Query 003192
Match_columns 840
No_of_seqs 572 out of 4488
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 18:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.8E-85 1.7E-89 753.6 44.2 703 4-772 62-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.6E-66 1.9E-70 630.4 48.7 683 79-838 179-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.2E-43 9E-48 369.9 17.8 277 89-368 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.4E-26 3E-31 285.6 21.7 379 439-836 163-584 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.1E-26 2.3E-31 286.5 20.1 375 440-836 212-607 (968)
6 KOG0444 Cytoskeletal regulator 99.9 5.2E-26 1.1E-30 237.7 -5.3 358 437-837 4-376 (1255)
7 PLN03210 Resistant to P. syrin 99.9 8.5E-23 1.8E-27 251.5 21.6 359 438-837 556-944 (1153)
8 KOG4194 Membrane glycoprotein 99.9 2.5E-24 5.5E-29 224.1 5.5 326 438-789 100-436 (873)
9 KOG4194 Membrane glycoprotein 99.9 4.9E-24 1.1E-28 222.0 4.8 362 440-834 52-427 (873)
10 KOG0444 Cytoskeletal regulator 99.9 2.4E-23 5.3E-28 217.9 -3.1 309 438-782 53-376 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 6.2E-23 1.4E-27 204.9 -9.1 378 442-834 47-539 (565)
12 KOG0618 Serine/threonine phosp 99.8 2.1E-20 4.6E-25 205.7 4.9 360 461-836 44-489 (1081)
13 KOG0618 Serine/threonine phosp 99.7 3.6E-20 7.8E-25 203.9 -4.6 346 442-813 47-490 (1081)
14 KOG0472 Leucine-rich repeat pr 99.7 1E-20 2.2E-25 189.1 -8.7 331 442-812 139-541 (565)
15 PRK15387 E3 ubiquitin-protein 99.6 5.6E-15 1.2E-19 169.0 15.2 263 442-819 203-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 1.1E-14 2.3E-19 166.7 15.8 141 438-612 220-360 (788)
17 KOG0617 Ras suppressor protein 99.6 8.1E-17 1.8E-21 142.8 -5.1 158 438-613 31-192 (264)
18 PRK15370 E3 ubiquitin-protein 99.5 2E-14 4.3E-19 165.8 11.7 142 441-611 179-321 (754)
19 KOG0617 Ras suppressor protein 99.5 6.5E-16 1.4E-20 137.1 -3.9 141 435-578 51-195 (264)
20 PRK15370 E3 ubiquitin-protein 99.5 1.3E-13 2.7E-18 159.2 12.0 249 463-812 179-428 (754)
21 KOG4658 Apoptotic ATPase [Sign 99.4 5.9E-13 1.3E-17 156.1 7.1 318 451-839 512-845 (889)
22 PRK04841 transcriptional regul 99.3 9E-11 1.9E-15 144.6 24.1 293 82-415 12-332 (903)
23 KOG4237 Extracellular matrix p 99.3 1.2E-13 2.7E-18 138.9 -1.4 240 437-697 64-357 (498)
24 KOG4237 Extracellular matrix p 99.3 1.8E-13 4E-18 137.6 -3.7 275 450-751 56-355 (498)
25 TIGR03015 pepcterm_ATPase puta 99.3 7.1E-10 1.5E-14 115.5 22.5 184 103-289 41-242 (269)
26 cd00116 LRR_RI Leucine-rich re 99.2 7.3E-12 1.6E-16 134.4 4.9 100 467-566 3-119 (319)
27 PF01637 Arch_ATPase: Archaeal 99.2 8E-11 1.7E-15 120.0 11.4 195 86-284 1-233 (234)
28 PRK00411 cdc6 cell division co 99.2 2.3E-09 4.9E-14 118.4 21.1 292 82-394 28-357 (394)
29 PF05729 NACHT: NACHT domain 99.1 4.6E-10 1E-14 107.6 11.8 142 106-252 1-162 (166)
30 COG2909 MalT ATP-dependent tra 99.1 3.8E-09 8.2E-14 117.8 17.8 292 83-416 18-339 (894)
31 TIGR00635 ruvB Holliday juncti 99.0 2.7E-08 5.8E-13 105.6 22.4 273 83-395 3-289 (305)
32 PF14580 LRR_9: Leucine-rich r 99.0 2.4E-10 5.3E-15 107.5 5.1 76 488-564 20-97 (175)
33 PF14580 LRR_9: Leucine-rich r 99.0 4.6E-10 9.9E-15 105.6 6.8 120 441-563 20-148 (175)
34 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.8E-16 130.1 -4.6 168 442-613 77-253 (722)
35 TIGR02928 orc1/cdc6 family rep 99.0 4.4E-08 9.6E-13 107.0 21.9 293 83-394 14-349 (365)
36 PRK00080 ruvB Holliday junctio 99.0 1.2E-07 2.6E-12 101.2 24.5 277 79-395 20-310 (328)
37 cd00116 LRR_RI Leucine-rich re 99.0 6.7E-10 1.5E-14 119.2 7.1 157 440-607 23-206 (319)
38 KOG1259 Nischarin, modulator o 98.9 1.2E-10 2.7E-15 113.1 -0.9 133 437-573 281-416 (490)
39 COG2256 MGS1 ATPase related to 98.9 3.2E-08 6.8E-13 101.5 15.4 177 79-282 19-209 (436)
40 KOG0532 Leucine-rich repeat (L 98.9 8.8E-11 1.9E-15 124.0 -4.5 129 444-576 54-186 (722)
41 PRK13342 recombination factor 98.8 4.4E-08 9.5E-13 107.8 15.0 184 79-288 7-199 (413)
42 PRK06893 DNA replication initi 98.8 7.7E-08 1.7E-12 96.7 14.5 153 104-287 38-205 (229)
43 KOG1259 Nischarin, modulator o 98.8 6.5E-10 1.4E-14 108.2 -1.1 123 485-624 282-407 (490)
44 KOG4341 F-box protein containi 98.8 1.3E-10 2.8E-15 118.5 -6.3 120 713-835 318-438 (483)
45 PRK07003 DNA polymerase III su 98.7 1.1E-06 2.4E-11 99.0 20.0 184 79-286 11-222 (830)
46 PRK12402 replication factor C 98.7 4.7E-07 1E-11 97.8 16.6 202 79-284 10-225 (337)
47 KOG2028 ATPase related to the 98.7 3E-07 6.4E-12 92.4 13.5 180 79-280 133-331 (554)
48 PRK04195 replication factor C 98.7 1.9E-06 4.2E-11 96.8 21.2 186 79-289 9-206 (482)
49 KOG3207 Beta-tubulin folding c 98.7 1.1E-08 2.4E-13 105.2 2.8 92 502-607 113-210 (505)
50 PRK14961 DNA polymerase III su 98.6 1.1E-06 2.4E-11 95.0 17.9 195 79-283 11-218 (363)
51 KOG3207 Beta-tubulin folding c 98.6 7E-09 1.5E-13 106.6 -0.3 158 438-609 119-286 (505)
52 PLN03025 replication factor C 98.6 9.6E-07 2.1E-11 93.8 15.9 187 78-282 7-197 (319)
53 PRK14949 DNA polymerase III su 98.6 8E-07 1.7E-11 102.1 15.9 187 79-285 11-220 (944)
54 PRK00440 rfc replication facto 98.6 1.8E-06 3.9E-11 92.5 18.1 188 78-284 11-202 (319)
55 PRK05564 DNA polymerase III su 98.6 1.2E-06 2.7E-11 92.8 16.5 178 83-284 3-189 (313)
56 PLN03150 hypothetical protein; 98.6 1.3E-07 2.9E-12 109.3 9.8 86 489-574 420-509 (623)
57 TIGR03420 DnaA_homol_Hda DnaA 98.6 6.4E-07 1.4E-11 90.6 13.2 172 88-289 21-205 (226)
58 PRK14962 DNA polymerase III su 98.6 1.7E-06 3.8E-11 95.5 17.3 191 79-289 9-223 (472)
59 PF13173 AAA_14: AAA domain 98.6 1.3E-07 2.9E-12 85.7 7.1 120 105-244 2-126 (128)
60 TIGR02903 spore_lon_C ATP-depe 98.6 4.8E-06 1.1E-10 95.6 21.4 206 79-288 149-398 (615)
61 COG3899 Predicted ATPase [Gene 98.6 1.6E-06 3.4E-11 103.1 17.9 261 86-359 2-332 (849)
62 COG4886 Leucine-rich repeat (L 98.6 5.1E-08 1.1E-12 107.7 5.0 166 441-624 117-285 (394)
63 COG4886 Leucine-rich repeat (L 98.6 6.3E-08 1.4E-12 107.0 5.4 88 485-573 114-203 (394)
64 PRK06645 DNA polymerase III su 98.5 2.3E-06 4.9E-11 94.9 17.1 180 79-282 16-226 (507)
65 PRK14963 DNA polymerase III su 98.5 2.9E-06 6.3E-11 94.6 18.1 193 79-282 9-214 (504)
66 PRK14960 DNA polymerase III su 98.5 1.8E-06 3.9E-11 96.2 16.0 182 79-284 10-218 (702)
67 cd00009 AAA The AAA+ (ATPases 98.5 7.9E-07 1.7E-11 83.1 11.3 123 87-223 1-131 (151)
68 PRK12323 DNA polymerase III su 98.5 1.9E-06 4E-11 95.9 15.5 182 79-284 11-224 (700)
69 PF13401 AAA_22: AAA domain; P 98.5 3.9E-07 8.5E-12 83.2 8.3 115 105-221 4-125 (131)
70 PTZ00112 origin recognition co 98.5 3.6E-06 7.9E-11 95.3 17.2 204 83-289 754-986 (1164)
71 PRK14957 DNA polymerase III su 98.5 3.3E-06 7.2E-11 94.2 16.7 188 79-286 11-222 (546)
72 PRK14956 DNA polymerase III su 98.5 2.6E-06 5.7E-11 92.4 15.4 193 79-281 13-218 (484)
73 cd01128 rho_factor Transcripti 98.5 3.6E-07 7.7E-12 91.9 8.1 92 104-196 15-115 (249)
74 KOG4341 F-box protein containi 98.4 8.4E-09 1.8E-13 105.5 -4.4 144 685-837 267-415 (483)
75 PLN03150 hypothetical protein; 98.4 5.5E-07 1.2E-11 104.3 9.2 109 463-572 419-532 (623)
76 PRK09376 rho transcription ter 98.4 7.3E-07 1.6E-11 93.2 8.8 91 105-196 169-268 (416)
77 PRK08691 DNA polymerase III su 98.4 4E-06 8.6E-11 94.5 15.0 182 79-284 11-219 (709)
78 PRK14955 DNA polymerase III su 98.4 4.2E-06 9E-11 91.6 15.0 203 79-284 11-227 (397)
79 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.5E-12 71.3 3.8 56 488-543 2-60 (61)
80 PRK14964 DNA polymerase III su 98.4 8.2E-06 1.8E-10 89.7 16.7 184 79-282 8-214 (491)
81 TIGR02397 dnaX_nterm DNA polym 98.4 1.2E-05 2.5E-10 87.6 18.0 187 79-286 9-219 (355)
82 PF05496 RuvB_N: Holliday junc 98.4 1.7E-05 3.6E-10 76.5 16.6 181 78-289 18-225 (233)
83 PRK13341 recombination factor 98.4 4.6E-06 1E-10 96.6 15.4 176 79-280 23-212 (725)
84 PRK05896 DNA polymerase III su 98.4 7.7E-06 1.7E-10 91.3 16.5 198 79-286 11-222 (605)
85 PRK07940 DNA polymerase III su 98.4 7.5E-06 1.6E-10 88.3 15.8 173 83-285 4-213 (394)
86 PRK07471 DNA polymerase III su 98.4 1.3E-05 2.9E-10 85.7 17.6 200 79-285 14-238 (365)
87 COG1474 CDC6 Cdc6-related prot 98.4 3.5E-05 7.6E-10 82.3 20.7 200 85-285 18-238 (366)
88 COG3903 Predicted ATPase [Gene 98.4 8E-07 1.7E-11 92.2 7.8 237 104-352 13-258 (414)
89 PRK14958 DNA polymerase III su 98.4 5.8E-06 1.3E-10 92.4 15.4 185 79-283 11-218 (509)
90 PRK07994 DNA polymerase III su 98.4 8.5E-06 1.8E-10 92.4 16.5 197 79-285 11-220 (647)
91 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.4E-12 71.3 3.0 60 462-522 1-61 (61)
92 TIGR00678 holB DNA polymerase 98.4 8.2E-06 1.8E-10 79.6 14.5 160 95-281 3-187 (188)
93 PRK14951 DNA polymerase III su 98.4 1E-05 2.3E-10 91.5 16.9 199 79-284 11-224 (618)
94 PTZ00202 tuzin; Provisional 98.3 4.4E-06 9.5E-11 87.7 12.5 164 79-252 257-433 (550)
95 PRK09112 DNA polymerase III su 98.3 1.2E-05 2.6E-10 85.5 15.7 199 79-285 18-240 (351)
96 PRK08727 hypothetical protein; 98.3 1.1E-05 2.4E-10 81.3 14.7 161 92-282 28-201 (233)
97 PRK14970 DNA polymerase III su 98.3 2.7E-05 5.8E-10 84.9 18.3 184 79-282 12-206 (367)
98 PF13191 AAA_16: AAA ATPase do 98.3 1.9E-06 4.1E-11 84.1 8.4 48 85-132 1-51 (185)
99 PRK14959 DNA polymerase III su 98.3 1.6E-05 3.5E-10 89.3 15.8 201 79-289 11-225 (624)
100 PRK14954 DNA polymerase III su 98.3 2.2E-05 4.8E-10 89.3 17.0 199 79-280 11-223 (620)
101 KOG1909 Ran GTPase-activating 98.3 1.6E-07 3.5E-12 94.3 -0.4 244 484-752 27-308 (382)
102 PRK14969 DNA polymerase III su 98.2 2.5E-05 5.5E-10 88.0 16.3 183 79-281 11-216 (527)
103 PRK08451 DNA polymerase III su 98.2 3.6E-05 7.8E-10 85.5 17.1 187 79-285 9-218 (535)
104 TIGR01242 26Sp45 26S proteasom 98.2 1.6E-05 3.5E-10 86.2 14.3 173 83-279 121-328 (364)
105 PRK08084 DNA replication initi 98.2 2.2E-05 4.9E-10 79.2 14.1 167 90-286 30-210 (235)
106 KOG2120 SCF ubiquitin ligase, 98.2 6.8E-08 1.5E-12 94.5 -3.9 80 487-566 185-271 (419)
107 TIGR00767 rho transcription te 98.2 5.6E-06 1.2E-10 87.2 9.9 92 104-196 167-267 (415)
108 PF00308 Bac_DnaA: Bacterial d 98.2 1.7E-05 3.8E-10 78.8 13.0 162 105-285 34-208 (219)
109 PRK09111 DNA polymerase III su 98.2 3.6E-05 7.8E-10 87.4 16.9 200 79-285 19-233 (598)
110 PRK14971 DNA polymerase III su 98.2 5.3E-05 1.1E-09 86.8 17.9 184 79-283 12-220 (614)
111 PRK14950 DNA polymerase III su 98.2 5.2E-05 1.1E-09 87.1 17.9 198 79-285 11-221 (585)
112 PRK07133 DNA polymerase III su 98.2 6.3E-05 1.4E-09 85.9 17.6 182 79-284 13-218 (725)
113 PRK09087 hypothetical protein; 98.2 3.7E-05 7.9E-10 76.8 14.0 144 104-286 43-196 (226)
114 PF12799 LRR_4: Leucine Rich r 98.1 2.4E-06 5.2E-11 60.1 3.8 40 488-527 2-41 (44)
115 PRK07764 DNA polymerase III su 98.1 5.5E-05 1.2E-09 89.0 17.3 180 79-282 10-218 (824)
116 PRK14087 dnaA chromosomal repl 98.1 7E-05 1.5E-09 82.8 16.9 169 106-289 142-323 (450)
117 PF14516 AAA_35: AAA-like doma 98.1 0.00027 5.8E-09 75.3 20.7 201 82-292 9-246 (331)
118 PRK06305 DNA polymerase III su 98.1 8.4E-05 1.8E-09 82.2 17.4 182 79-281 12-218 (451)
119 PRK14952 DNA polymerase III su 98.1 6.7E-05 1.4E-09 84.8 16.8 200 79-288 8-223 (584)
120 PRK08903 DnaA regulatory inact 98.1 3.8E-05 8.1E-10 77.6 13.5 164 92-289 28-203 (227)
121 KOG0989 Replication factor C, 98.1 3.1E-05 6.8E-10 77.0 12.0 194 77-285 29-231 (346)
122 PHA02544 44 clamp loader, smal 98.1 2.5E-05 5.4E-10 83.4 12.6 151 78-251 15-171 (316)
123 PRK03992 proteasome-activating 98.1 3.7E-05 7.9E-10 83.8 13.8 172 84-279 131-337 (389)
124 PF05621 TniB: Bacterial TniB 98.1 9.1E-05 2E-09 75.0 15.2 195 90-284 43-260 (302)
125 PRK14953 DNA polymerase III su 98.1 0.00014 3E-09 81.1 18.1 184 79-286 11-221 (486)
126 TIGR03345 VI_ClpV1 type VI sec 98.1 3.9E-05 8.5E-10 91.4 14.5 186 79-279 182-390 (852)
127 TIGR02639 ClpA ATP-dependent C 98.1 3.3E-05 7.1E-10 91.4 13.8 160 79-252 177-357 (731)
128 KOG3665 ZYG-1-like serine/thre 98.1 1.8E-06 3.8E-11 99.6 2.9 126 439-565 121-260 (699)
129 PRK06647 DNA polymerase III su 98.1 0.00013 2.8E-09 82.6 17.3 196 79-284 11-219 (563)
130 KOG0531 Protein phosphatase 1, 98.0 6.4E-07 1.4E-11 99.1 -1.5 122 441-565 73-196 (414)
131 KOG0531 Protein phosphatase 1, 98.0 4.7E-07 1E-11 100.2 -2.6 135 460-612 70-204 (414)
132 PRK15386 type III secretion pr 98.0 2.4E-05 5.1E-10 83.1 10.2 63 485-573 50-112 (426)
133 TIGR02881 spore_V_K stage V sp 98.0 5.9E-05 1.3E-09 77.7 12.7 134 105-254 42-192 (261)
134 PRK05642 DNA replication initi 98.0 5.1E-05 1.1E-09 76.5 11.9 153 106-288 46-211 (234)
135 PRK14948 DNA polymerase III su 98.0 0.00021 4.5E-09 82.0 18.1 199 79-285 11-222 (620)
136 KOG2982 Uncharacterized conser 98.0 1.7E-06 3.8E-11 84.8 0.6 80 485-564 69-155 (418)
137 KOG1859 Leucine-rich repeat pr 98.0 1.9E-07 4.1E-12 101.9 -6.9 123 439-566 163-290 (1096)
138 PRK11331 5-methylcytosine-spec 98.0 3.5E-05 7.5E-10 82.8 10.2 108 84-196 175-284 (459)
139 PRK14965 DNA polymerase III su 98.0 0.00013 2.7E-09 83.5 15.1 197 79-285 11-221 (576)
140 KOG4579 Leucine-rich repeat (L 97.9 9.7E-07 2.1E-11 76.5 -1.6 109 442-551 29-142 (177)
141 CHL00095 clpC Clp protease ATP 97.9 4.9E-05 1.1E-09 91.1 12.0 158 82-252 177-353 (821)
142 PRK05563 DNA polymerase III su 97.9 0.00031 6.7E-09 79.9 17.8 194 79-282 11-217 (559)
143 PRK15386 type III secretion pr 97.9 2.1E-05 4.6E-10 83.4 7.7 128 460-624 50-185 (426)
144 COG2255 RuvB Holliday junction 97.9 0.001 2.3E-08 65.7 18.6 181 79-290 21-228 (332)
145 PRK07399 DNA polymerase III su 97.9 0.00047 1E-08 72.4 17.4 196 83-285 3-221 (314)
146 PRK00149 dnaA chromosomal repl 97.9 0.00083 1.8E-08 75.1 20.5 194 92-304 133-349 (450)
147 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.3E-10 56.1 4.0 37 511-547 2-39 (44)
148 CHL00181 cbbX CbbX; Provisiona 97.9 0.00027 5.9E-09 73.3 14.9 133 106-254 60-210 (287)
149 TIGR02880 cbbX_cfxQ probable R 97.9 0.00026 5.6E-09 73.6 14.8 131 107-253 60-208 (284)
150 TIGR00362 DnaA chromosomal rep 97.8 0.0013 2.9E-08 72.5 20.0 180 106-304 137-337 (405)
151 KOG1909 Ran GTPase-activating 97.8 7.4E-06 1.6E-10 82.6 1.7 114 483-607 88-226 (382)
152 KOG3665 ZYG-1-like serine/thre 97.8 9.1E-06 2E-10 93.8 2.7 138 461-607 121-263 (699)
153 TIGR03689 pup_AAA proteasome A 97.8 0.00022 4.8E-09 79.0 13.0 159 82-253 180-378 (512)
154 KOG1859 Leucine-rich repeat pr 97.8 9.4E-07 2E-11 96.6 -5.3 153 439-610 108-270 (1096)
155 PRK06620 hypothetical protein; 97.8 0.00014 3E-09 72.0 10.3 137 106-284 45-188 (214)
156 PRK10865 protein disaggregatio 97.8 0.00018 3.8E-09 86.2 13.1 52 80-131 174-225 (857)
157 PTZ00361 26 proteosome regulat 97.8 0.00064 1.4E-08 74.2 16.2 173 83-279 182-389 (438)
158 KOG2120 SCF ubiquitin ligase, 97.8 1.9E-06 4.1E-11 84.6 -3.2 142 659-810 233-374 (419)
159 COG1373 Predicted ATPase (AAA+ 97.8 0.00033 7.2E-09 76.3 13.5 137 87-248 20-162 (398)
160 PRK05707 DNA polymerase III su 97.7 0.00083 1.8E-08 71.0 16.0 167 105-285 22-203 (328)
161 PTZ00454 26S protease regulato 97.7 0.00059 1.3E-08 74.0 15.2 173 83-279 144-351 (398)
162 TIGR03346 chaperone_ClpB ATP-d 97.7 0.0002 4.4E-09 86.1 12.9 158 80-252 169-348 (852)
163 KOG2227 Pre-initiation complex 97.7 0.0022 4.9E-08 67.8 18.6 198 80-279 146-362 (529)
164 PRK14088 dnaA chromosomal repl 97.7 0.001 2.2E-08 73.6 17.0 193 93-304 117-332 (440)
165 PRK11034 clpA ATP-dependent Cl 97.7 0.00011 2.3E-09 85.9 9.5 158 82-252 184-361 (758)
166 PRK14086 dnaA chromosomal repl 97.7 0.0017 3.7E-08 73.0 18.3 160 106-284 315-487 (617)
167 PRK10536 hypothetical protein; 97.7 0.0003 6.5E-09 70.0 11.0 57 81-139 52-108 (262)
168 KOG2543 Origin recognition com 97.7 0.00032 6.8E-09 72.1 11.1 163 84-252 6-192 (438)
169 KOG1644 U2-associated snRNP A' 97.7 9.4E-05 2E-09 69.1 6.6 82 483-564 60-149 (233)
170 PRK08769 DNA polymerase III su 97.7 0.0016 3.4E-08 68.2 16.1 186 90-285 10-208 (319)
171 KOG2982 Uncharacterized conser 97.6 1.1E-05 2.5E-10 79.2 0.0 207 488-758 46-265 (418)
172 TIGR00602 rad24 checkpoint pro 97.6 0.00026 5.6E-09 80.6 10.8 54 77-130 77-135 (637)
173 smart00382 AAA ATPases associa 97.6 0.0002 4.4E-09 66.1 8.3 90 106-198 3-92 (148)
174 KOG4579 Leucine-rich repeat (L 97.6 1.2E-05 2.7E-10 69.9 -0.1 89 483-572 49-139 (177)
175 KOG1644 U2-associated snRNP A' 97.6 8.2E-05 1.8E-09 69.5 5.2 102 440-542 42-150 (233)
176 PRK08058 DNA polymerase III su 97.6 0.0011 2.4E-08 70.5 14.4 161 85-252 6-181 (329)
177 PF05673 DUF815: Protein of un 97.6 0.0024 5.3E-08 62.8 15.2 52 81-132 24-79 (249)
178 PF00004 AAA: ATPase family as 97.6 0.00015 3.2E-09 66.1 6.5 69 108-196 1-70 (132)
179 TIGR01241 FtsH_fam ATP-depende 97.5 0.0017 3.6E-08 73.7 15.7 181 81-285 52-267 (495)
180 COG3267 ExeA Type II secretory 97.5 0.0042 9.1E-08 60.9 15.8 182 102-287 48-247 (269)
181 PRK12422 chromosomal replicati 97.5 0.0016 3.5E-08 71.8 14.7 153 106-279 142-307 (445)
182 COG5238 RNA1 Ran GTPase-activa 97.5 0.00012 2.7E-09 71.2 4.9 256 483-758 26-318 (388)
183 PRK08118 topology modulation p 97.5 7.6E-05 1.7E-09 70.8 3.5 35 106-140 2-37 (167)
184 COG1222 RPT1 ATP-dependent 26S 97.5 0.0046 1E-07 63.4 16.0 198 83-304 150-392 (406)
185 KOG0991 Replication factor C, 97.5 0.00026 5.6E-09 67.4 6.7 107 76-196 19-125 (333)
186 CHL00176 ftsH cell division pr 97.5 0.0018 3.9E-08 74.5 14.9 170 84-277 183-386 (638)
187 PRK08116 hypothetical protein; 97.5 0.00093 2E-08 68.7 11.3 102 106-222 115-221 (268)
188 PRK12608 transcription termina 97.4 0.0012 2.7E-08 69.4 11.7 102 93-195 120-231 (380)
189 PRK06090 DNA polymerase III su 97.4 0.0091 2E-07 62.5 18.0 176 91-285 10-201 (319)
190 PF13177 DNA_pol3_delta2: DNA 97.4 0.0019 4.1E-08 60.9 11.7 136 88-240 1-161 (162)
191 COG0593 DnaA ATPase involved i 97.4 0.0043 9.3E-08 66.3 15.3 137 104-257 112-261 (408)
192 PRK06871 DNA polymerase III su 97.4 0.0066 1.4E-07 63.7 16.2 176 92-282 10-200 (325)
193 PRK08181 transposase; Validate 97.3 0.0016 3.4E-08 66.5 10.9 105 98-222 101-209 (269)
194 COG2812 DnaX DNA polymerase II 97.3 0.0021 4.5E-08 70.9 12.4 191 79-279 11-214 (515)
195 PRK07261 topology modulation p 97.3 0.0011 2.3E-08 63.3 8.7 34 107-140 2-36 (171)
196 PRK07993 DNA polymerase III su 97.3 0.0077 1.7E-07 63.9 15.7 177 91-283 9-202 (334)
197 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0034 7.4E-08 69.8 12.9 153 105-279 259-429 (489)
198 COG0466 Lon ATP-dependent Lon 97.2 0.0046 1E-07 69.1 13.5 156 86-253 325-508 (782)
199 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0081 1.7E-07 61.8 14.3 56 91-153 9-64 (262)
200 PF04665 Pox_A32: Poxvirus A32 97.2 0.001 2.2E-08 66.0 7.0 36 106-143 14-49 (241)
201 KOG1947 Leucine rich repeat pr 97.1 9.2E-05 2E-09 84.4 -0.3 119 659-781 187-308 (482)
202 KOG0731 AAA+-type ATPase conta 97.1 0.008 1.7E-07 68.6 14.5 179 83-284 310-523 (774)
203 TIGR00763 lon ATP-dependent pr 97.1 0.0073 1.6E-07 72.2 15.2 46 86-131 322-373 (775)
204 PRK06964 DNA polymerase III su 97.1 0.02 4.3E-07 60.6 16.4 103 172-285 116-225 (342)
205 PRK10787 DNA-binding ATP-depen 97.1 0.0043 9.3E-08 73.4 12.6 157 85-253 323-506 (784)
206 PHA00729 NTP-binding motif con 97.1 0.0028 6.1E-08 62.1 9.0 36 95-130 7-42 (226)
207 KOG2739 Leucine-rich acidic nu 97.1 0.0003 6.4E-09 68.9 2.2 82 483-564 61-152 (260)
208 KOG2004 Mitochondrial ATP-depe 97.0 0.0023 5E-08 71.0 9.0 101 84-196 411-517 (906)
209 KOG0733 Nuclear AAA ATPase (VC 97.0 0.016 3.5E-07 63.4 15.0 93 83-195 189-293 (802)
210 KOG0741 AAA+-type ATPase [Post 97.0 0.011 2.3E-07 63.5 13.4 145 104-275 537-704 (744)
211 KOG2123 Uncharacterized conser 97.0 6.1E-05 1.3E-09 73.6 -3.2 105 485-600 17-123 (388)
212 TIGR02902 spore_lonB ATP-depen 97.0 0.0046 1E-07 70.2 11.1 52 79-130 60-111 (531)
213 PRK12377 putative replication 97.0 0.0053 1.1E-07 61.9 10.3 73 105-194 101-173 (248)
214 KOG1947 Leucine rich repeat pr 97.0 0.00013 2.8E-09 83.3 -1.5 167 659-838 268-442 (482)
215 PRK06835 DNA replication prote 96.9 0.0075 1.6E-07 63.6 11.4 37 105-143 183-219 (329)
216 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0023 5E-08 76.6 8.3 103 85-196 567-680 (852)
217 PF13207 AAA_17: AAA domain; P 96.9 0.00083 1.8E-08 60.1 3.6 24 107-130 1-24 (121)
218 PRK06526 transposase; Provisio 96.9 0.0011 2.3E-08 67.4 4.7 73 105-195 98-170 (254)
219 KOG1969 DNA replication checkp 96.9 0.0026 5.7E-08 70.8 7.8 76 103-196 324-399 (877)
220 PF07728 AAA_5: AAA domain (dy 96.9 0.00084 1.8E-08 61.8 3.5 43 108-155 2-44 (139)
221 PF02562 PhoH: PhoH-like prote 96.8 0.0011 2.3E-08 64.3 4.1 51 89-141 5-55 (205)
222 TIGR02237 recomb_radB DNA repa 96.8 0.005 1.1E-07 61.2 9.1 47 105-154 12-58 (209)
223 TIGR02639 ClpA ATP-dependent C 96.8 0.0042 9.2E-08 73.7 9.9 102 85-196 455-565 (731)
224 PF10443 RNA12: RNA12 protein; 96.8 0.034 7.3E-07 59.4 15.4 196 89-294 1-288 (431)
225 TIGR01243 CDC48 AAA family ATP 96.8 0.0072 1.6E-07 72.1 11.9 175 83-281 177-383 (733)
226 COG0542 clpA ATP-binding subun 96.8 0.0019 4.1E-08 74.1 6.5 160 81-252 167-345 (786)
227 COG1223 Predicted ATPase (AAA+ 96.8 0.015 3.3E-07 56.7 11.5 172 83-278 120-318 (368)
228 TIGR01243 CDC48 AAA family ATP 96.8 0.014 3.1E-07 69.6 14.0 173 83-279 452-657 (733)
229 KOG0730 AAA+-type ATPase [Post 96.8 0.024 5.3E-07 62.9 14.4 154 81-254 431-616 (693)
230 PRK09183 transposase/IS protei 96.8 0.0024 5.1E-08 65.4 6.4 27 105-131 102-128 (259)
231 KOG0734 AAA+-type ATPase conta 96.8 0.0044 9.5E-08 66.5 8.2 93 83-195 303-407 (752)
232 smart00763 AAA_PrkA PrkA AAA d 96.8 0.002 4.4E-08 67.6 5.7 47 85-131 52-104 (361)
233 PRK10865 protein disaggregatio 96.7 0.0046 1E-07 74.3 9.2 58 85-144 569-635 (857)
234 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0039 8.6E-08 75.2 8.7 105 85-196 566-679 (852)
235 KOG0739 AAA+-type ATPase [Post 96.7 0.018 4E-07 57.3 11.5 93 83-195 132-236 (439)
236 COG2884 FtsE Predicted ATPase 96.7 0.0035 7.6E-08 58.3 6.2 29 104-132 27-55 (223)
237 PLN00020 ribulose bisphosphate 96.7 0.0041 8.8E-08 64.8 7.4 29 104-132 147-175 (413)
238 PRK04132 replication factor C 96.7 0.03 6.5E-07 66.0 15.5 153 113-284 574-730 (846)
239 COG1484 DnaC DNA replication p 96.7 0.0088 1.9E-07 60.8 9.7 83 94-195 96-178 (254)
240 KOG2739 Leucine-rich acidic nu 96.7 0.00095 2E-08 65.4 2.5 112 437-549 40-160 (260)
241 CHL00095 clpC Clp protease ATP 96.7 0.0064 1.4E-07 73.2 9.9 106 84-196 509-623 (821)
242 COG0470 HolB ATPase involved i 96.7 0.016 3.4E-07 62.2 12.0 138 86-239 3-167 (325)
243 PRK11034 clpA ATP-dependent Cl 96.7 0.0047 1E-07 72.5 8.3 102 85-196 459-569 (758)
244 PF00448 SRP54: SRP54-type pro 96.6 0.0098 2.1E-07 57.9 9.1 86 106-193 2-92 (196)
245 KOG2123 Uncharacterized conser 96.6 0.00016 3.5E-09 70.7 -3.3 98 460-561 17-123 (388)
246 PRK08939 primosomal protein Dn 96.6 0.011 2.3E-07 62.0 9.8 90 88-195 135-228 (306)
247 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0079 1.7E-07 61.0 8.7 55 105-160 19-77 (235)
248 KOG0743 AAA+-type ATPase [Post 96.6 0.23 5.1E-06 53.1 19.4 149 106-289 236-413 (457)
249 COG1419 FlhF Flagellar GTP-bin 96.6 0.022 4.8E-07 60.2 11.9 98 93-193 187-290 (407)
250 PRK14722 flhF flagellar biosyn 96.6 0.012 2.6E-07 62.8 10.1 88 105-194 137-225 (374)
251 PRK07952 DNA replication prote 96.6 0.016 3.6E-07 58.2 10.6 91 90-196 82-174 (244)
252 PRK05541 adenylylsulfate kinas 96.5 0.0073 1.6E-07 58.1 7.6 36 104-141 6-41 (176)
253 PRK06696 uridine kinase; Valid 96.5 0.0043 9.4E-08 62.2 6.0 44 88-131 2-48 (223)
254 cd01393 recA_like RecA is a b 96.5 0.016 3.6E-07 58.3 10.3 49 105-153 19-71 (226)
255 cd01133 F1-ATPase_beta F1 ATP 96.5 0.019 4.2E-07 58.2 10.1 91 104-196 68-175 (274)
256 TIGR02012 tigrfam_recA protein 96.4 0.015 3.3E-07 60.7 9.3 84 104-194 54-143 (321)
257 cd01120 RecA-like_NTPases RecA 96.4 0.019 4E-07 54.3 9.5 39 107-147 1-39 (165)
258 PF08423 Rad51: Rad51; InterP 96.4 0.029 6.2E-07 57.3 11.2 57 105-162 38-98 (256)
259 PF01695 IstB_IS21: IstB-like 96.4 0.0063 1.4E-07 58.3 6.0 74 105-196 47-120 (178)
260 TIGR03499 FlhF flagellar biosy 96.4 0.017 3.7E-07 60.0 9.6 87 105-193 194-281 (282)
261 KOG0735 AAA+-type ATPase [Post 96.4 0.016 3.4E-07 64.6 9.4 160 106-286 432-617 (952)
262 PRK09270 nucleoside triphospha 96.4 0.02 4.4E-07 57.6 9.8 30 103-132 31-60 (229)
263 COG1618 Predicted nucleotide k 96.4 0.0047 1E-07 55.9 4.5 31 105-136 5-35 (179)
264 PRK11889 flhF flagellar biosyn 96.4 0.037 8.1E-07 58.7 11.8 89 104-194 240-330 (436)
265 PHA02244 ATPase-like protein 96.4 0.025 5.4E-07 59.6 10.5 36 93-130 109-144 (383)
266 KOG0733 Nuclear AAA ATPase (VC 96.3 0.052 1.1E-06 59.6 13.0 129 105-253 545-692 (802)
267 COG1875 NYN ribonuclease and A 96.3 0.0097 2.1E-07 61.1 7.1 40 86-125 226-265 (436)
268 PRK08699 DNA polymerase III su 96.3 0.059 1.3E-06 57.0 13.4 147 105-252 21-184 (325)
269 PRK06921 hypothetical protein; 96.3 0.019 4.2E-07 58.9 9.3 71 104-193 116-186 (266)
270 KOG0736 Peroxisome assembly fa 96.3 0.036 7.7E-07 62.5 11.7 95 82-196 670-776 (953)
271 TIGR00554 panK_bact pantothena 96.2 0.025 5.4E-07 58.4 9.7 42 89-130 46-87 (290)
272 cd00983 recA RecA is a bacter 96.2 0.021 4.5E-07 59.7 9.1 83 105-194 55-143 (325)
273 KOG2035 Replication factor C, 96.2 0.17 3.7E-06 50.3 14.6 213 79-306 8-260 (351)
274 KOG2228 Origin recognition com 96.2 0.072 1.6E-06 54.4 12.2 168 83-253 23-219 (408)
275 PRK09361 radB DNA repair and r 96.2 0.032 6.8E-07 56.2 10.1 45 105-152 23-67 (225)
276 PF07693 KAP_NTPase: KAP famil 96.2 0.16 3.5E-06 54.3 16.3 41 92-132 4-47 (325)
277 TIGR02238 recomb_DMC1 meiotic 96.2 0.027 5.8E-07 59.2 9.7 58 105-163 96-157 (313)
278 cd02025 PanK Pantothenate kina 96.2 0.026 5.6E-07 56.2 9.1 25 107-131 1-25 (220)
279 KOG0729 26S proteasome regulat 96.2 0.034 7.3E-07 54.4 9.4 92 83-194 176-280 (435)
280 PRK06547 hypothetical protein; 96.1 0.0079 1.7E-07 57.2 5.2 36 95-130 5-40 (172)
281 PRK15455 PrkA family serine pr 96.1 0.0078 1.7E-07 66.6 5.6 49 83-131 75-129 (644)
282 PRK04296 thymidine kinase; Pro 96.1 0.0063 1.4E-07 59.2 4.4 111 106-224 3-118 (190)
283 PRK08533 flagellar accessory p 96.1 0.037 8E-07 55.6 10.1 48 105-156 24-71 (230)
284 PRK12727 flagellar biosynthesi 96.1 0.027 5.8E-07 62.2 9.6 89 104-194 349-438 (559)
285 PRK09354 recA recombinase A; P 96.1 0.027 5.9E-07 59.3 9.4 83 105-194 60-148 (349)
286 TIGR02858 spore_III_AA stage I 96.1 0.024 5.1E-07 58.1 8.7 121 94-224 99-231 (270)
287 COG0542 clpA ATP-binding subun 96.1 0.018 3.9E-07 66.4 8.6 102 85-196 492-605 (786)
288 PRK07132 DNA polymerase III su 96.1 0.18 4E-06 52.4 15.3 167 93-284 5-184 (299)
289 PRK10733 hflB ATP-dependent me 96.0 0.055 1.2E-06 63.2 12.3 128 106-253 186-335 (644)
290 COG0563 Adk Adenylate kinase a 96.0 0.014 3.1E-07 55.7 6.2 25 107-131 2-26 (178)
291 COG1428 Deoxynucleoside kinase 96.0 0.014 3E-07 55.8 5.7 49 105-158 4-52 (216)
292 KOG0744 AAA+-type ATPase [Post 95.9 0.023 5.1E-07 57.3 7.4 28 105-132 177-204 (423)
293 KOG1514 Origin recognition com 95.9 0.42 9.1E-06 53.9 17.6 200 82-284 394-620 (767)
294 PRK07667 uridine kinase; Provi 95.9 0.012 2.5E-07 57.5 5.3 38 94-131 4-43 (193)
295 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.019 4.2E-07 55.6 6.8 24 107-130 1-24 (183)
296 PRK12726 flagellar biosynthesi 95.9 0.055 1.2E-06 57.3 10.3 89 104-194 205-295 (407)
297 PF13238 AAA_18: AAA domain; P 95.9 0.0069 1.5E-07 54.7 3.4 22 108-129 1-22 (129)
298 cd01394 radB RadB. The archaea 95.9 0.037 8E-07 55.4 8.9 42 105-148 19-60 (218)
299 PRK05439 pantothenate kinase; 95.9 0.056 1.2E-06 56.2 10.3 28 103-130 84-111 (311)
300 PLN03187 meiotic recombination 95.9 0.051 1.1E-06 57.5 10.2 58 105-163 126-187 (344)
301 PF00485 PRK: Phosphoribulokin 95.9 0.0076 1.7E-07 59.0 3.8 26 107-132 1-26 (194)
302 PRK13531 regulatory ATPase Rav 95.8 0.013 2.8E-07 64.0 5.7 50 85-136 21-70 (498)
303 cd01121 Sms Sms (bacterial rad 95.8 0.034 7.3E-07 59.9 8.8 85 105-194 82-168 (372)
304 cd03115 SRP The signal recogni 95.8 0.038 8.2E-07 52.9 8.5 26 107-132 2-27 (173)
305 COG0194 Gmk Guanylate kinase [ 95.8 0.04 8.6E-07 51.7 8.0 25 105-129 4-28 (191)
306 PRK12724 flagellar biosynthesi 95.8 0.032 7E-07 60.0 8.5 84 105-192 223-307 (432)
307 cd02019 NK Nucleoside/nucleoti 95.8 0.0086 1.9E-07 47.2 3.2 23 107-129 1-23 (69)
308 TIGR02236 recomb_radA DNA repa 95.8 0.056 1.2E-06 57.3 10.4 57 105-162 95-155 (310)
309 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.071 1.5E-06 54.0 10.6 49 104-156 20-68 (237)
310 PRK04301 radA DNA repair and r 95.8 0.057 1.2E-06 57.4 10.2 57 105-162 102-162 (317)
311 PRK14974 cell division protein 95.7 0.11 2.3E-06 55.0 11.8 57 105-163 140-197 (336)
312 PF10236 DAP3: Mitochondrial r 95.7 0.66 1.4E-05 48.9 17.8 49 234-282 258-306 (309)
313 PF12775 AAA_7: P-loop contain 95.7 0.0055 1.2E-07 63.0 2.1 89 94-195 23-111 (272)
314 PTZ00301 uridine kinase; Provi 95.7 0.01 2.2E-07 58.3 3.9 26 105-130 3-28 (210)
315 PF00006 ATP-synt_ab: ATP synt 95.7 0.036 7.8E-07 54.5 7.6 96 96-195 5-116 (215)
316 PF03308 ArgK: ArgK protein; 95.6 0.018 4E-07 57.1 5.4 59 92-150 14-74 (266)
317 TIGR02239 recomb_RAD51 DNA rep 95.6 0.052 1.1E-06 57.2 9.2 57 105-162 96-156 (316)
318 COG4608 AppF ABC-type oligopep 95.6 0.052 1.1E-06 54.3 8.5 119 104-226 38-174 (268)
319 PRK08233 hypothetical protein; 95.6 0.0099 2.2E-07 57.5 3.6 26 105-130 3-28 (182)
320 COG0572 Udk Uridine kinase [Nu 95.6 0.012 2.5E-07 57.1 3.9 29 104-132 7-35 (218)
321 PRK05480 uridine/cytidine kina 95.6 0.012 2.5E-07 58.5 4.1 26 104-129 5-30 (209)
322 KOG0738 AAA+-type ATPase [Post 95.6 0.11 2.4E-06 54.1 10.9 28 105-132 245-272 (491)
323 TIGR00235 udk uridine kinase. 95.6 0.011 2.5E-07 58.4 3.9 28 103-130 4-31 (207)
324 PRK05703 flhF flagellar biosyn 95.6 0.048 1E-06 59.9 9.1 86 105-193 221-308 (424)
325 PLN03186 DNA repair protein RA 95.6 0.063 1.4E-06 57.0 9.6 58 105-163 123-184 (342)
326 PF06309 Torsin: Torsin; Inte 95.6 0.15 3.2E-06 44.9 10.1 44 86-129 27-77 (127)
327 COG0464 SpoVK ATPases of the A 95.6 0.16 3.5E-06 57.8 13.6 130 104-253 275-423 (494)
328 PRK06217 hypothetical protein; 95.6 0.048 1E-06 52.8 8.0 34 107-141 3-38 (183)
329 PTZ00035 Rad51 protein; Provis 95.5 0.082 1.8E-06 56.2 10.3 57 105-162 118-178 (337)
330 COG0468 RecA RecA/RadA recombi 95.5 0.086 1.9E-06 53.8 9.9 88 104-194 59-151 (279)
331 PF01583 APS_kinase: Adenylyls 95.5 0.024 5.1E-07 52.4 5.4 35 105-141 2-36 (156)
332 PRK10463 hydrogenase nickel in 95.5 0.057 1.2E-06 55.3 8.7 96 94-195 93-195 (290)
333 PRK00771 signal recognition pa 95.5 0.074 1.6E-06 58.3 10.1 58 104-163 94-152 (437)
334 COG1066 Sms Predicted ATP-depe 95.5 0.077 1.7E-06 55.9 9.5 85 105-195 93-179 (456)
335 PRK03839 putative kinase; Prov 95.5 0.012 2.7E-07 56.8 3.7 24 107-130 2-25 (180)
336 cd03247 ABCC_cytochrome_bd The 95.5 0.031 6.7E-07 53.8 6.4 26 105-130 28-53 (178)
337 COG1102 Cmk Cytidylate kinase 95.5 0.022 4.7E-07 51.7 4.8 45 107-164 2-46 (179)
338 cd01135 V_A-ATPase_B V/A-type 95.5 0.071 1.5E-06 54.0 9.1 93 104-196 68-178 (276)
339 PRK14721 flhF flagellar biosyn 95.5 0.1 2.2E-06 56.8 10.8 88 104-193 190-278 (420)
340 PF00560 LRR_1: Leucine Rich R 95.4 0.0042 9.1E-08 36.2 0.1 19 534-552 2-20 (22)
341 cd01124 KaiC KaiC is a circadi 95.4 0.056 1.2E-06 52.5 8.2 44 108-155 2-45 (187)
342 KOG3347 Predicted nucleotide k 95.4 0.014 3.1E-07 51.9 3.4 38 105-149 7-44 (176)
343 COG1703 ArgK Putative periplas 95.4 0.029 6.2E-07 56.5 5.9 61 94-154 38-100 (323)
344 PRK06067 flagellar accessory p 95.4 0.092 2E-06 53.1 9.9 49 104-156 24-72 (234)
