543 2
Q ss_pred CCCceEEEEEEeCCCC
Q 003191 621 DKLNLETFIYVTRETE 636 (840)
Q Consensus 621 ~~~~l~I~iyVTr~~~ 636 (840)
+..++++++++|++++
T Consensus 157 ~~~~~~~~~~~s~~~~ 172 (228)
T cd06209 157 RLPGFSFRTVVADPDS 172 (228)
T ss_pred hCCCeEEEEEEcCCCc
Confidence 3346888888887543
No 24
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.89 E-value=4.4e-22 Score=205.70 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=125.7
Q ss_pred EEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHhhc
Q 003191 309 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK 386 (840)
Q Consensus 309 asv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~~~ 386 (840)
.+++.+.++++++++..+..+.++||||+.|+++..+. ++|||||+|.+.+ .+.++|+||.. |.+|+.|.+.++.
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~-~~~~~~~i~~~~~G~~s~~l~~~l~~- 78 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNE-DGEIEFHVRAVPGGRVSNALHDELKV- 78 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCC-CCEEEEEEEeCCCCcchHHHhhcCcc-
Confidence 45677889999999987777889999999999985432 6799999998864 47899999997 8888888663211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 466 (840)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (840)
T Consensus 79 -------------------------------------------------------------------------------- 78 (224)
T cd06187 79 -------------------------------------------------------------------------------- 78 (224)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcC
Q 003191 467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 546 (840)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG 546 (840)
|+ ++.|+||||
T Consensus 79 -------------------------------------------------------------------G~--~v~i~gP~G 89 (224)
T cd06187 79 -------------------------------------------------------------------GD--RVRLSGPYG 89 (224)
T ss_pred -------------------------------------------------------------------CC--EEEEeCCcc
Confidence 12 577999999
Q ss_pred CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceE
Q 003191 547 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLE 626 (840)
Q Consensus 547 ~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~ 626 (840)
........+++++|||||+||||++++++++..+. ..++|.|+|++|+.+++.+.+++ +++. .+..+++
T Consensus 90 ~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~------~~~~v~l~~~~~~~~~~~~~~~l-~~~~----~~~~~~~ 158 (224)
T cd06187 90 TFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG------EPRPVHLFFGARTERDLYDLEGL-LALA----ARHPWLR 158 (224)
T ss_pred ceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhhcChHHH-HHHH----HhCCCeE
Confidence 87654344789999999999999999999998653 13579999999999998655444 3442 1334577
Q ss_pred EEEEEeCC
Q 003191 627 TFIYVTRE 634 (840)
Q Consensus 627 I~iyVTr~ 634 (840)
+++++|++
T Consensus 159 ~~~~~~~~ 166 (224)
T cd06187 159 VVPVVSHE 166 (224)
T ss_pred EEEEeCCC
Confidence 77777764
No 25
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.89 E-value=8.7e-22 Score=217.10 Aligned_cols=167 Identities=19% Similarity=0.304 Sum_probs=129.3
Q ss_pred cceEEEEEEEecCceEEEEEeCC--CCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKP--ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL 379 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p--~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL 379 (840)
...++.+++.+.+++.++++..+ ..+.|+||||+.|.++.. ++|||||+|.+++ ++.++|+||.. |.+|+.|
T Consensus 103 ~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~-~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 103 LPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHS-GGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCC-CCEEEEEEEecCCCccHHHH
Confidence 45678888889999999999865 357899999999999752 5799999999864 47899999976 7778888
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 380 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE 459 (840)
Q Consensus 380 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (840)
++.++.
T Consensus 179 ~~~l~~-------------------------------------------------------------------------- 184 (339)
T PRK07609 179 FGALKE-------------------------------------------------------------------------- 184 (339)
T ss_pred HHhccC--------------------------------------------------------------------------
Confidence 764311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee
Q 003191 460 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA 539 (840)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V 539 (840)
|+ ++
T Consensus 185 --------------------------------------------------------------------------G~--~v 188 (339)
T PRK07609 185 --------------------------------------------------------------------------RD--IL 188 (339)
T ss_pred --------------------------------------------------------------------------CC--EE
Confidence 12 57
Q ss_pred eeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCC
Q 003191 540 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF 619 (840)
Q Consensus 540 ~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~ 619 (840)
.|+||||.+.......++++|||||+||||++++++++++.. ..++|+|+|++|+.+++. ++++++++.
T Consensus 189 ~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~------~~~~i~l~~g~r~~~dl~-~~e~l~~~~---- 257 (339)
T PRK07609 189 RIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG------IQRPVTLYWGARRPEDLY-LSALAEQWA---- 257 (339)
T ss_pred EEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC------CCCcEEEEEecCChHHhc-cHHHHHHHH----
Confidence 799999998654346689999999999999999999998643 135799999999999984 455544443
Q ss_pred CCCCceEEEEEEeCCC
Q 003191 620 SDKLNLETFIYVTRET 635 (840)
Q Consensus 620 ~~~~~l~I~iyVTr~~ 635 (840)
.+..+++++..++++.
T Consensus 258 ~~~~~~~~~~~~s~~~ 273 (339)
T PRK07609 258 EELPNFRYVPVVSDAL 273 (339)
T ss_pred HhCCCeEEEEEecCCC
Confidence 1234678888888753
No 26
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.88 E-value=2.8e-21 Score=202.13 Aligned_cols=168 Identities=21% Similarity=0.257 Sum_probs=127.9
Q ss_pred ceEEEEEEEecCceEEEEEeCCCC----cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPAN----LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 378 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~----~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk 378 (840)
.+++.+++.+.+++.+++++.+.. +.|+||||+.|+++..+..++||||++|.+++ +.++|+||.. |..|..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~~G~~s~~ 80 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVPGGRFSNW 80 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcCCCccchh
Confidence 467888999999999999987654 57999999999998555667899999998764 4899999987 667777
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 458 (840)
Q Consensus 379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (840)
|.+.+.
T Consensus 81 l~~~~~-------------------------------------------------------------------------- 86 (241)
T cd06214 81 ANDELK-------------------------------------------------------------------------- 86 (241)
T ss_pred HHhccC--------------------------------------------------------------------------
Confidence 753221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191 459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 538 (840)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~ 538 (840)
||. +
T Consensus 87 --------------------------------------------------------------------------~G~--~ 90 (241)
T cd06214 87 --------------------------------------------------------------------------AGD--T 90 (241)
T ss_pred --------------------------------------------------------------------------CCC--E
Confidence 012 4
Q ss_pred eeeccCcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191 539 ASVEGPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617 (840)
Q Consensus 539 V~VeGPYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~ 617 (840)
+.|.||+|.+..... .+++++|||||+||||++++++++++... .++++|+|++|+.+++.+ .+.++++.
T Consensus 91 v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~------~~~v~l~~~~r~~~~~~~-~~~l~~l~-- 161 (241)
T cd06214 91 LEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP------ASRVTLVYGNRTEASVIF-REELADLK-- 161 (241)
T ss_pred EEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC------CCcEEEEEEeCCHHHhhH-HHHHHHHH--
Confidence 778999998765433 58899999999999999999999886531 357999999999999854 45555553
Q ss_pred CCCCCCceEEEEEEeCC
Q 003191 618 FFSDKLNLETFIYVTRE 634 (840)
Q Consensus 618 ~~~~~~~l~I~iyVTr~ 634 (840)
.....+++++.++|++
T Consensus 162 -~~~~~~~~~~~~~~~~ 177 (241)
T cd06214 162 -ARYPDRLTVIHVLSRE 177 (241)
T ss_pred -HhCcCceEEEEEecCC
Confidence 1123467777777753
No 27
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.88 E-value=2e-21 Score=199.45 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=127.4
Q ss_pred EEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHhhcCC
Q 003191 311 ASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSKSE 388 (840)
Q Consensus 311 v~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~~~~~ 388 (840)
++.+.+++.++++..+....|+||||+.|+++..+...+|||||+|.+.+ .+.++|+||.. |.+|+.|.+. +.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~~G~~s~~l~~~---~~- 77 (223)
T cd00322 3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVPGGPFSAWLHDL---KP- 77 (223)
T ss_pred eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeCCCchhhHHhcC---CC-
Confidence 45667899999998877778999999999998655678999999999864 47899999999 9999988643 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 389 SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPH 468 (840)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (840)
T Consensus 78 -------------------------------------------------------------------------------- 77 (223)
T cd00322 78 -------------------------------------------------------------------------------- 77 (223)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCC
Q 003191 469 PPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHE 548 (840)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~ 548 (840)
|+ ++.|+||||.+
T Consensus 78 -----------------------------------------------------------------G~--~v~i~gP~G~~ 90 (223)
T cd00322 78 -----------------------------------------------------------------GD--EVEVSGPGGDF 90 (223)
T ss_pred -----------------------------------------------------------------CC--EEEEECCCccc
Confidence 12 57899999998
Q ss_pred CcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEE
Q 003191 549 VPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETF 628 (840)
Q Consensus 549 ~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~ 628 (840)
......+++++|||||+||||++++++++.++. ..++++|+|++|+.+++.+. ++++++. ....+++++
T Consensus 91 ~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~-~el~~l~----~~~~~~~~~ 159 (223)
T cd00322 91 FLPLEESGPVVLIAGGIGITPFRSMLRHLAADK------PGGEITLLYGARTPADLLFL-DELEELA----KEGPNFRLV 159 (223)
T ss_pred ccCcccCCcEEEEecCCchhHHHHHHHHHHhhC------CCCcEEEEEecCCHHHhhHH-HHHHHHH----HhCCCeEEE
Confidence 544467889999999999999999999998653 13579999999999988544 4445543 134567887
Q ss_pred EEEeCCC
Q 003191 629 IYVTRET 635 (840)
Q Consensus 629 iyVTr~~ 635 (840)
++++++.
T Consensus 160 ~~~~~~~ 166 (223)
T cd00322 160 LALSRES 166 (223)
T ss_pred EEecCCC
Confidence 7777654
No 28
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.88 E-value=1.1e-21 Score=211.36 Aligned_cols=87 Identities=14% Similarity=0.313 Sum_probs=65.4
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~ 617 (840)
++.|.||||.+... ...++++|||||+||||+++++++++.+... .++|+|+|++|+.+++.+ .++++++.
T Consensus 134 ~v~i~gP~G~f~l~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~~-----~~~v~l~~g~r~~~d~~~-~~el~~l~-- 204 (283)
T cd06188 134 KVTASGPFGEFFIK-DTDREMVFIGGGAGMAPLRSHIFHLLKTLKS-----KRKISFWYGARSLKELFY-QEEFEALE-- 204 (283)
T ss_pred EEEEECcccccccc-CCCCcEEEEEecccHhHHHHHHHHHHhcCCC-----CceEEEEEecCCHHHhhH-HHHHHHHH--
Confidence 57899999998654 4567999999999999999999998765311 358999999999999854 44445543
Q ss_pred CCCCCCceEEEEEEeCCC
Q 003191 618 FFSDKLNLETFIYVTRET 635 (840)
Q Consensus 618 ~~~~~~~l~I~iyVTr~~ 635 (840)
.+..++++++.+|++.
T Consensus 205 --~~~~~~~~~~~~s~~~ 220 (283)
T cd06188 205 --KEFPNFKYHPVLSEPQ 220 (283)
T ss_pred --HHCCCeEEEEEECCCC
Confidence 1234577777777643
No 29
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.88 E-value=1.8e-21 Score=214.27 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=125.1
Q ss_pred cceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 381 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~ 381 (840)
...++.+++.+.+++.++++..+..+.|+||||+.|.++.. ...+|||||+|.|.+ ++.++|+||.. |..|+.|++
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~-~~~l~i~Vk~~~~G~~S~~L~~ 87 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGV-SEFITLTVRRIDDGVGSQWLTR 87 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCC-CCcEEEEEEEcCCCcchhHHHh
Confidence 35678888889999999999877777899999999999742 235699999999864 46899999987 667887765
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 461 (840)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (840)
.+..
T Consensus 88 ~l~~---------------------------------------------------------------------------- 91 (332)
T PRK10684 88 DVKR---------------------------------------------------------------------------- 91 (332)
T ss_pred cCCC----------------------------------------------------------------------------
Confidence 3211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191 462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 541 (840)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V 541 (840)
|+ ++.|
T Consensus 92 ------------------------------------------------------------------------Gd--~v~v 97 (332)
T PRK10684 92 ------------------------------------------------------------------------GD--YLWL 97 (332)
T ss_pred ------------------------------------------------------------------------CC--EEEE
Confidence 13 5778
Q ss_pred ccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCC
Q 003191 542 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSD 621 (840)
Q Consensus 542 eGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~ 621 (840)
.||+|.+.......++++|||||+||||+++++++++.+. ..++|+|+|++|+.+++.+ .++++++. .+
T Consensus 98 ~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~------~~~~v~l~y~~r~~~~~~~-~~el~~l~----~~ 166 (332)
T PRK10684 98 SDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR------PQADVQVIFNVRTPQDVIF-ADEWRQLK----QR 166 (332)
T ss_pred eCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------CCCCEEEEEeCCChHHhhh-HHHHHHHH----HH
Confidence 9999997643345678999999999999999999987643 1357999999999999864 44455543 12
Q ss_pred CCceEEEEEEe
Q 003191 622 KLNLETFIYVT 632 (840)
Q Consensus 622 ~~~l~I~iyVT 632 (840)
..+++++++.+
T Consensus 167 ~~~~~~~~~~~ 177 (332)
T PRK10684 167 YPQLNLTLVAE 177 (332)
T ss_pred CCCeEEEEEec
Confidence 23455554443
No 30
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.88 E-value=5.9e-23 Score=200.92 Aligned_cols=80 Identities=43% Similarity=0.657 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCC
Q 003191 555 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 555 yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~ 634 (840)
||+++|||||+||||++|++++++++.++ +....++|+|+|++|+.+++.|+.++++++.+.... .++++++|+|++
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~-~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~--~~~~~~iyvT~~ 77 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNR-GSSRTRRIKLVWVVRDADELEWFSPELNELLELDRL--GNVEVHIYVTRE 77 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHT-T-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHH--TSEEEEEEETT-
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhcc-ccccccceEEEEeeCchhhhhhhhHHHHHHHHHhcc--ccceEEEEEcCC
Confidence 79999999999999999999999988752 234578999999999999999999888776522211 579999999998
Q ss_pred CCC
Q 003191 635 TEP 637 (840)
Q Consensus 635 ~~~ 637 (840)
...
T Consensus 78 ~~~ 80 (156)
T PF08030_consen 78 SSA 80 (156)
T ss_dssp ---
T ss_pred ccc
Confidence 754
No 31
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.88 E-value=4.2e-21 Score=215.90 Aligned_cols=168 Identities=15% Similarity=0.208 Sum_probs=129.1
Q ss_pred cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCC--CCCceeceEeeeCCCCCCCeEEEEEEec--Cchh
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVREL--SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWT 376 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~i--s~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~T 376 (840)
+..++.+++.+.+++.++++..+. ...|+||||+.|+++.- ...++|||||+|.|+ ++.++|+||.. |..|
T Consensus 155 ~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~~~G~~S 232 (399)
T PRK13289 155 RDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKREAGGKVS 232 (399)
T ss_pred EEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEECCCCeeh
Confidence 456788889999999999998643 35899999999999632 234579999999985 36899999998 8889
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 377 ENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPP 456 (840)
Q Consensus 377 kkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (840)
+.|++.++.
T Consensus 233 ~~L~~~l~~----------------------------------------------------------------------- 241 (399)
T PRK13289 233 NYLHDHVNV----------------------------------------------------------------------- 241 (399)
T ss_pred HHHhhcCCC-----------------------------------------------------------------------
Confidence 988653211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003191 457 LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK 536 (840)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~ 536 (840)
|+
T Consensus 242 -----------------------------------------------------------------------------Gd- 243 (399)
T PRK13289 242 -----------------------------------------------------------------------------GD- 243 (399)
T ss_pred -----------------------------------------------------------------------------CC-
Confidence 13
Q ss_pred eeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191 537 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 616 (840)
Q Consensus 537 ~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~ 616 (840)
+|.|.||||.+..+....++++|||||+||||++|++++++.+. ..++|+|+|++|+.+++. +.++++++.
T Consensus 244 -~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~-~~~eL~~l~- 314 (399)
T PRK13289 244 -VLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ------PKRPVHFIHAARNGGVHA-FRDEVEALA- 314 (399)
T ss_pred -EEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC------CCCCEEEEEEeCChhhch-HHHHHHHHH-
Confidence 57899999997544335679999999999999999999997653 135899999999999985 455566653
Q ss_pred CCCCCCCceEEEEEEeCC
Q 003191 617 PFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~ 634 (840)
.+..+++++.+++++
T Consensus 315 ---~~~~~~~~~~~~s~~ 329 (399)
T PRK13289 315 ---ARHPNLKAHTWYREP 329 (399)
T ss_pred ---HhCCCcEEEEEECCC
Confidence 123367888777764
No 32
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.87 E-value=3.7e-21 Score=212.76 Aligned_cols=167 Identities=21% Similarity=0.275 Sum_probs=127.8
Q ss_pred cceEEEEEEEecCceEEEEEeCC---CCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKP---ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 378 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p---~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk 378 (840)
...++.+++.+.+++.++++..+ +.+.|+||||+.|++++. -.+|||||+|.|.+ ++.++|+||.. |.+|+.
