BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003192
(840 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 169 ESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLSRE 228
E + R +++ + L+ILDD+W L+ C++LLT+R + V
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSV 273
Query: 229 MDSEINFLVGI---LSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285
M + ++V + L +E+ + V ++ DL A +I KEC G P+ + I
Sbjct: 274 MGPK--YVVPVESSLGKEKGLEILSLFVN----MKKADLPEQAHSIIKECKGSPLVVSLI 327
Query: 286 AKALRE-ENLFEWKNALLE------LKRPSWRNFSGVQAAACSTIEL 325
LR+ N +E+ L+ +++ S ++ + A ++E+
Sbjct: 328 GALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 169 ESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLSRE 228
E + R +++ + L+ILDD+W L+ C++LLT+R + V
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSV 279
Query: 229 MDSEINFLVGI---LSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285
M + ++V + L +E+ + V ++ DL A +I KEC G P+ + I
Sbjct: 280 MGPK--YVVPVESSLGKEKGLEILSLFVN----MKKADLPEQAHSIIKECKGSPLVVSLI 333
Query: 286 AKALRE 291
LR+
Sbjct: 334 GALLRD 339
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 169 ESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLSRE 228
E + R +++ + L+ILDD+W L+ C++LLT+R + V
Sbjct: 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFD-------NQCQILLTTRDKSVTDSV 273
Query: 229 MDSE----INFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284
M + + +G E SLF M E DL + A +I KEC G P+ +
Sbjct: 274 MGPKHVVPVESGLGREKGLEILSLFVNMKKE-------DLPAEAHSIIKECKGSPLVVSL 326
Query: 285 IAKALRE 291
I LR+
Sbjct: 327 IGALLRD 333
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 18/127 (14%)
Query: 169 ESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLSRE 228
E + R +++ + L+ILDD+W L+ C++LLT+ + V
Sbjct: 228 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFD-------NQCQILLTTSDKSVTDSV 280
Query: 229 MDSE----INFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284
M + + +G E SLF M E DL + A +I KEC G P+ +
Sbjct: 281 MGPKHVVPVESGLGREKGLEILSLFVNMKKE-------DLPAEAHSIIKECKGSPLVVSL 333
Query: 285 IAKALRE 291
I LR+
Sbjct: 334 IGALLRD 340
>pdb|2OOG|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|B Chain B, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|C Chain C, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|D Chain D, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|E Chain E, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|F Chain F, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|A Chain A, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|B Chain B, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|C Chain C, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|D Chain D, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|E Chain E, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|F Chain F, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|G Chain G, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|H Chain H, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
Length = 287
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 706 VEGVACDAFP-----LLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILS 760
+E + D +P LL SL H+L N K+ NG + SF + + K+ NK ++
Sbjct: 138 IETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVK 197
Query: 761 VSIARGLQQLQVIDVTECKSMEVILGTE 788
+ LQQ + E +S + LG +
Sbjct: 198 LVDKGELQQFNDQRLKEIRSYAIGLGPD 225
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 24/104 (23%)
Query: 597 TTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTI 656
TT+E + QG +P G+ ++ + L L N+ L NG
Sbjct: 10 TTVECYSQGRTSVPTGIPAQ---------------------TTYLDLETNSLKSLPNGVF 48
Query: 657 MQLKGIEDLYLG--ELQDVKN-VLNELDAEGFLQLKHLHVQNSP 697
+L + LYLG +LQ + N V N+L + +L L +Q+ P
Sbjct: 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 549 REIGRLSKLRLLDLTNCSKLKSIPPNV-------ERLNIERSNAS---LDELKHLSRLTT 598
R +G L +L L ++LK++PP + E+L++ +N + L L L T
Sbjct: 122 RGLGELQELYL----KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 177
Query: 599 LEIHIQGAKILPRGLFSKKLERYKILIGDEW 629
L + +P+G F L + L G+ W
Sbjct: 178 LLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 208
