Query 003191
Match_columns 840
No_of_seqs 517 out of 2492
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eh1_A Flavohemoprotein; struc 99.9 9.1E-25 3.1E-29 226.1 19.7 167 303-635 3-181 (243)
2 1qfj_A Protein (flavin reducta 99.9 4.7E-24 1.6E-28 219.6 20.7 166 305-635 4-171 (232)
3 1tvc_A Methane monooxygenase c 99.9 4.7E-24 1.6E-28 222.5 18.1 167 304-634 11-185 (250)
4 4fk8_A Ferredoxin--NADP reduct 99.9 5.5E-24 1.9E-28 224.5 16.4 152 303-614 19-174 (271)
5 3lo8_A Ferredoxin--NADP reduct 99.9 2E-23 6.9E-28 224.9 19.7 176 304-635 29-235 (311)
6 3vo2_A Putative uncharacterize 99.9 3.9E-23 1.3E-27 223.1 21.3 176 305-636 35-234 (310)
7 2eix_A NADH-cytochrome B5 redu 99.9 1.3E-22 4.5E-27 210.2 22.1 170 304-635 12-186 (243)
8 2r6h_A NADH:ubiquinone oxidore 99.9 1.1E-22 3.8E-27 216.1 21.8 87 538-635 140-226 (290)
9 3jqq_A Ferredoxin NADP reducta 99.9 2.9E-23 9.8E-28 225.3 15.9 94 538-635 150-250 (316)
10 4g1v_A Flavohemoglobin; three 99.9 3.6E-22 1.2E-26 222.6 24.3 169 302-633 148-339 (399)
11 1fdr_A Flavodoxin reductase; f 99.9 1.5E-22 5.1E-27 210.4 19.6 168 304-635 5-176 (248)
12 1krh_A Benzoate 1,2-dioxygenas 99.9 1.8E-22 6.1E-27 219.9 20.4 166 304-635 109-279 (338)
13 3a1f_A Cytochrome B-245 heavy 99.9 3.1E-23 1.1E-27 205.0 13.0 183 539-838 1-186 (186)
14 2qdx_A Ferredoxin reductase; o 99.9 9.1E-22 3.1E-26 206.0 18.7 171 304-634 4-182 (257)
15 2pia_A Phthalate dioxygenase r 99.9 4.8E-21 1.6E-25 207.9 24.4 148 304-614 9-162 (321)
16 1cqx_A Flavohemoprotein; globi 99.9 3.2E-21 1.1E-25 214.9 23.5 169 303-635 154-334 (403)
17 1umk_A B5R, NADH-cytochrome B5 99.9 1.4E-21 4.6E-26 206.4 19.3 76 304-380 17-106 (275)
18 1gvh_A Flavohemoprotein; oxido 99.9 1.1E-21 3.9E-26 218.0 19.5 170 303-635 152-328 (396)
19 2bgi_A Ferredoxin-NADP(H) redu 99.9 2.3E-21 7.8E-26 205.2 20.8 170 305-634 18-196 (272)
20 1fnb_A Ferredoxin-NADP+ reduct 99.9 5.9E-21 2E-25 206.1 22.2 175 305-635 39-237 (314)
21 2bmw_A Ferredoxin--NADP reduct 99.9 5.6E-21 1.9E-25 205.0 21.1 176 305-635 23-227 (304)
22 2b5o_A FNR, ferredoxin--NADP r 99.9 1.1E-20 3.8E-25 211.7 21.2 176 304-635 123-325 (402)
23 1ep3_B Dihydroorotate dehydrog 99.8 5.4E-20 1.8E-24 193.6 20.1 149 305-614 7-160 (262)
24 2rc5_A Ferredoxin-NADP reducta 99.8 1.1E-19 3.6E-24 196.1 19.7 90 538-635 146-237 (314)
25 2cnd_A NADH-dependent nitrate 99.8 5.5E-20 1.9E-24 193.4 17.0 207 304-670 13-247 (270)
26 2gpj_A Siderophore-interacting 99.6 1.6E-14 5.3E-19 151.6 20.1 74 304-380 9-89 (252)
27 1ddg_A Sulfite reductase (NADP 99.5 1E-14 3.5E-19 162.1 10.8 87 538-635 209-297 (374)
28 4dql_A Bifunctional P-450/NADP 99.5 5E-14 1.7E-18 157.6 14.7 93 535-635 220-313 (393)
29 1f20_A Nitric-oxide synthase; 99.4 1.2E-12 4.2E-17 148.1 13.6 92 538-635 261-354 (435)
30 3lyu_A Putative hydrogenase; t 99.3 1.8E-12 6.3E-17 125.0 9.7 64 539-613 3-66 (142)
31 2qtl_A MSR;, methionine syntha 99.3 2.2E-11 7.7E-16 141.3 18.2 95 537-636 359-455 (539)
32 1tll_A Nitric-oxide synthase, 99.3 7.4E-12 2.5E-16 149.2 14.2 92 538-635 482-575 (688)
33 2bpo_A CPR, P450R, NADPH-cytoc 99.3 2.4E-12 8.3E-17 153.3 8.6 94 538-635 493-604 (682)
34 3lrx_A Putative hydrogenase; a 99.3 2.7E-12 9.4E-17 125.9 5.6 66 538-614 6-72 (158)
35 3qfs_A CPR, P450R, NADPH--cyto 99.2 1.9E-11 6.3E-16 139.3 11.9 91 538-635 289-380 (458)
36 3qe2_A CPR, P450R, NADPH--cyto 99.2 4.5E-11 1.5E-15 140.9 11.6 91 538-635 449-540 (618)
37 2cnd_A NADH-dependent nitrate 45.8 7.3 0.00025 39.9 1.7 40 779-820 219-259 (270)
38 1nxk_A MAP kinase-activated pr 30.6 12 0.00041 40.8 0.5 15 775-789 308-322 (400)
39 1nxk_A MAP kinase-activated pr 25.6 15 0.00052 39.9 0.2 10 539-548 69-78 (400)
40 3s2u_A UDP-N-acetylglucosamine 24.4 49 0.0017 35.5 3.9 25 556-580 3-29 (365)
No 1
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.92 E-value=9.1e-25 Score=226.14 Aligned_cols=167 Identities=16% Similarity=0.215 Sum_probs=132.1
Q ss_pred ccceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCC--CCceeceEeeeCCCCCCCeEEEEEEec-----
Q 003191 303 RRTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL----- 372 (840)
Q Consensus 303 ~~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is--~~q~HPFTIaSsp~~~~~~Lsf~IK~~----- 372 (840)
++.+++.+++.+++++.++++..+. ...++||||++|+++..+ ..++|||||+|.+++ +.++|+||..
T Consensus 3 ~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~~~i~vk~~~~~~~ 80 (243)
T 4eh1_A 3 GRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASNG--REYRISVKREGVGSD 80 (243)
T ss_dssp CEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCS--SCEEEEEECTTTTSS
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEecCCCccccceeeEeccCCCC--CeEEEEEEEeecCCC
Confidence 3467889999999999999998654 367999999999998543 337899999998853 7899999999
Q ss_pred --CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCC
Q 003191 373 --GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 450 (840)
Q Consensus 373 --Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (840)
|.+|+.|++.+..
T Consensus 81 ~~G~~S~~l~~~l~~----------------------------------------------------------------- 95 (243)
T 4eh1_A 81 NPGLVSHYLHNNVKV----------------------------------------------------------------- 95 (243)
T ss_dssp SCCHHHHHHHHHCCT-----------------------------------------------------------------
T ss_pred CCCeehhHHHhcCCC-----------------------------------------------------------------
Confidence 8899999765311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 451 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 530 (840)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 530 (840)
T Consensus 96 -------------------------------------------------------------------------------- 95 (243)
T 4eh1_A 96 -------------------------------------------------------------------------------- 95 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHH
Q 003191 531 LLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 610 (840)
Q Consensus 531 ~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~ 610 (840)
|+ ++.|+||||.+... ..+++++|||||+||||++++++++..+. ..+ ++|+|++|+.+++.+.++
T Consensus 96 ---G~--~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~------~~~-v~l~~~~r~~~~~~~~~e- 161 (243)
T 4eh1_A 96 ---GD--SVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQN------KSG-VTYLYACNSAKEHTFAQE- 161 (243)
T ss_dssp ---TC--EEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTT------CCS-EEEEEEESSGGGCTTHHH-
T ss_pred ---CC--EEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcC------CCe-EEEEEEeCChhhhhHHHH-
Confidence 12 58899999998765 67899999999999999999999998753 123 999999999999865544
Q ss_pred HHHccCCCCCCCCceEEEEEEeCCC
Q 003191 611 YKESICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 611 l~el~~~~~~~~~~l~I~iyVTr~~ 635 (840)
++++. .+. +++++++++++.
T Consensus 162 l~~l~----~~~-~~~~~~~~s~~~ 181 (243)
T 4eh1_A 162 TAQLI----AQQ-GWMQQVWYRDES 181 (243)
T ss_dssp HHHHH----HHH-TCEEEEEESSCC
T ss_pred HHHHH----HhC-CeEEEEEEccCC
Confidence 44443 122 678888887654
No 2
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.92 E-value=4.7e-24 Score=219.59 Aligned_cols=166 Identities=22% Similarity=0.256 Sum_probs=128.5
Q ss_pred ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY 382 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~ 382 (840)
.+++.+++.+++++.++++..+..+.++||||++|+++. .++|||||+|.+.+ ++.++|.||.. |++|+++.+.
T Consensus 4 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~---~~~R~ySi~s~~~~-~~~l~l~i~~~~~G~~s~~~~~~ 79 (232)
T 1qfj_A 4 SCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDE---RDKRPFSMASTPDE-KGFIELHIGASEINLYAKAVMDR 79 (232)
T ss_dssp EEEEEEEEESSSSCEEEEEEESSCCCCCTTCEEEEESSS---SCEEEEECCSCTTS-TTCEEEEEC------CCHHHHHH
T ss_pred EEEEEEEEecCCCEEEEEEecCCCCCcCCCCEEEEECCC---CceeeeecCCCCCC-CCcEEEEEEEccCCchhHHHHHh
Confidence 467888899999999999987767789999999999985 58899999999864 57899999997 4578877665
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 462 (840)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (840)
+...
T Consensus 80 l~~G---------------------------------------------------------------------------- 83 (232)
T 1qfj_A 80 ILKD---------------------------------------------------------------------------- 83 (232)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 5321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec
Q 003191 463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 542 (840)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve 542 (840)
+ ++.|+
T Consensus 84 ------------------------------------------------------------------------d--~v~v~ 89 (232)
T 1qfj_A 84 ------------------------------------------------------------------------H--QIVVD 89 (232)
T ss_dssp ------------------------------------------------------------------------S--EEEEE
T ss_pred ------------------------------------------------------------------------C--EEEEe
Confidence 2 57789
Q ss_pred cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191 543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 622 (840)
Q Consensus 543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~ 622 (840)
||||.+......+++++|||||+||||++++++++..+. ..++++|+|++|+.+++.+. ++++++. .+.