T Consensus 107 ~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySias~p~~-~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 107 ISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--DDWRSYSFANRPNA-TNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--CceeecccCCCCCC-CCeEEEEEEECCCCcchhh
Confidence 35678889999999999999865 467899999999999853 24799999999864 57899999985 556777
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 458 (840)
Q Consensus 379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (840)
|++.+.
T Consensus 184 L~~~l~-------------------------------------------------------------------------- 189 (340)
T PRK11872 184 LRERCQ-------------------------------------------------------------------------- 189 (340)
T ss_pred HhhCCC--------------------------------------------------------------------------
Confidence 764321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191 459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 538 (840)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~ 538 (840)
||+ +
T Consensus 190 --------------------------------------------------------------------------~G~--~ 193 (340)
T PRK11872 190 --------------------------------------------------------------------------VGD--E 193 (340)
T ss_pred --------------------------------------------------------------------------CCC--E
Confidence 113 5
Q ss_pred eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCC
Q 003191 539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF 618 (840)
Q Consensus 539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~ 618 (840)
|.|+||||.+..+ ...++++|||||+||||+++++++++++. ..++|+|+|++|+.+|+.+. ++++++.
T Consensus 194 v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~------~~~~v~l~~g~r~~~dl~~~-~el~~~~--- 262 (340)
T PRK11872 194 ILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQG------CSPPVHLYYGVRHAADLCEL-QRLAAYA--- 262 (340)
T ss_pred EEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcC------CCCcEEEEEecCChHHhccH-HHHHHHH---
Confidence 8899999997643 34579999999999999999999998643 13579999999999998654 4444443
Q ss_pred CCCCCceEEEEEEeCCC
Q 003191 619 FSDKLNLETFIYVTRET 635 (840)
Q Consensus 619 ~~~~~~l~I~iyVTr~~ 635 (840)
.+..+++++..+++++
T Consensus 263 -~~~~~~~~~~~~s~~~ 278 (340)
T PRK11872 263 -ERLPNFRYHPVVSKAS 278 (340)
T ss_pred -HHCCCcEEEEEEeCCC
Confidence 2334688888887543
No 33
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.87 E-value=5.7e-21 Score=211.65 Aligned_cols=169 Identities=19% Similarity=0.234 Sum_probs=125.7
Q ss_pred ceEEEEEEEecCceEEEEEeCCC----CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPA----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 378 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~----~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk 378 (840)
.+++.+++.+.+++.++++..+. .+.|+||||+.|+++.-+....|||||+|.++ ++.++|.||.. |..|+.
T Consensus 3 ~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~~~G~~S~~ 80 (352)
T TIGR02160 3 RLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKIPGGLFSTW 80 (352)
T ss_pred EeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEeCCCcchHH
Confidence 46788889999999999998653 35899999999999744445679999999884 37899999987 456777
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 458 (840)
Q Consensus 379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (840)
|.+.+.
T Consensus 81 l~~~l~-------------------------------------------------------------------------- 86 (352)
T TIGR02160 81 ANDEIR-------------------------------------------------------------------------- 86 (352)
T ss_pred HHhcCC--------------------------------------------------------------------------
Confidence 654321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191 459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 538 (840)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~ 538 (840)
+|+ +
T Consensus 87 --------------------------------------------------------------------------~Gd--~ 90 (352)
T TIGR02160 87 --------------------------------------------------------------------------PGD--T 90 (352)
T ss_pred --------------------------------------------------------------------------CCC--E
Confidence 113 5
Q ss_pred eeeccCcCCCCcCcc--CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191 539 ASVEGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 616 (840)
Q Consensus 539 V~VeGPYG~~~~~~~--~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~ 616 (840)
+.|.||+|.+..+.. ..++++|||||+||||+++++++++.+. ..++|+|+|++|+.+++.+. ++++++..
T Consensus 91 v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~------~~~~v~l~~~~r~~~d~~~~-~el~~l~~ 163 (352)
T TIGR02160 91 LEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE------PRSTFTLVYGNRRTASVMFA-EELADLKD 163 (352)
T ss_pred EEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC------CCceEEEEEEeCCHHHHHHH-HHHHHHHH
Confidence 778999999754322 3479999999999999999999998653 13579999999999998554 44455431
Q ss_pred CCCCCCCceEEEEEEeCCC
Q 003191 617 PFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~~ 635 (840)
....+++++.++++++
T Consensus 164 ---~~~~~~~~~~~~s~~~ 179 (352)
T TIGR02160 164 ---KHPQRFHLAHVLSREP 179 (352)
T ss_pred ---hCcCcEEEEEEecCCC
Confidence 1223577777777653
No 34
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.87 E-value=1e-20 Score=195.13 Aligned_cols=158 Identities=25% Similarity=0.331 Sum_probs=121.7
Q ss_pred ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCC-CCceeceEeeeCCCCCCCeEEEEEEec---CchhHHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELS-WLQWHPFSVSSSPLEGKYHSSVLIKVL---GEWTENLR 380 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is-~~q~HPFTIaSsp~~~~~~Lsf~IK~~---Gg~TkkL~ 380 (840)
..++.+++.+.+++.++++..+..+.|+||||+.|.++..+ ..++||||++|.+.+ +.++|+||.. |++|+.|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~~~~g~~s~~l~ 79 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSYPDHDGVTEQLG 79 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEcCCCCcHhHHHH
Confidence 45788899999999999999888889999999999997443 347899999999863 7899999985 67887773
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 381 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 460 (840)
Q Consensus 381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (840)
+. +
T Consensus 80 ~l---~-------------------------------------------------------------------------- 82 (218)
T cd06196 80 RL---Q-------------------------------------------------------------------------- 82 (218)
T ss_pred hC---C--------------------------------------------------------------------------
Confidence 21 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeee
Q 003191 461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 540 (840)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~ 540 (840)
||+ ++.
T Consensus 83 ------------------------------------------------------------------------~G~--~v~ 88 (218)
T cd06196 83 ------------------------------------------------------------------------PGD--TLL 88 (218)
T ss_pred ------------------------------------------------------------------------CCC--EEE
Confidence 113 577
Q ss_pred eccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCC
Q 003191 541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 620 (840)
Q Consensus 541 VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~ 620 (840)
++||||.+.. .++++|||||+||||+++++++++.+. ..++++|+|++|+.+++. +.++++++.
T Consensus 89 i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~-~~~el~~l~----- 152 (218)
T cd06196 89 IEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG------KLEGNTLIFANKTEKDII-LKDELEKML----- 152 (218)
T ss_pred EECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC------CCceEEEEEecCCHHHHh-hHHHHHHhh-----
Confidence 9999998632 268999999999999999999998643 135799999999999874 445555431
Q ss_pred CCCceEEEEEEeCC
Q 003191 621 DKLNLETFIYVTRE 634 (840)
Q Consensus 621 ~~~~l~I~iyVTr~ 634 (840)
++++..++|++
T Consensus 153 ---~~~~~~~~s~~ 163 (218)
T cd06196 153 ---GLKFINVVTDE 163 (218)
T ss_pred ---cceEEEEEcCC
Confidence 24555566653
No 35
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.87 E-value=1.1e-20 Score=200.74 Aligned_cols=160 Identities=22% Similarity=0.366 Sum_probs=119.8
Q ss_pred EEEEEecCceEEEEEeCCC----CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191 309 LSASCLPCGTVELVLSKPA----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 384 (840)
Q Consensus 309 asv~~Lp~~vvrLtI~~p~----~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~ 384 (840)
.+++.+.+++.+++++.+. .++|+||||++|+++..+ .|||||+|.+++ ++.++|+||..|.+|+.|.+ ++
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~-~~~l~~~Ik~~G~~S~~L~~-l~ 76 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTR-RGPLELTIRRVGRVTEALHE-LK 76 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCC-CCeEEEEEEeCChhhHHHHc-CC
Confidence 4567778876666555432 378999999999998543 299999999864 57899999999999988753 10
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 464 (840)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (840)
.
T Consensus 77 ~------------------------------------------------------------------------------- 77 (253)
T cd06221 77 P------------------------------------------------------------------------------- 77 (253)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 003191 465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544 (840)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGP 544 (840)
|. ++.|+||
T Consensus 78 ---------------------------------------------------------------------G~--~v~i~gP 86 (253)
T cd06221 78 ---------------------------------------------------------------------GD--TVGLRGP 86 (253)
T ss_pred ---------------------------------------------------------------------CC--EEEEECC
Confidence 12 5789999
Q ss_pred cCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCC
Q 003191 545 YGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL 623 (840)
Q Consensus 545 YG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~ 623 (840)
||....... .++++||||||+||||+++++++++++.+ ..++++|+|++|+.+++.+ .+.++++. .+ .
T Consensus 87 ~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~-----~~~~i~Li~~~r~~~~~~~-~~~L~~l~----~~-~ 155 (253)
T cd06221 87 FGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE-----DYGKVTLLYGARTPEDLLF-KEELKEWA----KR-S 155 (253)
T ss_pred cCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc-----cCCcEEEEEecCChHHcch-HHHHHHHH----hc-C
Confidence 999543222 57899999999999999999999987531 1358999999999999854 55565654 12 5
Q ss_pred ceEEEEEEeCC
Q 003191 624 NLETFIYVTRE 634 (840)
Q Consensus 624 ~l~I~iyVTr~ 634 (840)
+++++++++++
T Consensus 156 ~~~~~~~~s~~ 166 (253)
T cd06221 156 DVEVILTVDRA 166 (253)
T ss_pred CeEEEEEeCCC
Confidence 67787777654
No 36
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.87 E-value=1.4e-20 Score=195.42 Aligned_cols=167 Identities=19% Similarity=0.271 Sum_probs=126.4
Q ss_pred EEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191 307 DVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 381 (840)
Q Consensus 307 ~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~ 381 (840)
++.+++.+.+++.++++..+. ...++||||+.|+++..+....||||++|.+.+ ++.++|+||.. |..|+.|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~~G~~s~~l~~ 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYPGGKMSQYLHS 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECCCCcchhHHhc
Confidence 567778888999999998765 368999999999998766678899999998854 46899999996 777877642
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 461 (840)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (840)
+.
T Consensus 81 -~~----------------------------------------------------------------------------- 82 (234)
T cd06183 81 -LK----------------------------------------------------------------------------- 82 (234)
T ss_pred -CC-----------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191 462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 541 (840)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V 541 (840)
+|+ ++.|
T Consensus 83 -----------------------------------------------------------------------~G~--~v~i 89 (234)
T cd06183 83 -----------------------------------------------------------------------PGD--TVEI 89 (234)
T ss_pred -----------------------------------------------------------------------CCC--EEEE
Confidence 012 5789
Q ss_pred ccCcCCCCcCccC-CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCC
Q 003191 542 EGPYGHEVPYHLM-YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 620 (840)
Q Consensus 542 eGPYG~~~~~~~~-yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~ 620 (840)
+||||.+...... +++++|||||+||||+++++++++.+.. ..++|+|+|++|+.+++ ++.++++++.. .
T Consensus 90 ~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~-----~~~~i~l~~~~r~~~~~-~~~~~l~~~~~---~ 160 (234)
T cd06183 90 RGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE-----DKTKISLLYANRTEEDI-LLREELDELAK---K 160 (234)
T ss_pred ECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC-----cCcEEEEEEecCCHHHh-hhHHHHHHHHH---h
Confidence 9999986543233 3899999999999999999999986531 13589999999999987 45555555531 1
Q ss_pred CCCceEEEEEEeCC
Q 003191 621 DKLNLETFIYVTRE 634 (840)
Q Consensus 621 ~~~~l~I~iyVTr~ 634 (840)
...++++++++|++
T Consensus 161 ~~~~~~~~~~~~~~ 174 (234)
T cd06183 161 HPDRFKVHYVLSRP 174 (234)
T ss_pred CcccEEEEEEEcCC
Confidence 13567888777754
No 37
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.87 E-value=2.3e-20 Score=202.15 Aligned_cols=167 Identities=21% Similarity=0.342 Sum_probs=124.0
Q ss_pred cceEEEEEEEecCce--EEEEEeCC---CCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHH
Q 003191 304 RTVDVLSASCLPCGT--VELVLSKP---ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTEN 378 (840)
Q Consensus 304 ~~~~vasv~~Lp~~v--vrLtI~~p---~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~Tkk 378 (840)
+..++.+++.+.+++ +++++..+ ..+.|+||||++|+++... .|||||+|.+.+ ++.++|+||..|.+|+.
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~-~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTR-KGFFELCIRRAGRVTTV 81 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCC-CCEEEEEEEeCChHHHH
Confidence 356788888888874 55555444 2467999999999998543 389999998854 57899999999999997
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 458 (840)
Q Consensus 379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (840)
|.+ +.
T Consensus 82 L~~-l~-------------------------------------------------------------------------- 86 (289)
T PRK08345 82 IHR-LK-------------------------------------------------------------------------- 86 (289)
T ss_pred HHh-CC--------------------------------------------------------------------------
Confidence 742 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191 459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 538 (840)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~ 538 (840)
||+ +
T Consensus 87 --------------------------------------------------------------------------~Gd--~ 90 (289)
T PRK08345 87 --------------------------------------------------------------------------EGD--I 90 (289)
T ss_pred --------------------------------------------------------------------------CCC--E
Confidence 012 5
Q ss_pred eeeccCcCCCCc-CccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191 539 ASVEGPYGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617 (840)
Q Consensus 539 V~VeGPYG~~~~-~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~ 617 (840)
+.|+||||.... +....++++|||||+||||+++++++++.+.. ..++|+|+|++|+.+|+.+ .++++++.
T Consensus 91 v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~-----~~~~v~l~~~~r~~~d~~~-~deL~~l~-- 162 (289)
T PRK08345 91 VGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW-----KYGNITLIYGAKYYEDLLF-YDELIKDL-- 162 (289)
T ss_pred EEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC-----CCCcEEEEEecCCHHHhhH-HHHHHHHH--
Confidence 789999998433 21234689999999999999999999886431 1358999999999999864 45555553
Q ss_pred CCCCCCceEEEEEEeCCC
Q 003191 618 FFSDKLNLETFIYVTRET 635 (840)
Q Consensus 618 ~~~~~~~l~I~iyVTr~~ 635 (840)
.+..+++++.++++++
T Consensus 163 --~~~~~~~~~~~~s~~~ 178 (289)
T PRK08345 163 --AEAENVKIIQSVTRDP 178 (289)
T ss_pred --hcCCCEEEEEEecCCC
Confidence 2345788888888754
No 38
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.85 E-value=7.4e-20 Score=193.54 Aligned_cols=145 Identities=26% Similarity=0.352 Sum_probs=114.1
Q ss_pred EEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcC-CCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhc
Q 003191 309 LSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK 386 (840)
Q Consensus 309 asv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~-is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~ 386 (840)
.+++.+.+++.+++++.+. ...|+||||+.|+++. ...+.+||||++|.+.+ ++.++|+||..|.+|+.|.+. +
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~G~~s~~l~~l---~ 77 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVVGKGTRLLSEL---K 77 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEECcchHHHhcC---C
Confidence 4567788999999999876 5789999999999985 45678899999998753 478999999999998766321 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 466 (840)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (840)
T Consensus 78 -------------------------------------------------------------------------------- 77 (246)
T cd06218 78 -------------------------------------------------------------------------------- 77 (246)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcC
Q 003191 467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 546 (840)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG 546 (840)
+|+ ++.|+||||
T Consensus 78 ------------------------------------------------------------------~Gd--~v~i~gP~G 89 (246)
T cd06218 78 ------------------------------------------------------------------AGD--ELDVLGPLG 89 (246)
T ss_pred ------------------------------------------------------------------CCC--EEEEEecCC
Confidence 012 588999999
Q ss_pred CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191 547 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614 (840)
Q Consensus 547 ~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el 614 (840)
.........++++|||||+||||++++++++..+ .++++|+|++|+.+++.+ .++++++
T Consensus 90 ~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~~~-~~eL~~l 148 (246)
T cd06218 90 NGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER--------GIKVTVLLGFRSADDLFL-VEEFEAL 148 (246)
T ss_pred CCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc--------CCceEEEEEccchhhhhh-HHHHHhh
Confidence 7443323578999999999999999999998752 147999999999999754 4444444
No 39
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.85 E-value=1.1e-19 Score=186.47 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=108.0
Q ss_pred EEEEecCceEEEEEeCCCCc---ccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecC---chhHHHHHHH
Q 003191 310 SASCLPCGTVELVLSKPANL---RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLG---EWTENLRDYI 383 (840)
Q Consensus 310 sv~~Lp~~vvrLtI~~p~~~---~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~G---g~TkkL~~~l 383 (840)
+++.+.+++++++++.+... .|+||||+.|+++. .+.|||||+|.+.+ ++.+.|+||..+ +.|+.|.+.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~-~~~l~~~v~~~~~g~~~s~~l~~~~ 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPAD-RDRYRIAVLREPASRGGSRYMHELL 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCC-CCEEEEEEEeccCCCchHHHHHhcC
Confidence 45678899999999987653 89999999999975 35799999998864 588999999864 2576665421
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 384 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP 463 (840)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (840)
.