345 cd03214 ABC_Iron-Siderophores_ 95.4 0.06 1.3E-06 51.9 8.2 117 104-225 24-161 (180)
346 PF00910 RNA_helicase: RNA hel 95.4 0.012 2.6E-07 51.1 2.9 25 108-132 1-25 (107)
347 PRK00889 adenylylsulfate kinas 95.4 0.055 1.2E-06 51.9 7.9 28 104-131 3-30 (175)
348 PRK06762 hypothetical protein; 95.4 0.015 3.2E-07 55.4 3.8 24 106-129 3-26 (166)
349 TIGR00064 ftsY signal recognit 95.4 0.098 2.1E-06 53.9 10.0 40 103-144 70-109 (272)
350 PF13671 AAA_33: AAA domain; P 95.4 0.014 3E-07 53.9 3.5 24 107-130 1-24 (143)
351 TIGR01360 aden_kin_iso1 adenyl 95.4 0.015 3.2E-07 56.6 3.8 26 104-129 2-27 (188)
352 COG2607 Predicted ATPase (AAA+ 95.4 0.096 2.1E-06 50.9 8.9 112 85-222 61-183 (287)
353 PRK06995 flhF flagellar biosyn 95.4 0.089 1.9E-06 58.2 10.1 59 105-163 256-315 (484)
354 PRK12723 flagellar biosynthesi 95.4 0.079 1.7E-06 57.1 9.5 88 105-194 174-264 (388)
355 PRK14723 flhF flagellar biosyn 95.3 0.12 2.5E-06 60.2 11.3 88 105-194 185-273 (767)
356 PRK13765 ATP-dependent proteas 95.3 0.035 7.5E-07 63.8 7.1 79 81-163 28-106 (637)
357 TIGR00390 hslU ATP-dependent p 95.3 0.05 1.1E-06 58.3 7.7 74 85-160 13-104 (441)
358 PRK04328 hypothetical protein; 95.3 0.097 2.1E-06 53.3 9.7 53 104-161 22-74 (249)
359 PF00560 LRR_1: Leucine Rich R 95.3 0.0067 1.4E-07 35.4 0.7 21 488-508 1-21 (22)
360 PRK00625 shikimate kinase; Pro 95.3 0.015 3.2E-07 55.4 3.4 24 107-130 2-25 (173)
361 CHL00206 ycf2 Ycf2; Provisiona 95.3 0.12 2.7E-06 64.7 11.7 29 104-132 1629-1657(2281)
362 PF03205 MobB: Molybdopterin g 95.3 0.03 6.5E-07 51.2 5.2 39 106-145 1-39 (140)
363 PRK04040 adenylate kinase; Pro 95.3 0.016 3.5E-07 56.0 3.6 25 106-130 3-27 (188)
364 cd01131 PilT Pilus retraction 95.3 0.025 5.4E-07 55.4 5.0 108 106-224 2-111 (198)
365 PRK12597 F0F1 ATP synthase sub 95.3 0.077 1.7E-06 58.3 9.1 91 104-195 142-248 (461)
366 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.067 1.4E-06 53.4 7.9 24 105-128 30-53 (254)
367 PF13481 AAA_25: AAA domain; P 95.2 0.077 1.7E-06 51.8 8.4 50 106-157 33-90 (193)
368 KOG0735 AAA+-type ATPase [Post 95.2 0.58 1.3E-05 52.8 15.5 95 82-196 665-772 (952)
369 COG4618 ArpD ABC-type protease 95.2 0.058 1.2E-06 58.2 7.5 25 105-129 362-386 (580)
370 COG1224 TIP49 DNA helicase TIP 95.1 0.041 8.8E-07 56.5 6.0 55 82-136 37-96 (450)
371 PRK10867 signal recognition pa 95.1 0.12 2.5E-06 56.7 10.0 28 105-132 100-127 (433)
372 PF03215 Rad17: Rad17 cell cyc 95.1 0.035 7.5E-07 62.3 6.1 61 78-142 13-78 (519)
373 PRK08972 fliI flagellum-specif 95.1 0.061 1.3E-06 58.3 7.6 89 104-196 161-264 (444)
374 PF07726 AAA_3: ATPase family 95.1 0.02 4.3E-07 50.4 3.2 25 108-132 2-26 (131)
375 cd00544 CobU Adenosylcobinamid 95.1 0.11 2.4E-06 49.2 8.5 81 108-194 2-83 (169)
376 COG4088 Predicted nucleotide k 95.0 0.018 3.9E-07 54.3 3.0 27 106-132 2-28 (261)
377 PF07724 AAA_2: AAA domain (Cd 95.0 0.02 4.3E-07 54.4 3.5 43 105-148 3-45 (171)
378 TIGR03305 alt_F1F0_F1_bet alte 95.0 0.077 1.7E-06 57.9 8.3 91 105-196 138-244 (449)
379 PTZ00088 adenylate kinase 1; P 95.0 0.029 6.4E-07 56.0 4.8 24 107-130 8-31 (229)
380 COG1936 Predicted nucleotide k 95.0 0.018 4E-07 53.0 2.9 21 106-126 1-21 (180)
381 COG3640 CooC CO dehydrogenase 95.0 0.05 1.1E-06 52.8 5.9 42 107-149 2-43 (255)
382 PRK00131 aroK shikimate kinase 95.0 0.024 5.2E-07 54.4 3.9 27 104-130 3-29 (175)
383 PF08433 KTI12: Chromatin asso 95.0 0.032 6.9E-07 57.2 4.9 26 106-131 2-27 (270)
384 PF00154 RecA: recA bacterial 94.9 0.11 2.4E-06 54.1 8.9 84 105-195 53-142 (322)
385 COG0465 HflB ATP-dependent Zn 94.9 0.25 5.4E-06 55.7 12.0 50 83-132 149-210 (596)
386 TIGR00959 ffh signal recogniti 94.9 0.16 3.5E-06 55.6 10.4 26 105-130 99-124 (428)
387 PRK05917 DNA polymerase III su 94.9 0.44 9.5E-06 49.1 12.9 38 93-130 6-44 (290)
388 TIGR01650 PD_CobS cobaltochela 94.9 0.082 1.8E-06 55.1 7.7 64 83-153 44-107 (327)
389 PRK05342 clpX ATP-dependent pr 94.9 0.064 1.4E-06 58.6 7.3 46 85-130 72-133 (412)
390 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.13 2.7E-06 47.9 8.1 116 106-223 3-139 (159)
391 PRK12678 transcription termina 94.9 0.084 1.8E-06 58.5 8.0 91 105-196 416-515 (672)
392 TIGR00150 HI0065_YjeE ATPase, 94.9 0.048 1E-06 48.9 5.2 27 105-131 22-48 (133)
393 cd03223 ABCD_peroxisomal_ALDP 94.9 0.083 1.8E-06 50.1 7.2 27 104-130 26-52 (166)
394 cd02027 APSK Adenosine 5'-phos 94.9 0.11 2.3E-06 48.3 7.7 24 107-130 1-24 (149)
395 KOG0727 26S proteasome regulat 94.8 0.13 2.8E-06 50.0 8.2 47 86-132 157-216 (408)
396 PRK10751 molybdopterin-guanine 94.8 0.03 6.4E-07 52.8 3.9 29 104-132 5-33 (173)
397 PRK09280 F0F1 ATP synthase sub 94.8 0.16 3.4E-06 55.7 9.9 92 104-196 143-250 (463)
398 TIGR00764 lon_rel lon-related 94.8 0.073 1.6E-06 61.4 7.8 76 83-162 17-92 (608)
399 PF06068 TIP49: TIP49 C-termin 94.8 0.039 8.5E-07 57.6 5.0 53 83-135 23-80 (398)
400 PRK11823 DNA repair protein Ra 94.8 0.098 2.1E-06 58.1 8.6 85 105-194 80-166 (446)
401 cd02029 PRK_like Phosphoribulo 94.8 0.11 2.5E-06 52.2 8.1 26 107-132 1-26 (277)
402 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.066 1.4E-06 49.4 6.1 27 104-130 25-51 (144)
403 PF13245 AAA_19: Part of AAA d 94.8 0.098 2.1E-06 41.9 6.3 25 105-129 10-35 (76)
404 cd02023 UMPK Uridine monophosp 94.8 0.022 4.9E-07 55.9 3.1 23 107-129 1-23 (198)
405 KOG0651 26S proteasome regulat 94.7 0.065 1.4E-06 54.0 6.2 28 105-132 166-193 (388)
406 TIGR01425 SRP54_euk signal rec 94.7 0.15 3.2E-06 55.6 9.5 28 105-132 100-127 (429)
407 PRK15453 phosphoribulokinase; 94.7 0.18 3.9E-06 51.2 9.4 27 104-130 4-30 (290)
408 COG2274 SunT ABC-type bacterio 94.7 0.13 2.9E-06 60.0 9.7 27 104-130 498-524 (709)
409 TIGR02322 phosphon_PhnN phosph 94.7 0.027 5.9E-07 54.3 3.5 25 106-130 2-26 (179)
410 PRK13947 shikimate kinase; Pro 94.7 0.026 5.5E-07 54.0 3.3 25 107-131 3-27 (171)
411 KOG3864 Uncharacterized conser 94.7 0.0081 1.8E-07 56.6 -0.2 70 712-783 122-191 (221)
412 cd02024 NRK1 Nicotinamide ribo 94.7 0.023 5E-07 54.6 2.9 23 107-129 1-23 (187)
413 TIGR03878 thermo_KaiC_2 KaiC d 94.7 0.19 4E-06 51.6 9.8 39 105-145 36-74 (259)
414 PRK08927 fliI flagellum-specif 94.7 0.19 4.2E-06 54.8 10.2 89 104-196 157-260 (442)
415 COG0488 Uup ATPase components 94.7 0.18 3.9E-06 56.8 10.3 119 105-225 348-499 (530)
416 COG0237 CoaE Dephospho-CoA kin 94.6 0.074 1.6E-06 51.7 6.2 23 105-127 2-24 (201)
417 PRK08149 ATP synthase SpaL; Va 94.6 0.13 2.8E-06 56.0 8.7 89 104-196 150-253 (428)
418 PRK06002 fliI flagellum-specif 94.6 0.086 1.9E-06 57.5 7.2 89 105-196 165-266 (450)
419 PRK05201 hslU ATP-dependent pr 94.6 0.082 1.8E-06 56.8 6.9 76 85-160 16-107 (443)
420 cd00227 CPT Chloramphenicol (C 94.5 0.036 7.7E-07 53.2 3.9 26 105-130 2-27 (175)
421 cd03246 ABCC_Protease_Secretio 94.5 0.093 2E-06 50.2 6.7 26 105-130 28-53 (173)
422 PF00625 Guanylate_kin: Guanyl 94.5 0.044 9.5E-07 53.0 4.5 38 105-144 2-39 (183)
423 PRK13949 shikimate kinase; Pro 94.5 0.033 7.1E-07 52.9 3.5 25 106-130 2-26 (169)
424 cd01878 HflX HflX subfamily. 94.5 0.084 1.8E-06 52.1 6.6 27 103-129 39-65 (204)
425 CHL00081 chlI Mg-protoporyphyr 94.5 0.051 1.1E-06 57.5 5.2 49 82-130 15-63 (350)
426 TIGR02030 BchI-ChlI magnesium 94.5 0.062 1.3E-06 56.9 5.8 47 83-129 3-49 (337)
427 cd02028 UMPK_like Uridine mono 94.5 0.031 6.8E-07 53.7 3.3 25 107-131 1-25 (179)
428 cd02020 CMPK Cytidine monophos 94.5 0.03 6.5E-07 51.9 3.1 24 107-130 1-24 (147)
429 TIGR02655 circ_KaiC circadian 94.5 0.2 4.4E-06 56.5 10.3 54 104-162 262-315 (484)
430 PF13086 AAA_11: AAA domain; P 94.4 0.1 2.2E-06 52.7 7.2 51 107-157 19-74 (236)
431 KOG0728 26S proteasome regulat 94.4 1.1 2.4E-05 43.8 13.4 145 88-252 151-330 (404)
432 TIGR00416 sms DNA repair prote 94.4 0.13 2.9E-06 57.1 8.5 85 105-194 94-180 (454)
433 TIGR03881 KaiC_arch_4 KaiC dom 94.4 0.34 7.5E-06 48.7 10.9 52 105-161 20-71 (229)
434 KOG1532 GTPase XAB1, interacts 94.4 0.048 1E-06 53.7 4.3 61 105-165 19-88 (366)
435 PRK14530 adenylate kinase; Pro 94.4 0.036 7.8E-07 55.2 3.7 25 106-130 4-28 (215)
436 COG5238 RNA1 Ran GTPase-activa 94.4 0.082 1.8E-06 52.2 5.8 139 458-607 88-255 (388)
437 TIGR01040 V-ATPase_V1_B V-type 94.4 0.14 3.1E-06 55.7 8.2 92 104-195 140-258 (466)
438 COG1124 DppF ABC-type dipeptid 94.4 0.039 8.4E-07 54.0 3.6 27 104-130 32-58 (252)
439 COG1120 FepC ABC-type cobalami 94.4 0.17 3.6E-06 50.9 8.2 27 104-130 27-53 (258)
440 cd01132 F1_ATPase_alpha F1 ATP 94.4 0.16 3.5E-06 51.5 8.2 88 105-196 69-173 (274)
441 PF13306 LRR_5: Leucine rich r 94.4 0.082 1.8E-06 47.6 5.7 99 460-564 10-112 (129)
442 cd03228 ABCC_MRP_Like The MRP 94.4 0.1 2.3E-06 49.7 6.6 27 104-130 27-53 (171)
443 COG0467 RAD55 RecA-superfamily 94.4 0.066 1.4E-06 55.2 5.6 55 103-162 21-75 (260)
444 COG0714 MoxR-like ATPases [Gen 94.3 0.096 2.1E-06 56.0 7.0 64 86-156 26-89 (329)
445 cd02021 GntK Gluconate kinase 94.3 0.032 7E-07 52.0 2.9 23 107-129 1-23 (150)
446 COG0003 ArsA Predicted ATPase 94.3 0.083 1.8E-06 55.3 6.1 49 105-155 2-50 (322)
447 TIGR00073 hypB hydrogenase acc 94.3 0.047 1E-06 54.0 4.2 32 99-130 16-47 (207)
448 PF03266 NTPase_1: NTPase; In 94.3 0.04 8.7E-07 52.1 3.5 23 108-130 2-24 (168)
449 PRK14531 adenylate kinase; Pro 94.3 0.13 2.9E-06 49.6 7.3 25 106-130 3-27 (183)
450 TIGR00382 clpX endopeptidase C 94.3 0.16 3.4E-06 55.3 8.4 46 85-130 78-141 (413)
451 PF03193 DUF258: Protein of un 94.3 0.069 1.5E-06 49.6 4.9 34 93-129 26-59 (161)
452 cd00071 GMPK Guanosine monopho 94.2 0.033 7.2E-07 50.8 2.7 24 107-130 1-24 (137)
453 PRK13407 bchI magnesium chelat 94.2 0.067 1.5E-06 56.5 5.3 49 81-129 5-53 (334)
454 PRK09519 recA DNA recombinatio 94.2 0.22 4.7E-06 58.2 9.8 83 105-194 60-148 (790)
455 TIGR01039 atpD ATP synthase, F 94.2 0.28 6.1E-06 53.6 10.1 92 104-196 142-249 (461)
456 cd00046 DEXDc DEAD-like helica 94.2 0.17 3.6E-06 46.0 7.5 36 107-142 2-37 (144)
457 PF06745 KaiC: KaiC; InterPro 94.2 0.13 2.9E-06 51.6 7.3 47 105-156 19-67 (226)
458 TIGR03263 guanyl_kin guanylate 94.2 0.037 8E-07 53.4 3.1 24 106-129 2-25 (180)
459 PRK07276 DNA polymerase III su 94.2 1.4 2.9E-05 45.7 14.5 151 90-250 8-172 (290)
460 cd00464 SK Shikimate kinase (S 94.2 0.043 9.3E-07 51.4 3.4 23 108-130 2-24 (154)
461 TIGR00750 lao LAO/AO transport 94.1 0.16 3.4E-06 53.5 7.9 38 95-132 22-61 (300)
462 PTZ00185 ATPase alpha subunit; 94.1 0.24 5.1E-06 54.4 9.3 91 105-196 189-301 (574)
463 TIGR03575 selen_PSTK_euk L-ser 94.1 0.15 3.2E-06 53.9 7.6 24 108-131 2-25 (340)
464 PRK14529 adenylate kinase; Pro 94.1 0.14 3E-06 50.7 7.0 25 107-131 2-26 (223)
465 PRK05057 aroK shikimate kinase 94.1 0.049 1.1E-06 52.0 3.7 26 105-130 4-29 (172)
466 PRK05800 cobU adenosylcobinami 94.1 0.17 3.6E-06 48.1 7.2 48 106-159 2-49 (170)
467 PRK00300 gmk guanylate kinase; 94.1 0.048 1E-06 53.9 3.7 27 104-130 4-30 (205)
468 PF13504 LRR_7: Leucine rich r 94.1 0.034 7.4E-07 30.0 1.4 16 533-548 2-17 (17)
469 CHL00060 atpB ATP synthase CF1 94.0 0.19 4.2E-06 55.2 8.5 92 104-196 160-274 (494)
470 PRK13948 shikimate kinase; Pro 94.0 0.054 1.2E-06 52.0 3.8 28 103-130 8-35 (182)
471 PRK14527 adenylate kinase; Pro 94.0 0.057 1.2E-06 52.6 4.1 27 104-130 5-31 (191)
472 PRK03846 adenylylsulfate kinas 94.0 0.059 1.3E-06 52.9 4.2 29 103-131 22-50 (198)
473 PRK13975 thymidylate kinase; P 94.0 0.05 1.1E-06 53.3 3.7 26 106-131 3-28 (196)
474 TIGR01041 ATP_syn_B_arch ATP s 94.0 0.32 6.9E-06 53.6 10.1 92 105-196 141-250 (458)
475 PRK12339 2-phosphoglycerate ki 94.0 0.054 1.2E-06 52.7 3.8 25 105-129 3-27 (197)
476 cd03281 ABC_MSH5_euk MutS5 hom 93.9 0.066 1.4E-06 53.1 4.4 23 105-127 29-51 (213)
477 COG0529 CysC Adenylylsulfate k 93.9 0.098 2.1E-06 48.4 5.0 31 102-132 20-50 (197)
478 TIGR00176 mobB molybdopterin-g 93.9 0.05 1.1E-06 50.8 3.3 33 107-140 1-33 (155)
479 PRK06936 type III secretion sy 93.9 0.24 5.1E-06 54.0 8.8 89 104-196 161-264 (439)
480 PRK13946 shikimate kinase; Pro 93.9 0.052 1.1E-06 52.5 3.5 26 106-131 11-36 (184)
481 cd01672 TMPK Thymidine monopho 93.9 0.16 3.4E-06 49.9 7.0 26 106-131 1-26 (200)
482 PRK13695 putative NTPase; Prov 93.8 0.078 1.7E-06 50.8 4.6 34 107-141 2-35 (174)
483 KOG0737 AAA+-type ATPase [Post 93.8 0.85 1.9E-05 47.6 12.1 29 104-132 126-154 (386)
484 COG1116 TauB ABC-type nitrate/ 93.8 0.05 1.1E-06 53.6 3.2 25 104-128 28-52 (248)
485 PRK10078 ribose 1,5-bisphospho 93.8 0.048 1E-06 52.9 3.2 24 106-129 3-26 (186)
486 cd00820 PEPCK_HprK Phosphoenol 93.8 0.059 1.3E-06 46.2 3.2 22 105-126 15-36 (107)
487 TIGR01313 therm_gnt_kin carboh 93.8 0.042 9.1E-07 52.0 2.7 22 108-129 1-22 (163)
488 COG3854 SpoIIIAA ncharacterize 93.8 0.18 4E-06 48.6 6.8 120 96-222 128-253 (308)
489 PF08477 Miro: Miro-like prote 93.8 0.055 1.2E-06 48.0 3.3 23 108-130 2-24 (119)
490 COG2019 AdkA Archaeal adenylat 93.8 0.063 1.4E-06 49.1 3.5 25 105-129 4-28 (189)
491 TIGR02868 CydC thiol reductant 93.8 0.21 4.5E-06 57.6 8.8 27 104-130 360-386 (529)
492 PF01078 Mg_chelatase: Magnesi 93.8 0.099 2.1E-06 50.5 5.1 44 83-128 2-45 (206)
493 PF05970 PIF1: PIF1-like helic 93.8 0.17 3.6E-06 54.9 7.5 43 90-132 7-49 (364)
494 cd01125 repA Hexameric Replica 93.8 0.4 8.7E-06 48.6 9.9 24 107-130 3-26 (239)
495 KOG0652 26S proteasome regulat 93.8 1.3 2.8E-05 43.6 12.4 51 82-132 169-232 (424)
496 COG1763 MobB Molybdopterin-gua 93.7 0.061 1.3E-06 49.9 3.5 29 105-133 2-30 (161)
497 PHA02774 E1; Provisional 93.7 0.12 2.5E-06 57.7 6.1 48 93-144 421-469 (613)
498 COG0703 AroK Shikimate kinase 93.7 0.059 1.3E-06 50.3 3.3 27 106-132 3-29 (172)
499 TIGR00708 cobA cob(I)alamin ad 93.7 0.36 7.8E-06 45.5 8.4 117 105-223 5-141 (173)
500 PTZ00494 tuzin-like protein; P 93.6 1.5 3.2E-05 47.1 13.6 164 80-252 367-543 (664)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-85 Score=753.62 Aligned_cols=703 Identities=27% Similarity=0.411 Sum_probs=539.6
Q ss_pred hhHHHHHHHHHHhHhhhhhh---------------hccccccccCCcC-hhHHhhHhHHHHHHHhhHHhhhccCCCccee
Q 003192 4 SGANKIIDEAVKSIEGADRA---------------KIKNQCFKGLCPN-LKVQYQLSEKAAREAKPVAGLHETGKFHKVS 67 (840)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~ 67 (840)
+.++|++|+|++.+..+..+ ..++-|+.++|.+ ...-|.+++++.++.+.++.+..++.|..+.
T Consensus 62 e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~ 141 (889)
T KOG4658|consen 62 EDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVG 141 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccc
Confidence 45667888888877654311 1234466666643 4555677888888888888887666666554
Q ss_pred eccCCccccccccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh-ccCCCCcEEEEEeCCC
Q 003192 68 YHINPEKIWLTLSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK-GHKLFDEVVFVDVPQI 146 (840)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~ 146 (840)
..+.+.....+.|..++.-+|.++.++++.+.|.+++..+|+|+||||+||||||++++|+.. ++.+||.++||.||++
T Consensus 142 ~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~ 221 (889)
T KOG4658|consen 142 ESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE 221 (889)
T ss_pred ccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccc
Confidence 322211121222222221189999999999999988889999999999999999999999998 9999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCccccC---hhhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcc
Q 003192 147 PDIKKMQGQIADELGLFLCEES---ESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRG 223 (840)
Q Consensus 147 ~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~ 223 (840)
++...++++|++.++....... ..+.+..+.+.|. +|||+|||||||+..+|+.++.++|...+||+|++|||++.
T Consensus 222 f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~ 300 (889)
T KOG4658|consen 222 FTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEE 300 (889)
T ss_pred ccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHh
Confidence 9999999999999987443322 2345566666666 78999999999999999999999999999999999999999
Q ss_pred hhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhcc-CHHHHHHHHH
Q 003192 224 VLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREE-NLFEWKNALL 302 (840)
Q Consensus 224 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~-~~~~w~~~l~ 302 (840)
|+...|++...++++.|+.++||.||++.++.......+.++++|++++++|+|+|||++++|+.|+.+ +.++|+.+.+
T Consensus 301 V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~ 380 (889)
T KOG4658|consen 301 VCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALN 380 (889)
T ss_pred hhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHc
Confidence 987668888899999999999999999997665444556699999999999999999999999999977 8889999999
Q ss_pred HhcCCCCCCCcchhhhhhhhhhccccCCCchhhHHHHHHhhccCCcCCCCHHHHHHHHhhcccccccccHHHHHHhHHHH
Q 003192 303 ELKRPSWRNFSGVQAAACSTIELSFNFLTGEDLKSTLLLCSLMGYTYHASMLDLLKYGMGMGLFKDVNTMEEARDRACPL 382 (840)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~~ 382 (840)
.+.+....+.+++.+.+++++++||++||++ +|.||+|||+||+|+.|++++|+.+||||||+.+....+.+++.++++
T Consensus 381 ~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~ 459 (889)
T KOG4658|consen 381 VLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDY 459 (889)
T ss_pred cccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHH
Confidence 9988766666777899999999999999954 999999999999999999999999999999998866677788999999
Q ss_pred HHHhhhcccccccc---cCCcEEechHHHHHHHHHhh-----ccccEEEEeCCCcCCccccccccccccEEeecccCCCC
Q 003192 383 VHKLKACSLLLDSH---ISEMFAMHDIVRDVAISIAS-----RDQHVFTMRNHVVPQEWLDKDTLKFCTAISLHKCDVNE 454 (840)
Q Consensus 383 ~~~L~~~~l~~~~~---~~~~~~mHdlv~~~~~~i~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 454 (840)
+.+|++++|+.... ...+|+|||+|||+|.++|+ .++ .++..+......+....+...|++++.++.+..
T Consensus 460 i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~ 537 (889)
T KOG4658|consen 460 IEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH 537 (889)
T ss_pred HHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCcCccccccccchhheeEEEEeccchhh
Confidence 99999999998764 45789999999999999999 565 344443334445666677889999999999999
Q ss_pred CCCcCCCCCceEEEecCCCC-CCCCChhhhcCCCceeEEEecCC-cCCCCchhhhcccCCcEEEecCcccCC-cccccCC
Q 003192 455 LPEELECPQLKFFYMYPKDP-ALKIPDKFFAGMIELRVLDLTKM-HLLSLPSSLHLLVNLRTLCLDQSVLGD-IAVIGEL 531 (840)
Q Consensus 455 l~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L 531 (840)
++....+++|++|.+..|.. ...++..+|..++.|++|||++| .+..+|.+|++|.|||||+|+++.+.. |.++++|
T Consensus 538 ~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 538 IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL 617 (889)
T ss_pred ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence 99988999999999999873 56788889999999999999976 467999999999999999999999988 6789999
Q ss_pred CCCCEEeccCCC-CCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCC
Q 003192 532 KQLEILSLSSSD-IEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILP 610 (840)
Q Consensus 532 ~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 610 (840)
+.|.+||+..+. +..+|.....|++||+|.+..-. . ..+...+.++.++.+|+.|.+.......+.
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~----~---------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e 684 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA----L---------SNDKLLLKELENLEHLENLSITISSVLLLE 684 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccc----c---------ccchhhHHhhhcccchhhheeecchhHhHh
Confidence 999999999884 44556666669999999887622 1 122334556666777776666433220000
Q ss_pred CccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcE
Q 003192 611 RGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKH 690 (840)
Q Consensus 611 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~ 690 (840)
.......| ....+.+.+.++...+ ....+ ..+.+|+.
T Consensus 685 ~l~~~~~L----------------------------------------~~~~~~l~~~~~~~~~-~~~~~--~~l~~L~~ 721 (889)
T KOG4658|consen 685 DLLGMTRL----------------------------------------RSLLQSLSIEGCSKRT-LISSL--GSLGNLEE 721 (889)
T ss_pred hhhhhHHH----------------------------------------HHHhHhhhhcccccce-eeccc--ccccCcce
Confidence 00011111 1112222222222111 12222 66788888
Q ss_pred EEeecCCCcceeecCCCCccCC-CCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhccc
Q 003192 691 LHVQNSPYILCIVDSVEGVACD-AFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQ 769 (840)
Q Consensus 691 L~l~~~~~l~~l~~~~~~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~ 769 (840)
|.+.+|...+............ .|++|..+.+.+|..++... .....|+|+.|.+..|+.++.+.+ ....+..
T Consensus 722 L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~----~~~f~~~L~~l~l~~~~~~e~~i~--~~k~~~~ 795 (889)
T KOG4658|consen 722 LSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT----WLLFAPHLTSLSLVSCRLLEDIIP--KLKALLE 795 (889)
T ss_pred EEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc----hhhccCcccEEEEecccccccCCC--HHHHhhh
Confidence 8888887654322111111222 37888888888888877663 223568999999999998888766 3344444
Q ss_pred CcE
Q 003192 770 LQV 772 (840)
Q Consensus 770 L~~ 772 (840)
++.
T Consensus 796 l~~ 798 (889)
T KOG4658|consen 796 LKE 798 (889)
T ss_pred ccc
Confidence 544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.6e-66 Score=630.35 Aligned_cols=683 Identities=19% Similarity=0.258 Sum_probs=456.4
Q ss_pred ccCCcccccchHHHHHHHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe---CCCc------
Q 003192 79 LSKGYQAFDSRISTFKDITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV---PQIP------ 147 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~------ 147 (840)
.+.+..+++||+..++++..+|. .+++++|+||||||+||||||+.+|++...+ |+..+|+.. +...
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhhcccc
Confidence 34566789999999999998875 4578999999999999999999999987654 988887742 1110
Q ss_pred -----c-HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCC
Q 003192 148 -----D-IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRS 221 (840)
Q Consensus 148 -----~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~ 221 (840)
+ ...++++++..+....... ......+.+.+. ++|+||||||||+..+|+.+.....+.++|++||||||+
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 0 1234445554442221111 011233445555 789999999999999999988777777899999999999
Q ss_pred cchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhccCHHHHHHHH
Q 003192 222 RGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREENLFEWKNAL 301 (840)
Q Consensus 222 ~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~w~~~l 301 (840)
+.++. .++...+|+++.++.++||+||+++||... ..+.++.+++++|+++|+|+||||+++|+.|++++..+|+.++
T Consensus 334 ~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 334 KHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred HHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 99863 355667999999999999999999987653 2345688999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCcchhhhhhhhhhccccCCCchhhHHHHHHhhccCCcCCCCHHHHHHHHhhcccccccccHHHHHHhHHH
Q 003192 302 LELKRPSWRNFSGVQAAACSTIELSFNFLTGEDLKSTLLLCSLMGYTYHASMLDLLKYGMGMGLFKDVNTMEEARDRACP 381 (840)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~ 381 (840)
+++.... ++.+.++|++||++|++++.|.||+++|.|+.+..+ +.+..|+|.+.... ..
T Consensus 412 ~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~ 470 (1153)
T PLN03210 412 PRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NI 470 (1153)
T ss_pred HHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hh
Confidence 9986532 457899999999999875479999999999876544 34667777665431 12
Q ss_pred HHHHhhhcccccccccCCcEEechHHHHHHHHHhhccccEEEEeCCCcCCcccc---------ccccccccEEeecccCC
Q 003192 382 LVHKLKACSLLLDSHISEMFAMHDIVRDVAISIASRDQHVFTMRNHVVPQEWLD---------KDTLKFCTAISLHKCDV 452 (840)
Q Consensus 382 ~~~~L~~~~l~~~~~~~~~~~mHdlv~~~~~~i~~~e~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~l~~~~~ 452 (840)
.++.|+++||++.. .+.++|||++|+||++++.++.. .++.+.+.|.. ....++++.+++....+
T Consensus 471 ~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~----~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~ 544 (1153)
T PLN03210 471 GLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSN----EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI 544 (1153)
T ss_pred ChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcC----CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc
Confidence 47889999999765 35799999999999999876531 11111122221 11224566666655544
Q ss_pred CCC--CCc-C-CCCCceEEEecCCC------CCCCCChhhhcCC-CceeEEEecCCcCCCCchhhhcccCCcEEEecCcc
Q 003192 453 NEL--PEE-L-ECPQLKFFYMYPKD------PALKIPDKFFAGM-IELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 453 ~~l--~~~-~-~~~~L~~L~l~~~~------~~~~~~~~~~~~l-~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~ 521 (840)
..+ ... + ++++|+.|.+..+. ....+|.. |..+ ..|+.|++.++.+..+|..+ .+.+|+.|++++|.
T Consensus 545 ~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 545 DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK 622 (1153)
T ss_pred ceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc
Confidence 332 111 2 67788888775442 22345554 3333 45778888777777777766 46777777777777
Q ss_pred cCC-cccccCCCCCCEEeccCC-CCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeE
Q 003192 522 LGD-IAVIGELKQLEILSLSSS-DIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTL 599 (840)
Q Consensus 522 l~~-~~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L 599 (840)
+.. +..+..+++|++|+|+++ .++.+|. ++.+++|++|++++|..+..+|.. ++++++|+.|
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s---------------i~~L~~L~~L 686 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS---------------IQYLNKLEDL 686 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh---------------hhccCCCCEE
Confidence 766 355677777777777776 4666664 677777777777777777777653 3456677777
Q ss_pred EEEe-ecCccCCCccccccCcEEEEEEcCcCCcC-CCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchh--
Q 003192 600 EIHI-QGAKILPRGLFSKKLERYKILIGDEWDWH-GKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKN-- 675 (840)
Q Consensus 600 ~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-- 675 (840)
++++ +.+..+|..+.+++|+.|.+..+...... ....+++.|.+..+....+|... .+++|+.|.+.++.....
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc--cccccccccccccchhhccc
Confidence 7764 34566666656666777766554432221 12234555666655544444332 255666666654332110
Q ss_pred ----hcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEec
Q 003192 676 ----VLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGN 751 (840)
Q Consensus 676 ----~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~ 751 (840)
.+. .....+++|+.|++++|+.+..+|.. .+.+++|+.|++++|++++.++ ... .+++|+.|++++
T Consensus 765 ~~~~l~~-~~~~~~~sL~~L~Ls~n~~l~~lP~s-----i~~L~~L~~L~Ls~C~~L~~LP---~~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 765 RVQPLTP-LMTMLSPSLTRLFLSDIPSLVELPSS-----IQNLHKLEHLEIENCINLETLP---TGI-NLESLESLDLSG 834 (1153)
T ss_pred cccccch-hhhhccccchheeCCCCCCccccChh-----hhCCCCCCEEECCCCCCcCeeC---CCC-CccccCEEECCC
Confidence 000 00122456777777766655555432 2456667777777776666663 221 466677777777
Q ss_pred CCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccCcccccccceeecC
Q 003192 752 CNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNEITFSKLKSLSLS 831 (840)
Q Consensus 752 C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~ 831 (840)
|.++..+|. ..++|+.|+++++ .++.++ .++..+++|+.|++.+|+.+..+|.....+++|+.|+++
T Consensus 835 c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP-------~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 835 CSRLRTFPD-----ISTNISDLNLSRT-GIEEVP-------WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred CCccccccc-----cccccCEeECCCC-CCccCh-------HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 766666543 1356666666653 444432 123456667777777777777777666667777777777
Q ss_pred CCCCccC
Q 003192 832 YLPSLTS 838 (840)
Q Consensus 832 ~cp~L~~ 838 (840)
+|++|+.
T Consensus 902 ~C~~L~~ 908 (1153)
T PLN03210 902 DCGALTE 908 (1153)
T ss_pred CCccccc
Confidence 7776654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.2e-43 Score=369.90 Aligned_cols=277 Identities=30% Similarity=0.473 Sum_probs=218.6
Q ss_pred hHHHHHHHHHHhCC--CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc
Q 003192 89 RISTFKDITNALSN--PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE 166 (840)
Q Consensus 89 r~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 166 (840)
|+.++++|.+.|.+ ++.++|+|+||||+||||||+.++++...+.+|+.++|+++++..+...++.+|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 7899999999999999999999999977778899999999999999999999999999887432
Q ss_pred ----cChhhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcchhhcccCccceEEccCCCH
Q 003192 167 ----ESESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLSREMDSEINFLVGILSQ 242 (840)
Q Consensus 167 ----~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l~~L~~ 242 (840)
.........+.+.+. ++++||||||||+...|+.+...++....|++||||||+..++.........|++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 233445566666665 679999999999999999888888877889999999999988643333367899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhcc-CHHHHHHHHHHhcCCCCCCCcchhhhhhh
Q 003192 243 EESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREE-NLFEWKNALLELKRPSWRNFSGVQAAACS 321 (840)
Q Consensus 243 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 321 (840)
++|++||++.++.......+..++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 99999999996544423345567789999999999999999999999744 778999999887654432 2224678999
Q ss_pred hhhccccCCCchhhHHHHHHhhccCCcCCCCHHHHHHHHhhcccccc
Q 003192 322 TIELSFNFLTGEDLKSTLLLCSLMGYTYHASMLDLLKYGMGMGLFKD 368 (840)
Q Consensus 322 ~l~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~wiaeg~i~~ 368 (840)
++.+||+.||++ +|.||+|||+||+++.|+++.++++|++|||+..
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999997 8999999999999999999999999999999975
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.4e-26 Score=285.55 Aligned_cols=379 Identities=18% Similarity=0.177 Sum_probs=214.2
Q ss_pred cccccEEeecccCC-CCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCC-CCchhhhcccCCcEE
Q 003192 439 LKFCTAISLHKCDV-NELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLL-SLPSSLHLLVNLRTL 515 (840)
Q Consensus 439 ~~~~~~l~l~~~~~-~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~L 515 (840)
+.+++.|++++|.+ ..+|..+ ++++|++|++++|.+...+|.. ++++++|++|++++|.+. .+|..++++++|++|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 45666777766665 3455544 6666777777666665555554 566677777777766665 456666677777777
Q ss_pred EecCcccCC--cccccCCCCCCEEeccCCCCC-CCcHHHhccCCCCEEecCCCCCCcccccccccc------ccccc---
Q 003192 516 CLDQSVLGD--IAVIGELKQLEILSLSSSDIE-HLPREIGRLSKLRLLDLTNCSKLKSIPPNVERL------NIERS--- 583 (840)
Q Consensus 516 ~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L------~~~~~--- 583 (840)
++++|.+.. |..++++++|++|++++|.+. .+|..+.++++|++|++++|.....+|..+..+ .+..+
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 777666654 455666677777777666665 556666666677777776655444555433322 22211
Q ss_pred cCChhhhhcCCCCCeEEEEeecCc-cCCCcc-ccccCcEEEEEEcCc----CCcCCCCCCccEEEEeecCcccchhhHHH
Q 003192 584 NASLDELKHLSRLTTLEIHIQGAK-ILPRGL-FSKKLERYKILIGDE----WDWHGKYETSRTLKLMLNTRTCLENGTIM 657 (840)
Q Consensus 584 ~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~l~~l~L~~~~~~~~~~~~~~ 657 (840)
+..+..+..+++|+.|+++.|.+. .+|..+ .+.+|+.|++..+.. ..+......++.+.+..|......+..+.