T Consensus 90 gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~-~el~~l~----~~~ 158 (232)
T 1qfj_A 90 IPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN------PNRDITIYWGGREEQHLYDL-CELEALS----LKH 158 (232)
T ss_dssp EEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC------TTCCEEEEEEESSGGGCTTH-HHHHHHH----HHC
T ss_pred CCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC------CCCcEEEEEeeCCHHHhhhH-HHHHHHH----HHC
Confidence 999998654345899999999999999999999998753 13579999999999998544 4445543 122
Q ss_pred CceEEEEEEeCCC
Q 003191 623 LNLETFIYVTRET 635 (840)
Q Consensus 623 ~~l~I~iyVTr~~ 635 (840)
.+++++.++++++
T Consensus 159 ~~~~~~~~~s~~~ 171 (232)
T 1qfj_A 159 PGLQVVPVVEQPE 171 (232)
T ss_dssp TTEEEEEEESSCC
T ss_pred CCeEEEEEEcCCC
Confidence 4688888887654
No 3
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.91 E-value=4.7e-24 Score=222.48 Aligned_cols=167 Identities=22% Similarity=0.286 Sum_probs=130.9
Q ss_pred cceEEEEEEEecCceEEEEEeC-C-C----CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--Cch
Q 003191 304 RTVDVLSASCLPCGTVELVLSK-P-A----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW 375 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~-p-~----~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~ 375 (840)
..+++.+++.+.+++.++++.. + . .+.++||||++|++|. ..++|||||+|.+.+ ++.++|+||.. |.+
T Consensus 11 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~~-~~~l~i~vk~~~~G~~ 87 (250)
T 1tvc_A 11 FEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG--TDVSRSYSPANLPNP-EGRLEFLIRVLPEGRF 87 (250)
T ss_dssp EEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS--CSSSEEECCBCCSSS-SCCEEEEECCCTTSSS
T ss_pred EEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeCC--CccccccccCCCCCC-CCeEEEEEEECCCCCc
Confidence 3556777888899999999987 6 4 5789999999999975 358899999999864 57899999998 899
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003191 376 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455 (840)
Q Consensus 376 TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (840)
|+.|++.+..
T Consensus 88 s~~l~~~l~~---------------------------------------------------------------------- 97 (250)
T 1tvc_A 88 SDYLRNDARV---------------------------------------------------------------------- 97 (250)
T ss_dssp HHHHHHHSSS----------------------------------------------------------------------
T ss_pred hHHHHhcCCC----------------------------------------------------------------------
Confidence 9999754311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT 535 (840)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~ 535 (840)
|+
T Consensus 98 ------------------------------------------------------------------------------Gd 99 (250)
T 1tvc_A 98 ------------------------------------------------------------------------------GQ 99 (250)
T ss_dssp ------------------------------------------------------------------------------SS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 12
Q ss_pred ceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc
Q 003191 536 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 615 (840)
Q Consensus 536 ~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~ 615 (840)
++.|+||||.+......+++++|||||+||||++++++++..+. ..++++|+|++|+.+++. +.++++++.
T Consensus 100 --~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~-~~~el~~l~ 170 (250)
T 1tvc_A 100 --VLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT------APNETRIYFGVNTEPELF-YIDELKSLE 170 (250)
T ss_dssp --EEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT------CCSCEEEEEECSSSTTCC-CHHHHHHHH
T ss_pred --EEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC------CCceEEEEEEeCCHHHhh-hHHHHHHHH
Confidence 57899999998654345689999999999999999999998753 135799999999999984 444555542
Q ss_pred CCCCCCCCceEEEEEEeCC
Q 003191 616 CPFFSDKLNLETFIYVTRE 634 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~ 634 (840)
.+..+++++.++|++
T Consensus 171 ----~~~~~~~~~~~~s~~ 185 (250)
T 1tvc_A 171 ----RSMRNLTVKACVWHP 185 (250)
T ss_dssp ----HHSSSCEEEECCSSC
T ss_pred ----HhCCCeEEEEEeccC
Confidence 122457887777765
No 4
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.91 E-value=5.5e-24 Score=224.53 Aligned_cols=152 Identities=20% Similarity=0.262 Sum_probs=123.8
Q ss_pred ccceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191 303 RRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR 380 (840)
Q Consensus 303 ~~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~ 380 (840)
....++.+++.++++++++++..+..+.++||||++|+++..+..++|||||+|.++ ++.++|+||.. |.+|+.|.
T Consensus 19 ~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~~~~G~~s~~l~ 96 (271)
T 4fk8_A 19 FDTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIKVQNGPLTSRLQ 96 (271)
T ss_dssp EEEEEEEEEEEEETTEEEEEECCCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEECCTTCTTHHHHT
T ss_pred ceeEEEEEEEEcCCCEEEEEEEcCCCCCcCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEEECCCchhhHHh
Confidence 356788999999999999999988788999999999999976677899999999885 36899999998 88998773
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 381 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 460 (840)
Q Consensus 381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (840)
+ + +
T Consensus 97 ~-l--~-------------------------------------------------------------------------- 99 (271)
T 4fk8_A 97 H-L--K-------------------------------------------------------------------------- 99 (271)
T ss_dssp T-C--C--------------------------------------------------------------------------
T ss_pred c-C--C--------------------------------------------------------------------------
Confidence 1 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeee
Q 003191 461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 540 (840)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~ 540 (840)
+|+ ++.
T Consensus 100 ------------------------------------------------------------------------~Gd--~v~ 105 (271)
T 4fk8_A 100 ------------------------------------------------------------------------VGD--PVL 105 (271)
T ss_dssp ------------------------------------------------------------------------TTC--EEE
T ss_pred ------------------------------------------------------------------------CCC--EEE
Confidence 013 588
Q ss_pred ec-cCcCCCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191 541 VE-GPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614 (840)
Q Consensus 541 Ve-GPYG~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el 614 (840)
|+ ||||.+.... ..+++++|||||+||||++++++++..+.. .++++|+|++|+.+++.+. ++++++
T Consensus 106 v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~-~el~~l 174 (271)
T 4fk8_A 106 IGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYER------FDKVVLTHTCRLKGELAYM-DYIKHD 174 (271)
T ss_dssp EESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHH------CSEEEEEECCCSHHHHHHH-HHHHTC
T ss_pred EecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCC------CCCEEEEEecCCHHHHhHH-HHHHHH
Confidence 99 9999976542 368999999999999999999999876541 3589999999999998654 444444
No 5
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=99.91 E-value=2e-23 Score=224.88 Aligned_cols=176 Identities=16% Similarity=0.150 Sum_probs=134.7
Q ss_pred cceEEEEEEEec-----CceEEEEEeCCCCcccCCCcEEEEEEcCCC------CCceeceEeeeCCCCC---CCeEEEEE
Q 003191 304 RTVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVRELS------WLQWHPFSVSSSPLEG---KYHSSVLI 369 (840)
Q Consensus 304 ~~~~vasv~~Lp-----~~vvrLtI~~p~~~~~~PGQhvfL~vP~is------~~q~HPFTIaSsp~~~---~~~Lsf~I 369 (840)
..+++++++.+. ++++++++..+..+.|+||||++|++|..+ .+++|||||+|+|.++ .+.++|+|
T Consensus 29 ~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~V 108 (311)
T 3lo8_A 29 FTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCV 108 (311)
T ss_dssp EEEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEE
T ss_pred eEEEEEeeEeccCCCCCCccEEEEEeCCCCCcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEE
Confidence 456788999998 899999999887889999999999998642 3589999999998642 47899999
Q ss_pred Eec---------------CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccC
Q 003191 370 KVL---------------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEA 434 (840)
Q Consensus 370 K~~---------------Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (840)
|.. |.+|+.|.+ +.
T Consensus 109 k~~~~~~~~~~~~~~~~~G~~S~~L~~-l~-------------------------------------------------- 137 (311)
T 3lo8_A 109 RRAVYYDPETGKEDPSKNGVCSNFLCN-SK-------------------------------------------------- 137 (311)
T ss_dssp ECCCCCCTTTCCCCGGGSCHHHHHHHT-CC--------------------------------------------------
T ss_pred EEEEecccccCcCCcCCCCchhhHHhc-CC--------------------------------------------------
Confidence 965 788888854 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCC
Q 003191 435 NPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 514 (840)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 514 (840)
T Consensus 138 -------------------------------------------------------------------------------- 137 (311)
T 3lo8_A 138 -------------------------------------------------------------------------------- 137 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCCCcCc--cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceE
Q 003191 515 PPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 592 (840)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~--~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV 592 (840)
+|+ ++.|+||||.+.... ..+++++|||||+||||+++++++++.+...+. ...+++
T Consensus 138 ------------------~Gd--~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v 196 (311)
T 3lo8_A 138 ------------------PGD--KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNY-RFGGLA 196 (311)
T ss_dssp ------------------TTC--EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTC-CCCSEE
T ss_pred ------------------CcC--EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccc-cCCCCE
Confidence 013 578899999976432 368899999999999999999999986542111 123689
Q ss_pred EEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC
Q 003191 593 LIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 593 ~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~ 635 (840)
+|+|++|+.+++.+. ++++++. .....++++++++|+++
T Consensus 197 ~l~~g~r~~~d~~~~-~el~~l~---~~~~~~~~~~~~~s~~~ 235 (311)
T 3lo8_A 197 WLFLGVANSDSLLYD-EEFTSYL---KQYPDNFRYDKALSREQ 235 (311)
T ss_dssp EEEEEESSGGGCSSH-HHHHHHH---HHCTTTEEEEEEETTTC
T ss_pred EEEEecCChHHhhHH-HHHHHHH---HhCCCcEEEEEEECCCC
Confidence 999999999988554 4444543 11223789999998864
No 6
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=99.90 E-value=3.9e-23 Score=223.11 Aligned_cols=176 Identities=20% Similarity=0.211 Sum_probs=132.9
Q ss_pred ceEEEEEEEecCc-----eEEEEEeCCCCcccCCCcEEEEEEcCCC----CCceeceEeeeCCCC---CCCeEEEEEEec
Q 003191 305 TVDVLSASCLPCG-----TVELVLSKPANLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLE---GKYHSSVLIKVL 372 (840)
Q Consensus 305 ~~~vasv~~Lp~~-----vvrLtI~~p~~~~~~PGQhvfL~vP~is----~~q~HPFTIaSsp~~---~~~~Lsf~IK~~ 372 (840)
..++.+++.+.++ +.++++..+..+.|+||||++|++|... .+++|||||+|++.. +++.++|+||..
T Consensus 35 ~~~V~~~~~l~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~ 114 (310)
T 3vo2_A 35 VGRCLSNTRITGDDAPGETWHMVFSTEGEIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 114 (310)
T ss_dssp EEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECC
T ss_pred EEEEEEEEEccCCCCCccEEEEEEeCCCCCcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEE
Confidence 4577888888776 9999999877789999999999998643 347899999999863 357899999985
Q ss_pred -----------CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCC
Q 003191 373 -----------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPP 441 (840)
Q Consensus 373 -----------Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (840)
|.+|+.|++ +..