T Consensus 78 ~------------------------------------------------------------------------------- 78 (211)
T cd06185 78 R------------------------------------------------------------------------------- 78 (211)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecc
Q 003191 464 PQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG 543 (840)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeG 543 (840)
+|+ ++.|+|
T Consensus 79 ---------------------------------------------------------------------~Gd--~v~i~g 87 (211)
T cd06185 79 ---------------------------------------------------------------------VGD--ELEVSA 87 (211)
T ss_pred ---------------------------------------------------------------------CCC--EEEEcC
Confidence 012 577999
Q ss_pred CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191 544 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614 (840)
Q Consensus 544 PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el 614 (840)
|||.+... ...++++|||||+||||++++++++.+. .++++++|++|+.+++.+. +.++++
T Consensus 88 P~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~--------~~~v~l~~~~r~~~~~~~~-~~l~~~ 148 (211)
T cd06185 88 PRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR--------GADFELHYAGRSREDAAFL-DELAAL 148 (211)
T ss_pred CccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC--------CCCEEEEEEeCCCcchhHH-HHHhhh
Confidence 99987543 3467999999999999999999998652 1479999999999998643 344443
No 40
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.84 E-value=2.5e-19 Score=189.89 Aligned_cols=168 Identities=19% Similarity=0.144 Sum_probs=123.1
Q ss_pred cceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 381 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~ 381 (840)
...++.+++.+.++++++++..+. ..|+||||+.|.++.-+....|||||+|.|++ +.++|+||.. |..|+.|.+
T Consensus 5 ~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~--~~l~~~ik~~~~G~~S~~L~~ 81 (248)
T PRK10926 5 VTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDN--PDLEFYLVTVPEGKLSPRLAA 81 (248)
T ss_pred EEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCC--CeEEEEEEEeCCCCcChHHHh
Confidence 356788888899999999998653 37999999999996334445799999999853 5899999986 788887742
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 461 (840)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (840)
++.
T Consensus 82 -l~~---------------------------------------------------------------------------- 84 (248)
T PRK10926 82 -LKP---------------------------------------------------------------------------- 84 (248)
T ss_pred -CCC----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191 462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 541 (840)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V 541 (840)
|+ +|.|
T Consensus 85 ------------------------------------------------------------------------Gd--~v~i 90 (248)
T PRK10926 85 ------------------------------------------------------------------------GD--EVQV 90 (248)
T ss_pred ------------------------------------------------------------------------CC--EEEE
Confidence 12 5789
Q ss_pred ccCcCCCCc-Cc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCC
Q 003191 542 EGPYGHEVP-YH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF 619 (840)
Q Consensus 542 eGPYG~~~~-~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~ 619 (840)
.||+|+... +. ...++++|||||+||||++++++++.+.. ..++++|+|++|+.+|+.+ .++++++. .
T Consensus 91 ~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------~~~~v~l~~g~r~~~d~~~-~~el~~l~---~ 160 (248)
T PRK10926 91 VSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------RFKNLVLVHAARYAADLSY-LPLMQELE---Q 160 (248)
T ss_pred ecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC------CCCcEEEEEeCCcHHHHHH-HHHHHHHH---H
Confidence 999855432 21 13479999999999999999999986432 1357999999999998854 45555553 1
Q ss_pred CCCCceEEEEEEeCCC
Q 003191 620 SDKLNLETFIYVTRET 635 (840)
Q Consensus 620 ~~~~~l~I~iyVTr~~ 635 (840)
....++++...+++++
T Consensus 161 ~~~~~~~v~~~~s~~~ 176 (248)
T PRK10926 161 RYEGKLRIQTVVSRET 176 (248)
T ss_pred hCcCCEEEEEEECCCC
Confidence 1224678888888743
No 41
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.83 E-value=5.5e-19 Score=187.09 Aligned_cols=143 Identities=20% Similarity=0.332 Sum_probs=116.4
Q ss_pred ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191 305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 384 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~ 384 (840)
..++++++.+.+++.++++..+....|+||||++|+++......+|||||+|.+ ++.++|.||..|.+|+.|.+.
T Consensus 6 ~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~G~~t~~l~~l-- 80 (250)
T PRK00054 6 NMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKVGEGTKKLSKL-- 80 (250)
T ss_pred EEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEcChHHHHHhcC--
Confidence 467888999999999999997767789999999999986666678999999987 379999999999999876421
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 464 (840)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (840)
+
T Consensus 81 -~------------------------------------------------------------------------------ 81 (250)
T PRK00054 81 -K------------------------------------------------------------------------------ 81 (250)
T ss_pred -C------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 003191 465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544 (840)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGP 544 (840)
||+ ++.|+||
T Consensus 82 --------------------------------------------------------------------~G~--~v~i~gP 91 (250)
T PRK00054 82 --------------------------------------------------------------------EGD--ELDIRGP 91 (250)
T ss_pred --------------------------------------------------------------------CCC--EEEEEcc
Confidence 013 5889999
Q ss_pred cCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHH
Q 003191 545 YGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 609 (840)
Q Consensus 545 YG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~ 609 (840)
||.........++++|||||+||||++++++++.++. ++++++|++|+.+|+.+.++
T Consensus 92 ~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~--------~~v~l~~~~r~~~d~~~~~e 148 (250)
T PRK00054 92 LGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKKG--------VEVTTVLGARTKDEVIFEEE 148 (250)
T ss_pred cCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHcC--------CcEEEEEEcCCHHHhhhHHH
Confidence 9984332236789999999999999999999987532 36999999999999864433
No 42
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.83 E-value=3.7e-19 Score=187.25 Aligned_cols=144 Identities=25% Similarity=0.358 Sum_probs=113.6
Q ss_pred EEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhcC
Q 003191 309 LSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKS 387 (840)
Q Consensus 309 asv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~ 387 (840)
.+++.+.+++.+++++.+. ...++||||++|+++......+|||||+|.+.+ ++.++|+||..|..|+.|.+ +.
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~~G~~t~~l~~-~~--- 76 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEIRGPKTKLIAE-LK--- 76 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEEcCchHHHHHh-CC---
Confidence 4567788999999998764 368999999999997544568899999999854 57999999999999987742 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 388 ESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGP 467 (840)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (840)
T Consensus 77 -------------------------------------------------------------------------------- 76 (243)
T cd06192 77 -------------------------------------------------------------------------------- 76 (243)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCC
Q 003191 468 HPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGH 547 (840)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~ 547 (840)
||+ ++.|+||||.
T Consensus 77 -----------------------------------------------------------------~G~--~l~i~gP~G~ 89 (243)
T cd06192 77 -----------------------------------------------------------------PGE--KLDVMGPLGN 89 (243)
T ss_pred -----------------------------------------------------------------CCC--EEEEEccCCC
Confidence 012 5789999998
Q ss_pred CCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHH
Q 003191 548 EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE 613 (840)
Q Consensus 548 ~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~e 613 (840)
........++++|||||+||||++++++++.++ .++++++|++|+.+|+.+ .+++++
T Consensus 90 ~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~--------~~~v~l~~~~r~~~d~~~-~~el~~ 146 (243)
T cd06192 90 GFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN--------GNKVTVLAGAKKAKEEFL-DEYFEL 146 (243)
T ss_pred CCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC--------CCeEEEEEecCcHHHHHH-HHHHHh
Confidence 755433478999999999999999999998753 147999999999999754 444443
No 43
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.83 E-value=2.8e-19 Score=202.57 Aligned_cols=87 Identities=15% Similarity=0.404 Sum_probs=65.6
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~ 617 (840)
++.|+||+|.+... ...++++|||||+||||+++++++++++.+. .++++|+|++|+.+++.+.++ ++++.
T Consensus 258 ~v~v~gP~G~f~~~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~~-----~~~v~L~~g~r~~~d~~~~~e-l~~l~-- 328 (409)
T PRK05464 258 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLKS-----KRKISFWYGARSLREMFYVED-FDQLA-- 328 (409)
T ss_pred EEEEEccccCcEec-CCCceEEEEEeccChhHHHHHHHHHHhCCCC-----CceEEEEEecCCHHHhhHHHH-HHHHH--
Confidence 57799999998654 4568999999999999999999998865321 358999999999999865444 44443
Q ss_pred CCCCCCceEEEEEEeCCC
Q 003191 618 FFSDKLNLETFIYVTRET 635 (840)
Q Consensus 618 ~~~~~~~l~I~iyVTr~~ 635 (840)
.+..++++++.++++.
T Consensus 329 --~~~~~~~~~~~~s~~~ 344 (409)
T PRK05464 329 --AENPNFKWHVALSDPL 344 (409)
T ss_pred --HhCCCeEEEEEEcCCC
Confidence 2335677777776543
No 44
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.82 E-value=8e-19 Score=193.19 Aligned_cols=176 Identities=9% Similarity=0.066 Sum_probs=127.6
Q ss_pred ccceEEEEEEEecCceEEEEEeCCC--CcccCCCcEEEEEEc-CC--CCCceeceEeeeCCCCCCCeEEEEEEec--Cch
Q 003191 303 RRTVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVR-EL--SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW 375 (840)
Q Consensus 303 ~~~~~vasv~~Lp~~vvrLtI~~p~--~~~~~PGQhvfL~vP-~i--s~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~ 375 (840)
+..+++.+++.+.+++.++++..+. .+.+.||||+.+.++ .. ..-..++||++|.|++ ++.++|+||+. |.+
T Consensus 52 ~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~~~G~~ 130 (325)
T PTZ00274 52 YEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRKKDGLM 130 (325)
T ss_pred eEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEcCCCcc
Confidence 3567888999999999999997643 578999999998876 22 1235799999999864 57899999995 566
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003191 376 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455 (840)
Q Consensus 376 TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (840)
|+.|++ ++.
T Consensus 131 S~~L~~-lk~---------------------------------------------------------------------- 139 (325)
T PTZ00274 131 TNHLFG-MHV---------------------------------------------------------------------- 139 (325)
T ss_pred cHHHhc-CCC----------------------------------------------------------------------
Confidence 887763 211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT 535 (840)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~ 535 (840)
|+
T Consensus 140 ------------------------------------------------------------------------------Gd 141 (325)
T PTZ00274 140 ------------------------------------------------------------------------------GD 141 (325)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 13
Q ss_pred ceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc
Q 003191 536 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 615 (840)
Q Consensus 536 ~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~ 615 (840)
++.|.||+|....+....++++||||||||||+++++++++++..........+|+|+|++|+.+|+. +.++++++.
T Consensus 142 --~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~-~~~eL~~La 218 (325)
T PTZ00274 142 --KLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHIL-LKGLFDDLA 218 (325)
T ss_pred --EEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhh-HHHHHHHHH
Confidence 57789998876433345589999999999999999999998753210001234899999999999985 455555653
Q ss_pred CCCCCCCCceEEEEEEeCC
Q 003191 616 CPFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~ 634 (840)
. ....+++++..++++
T Consensus 219 ~---~~~~~f~v~~~ls~~ 234 (325)
T PTZ00274 219 R---RYSNRFKVYYTIDQA 234 (325)
T ss_pred H---hCCCcEEEEEEeCCC
Confidence 1 122357777777654
No 45
>PRK05713 hypothetical protein; Provisional
Probab=99.82 E-value=3.2e-19 Score=195.07 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=58.8
Q ss_pred ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL 379 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL 379 (840)
..++.+++.+.+++.+++++.+..+.|+||||+.|.++. -.+|||||+|.|++ ++.++|+||.+ |.+|+.|
T Consensus 93 ~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~~-~~~l~~~I~~~~~G~~s~~l 165 (312)
T PRK05713 93 PARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGE-DPFLEFHIDCSRPGAFCDAA 165 (312)
T ss_pred CeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCCC-CCeEEEEEEEcCCCccchhh
Confidence 568888999999999999987667899999999999863 25799999999864 57899999854 6677765
No 46
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.82 E-value=1.1e-18 Score=184.77 Aligned_cols=144 Identities=18% Similarity=0.307 Sum_probs=113.1
Q ss_pred EEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhh
Q 003191 307 DVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILS 385 (840)
Q Consensus 307 ~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~ 385 (840)
++.+++.+.+++++++++.+.. ..|+||||++|+++.. .++|||||+|.+.+ ++.++|+||..|+.|+.|.+. ..
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~~-~~~~~~~vk~~G~~t~~l~~l-~~ 77 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDPE-KGTITIVVQVVGKSTRELATL-EE 77 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcCC-CCEEEEEEEeCCchHHHHHhc-CC
Confidence 5677888999999999987643 4799999999998632 35799999998753 578999999999999777321 10
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 386 KSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQ 465 (840)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (840)
T Consensus 78 -------------------------------------------------------------------------------- 77 (248)
T cd06219 78 -------------------------------------------------------------------------------- 77 (248)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee-eeccC
Q 003191 466 GPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEGP 544 (840)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V-~VeGP 544 (840)
|+ ++ .++||
T Consensus 78 --------------------------------------------------------------------G~--~v~~i~gP 87 (248)
T cd06219 78 --------------------------------------------------------------------GD--KIHDVVGP 87 (248)
T ss_pred --------------------------------------------------------------------CC--EeeeeecC
Confidence 12 46 69999
Q ss_pred cCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191 545 YGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614 (840)
Q Consensus 545 YG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el 614 (840)
||.+... ...++++|||||+||||++++++++.+.. ++++|+|++|+.+++.+ .++++++
T Consensus 88 ~G~~~~~-~~~~~~lliagG~GiaP~~~~l~~~~~~~--------~~v~l~~~~r~~~~~~~-~~el~~l 147 (248)
T cd06219 88 LGKPSEI-ENYGTVVFVGGGVGIAPIYPIAKALKEAG--------NRVITIIGARTKDLVIL-EDEFRAV 147 (248)
T ss_pred CCCCeec-CCCCeEEEEeCcccHHHHHHHHHHHHHcC--------CeEEEEEEcCCHHHhhh-HHHHHhh
Confidence 9997543 45789999999999999999999987531 47999999999999854 4555454
No 47
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.81 E-value=1.9e-18 Score=181.08 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=57.1
Q ss_pred EEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHH
Q 003191 307 DVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRD 381 (840)
Q Consensus 307 ~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~ 381 (840)
++.+++.+.+++.+++++.+ .+|+||||+.|+++.. ..|||||+|.| +.++|+||..|.+|+.|.+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~----~~l~~~v~~~G~~s~~L~~ 67 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID----GPNSITVKKVGEATSALHD 67 (233)
T ss_pred EEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC----CeEEEEEEecChHHHHHHh
Confidence 67788899999999999864 4899999999999754 35999999987 5899999999999998864
No 48
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.81 E-value=2e-18 Score=186.27 Aligned_cols=142 Identities=18% Similarity=0.310 Sum_probs=112.5
Q ss_pred eEEEEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191 306 VDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 384 (840)
Q Consensus 306 ~~vasv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~ 384 (840)
.++.+++.+.+++.++++..+. ...++||||+.|+++.. -++|||||+|.+.+ ++.++|+||..|..|+.|.+. .
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~--~~~rpySias~~~~-~~~i~l~vk~~G~~T~~L~~l-~ 77 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEK--GERIPLTIADYDRE-KGTITIVFQAVGKSTRKLAEL-K 77 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCC--CCceeeEeeEEcCC-CCEEEEEEEeCCcHHHHHhcC-C
Confidence 3577888899999999998664 24789999999999743 34699999998754 578999999999999988521 0
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 464 (840)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (840)
T Consensus 78 -------------------------------------------------------------------------------- 77 (281)
T PRK06222 78 -------------------------------------------------------------------------------- 77 (281)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee-eecc
Q 003191 465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEG 543 (840)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V-~VeG 543 (840)
||+ ++ .|.|
T Consensus 78 --------------------------------------------------------------------~Gd--~v~~i~G 87 (281)
T PRK06222 78 --------------------------------------------------------------------EGD--SILDVVG 87 (281)
T ss_pred --------------------------------------------------------------------CCC--EEeeEEc
Confidence 012 47 5999
Q ss_pred CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHH
Q 003191 544 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 610 (840)
Q Consensus 544 PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~ 610 (840)
|||++... ..+++++|||||+||||++++++++.++. ++++++|++|+.+++.+.+++
T Consensus 88 P~G~~~~~-~~~~~~llIaGGiGiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~d~~~~~el 145 (281)
T PRK06222 88 PLGKPSEI-EKFGTVVCVGGGVGIAPVYPIAKALKEAG--------NKVITIIGARNKDLLILEDEM 145 (281)
T ss_pred CCCCCccc-CCCCeEEEEeCcCcHHHHHHHHHHHHHCC--------CeEEEEEecCCHHHhhcHHHH
Confidence 99997543 45689999999999999999999986532 379999999999998654443
No 49
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.81 E-value=9.3e-19 Score=198.06 Aligned_cols=87 Identities=15% Similarity=0.345 Sum_probs=65.0
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~ 617 (840)
++.|+||||.+... ...++++|||||+||||+++++++++.+.+ ..++++|+|++|+.+++.+. ++++++.
T Consensus 254 ~v~i~gP~G~f~l~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~-----~~~~v~l~~g~R~~~dl~~~-~el~~l~-- 324 (405)
T TIGR01941 254 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYQ-EDFDQLE-- 324 (405)
T ss_pred EEEEEeccCCCeec-CCCCCEEEEecCcCcchHHHHHHHHHhcCC-----CCCeEEEEEecCCHHHHhHH-HHHHHHH--
Confidence 57789999998653 356789999999999999999998776431 13579999999999998654 4444543
Q ss_pred CCCCCCceEEEEEEeCCC
Q 003191 618 FFSDKLNLETFIYVTRET 635 (840)
Q Consensus 618 ~~~~~~~l~I~iyVTr~~ 635 (840)
.+..+++++++++++.