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence 223344566666677776666654 344333 445566666543321 11122223344444443333322222233
Q ss_pred hhcccceeeecccccchhhcccc----------------------cccccCCCcEEEeecCCCcceeecCCCCccCCCCC
Q 003192 658 QLKGIEDLYLGELQDVKNVLNEL----------------------DAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFP 715 (840)
Q Consensus 658 ~l~~L~~L~l~~~~~~~~~~~~l----------------------~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 715 (840)
.+++|+.|++.+|......+..+ ....+++|+.|++++|.....++.. ...+
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~------~~~~ 475 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS------FGSK 475 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc------cccc
Confidence 34445555554444333333332 0033455555555554433222211 1235
Q ss_pred ccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccc
Q 003192 716 LLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSN 795 (840)
Q Consensus 716 ~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 795 (840)
+|+.|+++++.....+ +.....+++|+.|++++|. +....|. .+.++++|++|++++| .+...++. .+
T Consensus 476 ~L~~L~ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~-l~~~~p~-~~~~l~~L~~L~Ls~N-~l~~~~p~------~~ 543 (968)
T PLN00113 476 RLENLDLSRNQFSGAV---PRKLGSLSELMQLKLSENK-LSGEIPD-ELSSCKKLVSLDLSHN-QLSGQIPA------SF 543 (968)
T ss_pred cceEEECcCCccCCcc---ChhhhhhhccCEEECcCCc-ceeeCCh-HHcCccCCCEEECCCC-cccccCCh------hH
Confidence 5666666664432232 2334456777777777753 5443332 4567778888888775 34433322 33
Q ss_pred hhhcccccccccccccccccccCcccccccceeecCCCCCc
Q 003192 796 QEIELITPRGIQKCSLTAEAATNEITFSKLKSLSLSYLPSL 836 (840)
Q Consensus 796 ~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~cp~L 836 (840)
.++++|+.|++++|...+.+|..+..+++|+.|++++|+-.
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 46788999999999998889988888999999999988643
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.1e-26 Score=286.48 Aligned_cols=375 Identities=17% Similarity=0.186 Sum_probs=215.0
Q ss_pred ccccEEeecccCCC-CCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCC-CCchhhhcccCCcEEE
Q 003192 440 KFCTAISLHKCDVN-ELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLL-SLPSSLHLLVNLRTLC 516 (840)
Q Consensus 440 ~~~~~l~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~L~ 516 (840)
++++.|++++|.+. .+|..+ ++++|++|++++|.+...+|.. |+++++|++|++++|.+. .+|..+.++++|++|+
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 44455555544442 333333 4455555555555444444433 445555555555555443 3444555555555555
Q ss_pred ecCcccCC--cccccCCCCCCEEeccCCCCC-CCcHHHhccCCCCEEecCCCCCCcccccccccc------ccccc---c
Q 003192 517 LDQSVLGD--IAVIGELKQLEILSLSSSDIE-HLPREIGRLSKLRLLDLTNCSKLKSIPPNVERL------NIERS---N 584 (840)
Q Consensus 517 L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L------~~~~~---~ 584 (840)
+++|.+.. |..++++++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..++.+ .+..+ +
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 55555433 233445555555555555444 344445555555555555544333444332211 11111 1
Q ss_pred CChhhhhcCCCCCeEEEEeecCc-cCCCcc-ccccCcEEEEEEcCc----CCcCCCCCCccEEEEeecCcccchhhHHHh
Q 003192 585 ASLDELKHLSRLTTLEIHIQGAK-ILPRGL-FSKKLERYKILIGDE----WDWHGKYETSRTLKLMLNTRTCLENGTIMQ 658 (840)
Q Consensus 585 ~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~ 658 (840)
..+..+..+++|+.|+++.|.+. .+|..+ .+++|+.|.+..+.. .......+.++.+++..|......+.....
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence 22334444455555555554443 223222 445666666544321 122334556666777666555544444456
Q ss_pred hcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCc
Q 003192 659 LKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTA 738 (840)
Q Consensus 659 l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~ 738 (840)
+++|+.|++++|...+.++..+ ..++|+.|++++|.....++. ....+++|+.|+++++.-...+ |...
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~---p~~~ 519 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPR-----KLGSLSELMQLKLSENKLSGEI---PDEL 519 (968)
T ss_pred CCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccCh-----hhhhhhccCEEECcCCcceeeC---ChHH
Confidence 7888889988887666555543 458999999999875433332 2356889999999997654455 4456
Q ss_pred ccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccC
Q 003192 739 ASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATN 818 (840)
Q Consensus 739 ~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 818 (840)
..+++|+.|++++|. ++...|. .+..+++|+.|++++|.- ...++ ..+..+++|+.+++++|+..+.+|..
T Consensus 520 ~~l~~L~~L~Ls~N~-l~~~~p~-~~~~l~~L~~L~Ls~N~l-~~~~p------~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 520 SSCKKLVSLDLSHNQ-LSGQIPA-SFSEMPVLSQLDLSQNQL-SGEIP------KNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred cCccCCCEEECCCCc-ccccCCh-hHhCcccCCEEECCCCcc-cccCC------hhHhcCcccCEEeccCCcceeeCCCc
Confidence 679999999999964 6665553 568899999999999754 33322 23457889999999999999998864
Q ss_pred cccccccceeecCCCCCc
Q 003192 819 EITFSKLKSLSLSYLPSL 836 (840)
Q Consensus 819 l~~l~~L~~L~L~~cp~L 836 (840)
+.+.++....+.+.|.+
T Consensus 591 -~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 591 -GAFLAINASAVAGNIDL 607 (968)
T ss_pred -chhcccChhhhcCCccc
Confidence 34555555555555433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=5.2e-26 Score=237.73 Aligned_cols=358 Identities=20% Similarity=0.279 Sum_probs=264.8
Q ss_pred cccccccEEeecccCC--CCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCc
Q 003192 437 DTLKFCTAISLHKCDV--NELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLR 513 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~--~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~ 513 (840)
+.++.+|.+++++|.+ ..+|... .++.++-|.|....+ ..+|++ ++.+.+|+.|.+++|.+..+-..++.|+.||
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 3456778888888877 4677776 788888888876665 467776 7788888888888888887777788888888
Q ss_pred EEEecCcccCC---cccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhh
Q 003192 514 TLCLDQSVLGD---IAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDEL 590 (840)
Q Consensus 514 ~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l 590 (840)
.+.++.|++.. |+.|-+|..|.+||||+|++++.|..+..-+++-.|+|++ +++..+|..+ +
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~l--------------f 146 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSL--------------F 146 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchH--------------H
Confidence 88888888765 6778888888888888888888888888888888888888 6778888755 5
Q ss_pred hcCCCCCeEEEEeecCccCCCcc-ccccCcEEEEEEcCc----CCcCCCCCCccEEEEeecCcc--cchhhHHHhhcccc
Q 003192 591 KHLSRLTTLEIHIQGAKILPRGL-FSKKLERYKILIGDE----WDWHGKYETSRTLKLMLNTRT--CLENGTIMQLKGIE 663 (840)
Q Consensus 591 ~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~l~~l~L~~~~~~--~~~~~~~~~l~~L~ 663 (840)
.+|+.|-.|+++.|.++.+|+.+ .+..|++|.++.++. +...+...+++.|+++..... .+|.. ...+.+|.
T Consensus 147 inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~ 225 (1255)
T KOG0444|consen 147 INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLR 225 (1255)
T ss_pred HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhh
Confidence 67777888888888888888877 677778877766552 222344455566666543222 23333 34478888
Q ss_pred eeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCC
Q 003192 664 DLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCN 743 (840)
Q Consensus 664 ~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~ 743 (840)
.++++.| .+..+|..+ -.+++|+.|+|+++. ++.+. ...+...+|++|+++. +.|+.+ |.....++.
T Consensus 226 dvDlS~N-~Lp~vPecl--y~l~~LrrLNLS~N~-iteL~-----~~~~~W~~lEtLNlSr-NQLt~L---P~avcKL~k 292 (1255)
T KOG0444|consen 226 DVDLSEN-NLPIVPECL--YKLRNLRRLNLSGNK-ITELN-----MTEGEWENLETLNLSR-NQLTVL---PDAVCKLTK 292 (1255)
T ss_pred hcccccc-CCCcchHHH--hhhhhhheeccCcCc-eeeee-----ccHHHHhhhhhhcccc-chhccc---hHHHhhhHH
Confidence 8888864 445566666 678899999998865 33332 1224456888999987 677777 566677888
Q ss_pred CCEEEEecCCCCc--ccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccCccc
Q 003192 744 LGIIKVGNCNKLK--SILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNEIT 821 (840)
Q Consensus 744 L~~L~l~~C~~L~--~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~ 821 (840)
|+.|.+.+ ++|+ .+|+ +++.|.+|+++...+ +.|+-+ +.++..+..|+.|.++.|..+ .+|..+.-
T Consensus 293 L~kLy~n~-NkL~FeGiPS--GIGKL~~Levf~aan-N~LElV-------PEglcRC~kL~kL~L~~NrLi-TLPeaIHl 360 (1255)
T KOG0444|consen 293 LTKLYANN-NKLTFEGIPS--GIGKLIQLEVFHAAN-NKLELV-------PEGLCRCVKLQKLKLDHNRLI-TLPEAIHL 360 (1255)
T ss_pred HHHHHhcc-CcccccCCcc--chhhhhhhHHHHhhc-cccccC-------chhhhhhHHHHHhccccccee-echhhhhh
Confidence 99888877 5555 4554 788889999998887 455544 234457788999988776554 68999999
Q ss_pred ccccceeecCCCCCcc
Q 003192 822 FSKLKSLSLSYLPSLT 837 (840)
Q Consensus 822 l~~L~~L~L~~cp~L~ 837 (840)
++-|+.|++.+.|+|.
T Consensus 361 L~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 361 LPDLKVLDLRENPNLV 376 (1255)
T ss_pred cCCcceeeccCCcCcc
Confidence 9999999999999985
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=8.5e-23 Score=251.54 Aligned_cols=359 Identities=18% Similarity=0.272 Sum_probs=235.8
Q ss_pred ccccccEEeecccCC-------CCCCCcC-CC-CCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhc
Q 003192 438 TLKFCTAISLHKCDV-------NELPEEL-EC-PQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHL 508 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~-------~~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~ 508 (840)
.+.+++.|.+..+.. ..+|..+ .+ ++||.|.+.++.. ..+|.. | .+.+|+.|++++|.+..+|..+..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSN-F-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCc-C-CccCCcEEECcCcccccccccccc
Confidence 356778887765432 1345544 33 4699999988765 567766 3 578999999999999999998999
Q ss_pred ccCCcEEEecCcc-cCCcccccCCCCCCEEeccCC-CCCCCcHHHhccCCCCEEecCCCCCCcccccccc-----ccccc
Q 003192 509 LVNLRTLCLDQSV-LGDIAVIGELKQLEILSLSSS-DIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVE-----RLNIE 581 (840)
Q Consensus 509 L~~L~~L~L~~~~-l~~~~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~-----~L~~~ 581 (840)
+++|++|+|++|. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|+.++.+|..+. .|.+.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Ls 712 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLS 712 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCC
Confidence 9999999999876 666778899999999999997 6779999999999999999999999999987441 12222
Q ss_pred cccCChhhh-hcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhc
Q 003192 582 RSNASLDEL-KHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLK 660 (840)
Q Consensus 582 ~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~ 660 (840)
... .+..+ ....+|+.|++++|.+..+|..+.+.+|+.|.+......... +.....+.......+
T Consensus 713 gc~-~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~-------------~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 713 GCS-RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW-------------ERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCC-CccccccccCCcCeeecCCCccccccccccccccccccccccchhhcc-------------ccccccchhhhhccc
Confidence 111 11111 123467777777777777777666666666655322110000 000111111222346
Q ss_pred ccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCccc
Q 003192 661 GIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAAS 740 (840)
Q Consensus 661 ~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~ 740 (840)
+|+.|++++|.....+|..+ +++++|+.|+|++|..++.+|... .+++|+.|++++|..+..++. .
T Consensus 779 sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~------~L~sL~~L~Ls~c~~L~~~p~------~ 844 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI------NLESLESLDLSGCSRLRTFPD------I 844 (1153)
T ss_pred cchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC------CccccCEEECCCCCccccccc------c
Confidence 77788887777776676665 677788888888877777665331 467788888888777766531 2
Q ss_pred CCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccC--
Q 003192 741 FCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATN-- 818 (840)
Q Consensus 741 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-- 818 (840)
.++|+.|++++ +.++.+|. .+..+++|+.|++++|+++..+... ...++.|+.+++.+|..+..++..
T Consensus 845 ~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~-------~~~L~~L~~L~l~~C~~L~~~~l~~~ 914 (1153)
T PLN03210 845 STNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLN-------ISKLKHLETVDFSDCGALTEASWNGS 914 (1153)
T ss_pred ccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCcc-------cccccCCCeeecCCCcccccccCCCC
Confidence 35677777777 45666654 4566777777777777777765332 124566677777777666533211
Q ss_pred -----------cccccccceeecCCCCCcc
Q 003192 819 -----------EITFSKLKSLSLSYLPSLT 837 (840)
Q Consensus 819 -----------l~~l~~L~~L~L~~cp~L~ 837 (840)
...+|+...+.+.+|.+|.
T Consensus 915 ~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 915 PSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred chhhhhhcccccccCCchhccccccccCCC
Confidence 0123444556667776664
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.5e-24 Score=224.08 Aligned_cols=326 Identities=20% Similarity=0.237 Sum_probs=247.8
Q ss_pred ccccccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEE
Q 003192 438 TLKFCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTL 515 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L 515 (840)
.+.+++.+++..|.+..+|... ...+|+.|+|..|.+. .+..+.+..++.||+||||.|.|+++|. +|..-.++++|
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 4678899999999999999887 5667999999988875 4555568899999999999999998875 66677899999
Q ss_pred EecCcccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhc
Q 003192 516 CLDQSVLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKH 592 (840)
Q Consensus 516 ~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~ 592 (840)
+|++|.|+.+ ..|.+|.+|-+|.|+.|.++.+|.. |.+|++|+.|+|.. +.+..+- + -.|.+
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive-~-------------ltFqg 243 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVE-G-------------LTFQG 243 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeeh-h-------------hhhcC
Confidence 9999999985 5688999999999999999999865 55699999999988 4444321 1 23678
Q ss_pred CCCCCeEEEEeecCccCCCcc--ccccCcEEEEEEcCc----CCcCCCCCCccEEEEeecCcccchhhHHHhhcccceee
Q 003192 593 LSRLTTLEIHIQGAKILPRGL--FSKKLERYKILIGDE----WDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLY 666 (840)
Q Consensus 593 l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~----~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~ 666 (840)
|++|+.|.+..|++..+.+.+ .+.++++|++..+.. -.|......++.|+|+.|....+....-+..++|+.|+
T Consensus 244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence 889999999999998888776 677888888876652 33666777888888888776665444444568999999
Q ss_pred ecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCE
Q 003192 667 LGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGI 746 (840)
Q Consensus 667 l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~ 746 (840)
|++|....-.+..+ ..+..|+.|.|++|. +.++ ..+.+..+.+|++|+|++..--..+.........+++|+.
T Consensus 324 Ls~N~i~~l~~~sf--~~L~~Le~LnLs~Ns-i~~l----~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 324 LSSNRITRLDEGSF--RVLSQLEELNLSHNS-IDHL----AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccccccccCChhHH--HHHHHhhhhcccccc-hHHH----HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 98876655444444 678889999998865 3332 2334566788999999874433333333344456899999
Q ss_pred EEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccc
Q 003192 747 IKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEE 789 (840)
Q Consensus 747 L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 789 (840)
|.+.+ ++++.++.. .+.++++||+|++.++ .+.++-+..+
T Consensus 397 L~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~N-aiaSIq~nAF 436 (873)
T KOG4194|consen 397 LRLTG-NQLKSIPKR-AFSGLEALEHLDLGDN-AIASIQPNAF 436 (873)
T ss_pred eeecC-ceeeecchh-hhccCcccceecCCCC-cceeeccccc
Confidence 99999 789998764 5678999999999874 5555544443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=4.9e-24 Score=221.96 Aligned_cols=362 Identities=17% Similarity=0.192 Sum_probs=252.8
Q ss_pred ccccEEeecccCCCCCCCc----CCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEE
Q 003192 440 KFCTAISLHKCDVNELPEE----LECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTL 515 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L 515 (840)
-+.+-++.+.+.++.+... .-.+.-++|++++|.+. .+...+|.++++|+.+++..|.++.+|...+...||+.|
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKL 130 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEE
Confidence 3455666666666554221 12346677888888764 444456788888888888888888888877777788888
Q ss_pred EecCcccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhc
Q 003192 516 CLDQSVLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKH 592 (840)
Q Consensus 516 ~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~ 592 (840)
+|.+|.|..+ ..+..++.|+.|||+.|.|+++|.. +..-.++++|+|++ +.++.+-. ..|..
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~--------------~~F~~ 195 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLET--------------GHFDS 195 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-cccccccc--------------ccccc
Confidence 8888888775 4577888888888888888877642 44456788888888 45555433 23566
Q ss_pred CCCCCeEEEEeecCccCCCcc--ccccCcEEEEEEcCc----CCcCCCCCCccEEEEeecCcccchhhHHHhhcccceee
Q 003192 593 LSRLTTLEIHIQGAKILPRGL--FSKKLERYKILIGDE----WDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLY 666 (840)
Q Consensus 593 l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~----~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~ 666 (840)
+.+|.+|.++.|.++.+|... .+.+|+.|++..+.. +--+...++++.++|..|....+.++.+..+.+++.|+
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 778888888888888888765 367777777754431 22244566777788888888888888888889999999
Q ss_pred ecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCE
Q 003192 667 LGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGI 746 (840)
Q Consensus 667 l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~ 746 (840)
|..|....--..++ -++.+|+.|+++.|. +..+. .-..+..++|+.|+|++ ++++.+.++ ....+..|++
T Consensus 276 L~~N~l~~vn~g~l--fgLt~L~~L~lS~Na-I~rih----~d~WsftqkL~~LdLs~-N~i~~l~~~--sf~~L~~Le~ 345 (873)
T KOG4194|consen 276 LETNRLQAVNEGWL--FGLTSLEQLDLSYNA-IQRIH----IDSWSFTQKLKELDLSS-NRITRLDEG--SFRVLSQLEE 345 (873)
T ss_pred cccchhhhhhcccc--cccchhhhhccchhh-hheee----cchhhhcccceeEeccc-cccccCChh--HHHHHHHhhh
Confidence 98876555444455 678899999998865 33321 11334578899999988 667776533 3345778888
Q ss_pred EEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccc-cCccccccc
Q 003192 747 IKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAA-TNEITFSKL 825 (840)
Q Consensus 747 L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~l~~l~~L 825 (840)
|+++. +++..+-. ..+.++.+|++|+++++ .+.-.+..... ....+++|+.|.+.+|+. +++| ..+..|++|
T Consensus 346 LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N-~ls~~IEDaa~---~f~gl~~LrkL~l~gNql-k~I~krAfsgl~~L 418 (873)
T KOG4194|consen 346 LNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSN-ELSWCIEDAAV---AFNGLPSLRKLRLTGNQL-KSIPKRAFSGLEAL 418 (873)
T ss_pred hcccc-cchHHHHh-hHHHHhhhhhhhcCcCC-eEEEEEecchh---hhccchhhhheeecCcee-eecchhhhccCccc
Confidence 89988 67887744 45677888999998874 55544433222 223477888888888654 4444 566678888
Q ss_pred ceeecCCCC
Q 003192 826 KSLSLSYLP 834 (840)
Q Consensus 826 ~~L~L~~cp 834 (840)
++|+|.+.+
T Consensus 419 E~LdL~~Na 427 (873)
T KOG4194|consen 419 EHLDLGDNA 427 (873)
T ss_pred ceecCCCCc
Confidence 888887754
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.4e-23 Score=217.91 Aligned_cols=309 Identities=23% Similarity=0.304 Sum_probs=214.4
Q ss_pred ccccccEEeecccCCCCCCCcC-CCCCceEEEecCCCCC-CCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEE
Q 003192 438 TLKFCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPA-LKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTL 515 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L 515 (840)
.+.++.||++++|++..+...+ .++.||++.+..|++. ..+|.++| .+..|.+||||.|.+.+.|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 4578999999999998777666 8999999999888764 46788755 8999999999999999999999999999999
Q ss_pred EecCcccCCcc--cccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCC----Cccccc--cccccccccc----
Q 003192 516 CLDQSVLGDIA--VIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSK----LKSIPP--NVERLNIERS---- 583 (840)
Q Consensus 516 ~L~~~~l~~~~--~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~----l~~lp~--~l~~L~~~~~---- 583 (840)
+||+|+|..++ -+-+|..|-+||||+|.+..+|+.+..|.+|++|+|++|.. +..+|. ++..|..+..
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 99999999853 37899999999999999999999999999999999999753 345553 3333333322
Q ss_pred cCChhhhhcCCCCCeEEEEeecCccCCCcc-ccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhccc
Q 003192 584 NASLDELKHLSRLTTLEIHIQGAKILPRGL-FSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGI 662 (840)
Q Consensus 584 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L 662 (840)
...+.++..+.+|+.+++++|++..+|..+ .+.+|++|.++.+. ...+... .....+|
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~--------------------iteL~~~-~~~W~~l 270 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK--------------------ITELNMT-EGEWENL 270 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc--------------------eeeeecc-HHHHhhh
Confidence 244566777888888888888888888766 66677777665433 1111111 1123456
Q ss_pred ceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCC
Q 003192 663 EDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFC 742 (840)
Q Consensus 663 ~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~ 742 (840)
++|+++.|. ++.+|..+ ..++.|+.|++.++.. .. .....+.+.+.+|+.+...+ ++|+-+ |.+...++
T Consensus 271 EtLNlSrNQ-Lt~LP~av--cKL~kL~kLy~n~NkL-~F---eGiPSGIGKL~~Levf~aan-N~LElV---PEglcRC~ 339 (1255)
T KOG0444|consen 271 ETLNLSRNQ-LTVLPDAV--CKLTKLTKLYANNNKL-TF---EGIPSGIGKLIQLEVFHAAN-NKLELV---PEGLCRCV 339 (1255)
T ss_pred hhhccccch-hccchHHH--hhhHHHHHHHhccCcc-cc---cCCccchhhhhhhHHHHhhc-cccccC---chhhhhhH
Confidence 666666643 33344444 5566666666655431 10 00111334455566666655 445544 44455566
Q ss_pred CCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccch
Q 003192 743 NLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSME 782 (840)
Q Consensus 743 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 782 (840)
.|+.|.++. ++|..+|. .+.-|+.|+.|++.++++|.
T Consensus 340 kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 340 KLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCcc
Confidence 666666654 56666654 45566667777776666664
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=6.2e-23 Score=204.86 Aligned_cols=378 Identities=20% Similarity=0.262 Sum_probs=248.3
Q ss_pred ccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCc
Q 003192 442 CTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 442 ~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~ 520 (840)
+..+.+++|.+..+.+.+ ++..+.+|.++.|..+ .+|++ ++.+..++.|+.+.|++..+|+.++.+.+|+.|+.++|
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 455666667666655554 6777777777777663 45544 56677777777777777777777777777777777777
Q ss_pred ccCC-cccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCcccccccccc------cccc--ccCChhhhh
Q 003192 521 VLGD-IAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERL------NIER--SNASLDELK 591 (840)
Q Consensus 521 ~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L------~~~~--~~~~~~~l~ 591 (840)
.+.. +++++.+..|+.|+..+|++.++|.++.++.+|..|++.+ ++++.+|+....+ +... -+..+.+++
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg 203 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNSNLLETLPPELG 203 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcccchhhhhcCChhhc
Confidence 7655 5667777777777777777777777777777777777777 4566666533322 1111 123456678
Q ss_pred cCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcC----CcCCCCCCccEEEEeecCcccchhhHHHhhcccceeee
Q 003192 592 HLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEW----DWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYL 667 (840)
Q Consensus 592 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l 667 (840)
.+.+|..|++..|.+..+|+.-.+..|..|++..+..- ....+.+.+..|+|..|.....|..+.- +.+|+.|++
T Consensus 204 ~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl-LrsL~rLDl 282 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL-LRSLERLDL 282 (565)
T ss_pred chhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH-hhhhhhhcc
Confidence 88889999999999988885557777777776544311 1234567777888888888888887654 788999999
Q ss_pred cccccchhhcccccccccCCCcEEEeecCCCcceee----------------c-----C---C-------CCccCCCCC-
Q 003192 668 GELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIV----------------D-----S---V-------EGVACDAFP- 715 (840)
Q Consensus 668 ~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~----------------~-----~---~-------~~~~~~~~~- 715 (840)
+++. ++.+|..+ +++ .|+.|-+.+++. +.+. + . . .......||
T Consensus 283 SNN~-is~Lp~sL--gnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 283 SNND-ISSLPYSL--GNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred cCCc-cccCCccc--ccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 9865 44456555 777 888898888752 1110 0 0 0 000112232
Q ss_pred -----ccceecccccccccccccc-----------------------------------------------ccCcccCCC
Q 003192 716 -----LLESLFLHNLTNLEKICNG-----------------------------------------------RLTAASFCN 743 (840)
Q Consensus 716 -----~L~~L~l~~~~~l~~i~~~-----------------------------------------------~~~~~~l~~ 743 (840)
+.+.|++++ .+++.+|.. +.....+++
T Consensus 358 ~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k 436 (565)
T KOG0472|consen 358 IYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQK 436 (565)
T ss_pred hhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence 455565554 333333210 111345788
Q ss_pred CCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhcc-------------c--cc--cccccchhhcccccccc
Q 003192 744 LGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILG-------------T--EE--ERISSNQEIELITPRGI 806 (840)
Q Consensus 744 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-------------~--~~--~~~~~~~~l~~L~~L~l 806 (840)
|..|++++ +-|.++|. -+..+..|+.|+++.+ ....++. . .. .....+.++..|..|++
T Consensus 437 Lt~L~L~N-N~Ln~LP~--e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 437 LTFLDLSN-NLLNDLPE--EMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred ceeeeccc-chhhhcch--hhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 99999999 45888876 3466888999999875 2222210 0 00 11224678888999999
Q ss_pred cccccccccccCcccccccceeecCCCC
Q 003192 807 QKCSLTAEAATNEITFSKLKSLSLSYLP 834 (840)
Q Consensus 807 ~~c~~l~~~~~~l~~l~~L~~L~L~~cp 834 (840)
.+|. +..+|..++++++|++|+|++.|
T Consensus 513 ~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 513 QNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred CCCc-hhhCChhhccccceeEEEecCCc
Confidence 8765 46789999999999999999987
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=2.1e-20 Score=205.68 Aligned_cols=360 Identities=20% Similarity=0.228 Sum_probs=183.0
Q ss_pred CCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCC-cccccCCCCCCEEec
Q 003192 461 CPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGD-IAVIGELKQLEILSL 539 (840)
Q Consensus 461 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L 539 (840)
+-+|++|+++.|.+ ..+|.. +..+.+|+.|+++.|.+..+|.+.+++.+|++|+|.+|.+.. |.++..+++|++|++
T Consensus 44 ~v~L~~l~lsnn~~-~~fp~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQI-SSFPIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeeEEeecccccc-ccCCch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 33455555554444 233433 444555555555555555555555555555555555555444 344555555555555
Q ss_pred cCCCCCCCcHHHhccCCCCEEecCCCCCCccccc-ccccccccc---ccCChhhhhcCCCCCeEEEEeecCc--------
Q 003192 540 SSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPP-NVERLNIER---SNASLDELKHLSRLTTLEIHIQGAK-------- 607 (840)
Q Consensus 540 ~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~-~l~~L~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~-------- 607 (840)
++|.+..+|.-+..++.+..++.++|.++..++. .+..+++.. .+..+.++..+.. .|+++.|.+.
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhcc
Confidence 5555555555444444444444444322222221 111111110 0111122222222 2444444433
Q ss_pred -------------cCCCccccccCcEEEEEEcCcCC--cCCCCCCccEEEEeecCcccchhhHHHhhcccceeeeccccc
Q 003192 608 -------------ILPRGLFSKKLERYKILIGDEWD--WHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQD 672 (840)
Q Consensus 608 -------------~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 672 (840)
.+.. .-.+|+.|....+.... .......++.+.++.+....+|.|+.. +.+|+.|....+..
T Consensus 200 ~l~~l~c~rn~ls~l~~--~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~-~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEI--SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGA-CANLEALNANHNRL 276 (1081)
T ss_pred chhhhhhhhcccceEEe--cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHh-cccceEecccchhH
Confidence 1110 12233333333322111 123344566666666777777755544 56666666555432
Q ss_pred ----------------------chhhcccccccccCCCcEEEeecCCCcceeecCCC---------------------Cc
Q 003192 673 ----------------------VKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVE---------------------GV 709 (840)
Q Consensus 673 ----------------------~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~---------------------~~ 709 (840)
++.++..+ .++.+|++|+|..+. +..+++.+. ..
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~l--e~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELEYIPPFL--EGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhhhCCCcc--cccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 23333333 567888888887753 444442211 11
Q ss_pred cCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccc--
Q 003192 710 ACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGT-- 787 (840)
Q Consensus 710 ~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-- 787 (840)
....++.|+.|.+.+ +.+++-+ -.....+++|+.|++++ ++|.++|. ..+.+++.|++|++++ +.|+.++..
T Consensus 354 ~e~~~~~Lq~Lylan-N~Ltd~c--~p~l~~~~hLKVLhLsy-NrL~~fpa-s~~~kle~LeeL~LSG-NkL~~Lp~tva 427 (1081)
T KOG0618|consen 354 EENNHAALQELYLAN-NHLTDSC--FPVLVNFKHLKVLHLSY-NRLNSFPA-SKLRKLEELEELNLSG-NKLTTLPDTVA 427 (1081)
T ss_pred cchhhHHHHHHHHhc-Ccccccc--hhhhccccceeeeeecc-cccccCCH-HHHhchHHhHHHhccc-chhhhhhHHHH
Confidence 223455566666665 3343322 12345688899999998 67888765 5678888899999988 466655321
Q ss_pred -------------cccccccchhhcccccccccccccccccccCcccccccceeecCCCCCc
Q 003192 788 -------------EEERISSNQEIELITPRGIQKCSLTAEAATNEITFSKLKSLSLSYLPSL 836 (840)
Q Consensus 788 -------------~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~cp~L 836 (840)
....++.+..++.|+.++++.|......-.....-|+|++|++++.+.+
T Consensus 428 ~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 1112334556677888888877654322222222388999999988754
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=3.6e-20 Score=203.90 Aligned_cols=346 Identities=21% Similarity=0.262 Sum_probs=202.6
Q ss_pred ccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCc
Q 003192 442 CTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 442 ~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~ 520 (840)
+.+|++++|.+..+|..+ .+++|+.|.++.|.+ ..+|.+ ..+++.|++|+|.+|.+..+|.++..+++|++|++++|
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i-~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI-RSVPSS-CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhH-hhCchh-hhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 677788888877777766 677888888877766 345543 67788888888888888788888888888888888777
Q ss_pred ccCC-cccccCC----------------------------------------CCCCE-EeccCCCCCCCcHHHhcc----
Q 003192 521 VLGD-IAVIGEL----------------------------------------KQLEI-LSLSSSDIEHLPREIGRL---- 554 (840)
Q Consensus 521 ~l~~-~~~i~~L----------------------------------------~~L~~-L~L~~~~l~~lp~~i~~L---- 554 (840)
.+.. |..+..+ .+|+. |+|++|.+..+ .+.++
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~--dls~~~~l~ 202 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL--DLSNLANLE 202 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh--hhhhccchh
Confidence 6543 2111111 12222 55555544411 11111
Q ss_pred ----------------CCCCEEecCCCCCC----cccccccccccccccc--CChhhhhcCCCCCeEEEEeecCccCCCc
Q 003192 555 ----------------SKLRLLDLTNCSKL----KSIPPNVERLNIERSN--ASLDELKHLSRLTTLEIHIQGAKILPRG 612 (840)
Q Consensus 555 ----------------~~L~~L~l~~c~~l----~~lp~~l~~L~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 612 (840)
++|+.|+...|... ...|..+..+.++.+. ..+..++.+.+|+.+.+..|.+..+|..
T Consensus 203 ~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r 282 (1081)
T KOG0618|consen 203 VLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLR 282 (1081)
T ss_pred hhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHH
Confidence 23333333333221 2345655555443222 2235556666666666666666655554
Q ss_pred c-ccccCcEEEEEEcC---cCCcCCCCCCccEEEEeecCcccchhhHH-------------------------Hhhcccc
Q 003192 613 L-FSKKLERYKILIGD---EWDWHGKYETSRTLKLMLNTRTCLENGTI-------------------------MQLKGIE 663 (840)
Q Consensus 613 ~-~~~~L~~L~l~~~~---~~~~~~~~~~l~~l~L~~~~~~~~~~~~~-------------------------~~l~~L~ 663 (840)
+ ...+|+.|.+..++ ..........+++|.|..|....+|...+ ..++.|+
T Consensus 283 i~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred HhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 4 34444444443332 11222334445555555444444444332 2234566
Q ss_pred eeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCC
Q 003192 664 DLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCN 743 (840)
Q Consensus 664 ~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~ 743 (840)
.|++.+|.......+.+ .++.+|+.|+|++|. +..++.. ....++.|+.|.+++ ++|+.+ +.....++.
T Consensus 363 ~LylanN~Ltd~c~p~l--~~~~hLKVLhLsyNr-L~~fpas----~~~kle~LeeL~LSG-NkL~~L---p~tva~~~~ 431 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVL--VNFKHLKVLHLSYNR-LNSFPAS----KLRKLEELEELNLSG-NKLTTL---PDTVANLGR 431 (1081)
T ss_pred HHHHhcCcccccchhhh--ccccceeeeeecccc-cccCCHH----HHhchHHhHHHhccc-chhhhh---hHHHHhhhh
Confidence 66666665554444444 667788888888753 3222222 334566777788887 677777 455556777
Q ss_pred CCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccccccccccccc
Q 003192 744 LGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTA 813 (840)
Q Consensus 744 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 813 (840)
|+.|...+ +.+..+|. +..++.|+.+|++ |++|+.+...... .-+.|++|++++|..+.
T Consensus 432 L~tL~ahs-N~l~~fPe---~~~l~qL~~lDlS-~N~L~~~~l~~~~------p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 432 LHTLRAHS-NQLLSFPE---LAQLPQLKVLDLS-CNNLSEVTLPEAL------PSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred hHHHhhcC-Cceeechh---hhhcCcceEEecc-cchhhhhhhhhhC------CCcccceeeccCCcccc
Confidence 88877766 55666653 5678999999997 5788777432221 12789999999998643
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=1e-20 Score=189.12 Aligned_cols=331 Identities=19% Similarity=0.211 Sum_probs=163.8
Q ss_pred ccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCc
Q 003192 442 CTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 442 ~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~ 520 (840)
+..++..+|++..+|+.. .+.++..|.+.+|.. ..+|++.+. |+.|+.||...|-+..+|+.++.+..|..|+|+.|
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc
Confidence 334444455555555544 555555555555554 234444333 55566666555555556665666666666666665
Q ss_pred ccCCcccccCCCCCCEEeccCCCCCCCcHHHh-ccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeE
Q 003192 521 VLGDIAVIGELKQLEILSLSSSDIEHLPREIG-RLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTL 599 (840)
Q Consensus 521 ~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L 599 (840)
++..+|+|+++..|.+|+++.|.|+.+|.++. +|.+|.+||+.. ++++++|..+ .-+.+|..|
T Consensus 217 ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~---------------clLrsL~rL 280 (565)
T KOG0472|consen 217 KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEI---------------CLLRSLERL 280 (565)
T ss_pred ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHH---------------HHhhhhhhh
Confidence 55555555555555555555555555555443 455555555555 4455555422 233344444
Q ss_pred EEEeecCccCCCccccccCcEEEEEEcCc---------------------------C--------------CcCC----C
Q 003192 600 EIHIQGAKILPRGLFSKKLERYKILIGDE---------------------------W--------------DWHG----K 634 (840)
Q Consensus 600 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------------~--------------~~~~----~ 634 (840)
++++|.++.+|..+.--+|+.|.+..++. . .|.. .
T Consensus 281 DlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA 360 (565)
T ss_pred cccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence 44444444444333111333333322110 0 0000 0
Q ss_pred CCCccEEEEeecCcccchhhHHHh-------------------------hcccceeeecccccchhhcccccccccCCCc
Q 003192 635 YETSRTLKLMLNTRTCLENGTIMQ-------------------------LKGIEDLYLGELQDVKNVLNELDAEGFLQLK 689 (840)
Q Consensus 635 ~~~l~~l~L~~~~~~~~~~~~~~~-------------------------l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~ 689 (840)
.-..+.|.++.......|..++.. +..+.+.-+..++....++..+ ..+++|.
T Consensus 361 ~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l--~~l~kLt 438 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLEL--SQLQKLT 438 (565)
T ss_pred hhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHH--Hhhhcce
Confidence 011222333332333333332221 1222222222334444444444 6788888
Q ss_pred EEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhccc
Q 003192 690 HLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQ 769 (840)
Q Consensus 690 ~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~ 769 (840)
.|+++++. +..+|.+ .+.+..|+.|+|+. +.++.+ |........|+.+-.++ +.+..+++ .++.++.+
T Consensus 439 ~L~L~NN~-Ln~LP~e-----~~~lv~Lq~LnlS~-NrFr~l---P~~~y~lq~lEtllas~-nqi~~vd~-~~l~nm~n 506 (565)
T KOG0472|consen 439 FLDLSNNL-LNDLPEE-----MGSLVRLQTLNLSF-NRFRML---PECLYELQTLETLLASN-NQIGSVDP-SGLKNMRN 506 (565)
T ss_pred eeecccch-hhhcchh-----hhhhhhhheecccc-cccccc---hHHHhhHHHHHHHHhcc-ccccccCh-HHhhhhhh
Confidence 88888754 4444432 24556688888887 355555 22222233344444443 56666655 35677777
Q ss_pred CcEEEEcccccchhhccccccccccchhhcccccccccccccc
Q 003192 770 LQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLT 812 (840)
Q Consensus 770 L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 812 (840)
|..|++.+ +.+..+++ .+.++.+|++|.+.+|+.-
T Consensus 507 L~tLDL~n-Ndlq~IPp-------~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 507 LTTLDLQN-NDLQQIPP-------ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cceeccCC-CchhhCCh-------hhccccceeEEEecCCccC
Confidence 77777766 46666543 2346777777777777654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=5.6e-15 Score=169.01 Aligned_cols=263 Identities=18% Similarity=0.170 Sum_probs=174.3
Q ss_pred ccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcc
Q 003192 442 CTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 442 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~ 521 (840)
-..|+++.+.+..+|..+. ++|+.|++..|.+. .+|. .+++|++|++++|.++.+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4578888888888887553 47888888877764 4553 257788888888888877753 3577788888887
Q ss_pred cCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEE
Q 003192 522 LGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEI 601 (840)
Q Consensus 522 l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l 601 (840)
++.++. -..+|+.|++++|+++.+|. .+++|+.|++++| .+..+|.. ..+|+.|++
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l------------------p~~L~~L~L 329 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDN-QLASLPAL------------------PSELCKLWA 329 (788)
T ss_pred hhhhhh--chhhcCEEECcCCccccccc---cccccceeECCCC-ccccCCCC------------------ccccccccc
Confidence 766443 23567778888888887775 2467888888774 55556531 124566667
Q ss_pred EeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhccccc
Q 003192 602 HIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELD 681 (840)
Q Consensus 602 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 681 (840)
++|.+..+|.. ..+|+.|++++|.. +.+|..
T Consensus 330 s~N~L~~LP~l----------------------------------------------p~~Lq~LdLS~N~L-s~LP~l-- 360 (788)
T PRK15387 330 YNNQLTSLPTL----------------------------------------------PSGLQELSVSDNQL-ASLPTL-- 360 (788)
T ss_pred ccCcccccccc----------------------------------------------ccccceEecCCCcc-CCCCCC--
Confidence 66666555521 23677777777543 334332
Q ss_pred ccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccH
Q 003192 682 AEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSV 761 (840)
Q Consensus 682 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~ 761 (840)
.++|+.|++++|. +..++ ...++|+.|++++ +.++.++. ..++|+.|+++++ .++.+|..
T Consensus 361 ---p~~L~~L~Ls~N~-L~~LP--------~l~~~L~~LdLs~-N~Lt~LP~------l~s~L~~LdLS~N-~LssIP~l 420 (788)
T PRK15387 361 ---PSELYKLWAYNNR-LTSLP--------ALPSGLKELIVSG-NRLTSLPV------LPSELKELMVSGN-RLTSLPML 420 (788)
T ss_pred ---Ccccceehhhccc-cccCc--------ccccccceEEecC-CcccCCCC------cccCCCEEEccCC-cCCCCCcc
Confidence 3578888887754 33333 1235789999987 45666631 2468999999994 68887652
Q ss_pred HHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccCc
Q 003192 762 SIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNE 819 (840)
Q Consensus 762 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l 819 (840)
..+|+.|+++++ .++.++ .++.++++|..+++++|+..+..+..+
T Consensus 421 -----~~~L~~L~Ls~N-qLt~LP-------~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 -----PSGLLSLSVYRN-QLTRLP-------ESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -----hhhhhhhhhccC-cccccC-------hHHhhccCCCeEECCCCCCCchHHHHH
Confidence 356888899874 666553 223467888899999998876655443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=1.1e-14 Score=166.72 Aligned_cols=141 Identities=24% Similarity=0.227 Sum_probs=114.2
Q ss_pred ccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEe
Q 003192 438 TLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCL 517 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L 517 (840)
...+++.|++.+|.+..+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.+..+|..+ .+|+.|++
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLWI 289 (788)
T ss_pred hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---hhcCEEEC
Confidence 456799999999999999864 589999999999875 5664 2568999999999999888743 57889999
Q ss_pred cCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCC
Q 003192 518 DQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT 597 (840)
Q Consensus 518 ~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~ 597 (840)
++|.++.++. .+++|++|++++|+++.+|.. ..+|+.|++++ +.++.+|. + ..+|+
T Consensus 290 s~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~----------------l--p~~Lq 345 (788)
T PRK15387 290 FGNQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYN-NQLTSLPT----------------L--PSGLQ 345 (788)
T ss_pred cCCccccccc--cccccceeECCCCccccCCCC---ccccccccccc-Cccccccc----------------c--ccccc
Confidence 9999988654 357899999999999998863 34688889988 46677774 1 14799
Q ss_pred eEEEEeecCccCCCc
Q 003192 598 TLEIHIQGAKILPRG 612 (840)
Q Consensus 598 ~L~l~~~~~~~~~~~ 612 (840)
.|++++|.+..+|..