T Consensus 115 ~~~~~~~~~~~G~~S~~L~~-l~~-------------------------------------------------------- 137 (310)
T 3vo2_A 115 VYTNDQGEIVKGVCSNFLCD-LKP-------------------------------------------------------- 137 (310)
T ss_dssp EEECTTSCEEECHHHHHHHT-CCT--------------------------------------------------------
T ss_pred EeccCCCCcCCcchhhHHhc-CCC--------------------------------------------------------
Confidence 888988864 110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCC
Q 003191 442 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPP 521 (840)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 521 (840)
T Consensus 138 -------------------------------------------------------------------------------- 137 (310)
T 3vo2_A 138 -------------------------------------------------------------------------------- 137 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCceeeeeccCcCCCCcC-ccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecC
Q 003191 522 QRPPPSRHPLLPPTKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 600 (840)
Q Consensus 522 ~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~-~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~ 600 (840)
|+ +|.|+||||.+... ...+++++|||||+||||+++++++++.+..... ...+++.|+|++|+
T Consensus 138 ------------Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v~L~~g~r~ 202 (310)
T 3vo2_A 138 ------------GA--DVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDY-KFSGLAWLFLGVPT 202 (310)
T ss_dssp ------------TC--EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTC-CCCSEEEEEEEESS
T ss_pred ------------CC--EEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccc-cCCCcEEEEEEecC
Confidence 12 57789999986542 2467899999999999999999999986532211 12468999999999
Q ss_pred cchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCCC
Q 003191 601 SNELSLLSNFYKESICPFFSDKLNLETFIYVTRETE 636 (840)
Q Consensus 601 ~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~~ 636 (840)
.+++.+. ++++++. .....++++++++|++.+
T Consensus 203 ~~d~~~~-~el~~l~---~~~~~~~~v~~~~sr~~~ 234 (310)
T 3vo2_A 203 SDSLLYK-EELEKMK---EMAPDNFRLDFAVSREQT 234 (310)
T ss_dssp GGGCCSH-HHHHHHH---HHCTTTEEEEEEETTTCB
T ss_pred hhhcccH-HHHHHHH---HhCCCCEEEEEEECCCCC
Confidence 9987544 4455543 112247899999998643
No 7
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.90 E-value=1.3e-22 Score=210.19 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=130.8
Q ss_pred cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 378 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk 378 (840)
..+++.+++.+++++.++++..+. ...++||||++|+++..+..++||||++|.+.+ ++.++|+||.. |.+|+.
T Consensus 12 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~~~~G~~S~~ 90 (243)
T 2eix_A 12 KKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKVYEKGQMSQY 90 (243)
T ss_dssp EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCTTCHHHHH
T ss_pred EEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEEcCCCCcchH
Confidence 467888999999999888887653 467999999999998555678999999999854 57999999997 788987
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 458 (840)
Q Consensus 379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (840)
|.+ + +
T Consensus 91 l~~-l--~------------------------------------------------------------------------ 95 (243)
T 2eix_A 91 IDH-L--N------------------------------------------------------------------------ 95 (243)
T ss_dssp HHT-C--C------------------------------------------------------------------------
T ss_pred hhc-C--C------------------------------------------------------------------------
Confidence 742 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191 459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 538 (840)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~ 538 (840)
+|+ +
T Consensus 96 --------------------------------------------------------------------------~Gd--~ 99 (243)
T 2eix_A 96 --------------------------------------------------------------------------PGD--F 99 (243)
T ss_dssp --------------------------------------------------------------------------TTC--E
T ss_pred --------------------------------------------------------------------------CCC--E
Confidence 013 5
Q ss_pred eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCC
Q 003191 539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF 618 (840)
Q Consensus 539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~ 618 (840)
+.|+||||.+..+...+++++|||||+||||++++++++.++.. ..++++|+|++|+.+++. +.++++++.
T Consensus 100 v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~-----~~~~v~l~~~~r~~~~~~-~~~el~~l~--- 170 (243)
T 2eix_A 100 LQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK-----EKTIINLIFANVNEDDIL-LRTELDDMA--- 170 (243)
T ss_dssp EEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT-----CCCEEEEEEEEEEGGGCT-THHHHHHHH---
T ss_pred EEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC-----CCcEEEEEEEcCCHHHhh-HHHHHHHHH---
Confidence 78999999975443457899999999999999999999986421 235899999999999984 445555543
Q ss_pred CCCCCceEEEEEEeCCC
Q 003191 619 FSDKLNLETFIYVTRET 635 (840)
Q Consensus 619 ~~~~~~l~I~iyVTr~~ 635 (840)
.+..+++++..+++++
T Consensus 171 -~~~~~~~~~~~~s~~~ 186 (243)
T 2eix_A 171 -KKYSNFKVYYVLNNPP 186 (243)
T ss_dssp -HHCTTEEEEEEEEECC
T ss_pred -HHCCCeEEEEEeCCCC
Confidence 1123688888887753
No 8
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.90 E-value=1.1e-22 Score=216.10 Aligned_cols=87 Identities=18% Similarity=0.337 Sum_probs=66.9
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~ 617 (840)
++.|+||||.+... ...++++|||||+||||+++++++++++.. ..++++|+|++|+.+++. +.++++++.
T Consensus 140 ~v~v~gP~G~f~~~-~~~~~~vliagGtGitP~~s~l~~~~~~~~-----~~~~v~l~~~~r~~~d~~-~~~el~~l~-- 210 (290)
T 2r6h_A 140 KVMMSGPYGDFHIQ-DTDAEMLYIGGGAGMAPLRAQILHLFRTLK-----TGRKVSYWYGARSKNEIF-YEEDFREIE-- 210 (290)
T ss_dssp EEEEEEEECCCCCC-SSSCEEEEEEEGGGHHHHHHHHHHHHHTSC-----CCSCEEEEEEESSGGGCC-SHHHHHHHH--
T ss_pred EEEEEecccCCcCC-CCCCeEEEEECccCHHHHHHHHHHHHHhcC-----CCCcEEEEEEcCCHHHHH-HHHHHHHHH--
Confidence 57889999998654 568899999999999999999999887532 135899999999999884 444455542
Q ss_pred CCCCCCceEEEEEEeCCC
Q 003191 618 FFSDKLNLETFIYVTRET 635 (840)
Q Consensus 618 ~~~~~~~l~I~iyVTr~~ 635 (840)
....+++++++++++.
T Consensus 211 --~~~~~~~~~~~~s~~~ 226 (290)
T 2r6h_A 211 --REFPNFKFHIALSDPQ 226 (290)
T ss_dssp --HHCTTEEEEEEESSCC
T ss_pred --HhCCCeEEEEEEccCC
Confidence 1224588888888753
No 9
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=99.89 E-value=2.9e-23 Score=225.32 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=69.4
Q ss_pred eeeeccCcCCCCcCcc---CCceEEEEEcCCCchhhHHHHHHHHHhhcc----CCCCCCceEEEEEeecCcchHHHHHHH
Q 003191 538 TASVEGPYGHEVPYHL---MYENLILVAGGIGISPFLAILSDILHRINE----GKSCLPRNVLIVWAVKKSNELSLLSNF 610 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~---~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~----~~~~~~~kV~LVWavR~~~dl~wl~~~ 610 (840)
+|.|+||||.+..+.. ..++++|||||+||||++|++++++.+... ......++++|+|++|+.+++ ++.++
T Consensus 150 ~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~-~~~~e 228 (316)
T 3jqq_A 150 DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSI-LYLNE 228 (316)
T ss_dssp EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGC-TTHHH
T ss_pred EEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHh-hcHHH
Confidence 5778999999754322 278999999999999999999999865321 001124689999999999998 55566
Q ss_pred HHHccCCCCCCCCceEEEEEEeCCC
Q 003191 611 YKESICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 611 l~el~~~~~~~~~~l~I~iyVTr~~ 635 (840)
++++.. ....++++++++|+++
T Consensus 229 L~~l~~---~~~~~~~~~~~~s~~~ 250 (316)
T 3jqq_A 229 LEYFQK---MYPNNINIHYVFSYKQ 250 (316)
T ss_dssp HHHHHH---HCTTTEEEEEEEGGGC
T ss_pred HHHHHH---hCCCcEEEEEEECCCc
Confidence 666531 1224689999999874
No 10
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.89 E-value=3.6e-22 Score=222.57 Aligned_cols=169 Identities=14% Similarity=0.211 Sum_probs=129.7
Q ss_pred cccceEEEEEEEecCceEEEEEeCCC--Cc-----ccCCCcEEEEEEc----CCCCCceeceEeeeCCCCCCCeEEEEEE
Q 003191 302 SRRTVDVLSASCLPCGTVELVLSKPA--NL-----RYNALSFFFLQVR----ELSWLQWHPFSVSSSPLEGKYHSSVLIK 370 (840)
Q Consensus 302 ~~~~~~vasv~~Lp~~vvrLtI~~p~--~~-----~~~PGQhvfL~vP----~is~~q~HPFTIaSsp~~~~~~Lsf~IK 370 (840)
.++.+++++++.++++++++++..+. .+ .|+||||+.|+++ +....++|||||+|.|++ +.++|+||
T Consensus 148 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~--~~~~i~Vk 225 (399)
T 4g1v_A 148 GWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTK--NGLRFAVK 225 (399)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCT--TCEEEEEE
T ss_pred cceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCCC--CeEEEEEE
Confidence 34667889999999999999998653 23 7999999999984 334578999999999863 78999999
Q ss_pred e--------cCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCC
Q 003191 371 V--------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPL 442 (840)
Q Consensus 371 ~--------~Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (840)
. .|.+|+.|++.+..
T Consensus 226 ~~~~~~~~~~G~~S~~L~~~l~~--------------------------------------------------------- 248 (399)
T 4g1v_A 226 MEAARENFPAGLVSEYLHKDAKV--------------------------------------------------------- 248 (399)
T ss_dssp CCCCBTTBCCCHHHHHHHHTCCT---------------------------------------------------------
T ss_pred eccCCCCCCCCEehhHHHhCCCC---------------------------------------------------------
Confidence 9 56688888653211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCC
Q 003191 443 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQ 522 (840)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 522 (840)
T Consensus 249 -------------------------------------------------------------------------------- 248 (399)
T 4g1v_A 249 -------------------------------------------------------------------------------- 248 (399)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCceeeeeccCcCCCCcCcc----CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEee
Q 003191 523 RPPPSRHPLLPPTKITASVEGPYGHEVPYHL----MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV 598 (840)
Q Consensus 523 ~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~~----~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWav 598 (840)
|+ ++.|+||||.+..+.. .+++++|||||+||||+++++++++.+. ..++|+++|++
T Consensus 249 -----------Gd--~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~------~~~~v~l~~~~ 309 (399)
T 4g1v_A 249 -----------GD--EIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCN------PNRPIYWIQSS 309 (399)
T ss_dssp -----------TC--EEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHC------TTSCEEEEEEE
T ss_pred -----------CC--EEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcC------CCCCEEEEEec
Confidence 13 5889999999765433 5889999999999999999999998764 13589999999
Q ss_pred cCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeC
Q 003191 599 KKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR 633 (840)
Q Consensus 599 R~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr 633 (840)
|+.+++.+. +.++++. .+..++++++++++
T Consensus 310 r~~~~~~~~-~el~~l~----~~~~~~~~~~~~s~ 339 (399)
T 4g1v_A 310 YDEKTQAFK-KHVDELL----AECANVDKIIVHTD 339 (399)
T ss_dssp SSSTTSTTH-HHHHHHH----TTCSSEEEEEEETT
T ss_pred CCHHHhhhH-HHHHHHH----HhCCCcEEEEEEeC
Confidence 999988544 4455553 23345777766654
No 11
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.89 E-value=1.5e-22 Score=210.39 Aligned_cols=168 Identities=21% Similarity=0.172 Sum_probs=127.6
Q ss_pred cceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 381 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~ 381 (840)
..+++.+++.+++++.++++. +..+.++||||++|+++..+..++|||||+|.+.+ +.++|+||.. |.+|+.|.+
T Consensus 5 ~~~~V~~~~~~~~~~~~l~l~-~~~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~~~G~~s~~l~~ 81 (248)
T 1fdr_A 5 VTGKVTKVQNWTDALFSLTVH-APVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTVPDGKLSPRLAA 81 (248)
T ss_dssp EEEEEEEEEECSSSEEEEEEE-CCCCCCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECCTTCSSHHHHHT
T ss_pred EEEEEEEEEEcCCCEEEEEEe-CCCCCcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEeCCCchhhHHHh
Confidence 356788899999999999996 55678999999999998666778999999999864 7899999987 889988852
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 461 (840)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (840)
+.