T Consensus 325 --~~~~~~~~~~~~s~~~ 340 (405)
T TIGR01941 325 --AENPNFVWHVALSDPQ 340 (405)
T ss_pred --HhCCCeEEEEEeCCCC
Confidence 2345677877777643
No 50
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.81 E-value=1.5e-18 Score=189.66 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=65.7
Q ss_pred eeeeccCcCCCCcCc--cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc
Q 003191 538 TASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 615 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~--~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~ 615 (840)
++.|.||+|.+.... ...++++|||||+||||++|++++++.+...+. ....++.|+|++|+.+|+.+ .++++++.
T Consensus 137 ~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~-~~~~~v~L~~g~R~~~d~~~-~deL~~l~ 214 (307)
T PLN03116 137 KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAF-KFGGLAWLFLGVANSDSLLY-DDEFERYL 214 (307)
T ss_pred EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccc-cCCCcEEEEEecCCcccchH-HHHHHHHH
Confidence 688999999875421 334689999999999999999999876532111 11347999999999999854 45555553
Q ss_pred CCCCCCCCceEEEEEEeCCC
Q 003191 616 CPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~~ 635 (840)
. ....+++++..++++.
T Consensus 215 ~---~~~~~~~~~~~~sr~~ 231 (307)
T PLN03116 215 K---DYPDNFRYDYALSREQ 231 (307)
T ss_pred H---hCCCcEEEEEEEccCC
Confidence 1 1123678888787654
No 51
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.81 E-value=3e-18 Score=183.25 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=113.1
Q ss_pred ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191 305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 384 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~ 384 (840)
..++++++.+++++.++++..+ ..++||||+.|+++... .|||||++.+ ++.++|+||..|..|+.|.+ ++
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~---~~~~~~~Ik~~G~~S~~L~~-l~ 79 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG---DGYIDLTIRRVGKVTDEIFN-LK 79 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC---CCEEEEEEEeCCchhhHHHh-CC
Confidence 4678889999999999999864 47899999999998543 3999998864 36899999999999987753 10
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 464 (840)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (840)
T Consensus 80 -------------------------------------------------------------------------------- 79 (263)
T PRK08221 80 -------------------------------------------------------------------------------- 79 (263)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 003191 465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544 (840)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGP 544 (840)
||. ++.|+||
T Consensus 80 --------------------------------------------------------------------~Gd--~v~v~gP 89 (263)
T PRK08221 80 --------------------------------------------------------------------EGD--KLFLRGP 89 (263)
T ss_pred --------------------------------------------------------------------CCC--EEEEECC
Confidence 012 5779999
Q ss_pred cCC-CCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191 545 YGH-EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614 (840)
Q Consensus 545 YG~-~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el 614 (840)
||. +..+....++++|||||+||||++|++++++++.+ ..++++|+|++|+.+++.+ .++++++
T Consensus 90 ~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~-----~~~~v~L~~g~r~~~~l~~-~~el~~~ 154 (263)
T PRK08221 90 YGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ-----EIKSLDLILGFKNPDDILF-KEDLKRW 154 (263)
T ss_pred CCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc-----cCceEEEEEecCCHHHhhH-HHHHHHH
Confidence 998 43332346799999999999999999999976431 1358999999999999855 4555554
No 52
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.80 E-value=3e-18 Score=185.23 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=66.1
Q ss_pred eeeeccCcCCCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191 538 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 616 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~ 616 (840)
+|.|.||+|.+.... ...++++|||||+||||+++++++++.+.... ....+++.|+|++|+.+++.+ .+.++++.
T Consensus 117 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~-~~~~~~v~L~~g~r~~~d~~~-~~el~~l~- 193 (286)
T cd06208 117 DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHAD-YKFTGLAWLFFGVPNSDSLLY-DDELEKYP- 193 (286)
T ss_pred EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc-cCCCCCEEEEEEecCccchhH-HHHHHHHH-
Confidence 578899999875422 23468999999999999999999998652110 012457999999999999754 45555553
Q ss_pred CCCCCCCceEEEEEEeCCC
Q 003191 617 PFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~~ 635 (840)
.....+++++..+++++
T Consensus 194 --~~~~~~~~~~~~~sr~~ 210 (286)
T cd06208 194 --KQYPDNFRIDYAFSREQ 210 (286)
T ss_pred --HhCCCcEEEEEEEcCCC
Confidence 11234678888888754
No 53
>PRK05802 hypothetical protein; Provisional
Probab=99.80 E-value=3e-18 Score=188.34 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=63.6
Q ss_pred cceEEEEEEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR 380 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~ 380 (840)
...++.+++.+.+++.++++..|.. ..++||||++|+++..+.+..|||||++++.+ ++.++|.||..|..|+.|.
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~~G~~T~~L~ 143 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEIRGVKTKKIA 143 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEecChhHHHHh
Confidence 3567888899999999999987643 34799999999998655667899999998754 5889999999999999885
No 54
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.80 E-value=5.4e-18 Score=181.80 Aligned_cols=148 Identities=27% Similarity=0.355 Sum_probs=123.7
Q ss_pred cceEEEEEEEecCceEEEEEeCCCCc--ccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPANL--RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL 379 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~~--~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL 379 (840)
...++.+++...++++.+++..+... .|+||||+-|.++.-+....+-|||+|+|.+ ++.+.|.||+. |+.|+.|
T Consensus 6 ~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~~~G~~S~~L 84 (266)
T COG1018 6 RRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKREDGGGGSNWL 84 (266)
T ss_pred EEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEeCCCcccHHH
Confidence 46688999999999999999988876 4999999999999666678999999999975 46899999998 6888888
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 380 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE 459 (840)
Q Consensus 380 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (840)
++.++.
T Consensus 85 h~~lk~-------------------------------------------------------------------------- 90 (266)
T COG1018 85 HDHLKV-------------------------------------------------------------------------- 90 (266)
T ss_pred HhcCCC--------------------------------------------------------------------------
Confidence 765421
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee
Q 003191 460 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA 539 (840)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V 539 (840)
|+ ++
T Consensus 91 --------------------------------------------------------------------------Gd--~l 94 (266)
T COG1018 91 --------------------------------------------------------------------------GD--TL 94 (266)
T ss_pred --------------------------------------------------------------------------CC--EE
Confidence 24 46
Q ss_pred eeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHH
Q 003191 540 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 609 (840)
Q Consensus 540 ~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~ 609 (840)
.|.+|.|.+..+...-++++||||||||||++||++++.... . ++|.|++++|+.+++.+.++
T Consensus 95 ~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~------~-~~v~l~h~~R~~~~~af~de 157 (266)
T COG1018 95 EVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG------P-ADVVLVHAARTPADLAFRDE 157 (266)
T ss_pred EEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC------C-CCEEEEEecCChhhcchhhH
Confidence 679999998765445558999999999999999999987654 2 57999999999999987654
No 55
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.78 E-value=1.9e-20 Score=173.88 Aligned_cols=80 Identities=31% Similarity=0.661 Sum_probs=0.0
Q ss_pred ceEEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCC--CCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRD 381 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is--~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~ 381 (840)
++++++++.+++++++|+++++.. ++|+||||+||++|.++ .||||||||+|+++ ++.++|+||++||||++|++
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~g~~T~~L~~ 80 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKARGGWTKRLYE 80 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeCCCchHHHHH
Confidence 457788999999999999999886 99999999999999999 56999999999986 58999999999999999999
Q ss_pred HHhhc
Q 003191 382 YILSK 386 (840)
Q Consensus 382 ~l~~~ 386 (840)
.+.+.
T Consensus 81 ~~~~~ 85 (105)
T PF08022_consen 81 HLSES 85 (105)
T ss_dssp -----
T ss_pred HHhhh
Confidence 87653
No 56
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.77 E-value=1.8e-17 Score=177.79 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=64.9
Q ss_pred eeeeccCcC-CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHcc
Q 003191 538 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 615 (840)
Q Consensus 538 ~V~VeGPYG-~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~ 615 (840)
.+.|.||+| .+..+....+++||||||+||||+++++++++...... ....++.|+|++|+. +++.+ .+.++++.
T Consensus 97 ~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~--~~~~~v~l~~g~r~~~~d~~~-~del~~~~ 173 (267)
T cd06182 97 KVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANG--KARGPAWLFFGCRNFASDYLY-REELQEAL 173 (267)
T ss_pred EEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc--ccCCCEEEEEeCCCCcccccH-HHHHHHHH
Confidence 588999999 55433234679999999999999999999998642100 123579999999999 88854 45555553
Q ss_pred CCCCCCCCceEEEEEEeCC
Q 003191 616 CPFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~ 634 (840)
.+..+++++..++++
T Consensus 174 ----~~~~~~~~~~~~S~~ 188 (267)
T cd06182 174 ----KDGALTRLDVAFSRE 188 (267)
T ss_pred ----hCCCcceEEEEEccC
Confidence 234467888777764
No 57
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.77 E-value=1.4e-17 Score=181.47 Aligned_cols=204 Identities=20% Similarity=0.292 Sum_probs=142.2
Q ss_pred cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCC----CCceeceEeeeCCCCCCCeEEEEEEec----
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLEGKYHSSVLIKVL---- 372 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is----~~q~HPFTIaSsp~~~~~~Lsf~IK~~---- 372 (840)
+.+++.+++.+.+++.++++..+. ...++||||+.|+++.-. ....||||++|.+.+ ++.++|+||..
T Consensus 34 ~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~ 112 (300)
T PTZ00319 34 QHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGV 112 (300)
T ss_pred EEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCC
Confidence 456788888999999888887532 367999999999997422 245799999998854 57899999985
Q ss_pred -------CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCC
Q 003191 373 -------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP 445 (840)
Q Consensus 373 -------Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (840)
|..|+.|.+ +
T Consensus 113 ~~~~~~~G~~S~~L~~-l-------------------------------------------------------------- 129 (300)
T PTZ00319 113 HPSFPNGGRLSQHLYH-M-------------------------------------------------------------- 129 (300)
T ss_pred CCCCCCCCChhhhhhc-C--------------------------------------------------------------
Confidence 666666521 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 446 PPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPP 525 (840)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 525 (840)
T Consensus 130 -------------------------------------------------------------------------------- 129 (300)
T PTZ00319 130 -------------------------------------------------------------------------------- 129 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCceeeeeccCcCCCCcCc---------------cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCc
Q 003191 526 PSRHPLLPPTKITASVEGPYGHEVPYH---------------LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPR 590 (840)
Q Consensus 526 ~~~~~~~pg~~~~V~VeGPYG~~~~~~---------------~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~ 590 (840)
.+|+ ++.|+||+|.+...- ...++++|||||+||||+++++++++++.. ..+
T Consensus 130 ------~~Gd--~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~-----~~~ 196 (300)
T PTZ00319 130 ------KLGD--KIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE-----DRT 196 (300)
T ss_pred ------CCCC--EEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCC-----CCc
Confidence 1123 578899999863210 124689999999999999999999986531 124
Q ss_pred eEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCCCCC--CcccccccccccccCCCCC------CCcee
Q 003191 591 NVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPP--LEEGELHKTMSSSIYPVPS------GCAMS 662 (840)
Q Consensus 591 kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~~~~--~~~~~i~~~~~~~f~P~~s------d~~i~ 662 (840)
+++|+|++|+.+++.+.+++. ++. +..+++++..++++..+. ...+.+++..+...+|... +...+
T Consensus 197 ~i~liyg~r~~~dl~~~~eL~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~v 270 (300)
T PTZ00319 197 KVFLVYANQTEDDILLRKELD-EAA-----KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMA 270 (300)
T ss_pred eEEEEEecCCHHHhhHHHHHH-HHh-----hCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEE
Confidence 799999999999997665544 332 334678887777743211 1335555544444545322 34578
Q ss_pred EEecCCch
Q 003191 663 VLVGTGNN 670 (840)
Q Consensus 663 ~v~Gp~~~ 670 (840)
++|||...
T Consensus 271 yiCGp~~m 278 (300)
T PTZ00319 271 LMCGPPPM 278 (300)
T ss_pred EEECCHHH
Confidence 99999774
No 58
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.77 E-value=5.6e-17 Score=172.75 Aligned_cols=147 Identities=24% Similarity=0.383 Sum_probs=115.6
Q ss_pred eEEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEE--EecCchhHHHHHH
Q 003191 306 VDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLI--KVLGEWTENLRDY 382 (840)
Q Consensus 306 ~~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~I--K~~Gg~TkkL~~~ 382 (840)
.++.+++.+++++.++++..+.. +.++||||+.|++|. ....|||++|.+.+ ++.+.|+| ++.|..|+.+.++
T Consensus 10 ~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~-~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 10 YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDD-KGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred cEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCc-CCcEEEEEEEEeCChHHHHHhhc
Confidence 67889999999998888876544 689999999999998 57799999999864 45555555 4579999988765
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 462 (840)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (840)
+.
T Consensus 86 ---k~--------------------------------------------------------------------------- 87 (252)
T COG0543 86 ---KE--------------------------------------------------------------------------- 87 (252)
T ss_pred ---cC---------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec
Q 003191 463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 542 (840)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve 542 (840)
|+ .+.|+
T Consensus 88 -----------------------------------------------------------------------gd--~i~v~ 94 (252)
T COG0543 88 -----------------------------------------------------------------------GD--KIRVR 94 (252)
T ss_pred -----------------------------------------------------------------------CC--EEEEE
Confidence 02 48899
Q ss_pred cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191 543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614 (840)
Q Consensus 543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el 614 (840)
||||+........+.+++||||+|++|++++++++.++. + ..+|+++|++|+.+++.+.++ ++++
T Consensus 95 GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~-----~~~V~~~~G~~~~~dl~~~~e-l~~~ 159 (252)
T COG0543 95 GPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-D-----ANKVTLLYGARTAKDLLLLDE-LEEL 159 (252)
T ss_pred cCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-C-----CceEEEEEeccChhhcccHHH-HHHh
Confidence 999998765334555999999999999999999998754 2 358999999999999965444 4444
No 59
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.77 E-value=3.1e-17 Score=183.12 Aligned_cols=94 Identities=20% Similarity=0.281 Sum_probs=66.3
Q ss_pred eeeeccCcCCCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191 538 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 616 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~ 616 (840)
+|.|.||+|.+.... ....+++|||||+||||+++++++++.+...+. ....++.|+|++|+.+|+. +.++++++.
T Consensus 197 ~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~-~~~~~v~Lf~G~R~~~dll-y~dELe~l~- 273 (367)
T PLN03115 197 EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPTSSSLL-YKEEFEKMK- 273 (367)
T ss_pred EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccc-cCCCcEEEEEccCCHHHhh-HHHHHHHHH-
Confidence 588899999865322 234589999999999999999998765432111 1135799999999999884 445555553
Q ss_pred CCCCCCCceEEEEEEeCCCC
Q 003191 617 PFFSDKLNLETFIYVTRETE 636 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~~~ 636 (840)
.....+++++..++|+++
T Consensus 274 --~~~p~~f~v~~a~SR~~~ 291 (367)
T PLN03115 274 --EKAPENFRLDFAVSREQT 291 (367)
T ss_pred --HhCCCCEEEEEEEcCCCc
Confidence 112347889988987654
No 60
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.76 E-value=2.6e-17 Score=174.14 Aligned_cols=85 Identities=8% Similarity=0.029 Sum_probs=60.2
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcc-hHHHHHHHHHHccC
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESIC 616 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~-dl~wl~~~l~el~~ 616 (840)
+|.|.||.|+........++++|||||+||||+++++++++.+. .+++.|++++|+.+ ++.+ .++++++.
T Consensus 92 ~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-------~~~~~l~~g~r~~~~d~~~-~~el~~~~- 162 (245)
T cd06200 92 SVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAG-------RHRNWLLFGERQAAHDFFC-REELEAWQ- 162 (245)
T ss_pred EEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-------CCCeEEEEecCCccccHhH-HHHHHHHH-
Confidence 58899987754332234578999999999999999999987542 23689999999984 6644 45555543
Q ss_pred CCCCCCCceEEEEEEeCC
Q 003191 617 PFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~ 634 (840)
.+..++++++.++++
T Consensus 163 ---~~~~~~~~~~~~s~~ 177 (245)
T cd06200 163 ---AAGHLARLDLAFSRD 177 (245)
T ss_pred ---HCCCcceEEEEEccC
Confidence 133456677777764
No 61
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.75 E-value=4.1e-17 Score=174.35 Aligned_cols=193 Identities=15% Similarity=0.162 Sum_probs=129.9
Q ss_pred ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191 305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 384 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~ 384 (840)
.++++++...++++..++++.+ +.++||||+.|.++... .||||+++.+ ++.++|+||..|..|..|.+ ++
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~~---~~pySi~~~~---~~~l~~~Vk~~G~~S~~L~~-l~ 77 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKYG---EAPISVSGIG---EGYIDLTIRRVGKVTDEVFT-LK 77 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCCC---ccceecCCCC---CCeEEEEEEeCchhhHHHHc-CC
Confidence 4577777778888888888764 57999999999998532 4899998742 47899999999999987742 10
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 464 (840)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (840)
T Consensus 78 -------------------------------------------------------------------------------- 77 (261)
T TIGR02911 78 -------------------------------------------------------------------------------- 77 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 003191 465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544 (840)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGP 544 (840)
+|+ ++.|+||
T Consensus 78 --------------------------------------------------------------------~Gd--~v~i~gP 87 (261)
T TIGR02911 78 --------------------------------------------------------------------EGD--NLFLRGP 87 (261)
T ss_pred --------------------------------------------------------------------CCC--EEEEecC
Confidence 012 5789999
Q ss_pred cCC-CCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCC
Q 003191 545 YGH-EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL 623 (840)
Q Consensus 545 YG~-~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~ 623 (840)
||. +..+....++++|||||+||||+++++++++++.+ ..++|+|+|++|+.+++.+ .++++++. ...