T Consensus 346 ~LdLS~N~Ls~LP~l 360 (788)
T PRK15387 346 ELSVSDNQLASLPTL 360 (788)
T ss_pred eEecCCCccCCCCCC
Confidence 999999999988753
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=8.1e-17 Score=142.82 Aligned_cols=158 Identities=25% Similarity=0.416 Sum_probs=123.6
Q ss_pred ccccccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEE
Q 003192 438 TLKFCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLC 516 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 516 (840)
....+++|.+++|.+..+|..+ ++.+|+.|.+++|++ .++|.+ ++.+++||.|+++-|.+..+|..|+.++-|+.||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 3456778888888888887776 788888888887776 466665 7788888888888888888888888888888888
Q ss_pred ecCcccCC---cccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcC
Q 003192 517 LDQSVLGD---IAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHL 593 (840)
Q Consensus 517 L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l 593 (840)
|.+|.+.. |..|..+..|+-|+|+.|.+..+|..+++|++|+.|.+.. +.+-++|. +++.+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpk---------------eig~l 172 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPK---------------EIGDL 172 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcH---------------HHHHH
Confidence 88888765 5567777888888888888888888888888888888887 44555665 45677
Q ss_pred CCCCeEEEEeecCccCCCcc
Q 003192 594 SRLTTLEIHIQGAKILPRGL 613 (840)
Q Consensus 594 ~~L~~L~l~~~~~~~~~~~~ 613 (840)
+.|+.|+|.+|.++.+|+.+
T Consensus 173 t~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHhcccceeeecChhh
Confidence 88888888888888888764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=2e-14 Score=165.77 Aligned_cols=142 Identities=18% Similarity=0.341 Sum_probs=97.2
Q ss_pred cccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCc
Q 003192 441 FCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 441 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~ 520 (840)
+...|.++++.+..+|..+ .++|+.|++++|.+. .+|..++ ++|++|++++|.++.+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 4567888888888777654 256888888888764 5666533 478888888888888877553 46888888888
Q ss_pred ccCCc-ccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeE
Q 003192 521 VLGDI-AVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTL 599 (840)
Q Consensus 521 ~l~~~-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L 599 (840)
.+..+ ..+. .+|++|++++|+++.+|..+. .+|++|++++| .++.+|..+ .++|+.|
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-----------------p~sL~~L 309 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAHL-----------------PSGITHL 309 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcccc-----------------hhhHHHH
Confidence 87764 3332 467888888888887776553 47888888774 566666422 1256667
Q ss_pred EEEeecCccCCC
Q 003192 600 EIHIQGAKILPR 611 (840)
Q Consensus 600 ~l~~~~~~~~~~ 611 (840)
++++|.+..+|.
T Consensus 310 ~Ls~N~Lt~LP~ 321 (754)
T PRK15370 310 NVQSNSLTALPE 321 (754)
T ss_pred HhcCCccccCCc
Confidence 777777666554
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=6.5e-16 Score=137.14 Aligned_cols=141 Identities=32% Similarity=0.531 Sum_probs=129.1
Q ss_pred cccccccccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCC--CCchhhhcccC
Q 003192 435 DKDTLKFCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLL--SLPSSLHLLVN 511 (840)
Q Consensus 435 ~~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~L~~ 511 (840)
....+.+++.|.+.+|.++++|..+ .+++||.|.+..|.+ ..+|.. |+.++.|++|||++|++. .+|..|..+..
T Consensus 51 nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl-~~lprg-fgs~p~levldltynnl~e~~lpgnff~m~t 128 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL-NILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYMTT 128 (264)
T ss_pred cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh-hcCccc-cCCCchhhhhhccccccccccCCcchhHHHH
Confidence 4456789999999999999999988 999999999998876 456766 899999999999999987 78999999999
Q ss_pred CcEEEecCcccCC-cccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCcccccccccc
Q 003192 512 LRTLCLDQSVLGD-IAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERL 578 (840)
Q Consensus 512 L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L 578 (840)
||.|.|+.|.++. |+.+++|++||.|.++.|.+-++|.+++.|+.|+.|++.+ +.++.+|+.++.+
T Consensus 129 lralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l 195 (264)
T KOG0617|consen 129 LRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANL 195 (264)
T ss_pred HHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhh
Confidence 9999999999988 7889999999999999999999999999999999999999 7899999977765
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.3e-13 Score=159.19 Aligned_cols=249 Identities=19% Similarity=0.206 Sum_probs=165.3
Q ss_pred CceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCcc-cccCCCCCCEEeccC
Q 003192 463 QLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDIA-VIGELKQLEILSLSS 541 (840)
Q Consensus 463 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~-~i~~L~~L~~L~L~~ 541 (840)
+...|.+.++++. .+|..+ .+.|+.|++++|.++.+|..+. .+|++|++++|.++.++ .+ ..+|+.|+|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcC
Confidence 4567777777653 466542 2468888888888888887654 58888888888877743 23 24788888888
Q ss_pred CCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEE
Q 003192 542 SDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERY 621 (840)
Q Consensus 542 ~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L 621 (840)
|++..+|..+. .+|+.|++++ +.+..+|..+ .++|+.|++++|.++.+|..+
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l-----------------~~sL~~L~Ls~N~Lt~LP~~l-------- 302 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFH-NKISCLPENL-----------------PEELRYLSVYDNSIRTLPAHL-------- 302 (754)
T ss_pred CccCcCChhHh--CCCCEEECcC-CccCcccccc-----------------CCCCcEEECCCCccccCcccc--------
Confidence 88888887664 5788888886 5666777532 136888888877766555321
Q ss_pred EEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcce
Q 003192 622 KILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILC 701 (840)
Q Consensus 622 ~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~ 701 (840)
.++|+.|++++|... .++..+ .++|+.|++++|. +..
T Consensus 303 -------------------------------------p~sL~~L~Ls~N~Lt-~LP~~l----~~sL~~L~Ls~N~-Lt~ 339 (754)
T PRK15370 303 -------------------------------------PSGITHLNVQSNSLT-ALPETL----PPGLKTLEAGENA-LTS 339 (754)
T ss_pred -------------------------------------hhhHHHHHhcCCccc-cCCccc----cccceeccccCCc-ccc
Confidence 135667777765433 333322 4789999999875 444
Q ss_pred eecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccc
Q 003192 702 IVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSM 781 (840)
Q Consensus 702 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 781 (840)
++. ..+++|+.|+++++ ++..++ . ...++|+.|+|++| +|+.+|+. . .++|+.|++++| ++
T Consensus 340 LP~-------~l~~sL~~L~Ls~N-~L~~LP---~--~lp~~L~~LdLs~N-~Lt~LP~~-l---~~sL~~LdLs~N-~L 400 (754)
T PRK15370 340 LPA-------SLPPELQVLDVSKN-QITVLP---E--TLPPTITTLDVSRN-ALTNLPEN-L---PAALQIMQASRN-NL 400 (754)
T ss_pred CCh-------hhcCcccEEECCCC-CCCcCC---h--hhcCCcCEEECCCC-cCCCCCHh-H---HHHHHHHhhccC-Cc
Confidence 432 22478999999985 466553 2 22468999999996 68888762 2 247889999985 56
Q ss_pred hhhccccccccccchhhcccccccccccccc
Q 003192 782 EVILGTEEERISSNQEIELITPRGIQKCSLT 812 (840)
Q Consensus 782 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 812 (840)
..++.. .. ......+.+..+.+.+|+..
T Consensus 401 ~~LP~s-l~--~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 401 VRLPES-LP--HFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ccCchh-HH--HHhhcCCCccEEEeeCCCcc
Confidence 655321 10 11123466778888888764
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.36 E-value=5.9e-13 Score=156.08 Aligned_cols=318 Identities=23% Similarity=0.278 Sum_probs=197.8
Q ss_pred CCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCc--CCCCchh-hhcccCCcEEEecCcc-cCC-c
Q 003192 451 DVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMH--LLSLPSS-LHLLVNLRTLCLDQSV-LGD-I 525 (840)
Q Consensus 451 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~~-i~~L~~L~~L~L~~~~-l~~-~ 525 (840)
.....|...+....|.+.+.+|.+. .++.. ...+.|+.|-+.+|. +..++.. |..++.|++|||++|. +.. |
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred CccccccccchhheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 4444666567788899999888763 33332 355689999999986 6666654 7779999999999987 555 7
Q ss_pred ccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeec
Q 003192 526 AVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQG 605 (840)
Q Consensus 526 ~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 605 (840)
.+|++|.+||+|+++++.++.+|.++++|.+|.+|++..+..+..+|. + +..+.+|++|.+....
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i--------------~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-I--------------LLELQSLRVLRLPRSA 653 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-h--------------hhhcccccEEEeeccc
Confidence 889999999999999999999999999999999999998776666543 2 4568899999987544
Q ss_pred CccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhccccccccc
Q 003192 606 AKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGF 685 (840)
Q Consensus 606 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l 685 (840)
...-...+ . -...+.+|+.+....... .+...+ ..+
T Consensus 654 ~~~~~~~l--~--------------------------------------el~~Le~L~~ls~~~~s~--~~~e~l--~~~ 689 (889)
T KOG4658|consen 654 LSNDKLLL--K--------------------------------------ELENLEHLENLSITISSV--LLLEDL--LGM 689 (889)
T ss_pred cccchhhH--H--------------------------------------hhhcccchhhheeecchh--HhHhhh--hhh
Confidence 11000000 0 001123333333322111 011111 122
Q ss_pred CCCc----EEEeecCCCcceeecCCCCccCCCCCccceecccccccccccc--ccccCccc-CCCCCEEEEecCCCCccc
Q 003192 686 LQLK----HLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKIC--NGRLTAAS-FCNLGIIKVGNCNKLKSI 758 (840)
Q Consensus 686 ~~L~----~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~~~~~~~~-l~~L~~L~l~~C~~L~~l 758 (840)
+.|. .+.+.+|..- .. ......+++|+.|.+.+|...+... ........ |++|..+.+.+|..++.+
T Consensus 690 ~~L~~~~~~l~~~~~~~~-~~-----~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCSKR-TL-----ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred HHHHHHhHhhhhcccccc-ee-----ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 2222 2222222211 11 1134678999999999987654321 11111222 788999999999988887
Q ss_pred ccHHHhhhcccCcEEEEcccccchhhcccccccc--c-cchhhcccccc-cccccccccccccCcccccccceeecCCCC
Q 003192 759 LSVSIARGLQQLQVIDVTECKSMEVILGTEEERI--S-SNQEIELITPR-GIQKCSLTAEAATNEITFSKLKSLSLSYLP 834 (840)
Q Consensus 759 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~--~-~~~~l~~L~~L-~l~~c~~l~~~~~~l~~l~~L~~L~L~~cp 834 (840)
.+ ....|+|+.|.+.+|+.++++++...... . ......++..+ .+.+...+.++-..-..++.|+.+.+..||
T Consensus 764 ~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p 840 (889)
T KOG4658|consen 764 TW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECP 840 (889)
T ss_pred ch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCc
Confidence 54 34569999999999999998876543300 0 01112233333 233333333222222245669999999999
Q ss_pred CccCC
Q 003192 835 SLTSF 839 (840)
Q Consensus 835 ~L~~l 839 (840)
++.++
T Consensus 841 ~l~~~ 845 (889)
T KOG4658|consen 841 KLGKL 845 (889)
T ss_pred ccccC
Confidence 98864
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=9e-11 Score=144.58 Aligned_cols=293 Identities=13% Similarity=0.175 Sum_probs=175.7
Q ss_pred CcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHh
Q 003192 82 GYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADEL 160 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l 160 (840)
....++-|..-.+.+-+ ....+++.|.|++|.||||++.+.... ++.++|+++.. +.++..+...++..+
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 34456677654444432 235689999999999999999998753 33689999964 446677777777776
Q ss_pred CCCccc--------------cChhhHHHHHHHHHHc-CCcEEEEEcccccccC--cc-ccCCccCCCCCCcEEEEeeCCc
Q 003192 161 GLFLCE--------------ESESGRARRLYARMKE-EKKILVILDDIWARLD--LE-TLGIPLGDEHKGCKVLLTSRSR 222 (840)
Q Consensus 161 ~~~~~~--------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~--~~-~l~~~l~~~~~gs~iliTtR~~ 222 (840)
+..... .........+...+.. +.+++|||||+...++ .. .+...+.....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 421111 0111223344444443 6789999999976431 11 2222222334567888999984
Q ss_pred chhhc-cc-CccceEEcc----CCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhccCHHH
Q 003192 223 GVLSR-EM-DSEINFLVG----ILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREENLFE 296 (840)
Q Consensus 223 ~v~~~-~~-~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~ 296 (840)
.-... .. -.....+++ +|+.+|+.++|.... +. +-..+.+..|++.|+|.|+++..++..++.....
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~--~~----~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~- 235 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL--SS----PIEAAESSRLCDDVEGWATALQLIALSARQNNSS- 235 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc--CC----CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-
Confidence 22110 00 012244555 999999999997652 21 2235567899999999999999988777543210
Q ss_pred HHHHHHHhcCCCCCCCcchhhhhhhhh-hccccCCCchhhHHHHHHhhccCCcCCCCHHHHHHHHhhcccccccccHHHH
Q 003192 297 WKNALLELKRPSWRNFSGVQAAACSTI-ELSFNFLTGEDLKSTLLLCSLMGYTYHASMLDLLKYGMGMGLFKDVNTMEEA 375 (840)
Q Consensus 297 w~~~l~~l~~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~ 375 (840)
-......+... ....+...+ .-.++.||++ .+..+...|+++. ++.+ +... +..
T Consensus 236 ~~~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~---~~~~-l~~~-----l~~-------- 290 (903)
T PRK04841 236 LHDSARRLAGI-------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRS---MNDA-LIVR-----VTG-------- 290 (903)
T ss_pred hhhhhHhhcCC-------CchhHHHHHHHHHHhcCCHH-HHHHHHHhccccc---CCHH-HHHH-----HcC--------
Confidence 00111111100 011233322 2237799998 8999999999873 3322 2211 111
Q ss_pred HHhHHHHHHHhhhcccccc-c-ccCCcEEechHHHHHHHHHh
Q 003192 376 RDRACPLVHKLKACSLLLD-S-HISEMFAMHDIVRDVAISIA 415 (840)
Q Consensus 376 ~~~~~~~~~~L~~~~l~~~-~-~~~~~~~mHdlv~~~~~~i~ 415 (840)
.+.....+++|.+.+++.. . +....|+.|++++++.....
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1112457888888888653 2 23457999999999987764
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=1.2e-13 Score=138.89 Aligned_cols=240 Identities=18% Similarity=0.264 Sum_probs=159.4
Q ss_pred cccccccEEeecccCCCCCCCcC--CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecC-CcCCCCch-hhhcccCC
Q 003192 437 DTLKFCTAISLHKCDVNELPEEL--ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTK-MHLLSLPS-SLHLLVNL 512 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~-~i~~L~~L 512 (840)
+.+.....+.+..|.++.+|... .+++||.|+|+.|.++. +.+..|.+++.|-.|-+.+ |.|+.+|. .|++|..|
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 34556677777778888777654 77788888888777754 3334477777766655554 77777776 67778888
Q ss_pred cEEEecCcccCCc--ccccCCCCCCEEeccCCCCCCCcH-HHhccCCCCEEecCCCCCCc--ccc----------ccccc
Q 003192 513 RTLCLDQSVLGDI--AVIGELKQLEILSLSSSDIEHLPR-EIGRLSKLRLLDLTNCSKLK--SIP----------PNVER 577 (840)
Q Consensus 513 ~~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~--~lp----------~~l~~ 577 (840)
+.|.+.-|.+.-+ ..+..|++|..|.+..|.+..++. .+..+.+++++.+..+..+. .+| ...+-
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 8888777777663 557778888888888887777776 56777777877776654211 111 11110
Q ss_pred c-----------------------c-------ccc----c-cCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEE
Q 003192 578 L-----------------------N-------IER----S-NASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYK 622 (840)
Q Consensus 578 L-----------------------~-------~~~----~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 622 (840)
. . ... . .....-|+.|++|++|++++|.++.+.+..
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a--------- 293 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA--------- 293 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh---------
Confidence 0 0 000 0 011233678889999999999888776652
Q ss_pred EEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCC
Q 003192 623 ILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSP 697 (840)
Q Consensus 623 l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 697 (840)
+.....++.|.|..|....+...++..+..|+.|+|.+|+...-.+..+ ..+.+|.+|.+-.++
T Consensus 294 ---------Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 294 ---------FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNP 357 (498)
T ss_pred ---------hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehccCc
Confidence 3334455556666677777777888888888888888877665555544 667778888886654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=1.8e-13 Score=137.65 Aligned_cols=275 Identities=20% Similarity=0.250 Sum_probs=169.8
Q ss_pred cCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEEEecC-cccCCc--
Q 003192 450 CDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLDQ-SVLGDI-- 525 (840)
Q Consensus 450 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~-~~l~~~-- 525 (840)
..+.++|..+. +....+.|..|.+ ..+|+..|+.+++||.|||++|.|+.+ |..|..|.+|-.|-+-+ |+|+.+
T Consensus 56 ~GL~eVP~~LP-~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANLP-PETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccCC-CcceEEEeccCCc-ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 34566666442 3567889999988 578999999999999999999999977 78999999988777666 889995
Q ss_pred ccccCCCCCCEEeccCCCCCCCc-HHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEee
Q 003192 526 AVIGELKQLEILSLSSSDIEHLP-REIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQ 604 (840)
Q Consensus 526 ~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~ 604 (840)
..|++|..|+.|.+.-|.+..++ ..+..|++|..|.+.. +.+..++.+ .+..+..++++.+..|
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~--------------tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKG--------------TFQGLAAIKTLHLAQN 198 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccc--------------cccchhccchHhhhcC
Confidence 44999999999999999999665 4588999999999998 567777652 2344555555555443
Q ss_pred cCccC-------------CCcc-ccc-----cCcEEEEEEcCcCCcCCCCCC-ccEEEEeecCcccchhhHHHhhcccce
Q 003192 605 GAKIL-------------PRGL-FSK-----KLERYKILIGDEWDWHGKYET-SRTLKLMLNTRTCLENGTIMQLKGIED 664 (840)
Q Consensus 605 ~~~~~-------------~~~~-~~~-----~L~~L~l~~~~~~~~~~~~~~-l~~l~L~~~~~~~~~~~~~~~l~~L~~ 664 (840)
.+... |... .+. .|..-.+..-+...+...... ...+....+.....|..-+..+++|++
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence 31110 0000 000 000000000000000000000 000111111222334445667888888
Q ss_pred eeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCC
Q 003192 665 LYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNL 744 (840)
Q Consensus 665 L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L 744 (840)
|++++|.....-..++ .+...++.|+|..++ ++.+. ...+.++..|+.|+|.+ ++++.+.++. +..+.+|
T Consensus 279 lnlsnN~i~~i~~~aF--e~~a~l~eL~L~~N~-l~~v~----~~~f~~ls~L~tL~L~~-N~it~~~~~a--F~~~~~l 348 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAF--EGAAELQELYLTRNK-LEFVS----SGMFQGLSGLKTLSLYD-NQITTVAPGA--FQTLFSL 348 (498)
T ss_pred eccCCCccchhhhhhh--cchhhhhhhhcCcch-HHHHH----HHhhhccccceeeeecC-CeeEEEeccc--cccccee
Confidence 8888876655545555 677788888887754 33321 12345667778888877 5666664332 3345567
Q ss_pred CEEEEec
Q 003192 745 GIIKVGN 751 (840)
Q Consensus 745 ~~L~l~~ 751 (840)
.+|++-.
T Consensus 349 ~~l~l~~ 355 (498)
T KOG4237|consen 349 STLNLLS 355 (498)
T ss_pred eeeehcc
Confidence 7777655
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.26 E-value=7.1e-10 Score=115.54 Aligned_cols=184 Identities=19% Similarity=0.207 Sum_probs=116.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHH----
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYA---- 178 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~---- 178 (840)
....++.|+|++|+||||+++.+++...... + .+.|+ +....+..+++..|...++..............+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999998876331 1 12333 334457788999999998876543332233333332
Q ss_pred HHHcCCcEEEEEccccccc--CccccCC---ccCCCCCCcEEEEeeCCcch--hh------cccCccceEEccCCCHHHH
Q 003192 179 RMKEEKKILVILDDIWARL--DLETLGI---PLGDEHKGCKVLLTSRSRGV--LS------REMDSEINFLVGILSQEES 245 (840)
Q Consensus 179 ~l~~~k~~LlVlDdv~~~~--~~~~l~~---~l~~~~~gs~iliTtR~~~v--~~------~~~~~~~~~~l~~L~~~~~ 245 (840)
....+++.++|+||++... .++.+.. .-........|++|....-. .. ........+.+++++.++.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2335788999999998753 3333321 11112223345565543211 00 0011133678999999999
Q ss_pred HHHHHHHHhcCCCC-CCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 246 WSLFQKMVAEGDCI-RNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 246 ~~lf~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
.+++...+...+.. ...-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99998775432211 122346789999999999999999988776
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=7.3e-12 Score=134.40 Aligned_cols=100 Identities=22% Similarity=0.234 Sum_probs=58.8
Q ss_pred EEecCCCCCCCCChhhhcCCCceeEEEecCCcCC-----CCchhhhcccCCcEEEecCcccCC--------cccccCCCC
Q 003192 467 FYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLL-----SLPSSLHLLVNLRTLCLDQSVLGD--------IAVIGELKQ 533 (840)
Q Consensus 467 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~L~~L~~L~L~~~~l~~--------~~~i~~L~~ 533 (840)
|+|..+.+...--...|..+..|++|+++++.++ .++..+...++|++|+++++.+.. +..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 3444444432222344666667777777777763 345556666677777777776552 133556667
Q ss_pred CCEEeccCCCCC-CCcHHHhccCC---CCEEecCCCC
Q 003192 534 LEILSLSSSDIE-HLPREIGRLSK---LRLLDLTNCS 566 (840)
Q Consensus 534 L~~L~L~~~~l~-~lp~~i~~L~~---L~~L~l~~c~ 566 (840)
|+.|++++|.+. ..+..+..+.+ |++|++++|.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 777777777665 34444444444 7777777653
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.20 E-value=8e-11 Score=120.04 Aligned_cols=195 Identities=19% Similarity=0.278 Sum_probs=105.0
Q ss_pred ccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHH---------HH
Q 003192 86 FDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQG---------QI 156 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---------~i 156 (840)
|+||++++++|.+++..+....+.|+|+.|+|||+|++.+.+...... + .++|+..........+.. .+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 789999999999998876678999999999999999999999874321 1 344554444332222111 11
Q ss_pred HHHh----CCC-c------cccChhhHHHHHHHHHHc-CCcEEEEEccccccc-Ccc-------ccCCccCC--CCCCcE
Q 003192 157 ADEL----GLF-L------CEESESGRARRLYARMKE-EKKILVILDDIWARL-DLE-------TLGIPLGD--EHKGCK 214 (840)
Q Consensus 157 ~~~l----~~~-~------~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~~~-------~l~~~l~~--~~~gs~ 214 (840)
.+.+ ... . ...........+.+.+.+ +++++||+||+.... ... .+...+.. ......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 1112 110 0 001122345556666553 346999999997665 111 11111111 123334
Q ss_pred EEEeeCCcchhhc-------ccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 215 VLLTSRSRGVLSR-------EMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 215 iliTtR~~~v~~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
+|++.....+... ..+....+.+++|+.+++++++...+-.. ... +..++..++|+..+||+|..|..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 5555444333211 12333459999999999999999863222 111 23466779999999999998764
No 28
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.16 E-value=2.3e-09 Score=118.38 Aligned_cols=292 Identities=17% Similarity=0.109 Sum_probs=164.0
Q ss_pred CcccccchHHHHHHHHHHhC----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 82 GYQAFDSRISTFKDITNALS----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.+..+.||+++++++...+. ......+.|+|++|+|||++++.++++.......-.+++++.....+...++..|.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 34568999999999998874 23446688999999999999999999886553223456777777778888999999
Q ss_pred HHhCCC-cc--ccChhhHHHHHHHHHHc-CCcEEEEEccccccc------CccccCCccCCCCCCc--EEEEeeCCcchh
Q 003192 158 DELGLF-LC--EESESGRARRLYARMKE-EKKILVILDDIWARL------DLETLGIPLGDEHKGC--KVLLTSRSRGVL 225 (840)
Q Consensus 158 ~~l~~~-~~--~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~gs--~iliTtR~~~v~ 225 (840)
+++... .. ..+..+....+.+.+.+ +++.+||||+++... .+..+...+. ...++ .+|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchh
Confidence 988652 11 11223344555555553 456899999998643 1222221111 11232 356666654432
Q ss_pred hcc------cCccceEEccCCCHHHHHHHHHHHHhcC--C-CCCCcchHHHHHHHHHHcCCChHHHHHHHHHHh-----c
Q 003192 226 SRE------MDSEINFLVGILSQEESWSLFQKMVAEG--D-CIRNHDLQSLAVAIAKECAGLPIAIVTIAKALR-----E 291 (840)
Q Consensus 226 ~~~------~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~-~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~-----~ 291 (840)
... .-....+.+++++.++..+++..++..+ . ...+...+.+++......|..+.|+.++-.+.. +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 110 0112467899999999999999875322 1 112222233333333334557777777644321 1
Q ss_pred c---CHHHHHHHHHHhcCCCCCCCcchhhhhhhhhhccccCCCchhhHHHHHHh-h-ccCC-cCCCCHHHHHHH--Hhhc
Q 003192 292 E---NLFEWKNALLELKRPSWRNFSGVQAAACSTIELSFNFLTGEDLKSTLLLC-S-LMGY-TYHASMLDLLKY--GMGM 363 (840)
Q Consensus 292 ~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~-a-~fp~-~~~~~~~~li~~--wiae 363 (840)
. +.+..+.+.+... .....-.+..||.+ +..++++ + .... ...+...++... .+++
T Consensus 267 ~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred CCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 1 4445555554431 11223357788887 3444432 2 1211 133455554432 2222
Q ss_pred ccccccccHHHHHHhHHHHHHHhhhcccccc
Q 003192 364 GLFKDVNTMEEARDRACPLVHKLKACSLLLD 394 (840)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 394 (840)
.+-.... .......+++.|...+++..
T Consensus 331 ~~~~~~~----~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 331 ELGYEPR----THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HcCCCcC----cHHHHHHHHHHHHhcCCeEE
Confidence 1110000 12334567888888888863
No 29
>PF05729 NACHT: NACHT domain
Probab=99.12 E-value=4.6e-10 Score=107.57 Aligned_cols=142 Identities=24% Similarity=0.331 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCcEEEEEeCCCccHH---HHHHHHHHHhCCCccccChhhHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKL----FDEVVFVDVPQIPDIK---KMQGQIADELGLFLCEESESGRARRLYA 178 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 178 (840)
+++.|+|.+|+||||+++.++.+...... +...+|+..+...... .+...|..+....... .......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 58999999999999999999998876643 3456677665544332 3444444433221111 1112223
Q ss_pred HHHcCCcEEEEEcccccccC---------ccccC-CccCC-CCCCcEEEEeeCCcch--hhcccCccceEEccCCCHHHH
Q 003192 179 RMKEEKKILVILDDIWARLD---------LETLG-IPLGD-EHKGCKVLLTSRSRGV--LSREMDSEINFLVGILSQEES 245 (840)
Q Consensus 179 ~l~~~k~~LlVlDdv~~~~~---------~~~l~-~~l~~-~~~gs~iliTtR~~~v--~~~~~~~~~~~~l~~L~~~~~ 245 (840)
.....+++++|+|++++... +..+. ..+.. ..++.+++||+|.... ..........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 33457899999999976532 11111 11222 3568999999999876 222234446899999999999
Q ss_pred HHHHHHH
Q 003192 246 WSLFQKM 252 (840)
Q Consensus 246 ~~lf~~~ 252 (840)
.+++.++
T Consensus 156 ~~~~~~~ 162 (166)
T PF05729_consen 156 KQYLRKY 162 (166)
T ss_pred HHHHHHH
Confidence 9999887
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.07 E-value=3.8e-09 Score=117.85 Aligned_cols=292 Identities=18% Similarity=0.185 Sum_probs=183.2
Q ss_pred cccccchHHHHHHHHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC-ccHHHHHHHHHHHh
Q 003192 83 YQAFDSRISTFKDITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI-PDIKKMQGQIADEL 160 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l 160 (840)
+...+-|. ++++.|.+ .+.+.+.|..++|.||||++.+....... =..+.|.+.... .++..+...++..+
T Consensus 18 ~~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHH
Confidence 44455564 55556654 36899999999999999999999873332 346999988664 47889999999888
Q ss_pred CCCccccCh--------------hhHHHHHHHHHHc-CCcEEEEEccccccc--Cc-cccCCccCCCCCCcEEEEeeCCc
Q 003192 161 GLFLCEESE--------------SGRARRLYARMKE-EKKILVILDDIWARL--DL-ETLGIPLGDEHKGCKVLLTSRSR 222 (840)
Q Consensus 161 ~~~~~~~~~--------------~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~~-~~l~~~l~~~~~gs~iliTtR~~ 222 (840)
+.-.+...+ ......++..+.. .++..+||||..-.. .+ ..+...+.....+-..|||||+.
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 643322211 1233444444432 467899999975332 12 22333344455688899999997
Q ss_pred chhhc-ccC-ccceEEcc----CCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhcc-CHH
Q 003192 223 GVLSR-EMD-SEINFLVG----ILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREE-NLF 295 (840)
Q Consensus 223 ~v~~~-~~~-~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~-~~~ 295 (840)
.-..- .+. .....+++ .++.+|+.++|... ++ .+-....++.+.+..+|=+-|+..++=.+++. +.+
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~--~~----l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR--GS----LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc--CC----CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 43210 000 11122332 48899999999877 21 23335568899999999999999988777732 333
Q ss_pred HHHHHHHHhcCCCCCCCcchhhhhhh-hhhccccCCCchhhHHHHHHhhccCCcCCCCHHHHHHHHhhcccccccccHHH
Q 003192 296 EWKNALLELKRPSWRNFSGVQAAACS-TIELSFNFLTGEDLKSTLLLCSLMGYTYHASMLDLLKYGMGMGLFKDVNTMEE 374 (840)
Q Consensus 296 ~w~~~l~~l~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~ 374 (840)
.--..+.. ...-+.. ...--++.||++ ++.+++-||+++.-. .+|...- .
T Consensus 245 q~~~~LsG-----------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~----~eL~~~L-------------t 295 (894)
T COG2909 245 QSLRGLSG-----------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN----DELCNAL-------------T 295 (894)
T ss_pred HHhhhccc-----------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh----HHHHHHH-------------h
Confidence 22222211 1111110 112236789998 899999999987411 1222111 0
Q ss_pred HHHhHHHHHHHhhhcccccc--cccCCcEEechHHHHHHHHHhh
Q 003192 375 ARDRACPLVHKLKACSLLLD--SHISEMFAMHDIVRDVAISIAS 416 (840)
Q Consensus 375 ~~~~~~~~~~~L~~~~l~~~--~~~~~~~~mHdlv~~~~~~i~~ 416 (840)
.++.+...+++|.+++++.. .++...|+.|.++.||-+.--.
T Consensus 296 g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 296 GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 12345568899999998852 3567899999999999865543
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.04 E-value=2.7e-08 Score=105.64 Aligned_cols=273 Identities=15% Similarity=0.078 Sum_probs=146.1
Q ss_pred cccccchHHHHHHHHHHhC-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 83 YQAFDSRISTFKDITNALS-----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
..+|+|+++.++++..++. ......+.++|++|+|||+||+.+++..... + ..+..+.......+. ..+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHH-HHH
Confidence 4579999999999988886 2335568899999999999999999987543 2 222222111222222 222
Q ss_pred HHhCCCc----c--ccChhhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcchhhcccC-
Q 003192 158 DELGLFL----C--EESESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLSREMD- 230 (840)
Q Consensus 158 ~~l~~~~----~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v~~~~~~- 230 (840)
..++... + +.-.......+...+. +.+..+|+|+..+...+.. .++ +.+-|..||+...+......
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 2232111 0 0000111222333333 3456667776655444331 111 24556667776544321111
Q ss_pred ccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhccCHHHHHHHHHHhcCCCCC
Q 003192 231 SEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREENLFEWKNALLELKRPSWR 310 (840)
Q Consensus 231 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~ 310 (840)
....+++++++.++..+++.+.+...+. .-..+....|++.|+|.|..+..++..+ |..+.. ......
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~-~~~~~i- 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQV-RGQKII- 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHH-cCCCCc-
Confidence 1246799999999999999987543222 2335677899999999997765555432 221111 011000
Q ss_pred CCcchhhhhhhhhhccccCCCchhhHHHHH-HhhccCCcCCCCHHHHHHHHhhcccccccccHHHHHHhHHHHHH-Hhhh
Q 003192 311 NFSGVQAAACSTIELSFNFLTGEDLKSTLL-LCSLMGYTYHASMLDLLKYGMGMGLFKDVNTMEEARDRACPLVH-KLKA 388 (840)
Q Consensus 311 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~a~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~~~~-~L~~ 388 (840)
....-......+...|..+++.+ +..+. ..+.++. ..+...++-... |- ........++ .|++
T Consensus 218 -t~~~v~~~l~~l~~~~~~l~~~~-~~~L~al~~~~~~-~~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 218 -NRDIALKALEMLMIDELGLDEID-RKLLSVLIEQFQG-GPVGLKTLAAAL---GE---------DADTIEDVYEPYLLQ 282 (305)
T ss_pred -CHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHhCC-CcccHHHHHHHh---CC---------CcchHHHhhhHHHHH
Confidence 00111222333566788888874 44443 4455543 344444433221 11 1122334566 5888
Q ss_pred ccccccc
Q 003192 389 CSLLLDS 395 (840)
Q Consensus 389 ~~l~~~~ 395 (840)
++|+...
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 8998644
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=2.4e-10 Score=107.48 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=15.3
Q ss_pred ceeEEEecCCcCCCCchhhh-cccCCcEEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHH-hccCCCCEEecCC
Q 003192 488 ELRVLDLTKMHLLSLPSSLH-LLVNLRTLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREI-GRLSKLRLLDLTN 564 (840)
Q Consensus 488 ~L~~L~l~~~~~~~lp~~i~-~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~l~~ 564 (840)
+++.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++.+..+++|++|++++|.|++++..+ ..+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 3444444444444332 222 34444444444444444444444455555555555554444333 2344555555544
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=4.6e-10 Score=105.63 Aligned_cols=120 Identities=22% Similarity=0.333 Sum_probs=43.4
Q ss_pred cccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhh-hcccCCcEEEec
Q 003192 441 FCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSL-HLLVNLRTLCLD 518 (840)
Q Consensus 441 ~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~L~~L~~L~L~ 518 (840)
+.+.|++.++.+..+.... .+.+|+.|++++|.+. .++. +..++.|++|++++|.++.+++.+ ..+++|+.|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 4567777777777665433 4667777777777764 3332 566777777777777777776554 357777777777
Q ss_pred CcccCC---cccccCCCCCCEEeccCCCCCCCcH----HHhccCCCCEEecC
Q 003192 519 QSVLGD---IAVIGELKQLEILSLSSSDIEHLPR----EIGRLSKLRLLDLT 563 (840)
Q Consensus 519 ~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~ 563 (840)
+|.|.+ +..+..+++|++|++.+|.++.-+. .+..+++|+.||-.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777655 3556667777777777776664432 25667777777643
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.3e-11 Score=130.09 Aligned_cols=168 Identities=25% Similarity=0.389 Sum_probs=100.1
Q ss_pred ccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCc
Q 003192 442 CTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 442 ~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~ 520 (840)
...++++.|++..+|... .|..|..+.++.|.+ ..+|.. ++++..|.+|||+.|.++.+|..++.|+ |+.|-+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 445566666666666655 556666666666655 344443 5666667777777777666666666655 666667766
Q ss_pred ccCC-cccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCcccccccccc-----ccccc--cCChhhhhc
Q 003192 521 VLGD-IAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERL-----NIERS--NASLDELKH 592 (840)
Q Consensus 521 ~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L-----~~~~~--~~~~~~l~~ 592 (840)
+++. |..++.+..|..||.+.|++..+|..++++.+|+.|++.. +.+..+|+.+..| +.+.+ ...+-.|.+
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecccCceeecchhhhh
Confidence 6666 4556666666677777776666666666676777666666 4455566544322 11100 111233556
Q ss_pred CCCCCeEEEEeecCccCCCcc
Q 003192 593 LSRLTTLEIHIQGAKILPRGL 613 (840)
Q Consensus 593 l~~L~~L~l~~~~~~~~~~~~ 613 (840)
|+.|++|-+.+|.+..-|..+
T Consensus 233 m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred hhhheeeeeccCCCCCChHHH
Confidence 666666666666666555554
No 35
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.98 E-value=4.4e-08 Score=106.97 Aligned_cols=293 Identities=16% Similarity=0.127 Sum_probs=161.6
Q ss_pred cccccchHHHHHHHHHHhC----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccC-CC---CcEEEEEeCCCccHHHHHH
Q 003192 83 YQAFDSRISTFKDITNALS----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHK-LF---DEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F---~~~~wv~vs~~~~~~~~~~ 154 (840)
++.+.||++++++|..++. ......+.|+|++|+|||++++.+++...... .. -..+|++.....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 3468999999999999886 23446899999999999999999998764321 11 1357777777777888999
Q ss_pred HHHHHhC---CCccc--cChhhHHHHHHHHHH-cCCcEEEEEccccccc-C----ccccCCcc-CCCC--CCcEEEEeeC
Q 003192 155 QIADELG---LFLCE--ESESGRARRLYARMK-EEKKILVILDDIWARL-D----LETLGIPL-GDEH--KGCKVLLTSR 220 (840)
Q Consensus 155 ~i~~~l~---~~~~~--~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~gs~iliTtR 220 (840)
.|++++. ...+. .+..+....+.+.+. .+++++||||+++... . +..+.... .... ....+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 9999883 32211 122233445555554 3567899999998662 1 11221110 1111 2234555554
Q ss_pred Ccchhhc---cc-C--ccceEEccCCCHHHHHHHHHHHHhcC--CCCCCcchHHHHHHHHHHcCCChHHH-HHHHHHHh-
Q 003192 221 SRGVLSR---EM-D--SEINFLVGILSQEESWSLFQKMVAEG--DCIRNHDLQSLAVAIAKECAGLPIAI-VTIAKALR- 290 (840)
Q Consensus 221 ~~~v~~~---~~-~--~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~~~G~Plai-~~~~~~l~- 290 (840)
....... .. . ....+.+++.+.++..+++..++..+ +..-+++.-+.+.+++....|.|..+ .++-....
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4432110 00 0 12468899999999999999886321 11222333345566777778888543 33222111
Q ss_pred ----c---cCHHHHHHHHHHhcCCCCCCCcchhhhhhhhhhccccCCCchhhHHHHHHhhcc--CCcCCCCHHHHHHHH-
Q 003192 291 ----E---ENLFEWKNALLELKRPSWRNFSGVQAAACSTIELSFNFLTGEDLKSTLLLCSLM--GYTYHASMLDLLKYG- 360 (840)
Q Consensus 291 ----~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~f--p~~~~~~~~~li~~w- 360 (840)
+ -+.+..+.+.+.+. .....-.+..||.+ .|..+...+.. ..+..+...++...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 13333344333321 11223345678876 34333322211 133456666666532
Q ss_pred -hhcccccccccHHHHHHhHHHHHHHhhhcccccc
Q 003192 361 -MGMGLFKDVNTMEEARDRACPLVHKLKACSLLLD 394 (840)
Q Consensus 361 -iaeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 394 (840)
+++.+-... -......++++.|...+++..
T Consensus 319 ~~~~~~~~~~----~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 319 EVCEDIGVDP----LTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHHhcCCCC----CcHHHHHHHHHHHHhcCCeEE
Confidence 122110000 112445567788888888753
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.98 E-value=1.2e-07 Score=101.21 Aligned_cols=277 Identities=15% Similarity=0.077 Sum_probs=147.0
Q ss_pred ccCCcccccchHHHHHHHHHHhC-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALS-----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQ 153 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 153 (840)
.|....+|+||++.++.+..++. ....+.+.|+|++|+||||+|+.+++..... + .++..+.. .....+
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~~-~~~~~l 93 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPAL-EKPGDL 93 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecccc-cChHHH
Confidence 45677789999999988877765 2335678899999999999999999987643 1 22222211 111122
Q ss_pred HHHHHHhCCCcc-ccCh-----hhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcchhhc
Q 003192 154 GQIADELGLFLC-EESE-----SGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLSR 227 (840)
Q Consensus 154 ~~i~~~l~~~~~-~~~~-----~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v~~~ 227 (840)
..++..+..... -.++ ......+...+. +.+..+|+|+..+...+.. .++ +.+-|..|+|...+...
T Consensus 94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHH
Confidence 233333321100 0000 011112222222 3445556655443322211 111 23556667776544321
Q ss_pred ccC-ccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhccCHHHHHHHHHHhcC
Q 003192 228 EMD-SEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREENLFEWKNALLELKR 306 (840)
Q Consensus 228 ~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~w~~~l~~l~~ 306 (840)
... ....+++++++.++..+++.+.+...+ ..-.++.+..|++.|+|.|-.+..+...+. .|..... .