T Consensus 82 -l~----------------------------------------------------------------------------- 83 (248)
T 1fdr_A 82 -LK----------------------------------------------------------------------------- 83 (248)
T ss_dssp -CC-----------------------------------------------------------------------------
T ss_pred -CC-----------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191 462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 541 (840)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V 541 (840)
+|+ ++.|
T Consensus 84 -----------------------------------------------------------------------~Gd--~v~v 90 (248)
T 1fdr_A 84 -----------------------------------------------------------------------PGD--EVQV 90 (248)
T ss_dssp -----------------------------------------------------------------------TTC--EEEE
T ss_pred -----------------------------------------------------------------------CcC--EEEE
Confidence 013 4677
Q ss_pred c-cCcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCC
Q 003191 542 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF 619 (840)
Q Consensus 542 e-GPYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~ 619 (840)
+ ||||.+..+.. .+++++|||||+||||++++++++..+. ..++++|+|++|+.+++.+ .++++++. .
T Consensus 91 ~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~-~~el~~l~---~ 160 (248)
T 1fdr_A 91 VSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD------RFKNLVLVHAARYAADLSY-LPLMQELE---K 160 (248)
T ss_dssp ESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT------TCSEEEEEEEESSGGGCTT-HHHHHHHH---H
T ss_pred ecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC------CCCcEEEEEEcCCHHHhhH-HHHHHHHH---H
Confidence 8 99999653322 3789999999999999999999975432 2368999999999999844 44445542 1
Q ss_pred CCCCceEEEEEEeCCC
Q 003191 620 SDKLNLETFIYVTRET 635 (840)
Q Consensus 620 ~~~~~l~I~iyVTr~~ 635 (840)
....+++++.++|+++
T Consensus 161 ~~~~~~~~~~~~s~~~ 176 (248)
T 1fdr_A 161 RYEGKLRIQTVVSRET 176 (248)
T ss_dssp HTTTSEEEEEEESSSC
T ss_pred hCcCcEEEEEEEecCC
Confidence 1234688888888764
No 12
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.89 E-value=1.8e-22 Score=219.95 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=130.8
Q ss_pred cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 378 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk 378 (840)
...++.+++.+.+++.++++..+. .+.|+||||++|++|.. .++|||||+|.+. ++.++|+||.. |.+|+.
T Consensus 109 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~--~~~l~~~vk~~~~G~~S~~ 184 (338)
T 1krh_A 109 FEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGT--TETRSYSFSSQPG--NRLTGFVVRNVPQGKMSEY 184 (338)
T ss_dssp EEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTS--SCEEEEECCSCTT--CSEEEEEEECCTTCHHHHH
T ss_pred EEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCCC--CccccccccCCCC--CCeEEEEEEEcCCCCchhh
Confidence 456888899999999999998765 47899999999999853 5789999999986 48999999998 889998
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 458 (840)
Q Consensus 379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (840)
|++.+..
T Consensus 185 L~~~l~~------------------------------------------------------------------------- 191 (338)
T 1krh_A 185 LSVQAKA------------------------------------------------------------------------- 191 (338)
T ss_dssp HHTTCCT-------------------------------------------------------------------------
T ss_pred HhhccCC-------------------------------------------------------------------------
Confidence 8643210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191 459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 538 (840)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~ 538 (840)
|+ +
T Consensus 192 ---------------------------------------------------------------------------Gd--~ 194 (338)
T 1krh_A 192 ---------------------------------------------------------------------------GD--K 194 (338)
T ss_dssp ---------------------------------------------------------------------------TC--E
T ss_pred ---------------------------------------------------------------------------CC--E
Confidence 13 5
Q ss_pred eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCC
Q 003191 539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF 618 (840)
Q Consensus 539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~ 618 (840)
+.|+||||.+... ...++++|||||+||||++++++++..+. ..++++|+|++|+.+|+.+ .++++++.
T Consensus 195 v~v~gP~G~f~~~-~~~~~~vliagGtGiaP~~s~l~~l~~~~------~~~~v~l~~~~r~~~d~~~-~~el~~l~--- 263 (338)
T 1krh_A 195 MSFTGPFGSFYLR-DVKRPVLMLAGGTGIAPFLSMLQVLEQKG------SEHPVRLVFGVTQDCDLVA-LEQLDALQ--- 263 (338)
T ss_dssp EEEEEEECSCSCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHHC------CSSCEEEEEEESSGGGCCC-HHHHHHHH---
T ss_pred EEEECCccceEeC-CCCceEEEEEccccHhHHHHHHHHHHHcC------CCCeEEEEEEeCCHHHhhh-HHHHHHHH---
Confidence 7899999997654 23589999999999999999999998753 1357999999999999844 44444542
Q ss_pred CCCCCceEEEEEEeCCC
Q 003191 619 FSDKLNLETFIYVTRET 635 (840)
Q Consensus 619 ~~~~~~l~I~iyVTr~~ 635 (840)
.+..+++++.++++++
T Consensus 264 -~~~~~~~~~~~~s~~~ 279 (338)
T 1krh_A 264 -QKLPWFEYRTVVAHAE 279 (338)
T ss_dssp -HHCTTEEEEEEETTCC
T ss_pred -HhCCCeEEEEEEecCC
Confidence 1234688888888754
No 13
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=204.95 Aligned_cols=183 Identities=22% Similarity=0.421 Sum_probs=124.6
Q ss_pred eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccC-CCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191 539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEG-KSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 617 (840)
Q Consensus 539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~-~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~ 617 (840)
|.|+||||.+..+...+++++|||||+||||+++++++++++.+.+ .....++|+|+|++|+.+++.|+.++++++...
T Consensus 1 v~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~ 80 (186)
T 3a1f_A 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQ 80 (186)
T ss_dssp CCTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHH
T ss_pred CeEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHH
Confidence 4689999997654467899999999999999999999998764211 112357899999999999999888888776411
Q ss_pred C--CCCCCceEEEEEEeCCCCCCCcccccccccccccCCCCCCCceeEEecCCchhHHHHHHHHHHHHHHHHHHhhheee
Q 003191 618 F--FSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILY 695 (840)
Q Consensus 618 ~--~~~~~~l~I~iyVTr~~~~~~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (840)
. .....++++++|+|++.+.+.. . . |
T Consensus 81 ~~~~~~~~~~~~~~~~t~~~~~~~~-~----~-----------------------------------------------~ 108 (186)
T 3a1f_A 81 MQERNNAGFLSYNIYLTGWDESQAN-H----F-----------------------------------------------A 108 (186)
T ss_dssp HHHTTCTTSEEEEEEETTC-------------------------------------------------------------
T ss_pred HhhccCCCeEEEEEEEcCCCCCccc-c----e-----------------------------------------------e
Confidence 0 0013478999999986432100 0 0 0
Q ss_pred eCCCCCcchhHHHHHHHHHhhceeeeccceeeeeehhhhhhccccccCCCCccccccccccccccccccccccCcccccc
Q 003191 696 VNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNI 775 (840)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~W~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 775 (840)
+- |+.. .+.. .++ ..++
T Consensus 109 --------------------------------~~---~~~~--------~~~~------------------~g~--~~~~ 125 (186)
T 3a1f_A 109 --------------------------------VH---HDEE--------KDVI------------------TGL--KQKT 125 (186)
T ss_dssp -----------------------------------------------------------------------------CCE
T ss_pred --------------------------------ec---cccc--------cccC------------------CCC--cccc
Confidence 00 0000 0000 111 1245
Q ss_pred ccCCCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEeccc
Q 003191 776 LYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 838 (840)
Q Consensus 776 hyggRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~~c~s~~~~~~~~~~~f~fhs~sF 838 (840)
++ ||||++.+++++.+....+++.|++|||++|+++|++.|++.... ..++..++||.|+|
T Consensus 126 ~~-gR~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~~~v~~~l~~~g~~-~~~~~~~~~~~E~F 186 (186)
T 3a1f_A 126 LY-GRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSES-GPRGVHFIFNKENF 186 (186)
T ss_dssp EE-SCCCHHHHHHHHHHHSTTCEEEEEEESCHHHHHHHHHHHHHTCCC-STTCCEEEEECCCC
T ss_pred cc-CCCCHHHHHHHHHHhCCCCcEEEEEeCCHHHHHHHHHHHHHhhcc-CCCCCEEEEEeccC
Confidence 66 899999999887654444579999999999999999999986542 12345699999998
No 14
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.88 E-value=9.1e-22 Score=206.00 Aligned_cols=171 Identities=24% Similarity=0.281 Sum_probs=130.3
Q ss_pred cceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 381 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~ 381 (840)
..+++.+++.+++++.++++..+..+.++||||++|+++..+..++|||||+|.+.+ +.++|+||.. |.+|+.|.+
T Consensus 4 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~~~~G~~s~~l~~ 81 (257)
T 2qdx_A 4 YTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKVPDGPLTSRLQH 81 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECCTTCTTHHHHTT
T ss_pred EEEEEEEEEEcCCCeEEEEEeCCCCCccCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEEeCCCcchhHHHh
Confidence 456788899999999999999877788999999999998666678999999999863 7899999987 888988731
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 461 (840)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (840)
+ +
T Consensus 82 -l--~--------------------------------------------------------------------------- 83 (257)
T 2qdx_A 82 -L--K--------------------------------------------------------------------------- 83 (257)
T ss_dssp -C--C---------------------------------------------------------------------------
T ss_pred -C--C---------------------------------------------------------------------------
Confidence 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191 462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 541 (840)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V 541 (840)
+|+ ++.|
T Consensus 84 -----------------------------------------------------------------------~Gd--~v~v 90 (257)
T 2qdx_A 84 -----------------------------------------------------------------------EGD--ELMV 90 (257)
T ss_dssp -----------------------------------------------------------------------TTC--EEEE
T ss_pred -----------------------------------------------------------------------CCC--EEEE
Confidence 013 4677
Q ss_pred c-cCcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHH-HccCCC
Q 003191 542 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK-ESICPF 618 (840)
Q Consensus 542 e-GPYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~-el~~~~ 618 (840)
. ||||.+..+.. .+++++|||||+||||++++++++..+.. .++++|+|++|+.+++.+. ++++ ++....
T Consensus 91 ~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~-~el~~~l~~~~ 163 (257)
T 2qdx_A 91 SRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER------YEKVILVHGVRWVSELAYA-DFITKVLPEHE 163 (257)
T ss_dssp CSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH------CSEEEEEEEESSGGGCTTH-HHHHTTGGGCT
T ss_pred ecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC------CCeEEEEEEcCCHHHhHhH-HHHHHHHHhch
Confidence 8 99999754322 37899999999999999999999876531 2589999999999998544 4455 442100
Q ss_pred CC-C--CCceEEEEEEeCC
Q 003191 619 FS-D--KLNLETFIYVTRE 634 (840)
Q Consensus 619 ~~-~--~~~l~I~iyVTr~ 634 (840)
.. + ..+++++..+|++
T Consensus 164 ~~~~~~~~~~~~~~~~s~~ 182 (257)
T 2qdx_A 164 YFGDQVKEKLIYYPLVTRE 182 (257)
T ss_dssp TTHHHHHHHEEEEEEESSS
T ss_pred hhhccCCCcEEEEEEecCC
Confidence 00 0 2467787778775
No 15
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.87 E-value=4.8e-21 Score=207.89 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=118.6
Q ss_pred cceEEEEEEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--Cc-hhH
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GE-WTE 377 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg-~Tk 377 (840)
...++.+++.+.++++++++..+.. ..|+||||++|++|.. ++|||||+|.+.+ ++.++|.||.. |. +|+
T Consensus 9 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g---~~R~ySi~s~~~~-~~~l~i~Vk~~~~G~g~S~ 84 (321)
T 2pia_A 9 LRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNG---SRRTYSLCNDSQE-RNRYVIAVKRDSNGRGGSI 84 (321)
T ss_dssp EEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTS---CEEEEECCSCTTC-CSEEEEEEECCTTSCSHHH
T ss_pred EEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCCC---CcEEEEeCCCCCC-CCeEEEEEEEecCCcchhH
Confidence 4568889999999999999997653 3789999999999842 8899999999864 57899999986 54 899
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 378 NLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPL 457 (840)
Q Consensus 378 kL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (840)
.|++.+..