T Consensus 88 ~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~-----~~~~v~L~~~~r~~~~~~~-~~eL~~l~-----~~~ 156 (261)
T TIGR02911 88 YGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK-----EIKSLNLILGFKTPDDILF-KEDIAEWK-----GNI 156 (261)
T ss_pred CCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc-----cCceEEEEEecCCHHHhhH-HHHHHHHH-----hcC
Confidence 998 43222356799999999999999999999876531 1358999999999999854 44455553 112
Q ss_pred ceEEEEEEeCCCCCC-CcccccccccccccCCCCCCCceeEEecCCch
Q 003191 624 NLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 670 (840)
Q Consensus 624 ~l~I~iyVTr~~~~~-~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~ 670 (840)
+++..+.++.+.. ...+.+.+. +........+...+++|||...
T Consensus 157 --~~~~~~~~~~~~~~~~~g~v~~~-l~~~~~~~~~~~~v~lCGp~~m 201 (261)
T TIGR02911 157 --NLTLTLDEAEEDYKGNIGLVTKY-IPELTLKDIEEVQAIVVGPPIM 201 (261)
T ss_pred --cEEEEEcCCCCCCcCCeeccCHh-HHhccCCCccceEEEEECCHHH
Confidence 3343444332211 222333322 1111111122356899999773
No 62
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.74 E-value=1.3e-16 Score=180.88 Aligned_cols=87 Identities=16% Similarity=0.312 Sum_probs=61.5
Q ss_pred eeeeccCcCCCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191 538 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 616 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~ 616 (840)
+|.|.||||...... ....+++|||||+||||++++++++.+....+ ..++++|+|++|+.+++.+++++ +++.
T Consensus 249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~---~~~~v~L~~G~Rt~~dl~y~~eL-~~l~- 323 (411)
T TIGR03224 249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG---EGGKLMLFFGARTKEELPYFGPL-QKLP- 323 (411)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC---CCCCEEEEEecCccccchHHHHH-HHHH-
Confidence 688999999854321 22468999999999999999999987643111 24589999999999999765554 4442
Q ss_pred CCCCCCCceEEEEEEeCC
Q 003191 617 PFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~ 634 (840)
...+++++.++++
T Consensus 324 -----~~~~~~~~~~sr~ 336 (411)
T TIGR03224 324 -----KDFIDINFAFSRT 336 (411)
T ss_pred -----hcCceEEEEeccC
Confidence 1224555555553
No 63
>PLN02252 nitrate reductase [NADPH]
Probab=99.73 E-value=6.9e-17 Score=197.26 Aligned_cols=208 Identities=19% Similarity=0.256 Sum_probs=148.8
Q ss_pred ccceEEEEEEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec-------
Q 003191 303 RRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL------- 372 (840)
Q Consensus 303 ~~~~~vasv~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~------- 372 (840)
+..+++.+++.++.++.++++..+.. +.+.||||++|+++.-+....||||++|.+++ .+.++|+||..
T Consensus 634 ~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~ 712 (888)
T PLN02252 634 KIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPK 712 (888)
T ss_pred eEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCc
Confidence 35678889999999999998886543 57899999999997444456799999999864 57899999986
Q ss_pred ----CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCC
Q 003191 373 ----GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQ 448 (840)
Q Consensus 373 ----Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (840)
|.+|+.|.+
T Consensus 713 ~p~gG~~S~~L~~------------------------------------------------------------------- 725 (888)
T PLN02252 713 FPNGGLMSQYLDS------------------------------------------------------------------- 725 (888)
T ss_pred cCCCCchhhHHhc-------------------------------------------------------------------
Confidence 444444411
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 449 GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR 528 (840)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 528 (840)
T Consensus 726 -------------------------------------------------------------------------------- 725 (888)
T PLN02252 726 -------------------------------------------------------------------------------- 725 (888)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceeeeeccCcCCCCcC----------ccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEee
Q 003191 529 HPLLPPTKITASVEGPYGHEVPY----------HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV 598 (840)
Q Consensus 529 ~~~~pg~~~~V~VeGPYG~~~~~----------~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWav 598 (840)
+.+|. +|.|.||+|.+... ....++++|||||+||||+++++++++++.++ .++|.|+|++
T Consensus 726 --L~vGd--~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d-----~t~i~Liyg~ 796 (888)
T PLN02252 726 --LPIGD--TIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPED-----KTEMSLVYAN 796 (888)
T ss_pred --CCCCC--EEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccCC-----CCcEEEEEEE
Confidence 11224 57899999985321 12357999999999999999999999875322 3479999999
Q ss_pred cCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC--CCCCcccccccccccccCCCCCCCceeEEecCCchh
Q 003191 599 KKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET--EPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV 671 (840)
Q Consensus 599 R~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~--~~~~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~~ 671 (840)
|+.+|+. +.++++++. .....++++...+|++. ......+.+++.++....+...+...+++|||...+
T Consensus 797 Rt~~Dil-~~eEL~~la---~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vyiCGPp~Mi 867 (888)
T PLN02252 797 RTEDDIL-LREELDRWA---AEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLALMCGPPPMI 867 (888)
T ss_pred CCHHHhh-HHHHHHHHH---HhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEEEeCCHHHH
Confidence 9999985 455566654 12235788888888753 222234556665555555554556788999997743
No 64
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.73 E-value=7.1e-17 Score=173.41 Aligned_cols=205 Identities=19% Similarity=0.240 Sum_probs=165.8
Q ss_pred cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 378 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk 378 (840)
..+++.+.+.++.|+-+.++..+. .+....|||+++.+|..+..-.+|+|-.|++.+ .+.+.|+||.+ |-+|+.
T Consensus 52 ~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y~~G~mS~~ 130 (286)
T KOG0534|consen 52 YPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVYPKGKMSQH 130 (286)
T ss_pred EEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEeccCCcccHH
Confidence 456778888899998777777652 466789999999999777777899999998865 68999999997 777777
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 458 (840)
Q Consensus 379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (840)
|.++
T Consensus 131 l~~L---------------------------------------------------------------------------- 134 (286)
T KOG0534|consen 131 LDSL---------------------------------------------------------------------------- 134 (286)
T ss_pred HhcC----------------------------------------------------------------------------
Confidence 6322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191 459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 538 (840)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~ 538 (840)
.+|+ +
T Consensus 135 -------------------------------------------------------------------------kiGd--~ 139 (286)
T KOG0534|consen 135 -------------------------------------------------------------------------KIGD--T 139 (286)
T ss_pred -------------------------------------------------------------------------CCCC--E
Confidence 0113 6
Q ss_pred eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCC
Q 003191 539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF 618 (840)
Q Consensus 539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~ 618 (840)
|.+.||.|....+...++++.|||||+||||+++++++++.+.++ ..+|+|++++++.+|+ +++++++++..
T Consensus 140 ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d-----~tki~lly~N~te~DI-Llr~eL~~la~-- 211 (286)
T KOG0534|consen 140 VEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPED-----TTKISLLYANKTEDDI-LLREELEELAS-- 211 (286)
T ss_pred EEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCC-----CcEEEEEEecCCcccc-chHHHHHHHHh--
Confidence 889999999765555689999999999999999999999988754 3489999999999998 67888877752
Q ss_pred CCCCCceEEEEEEeCCCCCC-CcccccccccccccCCCCCC-CceeEEecCCc
Q 003191 619 FSDKLNLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSG-CAMSVLVGTGN 669 (840)
Q Consensus 619 ~~~~~~l~I~iyVTr~~~~~-~~~~~i~~~~~~~f~P~~sd-~~i~~v~Gp~~ 669 (840)
....+++++.+++++.+.+ ...+.++++++..+.|.+.+ +....+|||..
T Consensus 212 -~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~ 263 (286)
T KOG0534|consen 212 -KYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPP 263 (286)
T ss_pred -hCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHH
Confidence 2344899999999988443 46788999999899888888 68889999976
No 65
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.72 E-value=4.4e-16 Score=168.87 Aligned_cols=74 Identities=11% Similarity=0.014 Sum_probs=57.3
Q ss_pred cceEEEEEEEec----CceEEEEEeCCC-------CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEe-
Q 003191 304 RTVDVLSASCLP----CGTVELVLSKPA-------NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV- 371 (840)
Q Consensus 304 ~~~~vasv~~Lp----~~vvrLtI~~p~-------~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~- 371 (840)
...++++.+.+. .++.++++..+. ...|.||||+.|..++ ....|||||+|.+. ++.++|+||.
T Consensus 46 ~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g--~~~~R~YSias~p~--~g~l~l~Vk~~ 121 (289)
T cd06201 46 KALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPG--SDVPRFYSLASSSS--DGFLEICVRKH 121 (289)
T ss_pred cceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCC--CCCCceEecCCCCC--CCeEEEEEEeC
Confidence 456788888777 588888888665 4679999999998653 23469999999984 3789999997
Q ss_pred -cCchhHHHHH
Q 003191 372 -LGEWTENLRD 381 (840)
Q Consensus 372 -~Gg~TkkL~~ 381 (840)
.|..|+.|++
T Consensus 122 ~~G~~S~~L~~ 132 (289)
T cd06201 122 PGGLCSGYLHG 132 (289)
T ss_pred CCccchhhHhh
Confidence 4777887753
No 66
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.68 E-value=2e-15 Score=183.25 Aligned_cols=142 Identities=18% Similarity=0.286 Sum_probs=113.8
Q ss_pred eEEEEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191 306 VDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 384 (840)
Q Consensus 306 ~~vasv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~ 384 (840)
+++.+.+.+.+++.++++..+. ...++||||+.|+++..+ +.|||||+|.+.+ ++.++|+||..|..|+.|.+. .
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~-~g~i~~~vk~vG~~T~~L~~l-~ 77 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPE-KGTITLVIQEVGLSTTKLCEL-N 77 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCC-CCEEEEEEEEcCchHHHHhcC-C
Confidence 3577888899999999998664 247899999999997432 4689999998754 578999999999999988631 0
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 464 (840)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (840)
T Consensus 78 -------------------------------------------------------------------------------- 77 (752)
T PRK12778 78 -------------------------------------------------------------------------------- 77 (752)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee-eecc
Q 003191 465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEG 543 (840)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V-~VeG 543 (840)
||+ ++ .|.|
T Consensus 78 --------------------------------------------------------------------~Gd--~v~~v~G 87 (752)
T PRK12778 78 --------------------------------------------------------------------EGD--YITDVVG 87 (752)
T ss_pred --------------------------------------------------------------------CCC--EeCeEeC
Confidence 012 47 6999
Q ss_pred CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHH
Q 003191 544 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 610 (840)
Q Consensus 544 PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~ 610 (840)
|||.+... ...++++|||||+||||++++++++.++. .+++++|+.|+.+++.+.+++
T Consensus 88 P~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~~l~~~~el 145 (752)
T PRK12778 88 PLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAG--------NRVITILGGRSKELIILEDEM 145 (752)
T ss_pred CCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCC--------CeEEEEeccCCHHHhhhHHHH
Confidence 99998653 44579999999999999999999997642 379999999999998655443
No 67
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.65 E-value=5.9e-15 Score=182.24 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=59.1
Q ss_pred cceEEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL 379 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL 379 (840)
...++.+++.+.+++.++++..+.. ..++||||+.|+++..+ +.+||||++.+.+ ++.++|+||..|..|+.|
T Consensus 649 ~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~-~g~i~l~Vk~vG~~T~~L 722 (944)
T PRK12779 649 IPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAE-KGTIDLVVQGMGTSSLEI 722 (944)
T ss_pred eEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCC-CCEEEEEEEeeccHHHHH
Confidence 4567888889999999999987643 46899999999985333 4699999998753 578999999999888766
No 68
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.62 E-value=2.9e-14 Score=149.87 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=47.8
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchH
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL 604 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl 604 (840)
++.+.||+|.+... ...++++|||||+||||++++++++..+ .++++++++|+.+|+
T Consensus 104 ~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~il~~~~~~---------~~~~~~~~~~~~~d~ 160 (235)
T cd06193 104 TLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAAILEELPAD---------ARGTALIEVPDAADE 160 (235)
T ss_pred EEEEECCCCCCCCC-CCcceEEEEeccchHHHHHHHHHhCCCC---------CeEEEEEEECCHHHc
Confidence 68899999998654 3567999999999999999999987431 379999999998655
No 69
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.61 E-value=3e-14 Score=177.20 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=59.9
Q ss_pred EEEEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHH
Q 003191 307 DVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDY 382 (840)
Q Consensus 307 ~vasv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~ 382 (840)
++.+.+.+..++..+++..|. ...++||||+.|+++.. -+.+||||++.+.+ ++.++|.+|..|..|+.|++.
T Consensus 3 ~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~--~errplSIa~~~~~-~g~i~l~vk~vG~~T~~L~~~ 76 (1006)
T PRK12775 3 SIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEG--AERIPLTVADFDRK-KGTITMVVQALGKTTREMMTK 76 (1006)
T ss_pred EEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCC--CeeEEEEecCcCCC-CCEEEEEEEecCcHHHHHHhc
Confidence 567778888999999998765 35789999999998643 24689999987743 578999999999999998654
No 70
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.57 E-value=5e-14 Score=177.99 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=84.4
Q ss_pred eeeeccCcCCC----------CcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHH
Q 003191 538 TASVEGPYGHE----------VPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLL 607 (840)
Q Consensus 538 ~V~VeGPYG~~----------~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl 607 (840)
+|.|.||+|.. ..+....++++|||||+||||+++++++++++.+.+ ..++|+|+|++|+.+++.+
T Consensus 1004 ~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~---~~~~i~Llyg~r~~~dl~~- 1079 (1167)
T PTZ00306 1004 SVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVD---SIESIRLIYAAEDVSELTY- 1079 (1167)
T ss_pred EEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccC---CCceEEEEEEeCCHHHhhH-
Confidence 46677887731 111134578999999999999999999998653111 1358999999999999965
Q ss_pred HHHHHHccCCCCCCCCceEEEEEEeCCCCCC-CcccccccccccccCCCCCCCceeEEecCCch
Q 003191 608 SNFYKESICPFFSDKLNLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 670 (840)
Q Consensus 608 ~~~l~el~~~~~~~~~~l~I~iyVTr~~~~~-~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~ 670 (840)
.++++++. .....+++++..++++.+.. ...+.+++.++.++.+.+......++|||...
T Consensus 1080 ~~eL~~l~---~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCGP~~m 1140 (1167)
T PTZ00306 1080 RELLESYR---KENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGPPVM 1140 (1167)
T ss_pred HHHHHHHH---HHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeCCHHH
Confidence 44555553 11234688888888754322 22355555555566665555667899999763
No 71
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.35 E-value=1.3e-11 Score=139.21 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=67.3
Q ss_pred CCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHH
Q 003191 534 PTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYK 612 (840)
Q Consensus 534 g~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~ 612 (840)
|+.+.+.+.||+|.+.......++++|||||+||||+++++++.....+.+. ...++.|+|++|+. +|+. +.++++
T Consensus 209 Gd~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~--~~~~v~L~~G~R~~~~d~l-y~~el~ 285 (384)
T cd06206 209 GDSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGR--KLAPALLFFGCRHPDHDDL-YRDELE 285 (384)
T ss_pred CCeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCC--CcCCEEEEEeCCCCCcccc-hHHHHH
Confidence 3566787899999875433456789999999999999999999865421111 23579999999999 6664 455555
Q ss_pred HccCCCCCCCCceEEEEEEeCCC
Q 003191 613 ESICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 613 el~~~~~~~~~~l~I~iyVTr~~ 635 (840)
++. +..++++...+++++
T Consensus 286 ~~~-----~~~~~~l~~a~Sr~~ 303 (384)
T cd06206 286 EWE-----AAGVVSVRRAYSRPP 303 (384)
T ss_pred HHH-----HCCCeEEEEEecccC
Confidence 553 134577777777753
No 72
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.33 E-value=1.8e-11 Score=138.00 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=63.8
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHccC
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC 616 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~~ 616 (840)
++.|.||+|.+........+++|||||+||||+++++++.....+.+ ....++.|+|++|+. +|+ .+.++++++.
T Consensus 213 ~v~v~~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~--~~~~~~~L~~G~R~~~~d~-~y~~el~~~~- 288 (382)
T cd06207 213 RVTVFIKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQG--PEIGPVLLYFGCRHEDKDY-LYKEELEEYE- 288 (382)
T ss_pred EEEEEEECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcC--ccCCCEEEEECCCCCCccc-cHHHHHHHHH-
Confidence 57788999986543233568999999999999999999976542111 124689999999998 666 4555555553
Q ss_pred CCCCCCCceEEEEEEeCCC
Q 003191 617 PFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~~ 635 (840)
.+...+++++..+|++
T Consensus 289 ---~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 289 ---KSGVLTTLGTAFSRDQ 304 (382)
T ss_pred ---hCCCCceEEEEecCCC
Confidence 1334467777777643
No 73
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.29 E-value=2.1e-11 Score=136.53 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=59.6
Q ss_pred eeeeccCcC-CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHcc
Q 003191 538 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 615 (840)
Q Consensus 538 ~V~VeGPYG-~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~ 615 (840)
+|.+.||.| .+........+++|||||+||||+++++++.+... ...++.|+|++|+. +|+ .+.++++++.