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~---~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~---~ 235 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILG---VEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG---D 235 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC---C
Confidence 111 124689999999999999998754332 223456789999999999965555544322 1211110 0
Q ss_pred CCCCCCcchhhhhhhhhhccccCCCchhhHHHHH-HhhccCCcCCCCHHHHHHHHhhcccccccccHHHHHHhHHHHHH-
Q 003192 307 PSWRNFSGVQAAACSTIELSFNFLTGEDLKSTLL-LCSLMGYTYHASMLDLLKYGMGMGLFKDVNTMEEARDRACPLVH- 384 (840)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~a~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~~~~- 384 (840)
... ..+.-......+...+..|++.+ +..+. ....|+.+ .+..+.+-... -.+ .+..++.++
T Consensus 236 ~~I--~~~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~-~~~~~~~a~~l-----g~~-------~~~~~~~~e~ 299 (328)
T PRK00080 236 GVI--TKEIADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGG-PVGLDTLAAAL-----GEE-------RDTIEDVYEP 299 (328)
T ss_pred CCC--CHHHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCC-ceeHHHHHHHH-----CCC-------cchHHHHhhH
Confidence 000 01122334455677788888774 55443 55666643 45544443221 111 112223445
Q ss_pred Hhhhccccccc
Q 003192 385 KLKACSLLLDS 395 (840)
Q Consensus 385 ~L~~~~l~~~~ 395 (840)
.|++.+|++..
T Consensus 300 ~Li~~~li~~~ 310 (328)
T PRK00080 300 YLIQQGFIQRT 310 (328)
T ss_pred HHHHcCCcccC
Confidence 67788888654
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.98 E-value=6.7e-10 Score=119.15 Aligned_cols=157 Identities=24% Similarity=0.231 Sum_probs=96.9
Q ss_pred ccccEEeecccCCCC-----CCCcC-CCCCceEEEecCCCCCC--C---CChhhhcCCCceeEEEecCCcCC-CCchhhh
Q 003192 440 KFCTAISLHKCDVNE-----LPEEL-ECPQLKFFYMYPKDPAL--K---IPDKFFAGMIELRVLDLTKMHLL-SLPSSLH 507 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~--~---~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~ 507 (840)
..++.+.+.++.+.. ++..+ ..+++++|.+.++.... . .....+.++++|+.|++++|.+. ..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 346777777776622 33333 56678888887765541 0 01123667778888888888776 3455555
Q ss_pred cccC---CcEEEecCcccCC------cccccCC-CCCCEEeccCCCCC-----CCcHHHhccCCCCEEecCCCCCCcccc
Q 003192 508 LLVN---LRTLCLDQSVLGD------IAVIGEL-KQLEILSLSSSDIE-----HLPREIGRLSKLRLLDLTNCSKLKSIP 572 (840)
Q Consensus 508 ~L~~---L~~L~L~~~~l~~------~~~i~~L-~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~c~~l~~lp 572 (840)
.+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|.....-.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 5555 8888888887763 1345566 78888888888777 344456667788888888754221100
Q ss_pred ccccccccccccCChhhhhcCCCCCeEEEEeecCc
Q 003192 573 PNVERLNIERSNASLDELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 573 ~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 607 (840)
. .....+..+++|+.|++++|.+.
T Consensus 183 ~-----------~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 183 R-----------ALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred H-----------HHHHHHHhCCCCCEEeccCCccC
Confidence 0 01123445567888888777654
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=1.2e-10 Score=113.11 Aligned_cols=133 Identities=27% Similarity=0.301 Sum_probs=114.7
Q ss_pred cccccccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEE
Q 003192 437 DTLKFCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTL 515 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L 515 (840)
+.|+.+..+++++|.+..+.++. -.|++|.|+++.|.+.. +. + +..+++|..||||+|.++.+-..-.+|-|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ-N-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceee-eh-h-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 56788999999999999999888 56999999999998743 22 2 778999999999999999887777788999999
Q ss_pred EecCcccCCcccccCCCCCCEEeccCCCCCCCc--HHHhccCCCCEEecCCCCCCccccc
Q 003192 516 CLDQSVLGDIAVIGELKQLEILSLSSSDIEHLP--REIGRLSKLRLLDLTNCSKLKSIPP 573 (840)
Q Consensus 516 ~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~lp~ 573 (840)
.|++|.++.++.+++|.+|.+||+++|+|..+. .+|++|+.|++|.|.+| -+..+|+
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N-Pl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN-PLAGSVD 416 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC-Cccccch
Confidence 999999999999999999999999999998664 45899999999999984 4555553
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.90 E-value=3.2e-08 Score=101.54 Aligned_cols=177 Identities=15% Similarity=0.180 Sum_probs=111.4
Q ss_pred ccCCcccccchHHHH---HHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc-HHHHHH
Q 003192 79 LSKGYQAFDSRISTF---KDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD-IKKMQG 154 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~ 154 (840)
.|....+++|.+.-+ .-|..++..+.+.-..+||++|+||||||+.++...... | ..++...+ +.++ +
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdl-r 90 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDL-R 90 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHH-H
Confidence 466667777876544 335566667778888899999999999999999876544 3 33443332 3332 2
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEE--eeCCcchh--hcc
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLL--TSRSRGVL--SRE 228 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ili--TtR~~~v~--~~~ 228 (840)
++++ .-.+....+++.+|++|.|..- .+-+. .+|.-.+|..|+| ||-++.-. ...
T Consensus 91 ~i~e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 91 EIIE----------------EARKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHH----------------HHHHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHH
Confidence 2222 1122233378999999999754 22232 3455667887777 66665332 122
Q ss_pred cCccceEEccCCCHHHHHHHHHHHHhcCC-CC---CCcchHHHHHHHHHHcCCChHHH
Q 003192 229 MDSEINFLVGILSQEESWSLFQKMVAEGD-CI---RNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 229 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~---~~~~~~~~~~~i~~~~~G~Plai 282 (840)
.....++.+++|+.++-.+++.+-+.... .. ...-.++..+.+++.++|--.+.
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 34456899999999999999988432211 11 11123457778888888865443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=8.8e-11 Score=124.00 Aligned_cols=129 Identities=22% Similarity=0.367 Sum_probs=108.0
Q ss_pred EEeecccCCCCCCCcC---CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCc
Q 003192 444 AISLHKCDVNELPEEL---ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 444 ~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~ 520 (840)
++.|++..++.+|... .+..-...+++.|.+ ..+|.. ++.+..|..|.|..|.+..+|..+++|..|.+|+|+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~-~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF-SELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccccc-ccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 5667777777777543 566667778888877 467776 77888999999999999999999999999999999999
Q ss_pred ccCC-cccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCcccccccc
Q 003192 521 VLGD-IAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVE 576 (840)
Q Consensus 521 ~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~ 576 (840)
.++. |..++.|+ |+.|-+++|+++.+|..++.+..|.+||.+. +.+..+|..++
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~ 186 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLG 186 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhh
Confidence 9988 55676665 8999999999999999999999999999998 56778887554
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.83 E-value=4.4e-08 Score=107.82 Aligned_cols=184 Identities=15% Similarity=0.156 Sum_probs=111.3
Q ss_pred ccCCcccccchHHHHHH---HHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKD---ITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.|....+|+|++..+.. +..++..+....+.++|++|+||||+|+.+++..... | +.++....-.+-.++
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLRE 79 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHH
Confidence 45667779999888666 8888877777788999999999999999999876432 2 222222111111122
Q ss_pred HHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEE--eeCCcc--hhhccc
Q 003192 156 IADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLL--TSRSRG--VLSREM 229 (840)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ili--TtR~~~--v~~~~~ 229 (840)
+++.. ......+++.+|++|+++... +.+.+...+ ..|..++| ||.+.. +.....
T Consensus 80 ii~~~----------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l---e~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 80 VIEEA----------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHV---EDGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred HHHHH----------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHh---hcCcEEEEEeCCCChhhhccHHHh
Confidence 22111 111123577899999998652 233332222 23454554 344332 111112
Q ss_pred CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 003192 230 DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKA 288 (840)
Q Consensus 230 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 288 (840)
.....+.+.+++.++.++++.+.+.........-.++..+.|++.|+|.|..+..+...
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 23357899999999999999886432111001334567888999999999776554433
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=7.7e-08 Score=96.70 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=95.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
..+.+.|+|++|+|||+||+.+++....+ ...+.|+++... .... ..+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~---~~~~--------------------~~~~~~~~-- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKS---QYFS--------------------PAVLENLE-- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHh---hhhh--------------------HHHHhhcc--
Confidence 34678999999999999999999987654 335677765321 0000 01222222
Q ss_pred CcEEEEEcccccc---cCccc-cCCccCC-CCCCcEEEEeeCCc----------chhhcccCccceEEccCCCHHHHHHH
Q 003192 184 KKILVILDDIWAR---LDLET-LGIPLGD-EHKGCKVLLTSRSR----------GVLSREMDSEINFLVGILSQEESWSL 248 (840)
Q Consensus 184 k~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iliTtR~~----------~v~~~~~~~~~~~~l~~L~~~~~~~l 248 (840)
+.-+||+||+|.. .+|+. +...+.. ...|..++|+|.+. .+.. .+.....+++++++.++.+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHH
Confidence 2359999999864 33442 2221211 12355565554443 2221 233445889999999999999
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 003192 249 FQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAK 287 (840)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 287 (840)
+++.++..+ ..-.+++..-|++.+.|..-++..+-.
T Consensus 170 L~~~a~~~~---l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 170 LQRNAYQRG---IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 998875433 233467788999999887766655443
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=6.5e-10 Score=108.16 Aligned_cols=123 Identities=24% Similarity=0.303 Sum_probs=95.2
Q ss_pred CCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCC
Q 003192 485 GMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTN 564 (840)
Q Consensus 485 ~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 564 (840)
..+.|+.||||+|.|+.+-+++.-++.+|.|++++|.+..+.++..|++|+.|||++|.++++...-.+|.|.++|.|++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45678899999999999988888889999999999999888889999999999999998888776667888899999988
Q ss_pred CCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCcc---ccccCcEEEEE
Q 003192 565 CSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGL---FSKKLERYKIL 624 (840)
Q Consensus 565 c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~ 624 (840)
+.+..+. .++++-+|..|+++.|++..+...- .++.|+.+.+.
T Consensus 362 -N~iE~LS----------------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 362 -NKIETLS----------------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred -hhHhhhh----------------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 4454432 3666777788888887776554322 44445554443
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=1.3e-10 Score=118.54 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=51.8
Q ss_pred CCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhcccccccc
Q 003192 713 AFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERI 792 (840)
Q Consensus 713 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 792 (840)
..++|+.|.+..|.++......... .+.+.|+.+++..|....+..-.....+++.|++|.+++|..+++-..... .
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l--~ 394 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL--S 394 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh--h
Confidence 3445555555555544443221111 234555555555554433321112233455555555555544433200000 0
Q ss_pred ccchhhcccccccccccccccc-cccCcccccccceeecCCCCC
Q 003192 793 SSNQEIELITPRGIQKCSLTAE-AATNEITFSKLKSLSLSYLPS 835 (840)
Q Consensus 793 ~~~~~l~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~L~~cp~ 835 (840)
.+-.....|..+.+++|+.+.. .-..+..+++|+.+++.+|..
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 0112234455555555554432 223334556666666666544
No 45
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=1.1e-06 Score=98.99 Aligned_cols=184 Identities=14% Similarity=0.185 Sum_probs=117.2
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCcE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKL-------------------FDEV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 138 (840)
+|..+.+++|++..++.|.+++..+.+ ..+.++|..|+||||+|+.+.+.+..... |..+
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 466778899999999999999887654 46679999999999999999887753211 1112
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCC
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKG 212 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g 212 (840)
++++.+....+++ +..+++... .++.-++|||+++... .++.+...+..-...
T Consensus 91 iEIDAas~rgVDd---------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASNRGVDE---------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEecccccccHHH---------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 3333222222222 222222221 2455688999998653 355554444444456
Q ss_pred cEEEEeeCCcchh-hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHH
Q 003192 213 CKVLLTSRSRGVL-SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP-IAIVTIA 286 (840)
Q Consensus 213 s~iliTtR~~~v~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~ 286 (840)
.++|+||.+..-. .........+.+++++.++..+.+.+.+...+. .-..+..+.|++.++|.. -|+..+-
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7788877775432 222233357999999999999999887433221 223567788999999865 4555433
No 46
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.68 E-value=4.7e-07 Score=97.77 Aligned_cols=202 Identities=14% Similarity=0.163 Sum_probs=114.5
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-cEEEEEeCCCccH--HHHHH-
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFD-EVVFVDVPQIPDI--KKMQG- 154 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~--~~~~~- 154 (840)
.|.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++..... .+. ..+.++++...+. ..+..
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcC
Confidence 456667789999999999999887776678899999999999999999877533 222 2345554331100 00000
Q ss_pred -HHHHHhCCC-ccccChhhHHHHHHHHHHc-----CCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCcc-h
Q 003192 155 -QIADELGLF-LCEESESGRARRLYARMKE-----EKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSRG-V 224 (840)
Q Consensus 155 -~i~~~l~~~-~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~~-v 224 (840)
.....++.. ............+.+.... +.+-+||+||+.... ....+...+......+++|+|+.... +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 0000111222222222211 234589999996542 12223323323334567777765432 2
Q ss_pred hhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 225 LSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 225 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
..........+.+.+++.++..+++...+...+. .-..+..+.+++.++|.+-.+..
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV---DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1111122347888999999998888876433222 12356788899999987765543
No 47
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.68 E-value=3e-07 Score=92.44 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=112.4
Q ss_pred ccCCcccccchHHHHH---HHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFK---DITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.|....+++|.+..+. -|...+.++.++-+.+||++|+||||||+.+.+..+... ..||..|....-..-.+.
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRD 208 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHH
Confidence 3444555666655443 255555678889999999999999999999998776542 567777665433333344
Q ss_pred HHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEE--eeCCcchh--hccc
Q 003192 156 IADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLL--TSRSRGVL--SREM 229 (840)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ili--TtR~~~v~--~~~~ 229 (840)
|+++-.. +....++|.+|++|.|..- .+-+ ..+|.-.+|..++| ||.++... ....
T Consensus 209 ife~aq~---------------~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 209 IFEQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHH
Confidence 4443211 1122367899999999643 2222 24566778887776 67665332 1123
Q ss_pred CccceEEccCCCHHHHHHHHHHHHhc-CC--C----CCCc---chHHHHHHHHHHcCCChH
Q 003192 230 DSEINFLVGILSQEESWSLFQKMVAE-GD--C----IRNH---DLQSLAVAIAKECAGLPI 280 (840)
Q Consensus 230 ~~~~~~~l~~L~~~~~~~lf~~~~~~-~~--~----~~~~---~~~~~~~~i~~~~~G~Pl 280 (840)
..-.++.+++|..++-..++.+.+.. ++ . ...+ -...+.+-++..|+|-..
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 34458899999999999988875431 11 1 1111 123456667777888553
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.65 E-value=1.9e-06 Score=96.81 Aligned_cols=186 Identities=12% Similarity=0.104 Sum_probs=113.1
Q ss_pred ccCCcccccchHHHHHHHHHHhCC----CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSN----PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 154 (840)
.|....+++|+++.++++.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ ++-++.+...+...+ .
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~i-~ 82 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADVI-E 82 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHHH-H
Confidence 566677899999999999998862 2267899999999999999999999874 32 344455543333322 2
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC------ccccCCccCCCCCCcEEEEeeCCcc-hhh-
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD------LETLGIPLGDEHKGCKVLLTSRSRG-VLS- 226 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~iliTtR~~~-v~~- 226 (840)
.++....... .+...++-+||+|+++.... +..+...+. ..+..||+|+-+.. ...
T Consensus 83 ~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 83 RVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 2322221110 01112568999999976421 333322222 12334666554432 111
Q ss_pred cccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 227 REMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 227 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
..-.....+.+.+++.++....+...+...+.. -..+....|++.++|...++......+
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~---i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE---CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111233578899999999988888775433322 235678899999999776555433333
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.1e-08 Score=105.25 Aligned_cols=92 Identities=22% Similarity=0.218 Sum_probs=59.1
Q ss_pred CchhhhcccCCcEEEecCcccCCcc---cccCCCCCCEEeccCCCCC---CCcHHHhccCCCCEEecCCCCCCccccccc
Q 003192 502 LPSSLHLLVNLRTLCLDQSVLGDIA---VIGELKQLEILSLSSSDIE---HLPREIGRLSKLRLLDLTNCSKLKSIPPNV 575 (840)
Q Consensus 502 lp~~i~~L~~L~~L~L~~~~l~~~~---~i~~L~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l 575 (840)
+-.-=+++++||...|+++.+..+. ....|++++.|||+.|-+. .+-.-...|++|+.|+++.|. +...-.+.
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~ 191 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSN 191 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCcccc
Confidence 3334467888999999988877753 4667888888888888555 333445678888888888843 32221111
Q ss_pred cccccccccCChhhhhcCCCCCeEEEEeecCc
Q 003192 576 ERLNIERSNASLDELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 576 ~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 607 (840)
. -..++.|+.|.++.|+++
T Consensus 192 ~-------------~~~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 192 T-------------TLLLSHLKQLVLNSCGLS 210 (505)
T ss_pred c-------------hhhhhhhheEEeccCCCC
Confidence 0 014556677777766654
No 50
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.1e-06 Score=94.96 Aligned_cols=195 Identities=14% Similarity=0.179 Sum_probs=112.4
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|....+++|.+..++.+...+..+.+ ..+.++|+.|+||||+|+.+++.......... ..+......+++.
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~ 83 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIE 83 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHh
Confidence 456677899999999999998876554 46789999999999999999987753211100 0000001111111
Q ss_pred HHhCCCcc-----ccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc-chh
Q 003192 158 DELGLFLC-----EESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVL 225 (840)
Q Consensus 158 ~~l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~ 225 (840)
.....+.. .....+....+.+.+. .+++-++|+|+++... .++.+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 11000000 0001112222222221 1345699999997653 3444444444334456677766543 232
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIV 283 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 283 (840)
....+....+++.+++.++..+.+...+...+. .-.++.++.|++.++|.|..+.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 221223357999999999999888876533221 2234567889999999886443
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=7e-09 Score=106.65 Aligned_cols=158 Identities=22% Similarity=0.176 Sum_probs=110.0
Q ss_pred ccccccEEeecccCCCCCCC--cC-CCCCceEEEecCCCCCCCC-ChhhhcCCCceeEEEecCCcCCCCch--hhhcccC
Q 003192 438 TLKFCTAISLHKCDVNELPE--EL-ECPQLKFFYMYPKDPALKI-PDKFFAGMIELRVLDLTKMHLLSLPS--SLHLLVN 511 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~L~~ 511 (840)
..++++.+++.++.....+. .. .|++++.|+|+.|-+..-. -..+...+++|+.|+++.|.+...-+ .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 35788999999988876663 23 8999999999888654322 23456789999999999988764322 2236788
Q ss_pred CcEEEecCcccCC--c-ccccCCCCCCEEeccCC-CCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCCh
Q 003192 512 LRTLCLDQSVLGD--I-AVIGELKQLEILSLSSS-DIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASL 587 (840)
Q Consensus 512 L~~L~L~~~~l~~--~-~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~ 587 (840)
|+.|.|+.|.++. + .....+++|+.|+|.+| .+..-......+..|+.|||++|+. -.++..
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~------------- 264 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQG------------- 264 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccc-------------
Confidence 9999999998875 2 33566888999999988 3332222345577889999998543 344421
Q ss_pred hhhhcCCCCCeEEEEeecCccC
Q 003192 588 DELKHLSRLTTLEIHIQGAKIL 609 (840)
Q Consensus 588 ~~l~~l~~L~~L~l~~~~~~~~ 609 (840)
...+.++.|+.|+++.+++..+
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred cccccccchhhhhccccCcchh
Confidence 1246778888888888877644
No 52
>PLN03025 replication factor C subunit; Provisional
Probab=98.60 E-value=9.6e-07 Score=93.85 Aligned_cols=187 Identities=12% Similarity=0.066 Sum_probs=112.1
Q ss_pred cccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-cEEEEEeCCCccHHHHHHHH
Q 003192 78 TLSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFD-EVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 78 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 156 (840)
..|....+++|.++.++.+..++..+..+-+.++|++|+||||+|+.+++..... .|. .++-++.+....... .+++
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~-vr~~ 84 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDV-VRNK 84 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHH-HHHH
Confidence 3566777889999999988888877767778899999999999999999987432 232 233334443333322 2222
Q ss_pred HHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc-chhhcccCccc
Q 003192 157 ADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVLSREMDSEI 233 (840)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~~~~~~~~~ 233 (840)
++.+..... ....++.-++++|+++... ..+.+...+......+++++++... .+.........
T Consensus 85 i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 222111000 0001346789999997652 2222322222223456677666443 22111112234
Q ss_pred eEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 234 NFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 234 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
.+++++++.++..+.+...+...+.. -.++....|++.++|....+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~---i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVP---YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 78999999999998888775433222 22456788999999866433
No 53
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=8e-07 Score=102.09 Aligned_cols=187 Identities=15% Similarity=0.213 Sum_probs=115.0
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCC-------------------CcE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKLF-------------------DEV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-------------------~~~ 138 (840)
+|..+..++|.+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++........ .-+
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 4567778999999999999998876655 56899999999999999999887543111 111
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc--cCccccCCccCCCCCCcEEE
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVL 216 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il 216 (840)
++++......+..+ ++|.+.+ ...-..+++-++|+|+++.. ...+.+...+-......++|
T Consensus 91 iEidAas~~kVDdI-ReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EEeccccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22222111112211 2222211 11111356789999999765 23444433333333455666
Q ss_pred EeeCC-cchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 217 LTSRS-RGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 217 iTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
++|.+ ..+..........|++.+++.++..+.+.+.+...+ ..-..+..+.|++.++|.|..+..+
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55544 334322222336899999999999999987643321 2234567888999999988644443
No 54
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.59 E-value=1.8e-06 Score=92.48 Aligned_cols=188 Identities=11% Similarity=0.095 Sum_probs=111.4
Q ss_pred cccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCc-EEEEEeCCCccHHHHHHHH
Q 003192 78 TLSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDE-VVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 78 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 156 (840)
..|.....++|+++.++.+..++..+..+.+.++|.+|+||||+|+.+++...... +.. .+-++.+.......+. +.
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~~-~~ 88 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVIR-NK 88 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHHH-HH
Confidence 34566677899999999999998877677789999999999999999999875432 221 1222222222222111 11
Q ss_pred HHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc-chhhcccCccc
Q 003192 157 ADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVLSREMDSEI 233 (840)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~~~~~~~~~ 233 (840)
+..+....+ .....+-++++|+++... ....+...+......+++|+++... .+.........
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111111000 001235689999986542 2223333333333456677766432 22111112334
Q ss_pred eEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 234 NFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 234 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
.+++.+++.++....+...+...+. .-.++....+++.++|.+..+..
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 6899999999998888877543322 12356788899999998765433
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.2e-06 Score=92.77 Aligned_cols=178 Identities=16% Similarity=0.176 Sum_probs=115.2
Q ss_pred cccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhh----ccCCCCcEEEEEe-CCCccHHHHHHHH
Q 003192 83 YQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVK----GHKLFDEVVFVDV-PQIPDIKKMQGQI 156 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~~~~~i 156 (840)
..+++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+++..- ...|+|...|... +....++++ +++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~ 81 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNI 81 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHH
Confidence 34577999999999999886654 5778999999999999999998753 2345665555442 333344442 333
Q ss_pred HHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccc--ccCccccCCccCCCCCCcEEEEeeCCcchh-hcccCccc
Q 003192 157 ADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWA--RLDLETLGIPLGDEHKGCKVLLTSRSRGVL-SREMDSEI 233 (840)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iliTtR~~~v~-~~~~~~~~ 233 (840)
.+.+..... .+++-++|+|+++. ...++.+...+..-..++.+|++|.+.+.. ........
T Consensus 82 ~~~~~~~p~----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 82 IEEVNKKPY----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHHHhcCcc----------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 333322110 13455667776643 345666666666656788888888765433 22223345
Q ss_pred eEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 234 NFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 234 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
.+.+.+++.++....+.+.+ . ....+.++.++..++|.|..+..
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~-~------~~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKY-N------DIKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHh-c------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 88999999999988776552 1 11234477889999999875543
No 56
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1.3e-07 Score=109.32 Aligned_cols=86 Identities=26% Similarity=0.471 Sum_probs=47.9
Q ss_pred eeEEEecCCcCC-CCchhhhcccCCcEEEecCcccCC--cccccCCCCCCEEeccCCCCC-CCcHHHhccCCCCEEecCC
Q 003192 489 LRVLDLTKMHLL-SLPSSLHLLVNLRTLCLDQSVLGD--IAVIGELKQLEILSLSSSDIE-HLPREIGRLSKLRLLDLTN 564 (840)
Q Consensus 489 L~~L~l~~~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~ 564 (840)
++.|+|++|.+. .+|..++.+++|++|+|++|.+.. |+.++.+++|++|+|++|+++ .+|..++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455555555554 445555555555555555555543 334555555666666655555 4555555566666666655
Q ss_pred CCCCcccccc
Q 003192 565 CSKLKSIPPN 574 (840)
Q Consensus 565 c~~l~~lp~~ 574 (840)
|...+.+|..
T Consensus 500 N~l~g~iP~~ 509 (623)
T PLN03150 500 NSLSGRVPAA 509 (623)
T ss_pred CcccccCChH
Confidence 5444455543
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.58 E-value=6.4e-07 Score=90.59 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=104.7
Q ss_pred chHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCcccc
Q 003192 88 SRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEE 167 (840)
Q Consensus 88 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 167 (840)
+....++.+..++.......|.|+|++|+|||++|+.+++..... ....++++++.-.+ ..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH-----------
Confidence 355667777777655556789999999999999999999887543 33456665443211 00
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEEccccccc---Ccc-ccCCccCC-CCCCcEEEEeeCCcchh--------hcccCccce
Q 003192 168 SESGRARRLYARMKEEKKILVILDDIWARL---DLE-TLGIPLGD-EHKGCKVLLTSRSRGVL--------SREMDSEIN 234 (840)
Q Consensus 168 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iliTtR~~~v~--------~~~~~~~~~ 234 (840)
..+.+.+. +.-+||+||++... .|. .+...+.. ...+.++|+||+..... .........
T Consensus 82 ------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 82 ------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred ------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 01112222 23489999997643 222 22222211 12344788888754211 111122357
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 235 FLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 235 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
+++.+++.++...++...+.... .+-.++..+.+++.+.|+|..+..+...+
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~---~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRG---LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 89999999999999887643222 12335667888888999998777665443
No 58
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.7e-06 Score=95.50 Aligned_cols=191 Identities=19% Similarity=0.190 Sum_probs=112.8
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCcE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKL-------------------FDEV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 138 (840)
+|....+++|++.....+...+..+.. ..+.++|++|+||||+|+.+++....... +..+
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 466777899999998888888877666 46889999999999999999987643211 0112
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc--cCccccCCccCCCCCCcEEE
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVL 216 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il 216 (840)
+.++.+....+.++ ++|.+..... . ..+++-++|+|+++.. ...+.+...+........+|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~~---------------p-~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGYR---------------P-MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhhC---------------h-hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 23333222222222 1222211100 0 1145679999999754 22333433333322334444
Q ss_pred EeeCC-cchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHHHHH
Q 003192 217 LTSRS-RGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAG-LPIAIVTIAKAL 289 (840)
Q Consensus 217 iTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~~l 289 (840)
++|.+ ..+..........+++.+++.++....+.+.+...+. .-.++....|++.++| .+.|+..+-.+.
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44433 3332222334457899999999998888877543222 2235667888888865 566766665543
No 59
>PF13173 AAA_14: AAA domain
Probab=98.57 E-value=1.3e-07 Score=85.66 Aligned_cols=120 Identities=23% Similarity=0.270 Sum_probs=80.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEK 184 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 184 (840)
.+++.|.|+.|+||||++++++++.. ....+++++............+ ....+.+... .+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIK-PG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhc-cC
Confidence 36899999999999999999998776 2345777776554331110000 1122222222 35
Q ss_pred cEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcchhhc-----ccCccceEEccCCCHHH
Q 003192 185 KILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLSR-----EMDSEINFLVGILSQEE 244 (840)
Q Consensus 185 ~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v~~~-----~~~~~~~~~l~~L~~~~ 244 (840)
+.++++|+|....+|......+.+..+..+|++|+........ ..+....+++.||+-.|
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 7899999999888888766666665567899999988755421 12334478999998766
No 60
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.56 E-value=4.8e-06 Score=95.59 Aligned_cols=206 Identities=15% Similarity=0.110 Sum_probs=118.2
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC---cEEEEEeCC---CccHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFD---EVVFVDVPQ---IPDIKKM 152 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~---~~~~~~~ 152 (840)
.|.....++|+...+..+.+.+.......|.|+|++|+||||+|+.+++......++. ..-|+.+.. ..+...+
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 3566677899999999988888766667899999999999999999988765433331 234554432 1122222
Q ss_pred HHHH---------------HHHhCCCc----------------c--ccChhhHHHHHHHHHHcCCcEEEEEcccccc--c
Q 003192 153 QGQI---------------ADELGLFL----------------C--EESESGRARRLYARMKEEKKILVILDDIWAR--L 197 (840)
Q Consensus 153 ~~~i---------------~~~l~~~~----------------~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~ 197 (840)
...+ ++..+... + +.-+...+..+.+.+. .+++.++-|+.|.. .
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPN 307 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcc
Confidence 1111 11111100 0 0112223455555555 46677776666544 3
Q ss_pred CccccCCccCCCCCCcEEEE--eeCCcchhhcc-cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHH
Q 003192 198 DLETLGIPLGDEHKGCKVLL--TSRSRGVLSRE-MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKE 274 (840)
Q Consensus 198 ~~~~l~~~l~~~~~gs~ili--TtR~~~v~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~ 274 (840)
.|+.+...+....+...|++ ||++....... ......+.+.+++.++.++++.+.+...+. .-.+++.+.|.+.
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v---~ls~eal~~L~~y 384 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV---HLAAGVEELIARY 384 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHC
Confidence 46666655555555555555 56654322111 122236788999999999999987532211 1123455556555
Q ss_pred cCCChHHHHHHHHH
Q 003192 275 CAGLPIAIVTIAKA 288 (840)
Q Consensus 275 ~~G~Plai~~~~~~ 288 (840)
+..-+.|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 54446666655544
No 61
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.56 E-value=1.6e-06 Score=103.06 Aligned_cols=261 Identities=18% Similarity=0.213 Sum_probs=150.3
Q ss_pred ccchHHHHHHHHHHhC---CCCccEEEEEcCCCCcHHHHHHHHHHHhhccC-CCCcEEEEEeCCCc---cHHHHHHHHHH
Q 003192 86 FDSRISTFKDITNALS---NPSVDMIGICGMGGIGKTMLVKEIARQVKGHK-LFDEVVFVDVPQIP---DIKKMQGQIAD 158 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~---~~~~~~~~i~~ 158 (840)
++||+.+++.|...+. .+...++.+.|.+|||||++++.|......++ .|-.-.+-....+. ......++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999999887 45567999999999999999999998776541 11111111111111 12223333333
Q ss_pred Hh-------------------CCCccc-----------------------cChhhH-----HHHHHHHHHcCCcEEEEEc
Q 003192 159 EL-------------------GLFLCE-----------------------ESESGR-----ARRLYARMKEEKKILVILD 191 (840)
Q Consensus 159 ~l-------------------~~~~~~-----------------------~~~~~~-----~~~l~~~l~~~k~~LlVlD 191 (840)
++ +..... .....+ ...+.....+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 32 111000 000011 1112222335679999999
Q ss_pred cccccc--Cc---cccCCccC---CCCCCcEEEEeeCCc-chhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCc
Q 003192 192 DIWARL--DL---ETLGIPLG---DEHKGCKVLLTSRSR-GVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNH 262 (840)
Q Consensus 192 dv~~~~--~~---~~l~~~l~---~~~~gs~iliTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~ 262 (840)
|+.-.+ .+ +.++.... ...+..-.+.|.+.. ............+.+.||+..+.-.+........ ..
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~----~~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT----KL 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc----cc
Confidence 993221 11 11111111 001111122333332 1112223445689999999999999998774221 23
Q ss_pred chHHHHHHHHHHcCCChHHHHHHHHHHhcc-------CHHHHHHHHHHhcCCCCCCCcchhhhhhhhhhccccCCCchhh
Q 003192 263 DLQSLAVAIAKECAGLPIAIVTIAKALREE-------NLFEWKNALLELKRPSWRNFSGVQAAACSTIELSFNFLTGEDL 335 (840)
Q Consensus 263 ~~~~~~~~i~~~~~G~Plai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~ 335 (840)
...+..+.|+++..|+|+-+..+-..+... +...|+.-..++.. .+..+.+...+..-.+.||.. .
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl~kL~~~-t 310 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARLQKLPGT-T 310 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHHhcCCHH-H
Confidence 345678899999999999999999888732 33445443333221 122333666678889999998 7
Q ss_pred HHHHHHhhccCCcCCCCHHHHHHH
Q 003192 336 KSTLLLCSLMGYTYHASMLDLLKY 359 (840)
Q Consensus 336 k~cfl~~a~fp~~~~~~~~~li~~ 359 (840)
+...-..|++.. .++...|-..
T Consensus 311 ~~Vl~~AA~iG~--~F~l~~La~l 332 (849)
T COG3899 311 REVLKAAACIGN--RFDLDTLAAL 332 (849)
T ss_pred HHHHHHHHHhCc--cCCHHHHHHH
Confidence 999999999884 4444444433
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=5.1e-08 Score=107.73 Aligned_cols=166 Identities=26% Similarity=0.350 Sum_probs=88.6
Q ss_pred cccEEeecccCCCCCCCcCCCC--CceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEec
Q 003192 441 FCTAISLHKCDVNELPEELECP--QLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLD 518 (840)
Q Consensus 441 ~~~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 518 (840)
.+..+++.++.+..++...... +|+.|++++|.+. .+|.. +..++.|+.|++++|.+..+|...+.+++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 3455555555555555544222 5555555555442 22211 445555555555555555555544455555555555
Q ss_pred CcccCCccc-ccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCC
Q 003192 519 QSVLGDIAV-IGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT 597 (840)
Q Consensus 519 ~~~l~~~~~-i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~ 597 (840)
+|.+..++. ++.+.+|++|.+++|.+...+..+.++.++..|.+.+ +.+..+| ..++.+++|+
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~---------------~~~~~l~~l~ 258 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLP---------------ESIGNLSNLE 258 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeecc---------------chhccccccc
Confidence 555555333 2344445555555554444444455555555555443 2333222 3456777788
Q ss_pred eEEEEeecCccCCCccccccCcEEEEE
Q 003192 598 TLEIHIQGAKILPRGLFSKKLERYKIL 624 (840)
Q Consensus 598 ~L~l~~~~~~~~~~~~~~~~L~~L~l~ 624 (840)
.|++++|.+..++......+++.|++.
T Consensus 259 ~L~~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 259 TLDLSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred eeccccccccccccccccCccCEEecc
Confidence 888888888888774455666666664
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.55 E-value=6.3e-08 Score=107.05 Aligned_cols=88 Identities=32% Similarity=0.553 Sum_probs=48.0
Q ss_pred CCCceeEEEecCCcCCCCchhhhccc-CCcEEEecCcccCCc-ccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEec
Q 003192 485 GMIELRVLDLTKMHLLSLPSSLHLLV-NLRTLCLDQSVLGDI-AVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDL 562 (840)
Q Consensus 485 ~l~~L~~L~l~~~~~~~lp~~i~~L~-~L~~L~L~~~~l~~~-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 562 (840)
.++.+..|++.++.+..+|.....+. +|+.|++++|.+..+ ..++.+++|+.|++++|.++.+|...+.+++|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34455555555555555555555553 555555555555553 3455555555555555555555554445555555555
Q ss_pred CCCCCCccccc
Q 003192 563 TNCSKLKSIPP 573 (840)
Q Consensus 563 ~~c~~l~~lp~ 573 (840)
++ +.+..+|.
T Consensus 194 s~-N~i~~l~~ 203 (394)
T COG4886 194 SG-NKISDLPP 203 (394)
T ss_pred cC-CccccCch
Confidence 55 34555544
No 64
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=2.3e-06 Score=94.92 Aligned_cols=180 Identities=16% Similarity=0.213 Sum_probs=112.4
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCC---------------------
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFD--------------------- 136 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--------------------- 136 (840)
.|....+++|.+..+..+...+..+.. ..+.++|+.|+||||+|+.+++.........
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 456677789999999988887776554 5788999999999999999998775321110
Q ss_pred --cEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCC
Q 003192 137 --EVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGD 208 (840)
Q Consensus 137 --~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~ 208 (840)
.++.++......+. .+..+.+... .+++-++|+|+++.. ..++.+...+..
T Consensus 96 h~Dv~eidaas~~~vd---------------------~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe 154 (507)
T PRK06645 96 HPDIIEIDAASKTSVD---------------------DIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE 154 (507)
T ss_pred CCcEEEeeccCCCCHH---------------------HHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh
Confidence 11122222222222 2222222221 245678999999864 345555444444
Q ss_pred CCCCcEEEE-eeCCcchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 209 EHKGCKVLL-TSRSRGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 209 ~~~gs~ili-TtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
....+++|+ ||+...+..........+++.+++.++..+.+.+.+...+. .-..+....|++.++|.+.-+
T Consensus 155 pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 155 PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 444556554 44444443222233357899999999999999888643321 123456778999999977443
No 65
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.9e-06 Score=94.57 Aligned_cols=193 Identities=12% Similarity=0.056 Sum_probs=113.5
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|....+++|.+..++.+..++..+.. ..+.++|++|+||||+|+.+++.......+....|.|.+. +.+.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~ 80 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVR 80 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHh
Confidence 456677899999999999998886655 4669999999999999999998875432222222222110 0000
Q ss_pred HHhCCC-----ccccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCC-cchh
Q 003192 158 DELGLF-----LCEESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRS-RGVL 225 (840)
Q Consensus 158 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~-~~v~ 225 (840)
.....+ .......+.+..+.+.+. .+++-++|+|+++.. ..++.+...+......+.+|++|.. ..+.
T Consensus 81 ~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 81 RGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 000000 000001111222222221 145679999999754 2344454444443445555555543 3332
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
.........+++.+++.++..+.+.+.+...+. .-.++....|++.++|.+--+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 222233457999999999999999887543322 123567889999999988544
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.8e-06 Score=96.24 Aligned_cols=182 Identities=13% Similarity=0.190 Sum_probs=114.5
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCC-------------------CcE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLF-------------------DEV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-------------------~~~ 138 (840)
+|....+++|++...+.|..++..+.. ..+.++|+.|+||||+|+.+++........ .-+
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 466777899999999999999986654 578999999999999999999876532111 112
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHH----HcCCcEEEEEccccccc--CccccCCccCCCCCC
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARM----KEEKKILVILDDIWARL--DLETLGIPLGDEHKG 212 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g 212 (840)
+.++.+....++ .++.+.+.. ..+++-++|+|+|+... ....+...+.....+
T Consensus 90 iEIDAAs~~~Vd---------------------dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDAASRTKVE---------------------DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEecccccCCHH---------------------HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 222222111222 222222221 12566789999998652 334444334333455
Q ss_pred cEEEEeeCCcc-hhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 213 CKVLLTSRSRG-VLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 213 s~iliTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
.++|++|.+.. +..........+++++++.++..+.+.+.+...+ ..-..+....|++.++|.+..+..
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg---I~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ---IAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 67777776542 2211123345799999999999998887754332 123355678899999997754443
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.52 E-value=7.9e-07 Score=83.11 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc
Q 003192 87 DSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE 166 (840)
Q Consensus 87 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 166 (840)
.||+..+..+...+.....+.+.|+|++|+||||+|+.+++..... -..++++..+...........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 3678888999998877667889999999999999999999987532 2346677665543322221111100
Q ss_pred cChhhHHHHHHHHHHcCCcEEEEEcccccc-----cCccccCCccCC---CCCCcEEEEeeCCcc
Q 003192 167 ESESGRARRLYARMKEEKKILVILDDIWAR-----LDLETLGIPLGD---EHKGCKVLLTSRSRG 223 (840)
Q Consensus 167 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~---~~~gs~iliTtR~~~ 223 (840)
............++.++|+||++.. ..+..+...... ...+..||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111111246789999999853 122222222211 135778888888653
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1.9e-06 Score=95.89 Aligned_cols=182 Identities=12% Similarity=0.189 Sum_probs=113.6
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC------------------------
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHK------------------------ 133 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------------ 133 (840)
.|....+++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+.+....
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 456677899999999999999987665 4678999999999999999998775321
Q ss_pred CCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccC
Q 003192 134 LFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLG 207 (840)
Q Consensus 134 ~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~ 207 (840)
.|..+++++.+....+ +.+..+.+.+. .++.-++|+|+++... ..+.+...+.
T Consensus 91 ~hpDviEIdAas~~gV---------------------DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 91 RFVDYIEMDAASNRGV---------------------DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCCcceEecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 0111222222221122 22223333221 3566799999998652 3444444443
Q ss_pred CCCCCcEEEEeeC-CcchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 208 DEHKGCKVLLTSR-SRGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 208 ~~~~gs~iliTtR-~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
.-..+.++|++|. ...+.......-..+.+..++.++..+.+.+.+...+ .....+..+.|++.++|.|.....