T Consensus 85 ~L~~~l~~------------------------------------------------------------------------ 92 (321)
T 2pia_A 85 SFIDDTSE------------------------------------------------------------------------ 92 (321)
T ss_dssp HHHHSCCT------------------------------------------------------------------------
T ss_pred HHHhcCCC------------------------------------------------------------------------
Confidence 88753311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q 003191 458 QEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKI 537 (840)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~ 537 (840)
|+
T Consensus 93 ----------------------------------------------------------------------------Gd-- 94 (321)
T 2pia_A 93 ----------------------------------------------------------------------------GD-- 94 (321)
T ss_dssp ----------------------------------------------------------------------------TC--
T ss_pred ----------------------------------------------------------------------------CC--
Confidence 12
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el 614 (840)
++.|+||||.+..+ ..+++++|||||+||||++++++++..+. .++++|+|++|+.+++.+. ++++++
T Consensus 95 ~v~v~gP~g~f~l~-~~~~~~vliagG~GItP~~s~l~~l~~~~-------~~~v~l~~~~r~~~~~~~~-~el~~l 162 (321)
T 2pia_A 95 AVEVSLPRNEFPLD-KRAKSFILVAGGIGITPMLSMARQLRAEG-------LRSFRLYYLTRDPEGTAFF-DELTSD 162 (321)
T ss_dssp EEEECCCBCCSCCC-TTCSEEEEEEEGGGHHHHHHHHHHHHHHC-------SSEEEEEEEESCGGGCTTH-HHHHST
T ss_pred EEEEeCCccccccC-CCCCCEEEEEecccHhHHHHHHHHHHHcC-------CCcEEEEEEECChhhhHHH-HHHhcC
Confidence 57899999987544 34789999999999999999999998753 1589999999999998554 444443
No 16
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.87 E-value=3.2e-21 Score=214.93 Aligned_cols=169 Identities=18% Similarity=0.259 Sum_probs=130.8
Q ss_pred ccceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcC-CC-CCceeceEeeeCCCCCCCeEEEEEEec-----
Q 003191 303 RRTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRE-LS-WLQWHPFSVSSSPLEGKYHSSVLIKVL----- 372 (840)
Q Consensus 303 ~~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~-is-~~q~HPFTIaSsp~~~~~~Lsf~IK~~----- 372 (840)
++.+++.+++.+++++.++++..+. ...++||||+.|+++. .. ..++|||||+|.|+ ++.++|+||..
T Consensus 154 ~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~~~~~ 231 (403)
T 1cqx_A 154 WRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKREGGGPQ 231 (403)
T ss_dssp CEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECCCBTTB
T ss_pred ceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEECCCCCC
Confidence 3567889999999999999998653 2479999999999983 32 36899999999885 47899999997
Q ss_pred --CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCC
Q 003191 373 --GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 450 (840)
Q Consensus 373 --Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (840)
|.+|+.|++.+..
T Consensus 232 ~~G~~S~~L~~~l~~----------------------------------------------------------------- 246 (403)
T 1cqx_A 232 PPGYVSNLLHDHVNV----------------------------------------------------------------- 246 (403)
T ss_dssp CCCHHHHHHHHHCCT-----------------------------------------------------------------
T ss_pred CCCeehHHHhhCCCC-----------------------------------------------------------------
Confidence 6688888764311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 451 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 530 (840)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 530 (840)
T Consensus 247 -------------------------------------------------------------------------------- 246 (403)
T 1cqx_A 247 -------------------------------------------------------------------------------- 246 (403)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHH
Q 003191 531 LLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 610 (840)
Q Consensus 531 ~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~ 610 (840)
|+ ++.|.||||.+..+....++++|||||+||||++++++++.. . ..++|+|+|++|+.+++.+ .++
T Consensus 247 ---Gd--~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~------~~~~v~l~~~~r~~~~~~~-~~e 313 (403)
T 1cqx_A 247 ---GD--QVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A------PPRQVVFVHGARNSAVHAM-RDR 313 (403)
T ss_dssp ---TC--EEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S------SCCCEEEEEEESCSSSCHH-HHH
T ss_pred ---CC--EEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C------CCCcEEEEEEeCChhhCcH-HHH
Confidence 12 578999999875433467899999999999999999999975 1 1358999999999999854 555
Q ss_pred HHHccCCCCCCCCceEEEEEEeCCC
Q 003191 611 YKESICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 611 l~el~~~~~~~~~~l~I~iyVTr~~ 635 (840)
++++. .+..+++++++++++.
T Consensus 314 l~~l~----~~~~~~~~~~~~s~~~ 334 (403)
T 1cqx_A 314 LREAA----KTYENLDLFVFYDQPL 334 (403)
T ss_dssp HHHHH----HHCTTEEEEEEESSCC
T ss_pred HHHHH----HhCCCcEEEEEECCCC
Confidence 55553 1234588888887754
No 17
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.87 E-value=1.4e-21 Score=206.42 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=64.0
Q ss_pred cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--------
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL-------- 372 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~-------- 372 (840)
..+++.+++.+++++.++++..+. ...++||||++|+++..+.+++|||||+|++.+ ++.++|+||..
T Consensus 17 ~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~ 95 (275)
T 1umk_A 17 YPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKVYFKDTHPKF 95 (275)
T ss_dssp EEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEECCCSSSBTTB
T ss_pred EEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeCCcEEEeccccCCccCC-CCeEEEEEEEeccCccccc
Confidence 456888999999999888888653 367999999999998666778999999998854 58999999987
Q ss_pred ---CchhHHHH
Q 003191 373 ---GEWTENLR 380 (840)
Q Consensus 373 ---Gg~TkkL~ 380 (840)
|.+|+.|.
T Consensus 96 ~~~G~~S~~L~ 106 (275)
T 1umk_A 96 PAGGKMSQYLE 106 (275)
T ss_dssp TTCCHHHHHHH
T ss_pred CCCChhHHHHh
Confidence 88888884
No 18
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.87 E-value=1.1e-21 Score=218.04 Aligned_cols=170 Identities=12% Similarity=0.127 Sum_probs=133.0
Q ss_pred ccceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCC--CCceeceEeeeCCCCCCCeEEEEEEec--Cch
Q 003191 303 RRTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW 375 (840)
Q Consensus 303 ~~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is--~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~ 375 (840)
++.+++++++.+++++.++++..+. ...|+||||+.|+++..+ ..++|||||+|.|. ++.++|+||.. |.+
T Consensus 152 ~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~~G~~ 229 (396)
T 1gvh_A 152 TRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKREEGGQV 229 (396)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECCTTCHH
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEcCCCcc
Confidence 3567889999999999999998653 257999999999998433 36899999999986 47899999998 889
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003191 376 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455 (840)
Q Consensus 376 TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (840)
|+.|++.+..
T Consensus 230 S~~L~~~l~~---------------------------------------------------------------------- 239 (396)
T 1gvh_A 230 SNWLHNHANV---------------------------------------------------------------------- 239 (396)
T ss_dssp HHHHHHTCCT----------------------------------------------------------------------
T ss_pred hHHHHhcCCC----------------------------------------------------------------------
Confidence 9998764211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT 535 (840)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~ 535 (840)
|+
T Consensus 240 ------------------------------------------------------------------------------Gd 241 (396)
T 1gvh_A 240 ------------------------------------------------------------------------------GD 241 (396)
T ss_dssp ------------------------------------------------------------------------------TC
T ss_pred ------------------------------------------------------------------------------CC
Confidence 12
Q ss_pred ceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc
Q 003191 536 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 615 (840)
Q Consensus 536 ~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~ 615 (840)
++.|.||||.+..+....++++|||||+||||++++++++..+. ..++++|+|++|+.+++.+ .++++++.
T Consensus 242 --~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~------~~~~v~l~~~~r~~~~~~~-~~el~~l~ 312 (396)
T 1gvh_A 242 --VVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG------HTAQVNWFHAAENGDVHAF-ADEVKELG 312 (396)
T ss_dssp --EEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT------CCSCEEEEEEESCTTTCCS-HHHHHHHH
T ss_pred --EEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcC------CCCcEEEEEEeCCHHHhhh-HHHHHHHH
Confidence 57899999987543346789999999999999999999998753 1358999999999999854 45555543
Q ss_pred CCCCCCCCceEEEEEEeCCC
Q 003191 616 CPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~~ 635 (840)
.+..+++++++++++.
T Consensus 313 ----~~~~~~~~~~~~s~~~ 328 (396)
T 1gvh_A 313 ----QSLPRFTAHTWYRQPS 328 (396)
T ss_dssp ----HTSSSEEEEEEESSCC
T ss_pred ----HHCCCeEEEEEECCCC
Confidence 1234688888887653
No 19
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.87 E-value=2.3e-21 Score=205.22 Aligned_cols=170 Identities=19% Similarity=0.215 Sum_probs=129.8
Q ss_pred ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCC-CCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 381 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~i-s~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~ 381 (840)
.+++.+++.+++++.++++..+..+.++||||++|+++.. +..++|||||+|.+.+ +.++|+||.. |.+|+.|.+
T Consensus 18 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~~~~G~~s~~l~~ 95 (272)
T 2bgi_A 18 AQTVTSVRHWTDTLFSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIKVPDGPLTSRLQH 95 (272)
T ss_dssp EEEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEECCTTCTTHHHHTT
T ss_pred EEEEEEEEEcCCCEEEEEEeCCCCCccCCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEEccCCCchhHHHh
Confidence 5678889999999999999987778899999999999854 5678999999999863 7899999987 889988741
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 461 (840)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (840)
+ +
T Consensus 96 -l--~--------------------------------------------------------------------------- 97 (272)
T 2bgi_A 96 -I--K--------------------------------------------------------------------------- 97 (272)
T ss_dssp -C--C---------------------------------------------------------------------------
T ss_pred -C--C---------------------------------------------------------------------------
Confidence 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191 462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 541 (840)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V 541 (840)
+|+ ++.|
T Consensus 98 -----------------------------------------------------------------------~Gd--~v~v 104 (272)
T 2bgi_A 98 -----------------------------------------------------------------------VGE--QIIL 104 (272)
T ss_dssp -----------------------------------------------------------------------TTC--EEEE
T ss_pred -----------------------------------------------------------------------CCC--EEEE
Confidence 013 5777
Q ss_pred c-cCcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHH-HccCC-
Q 003191 542 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK-ESICP- 617 (840)
Q Consensus 542 e-GPYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~-el~~~- 617 (840)
+ ||||.+..+.. .+++++|||||+||||++++++++..+. ..++++|+|++|+.+++.+. ++++ ++...