T Consensus 195 ~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~------~~~~~~L~~G~R~~~~D~-~y~~el~~~~ 267 (360)
T cd06199 195 TVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG------AKGKNWLFFGERHFATDF-LYQDELQQWL 267 (360)
T ss_pred EEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc------CCCcEEEEEcCCCCccch-hHHHHHHHHH
Confidence 466666554 45432233579999999999999999999887543 13478999999997 566 4556565553
Q ss_pred CCCCCCCCceEEEEEEeCCC
Q 003191 616 CPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~~ 635 (840)
.....++++..++|+.
T Consensus 268 ----~~~~~~~~~~a~Sr~~ 283 (360)
T cd06199 268 ----KDGVLTRLDTAFSRDQ 283 (360)
T ss_pred ----HcCCCeEEEEEEccCC
Confidence 1334566777777753
No 74
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.26 E-value=4.2e-11 Score=142.17 Aligned_cols=86 Identities=10% Similarity=0.109 Sum_probs=56.0
Q ss_pred eeeeccCcC-CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecC-cchHHHHHHHHHHcc
Q 003191 538 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESI 615 (840)
Q Consensus 538 ~V~VeGPYG-~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~-~~dl~wl~~~l~el~ 615 (840)
+|.|.||.| .+....+...+++|||||+||||+++++++...+.. ..++.|+|++|+ .+|+. +.+++++..
T Consensus 432 ~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~------~g~~~LffG~R~~~~D~l-y~~El~~~~ 504 (597)
T TIGR01931 432 TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA------KGKNWLFFGNPHFTTDFL-YQVEWQNYL 504 (597)
T ss_pred EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC------CCCEEEEECCCCCCcchh-HHHHHHHHH
Confidence 355666554 453322344689999999999999999998876531 347999999999 56764 445554443
Q ss_pred CCCCCCCCceEEEEEEeCC
Q 003191 616 CPFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~ 634 (840)
.+....+++...+|+
T Consensus 505 ----~~~~l~~l~~afSRd 519 (597)
T TIGR01931 505 ----KKGVLTKMDLAFSRD 519 (597)
T ss_pred ----HcCCCceeEEEEecC
Confidence 122223455556663
No 75
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.24 E-value=2.2e-10 Score=129.99 Aligned_cols=94 Identities=11% Similarity=0.163 Sum_probs=61.5
Q ss_pred eeeecc-CcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHc
Q 003191 538 TASVEG-PYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES 614 (840)
Q Consensus 538 ~V~VeG-PYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el 614 (840)
++.+.| |.|.+..... ...+++|||||+||||+.+++++.....+.+......++.|+|++|+. +|+. +.++++++
T Consensus 222 ~v~i~~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~-y~~El~~~ 300 (398)
T cd06203 222 KVPFYLRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYL-FRDELEEF 300 (398)
T ss_pred EEEEEEecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchh-HHHHHHHH
Confidence 466667 5666543222 357899999999999999999987653211111124579999999998 5664 45555555
Q ss_pred cCCCCCCCCceEEEEEEeCCCC
Q 003191 615 ICPFFSDKLNLETFIYVTRETE 636 (840)
Q Consensus 615 ~~~~~~~~~~l~I~iyVTr~~~ 636 (840)
. .+....++.+.++|+++
T Consensus 301 ~----~~~~~~~~~~a~SRd~~ 318 (398)
T cd06203 301 L----EEGILTRLIVAFSRDEN 318 (398)
T ss_pred H----HcCCCceEEEEECCCCC
Confidence 3 12334467777777543
No 76
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.23 E-value=8.6e-11 Score=124.20 Aligned_cols=98 Identities=15% Similarity=0.351 Sum_probs=79.7
Q ss_pred CCCCCCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHH
Q 003191 527 SRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSL 606 (840)
Q Consensus 527 ~~~~~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~w 606 (840)
.-++|.||+ +|.|.||||.+.-. +....+|||.||.|.+|+-|.+-|.+.+.+. .|++.|-++.|+..+. +
T Consensus 250 yi~sLKpGD--KvtisGPfGEfFaK-dtdaemvFigGGAGmapmRSHIfDqL~rlhS-----kRkis~WYGARS~rE~-f 320 (410)
T COG2871 250 YIWSLKPGD--KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLHS-----KRKISFWYGARSLREM-F 320 (410)
T ss_pred eEEeecCCC--eEEEeccchhhhhc-cCCCceEEEecCcCcCchHHHHHHHHHhhcc-----cceeeeeeccchHHHh-H
Confidence 567788999 68899999997654 5667899999999999999999999987643 4699999999999887 4
Q ss_pred HHHHHHHccCCCCCCCCceEEEEEEeCCCCC
Q 003191 607 LSNFYKESICPFFSDKLNLETFIYVTRETEP 637 (840)
Q Consensus 607 l~~~l~el~~~~~~~~~~l~I~iyVTr~~~~ 637 (840)
+.+..+++. .+..+++-|+.++.+..+
T Consensus 321 Y~Ed~d~L~----ae~pNF~wH~aLSdplpE 347 (410)
T COG2871 321 YQEDFDQLQ----AENPNFHWHLALSDPLPE 347 (410)
T ss_pred HHHHHHHHH----hhCCCcEEEEEecCCCCc
Confidence 556666664 467889999998876543
No 77
>PRK06214 sulfite reductase; Provisional
Probab=99.11 E-value=5.4e-10 Score=130.50 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=63.0
Q ss_pred CCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcc-hHHHHHHHHH
Q 003191 534 PTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYK 612 (840)
Q Consensus 534 g~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~-dl~wl~~~l~ 612 (840)
|+.+++.+.+|+| +....+....+||||||+||||+++++++.+... ...++.|+|++|+.+ |+ .+.++++
T Consensus 363 Gd~V~v~i~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~------~~g~~~LffG~R~~~~D~-ly~dEL~ 434 (530)
T PRK06214 363 GTRVRVYVQKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATK------APGRNWLFFGHQRSATDF-FYEDELN 434 (530)
T ss_pred CCEEEEEecCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc------CCCCeEEEEEecCChhhh-HHHHHHH
Confidence 4667788888888 5432234468999999999999999999876542 134689999997654 55 4566666
Q ss_pred HccCCCCCCCCceEEEEEEeCCCC
Q 003191 613 ESICPFFSDKLNLETFIYVTRETE 636 (840)
Q Consensus 613 el~~~~~~~~~~l~I~iyVTr~~~ 636 (840)
++. ......++++..+|+..
T Consensus 435 ~l~----~~g~l~~l~~afSRd~~ 454 (530)
T PRK06214 435 GLK----AAGVLTRLSLAWSRDGE 454 (530)
T ss_pred HHH----HhCCceEEEEEEecCCC
Confidence 653 12334457777887653
No 78
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.09 E-value=1.9e-10 Score=105.61 Aligned_cols=48 Identities=31% Similarity=0.618 Sum_probs=39.5
Q ss_pred EEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191 560 LVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614 (840)
Q Consensus 560 LIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el 614 (840)
|||||+||||+++++++++.+. . .++|+|+|++|+.+++.+. ++++++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~-~-----~~~v~l~~~~r~~~~~~~~-~~l~~~ 48 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN-D-----NRKVTLFYGARTPEDLLFR-DELEAL 48 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT-C-----TSEEEEEEEESSGGGSTTH-HHHHHH
T ss_pred CeecceeHHHHHHHHHHHHHhC-C-----CCCEEEEEEEcccccccch-hHHHHH
Confidence 7999999999999999999873 2 4589999999999998544 444444
No 79
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.09 E-value=1.6e-09 Score=123.59 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=60.7
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHccC
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC 616 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~~ 616 (840)
++.+.+|.|.+........+++|||||+||||+++++++.....+.+. ...++.|+|++|+. +|+. +.++++++.
T Consensus 248 ~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~--~~~~v~L~~G~R~~~~d~l-y~~el~~~~- 323 (416)
T cd06204 248 KVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGK--KVGPTLLFFGCRHPDEDFI-YKDELEEYA- 323 (416)
T ss_pred eEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccC--ccCCEEEEEcCCCCCcccc-hHHHHHHHH-
Confidence 344556778764332345799999999999999999998764321111 23579999999998 5664 455555553
Q ss_pred CCCCCCCceEEEEEEeCC
Q 003191 617 PFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~ 634 (840)
....+++++..++|+
T Consensus 324 ---~~~~~~~l~~a~Sr~ 338 (416)
T cd06204 324 ---KLGGLLELVTAFSRE 338 (416)
T ss_pred ---HcCCceEEEEEECcC
Confidence 123456777777764
No 80
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.01 E-value=5.1e-09 Score=119.20 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=52.9
Q ss_pred cCCceEEEEEcCCCchhhHHHHHHHHHhhc--cCCCCCCceEEEEEeecCc-chHHHHHHHHHHccCCCCCCCCceEEEE
Q 003191 553 LMYENLILVAGGIGISPFLAILSDILHRIN--EGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESICPFFSDKLNLETFI 629 (840)
Q Consensus 553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~--~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~~~~~~~~~~l~I~i 629 (840)
....+++|||||+||||+.+++++.....+ ........++.|++++|+. +|. .+.++++++. ......+++.
T Consensus 244 ~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~-ly~~El~~~~----~~~~~~~~~~ 318 (406)
T cd06202 244 DPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDD-IYKEETEEAK----NKGVLTEVYT 318 (406)
T ss_pred CCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCccc-chHHHHHHHH----HcCCCceEEE
Confidence 345789999999999999999998654321 0011124689999999999 555 3466666653 2334456777
Q ss_pred EEeCCC
Q 003191 630 YVTRET 635 (840)
Q Consensus 630 yVTr~~ 635 (840)
.++|++
T Consensus 319 a~SR~~ 324 (406)
T cd06202 319 ALSREP 324 (406)
T ss_pred EEcCCC
Confidence 788753
No 81
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=98.83 E-value=7.9e-09 Score=122.82 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=60.3
Q ss_pred eeeeccCcCC-CCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHcc
Q 003191 538 TASVEGPYGH-EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 615 (840)
Q Consensus 538 ~V~VeGPYG~-~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~ 615 (840)
++.|.||.|+ +....+...+++|||+|+||||+.+++++...+. ...++.|+|++|+. +|. .++++++++.
T Consensus 435 ~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------~~~~~~LffG~R~~~~D~-lY~~El~~~~ 507 (600)
T PRK10953 435 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG------APGKNWLFFGNPHFTEDF-LYQVEWQRYV 507 (600)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC------CCCCeEEEeeccCCccch-hHHHHHHHHH
Confidence 4667777764 4332234578999999999999999999886543 13479999999994 454 5666666654
Q ss_pred CCCCCCCCceEEEEEEeCCCC
Q 003191 616 CPFFSDKLNLETFIYVTRETE 636 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~~~ 636 (840)
. +...-+++...+|++.
T Consensus 508 ~----~g~l~~l~~afSRd~~ 524 (600)
T PRK10953 508 K----EGLLTRIDLAWSRDQK 524 (600)
T ss_pred H----cCCcceEEEEECCCCC
Confidence 1 1222246677777653
No 82
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.73 E-value=5.8e-08 Score=88.37 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=60.5
Q ss_pred eEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191 306 VDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR 380 (840)
Q Consensus 306 ~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~ 380 (840)
+++.+++.+.+++.++++..+. ...+.||||+.|+++.-+...++|||++|.+++ ++.++|+||.. |..|+.|.
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEECTTSHHHHHHH
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEeccCCHHHHHHH
Confidence 5788899999999888887552 357999999999999445567899999999864 57999999998 88899884
Q ss_pred H
Q 003191 381 D 381 (840)
Q Consensus 381 ~ 381 (840)
+
T Consensus 81 ~ 81 (99)
T PF00970_consen 81 Q 81 (99)
T ss_dssp T
T ss_pred h
Confidence 3
No 83
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.68 E-value=1.7e-07 Score=115.14 Aligned_cols=77 Identities=23% Similarity=0.148 Sum_probs=61.3
Q ss_pred cceEEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCC--CC-ceeceEeeeCCCCCCCeEEEEEEecCchhHHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELS--WL-QWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL 379 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is--~~-q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL 379 (840)
...++.+.+.+.+++.++++..|.. -.++||||+.|+.++.+ .+ +..||||++.+.+ ++.++|++|..|..|+.|
T Consensus 791 l~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvVGkgT~~L 869 (1028)
T PRK06567 791 LTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEVGKSTSLC 869 (1028)
T ss_pred hceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEEChHHHHH
Confidence 3457888899999999999987653 35889999999986422 22 4468999998754 578999999999999988
Q ss_pred HH
Q 003191 380 RD 381 (840)
Q Consensus 380 ~~ 381 (840)
.+
T Consensus 870 s~ 871 (1028)
T PRK06567 870 KT 871 (1028)
T ss_pred hc
Confidence 54
No 84
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=9.2e-08 Score=111.64 Aligned_cols=22 Identities=45% Similarity=0.972 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 003191 452 PPGPPLQEEGPPPQGPHPPVPP 473 (840)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~ 473 (840)
||+||+.+.|++||+|+||+|+
T Consensus 544 pPppPPlpggag~PPPPpplPg 565 (1102)
T KOG1924|consen 544 PPPPPPLPGGAGPPPPPPPLPG 565 (1102)
T ss_pred CCCCCCCCCCCCCCccCCCCCc
Confidence 3334444444444444444443
No 85
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=1.4e-06 Score=101.96 Aligned_cols=7 Identities=29% Similarity=0.264 Sum_probs=3.6
Q ss_pred eccCcCC
Q 003191 541 VEGPYGH 547 (840)
Q Consensus 541 VeGPYG~ 547 (840)
+|+|.-.
T Consensus 622 ~e~~Mrr 628 (1102)
T KOG1924|consen 622 PEVPMRR 628 (1102)
T ss_pred CCCcccc
Confidence 4555544
No 86
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=98.28 E-value=1.8e-06 Score=81.16 Aligned_cols=44 Identities=32% Similarity=0.612 Sum_probs=39.0
Q ss_pred cccchHHHHHHHHHHHHHhchhhhh-hccchhHHHhhhhHHHHHH
Q 003191 227 IANFPGVISLLAGLMMWATSFHPVR-KHFFQLFFYTHQLYVVFVV 270 (840)
Q Consensus 227 ~~~~~GvvAlv~l~lL~vtSl~~iR-r~~YElF~~~H~L~ivflv 270 (840)
..+.+|+++++++++|+++|++++| |+.||.|+++|++++++++
T Consensus 78 ~~~~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~~H~~~~~~~~ 122 (125)
T PF01794_consen 78 PYNLTGIIALLLLLILAVTSFPWIRRRRNYEIFYYLHILFYIAFL 122 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999 8899999999999864443
No 87
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=98.01 E-value=8.4e-05 Score=88.58 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=58.6
Q ss_pred cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191 553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT 632 (840)
Q Consensus 553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT 632 (840)
+.-.+++|||-|+||+||.+++++.....+++...... +.|++++|++++...+++++++.. ......++..-++
T Consensus 489 dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~----~~~~l~~l~~A~S 563 (645)
T KOG1158|consen 489 DPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYK----KAGILTRLDVAFS 563 (645)
T ss_pred CCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHH----hcCcchhheeeee
Confidence 34568999999999999999999988776544322233 899999999999888888887642 2334455666777
Q ss_pred CCC
Q 003191 633 RET 635 (840)
Q Consensus 633 r~~ 635 (840)
|+.
T Consensus 564 Req 566 (645)
T KOG1158|consen 564 REQ 566 (645)
T ss_pred ccC
Confidence 765
No 88
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=97.90 E-value=0.00031 Score=83.59 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCC
Q 003191 555 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 555 yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~ 634 (840)
...++||+-|+||+||.+++++-..+... .++.|++++|+.++-.++++++++.. ......++....+|+
T Consensus 440 ~~PiIMIG~GTGIAPFRafvq~r~~~~~~------gk~wLfFG~R~~~~DfLY~~Ewe~~~----~~G~~~~l~~AfSRd 509 (587)
T COG0369 440 ETPIIMIGPGTGIAPFRAFVQERAANGAE------GKNWLFFGCRHFTEDFLYQEEWEEYL----KDGVLTRLDLAFSRD 509 (587)
T ss_pred CCceEEEcCCCCchhHHHHHHHHHhcccc------CceEEEecCCCCccchhhHHHHHHHH----hcCCceeEEEEEeec
Confidence 38899999999999999999998766422 27999999999655556777776532 233457788888887
Q ss_pred CC
Q 003191 635 TE 636 (840)
Q Consensus 635 ~~ 636 (840)
++
T Consensus 510 q~ 511 (587)
T COG0369 510 QE 511 (587)
T ss_pred CC
Confidence 64
No 89
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=97.36 E-value=0.00088 Score=71.61 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=42.8
Q ss_pred ccceEEEEEEEecCceEEEEEeCC-C---CcccCCCcEEEEEEc--CCCCCceeceEeeeCCCCCCCeEEEEEEec
Q 003191 303 RRTVDVLSASCLPCGTVELVLSKP-A---NLRYNALSFFFLQVR--ELSWLQWHPFSVSSSPLEGKYHSSVLIKVL 372 (840)
Q Consensus 303 ~~~~~vasv~~Lp~~vvrLtI~~p-~---~~~~~PGQhvfL~vP--~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~ 372 (840)
...+.+...+..++|+.++++... . .....||||+-+.-- +.+.-.-+=++.+...+...+.++|.+|..