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 549 REIGRLSKLRLLDLTNCSKLKSIPPNV-------ERLNIERSNAS---LDELKHLSRLTT 598
R +G L +L L ++LK++PP + E+L++ +N + L L L T
Sbjct: 121 RGLGELQELYL----KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 599 LEIHIQGAKILPRGLFSKKLERYKILIGDEW 629
L + +P+G F L + L G+ W
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 549 REIGRLSKLRLLDLTNCSKLKSIPPNV-------ERLNIERSNAS---LDELKHLSRLTT 598
R +G L +L L ++LK++PP + E+L++ +N + L L L T
Sbjct: 121 RGLGELQELYL----KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 599 LEIHIQGAKILPRGLFSKKLERYKILIGDEW 629
L + +P+G F L + L G+ W
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 549 REIGRLSKLRLLDLTNCSKLKSIPPNV-------ERLNIERSNAS---LDELKHLSRLTT 598
R +G L +L L ++LK++PP + E+L++ +N + L L L T
Sbjct: 121 RGLGELQELYL----KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 599 LEIHIQGAKILPRGLFSKKLERYKILIGDEW 629
L + +P+G F L + L G+ W
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 549 REIGRLSKLRLLDLTNCSKLKSIPPNV-------ERLNIERSNASLDEL-----KHLSRL 596
R +G L +L L ++LK++PP + E+L++ +N L EL L L
Sbjct: 121 RGLGELQELYL----KGNELKTLPPGLLTPTPKLEKLSL--ANNDLTELPAGLLNGLENL 174
Query: 597 TTLEIHIQGAKILPRGLFSKKLERYKILIGDEW 629
TL + +P+G F L + L G+ W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 549 REIGRLSKLRLLDLTNCSKLKSIPPNV-------ERLNIERSNASLDEL-----KHLSRL 596
R +G L +L L ++LK++PP + E+L++ +N L EL L L
Sbjct: 121 RGLGELQELYL----KGNELKTLPPGLLTPTPKLEKLSL--ANNQLTELPAGLLNGLENL 174
Query: 597 TTLEIHIQGAKILPRGLFSKKLERYKILIGDEW 629
TL + +P+G F L + L G+ W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 549 REIGRLSKLRLLDLTNCSKLKSIPPNV-------ERLNIERSNASLDEL-----KHLSRL 596
R +G L +L L ++LK++PP + E+L++ +N L EL L L
Sbjct: 121 RGLGELQELYL----KGNELKTLPPGLLTPTPKLEKLSL--ANNQLTELPAGLLNGLENL 174
Query: 597 TTLEIHIQGAKILPRGLFSKKLERYKILIGDEW 629
TL + +P+G F L + L G+ W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 549 REIGRLSKLRLLDLTNCSKLKSIPP-------NVERLNIERSNASLDEL-----KHLSRL 596
R +G L +L L ++LK++PP +E+L++ +N +L EL L L
Sbjct: 121 RGLGELQELYL----KGNELKTLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENL 174
Query: 597 TTLEIHIQGAKILPRGLFSKKLERYKILIGDEW 629
TL + +P+G F L + L G+ W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 511 NLRTLCLDQSVLGDIAVIGELKQXXXXXXXXXXXXXXPREI-GRLSKLRLLDLTNCSKLK 569
N+R L L + L DI+ + EL P + +L+ L+ L L ++L+
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQ 122
Query: 570 SIPPNV--ERLNIERSNASLDELKHLSR--------LTTLEIHIQGAKILPRGLFSK 616
S+P V + N+ N + ++L+ L + LT L++ + LP G+F K
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 549 REIGRLSKLRLLDLTNCSKLKSIPP-------NVERLNIERSNASLDEL-----KHLSRL 596
R +G L +L L ++LK++PP +E+L++ +N L EL L L
Sbjct: 121 RGLGELQELYL----KGNELKTLPPGLLTPTPKLEKLSL--ANNQLTELPAGLLNGLENL 174
Query: 597 TTLEIHIQGAKILPRGLFSKKLERYKILIGDEW 629
TL + +P+G F L + L G+ W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 549 REIGRLSKLRLLDLTNCSKLKSIPP-------NVERLNIERSNASLDEL-----KHLSRL 596
R +G L +L L ++LK++PP +E+L++ +N L EL L L
Sbjct: 121 RGLGELQELYL----KGNELKTLPPGLLTPTPKLEKLSL--ANNQLTELPAGLLNGLENL 174
Query: 597 TTLEIHIQGAKILPRGLFSKKLERYKILIGDEW 629
TL + +P+G F L + L G+ W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 20/125 (16%)
Query: 510 VNLRTLCLDQSVLG--DIAVIGELKQXXXXXXXXXXXXXXPREI-GRLSKLRLLDLTNCS 566
+NL+ L L + LG + V L Q P + RL L+ L + C+
Sbjct: 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CN 122
Query: 567 KLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLE-RYKILI 625
KL +P +ER L+ LT L + K +P G F + + L
Sbjct: 123 KLTELPRGIER---------------LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167
Query: 626 GDEWD 630
G+ WD
Sbjct: 168 GNPWD 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,606,152
Number of Sequences: 62578
Number of extensions: 829670
Number of successful extensions: 2145
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2136
Number of HSP's gapped (non-prelim): 23
length of query: 840
length of database: 14,973,337
effective HSP length: 107
effective length of query: 733
effective length of database: 8,277,491
effective search space: 6067400903
effective search space used: 6067400903
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)