T Consensus 105 ~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~-~el~~~l~~~~ 177 (272)
T 2bgi_A 105 RPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE------KFDEVIMMHACRTVAELEYG-RQLVEALQEDP 177 (272)
T ss_dssp EEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT------SCSEEEEEEEESSSGGGHHH-HHHHHHHHHCT
T ss_pred eeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC------CCCcEEEEEEeCCHHHhhHH-HHHHHHHHhcc
Confidence 8 99999754322 3789999999999999999999886542 13589999999999998544 4455 54310
Q ss_pred CCCC--CCceEEEEEEeCC
Q 003191 618 FFSD--KLNLETFIYVTRE 634 (840)
Q Consensus 618 ~~~~--~~~l~I~iyVTr~ 634 (840)
...+ ..+++++..+|++
T Consensus 178 ~~~~~~~~~~~~~~~~s~~ 196 (272)
T 2bgi_A 178 LIGELVEGKLKYYPTTTRE 196 (272)
T ss_dssp TTTTTSTTTEEEEEEESSS
T ss_pred hhhcccCCcEEEEEEecCC
Confidence 0001 2568888888876
No 20
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=99.87 E-value=5.9e-21 Score=206.08 Aligned_cols=175 Identities=19% Similarity=0.202 Sum_probs=130.3
Q ss_pred ceEEEEEEEecC-----ceEEEEEeCCCCcccCCCcEEEEEEcCC----CCCceeceEeeeCCCC---CCCeEEEEEEec
Q 003191 305 TVDVLSASCLPC-----GTVELVLSKPANLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLE---GKYHSSVLIKVL 372 (840)
Q Consensus 305 ~~~vasv~~Lp~-----~vvrLtI~~p~~~~~~PGQhvfL~vP~i----s~~q~HPFTIaSsp~~---~~~~Lsf~IK~~ 372 (840)
..++.+++.+.+ ++.++++..+..+.|+||||++|+++.. ..+++|||||+|++.+ +++.++|+||..
T Consensus 39 ~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~ 118 (314)
T 1fnb_A 39 VGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRL 118 (314)
T ss_dssp EEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECC
T ss_pred EEEEEEEEEecCCCCCCcEEEEEEecCCCCCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEE
Confidence 457888888876 8999999987668899999999999854 2368899999999853 247899999963
Q ss_pred -----------CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCC
Q 003191 373 -----------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPP 441 (840)
Q Consensus 373 -----------Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (840)
|.+|+.|.+ +..
T Consensus 119 ~y~~~~g~~~~G~~S~~L~~-l~~-------------------------------------------------------- 141 (314)
T 1fnb_A 119 IYTNDAGETIKGVCSNFLCD-LKP-------------------------------------------------------- 141 (314)
T ss_dssp EEECTTSCEEECHHHHHHHH-CCT--------------------------------------------------------
T ss_pred EeccCCCCcCCCchhhHhhc-CCC--------------------------------------------------------
Confidence 778988875 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCC
Q 003191 442 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPP 521 (840)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 521 (840)
T Consensus 142 -------------------------------------------------------------------------------- 141 (314)
T 1fnb_A 142 -------------------------------------------------------------------------------- 141 (314)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCceeeeeccCcCCCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecC
Q 003191 522 QRPPPSRHPLLPPTKITASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 600 (840)
Q Consensus 522 ~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~ 600 (840)
|+ +|.|+||||.+.... ...++++|||||+||||+++++++++.+...+. ...++++|+|++|+
T Consensus 142 ------------Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v~L~~g~R~ 206 (314)
T 1fnb_A 142 ------------GA--EVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPT 206 (314)
T ss_dssp ------------TC--EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTB-CCCSEEEEEEEESS
T ss_pred ------------CC--EEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccc-cCCCCEEEEEecCC
Confidence 12 578999999875322 347899999999999999999999986532111 12358999999999
Q ss_pred cchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC
Q 003191 601 SNELSLLSNFYKESICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 601 ~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~ 635 (840)
.+++.+ .++++++.. ....+++++.++|+++
T Consensus 207 ~~d~~~-~~el~~l~~---~~~~~~~~~~~~s~~~ 237 (314)
T 1fnb_A 207 SSSLLY-KEEFEKMKE---KAPDNFRLDFAVSREQ 237 (314)
T ss_dssp GGGCCS-HHHHHHHHH---HCTTTEEEEEEETTTC
T ss_pred HHHhhh-HHHHHHHHH---hCCCcEEEEEEECCCC
Confidence 988844 444555431 1223688888888764
No 21
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=99.86 E-value=5.6e-21 Score=204.96 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=129.0
Q ss_pred ceEEEEEEEecC-----ceEEEEEeCCC-CcccCCCcEEEEEEcCC----CCCceeceEeeeCCCC---CCCeEEEEEEe
Q 003191 305 TVDVLSASCLPC-----GTVELVLSKPA-NLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLE---GKYHSSVLIKV 371 (840)
Q Consensus 305 ~~~vasv~~Lp~-----~vvrLtI~~p~-~~~~~PGQhvfL~vP~i----s~~q~HPFTIaSsp~~---~~~~Lsf~IK~ 371 (840)
..++.+.+.+.+ ++.++++..+. .+.|+||||++|+++.. ..+++|||||+|++.+ +++.++|+||.
T Consensus 23 ~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~Vk~ 102 (304)
T 2bmw_A 23 IGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQ 102 (304)
T ss_dssp EEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEEC
T ss_pred EEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEEEE
Confidence 457788888887 89999998653 57899999999999854 2368899999998852 25789999997
Q ss_pred ------------cCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCC
Q 003191 372 ------------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG 439 (840)
Q Consensus 372 ------------~Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (840)
.|.+|+.|.+ +.
T Consensus 103 ~~y~~~~~~~~~~G~~S~~L~~-l~------------------------------------------------------- 126 (304)
T 2bmw_A 103 LEYKHPESGETVYGVCSTYLTH-IE------------------------------------------------------- 126 (304)
T ss_dssp CEECSSSSSSCEECHHHHHHHT-CC-------------------------------------------------------
T ss_pred EEeeccccCcCCCcchhhHHhc-CC-------------------------------------------------------
Confidence 4668888754 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCC
Q 003191 440 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGS 519 (840)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 519 (840)
T Consensus 127 -------------------------------------------------------------------------------- 126 (304)
T 2bmw_A 127 -------------------------------------------------------------------------------- 126 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCceeeeeccCcCCCCcC-ccCCceEEEEEcCCCchhhHHHHHHHHHhhcc--CC-CCCCceEEEE
Q 003191 520 PPQRPPPSRHPLLPPTKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINE--GK-SCLPRNVLIV 595 (840)
Q Consensus 520 ~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~-~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~--~~-~~~~~kV~LV 595 (840)
+|+ ++.|+||||.+... ....++++|||||+||||+++++++++.+.+. +. ....++++|+
T Consensus 127 -------------~Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~ 191 (304)
T 2bmw_A 127 -------------PGS--EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLV 191 (304)
T ss_dssp -------------TTC--EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEE
T ss_pred -------------CCC--EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEE
Confidence 012 57899999986532 23578999999999999999999999865311 00 0113579999
Q ss_pred EeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC
Q 003191 596 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 596 WavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~ 635 (840)
|++|+.+++. +.++++++.. ....+++++.++|++.
T Consensus 192 ~g~r~~~d~~-~~~el~~~~~---~~~~~~~~~~~~s~~~ 227 (304)
T 2bmw_A 192 FGVPTTPNIL-YKEELEEIQQ---KYPDNFRLTYAISREQ 227 (304)
T ss_dssp EEESSGGGCT-THHHHHHHHH---HCTTTEEEEEEETTTC
T ss_pred EEeCChHhcc-hHHHHHHHHH---hCCCcEEEEEEEcCCC
Confidence 9999998884 4455555431 1123688888888764
No 22
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=99.86 E-value=1.1e-20 Score=211.68 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=130.6
Q ss_pred cceEEEEEEEecC-----ceEEEEEeCCC-CcccCCCcEEEEEEcCC----CCCceeceEeeeCCCC---CCCeEEEEEE
Q 003191 304 RTVDVLSASCLPC-----GTVELVLSKPA-NLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLE---GKYHSSVLIK 370 (840)
Q Consensus 304 ~~~~vasv~~Lp~-----~vvrLtI~~p~-~~~~~PGQhvfL~vP~i----s~~q~HPFTIaSsp~~---~~~~Lsf~IK 370 (840)
...++.+++.+.+ ++.++++..+. .+.|+||||++|+++.. ..+++|||||+|++.+ +++.++|+||
T Consensus 123 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk 202 (402)
T 2b5o_A 123 FLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVR 202 (402)
T ss_dssp EEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEE
T ss_pred EEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEE
Confidence 3567888888887 89999998765 47899999999998753 2368999999999863 2578999999
Q ss_pred e------------cCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCC
Q 003191 371 V------------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV 438 (840)
Q Consensus 371 ~------------~Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (840)
. .|.+|+.|++ +.
T Consensus 203 ~~~y~~~~~~~~~~G~~S~~L~~-l~------------------------------------------------------ 227 (402)
T 2b5o_A 203 QLEYQDPESGETVYGVCSTYLCN-LP------------------------------------------------------ 227 (402)
T ss_dssp CCEEECTTTCCEEECHHHHHHHT-CC------------------------------------------------------
T ss_pred EeeecccccCcCCCCchhHHHhh-CC------------------------------------------------------
Confidence 8 4778888764 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCC
Q 003191 439 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQG 518 (840)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 518 (840)
T Consensus 228 -------------------------------------------------------------------------------- 227 (402)
T 2b5o_A 228 -------------------------------------------------------------------------------- 227 (402)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCC-CceeeeeccCcCCCCc-CccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEE
Q 003191 519 SPPQRPPPSRHPLLPP-TKITASVEGPYGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 596 (840)
Q Consensus 519 ~~~~~~~~~~~~~~pg-~~~~V~VeGPYG~~~~-~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVW 596 (840)
+| + ++.|+||||.+.. +....++++|||||+||||+++++++++.+..++. ...++++|+|
T Consensus 228 --------------~G~d--~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~-~~~~~v~L~~ 290 (402)
T 2b5o_A 228 --------------VGTD--DVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDY-KFKGKAWLIF 290 (402)
T ss_dssp --------------TTCC--CEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSC-CCCSEEEEEE
T ss_pred --------------CCCc--eEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccc-cccCCEEEEE
Confidence 01 2 4778999998753 22357899999999999999999999986532111 1246899999
Q ss_pred eecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC
Q 003191 597 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 597 avR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~ 635 (840)
++|+.+|+. +.++++++.. ....++++++++++++
T Consensus 291 g~R~~~d~~-~~~eL~~l~~---~~~~~~~v~~~~S~~~ 325 (402)
T 2b5o_A 291 GVPYTANIL-YKDDFEKMAA---ENPDNFRLTYAISREQ 325 (402)
T ss_dssp EESSGGGCT-THHHHHHHHH---HCTTTEEEEEEETTTC
T ss_pred ecCCHHHhH-HHHHHHHHHH---hCCCcEEEEEEECCCC
Confidence 999998874 4455555531 1223688888888764
No 23
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.84 E-value=5.4e-20 Score=193.64 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=119.2
Q ss_pred ceEEEEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEe--cCchhHHHHH
Q 003191 305 TVDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV--LGEWTENLRD 381 (840)
Q Consensus 305 ~~~vasv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~--~Gg~TkkL~~ 381 (840)
..++.+++.+.+++.++++..+. ...++||||++|+++..+..++|||||+|.+.+ ++.++|+||. .|..|+.|.+
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~~G~~S~~l~~ 85 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGDETTGTYKLSK 85 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCCTTSHHHHHHT
T ss_pred ceEEEEEEEecCCEEEEEEEcCcccccCCCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEecCCchHHHHhc
Confidence 46788899999999999998765 357999999999998655688999999998854 5799999999 8999987741
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 461 (840)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (840)
++
T Consensus 86 -l~----------------------------------------------------------------------------- 87 (262)
T 1ep3_B 86 -LE----------------------------------------------------------------------------- 87 (262)
T ss_dssp -CC-----------------------------------------------------------------------------
T ss_pred -CC-----------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191 462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 541 (840)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V 541 (840)
+|+ ++.|
T Consensus 88 -----------------------------------------------------------------------~Gd--~v~v 94 (262)
T 1ep3_B 88 -----------------------------------------------------------------------SGA--KVDV 94 (262)
T ss_dssp -----------------------------------------------------------------------TTC--EEEE
T ss_pred -----------------------------------------------------------------------CCC--EEEE
Confidence 013 5789
Q ss_pred ccCcCC-CCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191 542 EGPYGH-EVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614 (840)
Q Consensus 542 eGPYG~-~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el 614 (840)
+||||+ +..+.. ..++++|||||+||||++++++++..+. ++++|+|++|+.+++.+. ++++++
T Consensus 95 ~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~--------~~v~l~~~~r~~~~~~~~-~el~~l 160 (262)
T 1ep3_B 95 MGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG--------CQMTILLGFASENVKILE-NEFSNL 160 (262)
T ss_dssp EEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT--------CEEEEEEEESSGGGCCCH-HHHHTS
T ss_pred EcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC--------CeEEEEEEcCCHHHhhhH-HHHhhh
Confidence 999998 543322 3789999999999999999999998642 479999999999998544 444443
No 24
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=99.83 E-value=1.1e-19 Score=196.11 Aligned_cols=90 Identities=22% Similarity=0.424 Sum_probs=66.3
Q ss_pred eeeeccCcCCCCcCc--cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc
Q 003191 538 TASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 615 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~--~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~ 615 (840)
++.|+||||.+.... ...++++|||||+||||++++++++..+... ...++++|+|++|+.+++. +.++++++.