T Consensus 149 ~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~ 224 (385)
T KOG3378|consen 149 EVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV 224 (385)
T ss_pred ccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh
Confidence 356778888888899999988632 2 235789999988642 222111111222222222357899999887
No 90
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=94.69 E-value=0.087 Score=63.37 Aligned_cols=7 Identities=43% Similarity=0.468 Sum_probs=3.3
Q ss_pred ccCCCCC
Q 003191 501 SETEPQV 507 (840)
Q Consensus 501 ~~~~~~~ 507 (840)
+.++||.
T Consensus 324 s~~~p~p 330 (830)
T KOG1923|consen 324 SSGAPQP 330 (830)
T ss_pred cCCCCCC
Confidence 4444543
No 91
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=93.13 E-value=0.27 Score=59.34 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=3.4
Q ss_pred eeeeccC
Q 003191 538 TASVEGP 544 (840)
Q Consensus 538 ~V~VeGP 544 (840)
+..+.|+
T Consensus 381 P~qv~~t 387 (830)
T KOG1923|consen 381 PIQVKGT 387 (830)
T ss_pred ccccccc
Confidence 3445553
No 92
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=93.11 E-value=0.13 Score=67.12 Aligned_cols=7 Identities=0% Similarity=-0.106 Sum_probs=3.2
Q ss_pred cccchhh
Q 003191 417 RNLMYEN 423 (840)
Q Consensus 417 ~~~~~~~ 423 (840)
.||..+.
T Consensus 1660 nWYLrS~ 1666 (2039)
T PRK15319 1660 DWYLASK 1666 (2039)
T ss_pred CceEeeC
Confidence 3554444
No 93
>PHA03247 large tegument protein UL36; Provisional
Probab=88.12 E-value=2.9 Score=56.83 Aligned_cols=6 Identities=33% Similarity=0.955 Sum_probs=2.5
Q ss_pred ccCCCC
Q 003191 776 LYGSRP 781 (840)
Q Consensus 776 hyggRP 781 (840)
+||-||
T Consensus 3086 ~~~~~~ 3091 (3151)
T PHA03247 3086 QFGPPP 3091 (3151)
T ss_pred ccCCCC
Confidence 444444
No 94
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=88.12 E-value=2.5 Score=49.22 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=12.1
Q ss_pred EEEcCCCCCceeceEeee
Q 003191 339 LQVRELSWLQWHPFSVSS 356 (840)
Q Consensus 339 L~vP~is~~q~HPFTIaS 356 (840)
-+++.+++-|.|+|..+-
T Consensus 243 ~h~~hVgwd~~~gf~~~~ 260 (569)
T KOG3671|consen 243 PHIPHVGWDEQVGFDSAP 260 (569)
T ss_pred ccccccCCCcCCCcccCC
Confidence 345566666888988754
No 95
>COG2717 Predicted membrane protein [Function unknown]
Probab=87.79 E-value=0.89 Score=47.83 Aligned_cols=72 Identities=21% Similarity=0.120 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHHhchhhhhhccchhHHHhhhhHHHHHHHhhhccccc-----eeeehhhh-HHHHHHHHHhhhhc
Q 003191 230 FPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDF-----VFSMAAGG-IFLFILDRFLRFCQ 301 (840)
Q Consensus 230 ~~GvvAlv~l~lL~vtSl~~iRr~~YElF~~~H~L~ivflv~l~~H~~~~-----~~~~v~~~-ialw~lDRllR~~r 301 (840)
..|++|+++|..|.+||..++|||.=..|...|.+..++.+...+|..-. ....++.. .+.+.+.|+.+..+
T Consensus 118 tiG~iaflll~pLalTS~k~~~rrlG~rW~~LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~~k~~~ 195 (209)
T COG2717 118 TIGMIAFLLLIPLALTSFKWVRRRLGKRWKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTRS 195 (209)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999854999999999988899999997421 11222222 23567778776653
No 96
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=87.78 E-value=2.1 Score=52.33 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCCCC
Q 003191 504 EPQVGPPPPVPPPQGS 519 (840)
Q Consensus 504 ~~~~~~~p~~~~~~~~ 519 (840)
.++++++|+++.++++
T Consensus 735 ~~~~~~~~~~~~~~~~ 750 (759)
T PF05518_consen 735 VAPAPPAPAPHVPPGA 750 (759)
T ss_pred cccCCCCCCCCCCCcc
Confidence 4455555555555444
No 97
>PRK15313 autotransport protein MisL; Provisional
Probab=86.67 E-value=1.1 Score=55.91 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=5.1
Q ss_pred eEEEEEEecCc
Q 003191 364 HSSVLIKVLGE 374 (840)
Q Consensus 364 ~Lsf~IK~~Gg 374 (840)
.-.+.|+..||
T Consensus 498 ~T~v~V~N~GG 508 (955)
T PRK15313 498 NTFVAVNNIGG 508 (955)
T ss_pred eEEEEEEeCCC
Confidence 34455555443
No 98
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=86.49 E-value=2.7 Score=48.95 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=7.3
Q ss_pred cCCCchhhHHHHH
Q 003191 563 GGIGISPFLAILS 575 (840)
Q Consensus 563 GGsGITP~lsiL~ 575 (840)
+|.|=.-++.-||
T Consensus 491 ~~dgR~~LmaqIR 503 (569)
T KOG3671|consen 491 SGDGRDALMAQIR 503 (569)
T ss_pred CcccHHHHHHHHH
Confidence 6667655554444
No 99
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=83.63 E-value=1.4 Score=46.41 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHHHhchhhhhhc-cchhHHHhhhhHHHHHHHhhhcc
Q 003191 230 FPGVISLLAGLMMWATSFHPVRKH-FFQLFFYTHQLYVVFVVFLALHV 276 (840)
Q Consensus 230 ~~GvvAlv~l~lL~vtSl~~iRr~-~YElF~~~H~L~ivflv~l~~H~ 276 (840)
..|.+|++.++.|.+||....||+ .| .|..+|.+..+++++...|.
T Consensus 118 ~~G~ia~~lLl~LaiTS~~~~~rrLg~-~Wk~LH~l~Y~a~~L~~~H~ 164 (205)
T PRK05419 118 TVGMAAFLILLPLALTSTRASQRRLGK-RWQKLHRLVYLIAILAPLHY 164 (205)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998886 67 89999999776667888884
No 100
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.73 E-value=6.3 Score=44.34 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=9.1
Q ss_pred chHHHHHHHHHHHHHhchhhhh
Q 003191 230 FPGVISLLAGLMMWATSFHPVR 251 (840)
Q Consensus 230 ~~GvvAlv~l~lL~vtSl~~iR 251 (840)
+.|+++ +.=-.++.-++|-
T Consensus 267 i~svva---l~~Tyat~epFiD 285 (488)
T KOG3895|consen 267 IASVVA---LTKTYATAEPFID 285 (488)
T ss_pred HHHHHH---HHhhhhhcccccc
Confidence 444444 3344555555553
No 101
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=75.16 E-value=4.1 Score=45.02 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=23.7
Q ss_pred CCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHH
Q 003191 779 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAK 815 (840)
Q Consensus 779 gRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~ 815 (840)
||.+ ++++.++.......++-|++|||++|.+.++.
T Consensus 235 g~It-~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~ 270 (286)
T KOG0534|consen 235 GFIT-KDLIKEHLPPPKEGETLVLICGPPPMINGAAQ 270 (286)
T ss_pred CccC-HHHHHhhCCCCCCCCeEEEEECCHHHHhHHHH
Confidence 4444 45555554443333799999999999985433
No 102
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=74.78 E-value=5.5 Score=46.66 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=45.1
Q ss_pred CCCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchH
Q 003191 530 PLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL 604 (840)
Q Consensus 530 ~~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl 604 (840)
.|.||+.+++-|+= |+....-.....++||+-|+||||+.+++++-+.+.+ ...-|+++||+.+.-
T Consensus 409 sL~~g~~i~~~v~~--g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~~-------~~~~lFfGCR~K~~D 474 (574)
T KOG1159|consen 409 SLKPGDEIPIKVRP--GTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQGD-------KENVLFFGCRNKDKD 474 (574)
T ss_pred hcCCCCeEEEEEec--CccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhcc-------CCceEEEecccCCcc
Confidence 35677877777762 3321111235699999999999999999998776431 133778899987643
No 103
>PHA03378 EBNA-3B; Provisional
Probab=74.19 E-value=41 Score=41.02 Aligned_cols=12 Identities=25% Similarity=0.146 Sum_probs=8.1
Q ss_pred hHHHHHHHHHhh
Q 003191 570 FLAILSDILHRI 581 (840)
Q Consensus 570 ~lsiL~~Ll~~~ 581 (840)
.-.||+.|+...
T Consensus 821 ~k~ilrqlltgg 832 (991)
T PHA03378 821 TKQILRQLLTGG 832 (991)
T ss_pred HHHHHHHHhhcc
Confidence 356788887654
No 104
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=70.46 E-value=22 Score=43.76 Aligned_cols=14 Identities=14% Similarity=-0.332 Sum_probs=7.4
Q ss_pred HHHHHHHhhchhcc
Q 003191 174 SIWMLELTGLRLDT 187 (840)
Q Consensus 174 ~~~~l~~va~RtGi 187 (840)
-.+.+.-+++++|.
T Consensus 127 ~IqpLlDm~~~s~~ 140 (894)
T KOG0132|consen 127 IIQPLLDMADGSGL 140 (894)
T ss_pred HHHHHHHHHhccCc
Confidence 34445555555555
No 105
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=70.31 E-value=3.2 Score=52.34 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=5.8
Q ss_pred HHhhheeeeCCCC
Q 003191 688 VALLNILYVNPFN 700 (840)
Q Consensus 688 ~~~~~~~~~~~~~ 700 (840)
-.+-...|+|-|+
T Consensus 269 ~~ird~ny~Ylf~ 281 (2365)
T COG5178 269 ESIRDVNYVYLFS 281 (2365)
T ss_pred HHhccccEEEEec
Confidence 3334444555444
No 106
>PRK15313 autotransport protein MisL; Provisional
Probab=68.71 E-value=11 Score=47.55 Aligned_cols=8 Identities=25% Similarity=0.356 Sum_probs=3.8
Q ss_pred hhchhccc
Q 003191 181 TGLRLDTM 188 (840)
Q Consensus 181 va~RtGii 188 (840)
++||.=|.
T Consensus 221 ~gd~~~i~ 228 (955)
T PRK15313 221 VGNRAHIV 228 (955)
T ss_pred ecccceEE
Confidence 45555443
No 107
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=67.01 E-value=12 Score=43.77 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=9.3
Q ss_pred eeeeccCcCCCC
Q 003191 538 TASVEGPYGHEV 549 (840)
Q Consensus 538 ~V~VeGPYG~~~ 549 (840)
.+.++||.|-.+
T Consensus 291 ~~~~~~~~Gv~~ 302 (817)
T KOG1925|consen 291 DVKLAGGHGVSA 302 (817)
T ss_pred cceecCCCCCcc
Confidence 477899999754
No 108
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=65.68 E-value=7.8 Score=45.30 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=8.2
Q ss_pred CCCCHHHHHHhh
Q 003191 779 SRPDFKEIFGST 790 (840)
Q Consensus 779 gRPdl~~I~~~~ 790 (840)
.|-|++++.+.+
T Consensus 544 AkVDf~qL~DNL 555 (817)
T KOG1925|consen 544 AKVDFEQLTDNL 555 (817)
T ss_pred hhccHHHHHHHH
Confidence 466668877766
No 109
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=62.48 E-value=21 Score=46.06 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=7.2
Q ss_pred CCCCCCCCCCCCCCCCC
Q 003191 504 EPQVGPPPPVPPPQGSP 520 (840)
Q Consensus 504 ~~~~~~~p~~~~~~~~~ 520 (840)
|.|..|+|++++++..|
T Consensus 1939 e~~sqpqp~p~~~~p~p 1955 (1958)
T KOG0391|consen 1939 ELQSQPQPQPQAPQPAP 1955 (1958)
T ss_pred cccCCCCCCCCCCCCCC
Confidence 33433444444444443
No 110
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=62.08 E-value=37 Score=38.29 Aligned_cols=20 Identities=5% Similarity=-0.350 Sum_probs=8.2
Q ss_pred HHHHHHHhhceeeeccceee
Q 003191 708 GLLFLACMVGGVLIFGGTVI 727 (840)
Q Consensus 708 ~~~~~~~~~~~~~~~~g~v~ 727 (840)
.|+.-+--|+.+.+.-++-+
T Consensus 416 vLissL~dcLhgiesksys~ 435 (498)
T KOG4849|consen 416 VLISSLEDCLHGIESKSYSL 435 (498)
T ss_pred HHHHHHHHHHhhhhcccccc
Confidence 33333444444444444444
No 111
>PRK09752 adhesin; Provisional
Probab=59.82 E-value=9.4 Score=49.09 Aligned_cols=8 Identities=25% Similarity=0.086 Sum_probs=3.4
Q ss_pred eeeeccCc
Q 003191 538 TASVEGPY 545 (840)
Q Consensus 538 ~V~VeGPY 545 (840)
.+.++|-.
T Consensus 988 W~R~~GGh 995 (1250)
T PRK09752 988 NLRVIGGD 995 (1250)
T ss_pred EEEeecCc
Confidence 34444443
No 112
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.27 E-value=20 Score=40.53 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=3.5
Q ss_pred eccCcC
Q 003191 541 VEGPYG 546 (840)
Q Consensus 541 VeGPYG 546 (840)
.-||+|
T Consensus 482 ~Ag~~g 487 (488)
T KOG3895|consen 482 FAGFFG 487 (488)
T ss_pred ccCCCC
Confidence 456665
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=57.22 E-value=53 Score=40.72 Aligned_cols=12 Identities=58% Similarity=1.304 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCC
Q 003191 401 PPEGHPPPVHPP 412 (840)
Q Consensus 401 ~~~~~~~~~~~~ 412 (840)
+.+.|++||-..
T Consensus 573 ~~~~~Ppp~g~~ 584 (894)
T KOG0132|consen 573 PPDPAPPPVGRP 584 (894)
T ss_pred CCCCCCCCCCCC
Confidence 455666665554
No 114
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=57.10 E-value=82 Score=39.00 Aligned_cols=11 Identities=45% Similarity=0.902 Sum_probs=5.7
Q ss_pred ccCCCCCCCCC
Q 003191 501 SETEPQVGPPP 511 (840)
Q Consensus 501 ~~~~~~~~~~p 511 (840)
+.+.+|.+|||
T Consensus 1026 ~~s~~q~~pP~ 1036 (1106)
T KOG0162|consen 1026 KPSGPQRPPPP 1036 (1106)
T ss_pred CCCCCCCCCCC
Confidence 34455555555
No 115
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=56.89 E-value=1.5e+02 Score=32.58 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=35.1
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHH
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDIL 578 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll 578 (840)
++.|-||=|...++ ..++..+||+==+++..+..+|+++-
T Consensus 127 ~l~i~GP~g~~~p~-~~~~~~lLigDetAlPAIa~iLE~lp 166 (265)
T COG2375 127 TLTIMGPRGSLVPP-EAADWYLLIGDETALPAIARILETLP 166 (265)
T ss_pred EEEEeCCCCCCCCC-CCcceEEEeccccchHHHHHHHHhCC
Confidence 68899999997665 68999999999999999999998874
No 116
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=55.69 E-value=66 Score=37.18 Aligned_cols=16 Identities=63% Similarity=1.312 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 003191 472 PPPQGPPPPLPPPKGN 487 (840)
Q Consensus 472 ~~~~~~~~~~~~~~~~ 487 (840)
||+.+|+||.||..|+
T Consensus 343 Pppp~p~p~~PP~p~~ 358 (487)
T KOG4672|consen 343 PPPPPPPPMRPPHPGN 358 (487)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 3344444444444433
No 117
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=53.25 E-value=62 Score=30.92 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=39.5
Q ss_pred EEEEEEEecCceEEEEEeCCCC--cc-cCCCcEEEEEEcCCCC---------------------CceeceEeeeCCCCCC
Q 003191 307 DVLSASCLPCGTVELVLSKPAN--LR-YNALSFFFLQVRELSW---------------------LQWHPFSVSSSPLEGK 362 (840)
Q Consensus 307 ~vasv~~Lp~~vvrLtI~~p~~--~~-~~PGQhvfL~vP~is~---------------------~q~HPFTIaSsp~~~~ 362 (840)
++++++.+..+.+||++..+.- +. ..+|||+.|.+|.-.. ...+-||+.+...+ .