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg---i~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG---IAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3334555555544 4444332233345789999999999998887643222 122345668899999999865443
No 69
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=3.9e-07 Score=83.25 Aligned_cols=115 Identities=25% Similarity=0.362 Sum_probs=78.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC---CCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-cChhhHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK---LFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-ESESGRARRLYARM 180 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l 180 (840)
.+.+.|+|.+|+|||++++.+.+...... .-..++|++++...+...+...|+++++..... .+.......+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46899999999999999999998764310 023467999988889999999999999887665 34455567777777
Q ss_pred HcCCcEEEEEcccccc-c--CccccCCccCCCCCCcEEEEeeCC
Q 003192 181 KEEKKILVILDDIWAR-L--DLETLGIPLGDEHKGCKVLLTSRS 221 (840)
Q Consensus 181 ~~~k~~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~iliTtR~ 221 (840)
.+.+..+||+|+++.. . .++.+.. +.+ ..+.++|++.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 7666679999999765 2 1222321 222 566778777665
No 70
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.49 E-value=3.6e-06 Score=95.27 Aligned_cols=204 Identities=18% Similarity=0.147 Sum_probs=118.1
Q ss_pred cccccchHHHHHHHHHHhC-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhcc---CCCC--cEEEEEeCCCccHHHH
Q 003192 83 YQAFDSRISTFKDITNALS-----NPSVDMIGICGMGGIGKTMLVKEIARQVKGH---KLFD--EVVFVDVPQIPDIKKM 152 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~~ 152 (840)
++.+.||++++++|...|. .....++.|+|++|+|||+.++.|.+.+... .... .+++|+.....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4457899999999988875 2233577899999999999999998876421 1122 3577777777788888
Q ss_pred HHHHHHHhCCCcccc--ChhhHHHHHHHHHHc--CCcEEEEEcccccccC-----ccccCCccCCCCCCcEEEE--eeCC
Q 003192 153 QGQIADELGLFLCEE--SESGRARRLYARMKE--EKKILVILDDIWARLD-----LETLGIPLGDEHKGCKVLL--TSRS 221 (840)
Q Consensus 153 ~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~ili--TtR~ 221 (840)
...|.+++....+.. ........++..+.. +...+||||+|+.... +-.+... + ...+++|+| +|.+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecCc
Confidence 899998884433221 122344455554422 2345899999975421 1111111 1 123455544 3332
Q ss_pred cchh----h---cccCccceEEccCCCHHHHHHHHHHHHhcCCC-CCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 222 RGVL----S---REMDSEINFLVGILSQEESWSLFQKMVAEGDC-IRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 222 ~~v~----~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
.... . ..+. ...+...|++.++-.+++..++..... ..+..++-+|+.++...|-.=.||.++-.+.
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2111 1 0111 123667999999999999998653221 2222233333433333333556666554444
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.3e-06 Score=94.17 Aligned_cols=188 Identities=14% Similarity=0.200 Sum_probs=113.4
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCcE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHK-------------------LFDEV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 138 (840)
+|....+++|.+..++.+..++..+.+ ..+.++|+.|+||||+|+.+++...... .|...
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 466777899999999999999886554 4578999999999999999998664311 12223
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc--cCccccCCccCCCCCCcEEE
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVL 216 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il 216 (840)
++++......++++ +++++.+ ...-..+++-++|+|+++.. ...+.+...+......+++|
T Consensus 91 ieidaas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 91 IEIDAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EEeecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 33333222222221 1222211 11111256679999999754 23444444444434455566
Q ss_pred EeeCC-cchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChH-HHHHHH
Q 003192 217 LTSRS-RGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPI-AIVTIA 286 (840)
Q Consensus 217 iTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 286 (840)
++|.+ ..+..........+++.+++.++..+.+.+.+...+ ..-.++....|++.++|.+. |+..+-
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg---i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN---INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 54443 333322223346899999999998888877643322 22345567889999999664 444443
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.6e-06 Score=92.35 Aligned_cols=193 Identities=14% Similarity=0.092 Sum_probs=112.7
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
+|....+++|.+..+..|..++..+.+. .+.++|+.|+||||+|+.+++............ +....-.+.+.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p-------Cg~C~sC~~i~ 85 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP-------CNECTSCLEIT 85 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc-------cCCCcHHHHHH
Confidence 5667788999999999999998877654 689999999999999999998765431111000 00000011121
Q ss_pred HHhCCCcc-----ccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEE-eeCCcchh
Q 003192 158 DELGLFLC-----EESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLL-TSRSRGVL 225 (840)
Q Consensus 158 ~~l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ili-TtR~~~v~ 225 (840)
.....+.. .....+.+..+.+.+. .++.-++|+|+++.. ..++++...+........+|+ ||....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 11111100 0011122223333222 356679999999765 335555444433223444444 44444443
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIA 281 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 281 (840)
......-..|.+.+++.++..+.+.+.+...+ ..-.++....|++.++|.+.-
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg---i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN---VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCChHHH
Confidence 22233335799999999999888887753322 122356788999999998854
No 73
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.48 E-value=3.6e-07 Score=91.91 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=63.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC--ccHHHHHHHHHHHhCCCccccChhh------HHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI--PDIKKMQGQIADELGLFLCEESESG------RARR 175 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 175 (840)
....++|+|++|+|||||++.+++..... +|+.++|+.+... .++.++++.+...+-....+.+... .+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999988766 8999999997776 7899999998332211111111111 1112
Q ss_pred HHHH-HHcCCcEEEEEcccccc
Q 003192 176 LYAR-MKEEKKILVILDDIWAR 196 (840)
Q Consensus 176 l~~~-l~~~k~~LlVlDdv~~~ 196 (840)
..++ ...++++++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222 23588999999999653
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.45 E-value=8.4e-09 Score=105.53 Aligned_cols=144 Identities=15% Similarity=0.214 Sum_probs=94.7
Q ss_pred cCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHh
Q 003192 685 FLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIA 764 (840)
Q Consensus 685 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~ 764 (840)
.+-+..+++..|..+.. ...+.....+..|+.|..++|..+......... ...++|+.|.++.|..+++.--....
T Consensus 267 ~~~i~~lnl~~c~~lTD---~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg-~~~~~L~~l~l~~c~~fsd~~ft~l~ 342 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTD---EDLWLIACGCHALQVLCYSSCTDITDEVLWALG-QHCHNLQVLELSGCQQFSDRGFTMLG 342 (483)
T ss_pred ChHhhccchhhhccccc---hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh-cCCCceEEEeccccchhhhhhhhhhh
Confidence 34455555555543322 111222334667777777777766543222222 24589999999999988876444456
Q ss_pred hhcccCcEEEEcccccchhhccccccccccchhhccccccccccccccccc-----ccCcccccccceeecCCCCCcc
Q 003192 765 RGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEA-----ATNEITFSKLKSLSLSYLPSLT 837 (840)
Q Consensus 765 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-----~~~l~~l~~L~~L~L~~cp~L~ 837 (840)
.+.+.|+.|++..|....+-.-.... .+.+.|+.+.++.|...... ...-.....|..+.+.+||.++
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~sls-----~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLASLS-----RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred cCChhhhhhcccccceehhhhHhhhc-----cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 78899999999999766554111111 35788999999999876644 3444467789999999999875
No 75
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=5.5e-07 Score=104.28 Aligned_cols=109 Identities=20% Similarity=0.327 Sum_probs=92.8
Q ss_pred CceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCC-CCchhhhcccCCcEEEecCcccCC--cccccCCCCCCEEec
Q 003192 463 QLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLL-SLPSSLHLLVNLRTLCLDQSVLGD--IAVIGELKQLEILSL 539 (840)
Q Consensus 463 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L 539 (840)
.++.|+|.+|.+.+.+|.. ++++++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.. |..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788999999998888876 889999999999999997 788899999999999999999876 567999999999999
Q ss_pred cCCCCC-CCcHHHhcc-CCCCEEecCCCCCCcccc
Q 003192 540 SSSDIE-HLPREIGRL-SKLRLLDLTNCSKLKSIP 572 (840)
Q Consensus 540 ~~~~l~-~lp~~i~~L-~~L~~L~l~~c~~l~~lp 572 (840)
++|.++ .+|..++.+ .++..+++.+|..+...|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999888 889888764 567788888876555443
No 76
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.42 E-value=7.3e-07 Score=93.17 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc--cHHHHHHHHHHHhCCCccccChhh------HHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP--DIKKMQGQIADELGLFLCEESESG------RARRL 176 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~l 176 (840)
...++|+|++|+||||||+.+|+....+ +|+.++||.+.+.. ++.+++++|...+-......+... .+...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999998876 89999999998887 778888888632211111111111 11122
Q ss_pred HHHH-HcCCcEEEEEcccccc
Q 003192 177 YARM-KEEKKILVILDDIWAR 196 (840)
Q Consensus 177 ~~~l-~~~k~~LlVlDdv~~~ 196 (840)
.+++ ..+++++|++|++...
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHH
Confidence 2222 3578999999999643
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=4e-06 Score=94.52 Aligned_cols=182 Identities=13% Similarity=0.199 Sum_probs=111.1
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCC-------------------CcE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLF-------------------DEV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-------------------~~~ 138 (840)
+|....+++|++..+..|..++..+.. ..+.++|+.|+||||+|+.+++........ -.+
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 466777899999999999999887664 478999999999999999998875432111 111
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHH----HcCCcEEEEEcccccccC--ccccCCccCCCCCC
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARM----KEEKKILVILDDIWARLD--LETLGIPLGDEHKG 212 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g 212 (840)
+.++.+....++ .+..+++.. ..+++-++|+|+++.... ...+...+......
T Consensus 91 lEidaAs~~gVd---------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASNTGID---------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEeccccCCHH---------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 222222222221 122222211 114567999999975432 23333333333345
Q ss_pred cEEEEeeCCc-chhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 213 CKVLLTSRSR-GVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 213 s~iliTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
+++|++|.+. .+.....+....+.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+.-+..
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHHH
Confidence 6677666544 332221223346788899999999988877543322 22355778999999998854433
No 78
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.2e-06 Score=91.56 Aligned_cols=203 Identities=13% Similarity=0.134 Sum_probs=116.6
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEE-EeCCCccHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFV-DVPQIPDIKKMQGQI 156 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv-~vs~~~~~~~~~~~i 156 (840)
.|....+++|.+..++.+..++.++.++ .+.++|+.|+||||+|+.+++........+...|. .+...+......+.+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 4566778899999999999998876664 58899999999999999999887543222111111 011111122222222
Q ss_pred HHHhCCCc---c--ccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEee-CCcch
Q 003192 157 ADELGLFL---C--EESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTS-RSRGV 224 (840)
Q Consensus 157 ~~~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt-R~~~v 224 (840)
...-..+. . .....+.+..+.+.+. .+++-++|+|+++... .++.+...+....+.+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 21111110 0 0011222333333332 2456688999987543 4555544444444566666555 33333
Q ss_pred hhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 225 LSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 225 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
..........+++.+++.++..+.+...+...+ ..-..+.+..|++.++|.+--+..
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEG---ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 221122234788999999999888877643221 123356788999999997754433
No 79
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.5e-07 Score=71.30 Aligned_cols=56 Identities=36% Similarity=0.489 Sum_probs=26.6
Q ss_pred ceeEEEecCCcCCCCch-hhhcccCCcEEEecCcccCCc--ccccCCCCCCEEeccCCC
Q 003192 488 ELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEILSLSSSD 543 (840)
Q Consensus 488 ~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~ 543 (840)
+|++|++++|.+..+|. .|..+++|++|++++|.++.+ ..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554443 444445555555554444442 234445555555554443
No 80
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=8.2e-06 Score=89.72 Aligned_cols=184 Identities=13% Similarity=0.149 Sum_probs=114.1
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCcE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHK-------------------LFDEV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 138 (840)
.|....+++|.+..++.+.+++..+.+. .+-++|+.|+||||+|+.+++...... .+.-+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 4567778999999999998888876665 789999999999999999987543210 11223
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEE
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVL 216 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~il 216 (840)
+.++.+....++++ +++++...... ..+++-++|+|+++... ..+.+...+..-.+.+++|
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~P----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYLP----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhcc----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 44444433333332 22222221100 01456689999997542 2344444444334556666
Q ss_pred EeeCC-cchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 217 LTSRS-RGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 217 iTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
++|.+ ..+..........+++.+++.++..+.+.+.+...+. .-.++..+.|++.++|.+..+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 65543 3333222333457899999999998888887543322 223556788999999977543
No 81
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.39 E-value=1.2e-05 Score=87.58 Aligned_cols=187 Identities=14% Similarity=0.172 Sum_probs=112.4
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCc
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHK--------------------LFDE 137 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~F~~ 137 (840)
.|.....++|+++.++.+.+++..+.. ..+-++|++|+||||+|+.++....... +++
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 456667789999999999999876654 4678999999999999999988764221 222
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc--cCccccCCccCCCCCCcEE
Q 003192 138 VVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKV 215 (840)
Q Consensus 138 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 215 (840)
+++++.+....+.. .+++.+.+.... . .+++-++|+|+++.. .....+...+......+.+
T Consensus 88 ~~~~~~~~~~~~~~-~~~l~~~~~~~p---------------~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 88 VIEIDAASNNGVDD-IREILDNVKYAP---------------S-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEEeeccccCCHHH-HHHHHHHHhcCc---------------c-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 23332221112111 122222221100 0 134568899998654 2233443344333345666
Q ss_pred EEeeCCcc-hhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 003192 216 LLTSRSRG-VLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIA 286 (840)
Q Consensus 216 liTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 286 (840)
|++|.+.. +..........+++.+++.++..+.+...+...+. .-.++.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI---KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 66665443 22211223357888999999998888876533221 2235678889999999886655443
No 82
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.39 E-value=1.7e-05 Score=76.55 Aligned_cols=181 Identities=17% Similarity=0.159 Sum_probs=94.1
Q ss_pred cccCCcccccchHHHHHHHHHHhC-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHH
Q 003192 78 TLSKGYQAFDSRISTFKDITNALS-----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKM 152 (840)
Q Consensus 78 ~~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 152 (840)
..|....+|+|.++.++.+.-++. .+...-+-+||++|+||||||..+++..... | .+.+.+......++
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl 92 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL 92 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH
Confidence 356788899999988877554443 2346778999999999999999999998765 3 22322211111111
Q ss_pred HHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--C-------ccccCC-ccCCCC-----------C
Q 003192 153 QGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--D-------LETLGI-PLGDEH-----------K 211 (840)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~-------~~~l~~-~l~~~~-----------~ 211 (840)
..+...+ +++-+|++|+++... + .+.... ..-..+ +
T Consensus 93 ---------------------~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 93 ---------------------AAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---------------------HHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1122222 234566677775331 0 111000 000011 1
Q ss_pred CcEEEEeeCCcchhhcccCcc-ceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 212 GCKVLLTSRSRGVLSREMDSE-INFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
-+-|=.|||..-+.....+.. ...+++..+.+|-.++..+.+..- ..+-.++.+.+|++++.|-|.-..-+-+.+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l---~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL---NIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT---T-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh---CCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 233446888865542212222 245899999999999988763221 234456789999999999997655444433
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.39 E-value=4.6e-06 Score=96.61 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=102.0
Q ss_pred ccCCcccccchHHHHH---HHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFK---DITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.|....+|+|++..+. .+..++..+...-+.++|++|+||||+|+.+++..... |. .++.+. ..+.++ ++
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~--f~---~lna~~-~~i~di-r~ 95 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH--FS---SLNAVL-AGVKDL-RA 95 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc--ce---eehhhh-hhhHHH-HH
Confidence 4566778899988774 46666667777788999999999999999999876432 31 121110 011111 11
Q ss_pred HHHHhCCCccccChhhHHHHHHHHHH-cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEe--eCCcc--hhhcc
Q 003192 156 IADELGLFLCEESESGRARRLYARMK-EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLT--SRSRG--VLSRE 228 (840)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliT--tR~~~--v~~~~ 228 (840)
++ ....+.+. .+++.+||+|||+.. .+.+.+... ...|..++|+ |.+.. +....
T Consensus 96 ~i----------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~---lE~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 96 EV----------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW---VENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred HH----------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH---hcCceEEEEEecCCChHhhhhhHh
Confidence 11 11111111 145689999999754 233333322 2345555553 33321 11111
Q ss_pred cCccceEEccCCCHHHHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHcCCChH
Q 003192 229 MDSEINFLVGILSQEESWSLFQKMVAEG----DCIRNHDLQSLAVAIAKECAGLPI 280 (840)
Q Consensus 229 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~----~~~~~~~~~~~~~~i~~~~~G~Pl 280 (840)
......+.+++++.++...++.+.+... ......-.++..+.|++.+.|.-.
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 2223579999999999999998765310 011122335677888899988654
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=7.7e-06 Score=91.30 Aligned_cols=198 Identities=14% Similarity=0.103 Sum_probs=111.2
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
+|....+++|++..++.+.+++..+.+ ..+.++|+.|+||||+|+.+++...... |... ..+......+.+.
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESIN 83 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHH
Confidence 567777899999999999999876544 4788999999999999999998875322 1110 0111112222221
Q ss_pred HHhCCCcc---c--cChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEee-CCcchh
Q 003192 158 DELGLFLC---E--ESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTS-RSRGVL 225 (840)
Q Consensus 158 ~~l~~~~~---~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTt-R~~~v~ 225 (840)
.....+.. . ....+.++.+.+... .+++-++|+|+++.. ..+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 11110000 0 001111222222211 123457999999754 23444443333333345555544 333332
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChH-HHHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPI-AIVTIA 286 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 286 (840)
.........+++.+++.++....+...+...+. .-..+.+..+++.++|.+. |+..+-
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI---KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 222233457899999999999888876533221 1224567889999999664 444433
No 85
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=7.5e-06 Score=88.29 Aligned_cols=173 Identities=14% Similarity=0.074 Sum_probs=105.1
Q ss_pred cccccchHHHHHHHHHHhCCCC----------ccEEEEEcCCCCcHHHHHHHHHHHhhccC-------------------
Q 003192 83 YQAFDSRISTFKDITNALSNPS----------VDMIGICGMGGIGKTMLVKEIARQVKGHK------------------- 133 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------- 133 (840)
+..++|.+..++.+..++..+. ...+.++|++|+|||++|+.+++......
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 4568899999999999987643 45788999999999999999988654321
Q ss_pred CCCcEEEEEeC-CCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCcc
Q 003192 134 LFDEVVFVDVP-QIPDIKKMQGQIADELGLFLCEESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPL 206 (840)
Q Consensus 134 ~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l 206 (840)
|.| +.++... ....++ .+..+.+... .+++-++|+|+++... ....+...+
T Consensus 84 hpD-~~~i~~~~~~i~i~---------------------~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 84 HPD-VRVVAPEGLSIGVD---------------------EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCC-EEEeccccccCCHH---------------------HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 111 1122111 111111 1222333222 2455688889997652 223333333
Q ss_pred CCCCCCcEEEEeeCCc-chhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 207 GDEHKGCKVLLTSRSR-GVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 207 ~~~~~gs~iliTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
.....+..+|++|.+. .+..........+.+.+++.++..+.+.... + ...+.+..+++.++|.|.....+
T Consensus 142 Eep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~--~------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 142 EEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD--G------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc--C------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3334456666666554 3332222334589999999999988887541 1 12455788999999999755443
No 86
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.3e-05 Score=85.69 Aligned_cols=200 Identities=17% Similarity=0.034 Sum_probs=113.8
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEE---EEeCCCccHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVF---VDVPQIPDIKKMQG 154 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w---v~vs~~~~~~~~~~ 154 (840)
.|.....++|.++..+.+.+.+..+.+. .+-++|+.|+||+|+|..+++..-.+........ ...-.........+
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 3555667899999999999998876654 7899999999999999999987753321110000 00000000011112
Q ss_pred HHHHHhCCCc-------c-------ccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcE
Q 003192 155 QIADELGLFL-------C-------EESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCK 214 (840)
Q Consensus 155 ~i~~~l~~~~-------~-------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 214 (840)
.|...-..+. . ..-..+.+..+.+.+. .+.+.++|+||++... ....+...+..-..++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 2211110000 0 0001123333444332 3566799999997542 23334333333334566
Q ss_pred EEEeeCCcc-hhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 215 VLLTSRSRG-VLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 215 iliTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
+|++|.+.. +..........+.+.+++.++..+++.... .. ...+....+++.++|.|+....+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~--~~-----~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG--PD-----LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc--cc-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 677666653 332223344589999999999999998762 11 11222367899999999866544
No 87
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.5e-05 Score=82.28 Aligned_cols=200 Identities=23% Similarity=0.317 Sum_probs=125.6
Q ss_pred cccchHHHHHHHHHHhC----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHh
Q 003192 85 AFDSRISTFKDITNALS----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADEL 160 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 160 (840)
.+.+|+.+++++...|. .....-+.|+|.+|+|||+.++.+.+.......=..+++|+.-...+...+...|++++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 37899999999988875 23333499999999999999999999887552222278999999999999999999999
Q ss_pred CCC-ccccChhhHHHHHHHHHHc-CCcEEEEEcccccccCcc--ccCCccCC-CCCCcEEEEe--eCCcchhh-------
Q 003192 161 GLF-LCEESESGRARRLYARMKE-EKKILVILDDIWARLDLE--TLGIPLGD-EHKGCKVLLT--SRSRGVLS------- 226 (840)
Q Consensus 161 ~~~-~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~--~l~~~l~~-~~~gs~iliT--tR~~~v~~------- 226 (840)
+.. ..+....+....+.+.+.. ++.+++|||+++....-. -+-..+.. ....++|++. +-+.....
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh
Confidence 632 2233444556666666654 678999999997653221 11001111 1124544443 33322211
Q ss_pred cccCccceEEccCCCHHHHHHHHHHHHhcC--CCCCCcchHHHHHHHHHHcCC-ChHHHHHH
Q 003192 227 REMDSEINFLVGILSQEESWSLFQKMVAEG--DCIRNHDLQSLAVAIAKECAG-LPIAIVTI 285 (840)
Q Consensus 227 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~~~G-~Plai~~~ 285 (840)
...+. ..+...|-+.+|-..++..++-.+ +...++..-+++..++..-+| .=.||..+
T Consensus 178 s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 178 SSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 11222 237789999999999999886432 333334444455555555554 44455443
No 88
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.38 E-value=8e-07 Score=92.21 Aligned_cols=237 Identities=23% Similarity=0.260 Sum_probs=158.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCC-CcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLF-DEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKE 182 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 182 (840)
..+.+.++|.|||||||++-++.. .... | +.+.++...+..|...+.-.+...++...... ......+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHh-
Confidence 358999999999999999999988 4444 6 56777888888888888877777777654321 122334445555
Q ss_pred CCcEEEEEcccccccC-ccccCCccCCCCCCcEEEEeeCCcchhhcccCccceEEccCCCHH-HHHHHHHHHHhcC--CC
Q 003192 183 EKKILVILDDIWARLD-LETLGIPLGDEHKGCKVLLTSRSRGVLSREMDSEINFLVGILSQE-ESWSLFQKMVAEG--DC 258 (840)
Q Consensus 183 ~k~~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~--~~ 258 (840)
++|.++|+||..+..+ -..+...+..+...-.|+.|+|.... +..+..+.+.+|+.. ++.++|...+... ..
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 6789999999866522 11222223334445578889997543 455667888888865 7889987765322 22
Q ss_pred CCCcchHHHHHHHHHHcCCChHHHHHHHHHHhccCHHHHHHH----HHHhcCCCCCCCcchhhhhhhhhhccccCCCchh
Q 003192 259 IRNHDLQSLAVAIAKECAGLPIAIVTIAKALREENLFEWKNA----LLELKRPSWRNFSGVQAAACSTIELSFNFLTGED 334 (840)
Q Consensus 259 ~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~w~~~----l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 334 (840)
.-.......+.+|.++.+|.|++|...++..+.-...+--.. ...+... .....--+......+.+||--|...
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw- 240 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW- 240 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-
Confidence 233445668899999999999999999999886544433222 2222222 1222223456788899999999888
Q ss_pred hHHHHHHhhccCCcCCCC
Q 003192 335 LKSTLLLCSLMGYTYHAS 352 (840)
Q Consensus 335 ~k~cfl~~a~fp~~~~~~ 352 (840)
.+.-|--++.|...+...
T Consensus 241 e~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHHhcchhhhhhhhccc
Confidence 477777777777544433
No 89
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5.8e-06 Score=92.45 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=112.3
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCC-------------------CcE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKLF-------------------DEV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-------------------~~~ 138 (840)
.|....+++|.+..++.+.+++..+.+. .+-++|+.|+||||+|+.+++.......+ .-+
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 5667788999999999999999876554 67899999999999999999877533211 113
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc--cCccccCCccCCCCCCcEEE
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVL 216 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il 216 (840)
+.++.+....++++ +++++.+... -..++.-++|+|+|+.. ...+.+...+..-...+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 33333322333332 2222222110 01255678999999864 23344433343333456666
Q ss_pred EeeCCc-chhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 003192 217 LTSRSR-GVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIV 283 (840)
Q Consensus 217 iTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 283 (840)
++|.+. .+..........+++.+++.++..+.+.+.+...+. .-..+....|++.++|.+..+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHH
Confidence 655443 332221223346889999999887777666433221 1234557788999999775443
No 90
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=8.5e-06 Score=92.41 Aligned_cols=197 Identities=12% Similarity=0.132 Sum_probs=113.6
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|....+++|.+..++.|...+..+.+ ..+.++|+.|+||||+|+.+++.......+. +..+......+.|.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 456777899999999999999887655 3578999999999999999988765431110 01111112222221
Q ss_pred HHhCCCc---cc--cChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCC-cchh
Q 003192 158 DELGLFL---CE--ESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRS-RGVL 225 (840)
Q Consensus 158 ~~l~~~~---~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~-~~v~ 225 (840)
..-..+. +. ....+.+..+.+.+. .+++-++|+|+++... ..+.+...+..-....++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 1000000 00 011112222322221 3567799999997652 334443333333334555555444 4443
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
.........|.+.+++.++..+.+.+.+...+ ....++....|++.++|.+..+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~---i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQ---IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22223346899999999999998887643222 1223456788999999988644443
No 91
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=2.5e-07 Score=71.33 Aligned_cols=60 Identities=32% Similarity=0.459 Sum_probs=52.3
Q ss_pred CCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCccc
Q 003192 462 PQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVL 522 (840)
Q Consensus 462 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l 522 (840)
|+|++|++++|.+ ..+|...|.++++|++|++++|.+..+|+ .|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788889988876 47787789999999999999999998865 889999999999999974
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.37 E-value=8.2e-06 Score=79.64 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=94.3
Q ss_pred HHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhcc--------------------CCCCcEEEEEeC-CCccHHHH
Q 003192 95 DITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGH--------------------KLFDEVVFVDVP-QIPDIKKM 152 (840)
Q Consensus 95 ~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs-~~~~~~~~ 152 (840)
.+.+.+..+.+ ..+.++|+.|+||||+|+.+.+..... .+.|. .++... .....+.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45555555555 578999999999999999998887543 12222 222111 11222221
Q ss_pred HHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc-chhhccc
Q 003192 153 QGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVLSREM 229 (840)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~~~~~ 229 (840)
+++.+.+.... . .+.+-++|+||++... ..+.+...+......+.+|++|++. .+.....
T Consensus 82 -~~i~~~~~~~~---------------~-~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 82 -RELVEFLSRTP---------------Q-ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred -HHHHHHHccCc---------------c-cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 22222221110 0 1456789999987542 2344444444434456677766654 2222222
Q ss_pred CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHH
Q 003192 230 DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIA 281 (840)
Q Consensus 230 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 281 (840)
.....+.+.+++.++..+.+.+. + -.++.+..|++.++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~---g------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ---G------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc---C------CCHHHHHHHHHHcCCCccc
Confidence 33458999999999998888776 1 1246788999999998863
No 93
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1e-05 Score=91.50 Aligned_cols=199 Identities=11% Similarity=0.138 Sum_probs=113.4
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCC--CcEEEEEeCCCccHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLF--DEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~ 155 (840)
.|....+++|.+..+..|.+++..+.+ ..+-++|+.|+||||+|+.+++........ ...- ...+......+.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~ 86 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRD 86 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHH
Confidence 456777899999999999999887665 577899999999999999998876432110 0000 011111222222
Q ss_pred HHHHhCCCc---c--ccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCC-cc
Q 003192 156 IADELGLFL---C--EESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRS-RG 223 (840)
Q Consensus 156 i~~~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~-~~ 223 (840)
|...-..+. + .....+.+..+.+... .++.-++|+|+|+.. ...+.+...+..-....++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 211000000 0 0011112223333221 244568999999865 2344444444333345566655544 34
Q ss_pred hhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 224 VLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 224 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
+..........+++++++.++..+.+.+.+...+. .-..+....|++.++|.+..+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 43222333468999999999998888877533222 22345678899999997754433
No 94
>PTZ00202 tuzin; Provisional
Probab=98.35 E-value=4.4e-06 Score=87.68 Aligned_cols=164 Identities=17% Similarity=0.213 Sum_probs=101.0
Q ss_pred ccCCcccccchHHHHHHHHHHhCC---CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSN---PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.|.+...|+||+.+...+...|.+ +..+++.|+|++|+|||||++.+..... + ...+++.. +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 567788899999999999998863 2245899999999999999999986554 1 13333333 67999999
Q ss_pred HHHHhCCCccccChhhHHHHHHHHHH----c-CCcEEEEEcccccccCcccc---CCccCCCCCCcEEEEeeCCcchh--
Q 003192 156 IADELGLFLCEESESGRARRLYARMK----E-EKKILVILDDIWARLDLETL---GIPLGDEHKGCKVLLTSRSRGVL-- 225 (840)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlVlDdv~~~~~~~~l---~~~l~~~~~gs~iliTtR~~~v~-- 225 (840)
++.+||.... ....+....+.+.+. . +++.+||+-== +...+..+ ...+....+-|-|++----+.+.
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 9999997422 222233344444333 3 67777776311 11111100 00122223345566533332221
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
....+.-..|.+++++.++|.++-++.
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhc
Confidence 112334457899999999999887765
No 95
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.2e-05 Score=85.54 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=115.4
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCC--CCcEEEEEeCCCccHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKL--FDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.|.....++|.++..+.+...+..+.. ..+.|+|+.|+||||+|..+++..-.... +... ............+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 355666789999999999999887654 46899999999999999999988754211 1100 00111111223333
Q ss_pred HHHHhCCC-------ccc-------cChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcE-
Q 003192 156 IADELGLF-------LCE-------ESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCK- 214 (840)
Q Consensus 156 i~~~l~~~-------~~~-------~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~- 214 (840)
+...-..+ .+. .-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 32221100 000 011233444444443 3567799999997652 22333333322223344
Q ss_pred EEEeeCCcchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 215 VLLTSRSRGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 215 iliTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
|++|++...+..........+.+.+++.++..+++.+.. .. .. -.++.+..+++.++|.|.....+
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~--~~--~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG--SS--QG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh--cc--cC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 444444444433222334589999999999999998741 11 11 22456788999999999865544
No 96
>PRK08727 hypothetical protein; Validated
Probab=98.33 E-value=1.1e-05 Score=81.30 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=95.8
Q ss_pred HHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhh
Q 003192 92 TFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESG 171 (840)
Q Consensus 92 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 171 (840)
.+..+...........+.|+|.+|+|||+|++.+++....+ ...++|+++.+ ....+
T Consensus 28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~--------------- 84 (233)
T PRK08727 28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL--------------- 84 (233)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH---------------
Confidence 33433333333334579999999999999999999886654 23566775422 11111
Q ss_pred HHHHHHHHHHcCCcEEEEEccccccc---Cccc-cCCccCC-CCCCcEEEEeeCCcchhh--------cccCccceEEcc
Q 003192 172 RARRLYARMKEEKKILVILDDIWARL---DLET-LGIPLGD-EHKGCKVLLTSRSRGVLS--------REMDSEINFLVG 238 (840)
Q Consensus 172 ~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~iliTtR~~~v~~--------~~~~~~~~~~l~ 238 (840)
....+.+. +.-+||+||+.... .|.. +...+.. ..+|..||+|++...-.- ..+.....++++
T Consensus 85 --~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~ 160 (233)
T PRK08727 85 --RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLP 160 (233)
T ss_pred --HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEec
Confidence 11223333 34699999997442 2221 2111111 124566999988642210 112224578999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 239 ILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 239 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
+++.++-.+++++++...+ ..-.++....|++.++|-.-++
T Consensus 161 ~~~~e~~~~iL~~~a~~~~---l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 161 VLDDVARAAVLRERAQRRG---LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhCCCCHHHH
Confidence 9999999999998754322 2334567888888888765544
No 97
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=2.7e-05 Score=84.88 Aligned_cols=184 Identities=13% Similarity=0.169 Sum_probs=108.3
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhcc------CCCCcE-EEEEeCCCccHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGH------KLFDEV-VFVDVPQIPDIK 150 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~F~~~-~wv~vs~~~~~~ 150 (840)
.|....+++|++...+.+.+.+..+.. +.+.++|++|+||||+|+.+.+..... ..|... +.++.....++.
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 456677889999999999999987655 488899999999999999998876432 112211 112111111122
Q ss_pred HHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEee-CCcchhhc
Q 003192 151 KMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTS-RSRGVLSR 227 (840)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt-R~~~v~~~ 227 (840)
++ +++++.+... .. .+++-++++|++.... .++.+...+......+.+|++| ....+...
T Consensus 92 ~i-~~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 DI-RNLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HH-HHHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 22 2222222110 00 1345689999986542 2444433333323345555554 33333222
Q ss_pred ccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 228 EMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 228 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
.......++..+++.++....+...+...+. .-.++.+..+++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~---~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGI---KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 2233347899999999998888876543222 123567888899999866533
No 98
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.30 E-value=1.9e-06 Score=84.11 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHhC---CCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 85 AFDSRISTFKDITNALS---NPSVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
.|+||+++++++...+. ....+.+.|+|++|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999993 4456899999999999999999999988766
No 99
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.6e-05 Score=89.26 Aligned_cols=201 Identities=12% Similarity=0.121 Sum_probs=114.3
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPS-VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|....+++|.+..++.|..++..+. ...+.++|+.|+||||+|+.+++........+. ..++.....+.|.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 45667778999998888888887665 467889999999999999999987753211100 0111111112221
Q ss_pred HHhCCCcc-----ccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCC-cchh
Q 003192 158 DELGLFLC-----EESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRS-RGVL 225 (840)
Q Consensus 158 ~~l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~-~~v~ 225 (840)
.....+.. .....+.+..+.+.+. .+++-++|+|+++.. ...+.+...+........+|++|.+ ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 11100000 0000111222222211 245679999999765 2334444333332334556665554 3333
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP-IAIVTIAKAL 289 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~~l 289 (840)
.........+++.+++.++..+.+...+...+. .-..+.++.|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 221223347899999999999888876433221 223567888999999965 6777665544
No 100
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.2e-05 Score=89.28 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=113.8
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEE-eCCCccHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVD-VPQIPDIKKMQGQI 156 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 156 (840)
+|....+++|.+..+..+..++..+.+ ..+.++|+.|+||||+|+.+++.......++.-.|.. +...+......+.+
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 466777899999999999998877655 4688999999999999999998875432221111111 11112222222222
Q ss_pred HHHhCCCc---c--ccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEee-CCcch
Q 003192 157 ADELGLFL---C--EESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTS-RSRGV 224 (840)
Q Consensus 157 ~~~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt-R~~~v 224 (840)
...-..+. + .....+.+..+.+.+. .+++-++|+|+++... ..+.+...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 21111110 0 0011223333333331 2455688999987653 2344444443333445555544 33333
Q ss_pred hhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChH
Q 003192 225 LSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPI 280 (840)
Q Consensus 225 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 280 (840)
..........+++.+++.++....+.+.+...+. .-..+.++.|++.++|..-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHH
Confidence 3222334568999999999988888776433221 1235678889999999654
No 101
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.25 E-value=1.6e-07 Score=94.25 Aligned_cols=244 Identities=16% Similarity=0.074 Sum_probs=114.0
Q ss_pred cCCCceeEEEecCCcCC-----CCchhhhcccCCcEEEecCcccCC-----c-------ccccCCCCCCEEeccCCCCC-
Q 003192 484 AGMIELRVLDLTKMHLL-----SLPSSLHLLVNLRTLCLDQSVLGD-----I-------AVIGELKQLEILSLSSSDIE- 545 (840)
Q Consensus 484 ~~l~~L~~L~l~~~~~~-----~lp~~i~~L~~L~~L~L~~~~l~~-----~-------~~i~~L~~L~~L~L~~~~l~- 545 (840)
..+..+..|+|++|.+. .+.+.+.+.++|+.-+++.-.... | +.+-+.++|++||||.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 34555555555555553 233344555555555555432111 1 22445567777777777554
Q ss_pred C----CcHHHhccCCCCEEecCCCCCCccccc-ccc----ccccccccCChhhhhcCCCCCeEEEEeecCccCCCcc---
Q 003192 546 H----LPREIGRLSKLRLLDLTNCSKLKSIPP-NVE----RLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGL--- 613 (840)
Q Consensus 546 ~----lp~~i~~L~~L~~L~l~~c~~l~~lp~-~l~----~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--- 613 (840)
. +-.-+.+.+.|++|+|.+|. ++..-. .++ .|. .....+.-++|+.+....|.+...+...
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELA------VNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHH------HHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 2 22335667778888887763 221110 000 000 0112344567888888877776655432
Q ss_pred ---ccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchh----hcccccccccC
Q 003192 614 ---FSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKN----VLNELDAEGFL 686 (840)
Q Consensus 614 ---~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~l~ 686 (840)
..+.|+.+.+..+.... .+. ..-...+..+++|+.|+|..|..... +...+ ..++
T Consensus 180 ~~~~~~~leevr~~qN~I~~---------------eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL--~s~~ 241 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRP---------------EGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL--SSWP 241 (382)
T ss_pred HHHhccccceEEEecccccC---------------chh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh--cccc
Confidence 22344444433221000 000 11112234467777777776643321 11222 4567
Q ss_pred CCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccc-cccccCcccCCCCCEEEEecC
Q 003192 687 QLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKI-CNGRLTAASFCNLGIIKVGNC 752 (840)
Q Consensus 687 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~l~~L~~L~l~~C 752 (840)
+|+.|++.+|..-..-...+.......+|+|+.|.+.++..-..- .....+....|.|++|+|++|
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 777777777652110000000001233677777777664321110 000112234667777777774
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.5e-05 Score=88.02 Aligned_cols=183 Identities=15% Similarity=0.200 Sum_probs=109.2
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCcE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKL-------------------FDEV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 138 (840)
.|....+++|.+..++.+..++..+... .+.++|+.|+||||+|+.+++....... |.-+
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 4566777899999999999998876554 6789999999999999999887643211 1112
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEE
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVL 216 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~il 216 (840)
+++..+....++++ +++++..... -..+++-++|+|+++... ..+.+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd~i-r~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDAM-RELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHHH-HHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 33322222222221 1222221110 002556799999997553 2333433343333455666
Q ss_pred EeeCCc-chhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHH
Q 003192 217 LTSRSR-GVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIA 281 (840)
Q Consensus 217 iTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 281 (840)
++|.+. .+..........+++.+++.++..+.+.+.+...+ ....++....|++.++|.+.-
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg---i~~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN---IPFDATALQLLARAAAGSMRD 216 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHH
Confidence 655443 33211112234789999999999888877643322 122345678899999997753
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=3.6e-05 Score=85.55 Aligned_cols=187 Identities=14% Similarity=0.164 Sum_probs=112.3
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCC------------------CC-cE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKL------------------FD-EV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------F~-~~ 138 (840)
+|....+++|.+...+.+...+..+... ++.++|+.|+||||+|+.+++..-.... ++ .+
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 4566778999999999999998876655 6689999999999999999887642211 11 12
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEE
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVL 216 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~il 216 (840)
+.++.+....+.++. ++++..... -..+++-++|+|+++... ..+.+...+......+++|
T Consensus 89 ~eldaas~~gId~IR-elie~~~~~----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 89 IEMDAASNRGIDDIR-ELIEQTKYK----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred EEeccccccCHHHHH-HHHHHHhhC----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 222222211222221 111111000 001455689999996542 2334433333334456777
Q ss_pred EeeCCc-chhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 217 LTSRSR-GVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 217 iTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
++|.+. .+..........+++.+++.++..+.+.+.+...+. .-.++.+..|++.++|.+.-+..+
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 766653 222111223457899999999998888776433221 223567889999999988555443
No 104
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.23 E-value=1.6e-05 Score=86.22 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=99.1
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALS----N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+..+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++..... | +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch----
Confidence 3457899999988888764 1 124568999999999999999999976543 2 22221
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC----------------ccccCCccC--CCCC
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD----------------LETLGIPLG--DEHK 211 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~ 211 (840)
.++... ..+ ........+.+......+.+|++||++.... +..+...+. ....
T Consensus 190 ~~l~~~---~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRK---YIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHH---hhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 111111 010 0111223333333345678999999875310 111111111 1124
Q ss_pred CcEEEEeeCCcchhhcc----cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 212 GCKVLLTSRSRGVLSRE----MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+.+||.||......... ..-...+.+...+.++..++|+.++......... ....+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence 56788888764332111 1224478899999999999998875332211111 2457778887754
No 105
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.22 E-value=2.2e-05 Score=79.20 Aligned_cols=167 Identities=16% Similarity=0.086 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccCh
Q 003192 90 ISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESE 169 (840)
Q Consensus 90 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 169 (840)
...+..+..+......+.+.|+|++|+|||+|++.+++..... -..+.++++.....