T Consensus 146 ~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~~---~~~~~v~l~~g~r~~~d~~-~~~el~~l~ 221 (314)
T 2rc5_A 146 EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLI---KFTGNITLVYGAPYSDELV-MMDYLKGLE 221 (314)
T ss_dssp EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCSS---CBCSCEEEEEEESSGGGSC-SHHHHHHHH
T ss_pred EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhccc---CCCCcEEEEEEeCCHHHHh-HHHHHHHHH
Confidence 578999999875422 3578999999999999999999999865311 1235799999999999874 445555543
Q ss_pred CCCCCCCCceEEEEEEeCCC
Q 003191 616 CPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~~ 635 (840)
.+..+++++.++|++.
T Consensus 222 ----~~~~~~~~~~~~s~~~ 237 (314)
T 2rc5_A 222 ----SKHKNFKLITAISREE 237 (314)
T ss_dssp ----HHHSSEEEEEEETTTC
T ss_pred ----HhCCcEEEEEEECCCC
Confidence 1113688888888764
No 25
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.83 E-value=5.5e-20 Score=193.36 Aligned_cols=207 Identities=17% Similarity=0.197 Sum_probs=145.4
Q ss_pred cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--------
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL-------- 372 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~-------- 372 (840)
..+++.+++.+.+++.++++..+. .+.++||||++|+++..+..++|||||+|.+.+ ++.++|+||..
T Consensus 13 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~ 91 (270)
T 2cnd_A 13 IHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFKNEHPKF 91 (270)
T ss_dssp EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCSSCBTTB
T ss_pred EEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEeccCccccc
Confidence 456888899999999999998654 467999999999998666778999999998864 57999999974
Q ss_pred ---CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCC
Q 003191 373 ---GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 449 (840)
Q Consensus 373 ---Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (840)
|.+|+.|. .+..
T Consensus 92 ~~~G~~s~~l~-~l~~---------------------------------------------------------------- 106 (270)
T 2cnd_A 92 PNGGLMTQYLD-SLPV---------------------------------------------------------------- 106 (270)
T ss_dssp TTCCHHHHHHH-HCCT----------------------------------------------------------------
T ss_pred CCCCchhhHHh-cCCC----------------------------------------------------------------
Confidence 67888874 2110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191 450 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 529 (840)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 529 (840)
T Consensus 107 -------------------------------------------------------------------------------- 106 (270)
T 2cnd_A 107 -------------------------------------------------------------------------------- 106 (270)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceeeeeccCcCCCCc--------C--ccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeec
Q 003191 530 PLLPPTKITASVEGPYGHEVP--------Y--HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVK 599 (840)
Q Consensus 530 ~~~pg~~~~V~VeGPYG~~~~--------~--~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR 599 (840)
|+ ++.|+||||.+.. + ....++++|||||+||||+++++++++.+..+ ..++++|+|++|
T Consensus 107 ----Gd--~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~----~~~~v~l~~~~r 176 (270)
T 2cnd_A 107 ----GS--YIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPE----DHTEMHLVYANR 176 (270)
T ss_dssp ----TC--EEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTT----CCCEEEEEEEES
T ss_pred ----CC--EEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCCC----CCcEEEEEEEcC
Confidence 12 5788999997321 1 02478999999999999999999999865211 246899999999
Q ss_pred CcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCCC---C-CCcccccccccccccCCCCCCCceeEEecCCch
Q 003191 600 KSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETE---P-PLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 670 (840)
Q Consensus 600 ~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~~---~-~~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~ 670 (840)
+.+++.+. ++++++.. ....+++++..++++.. . ....+.+++.++....+...+....++|||...
T Consensus 177 ~~~d~~~~-~el~~l~~---~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp~~m 247 (270)
T 2cnd_A 177 TEDDILLR-DELDRWAA---EYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPM 247 (270)
T ss_dssp CGGGCTTH-HHHHHHHH---HCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHH
T ss_pred CHHHcchH-HHHHHHHH---HCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEEEEECCHHH
Confidence 99998544 44444431 12235788777776321 1 112344444433333444334566789999764
No 26
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.62 E-value=1.6e-14 Score=151.65 Aligned_cols=74 Identities=8% Similarity=0.081 Sum_probs=57.5
Q ss_pred cceEEEEEEEecCceEEEEEeCCCC--c-ccCCCcEEEEEEcC-CCCCceeceEeeeCCCCCCCeEEEEEEec---Cchh
Q 003191 304 RTVDVLSASCLPCGTVELVLSKPAN--L-RYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVL---GEWT 376 (840)
Q Consensus 304 ~~~~vasv~~Lp~~vvrLtI~~p~~--~-~~~PGQhvfL~vP~-is~~q~HPFTIaSsp~~~~~~Lsf~IK~~---Gg~T 376 (840)
...++.+++.+..++.++++..+.. + .++||||+-|.++. -....+++||+++.+. +.+++.++.. |..|
T Consensus 9 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~~~~G~~S 85 (252)
T 2gpj_A 9 RELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLHDTDGPAS 85 (252)
T ss_dssp EEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECCSSCCHHH
T ss_pred EEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEeCCCCcHH
Confidence 4578889999999999999987642 3 47999999999984 3456889999999764 4666766655 6778
Q ss_pred HHHH
Q 003191 377 ENLR 380 (840)
Q Consensus 377 kkL~ 380 (840)
+.|.
T Consensus 86 ~~l~ 89 (252)
T 2gpj_A 86 SWAK 89 (252)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7663
No 27
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.54 E-value=1e-14 Score=162.10 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=62.0
Q ss_pred eeeecc-CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHcc
Q 003191 538 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 615 (840)
Q Consensus 538 ~V~VeG-PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~ 615 (840)
+|.|.| |.|.+....+..++++|||||+||||++++++++..+.. ..++.|+|++|+. +|+ ++.++++++.
T Consensus 209 ~v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~------~~~~~L~~G~R~~~~d~-ly~~El~~~~ 281 (374)
T 1ddg_A 209 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA------PGKNWLFFGNPHFTEDF-LYQVEWQRYV 281 (374)
T ss_dssp EEEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC------CSCEEEEEEESCHHHHC-TTHHHHHHHH
T ss_pred EEEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC------CCCEEEEEEeCCchhhh-hHHHHHHHHH
Confidence 467777 555654332456889999999999999999999986541 3579999999998 565 4555555543
Q ss_pred CCCCCCCCceEEEEEEeCCC
Q 003191 616 CPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~~ 635 (840)
.+...+++++.++|+.
T Consensus 282 ----~~~~~~~l~~a~Srd~ 297 (374)
T 1ddg_A 282 ----KEGVLTRIDLAWSRDQ 297 (374)
T ss_dssp ----HTTSCCEEEEEETTSS
T ss_pred ----HhCCCcEEEEEEecCC
Confidence 1223457777787764
No 28
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.53 E-value=5e-14 Score=157.60 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=67.2
Q ss_pred CceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHH
Q 003191 535 TKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKE 613 (840)
Q Consensus 535 ~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~e 613 (840)
+++.+.|+||+|.+....+...+++|||||+||||+++++++.....+.+. ...++.|+|++|+. +|+ ++.+++++
T Consensus 220 d~v~v~v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~--~~~~v~L~~G~R~~~~d~-ly~~el~~ 296 (393)
T 4dql_A 220 DTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQ--SLGEAHLYFGCRSPHEDY-LYQEELEN 296 (393)
T ss_dssp CEEEEEEECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC--CCCCEEEEEEESCTTTCC-TTHHHHHH
T ss_pred CEEEEEEEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCC--CCCCEEEEEEECCcchhh-HHHHHHHH
Confidence 556788999999876543456789999999999999999998643221221 23579999999995 565 45566666
Q ss_pred ccCCCCCCCCceEEEEEEeCCC
Q 003191 614 SICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 614 l~~~~~~~~~~l~I~iyVTr~~ 635 (840)
+. +...+++++.++|++
T Consensus 297 ~~-----~~~~l~l~~a~Sr~~ 313 (393)
T 4dql_A 297 AQ-----SEGIITLHTAFSRMP 313 (393)
T ss_dssp HH-----HTTSCEEEEEESSCT
T ss_pred HH-----hCCCeEEEEEEeCCC
Confidence 53 224678888888753
No 29
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.39 E-value=1.2e-12 Score=148.11 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=64.1
Q ss_pred eeeecc-CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcc-hHHHHHHHHHHcc
Q 003191 538 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESI 615 (840)
Q Consensus 538 ~V~VeG-PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~-dl~wl~~~l~el~ 615 (840)
+|.|.| |+|.+....+..++++|||||+||||+++++++++.+.+++ .....++.|+|++|+.+ |+ ++.++++++.
T Consensus 261 ~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~-ly~~El~~~~ 338 (435)
T 1f20_A 261 VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDH-IYREETLQAK 338 (435)
T ss_dssp EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEESCTTTSC-TTHHHHHHHH
T ss_pred EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhc-cCCCCCEEEEEeecccccch-hHHHHHHHHH
Confidence 577888 66676543344678999999999999999999987642110 01245799999999997 54 3456666653
Q ss_pred CCCCCCCCceEEEEEEeCCC
Q 003191 616 CPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~~ 635 (840)
.....+++++.++|+.