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~-~ 79 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPE-T 79 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCC-C
Confidence 4678889999999999997642 22 4699999999983321 13578999877543 4
Q ss_pred CeEEEEEEecCc
Q 003191 363 YHSSVLIKVLGE 374 (840)
Q Consensus 363 ~~Lsf~IK~~Gg 374 (840)
++|.+-+-..|+
T Consensus 80 ~~l~iDfv~Hg~ 91 (117)
T PF08021_consen 80 GELDIDFVLHGD 91 (117)
T ss_dssp -EEEEEEE--SS
T ss_pred CEEEEEEEECCC
Confidence 677776655553
No 118
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=52.51 E-value=34 Score=36.12 Aligned_cols=9 Identities=33% Similarity=0.700 Sum_probs=3.7
Q ss_pred CCCCCCCCC
Q 003191 445 PPPQGAPPP 453 (840)
Q Consensus 445 ~~~~~~~~~ 453 (840)
+.||+.++-
T Consensus 148 sS~q~~~~~ 156 (205)
T PF12238_consen 148 SSPQGTSTT 156 (205)
T ss_pred CCCCCCCCC
Confidence 334444433
No 119
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=51.96 E-value=12 Score=47.62 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=4.8
Q ss_pred ChhhHHHHHHHH
Q 003191 806 PPSLQSSVAKEI 817 (840)
Q Consensus 806 P~~M~~~Va~~c 817 (840)
|.+-++-+++.+
T Consensus 474 ~vsyqkLLknyv 485 (2365)
T COG5178 474 PVSYQKLLKNYV 485 (2365)
T ss_pred chhHHHHHHHHH
Confidence 333444444433
No 120
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.80 E-value=78 Score=39.90 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=7.7
Q ss_pred hhceeeeccceeee
Q 003191 715 MVGGVLIFGGTVIG 728 (840)
Q Consensus 715 ~~~~~~~~~g~v~~ 728 (840)
+-+|++.|-..+-+
T Consensus 457 ~~Vgivtfd~tvhF 470 (1007)
T KOG1984|consen 457 IRVGIVTFDKTVHF 470 (1007)
T ss_pred eEEEEEEecceeEe
Confidence 44566666555543
No 121
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.22 E-value=46 Score=37.62 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=4.5
Q ss_pred CceeceE
Q 003191 347 LQWHPFS 353 (840)
Q Consensus 347 ~q~HPFT 353 (840)
++.||+-
T Consensus 77 ldtyP~~ 83 (365)
T KOG2391|consen 77 LDTYPYY 83 (365)
T ss_pred cccCCCC
Confidence 5667763
No 122
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.48 E-value=78 Score=38.49 Aligned_cols=10 Identities=30% Similarity=0.149 Sum_probs=4.2
Q ss_pred HHHHHHHhhh
Q 003191 290 LFILDRFLRF 299 (840)
Q Consensus 290 lw~lDRllR~ 299 (840)
++.+-+.+|.
T Consensus 283 l~~L~~~lR~ 292 (585)
T PRK14950 283 TRDLVEYLRQ 292 (585)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 123
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=44.16 E-value=26 Score=37.80 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=20.9
Q ss_pred eEEEEEeCChhhHHHHHHHHHhcc
Q 003191 798 DVGVIVCGPPSLQSSVAKEIRSHS 821 (840)
Q Consensus 798 ~VGV~vCGP~~M~~~Va~~c~s~~ 821 (840)
+-.|++|||++|++++++..++..
T Consensus 190 ~~~v~lCGp~~mv~~~~~~L~~~G 213 (261)
T TIGR02911 190 EVQAIVVGPPIMMKFTVQELLKKG 213 (261)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcC
Confidence 357999999999999999998853
No 124
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=44.06 E-value=21 Score=39.46 Aligned_cols=22 Identities=27% Similarity=0.723 Sum_probs=17.6
Q ss_pred eEEEEEeCChhhHH-HHHHHHHh
Q 003191 798 DVGVIVCGPPSLQS-SVAKEIRS 819 (840)
Q Consensus 798 ~VGV~vCGP~~M~~-~Va~~c~s 819 (840)
+-.|++|||++|++ ++.+..++
T Consensus 267 ~~~vyiCGp~~mv~~~~~~~L~~ 289 (300)
T PTZ00319 267 KVMALMCGPPPMLQMAVKPNLEK 289 (300)
T ss_pred CeEEEEECCHHHHHHHHHHHHHH
Confidence 45799999999998 56666665
No 125
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=42.51 E-value=77 Score=37.96 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=16.5
Q ss_pred eeeeccCcCCCCcCccCCceE-EEEEcCCCc
Q 003191 538 TASVEGPYGHEVPYHLMYENL-ILVAGGIGI 567 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~v-VLIAGGsGI 567 (840)
...|||=|-..+++. ++..| .|++|=-|+
T Consensus 291 a~AIeGVfP~~tpd~-RcRvvNALl~g~~GL 320 (582)
T PF03276_consen 291 APAIEGVFPTTTPDL-RCRVVNALLGGHLGL 320 (582)
T ss_pred chhhcccccCCCccH-HHHHHHHHhcCCCcc
Confidence 356899888777763 44432 234444443
No 126
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=40.89 E-value=59 Score=35.52 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=9.1
Q ss_pred hchhhhhhccchhH
Q 003191 245 TSFHPVRKHFFQLF 258 (840)
Q Consensus 245 tSl~~iRr~~YElF 258 (840)
.++..-.|-+||++
T Consensus 25 LPL~pcpR~~Fql~ 38 (253)
T PF05308_consen 25 LPLKPCPRPHFQLI 38 (253)
T ss_pred CCCCCCCCceeecc
Confidence 34555677777776
No 127
>PLN02252 nitrate reductase [NADPH]
Probab=39.75 E-value=33 Score=43.75 Aligned_cols=40 Identities=13% Similarity=0.293 Sum_probs=25.6
Q ss_pred CCCCHHHHHHhhcccCCCceEEEEEeCChhhHHH-HHHHHHhc
Q 003191 779 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSS-VAKEIRSH 820 (840)
Q Consensus 779 gRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~-Va~~c~s~ 820 (840)
||-+ +++++++.... ..+..|++|||++|.+. +...+.+.
T Consensus 838 GrV~-~~ll~~~l~~~-~~~~~vyiCGPp~Mi~~av~~~L~~~ 878 (888)
T PLN02252 838 GRVT-EAMLREHLPEG-GDETLALMCGPPPMIEFACQPNLEKM 878 (888)
T ss_pred CcCC-HHHHHHhcccC-CCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 4444 33555554322 23457999999999985 77777763
No 128
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=38.86 E-value=64 Score=37.57 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 003191 408 PVHPPQGP 415 (840)
Q Consensus 408 ~~~~~~~~ 415 (840)
+|+..++.
T Consensus 115 ~~~n~~s~ 122 (409)
T KOG4590|consen 115 PVTNGPSQ 122 (409)
T ss_pred CCCCCCCc
Confidence 33333333
No 129
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=38.67 E-value=1.6e+02 Score=34.46 Aligned_cols=8 Identities=25% Similarity=0.094 Sum_probs=3.2
Q ss_pred CceEEEEE
Q 003191 316 CGTVELVL 323 (840)
Q Consensus 316 ~~vvrLtI 323 (840)
+++.++..
T Consensus 31 ~n~frVvg 38 (409)
T KOG4590|consen 31 GNTFRVVG 38 (409)
T ss_pred CCceeEEe
Confidence 34444433
No 130
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=38.09 E-value=52 Score=30.50 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHhch-----hhhhhccchhHHHhhhhHH-HHHHHhhhccc
Q 003191 231 PGVISLLAGLMMWATSF-----HPVRKHFFQLFFYTHQLYV-VFVVFLALHVG 277 (840)
Q Consensus 231 ~GvvAlv~l~lL~vtSl-----~~iRr~~YElF~~~H~L~i-vflv~l~~H~~ 277 (840)
.|.+|++.+.+..+.+. ...++..+|.+...|..+. +.+++...|..
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778777777776652 2345678999999999986 77788888973
No 131
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=37.42 E-value=1.2e+02 Score=36.13 Aligned_cols=6 Identities=17% Similarity=-0.152 Sum_probs=2.9
Q ss_pred hhhHHH
Q 003191 189 YGWDIL 194 (840)
Q Consensus 189 Rnn~L~ 194 (840)
|+|-+-
T Consensus 162 RG~TqK 167 (554)
T KOG0119|consen 162 RGNTQK 167 (554)
T ss_pred CccHHH
Confidence 555443
No 132
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=35.46 E-value=80 Score=36.09 Aligned_cols=9 Identities=0% Similarity=-0.496 Sum_probs=4.8
Q ss_pred ccCCCcEEE
Q 003191 330 RYNALSFFF 338 (840)
Q Consensus 330 ~~~PGQhvf 338 (840)
.-++|.++-
T Consensus 93 lK~~Gd~v~ 101 (457)
T KOG0559|consen 93 LKKVGDRVN 101 (457)
T ss_pred hhCcccccc
Confidence 345666643
No 133
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=35.19 E-value=36 Score=30.51 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhheeeeCCCCCcchhHHHHHHHHHhhceeeeccceeee
Q 003191 679 SSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIG 728 (840)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 728 (840)
.+..|+.++=--+-.+...|+ .++|.+.++-++++++|+..+||.+..
T Consensus 16 ~a~yGiklMRD~~F~~~~~p~--~~lwlqfl~G~~lf~~G~~Fi~GfI~~ 63 (77)
T PF11118_consen 16 LAAYGIKLMRDTVFGILFSPF--PSLWLQFLAGLLLFAIGVGFIAGFILH 63 (77)
T ss_pred HHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHhHhhe
Confidence 344455544333333444565 478999999999999999999999985
No 134
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=32.80 E-value=2.3e+02 Score=31.40 Aligned_cols=8 Identities=25% Similarity=0.248 Sum_probs=3.5
Q ss_pred eccCcCCC
Q 003191 541 VEGPYGHE 548 (840)
Q Consensus 541 VeGPYG~~ 548 (840)
|+=.-|++
T Consensus 112 vdn~~gGF 119 (297)
T PF07174_consen 112 VDNAAGGF 119 (297)
T ss_pred ccccccce
Confidence 34444444
No 135
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=29.06 E-value=93 Score=37.30 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=6.2
Q ss_pred cchhhhhhcC
Q 003191 489 MYENLIVVAG 498 (840)
Q Consensus 489 ~~~~~~~~~~ 498 (840)
.|+++|+++.
T Consensus 329 d~d~vi~~p~ 338 (574)
T PF07462_consen 329 DYDKVIALPL 338 (574)
T ss_pred cccceeeccC
Confidence 3666766654
No 136
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.48 E-value=3.5e+02 Score=35.18 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=7.2
Q ss_pred hHHHHHHHHHhh
Q 003191 570 FLAILSDILHRI 581 (840)
Q Consensus 570 ~lsiL~~Ll~~~ 581 (840)
+..++++++++.
T Consensus 951 i~~~~e~~~~r~ 962 (1049)
T KOG0307|consen 951 IETFLEELLQRC 962 (1049)
T ss_pred HHHHHHHHHHHh
Confidence 455666666654
No 137
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.83 E-value=3.4e+02 Score=33.58 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=12.2
Q ss_pred CCCCHHHHHHhhcccCCCceEEEEEeCChh
Q 003191 779 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPS 808 (840)
Q Consensus 779 gRPdl~~I~~~~~~~~~~~~VGV~vCGP~~ 808 (840)
.+|..+.+.+++. --++.|+|..
T Consensus 586 ~~~~~~~~~~~~~-------~~~~~~~~~~ 608 (624)
T PRK14959 586 AHPAVQLLKEEMG-------ACILKCTPLA 608 (624)
T ss_pred hChHHHHHHHHhC-------CeeEeecchh
Confidence 4555555555442 2456666654
No 138
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=23.26 E-value=2e+02 Score=37.90 Aligned_cols=7 Identities=57% Similarity=0.952 Sum_probs=3.1
Q ss_pred ccccceE
Q 003191 119 LWTFPVL 125 (840)
Q Consensus 119 ~~~~~~l 125 (840)
+..||-+
T Consensus 1246 ~lqFPel 1252 (1958)
T KOG0391|consen 1246 LLQFPEL 1252 (1958)
T ss_pred hhcCcch
Confidence 3444444
No 139
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=22.41 E-value=1.3e+02 Score=25.38 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=22.1
Q ss_pred hhhccchhHHHhhhhHH-HHHHHhhhccc
Q 003191 250 VRKHFFQLFFYTHQLYV-VFVVFLALHVG 277 (840)
Q Consensus 250 iRr~~YElF~~~H~L~i-vflv~l~~H~~ 277 (840)
+.......+..+|.... .++++..+|..
T Consensus 33 ~~~~~~~~~~~iH~~~g~~~~~l~~~Hl~ 61 (64)
T PF14358_consen 33 FLGLNKHFWRNIHLWAGYLFLILIILHLG 61 (64)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678999999986 88899999975
No 140
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=21.51 E-value=1.6e+02 Score=34.17 Aligned_cols=53 Identities=32% Similarity=0.538 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 434 ANPHVGPPLPVPPPQGAPPPGPPLQE--------------------------EGPPPQGPHPPVPPPQGPPPPLPPPKG 486 (840)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (840)
+..+-.+++++--||..+||.||-.- .+-|++.|.+|.--|.+|||+.||+.+
T Consensus 467 a~~~~p~~p~~~~~pls~PPlPPr~dl~~~~l~~~~~s~~~~~~k~l~~v~~~g~~lp~~~~~qr~PpppaP~rpp~~~ 545 (563)
T KOG1785|consen 467 AHDASPSIPSVDEPPLSLPPLPPRLDLTLDTLNSSQTSSSGVNIKELENVETSGKPLPAPPNPQRDPPPPAPPRPPRLS 545 (563)
T ss_pred hhhccCCCCccccCCCCCCCCCCCccccccccCCCCCCCCCcchhhhhcccccCCCCCCCCCcccCCCCCCCCCCCCCC
No 141
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=21.24 E-value=1.5e+02 Score=32.41 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=7.6
Q ss_pred CCchhhHHHHHHH
Q 003191 565 IGISPFLAILSDI 577 (840)
Q Consensus 565 sGITP~lsiL~~L 577 (840)
.++.=|+-+|+|+
T Consensus 235 ~~~PnMldVLKDm 247 (253)
T PF05308_consen 235 PDVPNMLDVLKDM 247 (253)
T ss_pred cCCccHHHHHHhh
Confidence 3455566666665
No 142
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=21.21 E-value=3.6e+02 Score=33.58 Aligned_cols=9 Identities=0% Similarity=-0.532 Sum_probs=3.9
Q ss_pred CCcEEEEEE
Q 003191 333 ALSFFFLQV 341 (840)
Q Consensus 333 PGQhvfL~v 341 (840)
+||--..+.
T Consensus 114 ~g~~~~~n~ 122 (944)
T KOG4307|consen 114 PGQEQNWNS 122 (944)
T ss_pred ccccccccc
Confidence 454444443
No 143
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.99 E-value=1e+02 Score=36.10 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=3.9
Q ss_pred chhHHHHH
Q 003191 374 EWTENLRD 381 (840)
Q Consensus 374 g~TkkL~~ 381 (840)
.|+|++.+
T Consensus 187 eWvKa~l~ 194 (480)
T KOG2675|consen 187 EWVKAYLA 194 (480)
T ss_pred HHHHHHHH
Confidence 45554433
No 144
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=20.90 E-value=75 Score=41.92 Aligned_cols=23 Identities=35% Similarity=0.748 Sum_probs=20.6
Q ss_pred eEEEEEeCChhhHHHHHHHHHhc
Q 003191 798 DVGVIVCGPPSLQSSVAKEIRSH 820 (840)
Q Consensus 798 ~VGV~vCGP~~M~~~Va~~c~s~ 820 (840)
+..|++|||+.|++++++.+...
T Consensus 1129 ~~~vyiCGP~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1129 DLLVAICGPPVMQRAVKADLLAL 1151 (1167)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc
Confidence 46799999999999999999874
No 145
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.81 E-value=88 Score=36.56 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=3.8
Q ss_pred HHHHHhh
Q 003191 379 LRDYILS 385 (840)
Q Consensus 379 L~~~l~~ 385 (840)
|.+++++
T Consensus 199 L~~YVk~ 205 (480)
T KOG2675|consen 199 LQAYVKE 205 (480)
T ss_pred HHHHHHH
Confidence 5555544
No 146
>COG2245 Predicted membrane protein [Function unknown]
Probab=20.22 E-value=1.5e+02 Score=30.58 Aligned_cols=59 Identities=22% Similarity=0.403 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhcccc--cchhhhHhhhhcccceEecccchhhHHHHHHHHHHHHHHHHHHH
Q 003191 39 WVIFVAWVALIFLYPSE--FGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLI 99 (840)
Q Consensus 39 ~~~~~~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 99 (840)
-...+||+.+|+++=-. |+|+=...++..|.---|+..| ++.|++.++++-++|.+-+-
T Consensus 100 ~~~Lag~Vi~wIl~Iisayf~kkaleala~~tgv~~F~~ag--l~Y~iGaiLlIV~vG~iIi~ 160 (182)
T COG2245 100 GSFLAGFVILWILYIISAYFQKKALEALAQYTGVDLFRTAG--LLYFIGAILLIVAVGLIIIL 160 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHhhhh--HHHHHHHHHHHHHHHHHHHH
Confidence 34566899999887666 6677888888877655676655 45666766666555554433
Done!