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---------------------
Confidence 3455555555545555789999999999999999999876643 23466776532100
Q ss_pred hhHHHHHHHHHHcCCcEEEEEcccccc---cCccc-cCCccCC-CCCC-cEEEEeeCCcchh--------hcccCccceE
Q 003192 170 SGRARRLYARMKEEKKILVILDDIWAR---LDLET-LGIPLGD-EHKG-CKVLLTSRSRGVL--------SREMDSEINF 235 (840)
Q Consensus 170 ~~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~g-s~iliTtR~~~v~--------~~~~~~~~~~ 235 (840)
....+.+.+. +--+|++||+... .+|+. +...+.. ...| .++|+||+...-. ...+....++
T Consensus 87 --~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 87 --FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162 (235)
T ss_pred --hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence 0011222222 1247899999653 23432 1111111 1123 4689998865221 1113334689
Q ss_pred EccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 003192 236 LVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIA 286 (840)
Q Consensus 236 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 286 (840)
++++++.++-.+++.+++...+ ..-.+++..-|++.+.|..-++..+-
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~~---~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLRG---FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 9999999999999887654322 23346788889999988666555443
No 106
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.8e-08 Score=94.48 Aligned_cols=80 Identities=26% Similarity=0.284 Sum_probs=53.0
Q ss_pred CceeEEEecCCcCC--CCchhhhcccCCcEEEecCcccCCc--ccccCCCCCCEEeccCC-CCCCC--cHHHhccCCCCE
Q 003192 487 IELRVLDLTKMHLL--SLPSSLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEILSLSSS-DIEHL--PREIGRLSKLRL 559 (840)
Q Consensus 487 ~~L~~L~l~~~~~~--~lp~~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~-~l~~l--p~~i~~L~~L~~ 559 (840)
..|++|||++..++ .+-.-+..+.+|+.|.|.++.+.++ ..+.+-.+|+.|||+.| .+++. .--+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35888888888776 3444566777788888887777763 45666677777777765 55532 223456666666
Q ss_pred EecCCCC
Q 003192 560 LDLTNCS 566 (840)
Q Consensus 560 L~l~~c~ 566 (840)
|++++|-
T Consensus 265 LNlsWc~ 271 (419)
T KOG2120|consen 265 LNLSWCF 271 (419)
T ss_pred cCchHhh
Confidence 6666664
No 107
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.21 E-value=5.6e-06 Score=87.18 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=63.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC--ccHHHHHHHHHHHhCCCccccChhh------HHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI--PDIKKMQGQIADELGLFLCEESESG------RARR 175 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 175 (840)
....++|+|++|+|||||++.+++....+ +|+..+||.+.+. .++.++++.+...+-...-+.+... .+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34679999999999999999999988765 8999999998866 6899999998543321111111111 1111
Q ss_pred HH-HHHHcCCcEEEEEcccccc
Q 003192 176 LY-ARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 176 l~-~~l~~~k~~LlVlDdv~~~ 196 (840)
.. .....+++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 12 2223589999999999643
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.21 E-value=1.7e-05 Score=78.82 Aligned_cols=162 Identities=20% Similarity=0.208 Sum_probs=96.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEK 184 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 184 (840)
...+.|+|..|+|||.|.+.+++.......=..++++ +.+++...+...+.. +....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 4568999999999999999999987654222245666 455666666655533 12344555554 3
Q ss_pred cEEEEEcccccccC---ccc-cCCccCC-CCCCcEEEEeeCCcch-hh-------cccCccceEEccCCCHHHHHHHHHH
Q 003192 185 KILVILDDIWARLD---LET-LGIPLGD-EHKGCKVLLTSRSRGV-LS-------REMDSEINFLVGILSQEESWSLFQK 251 (840)
Q Consensus 185 ~~LlVlDdv~~~~~---~~~-l~~~l~~-~~~gs~iliTtR~~~v-~~-------~~~~~~~~~~l~~L~~~~~~~lf~~ 251 (840)
-=+|++||++.... |+. +...+.. ...|.+||+|++.... .. ........+++++.+.++-.+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 45899999976432 221 1111111 2346789999965422 11 1123345799999999999999998
Q ss_pred HHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 252 MVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
.+...+.. -.++++.-+++.+.+..-.+..+
T Consensus 178 ~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 178 KAKERGIE---LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHTT-----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHhCCC---CcHHHHHHHHHhhcCCHHHHHHH
Confidence 86543322 33567777888877666555443
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=3.6e-05 Score=87.45 Aligned_cols=200 Identities=12% Similarity=0.161 Sum_probs=114.9
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCc--EEEEEeCCCccHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKLFDE--VVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~ 155 (840)
.|....+++|++..++.+.+++..+... .+-++|+.|+||||+|+.+++.......... ..+ ..+....-.+.
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 5667778999999999999998876654 7889999999999999999987653311100 000 00111111122
Q ss_pred HHHHhCCCc-----cccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEee-CCcc
Q 003192 156 IADELGLFL-----CEESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTS-RSRG 223 (840)
Q Consensus 156 i~~~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt-R~~~ 223 (840)
|...-..+. ......+.+..+.+... .+++-++|+|+++... ..+.+...+..-...+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 221111100 00111222333333322 1345689999997553 2344443443334456666554 3334
Q ss_pred hhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 224 VLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 224 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
+..........+++.+++.++....+.+.+...+. .-..+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 43222233357899999999999888877533221 223467788999999988655443
No 110
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=5.3e-05 Score=86.77 Aligned_cols=184 Identities=11% Similarity=0.170 Sum_probs=112.4
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhcc---------------------CCCC
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGH---------------------KLFD 136 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~F~ 136 (840)
.|.....++|.+..++.+..++..+... .+.++|+.|+||||+|+.++...... .+|+
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 4566778999999999999999876654 58899999999999999988876421 1333
Q ss_pred cEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcE
Q 003192 137 EVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCK 214 (840)
Q Consensus 137 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 214 (840)
+..++.+....++++. ++++++.... . .+++-++|+|+++... .++.+...+..-..++.
T Consensus 92 -~~~ld~~~~~~vd~Ir-~li~~~~~~P---------------~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 -IHELDAASNNSVDDIR-NLIEQVRIPP---------------Q-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred -eEEecccccCCHHHHH-HHHHHHhhCc---------------c-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 2223322222222222 2222221100 0 1345688999987652 34444444443334566
Q ss_pred EEEee-CCcchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 003192 215 VLLTS-RSRGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIV 283 (840)
Q Consensus 215 iliTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 283 (840)
+|++| +...+..........+++.+++.++....+.+.+...+. .-..+.+..|++.++|...-+.
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 55544 444443322334567999999999999888876433221 2234567889999999765443
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=5.2e-05 Score=87.13 Aligned_cols=198 Identities=16% Similarity=0.134 Sum_probs=114.0
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|....+++|.+..++.+..++..+.+ ..+.++|+.|+||||+|+.+++......... ....++.....+.|.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 456677899999999999998876654 4678999999999999999998765321100 001112223333333
Q ss_pred HHhCCCcc-----ccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCC-cchh
Q 003192 158 DELGLFLC-----EESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRS-RGVL 225 (840)
Q Consensus 158 ~~l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~-~~v~ 225 (840)
.....+.. .....+.+..+.+.+. .+++-++|+|+++.. ...+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 22211110 0011112223332222 145678999998754 2344443333333345666665543 2332
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
.........+.+.+++.++....+.+.+...+. .-..+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 211223347888999999888888776543222 123467889999999988655443
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=6.3e-05 Score=85.95 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=109.2
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCC-CC---------------cEEEE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKL-FD---------------EVVFV 141 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~---------------~~~wv 141 (840)
+|....+++|.+..++.+..++..+.+ ..+-++|+.|+||||+|+.+++..-.... .. .++++
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 566777899999999999999886654 46789999999999999999887643211 00 01111
Q ss_pred EeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEE
Q 003192 142 DVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKV 215 (840)
Q Consensus 142 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 215 (840)
....... .+.++.+.+... .+++-++|+|+++.. ..+.++...+......+.+
T Consensus 93 daasn~~---------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tif 151 (725)
T PRK07133 93 DAASNNG---------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIF 151 (725)
T ss_pred eccccCC---------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEE
Confidence 1111111 112233333322 255679999998754 2344443333332334454
Q ss_pred EE-eeCCcchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 216 LL-TSRSRGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 216 li-TtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
|+ |++...+..........+++.+++.++..+.+...+...+. ....+.+..|++.++|.+.-+..
T Consensus 152 ILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 152 ILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred EEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 44 44444443222333458999999999998888776433221 22345678899999997754333
No 113
>PRK09087 hypothetical protein; Validated
Probab=98.16 E-value=3.7e-05 Score=76.81 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=86.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
..+.+.|||++|+|||+|++.+++... ..+++.. .+...+. ..+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~--------------------~~~~-- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAA--------------------NAAA-- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHH--------------------Hhhh--
Confidence 346799999999999999998887542 1244221 1111111 1111
Q ss_pred CcEEEEEccccccc-CccccCCccCC-CCCCcEEEEeeCCcchh--------hcccCccceEEccCCCHHHHHHHHHHHH
Q 003192 184 KKILVILDDIWARL-DLETLGIPLGD-EHKGCKVLLTSRSRGVL--------SREMDSEINFLVGILSQEESWSLFQKMV 253 (840)
Q Consensus 184 k~~LlVlDdv~~~~-~~~~l~~~l~~-~~~gs~iliTtR~~~v~--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 253 (840)
.-+|++||+.... +-+.+...+.. ...|..||+|++...-. .........+++++++.++-.+++++++
T Consensus 88 -~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 88 -EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 1278889996431 11112211111 23467788888743211 1123444689999999999999999886
Q ss_pred hcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 003192 254 AEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIA 286 (840)
Q Consensus 254 ~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 286 (840)
...+ ..-.+++..-|++.+.|..-++..+-
T Consensus 167 ~~~~---~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 167 ADRQ---LYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHcC---CCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 4322 22336678888888888776666433
No 114
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.4e-06 Score=60.13 Aligned_cols=40 Identities=38% Similarity=0.526 Sum_probs=22.9
Q ss_pred ceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCccc
Q 003192 488 ELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDIAV 527 (840)
Q Consensus 488 ~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~ 527 (840)
+|++|++++|.++.+|+.+++|++|++|++++|.+++++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4666666666666666556666666666666666554433
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=5.5e-05 Score=88.97 Aligned_cols=180 Identities=13% Similarity=0.153 Sum_probs=111.0
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCC---------------------
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFD--------------------- 136 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--------------------- 136 (840)
.|..+.+++|++..++.|..++..+.+ ..+.++|+.|+||||+|+.+.+.+...+...
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 456677899999999999999987665 4688999999999999999998875321110
Q ss_pred cEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHH----HcCCcEEEEEcccccc--cCccccCCccCCCC
Q 003192 137 EVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARM----KEEKKILVILDDIWAR--LDLETLGIPLGDEH 210 (840)
Q Consensus 137 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~ 210 (840)
.+++++......+++ +..+.+.+ ..+++-++|||+++.. ...+.|...+..-.
T Consensus 90 dv~eidaas~~~Vd~---------------------iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 90 DVTEIDAASHGGVDD---------------------ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred cEEEecccccCCHHH---------------------HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 122222211111221 22222221 1245568899999765 23444444444444
Q ss_pred CCcEEEEeeCC-cchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 211 KGCKVLLTSRS-RGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 211 ~gs~iliTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
..+.+|++|.+ ..+..........|++..++.++..+.+.+.+...+. .-..+....|++.++|.+..+
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 55666655543 3343222333457899999999988888776432221 223456678999999988433
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=7e-05 Score=82.80 Aligned_cols=169 Identities=13% Similarity=0.141 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
.-+.|+|..|+|||+|++.+++.......-..++++ +.+++...+...++... +....+.+.+. +.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~------~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH------KEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh------hHHHHHHHHhc--cC
Confidence 568899999999999999999976543212234555 33556666666654210 12333444443 34
Q ss_pred EEEEEccccccc---Cc-cccCCccCC-CCCCcEEEEeeCCcc-hhh-------cccCccceEEccCCCHHHHHHHHHHH
Q 003192 186 ILVILDDIWARL---DL-ETLGIPLGD-EHKGCKVLLTSRSRG-VLS-------REMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 186 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iliTtR~~~-v~~-------~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
-+||+||+.... .+ +.+...+.. ...|..||+|+.... ... ......-++.+++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 589999996432 11 222211111 123456888866432 110 11233457789999999999999988
Q ss_pred HhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 253 VAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
+...+. ...-.+++..-|++.++|.|..+.-+...+
T Consensus 288 ~~~~gl-~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 288 IKNQNI-KQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHhcCC-CCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 643221 113346788999999999998777655433
No 117
>PF14516 AAA_35: AAA-like domain
Probab=98.13 E-value=0.00027 Score=75.32 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=118.1
Q ss_pred CcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC-----ccHHHHHHHH
Q 003192 82 GYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI-----PDIKKMQGQI 156 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i 156 (840)
+..-.+.|...-+++.+.+.++ ...+.|.|+-.+|||+|...+.+..... .+ .++++++... .+.+.+.+.+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 3344568886677788877753 4689999999999999999999888765 34 3557766442 2455555555
Q ss_pred H----HHhCCCcccc-------ChhhHHHHHH-HHHH--cCCcEEEEEcccccccCcc----cc----C------CccCC
Q 003192 157 A----DELGLFLCEE-------SESGRARRLY-ARMK--EEKKILVILDDIWARLDLE----TL----G------IPLGD 208 (840)
Q Consensus 157 ~----~~l~~~~~~~-------~~~~~~~~l~-~~l~--~~k~~LlVlDdv~~~~~~~----~l----~------~~l~~ 208 (840)
. ++++....-. .......... +.+. .+++.+|++|+|+..-... .+ + ..-+.
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4 4444432100 0111222222 2222 2578999999997542211 11 1 10000
Q ss_pred CCCCcEEEEeeCCcchh----hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 209 EHKGCKVLLTSRSRGVL----SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 209 ~~~gs~iliTtR~~~v~----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
..+=+-|++.+...... .........++|++++.+|...|..++ .. .......+.|...+||+|.-+..
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~--~~-----~~~~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY--GL-----EFSQEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh--hc-----cCCHHHHHHHHHHHCCCHHHHHH
Confidence 01111122222111111 111233447899999999999999876 21 12233389999999999999999
Q ss_pred HHHHHhcc
Q 003192 285 IAKALREE 292 (840)
Q Consensus 285 ~~~~l~~~ 292 (840)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999753
No 118
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=8.4e-05 Score=82.21 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=107.3
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC---------------------CCC
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHK---------------------LFD 136 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~F~ 136 (840)
.|....+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++...... +++
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 456677899999999999999886665 5688999999999999999988764321 111
Q ss_pred cEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcE
Q 003192 137 EVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCK 214 (840)
Q Consensus 137 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 214 (840)
.+++.-.....++++ +++.+.+. ..-..+++-++|+|+++... ..+.+...+........
T Consensus 92 -~~~i~g~~~~gid~i-r~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 92 -VLEIDGASHRGIEDI-RQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred -eEEeeccccCCHHHH-HHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 112211111111111 11111110 00012456789999986542 23333333333334556
Q ss_pred EEEeeCC-cchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHH
Q 003192 215 VLLTSRS-RGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIA 281 (840)
Q Consensus 215 iliTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 281 (840)
+|++|.+ ..+..........+++.+++.++....+...+...+. .-.++.+..|++.++|.+.-
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRD 218 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHH
Confidence 6666533 3332222233457899999999988888776432221 22356788999999997643
No 119
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=6.7e-05 Score=84.78 Aligned_cols=200 Identities=11% Similarity=0.097 Sum_probs=112.4
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
+|....+++|.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++........+. ..+......+.|.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~ 80 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA-------TPCGVCESCVALA 80 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-------CcccccHHHHHhh
Confidence 4667778999999999999999876654 5789999999999999999987653211110 0011111111111
Q ss_pred HHhCC-------CccccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEee-CCcc
Q 003192 158 DELGL-------FLCEESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTS-RSRG 223 (840)
Q Consensus 158 ~~l~~-------~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTt-R~~~ 223 (840)
..-+. +.......+.+..+.+... .+++-++|+|+++.. ...+.+...+..-.....+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10000 0000001112222222221 245668999998754 23344443443333455555554 4444
Q ss_pred hhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChH-HHHHHHHH
Q 003192 224 VLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPI-AIVTIAKA 288 (840)
Q Consensus 224 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~~ 288 (840)
+..........+++.+++.++..+.+.+.+...+. .-..+....|++.++|.+. |+..+-..
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 43222233457999999999988888776433221 1234567788999999774 44444433
No 120
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.12 E-value=3.8e-05 Score=77.55 Aligned_cols=164 Identities=11% Similarity=0.072 Sum_probs=93.5
Q ss_pred HHHHHHHHhC-CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChh
Q 003192 92 TFKDITNALS-NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESES 170 (840)
Q Consensus 92 ~~~~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 170 (840)
.+..+.++.. ....+.+.|+|.+|+|||+||+.+++...... . .+++++...... . +
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~-~~~~i~~~~~~~------~----~---------- 85 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG-R-NARYLDAASPLL------A----F---------- 85 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-C-cEEEEehHHhHH------H----H----------
Confidence 3344444433 23456789999999999999999999764331 2 345554433110 0 0
Q ss_pred hHHHHHHHHHHcCCcEEEEEcccccccCc--cccCCccCC-CCCCc-EEEEeeCCcchhhc-------ccCccceEEccC
Q 003192 171 GRARRLYARMKEEKKILVILDDIWARLDL--ETLGIPLGD-EHKGC-KVLLTSRSRGVLSR-------EMDSEINFLVGI 239 (840)
Q Consensus 171 ~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~iliTtR~~~v~~~-------~~~~~~~~~l~~ 239 (840)
... ...-++|+||+.....+ ..+...+.. ...+. .||+|++....... .......+++.+
T Consensus 86 -------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 -------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred -------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 011 12347889999654221 122222211 12333 46666665332110 112235789999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 240 LSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 240 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
+++++-..++.+.+...+ ..-.++..+.+++...|++..+..+...+
T Consensus 157 l~~~~~~~~l~~~~~~~~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 157 LSDADKIAALKAAAAERG---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999887777765432222 22345678888889999998887776554
No 121
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.11 E-value=3.1e-05 Score=76.98 Aligned_cols=194 Identities=19% Similarity=0.180 Sum_probs=124.4
Q ss_pred ccccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEE-EEeCCCccHHHHHHH
Q 003192 77 LTLSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVF-VDVPQIPDIKKMQGQ 155 (840)
Q Consensus 77 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~ 155 (840)
-..|....++.|.+..+.-+.+.+.....+....+|++|.|||+-|..++...-..+.|.+.+- .++|......-+-..
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 3466777889999999999999998877889999999999999999999998877677876543 466655433211111
Q ss_pred H--HHHhCCCcc-ccChhhHHHHHHHHHHcCCc-EEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCCcchhhc-c
Q 003192 156 I--ADELGLFLC-EESESGRARRLYARMKEEKK-ILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRSRGVLSR-E 228 (840)
Q Consensus 156 i--~~~l~~~~~-~~~~~~~~~~l~~~l~~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~~~v~~~-~ 228 (840)
+ ..++..... ... ...++ -.+|||+++.. +.|.++..........++.++.+-.-..... .
T Consensus 109 ik~fakl~~~~~~~~~------------~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 109 IKNFAKLTVLLKRSDG------------YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred hcCHHHHhhccccccC------------CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 1 111111000 000 00123 47889999865 5688877766666666776655544332211 1
Q ss_pred cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHH
Q 003192 229 MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAG-LPIAIVTI 285 (840)
Q Consensus 229 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~ 285 (840)
...-.-|..++|.+++...-++..+..++ .+-..+..+.|++.++| +--|+.++
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~---v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEG---VDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 12223688999999988888877754332 23345677899999988 33444443
No 122
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.11 E-value=2.5e-05 Score=83.40 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=87.9
Q ss_pred cccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHH
Q 003192 78 TLSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 78 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 156 (840)
..|....+++|++...+.+..++..+.. .++.++|++|+||||+|+.+++..... +..++.+. .....+...+
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~-----~~~i~~~~-~~~~~i~~~l 88 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE-----VLFVNGSD-CRIDFVRNRL 88 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc-----ceEeccCc-ccHHHHHHHH
Confidence 3566677899999999999999886654 466669999999999999998876321 33444443 2222211111
Q ss_pred HHHhCCCccccChhhHHHHHHHHH-HcCCcEEEEEccccccc---CccccCCccCCCCCCcEEEEeeCCcchh-hcccCc
Q 003192 157 ADELGLFLCEESESGRARRLYARM-KEEKKILVILDDIWARL---DLETLGIPLGDEHKGCKVLLTSRSRGVL-SREMDS 231 (840)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iliTtR~~~v~-~~~~~~ 231 (840)
.. + .... ..+.+-++|+||++... ....+...+.....++++|+||...... ......
T Consensus 89 ~~-~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 89 TR-F----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HH-H----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 11 1 0000 01235688999997541 1122222233334567888888654322 111122
Q ss_pred cceEEccCCCHHHHHHHHHH
Q 003192 232 EINFLVGILSQEESWSLFQK 251 (840)
Q Consensus 232 ~~~~~l~~L~~~~~~~lf~~ 251 (840)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 23567777777777666554
No 123
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.10 E-value=3.7e-05 Score=83.76 Aligned_cols=172 Identities=16% Similarity=0.258 Sum_probs=96.9
Q ss_pred ccccchHHHHHHHHHHhC----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHH
Q 003192 84 QAFDSRISTFKDITNALS----N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIK 150 (840)
Q Consensus 84 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 150 (840)
..+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++..... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh----H
Confidence 346789998888888663 1 234678999999999999999999876532 232221 1
Q ss_pred HHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc------------Cc-cccCC---ccCC--CCCC
Q 003192 151 KMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL------------DL-ETLGI---PLGD--EHKG 212 (840)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~-~~l~~---~l~~--~~~g 212 (840)
++ .... .+. .......+.+......+.+|++||++... .. ..+.. .+.. ...+
T Consensus 200 ~l----~~~~----~g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 200 EL----VQKF----IGE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HH----hHhh----ccc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 11 1111 011 11223334444444567899999997531 00 01111 1111 1235
Q ss_pred cEEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 213 CKVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 213 s~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
.+||.||.......... .-...+.+++.+.++-.++|+.+........... ...+++.+.|.-
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 56777776654332111 1234689999999999999987743222111122 456677777643
No 124
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.09 E-value=9.1e-05 Score=75.04 Aligned_cols=195 Identities=18% Similarity=0.152 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhCC---CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC----cEEEEEeCCCccHHHHHHHHHHHhCC
Q 003192 90 ISTFKDITNALSN---PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFD----EVVFVDVPQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 90 ~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~~~~~i~~~l~~ 162 (840)
.+.++++.+.+.. ...+-+.|||.+|.|||++++++.+.......=+ .|+.|.+...++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 4556666666653 3456799999999999999999998764431111 36778889999999999999999998
Q ss_pred CccccChhh-HHHHHHHHHHcCCcEEEEEcccccccC--------ccccCCccCCCCCCcEEEEeeCCcchhhc----cc
Q 003192 163 FLCEESESG-RARRLYARMKEEKKILVILDDIWARLD--------LETLGIPLGDEHKGCKVLLTSRSRGVLSR----EM 229 (840)
Q Consensus 163 ~~~~~~~~~-~~~~l~~~l~~~k~~LlVlDdv~~~~~--------~~~l~~~l~~~~~gs~iliTtR~~~v~~~----~~ 229 (840)
......... .......-+..-+--+||+|++.+.-. .-.....+.+.-.=+-|.+-|++..-+-. -.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 765443322 233333444444457999999976411 00111122222233445555554322100 00
Q ss_pred CccceEEccCCCHH-HHHHHHHHHHhc--CCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 230 DSEINFLVGILSQE-ESWSLFQKMVAE--GDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 230 ~~~~~~~l~~L~~~-~~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
.....+.++....+ +...|+...... -.....-...+++..|...++|+.=-+..
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 11234555555443 444454332111 12233345678999999999998754443
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00014 Score=81.09 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=108.5
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCcE
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHK-------------------LFDEV 138 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 138 (840)
.|....+++|.+..+..+..++..+.. ..+.++|+.|+||||+|+.++....... .|..+
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 456667789999999999999986554 4667899999999999999988754210 01112
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCC
Q 003192 139 VFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKG 212 (840)
Q Consensus 139 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g 212 (840)
+++..+....+. .+..+.+... .+++-++|+|+++... ..+.+...+......
T Consensus 91 ~eidaas~~gvd---------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEIDAASNRGID---------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEeCccCCCHH---------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 222222111111 1222222221 2456799999987542 233333333333334
Q ss_pred cEEEEee-CCcchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 003192 213 CKVLLTS-RSRGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIA 286 (840)
Q Consensus 213 s~iliTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 286 (840)
..+|++| +...+..........+.+.+++.++....+...+...+. .-..+.+..|++.++|.+..+....
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555544 433332211223347899999999988888876533221 2234567888899999776554443
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.08 E-value=3.9e-05 Score=91.38 Aligned_cols=186 Identities=13% Similarity=0.126 Sum_probs=104.0
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCcEEE-EEeCCCccHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKL----FDEVVF-VDVPQIPDIKKMQ 153 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~~~ 153 (840)
.+....+++||++++.++++.|......-+.++|++|+||||+|+.+++....... .+..+| +.++.-..
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a----- 256 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA----- 256 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-----
Confidence 34566789999999999999998776677789999999999999999998753311 123333 33322100
Q ss_pred HHHHHHhCCCccccChhhHHHHHHHHHH-cCCcEEEEEccccccc-------Ccc--ccCCccCCCCCC-cEEEEeeCCc
Q 003192 154 GQIADELGLFLCEESESGRARRLYARMK-EEKKILVILDDIWARL-------DLE--TLGIPLGDEHKG-CKVLLTSRSR 222 (840)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-------~~~--~l~~~l~~~~~g-s~iliTtR~~ 222 (840)
+....++ -...+..+++... .+++.+|++|+++... +-+ .+..+ .-.+| -++|-+|...
T Consensus 257 -------g~~~~ge-~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp--~l~~G~l~~IgaTT~~ 326 (852)
T TIGR03345 257 -------GASVKGE-FENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP--ALARGELRTIAATTWA 326 (852)
T ss_pred -------ccccchH-HHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH--HhhCCCeEEEEecCHH
Confidence 0000000 1123333444443 2468999999987542 111 12212 22333 3455454432
Q ss_pred chh------hcccCccceEEccCCCHHHHHHHHHHHHhc-CCCCCCcchHHHHHHHHHHcCCCh
Q 003192 223 GVL------SREMDSEINFLVGILSQEESWSLFQKMVAE-GDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 223 ~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+.. .........+.+++++.+++.+++...... .......-.++....+++.+.+..
T Consensus 327 e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 327 EYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 210 011123358999999999999997544211 111111223455566666665543
No 127
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.08 E-value=3.3e-05 Score=91.41 Aligned_cols=160 Identities=15% Similarity=0.185 Sum_probs=92.9
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccC---CC-CcEEEEEeCCCccHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHK---LF-DEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~~~~ 154 (840)
.+...++++||+++++++++.|......-+.++|++|+|||++|+.+++...... .+ +..+|. + +...+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l-- 249 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL-- 249 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH--
Confidence 3455667999999999999999876666778999999999999999999874321 11 334442 1 11111
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc----------CccccCCccCCCCCCc-EEEE-eeCCc
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL----------DLETLGIPLGDEHKGC-KVLL-TSRSR 222 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs-~ili-TtR~~ 222 (840)
... ....+ .-...+..+.+.+...++.+|++|+++... +...+..+ .-.+|. ++|- ||+.+
T Consensus 250 --~a~--~~~~g-~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~--~l~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 250 --LAG--TKYRG-DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKP--ALSSGKLRCIGSTTYEE 322 (731)
T ss_pred --hhh--ccccc-hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHH--HHhCCCeEEEEecCHHH
Confidence 100 00001 112244555555554567999999997431 11111111 112332 3443 44411
Q ss_pred ---chh--hcccCccceEEccCCCHHHHHHHHHHH
Q 003192 223 ---GVL--SREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 223 ---~v~--~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
... .........+.+++++.++..++++..
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHH
Confidence 000 001122347899999999999999865
No 128
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=1.8e-06 Score=99.58 Aligned_cols=126 Identities=20% Similarity=0.268 Sum_probs=92.2
Q ss_pred cccccEEeecccCC--CCCCCcC--CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcE
Q 003192 439 LKFCTAISLHKCDV--NELPEEL--ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRT 514 (840)
Q Consensus 439 ~~~~~~l~l~~~~~--~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~ 514 (840)
..++++|++++... ..-|..+ .+|+|++|.+.+-.+...--...+.++++|+.||+|+++++.+ .++++|+||+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 35788888887543 1222222 6899999999876554332334577899999999999999888 78999999999
Q ss_pred EEecCcccCC---cccccCCCCCCEEeccCCCCCCCcHH-------HhccCCCCEEecCCC
Q 003192 515 LCLDQSVLGD---IAVIGELKQLEILSLSSSDIEHLPRE-------IGRLSKLRLLDLTNC 565 (840)
Q Consensus 515 L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~-------i~~L~~L~~L~l~~c 565 (840)
|.+++=.+.. +..+.+|++|++||+|...-..-+.- -..|++||.||.++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 9998877765 56788899999999998744433311 134888999998873
No 129
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00013 Score=82.63 Aligned_cols=196 Identities=12% Similarity=0.113 Sum_probs=111.2
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|....+++|.+..++.+..++.++... .+.++|+.|+||||+|+.+++.......... ..+......+.|.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~ 83 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSID 83 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHH
Confidence 4667778999999999999999876554 6889999999999999999987653211100 0000000111111
Q ss_pred HHhCCC---ccc--cChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCC-cchh
Q 003192 158 DELGLF---LCE--ESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRS-RGVL 225 (840)
Q Consensus 158 ~~l~~~---~~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~-~~v~ 225 (840)
..-..+ ..+ ....+.+..+.+.+. .+++-++|+|+++... .++.+...+......+.+|++|.+ ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 100000 000 011112222222111 2456789999987553 344454444443445666655543 3332
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
.........++..+++.++..+.+.+.+...+ ..-.++.+..|++.++|.+..+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg---i~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ---IKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 22122334689999999998888877643322 123356778899999998754433
No 130
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=6.4e-07 Score=99.14 Aligned_cols=122 Identities=24% Similarity=0.367 Sum_probs=81.9
Q ss_pred cccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecC
Q 003192 441 FCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQ 519 (840)
Q Consensus 441 ~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~ 519 (840)
.+..+++..+.+..+-..+ .+.+|..|++..|.+... .. .+..+++|++|++++|.|+.+. .+..+..|+.|++++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~-~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-EN-LLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhc-cc-chhhhhcchheecccccccccc-chhhccchhhheecc
Confidence 3444445555555422222 567777777777766432 21 1456778888888888877664 356666788888888
Q ss_pred cccCCcccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCC
Q 003192 520 SVLGDIAVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNC 565 (840)
Q Consensus 520 ~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c 565 (840)
|.+..+..+..+++|+.+++++|.++.++.. ...+.+|+.+++.++
T Consensus 150 N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 150 NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 8887777777788888888888877766653 467777777777773
No 131
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=4.7e-07 Score=100.17 Aligned_cols=135 Identities=24% Similarity=0.281 Sum_probs=105.6
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCcccccCCCCCCEEec
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILSL 539 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L 539 (840)
.+..+..+.+..|.+.. + .+.+..+++|..|++.+|.+..+...+..+++|++|++++|.|+.+..+..+..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~-~-~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-I-LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhh-h-hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 45566666677676643 1 122678999999999999999887768899999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCc
Q 003192 540 SSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRG 612 (840)
Q Consensus 540 ~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 612 (840)
++|.|+.++. +..+++|+.+++++| .+..++.. . +..+.+|+.+.+..|.+..+...
T Consensus 148 ~~N~i~~~~~-~~~l~~L~~l~l~~n-~i~~ie~~-------------~-~~~~~~l~~l~l~~n~i~~i~~~ 204 (414)
T KOG0531|consen 148 SGNLISDISG-LESLKSLKLLDLSYN-RIVDIEND-------------E-LSELISLEELDLGGNSIREIEGL 204 (414)
T ss_pred ccCcchhccC-CccchhhhcccCCcc-hhhhhhhh-------------h-hhhccchHHHhccCCchhcccch
Confidence 9999998764 666999999999995 44444321 1 36677888888888877665543
No 132
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=2.4e-05 Score=83.06 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=32.6
Q ss_pred CCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCC
Q 003192 485 GMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTN 564 (840)
Q Consensus 485 ~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 564 (840)
.+.+++.|++++|.++.+|. -..+|+.|.+++|. +++.+|..+ ..+|++|++++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~---------------------nLtsLP~~L--P~nLe~L~Ls~ 103 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCN---------------------NLTTLPGSI--PEGLEKLTVCH 103 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCC---------------------CcccCCchh--hhhhhheEccC
Confidence 35666666666666666652 11235555554433 344444333 23566666666
Q ss_pred CCCCccccc
Q 003192 565 CSKLKSIPP 573 (840)
Q Consensus 565 c~~l~~lp~ 573 (840)
|..+..+|+
T Consensus 104 Cs~L~sLP~ 112 (426)
T PRK15386 104 CPEISGLPE 112 (426)
T ss_pred ccccccccc
Confidence 555555554
No 133
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.01 E-value=5.9e-05 Score=77.73 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=68.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEK 184 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 184 (840)
..-+.++|++|+||||+|+.+++.......-....++.++.. ++.. .. .+.. ......+++.. .
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~----~~----~g~~-~~~~~~~~~~a---~ 105 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVG----EY----IGHT-AQKTREVIKKA---L 105 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhh----hh----ccch-HHHHHHHHHhc---c
Confidence 456789999999999999999987642211111123333221 1111 10 1111 11122222222 2
Q ss_pred cEEEEEccccccc----------CccccCCccCCCCCCcEEEEeeCCcchh------hcccC-ccceEEccCCCHHHHHH
Q 003192 185 KILVILDDIWARL----------DLETLGIPLGDEHKGCKVLLTSRSRGVL------SREMD-SEINFLVGILSQEESWS 247 (840)
Q Consensus 185 ~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iliTtR~~~v~------~~~~~-~~~~~~l~~L~~~~~~~ 247 (840)
.-+|++|+++... ..+.+...+........+++++.....- ..... ....+.+++++.++-.+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 3588999997521 1222322222233334555555443220 00011 12357899999999999
Q ss_pred HHHHHHh
Q 003192 248 LFQKMVA 254 (840)
Q Consensus 248 lf~~~~~ 254 (840)
++++.+.
T Consensus 186 Il~~~~~ 192 (261)
T TIGR02881 186 IAERMVK 192 (261)
T ss_pred HHHHHHH
Confidence 9987753
No 134
>PRK05642 DNA replication initiation factor; Validated
Probab=98.01 E-value=5.1e-05 Score=76.50 Aligned_cols=153 Identities=17% Similarity=0.216 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
..+.|+|.+|+|||.|++.+++....+ -..++|++... +... ...+.+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~~-- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQY-- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhhC--
Confidence 678999999999999999999876543 23467775432 2111 11233334322
Q ss_pred EEEEEcccccc---cCccc-cCCccCC-CCCCcEEEEeeCCcchhhc--------ccCccceEEccCCCHHHHHHHHHHH
Q 003192 186 ILVILDDIWAR---LDLET-LGIPLGD-EHKGCKVLLTSRSRGVLSR--------EMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 186 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iliTtR~~~v~~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
=+||+||+... ..|+. +...+.. ...|.+||+|++...-.-. ......++++++++.++-.++++++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 26889999633 23432 2222211 2346678888875432110 1122357899999999999999876
Q ss_pred HhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 003192 253 VAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKA 288 (840)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 288 (840)
+...+. .-.+++..-|++.+.|..-++..+-..
T Consensus 179 a~~~~~---~l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 179 ASRRGL---HLTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHcCC---CCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 543221 223578888999888876665554433
No 135
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00021 Score=81.97 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=112.9
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|.....++|.+..+..|..++..+.. ..+.++|+.|+||||+|+.+++.......... ....+...+..+.+.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIA 85 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHh
Confidence 345667788999999999998886643 57889999999999999999998754311110 001122223333333
Q ss_pred HHhCCCcc-----ccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCCc-chh
Q 003192 158 DELGLFLC-----EESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRSR-GVL 225 (840)
Q Consensus 158 ~~l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~~-~v~ 225 (840)
.....+.. .....+.++.+.+... .+++-++|+|+++.. ...+.+...+..-...+.+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 22211110 0011122333333322 145568999999754 23444444443333345555555433 332
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
.........+++..++.++....+.+.+...+. .-..+.+..|++.++|.+..+..+
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi---~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI---EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222233356788899998888777766432211 122456889999999988655443
No 136
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.7e-06 Score=84.84 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=37.5
Q ss_pred CCCceeEEEecCCcCCC---CchhhhcccCCcEEEecCcccCC-cccc-cCCCCCCEEeccCCCCC--CCcHHHhccCCC
Q 003192 485 GMIELRVLDLTKMHLLS---LPSSLHLLVNLRTLCLDQSVLGD-IAVI-GELKQLEILSLSSSDIE--HLPREIGRLSKL 557 (840)
Q Consensus 485 ~l~~L~~L~l~~~~~~~---lp~~i~~L~~L~~L~L~~~~l~~-~~~i-~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L 557 (840)
.++.++.|||.+|.++. +-.-+.+|++|++|+|+.|++.. +.++ ..+.+|++|-|.++.+. .....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34455555555555542 22233455555555555555443 2222 23445555555555333 333334445555
Q ss_pred CEEecCC
Q 003192 558 RLLDLTN 564 (840)
Q Consensus 558 ~~L~l~~ 564 (840)
+.|+++.
T Consensus 149 telHmS~ 155 (418)
T KOG2982|consen 149 TELHMSD 155 (418)
T ss_pred hhhhhcc
Confidence 5555544
No 137
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=1.9e-07 Score=101.89 Aligned_cols=123 Identities=24% Similarity=0.191 Sum_probs=102.5
Q ss_pred cccccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEE
Q 003192 439 LKFCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLC 516 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~ 516 (840)
|..+...+.++|.+..+...+ -++.|++|+|+.|.+.. . .++..+++|+.|||++|.+..+|. +...++ |+.|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-V--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-h--HHHHhcccccccccccchhccccccchhhhh-heeee
Confidence 456778888888888777777 56899999999998743 2 258899999999999999998886 444555 99999
Q ss_pred ecCcccCCcccccCCCCCCEEeccCCCCC---CCcHHHhccCCCCEEecCCCC
Q 003192 517 LDQSVLGDIAVIGELKQLEILSLSSSDIE---HLPREIGRLSKLRLLDLTNCS 566 (840)
Q Consensus 517 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~l~~c~ 566 (840)
+++|.++.+..+.+|++|+.||+++|-|. ++-. ++.|..|+.|+|.+|.
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999665 4422 7889999999999964
No 138
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.97 E-value=3.5e-05 Score=82.78 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=72.9
Q ss_pred ccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCC
Q 003192 84 QAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLF 163 (840)
Q Consensus 84 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 163 (840)
..+++.+..++.++..|... +.|.++|++|+|||++|+.+++.......|+.+.||++++..+..++...+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 34667788889999988754 568889999999999999999988766678889999999988877665422100 000
Q ss_pred ccccChhhHHHHHHHHHH--cCCcEEEEEcccccc
Q 003192 164 LCEESESGRARRLYARMK--EEKKILVILDDIWAR 196 (840)
Q Consensus 164 ~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 196 (840)
. ....+...++.+... .++++++|+|++...
T Consensus 252 y--~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 F--RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred e--EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 001112222222222 246799999998644
No 139
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00013 Score=83.54 Aligned_cols=197 Identities=12% Similarity=0.140 Sum_probs=109.1
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|..+..++|.+...+.+..++..+.+ ..+.++|+.|+||||+|+.+++........+. ..+......+.|.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 466777899999999999999887665 46789999999999999999887643211100 0011111111111
Q ss_pred HHhCCCc---c--ccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEee-CCcchh
Q 003192 158 DELGLFL---C--EESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTS-RSRGVL 225 (840)
Q Consensus 158 ~~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt-R~~~v~ 225 (840)
..-..+. + .....+.+..+.+.+. .+++-++|+|+++... ..+.+...+..-...+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 1000000 0 0001112222332221 2445688999997542 2333433333333455555544 444443
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh-HHHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP-IAIVTI 285 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~ 285 (840)
.........+++.+++.++....+...+...+. .-..+....|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222233457888999999888877765432221 223456788999999865 444444
No 140
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=9.7e-07 Score=76.54 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=86.0
Q ss_pred ccEEeecccCCCCCCCcC----CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEe
Q 003192 442 CTAISLHKCDVNELPEEL----ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCL 517 (840)
Q Consensus 442 ~~~l~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L 517 (840)
...+++++|.+-.+++.. ...+|...++++|.+ ..+|..+-.+++.++.|++++|.+..+|..+..++.||.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 445667777665555432 566788888888877 578888777888899999999999999988999999999999
Q ss_pred cCcccCC-cccccCCCCCCEEeccCCCCCCCcHHH
Q 003192 518 DQSVLGD-IAVIGELKQLEILSLSSSDIEHLPREI 551 (840)
Q Consensus 518 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i 551 (840)
+.|++.. |..+..|.+|-+|+..+|.+.++|-.+
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 9998766 677777888888888888888887663
No 141
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.94 E-value=4.9e-05 Score=91.09 Aligned_cols=158 Identities=16% Similarity=0.248 Sum_probs=91.1
Q ss_pred CcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC---C-CcEEEEEeCCCccHHHHHHHHH
Q 003192 82 GYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKL---F-DEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
...+++||++++++++++|......-+.++|++|+|||++|+.++........ . +..+|. + +...+.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~---- 247 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL---- 247 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----
Confidence 35678999999999999998666666779999999999999999988753210 1 234553 1 221111
Q ss_pred HHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc---------CccccCCccCCCCCCcEEEEeeCCcchh---
Q 003192 158 DELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL---------DLETLGIPLGDEHKGCKVLLTSRSRGVL--- 225 (840)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iliTtR~~~v~--- 225 (840)
. +....++ -...+..+++.+.+.++.+|++|+++... +...+..+....+ .-++|.+|...+..
T Consensus 248 a--g~~~~ge-~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 248 A--GTKYRGE-FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHI 323 (821)
T ss_pred c--cCCCccH-HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHH
Confidence 1 1111111 12245556665555568999999996431 1111211111112 23444444433221
Q ss_pred ---hcccCccceEEccCCCHHHHHHHHHHH
Q 003192 226 ---SREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 226 ---~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
.........+.+...+.++...++...
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 011122346788888988888887643
No 142
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00031 Score=79.95 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=108.8
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPS-VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|.....++|++..++.+.+++..+. ...+-++|+.|+||||+|+.+++.......-+ ...++.....+.|.