T Consensus 339 ----~~~~~~~l~~a~Sr~~ 354 (435)
T 1f20_A 339 ----NKGVFRELYTAYSREP 354 (435)
T ss_dssp ----HTTSEEEEEEEESSCT
T ss_pred ----HcCCccEEEEEECCCC
Confidence 1233457888888764
No 30
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.35 E-value=1.8e-12 Score=124.98 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=49.4
Q ss_pred eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHH
Q 003191 539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE 613 (840)
Q Consensus 539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~e 613 (840)
+.|+||||++... ...++++|||||+||||++|+++++.++. ++++++ ++|+.+++.+.++ +++
T Consensus 3 ~~v~GP~G~~~~~-~~~~~~llIaGG~GiaPl~sm~~~l~~~~--------~~v~l~-g~R~~~~~~~~~e-l~~ 66 (142)
T 3lyu_A 3 LNVAGPLGTPVPM-EKFGKILAIGAYTGIVEVYPIAKAWQEIG--------NDVTTL-HVTFEPMVILKEE-LEK 66 (142)
T ss_dssp ----CCCSCCBCC-CCCSEEEEEEETTHHHHHHHHHHHHHHTT--------CEEEEE-EEEEGGGCCSHHH-HHT
T ss_pred eeeeCCCCCCccC-CCCCeEEEEECcCcHHHHHHHHHHHHhcC--------CcEEEE-EeCCHHHhhHHHH-HHH
Confidence 4689999997654 45789999999999999999999997542 379999 9999999966544 444
No 31
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.32 E-value=2.2e-11 Score=141.27 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=65.2
Q ss_pred eeeeeccCcC-CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHc
Q 003191 537 ITASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES 614 (840)
Q Consensus 537 ~~V~VeGPYG-~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el 614 (840)
++|.|.||+| .+....+...+++|||||+|||||++++++.....+.+......++.|+|++|+. +|+. +.++++++
T Consensus 359 ~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~l-y~dEL~~~ 437 (539)
T 2qtl_A 359 PKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYL-FRKELRHF 437 (539)
T ss_dssp CEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCT-THHHHHHH
T ss_pred eEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhH-HHHHHHHH
Confidence 3788999997 4433223457899999999999999999996543321110124679999999999 5764 45555554
Q ss_pred cCCCCCCCCceEEEEEEeCCCC
Q 003191 615 ICPFFSDKLNLETFIYVTRETE 636 (840)
Q Consensus 615 ~~~~~~~~~~l~I~iyVTr~~~ 636 (840)
. .....+++++.++|+..
T Consensus 438 ~----~~g~~~~l~~afSRd~~ 455 (539)
T 2qtl_A 438 L----KHGILTHLKVSFSRDAP 455 (539)
T ss_dssp H----HTTSSCEEEEEESSSCC
T ss_pred H----HhCCCcEEEEEEccCCC
Confidence 3 12344688888888653
No 32
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.31 E-value=7.4e-12 Score=149.24 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=63.8
Q ss_pred eeeecc-CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcc-hHHHHHHHHHHcc
Q 003191 538 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESI 615 (840)
Q Consensus 538 ~V~VeG-PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~-dl~wl~~~l~el~ 615 (840)
+|.|.| |.|.+....+...+++|||||+||||+++++++++.+.+.. ....+++.|+|++|+.+ |+. +.++++++.
T Consensus 482 ~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~v~L~~G~R~~~~D~l-y~dEL~~~~ 559 (688)
T 1tll_A 482 VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDHI-YREETLQAK 559 (688)
T ss_dssp EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHS-CCCCCCEEEEEEESCTTTTCT-THHHHHHHH
T ss_pred EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhc-cCCCCCEEEEEEeccchhhhh-HHHHHHHHH
Confidence 577888 66676433234678999999999999999999988752110 01246899999999997 553 455565553
Q ss_pred CCCCCCCCceEEEEEEeCCC
Q 003191 616 CPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 616 ~~~~~~~~~l~I~iyVTr~~ 635 (840)
.....+++++.++++.
T Consensus 560 ----~~~~~~~l~~a~Sr~~ 575 (688)
T 1tll_A 560 ----NKGVFRELYTAYSREP 575 (688)
T ss_dssp ----HTTSEEEEEEEESSCT
T ss_pred ----HcCCceEEEEEECCCC
Confidence 1233467888888764
No 33
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.29 E-value=2.4e-12 Score=153.26 Aligned_cols=94 Identities=12% Similarity=0.212 Sum_probs=63.1
Q ss_pred eeeeccCcCCCC--------------cCccCCceEEEEEcCCCchhhHHHHHHHHHhhcc----CCCCCCceEEEEEeec
Q 003191 538 TASVEGPYGHEV--------------PYHLMYENLILVAGGIGISPFLAILSDILHRINE----GKSCLPRNVLIVWAVK 599 (840)
Q Consensus 538 ~V~VeGPYG~~~--------------~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~----~~~~~~~kV~LVWavR 599 (840)
++.|+||+|.+. ...+...+++|||||+|||||+++++++..+... +......++.|+|++|
T Consensus 493 ~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R 572 (682)
T 2bpo_A 493 HYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSR 572 (682)
T ss_dssp CCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEES
T ss_pred ceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecC
Confidence 466888888851 0112356899999999999999999998875420 0111246899999999
Q ss_pred CcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC
Q 003191 600 KSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 600 ~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~ 635 (840)
+.+|+. ++++++++. ......+++++.++|++
T Consensus 573 ~~~D~l-y~dEl~~~~---~~~g~~~~l~~afSr~d 604 (682)
T 2bpo_A 573 NTDDFL-YQDEWPEYA---KKLDGSFEMVVAHSRLP 604 (682)
T ss_dssp SSSSCT-TTTTHHHHH---HHHGGGEEEEEEESCCT
T ss_pred Chhhhh-hHHHHHHHH---HhcCCceEEEEEECCCC
Confidence 998874 444444431 01124578888888853
No 34
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.26 E-value=2.7e-12 Score=125.86 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=50.0
Q ss_pred e-eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191 538 T-ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614 (840)
Q Consensus 538 ~-V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el 614 (840)
+ +.|+||||++... ...++++|||||+||||++++++++.++. ++++|+ ++|+.+++.+.++ ++++
T Consensus 6 ~vl~v~gP~G~~f~~-~~~~~~llIaGG~GItPl~sm~~~l~~~~--------~~v~l~-g~r~~~d~~~~~e-l~~l 72 (158)
T 3lrx_A 6 SLLNVAGPLGTPVPM-EKFGKILAIGAYTGIVEVYPIAKAWQEIG--------NDVTTL-HVTFEPMVILKEE-LEKA 72 (158)
T ss_dssp ------CCCCCCBCC-CCCSEEEEEEETTHHHHHHHHHHHHHHHT--------CEEEEE-EECBGGGCCSHHH-HHHH
T ss_pred EeeEEECCCCCCCcc-CCCCeEEEEEccCcHHHHHHHHHHHHhcC--------CcEEEE-EeCCHHHhhHHHH-HHHH
Confidence 5 4899999997543 46789999999999999999999997542 379999 9999999976554 4444
No 35
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.24 E-value=1.9e-11 Score=139.31 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=61.9
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHccC
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC 616 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~~ 616 (840)
+|.|.||+|.+....+...+++|||||+|||||++++++.....+.+. ...++.|+|++|+. +|+. +.++++++..
T Consensus 289 ~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~--~~~~~~Lf~G~R~~~~D~l-y~dEl~~l~~ 365 (458)
T 3qfs_A 289 LVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK--EVGETLLYYGCRRSDEDYL-YREELAQFHR 365 (458)
T ss_dssp EEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHTC--CCCCEEEEEEESCTTTSCT-THHHHHHHHH
T ss_pred EEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcCC--CCCCEEEEEEeCCchHhhh-HHHHHHHHHH
Confidence 688899999875433446799999999999999999998643211111 23579999999996 5664 4455555431
Q ss_pred CCCCCCCceEEEEEEeCCC
Q 003191 617 PFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~~ 635 (840)
+....++++.++|+.
T Consensus 366 ----~g~l~~l~~a~SRd~ 380 (458)
T 3qfs_A 366 ----DGALTQLNVAFSREQ 380 (458)
T ss_dssp ----HTSSSEEEEEETTSS
T ss_pred ----cCCCCEEEEEEECCC
Confidence 122236777777754
No 36
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.18 E-value=4.5e-11 Score=140.89 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=64.2
Q ss_pred eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcc-hHHHHHHHHHHccC
Q 003191 538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESIC 616 (840)
Q Consensus 538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~-dl~wl~~~l~el~~ 616 (840)
+|.|.||+|++....+...+++|||||+||||+++++++.+...+.+. ...++.|+|++|+.+ |+. +.++++++.
T Consensus 449 ~v~v~~p~g~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~--~~~~~~L~~G~R~~~~D~l-y~~el~~~~- 524 (618)
T 3qe2_A 449 LVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK--EVGETLLYYGCRRSDEDYL-YREELAQFH- 524 (618)
T ss_dssp EEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC--CCCCEEEEEEESCTTTSCT-THHHHHHHH-
T ss_pred EEEEEEecCcccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCC--CCCCEEEEEecCCCccccc-hHHHHHHHH-
Confidence 678889999875433446789999999999999999999875432221 245799999999984 664 455555543
Q ss_pred CCCCCCCceEEEEEEeCCC
Q 003191 617 PFFSDKLNLETFIYVTRET 635 (840)
Q Consensus 617 ~~~~~~~~l~I~iyVTr~~ 635 (840)
......++++.++|+.
T Consensus 525 ---~~g~l~~l~~a~Srd~ 540 (618)
T 3qe2_A 525 ---RDGALTQLNVAFSREQ 540 (618)
T ss_dssp ---HHTSSSEEEEEETTSS
T ss_pred ---hcCCCcEEEEEEcCCC
Confidence 1122237777788764
No 37
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=45.77 E-value=7.3 Score=39.88 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=25.7
Q ss_pred CCCCHHHHHHhhcccCCCceEEEEEeCChhhHHH-HHHHHHhc
Q 003191 779 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSS-VAKEIRSH 820 (840)
Q Consensus 779 gRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~-Va~~c~s~ 820 (840)
||.+- +++++.... ..++..|++|||++|+++ +++.+.+.
T Consensus 219 g~v~~-~~l~~~l~~-~~~~~~vyvCGp~~m~~~~~~~~L~~~ 259 (270)
T 2cnd_A 219 GFVTE-AVLREHVPE-GGDDTLALACGPPPMIQFAISPNLEKM 259 (270)
T ss_dssp SSCCH-HHHHHHSCC-CSSSEEEEEECCHHHHHTTTHHHHHTT
T ss_pred ccCCH-HHHHHhcCC-CcCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 56653 334443222 123467999999999997 57787763
No 38
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=30.60 E-value=12 Score=40.76 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=10.4
Q ss_pred cccCCCCCHHHHHHh
Q 003191 775 ILYGSRPDFKEIFGS 789 (840)
Q Consensus 775 vhyggRPdl~~I~~~ 789 (840)
..-..||+.+++++.
T Consensus 308 ~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 308 TEPTQRMTITEFMNH 322 (400)
T ss_dssp SSGGGSCCHHHHHHS
T ss_pred CChhHCcCHHHHhcC
Confidence 344578888888764
No 39
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=25.58 E-value=15 Score=39.91 Aligned_cols=10 Identities=20% Similarity=-0.004 Sum_probs=6.0
Q ss_pred eeeccCcCCC
Q 003191 539 ASVEGPYGHE 548 (840)
Q Consensus 539 V~VeGPYG~~ 548 (840)
+.=+|-||..
T Consensus 69 ~LG~G~~g~V 78 (400)
T 1nxk_A 69 VLGLGINGKV 78 (400)
T ss_dssp EEEEETTEEE
T ss_pred eeeeccCeEE
Confidence 4446777763
No 40
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=24.38 E-value=49 Score=35.46 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=21.5
Q ss_pred ceEEEEEcCCC--chhhHHHHHHHHHh
Q 003191 556 ENLILVAGGIG--ISPFLAILSDILHR 580 (840)
Q Consensus 556 d~vVLIAGGsG--ITP~lsiL~~Ll~~ 580 (840)
+++++.|||+| |.|.++++++|.++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhC
Confidence 57899999997 88999999998764
Done!