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 46677889999999999999987654 35677899999999999999988764321100 01111112222222
Q ss_pred HHhCCCcc-----ccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEee-CCcchh
Q 003192 158 DELGLFLC-----EESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTS-RSRGVL 225 (840)
Q Consensus 158 ~~l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTt-R~~~v~ 225 (840)
.....+.. .....+.+..+.+... .+++-++|+|+++.. ..+..+...+..-.....+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 11110000 0011112233333322 245678899999754 23344433333323344445444 433332
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
.........++..+++.++..+.+...+...+. .-..+.+..|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 222233456888999999988888776432221 223466788888998877543
No 143
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=2.1e-05 Score=83.39 Aligned_cols=128 Identities=21% Similarity=0.277 Sum_probs=76.2
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCC-cCCCCchhhhcccCCcEEEecCc-ccCCcccccCCCCCCEE
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKM-HLLSLPSSLHLLVNLRTLCLDQS-VLGDIAVIGELKQLEIL 537 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~L~~L~~L~L~~~-~l~~~~~i~~L~~L~~L 537 (840)
.|.+++.|++++|.+ ..+|. --.+|+.|.+++| .+..+|..+ ..+|++|++++| .+..++ .+|+.|
T Consensus 50 ~~~~l~~L~Is~c~L-~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDI-ESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCC-cccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceE
Confidence 578999999998855 45552 1336999999985 456778655 357889999888 454422 346667
Q ss_pred eccCCC---CCCCcHHHhccCCCCEEecCCCCCC--ccccccccccccccccCChhhhhcC-CCCCeEEEEeecCccCCC
Q 003192 538 SLSSSD---IEHLPREIGRLSKLRLLDLTNCSKL--KSIPPNVERLNIERSNASLDELKHL-SRLTTLEIHIQGAKILPR 611 (840)
Q Consensus 538 ~L~~~~---l~~lp~~i~~L~~L~~L~l~~c~~l--~~lp~~l~~L~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~ 611 (840)
+++++. +..+|.+ |+.|.+.+++.. ..+|. .+ ++|+.|.++++....+|.
T Consensus 118 ~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~------------------~LPsSLk~L~Is~c~~i~LP~ 173 (426)
T PRK15386 118 EIKGSATDSIKNVPNG------LTSLSINSYNPENQARIDN------------------LISPSLKTLSLTGCSNIILPE 173 (426)
T ss_pred EeCCCCCcccccCcch------Hhheecccccccccccccc------------------ccCCcccEEEecCCCcccCcc
Confidence 776654 3455553 344444332211 00010 11 468888887776655554
Q ss_pred ccccccCcEEEEE
Q 003192 612 GLFSKKLERYKIL 624 (840)
Q Consensus 612 ~~~~~~L~~L~l~ 624 (840)
.+. .+|+.|.+.
T Consensus 174 ~LP-~SLk~L~ls 185 (426)
T PRK15386 174 KLP-ESLQSITLH 185 (426)
T ss_pred ccc-ccCcEEEec
Confidence 432 456666553
No 144
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.001 Score=65.71 Aligned_cols=181 Identities=15% Similarity=0.187 Sum_probs=103.8
Q ss_pred ccCCcccccchHHHHHHHHHHhC-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALS-----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQ 153 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 153 (840)
.|....+|+|.++..+++-=.+. +...-=|-++|++|.||||||.-+++...+. +. + .+.+-++
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~--tsGp~le--- 89 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----I--TSGPALE--- 89 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----e--ccccccc---
Confidence 46677889999988887766654 3445678999999999999999999998876 21 1 1111111
Q ss_pred HHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc-C--------ccccCC-ccCCCCCCcE---------
Q 003192 154 GQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL-D--------LETLGI-PLGDEHKGCK--------- 214 (840)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-~--------~~~l~~-~l~~~~~gs~--------- 214 (840)
..+....++..+. ..=++++|.++... . .+.+.. ..-..++++|
T Consensus 90 ---------------K~gDlaaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 90 ---------------KPGDLAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred ---------------ChhhHHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 1112222333332 22345556654321 0 011000 0001122232
Q ss_pred --EEEeeCCcchhhc-ccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHh
Q 003192 215 --VLLTSRSRGVLSR-EMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALR 290 (840)
Q Consensus 215 --iliTtR~~~v~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~ 290 (840)
|=.|||.-.+... .-.-..+.+++-.+.+|-.++..+.+..- ...-.++.+.+|+++..|-|.-..-+-+..+
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l---~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL---GIEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh---CCCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3358887654311 01112366788888899888888774221 2233456789999999999976555554444
No 145
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00047 Score=72.38 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=110.6
Q ss_pred cccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC-------------CCCcEEEEEeCCCcc
Q 003192 83 YQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHK-------------LFDEVVFVDVPQIPD 148 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------~F~~~~wv~vs~~~~ 148 (840)
..+++|.+..++.+...+..+.+ ...-++|+.|+||+++|..+++..-... ...-..|+.-....+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 34688999999999999987765 7999999999999999999988764321 111234442110000
Q ss_pred HHHHHHHHHHHhCC--CccccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEee-
Q 003192 149 IKKMQGQIADELGL--FLCEESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTS- 219 (840)
Q Consensus 149 ~~~~~~~i~~~l~~--~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt- 219 (840)
-..+-..-++..+. .....-..+.++.+.+.+. .+++-++|+|+++... ...++...+..-. .+.+|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 00000011111110 0001111223444544443 2566789999986542 2333333332222 33455444
Q ss_pred CCcchhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 220 RSRGVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 220 R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
....+..........+.+.+++.++..+.+.+.... .........++..++|.|..+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~------~~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE------EILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc------ccchhHHHHHHHHcCCCHHHHHHH
Confidence 444444433444568999999999999999876211 111112467899999999765543
No 146
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.91 E-value=0.00083 Score=75.12 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=110.2
Q ss_pred HHHHHHHHhCCC--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccCh
Q 003192 92 TFKDITNALSNP--SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESE 169 (840)
Q Consensus 92 ~~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 169 (840)
....+..+...+ ...-+.|+|++|+|||+||+.+++....+..-..+++++. .++...+...+...
T Consensus 133 a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------ 200 (450)
T PRK00149 133 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN------ 200 (450)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC------
Confidence 344444444332 2356899999999999999999998865421123556643 33334444444211
Q ss_pred hhHHHHHHHHHHcCCcEEEEEcccccccC---c-cccCCccCC-CCCCcEEEEeeCCcc--hh------hcccCccceEE
Q 003192 170 SGRARRLYARMKEEKKILVILDDIWARLD---L-ETLGIPLGD-EHKGCKVLLTSRSRG--VL------SREMDSEINFL 236 (840)
Q Consensus 170 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~iliTtR~~~--v~------~~~~~~~~~~~ 236 (840)
....+.+.+. +.-+||+||+..... + +.+...+.. ...|..||+||.... +. .........++
T Consensus 201 --~~~~~~~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~ 276 (450)
T PRK00149 201 --TMEEFKEKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVD 276 (450)
T ss_pred --cHHHHHHHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEE
Confidence 1233444444 245899999964311 1 122111111 123445777776532 10 11223335789
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH------hcc--CHHHHHHHHHHh
Q 003192 237 VGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL------REE--NLFEWKNALLEL 304 (840)
Q Consensus 237 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l------~~~--~~~~w~~~l~~l 304 (840)
+++.+.++-.+++++.+...+ ..-.+++...|++.+.|..-.+.-+-..+ .++ +....++++..+
T Consensus 277 i~~pd~~~r~~il~~~~~~~~---~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 277 IEPPDLETRIAILKKKAEEEG---IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred ecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 999999999999998864322 22345678889999998776443322222 122 566677777764
No 147
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.5e-05 Score=56.05 Aligned_cols=37 Identities=32% Similarity=0.505 Sum_probs=17.4
Q ss_pred CCcEEEecCcccCCccc-ccCCCCCCEEeccCCCCCCC
Q 003192 511 NLRTLCLDQSVLGDIAV-IGELKQLEILSLSSSDIEHL 547 (840)
Q Consensus 511 ~L~~L~L~~~~l~~~~~-i~~L~~L~~L~L~~~~l~~l 547 (840)
+|++|++++|.++.++. +++|++|++|++++|.|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555333 55555555555555554443
No 148
>CHL00181 cbbX CbbX; Provisional
Probab=97.89 E-value=0.00027 Score=73.31 Aligned_cols=133 Identities=11% Similarity=0.113 Sum_probs=71.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
..+.++|++|+||||+|+.+++.......-...-|+.++. .++ ...+. +... .....+.+.. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~----g~~~-~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYI----GHTA-PKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHh----ccch-HHHHHHHHHc---cC
Confidence 3578899999999999999988754321111122444442 122 22111 1111 1122233322 23
Q ss_pred EEEEEcccccc-----------cCccccCCccCCCCCCcEEEEeeCCcchhh-------cccCccceEEccCCCHHHHHH
Q 003192 186 ILVILDDIWAR-----------LDLETLGIPLGDEHKGCKVLLTSRSRGVLS-------REMDSEINFLVGILSQEESWS 247 (840)
Q Consensus 186 ~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iliTtR~~~v~~-------~~~~~~~~~~l~~L~~~~~~~ 247 (840)
-+|++|++... +..+.+...+.....+.+||+++....+.. -.-.....+.+++++.++-.+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 58999999642 111222223333445566777765433210 001123478999999999999
Q ss_pred HHHHHHh
Q 003192 248 LFQKMVA 254 (840)
Q Consensus 248 lf~~~~~ 254 (840)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888754
No 149
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.89 E-value=0.00026 Score=73.57 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcE
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKI 186 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 186 (840)
-|.++|++|+||||+|+.+++...........-|+.++. .++ ...+.. ... .....+.+.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g----~~~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG----HTA-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc----cch-HHHHHHHHHc---cCc
Confidence 588999999999999998888765432222112444442 122 211111 111 1222333332 236
Q ss_pred EEEEcccccc-----------cCccccCCccCCCCCCcEEEEeeCCcchhh-ccc------CccceEEccCCCHHHHHHH
Q 003192 187 LVILDDIWAR-----------LDLETLGIPLGDEHKGCKVLLTSRSRGVLS-REM------DSEINFLVGILSQEESWSL 248 (840)
Q Consensus 187 LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iliTtR~~~v~~-~~~------~~~~~~~l~~L~~~~~~~l 248 (840)
+|++|++... +.++.+...+.....+.+||+++.....-. ... .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 112223333333444566666665432210 000 1134689999999999999
Q ss_pred HHHHH
Q 003192 249 FQKMV 253 (840)
Q Consensus 249 f~~~~ 253 (840)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 98874
No 150
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.82 E-value=0.0013 Score=72.51 Aligned_cols=180 Identities=20% Similarity=0.191 Sum_probs=103.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
..+.|+|++|+|||+||+.+++....+..=..+++++ ..++...+...+... ....+.+.+.. .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN--------KMEEFKEKYRS--V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC--------CHHHHHHHHHh--C
Confidence 4689999999999999999999876541112356664 334444455444321 12233444432 3
Q ss_pred EEEEEcccccccC---c-cccCCccCC-CCCCcEEEEeeCCcc-hhh-------cccCccceEEccCCCHHHHHHHHHHH
Q 003192 186 ILVILDDIWARLD---L-ETLGIPLGD-EHKGCKVLLTSRSRG-VLS-------REMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 186 ~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~iliTtR~~~-v~~-------~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
-+||+||+..... + +.+...+.. ...|..+|+|+.... ... ..+.....+.+++.+.++-.+++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4889999975321 1 112111111 123456777775421 111 11222346899999999999999988
Q ss_pred HhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHh------cc--CHHHHHHHHHHh
Q 003192 253 VAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALR------EE--NLFEWKNALLEL 304 (840)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~------~~--~~~~w~~~l~~l 304 (840)
+...+. .-.+++...|++.+.|.+-.+.-+-..+. ++ +....+.++...
T Consensus 281 ~~~~~~---~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 281 AEEEGL---ELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHcCC---CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 643322 22367788899999887765443322221 22 555666666653
No 151
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.81 E-value=7.4e-06 Score=82.62 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=68.2
Q ss_pred hcCCCceeEEEecCCcCC-CCc----hhhhcccCCcEEEecCcccCCc---------------ccccCCCCCCEEeccCC
Q 003192 483 FAGMIELRVLDLTKMHLL-SLP----SSLHLLVNLRTLCLDQSVLGDI---------------AVIGELKQLEILSLSSS 542 (840)
Q Consensus 483 ~~~l~~L~~L~l~~~~~~-~lp----~~i~~L~~L~~L~L~~~~l~~~---------------~~i~~L~~L~~L~L~~~ 542 (840)
+.++++|++||||+|.+. .-+ .-+.++..|+.|.|.+|.+... ..++.-+.|+++....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 456667777777777664 222 2455667777777777765431 12445567788877777
Q ss_pred CCCCCc-----HHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCc
Q 003192 543 DIEHLP-----REIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 543 ~l~~lp-----~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 607 (840)
.+..-+ ..+...+.|+.+.++.|. .-|.++ ......+.++++|+.|++..|-++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~---I~~eG~--------~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNG---IRPEGV--------TALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEeccc---ccCchh--------HHHHHHHHhCCcceeeecccchhh
Confidence 766433 335556777777776642 122222 112345677788888888776554
No 152
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=9.1e-06 Score=93.80 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=100.6
Q ss_pred CCCceEEEecCCCCCC-CCChhhhcCCCceeEEEecCCcCC--CCchhhhcccCCcEEEecCcccCCcccccCCCCCCEE
Q 003192 461 CPQLKFFYMYPKDPAL-KIPDKFFAGMIELRVLDLTKMHLL--SLPSSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEIL 537 (840)
Q Consensus 461 ~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L 537 (840)
-.+|++|++++..... .-|...-..+|.|+.|.+++-.+. .+-.-..++++|+.||+|+++++.+..+++|++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 3688999998765432 334455567999999999997765 3344556889999999999999999999999999999
Q ss_pred eccCCCCCCCc--HHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCc
Q 003192 538 SLSSSDIEHLP--REIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 538 ~L~~~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 607 (840)
.+.+-.+..-+ ..+.+|++|++||+|.-.. ..-+. +...+ ++--..|++||.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~-~~~~~-ii~qY-------lec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKN-NDDTK-IIEQY-------LECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccc-ccchH-HHHHH-------HHhcccCccccEEecCCcchh
Confidence 99987776432 3578999999999998433 22221 11111 111235889999999976654
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.79 E-value=0.00022 Score=78.96 Aligned_cols=159 Identities=17% Similarity=0.290 Sum_probs=88.9
Q ss_pred CcccccchHHHHHHHHHHhC----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccC---CCCcEEEEEeCC
Q 003192 82 GYQAFDSRISTFKDITNALS----N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHK---LFDEVVFVDVPQ 145 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~ 145 (840)
.+..+.|.+..++++.+.+. . ...+-|.++|++|+|||++|+.+++.....- ......|+++..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 34557788888888877753 1 1345689999999999999999999875331 112344555443
Q ss_pred CccHHHHHHHHHHHhCCCccccChhhHHHHHHHHH----HcCCcEEEEEccccccc---------Cc-----cccCCccC
Q 003192 146 IPDIKKMQGQIADELGLFLCEESESGRARRLYARM----KEEKKILVILDDIWARL---------DL-----ETLGIPLG 207 (840)
Q Consensus 146 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~---------~~-----~~l~~~l~ 207 (840)
.. + +.. ..++.. ..+..+++.. ..+++++|++|+++... +. ..+...+.
T Consensus 260 ~e----L----l~k----yvGete-~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 PE----L----LNK----YVGETE-RQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred hh----h----ccc----ccchHH-HHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 21 1 000 001111 1122222222 23578999999997431 11 11211121
Q ss_pred C--CCCCcEEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHH
Q 003192 208 D--EHKGCKVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMV 253 (840)
Q Consensus 208 ~--~~~gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~ 253 (840)
. ...+..||.||-......... .-...++++..+.++..++|..++
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 1 113444555665544332111 223468999999999999999884
No 154
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=9.4e-07 Score=96.63 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=102.5
Q ss_pred cccccEEeecccCCCCCCCcCCC-CCceEEEecCCC---------CCCCCChhhhcCCCceeEEEecCCcCCCCchhhhc
Q 003192 439 LKFCTAISLHKCDVNELPEELEC-PQLKFFYMYPKD---------PALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHL 508 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~~~-~~L~~L~l~~~~---------~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~ 508 (840)
.+.+|+|-+.++.+........+ ..|++|.....- ..+++..++ --..|.+.++++|.+..+-.++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 56788999988887654433222 234444432110 001111110 123577888888888888888888
Q ss_pred ccCCcEEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChh
Q 003192 509 LVNLRTLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLD 588 (840)
Q Consensus 509 L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~ 588 (840)
++.|+.|||+.|+++....+..|++|++|||++|.++.+|.---.-.+|+.|.+++ |.++.+ .
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL----------------~ 248 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTL----------------R 248 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhh----------------h
Confidence 89999999999999888888899999999999998888875211122488888887 444443 2
Q ss_pred hhhcCCCCCeEEEEeecCccCC
Q 003192 589 ELKHLSRLTTLEIHIQGAKILP 610 (840)
Q Consensus 589 ~l~~l~~L~~L~l~~~~~~~~~ 610 (840)
.+.+|.+|+.|++++|-+....
T Consensus 249 gie~LksL~~LDlsyNll~~hs 270 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHS 270 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcch
Confidence 3667788888888887665443
No 155
>PRK06620 hypothetical protein; Validated
Probab=97.79 E-value=0.00014 Score=72.04 Aligned_cols=137 Identities=18% Similarity=0.063 Sum_probs=79.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
+.+.|||++|+|||+|++.+.+.... .++. ..+.. . +... ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~------------------------~---~~~~--~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN------------------------E---EILE--KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc------------------------h---hHHh--cC
Confidence 56899999999999999987765421 1211 00000 0 0111 23
Q ss_pred EEEEEcccccccCccccCCccCC-CCCCcEEEEeeCCcchh------hcccCccceEEccCCCHHHHHHHHHHHHhcCCC
Q 003192 186 ILVILDDIWARLDLETLGIPLGD-EHKGCKVLLTSRSRGVL------SREMDSEINFLVGILSQEESWSLFQKMVAEGDC 258 (840)
Q Consensus 186 ~LlVlDdv~~~~~~~~l~~~l~~-~~~gs~iliTtR~~~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 258 (840)
-++++||++...+ ..+...+.. ...|..||+|++...-. ........++++++++.++-.+++++.+...+
T Consensus 87 d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~- 164 (214)
T PRK06620 87 NAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS- 164 (214)
T ss_pred CEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-
Confidence 5788899974321 111111100 14567899988865331 11123334799999999998888887754221
Q ss_pred CCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 259 IRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 259 ~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
..-.+++.+-|++.+.|.--++.-
T Consensus 165 --l~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 165 --VTISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred --CCCCHHHHHHHHHHccCCHHHHHH
Confidence 123367788888888775544433
No 156
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.79 E-value=0.00018 Score=86.22 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=45.0
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 80 SKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+....+++||+.++.++++.|......-+.++|++|+|||++|+.++.....
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4556779999999999999998776667789999999999999999988743
No 157
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.78 E-value=0.00064 Score=74.24 Aligned_cols=173 Identities=17% Similarity=0.206 Sum_probs=94.9
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALS----N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+.++.|.+..++++.+.+. . ...+-|.++|++|+|||++|+.+++..... | +.+..+.
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f---i~V~~se---- 252 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F---LRVVGSE---- 252 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E---EEEecch----
Confidence 3446678888877777663 1 134578899999999999999999976533 3 2221111
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC----------------ccccCCccC--CCCC
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD----------------LETLGIPLG--DEHK 211 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~ 211 (840)
+ .... .+. .......+++....+.+.+|+||+++.... +..+...+. ....
T Consensus 253 --L----~~k~----~Ge-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 --L----IQKY----LGD-GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred --h----hhhh----cch-HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 1 1110 001 111233344444445678999999863210 000111111 1123
Q ss_pred CcEEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 212 GCKVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+.+||.||.......... .-...+.++..+.++..++|..+........... ...++..+.|.-
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 567888877654442211 2234788999999999999987743222111222 345555665543
No 158
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.9e-06 Score=84.60 Aligned_cols=142 Identities=12% Similarity=0.008 Sum_probs=72.8
Q ss_pred hcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCc
Q 003192 659 LKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTA 738 (840)
Q Consensus 659 l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~ 738 (840)
-.+|+.|+++.|.+.+...-.+...++..|..|+|++|........ ......-++|+.|+|+++.+--.......-.
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt---v~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT---VAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh---HHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 4567777777776665544444445666777777777653322210 0111233566777777664321111111112
Q ss_pred ccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccc
Q 003192 739 ASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCS 810 (840)
Q Consensus 739 ~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 810 (840)
..+|+|.+|++++|..++.- -...+-.++.|++|.++.|..+.. ... -.+...++|..|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p---~~~---~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIP---ETL---LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCCh---HHe---eeeccCcceEEEEecccc
Confidence 34677777777777766652 112344567777777777754421 111 122344555556555554
No 159
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.75 E-value=0.00033 Score=76.25 Aligned_cols=137 Identities=23% Similarity=0.236 Sum_probs=88.1
Q ss_pred cchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCcc
Q 003192 87 DSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFLC 165 (840)
Q Consensus 87 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~ 165 (840)
..|..-..++++.+..... ++.|.|+-++||||+++.+....... .++++.-... +-.++ .+...
T Consensus 20 ~~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~~~------- 85 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDLLR------- 85 (398)
T ss_pred hhHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHHHH-------
Confidence 3455666777777665433 99999999999999997666654432 5565443322 11111 11111
Q ss_pred ccChhhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcchhh-----cccCccceEEccCC
Q 003192 166 EESESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLS-----REMDSEINFLVGIL 240 (840)
Q Consensus 166 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v~~-----~~~~~~~~~~l~~L 240 (840)
... .+...++..++||.|....+|+.....+.+.++. +|++|+-+..... ...+....+.+.||
T Consensus 86 ---------~~~-~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 86 ---------AYI-ELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred ---------HHH-HhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 111 1111257899999999999999877777776666 8888887765542 22345568899999
Q ss_pred CHHHHHHH
Q 003192 241 SQEESWSL 248 (840)
Q Consensus 241 ~~~~~~~l 248 (840)
+-.|-..+
T Consensus 155 SF~Efl~~ 162 (398)
T COG1373 155 SFREFLKL 162 (398)
T ss_pred CHHHHHhh
Confidence 98887654
No 160
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00083 Score=70.98 Aligned_cols=167 Identities=15% Similarity=0.076 Sum_probs=89.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCc-----c---ccChhhHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFL-----C---EESESGRARRL 176 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~---~~~~~~~~~~l 176 (840)
...+.++|+.|+||||+|+.+++..-.....+. ..+....-.+.+...-..+. . .....+.++.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l 94 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVREL 94 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHH
Confidence 457889999999999999999987754321100 00011111111110000000 0 00011223333
Q ss_pred HHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCcc-hhhcccCccceEEccCCCHHHHHHHH
Q 003192 177 YARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSRG-VLSREMDSEINFLVGILSQEESWSLF 249 (840)
Q Consensus 177 ~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf 249 (840)
.+.+. .+++-++|+|+++... ..+.+...+..-..++.+|+||.+.. +.......-..+.+.+++.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 33332 1344566789997642 33334333333334667777777653 33332333457899999999999988
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 250 QKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
.... . ....+.+..++..++|.|.....+
T Consensus 175 ~~~~--~-----~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 175 QQAL--P-----ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhc--c-----cCChHHHHHHHHHcCCCHHHHHHH
Confidence 7652 1 112344667889999999765444
No 161
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.75 E-value=0.00059 Score=74.00 Aligned_cols=173 Identities=16% Similarity=0.235 Sum_probs=95.2
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALS----N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+.++.|.+..++++.+.+. . ...+-|.++|++|+|||++|+.+++..... | +.+ ..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i--~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRV--VG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEE--eh----
Confidence 3346677777777766553 1 235679999999999999999999876533 2 222 11
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc------------C----ccccCCccC--CCCC
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL------------D----LETLGIPLG--DEHK 211 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~ 211 (840)
..+ .... .+. .......+++......+.+|++|+++... . +..+...+. ....
T Consensus 213 s~l----~~k~----~ge-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEF----VQKY----LGE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHH----HHHh----cch-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111 1111 011 11223344444445678999999986421 0 011111111 1223
Q ss_pred CcEEEEeeCCcchhhcc-c---CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 212 GCKVLLTSRSRGVLSRE-M---DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+..||.||...+..... . .-...+.++..+.++..++|+.+........+.+ ..++++.+.|.-
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 56778887765443221 1 2234688888899888888886632222111122 446667776654
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.75 E-value=0.0002 Score=86.09 Aligned_cols=158 Identities=14% Similarity=0.191 Sum_probs=90.6
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCC----CcEEE-EEeCCCccHHHHHH
Q 003192 80 SKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLF----DEVVF-VDVPQIPDIKKMQG 154 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F----~~~~w-v~vs~~~~~~~~~~ 154 (840)
+....+++||++++.+++..|......-+.++|++|+|||++|+.++......... +..+| ++++ .+.
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~- 241 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI- 241 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh-
Confidence 44566799999999999999987666677799999999999999999886433111 22333 2221 111
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHc-CCcEEEEEcccccccC---------ccccCCccCCCCCCc-EEEE-eeCCc
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKE-EKKILVILDDIWARLD---------LETLGIPLGDEHKGC-KVLL-TSRSR 222 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~---------~~~l~~~l~~~~~gs-~ili-TtR~~ 222 (840)
. +....+ .-...+..+++.+.+ +++.+|++|+++.... ...+..+. ..+|. ++|- ||.++
T Consensus 242 ---a--~~~~~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~--l~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 242 ---A--GAKYRG-EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA--LARGELHCIGATTLDE 313 (852)
T ss_pred ---h--cchhhh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh--hhcCceEEEEeCcHHH
Confidence 0 001111 111234445555432 4689999999975421 11122222 12332 3443 44432
Q ss_pred c---hh--hcccCccceEEccCCCHHHHHHHHHHH
Q 003192 223 G---VL--SREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 223 ~---v~--~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
. +. .........+.++..+.++..+++...
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 1 10 001122346788888999999988755
No 163
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.0022 Score=67.83 Aligned_cols=198 Identities=13% Similarity=0.142 Sum_probs=116.9
Q ss_pred cCCcccccchHHHHHHHHHHhC----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 80 SKGYQAFDSRISTFKDITNALS----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
...+....||+.+++.+.+++. .....-+-|.|-+|.|||.+...++.+......=-++++++...-.....++..
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 3456668999999999998875 345678899999999999999999988764321124577766655667778888
Q ss_pred HHHHhCCCc-cccChhhHHHHHHHHHHcCC-cEEEEEcccccccC--ccccCCccCC-CCCCcEEEEeeCCcc------h
Q 003192 156 IADELGLFL-CEESESGRARRLYARMKEEK-KILVILDDIWARLD--LETLGIPLGD-EHKGCKVLLTSRSRG------V 224 (840)
Q Consensus 156 i~~~l~~~~-~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs~iliTtR~~~------v 224 (840)
|...+.... ....+......+.....+.+ -+|+|+|..+.... -..+-..+.| .-+++|+|+.---.. .
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 877762211 11222333444555555444 68999999875421 1111111111 234565554211110 0
Q ss_pred hhc----ccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 225 LSR----EMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 225 ~~~----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+.. ..-........|.+.++-.+++.+++..... .......++.+++++.|.-
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t--~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST--SIFLNAAIELCARKVAAPS 362 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc--cccchHHHHHHHHHhccCc
Confidence 111 1122346778999999999999998643321 1222234455555554443
No 164
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.001 Score=73.63 Aligned_cols=193 Identities=17% Similarity=0.189 Sum_probs=109.3
Q ss_pred HHHHHHHhCCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-cEEEEEeCCCccHHHHHHHHHHHhCCCccccChh
Q 003192 93 FKDITNALSNPS-VDMIGICGMGGIGKTMLVKEIARQVKGHKLFD-EVVFVDVPQIPDIKKMQGQIADELGLFLCEESES 170 (840)
Q Consensus 93 ~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 170 (840)
.....++..+++ ..-+.|+|.+|+|||+||+.+++..... +.+ .++|++. .++..++...+...
T Consensus 117 ~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~------- 182 (440)
T PRK14088 117 YHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG------- 182 (440)
T ss_pred HHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc-------
Confidence 344444443332 3469999999999999999999987643 222 4566643 45556665555321
Q ss_pred hHHHHHHHHHHcCCcEEEEEccccccc---Cc-cccCCccCC-CCCCcEEEEeeC-Ccchhh-------cccCccceEEc
Q 003192 171 GRARRLYARMKEEKKILVILDDIWARL---DL-ETLGIPLGD-EHKGCKVLLTSR-SRGVLS-------REMDSEINFLV 237 (840)
Q Consensus 171 ~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iliTtR-~~~v~~-------~~~~~~~~~~l 237 (840)
....+.+.+. .+.-+|++||+.... .+ +.+...+.. ...|..||+||. ...-.. ........+.+
T Consensus 183 -~~~~f~~~~~-~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i 260 (440)
T PRK14088 183 -KLNEFREKYR-KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKL 260 (440)
T ss_pred -cHHHHHHHHH-hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEee
Confidence 1223333333 234589999997431 11 112111111 123456888875 322211 11233347889
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH------hcc--CHHHHHHHHHHh
Q 003192 238 GILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL------REE--NLFEWKNALLEL 304 (840)
Q Consensus 238 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l------~~~--~~~~w~~~l~~l 304 (840)
++.+.+.-.+++++.+...+. .-.+++...|++.+.|.--.+.-+-..+ .++ +...-++++..+
T Consensus 261 ~~pd~e~r~~IL~~~~~~~~~---~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 261 EPPDEETRKKIARKMLEIEHG---ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred CCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999888543222 2235678888888888655444332222 122 555666666654
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.71 E-value=0.00011 Score=85.87 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=90.5
Q ss_pred CcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccC-C---CCcEEEEEeCCCccHHHHHHHHH
Q 003192 82 GYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHK-L---FDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
...+++||++++.++++.|......-+.++|++|+|||++|+.+++...... . .++.+|.. +...+ +
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----l 254 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----L 254 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----h
Confidence 3456899999999999998865555667899999999999999998753221 1 13445421 11111 1
Q ss_pred HHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--------C--ccccCCccCCCCCCcEEEEeeCCcchh--
Q 003192 158 DELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--------D--LETLGIPLGDEHKGCKVLLTSRSRGVL-- 225 (840)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~--~~~l~~~l~~~~~gs~iliTtR~~~v~-- 225 (840)
. +....+ ........+.+.+.+.++.+|++|+++... + ...+..++...+ .-++|-+|...+..
T Consensus 255 a--G~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 255 A--GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNI 330 (758)
T ss_pred c--ccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHH
Confidence 0 111111 112234455555554567899999997431 1 111112222111 23344444333220
Q ss_pred ----hcccCccceEEccCCCHHHHHHHHHHH
Q 003192 226 ----SREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 226 ----~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
.........+.+++.+.+++.+++...
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 001122347899999999999998865
No 166
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.0017 Score=72.98 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=94.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
..+.|+|..|+|||.|++.+++.......-..++|++ ..++..++...+... ....+.+++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 4589999999999999999999876431112356664 344444444433211 1223334443 23
Q ss_pred EEEEEccccccc---Ccc-ccCCccCC-CCCCcEEEEeeCCcc--h---h---hcccCccceEEccCCCHHHHHHHHHHH
Q 003192 186 ILVILDDIWARL---DLE-TLGIPLGD-EHKGCKVLLTSRSRG--V---L---SREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 186 ~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iliTtR~~~--v---~---~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
=+|||||+.... .|+ .+...+.. ...|..|||||.... + . ...+....++++.+.+.+.-.+++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 588999996542 122 12111111 123556888887631 1 0 112344558899999999999999988
Q ss_pred HhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 253 VAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
+..... .-.++++.-|++.+.+..-.+.-
T Consensus 459 a~~r~l---~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 459 AVQEQL---NAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHhcCC---CCCHHHHHHHHHhccCCHHHHHH
Confidence 543322 22366788888887766544433
No 167
>PRK10536 hypothetical protein; Provisional
Probab=97.70 E-value=0.0003 Score=69.96 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=42.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEE
Q 003192 81 KGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVV 139 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~ 139 (840)
.+..++.+|......++.++.+. .+|.+.|++|+|||+||..++.+.-..+.|+.++
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 44556778888888899988764 5999999999999999999888543223355443
No 168
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.69 E-value=0.00032 Score=72.10 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=103.3
Q ss_pred ccccchHHHHHHHHHHhCCCC--c-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHh
Q 003192 84 QAFDSRISTFKDITNALSNPS--V-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADEL 160 (840)
Q Consensus 84 ~~~~gr~~~~~~l~~~l~~~~--~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 160 (840)
..|.+|+.++..+...+.+.. . ..|.|+|-+|.|||.+.+++++..... .+|+++-..++...+...|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 347789999999999887432 3 355899999999999999999987433 58999999999999999999998
Q ss_pred C-CCccccChh---hHHHHHHHHHH-------cCCcEEEEEcccccccCccccCCc----cC--CCCCCcEEEEeeCCcc
Q 003192 161 G-LFLCEESES---GRARRLYARMK-------EEKKILVILDDIWARLDLETLGIP----LG--DEHKGCKVLLTSRSRG 223 (840)
Q Consensus 161 ~-~~~~~~~~~---~~~~~l~~~l~-------~~k~~LlVlDdv~~~~~~~~l~~~----l~--~~~~gs~iliTtR~~~ 223 (840)
+ .+.++.... +........+. .++.++||||+++...+.++...+ +. -..+.. +|+++-...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecccc
Confidence 5 222222111 22222222221 246899999999877665542110 00 012223 344333321
Q ss_pred hh--hcccCccc--eEEccCCCHHHHHHHHHHH
Q 003192 224 VL--SREMDSEI--NFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 224 v~--~~~~~~~~--~~~l~~L~~~~~~~lf~~~ 252 (840)
-. ...++... ++..+.-+.++..+++.+.
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11 11134333 5567788899999988654
No 169
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.68 E-value=9.4e-05 Score=69.09 Aligned_cols=82 Identities=26% Similarity=0.392 Sum_probs=48.0
Q ss_pred hcCCCceeEEEecCCcCCCCchhhhc-ccCCcEEEecCcccCC---cccccCCCCCCEEeccCCCCCCCcH----HHhcc
Q 003192 483 FAGMIELRVLDLTKMHLLSLPSSLHL-LVNLRTLCLDQSVLGD---IAVIGELKQLEILSLSSSDIEHLPR----EIGRL 554 (840)
Q Consensus 483 ~~~l~~L~~L~l~~~~~~~lp~~i~~-L~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L 554 (840)
|..++.|..|.+++|.|+.+-+.+.. +++|..|.|.+|+|.. +..+..++.|++|.+-+|.++.-+. .+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 45566666666666666655444433 3456666666666544 3445566666666666666654332 14566
Q ss_pred CCCCEEecCC
Q 003192 555 SKLRLLDLTN 564 (840)
Q Consensus 555 ~~L~~L~l~~ 564 (840)
++|+.||...
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 7777777655
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0016 Score=68.17 Aligned_cols=186 Identities=16% Similarity=0.106 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCc-----EEEEEeCCCccHHHHHHHHHHHhCCC
Q 003192 90 ISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDE-----VVFVDVPQIPDIKKMQGQIADELGLF 163 (840)
Q Consensus 90 ~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-----~~wv~vs~~~~~~~~~~~i~~~l~~~ 163 (840)
....+.+...+..+.+ ..+.+.|+.|+||+++|..+++..-......+ +-|+..+.-+|+..+...- +.-+..
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p-~~~~~k 88 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIP-NRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCC-Cccccc
Confidence 3445677777766655 47899999999999999999887643321110 0011001111110000000 000000
Q ss_pred ccccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc-chhhcccCccceEE
Q 003192 164 LCEESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVLSREMDSEINFL 236 (840)
Q Consensus 164 ~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~~~~~~~~~~~~ 236 (840)
.......+.+..+.+.+. .+++-++|+|+++... .-.++...+..-..++.+|++|.+. .+.......-..+.
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~ 168 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLE 168 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEee
Confidence 000011222333333332 2556799999997652 2233333333333466666666654 44333333445788
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 237 VGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 237 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
+.+++.+++.+.+... + .....++.++..++|.|+....+
T Consensus 169 ~~~~~~~~~~~~L~~~--~-------~~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 169 FKLPPAHEALAWLLAQ--G-------VSERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CCCcCHHHHHHHHHHc--C-------CChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999998888653 1 11233677899999999866544
No 171
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=1.1e-05 Score=79.25 Aligned_cols=207 Identities=21% Similarity=0.244 Sum_probs=116.1
Q ss_pred ceeEEEecCCcCCCCc--hhhh-cccCCcEEEecCcccCCccc----ccCCCCCCEEeccCCCCC----CCcHHHhccCC
Q 003192 488 ELRVLDLTKMHLLSLP--SSLH-LLVNLRTLCLDQSVLGDIAV----IGELKQLEILSLSSSDIE----HLPREIGRLSK 556 (840)
Q Consensus 488 ~L~~L~l~~~~~~~lp--~~i~-~L~~L~~L~L~~~~l~~~~~----i~~L~~L~~L~L~~~~l~----~lp~~i~~L~~ 556 (840)
.+..|-+.++.|...- ..|+ ..++++.|||.+|.|+..+. +.+|++|++|+|+.|.+. .+| ..+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 4456666677766432 2343 45789999999999888433 457899999999998765 444 35678
Q ss_pred CCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCC
Q 003192 557 LRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYE 636 (840)
Q Consensus 557 L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 636 (840)
|+.|-|.+. .+.-- ..-..+..++.++.|+++.|+...+-..
T Consensus 123 l~~lVLNgT-~L~w~-------------~~~s~l~~lP~vtelHmS~N~~rq~n~D------------------------ 164 (418)
T KOG2982|consen 123 LRVLVLNGT-GLSWT-------------QSTSSLDDLPKVTELHMSDNSLRQLNLD------------------------ 164 (418)
T ss_pred eEEEEEcCC-CCChh-------------hhhhhhhcchhhhhhhhccchhhhhccc------------------------
Confidence 888888773 22100 0112256677788888876654332211
Q ss_pred CccEEEEeecCcccchhh--HHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCC
Q 003192 637 TSRTLKLMLNTRTCLENG--TIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAF 714 (840)
Q Consensus 637 ~l~~l~L~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 714 (840)
.++.....+. .....+++..++..-|+. ..-||++..+-+..|+. +... .......|
T Consensus 165 --------d~c~e~~s~~v~tlh~~~c~~~~w~~~~~l---------~r~Fpnv~sv~v~e~Pl-K~~s---~ek~se~~ 223 (418)
T KOG2982|consen 165 --------DNCIEDWSTEVLTLHQLPCLEQLWLNKNKL---------SRIFPNVNSVFVCEGPL-KTES---SEKGSEPF 223 (418)
T ss_pred --------cccccccchhhhhhhcCCcHHHHHHHHHhH---------HhhcccchheeeecCcc-cchh---hcccCCCC
Confidence 1111110000 001122222222222211 13479999999988762 2221 11234556
Q ss_pred CccceeccccccccccccccccCcccCCCCCEEEEecCCCCccc
Q 003192 715 PLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSI 758 (840)
Q Consensus 715 ~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l 758 (840)
|.+--|.+.. +++.+|. .......||.|..|.+.+.|-...+
T Consensus 224 p~~~~LnL~~-~~idswa-svD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 224 PSLSCLNLGA-NNIDSWA-SVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred Ccchhhhhcc-cccccHH-HHHHHcCCchhheeeccCCcccccc
Confidence 7776777765 4555542 1234567888998988887644433
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=0.00026 Score=80.55 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=45.0
Q ss_pred ccccCCcccccchHHHHHHHHHHhCC-----CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 77 LTLSKGYQAFDSRISTFKDITNALSN-----PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 77 ~~~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...|....+++|.++.++++..++.. ...+++.|+|++|+||||+++.++....
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34677788899999999999998863 2346799999999999999999998664
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.62 E-value=0.0002 Score=66.06 Aligned_cols=90 Identities=29% Similarity=0.257 Sum_probs=51.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
..+.|+|++|+||||+|+.++....... ..+++++.+........... .....................+.....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999998876542 24566655443322222111 11111111111222234444455543334
Q ss_pred EEEEEcccccccC
Q 003192 186 ILVILDDIWARLD 198 (840)
Q Consensus 186 ~LlVlDdv~~~~~ 198 (840)
.++++|+++....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 8999999987643
No 174
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=1.2e-05 Score=69.86 Aligned_cols=89 Identities=22% Similarity=0.298 Sum_probs=60.0
Q ss_pred hcCCCceeEEEecCCcCCCCchhhhcc-cCCcEEEecCcccCC-cccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEE
Q 003192 483 FAGMIELRVLDLTKMHLLSLPSSLHLL-VNLRTLCLDQSVLGD-IAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLL 560 (840)
Q Consensus 483 ~~~l~~L~~L~l~~~~~~~lp~~i~~L-~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 560 (840)
+.+..+|...+|++|.+..+|+.|... +.++.|++++|.+++ |..+..++.|+.|+++.|.+...|..+..|.+|-.|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 445667777778888877777766544 367777777777766 445777777777777777777777767667777777
Q ss_pred ecCCCCCCcccc
Q 003192 561 DLTNCSKLKSIP 572 (840)
Q Consensus 561 ~l~~c~~l~~lp 572 (840)
+..+ +....+|
T Consensus 129 ds~~-na~~eid 139 (177)
T KOG4579|consen 129 DSPE-NARAEID 139 (177)
T ss_pred cCCC-CccccCc
Confidence 6665 3344444
No 175
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=8.2e-05 Score=69.47 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=72.6
Q ss_pred ccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch--hhhcccCCcEEEe
Q 003192 440 KFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS--SLHLLVNLRTLCL 517 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~L~~L~~L~L 517 (840)
.....+++++|++..++....+++|.+|.+..|.+. .+.+.+-..+++|..|.|.+|++.++-+ .+..++.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 456677888887776666567788888888877774 4444444556778888888888776533 5667778888888
Q ss_pred cCcccCC-----cccccCCCCCCEEeccCC
Q 003192 518 DQSVLGD-----IAVIGELKQLEILSLSSS 542 (840)
Q Consensus 518 ~~~~l~~-----~~~i~~L~~L~~L~L~~~ 542 (840)
-+|+++. .-.+.++++|++||...-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8887665 245778888888887764
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0011 Score=70.51 Aligned_cols=161 Identities=13% Similarity=0.050 Sum_probs=87.6
Q ss_pred cccc-hHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCC
Q 003192 85 AFDS-RISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 85 ~~~g-r~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 162 (840)
.++| .+..++.+...+..+.+ ...-++|+.|+||||+|+.+++..-........ .+......+.+...-..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCC
Confidence 3455 77778888888876654 467999999999999999998876432211100 00000111111000000
Q ss_pred Cc-----c-ccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc-chhhccc
Q 003192 163 FL-----C-EESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVLSREM 229 (840)
Q Consensus 163 ~~-----~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~~~~~ 229 (840)
+. . .....+.+..+.+.+. .+.+-++|+|+++... ..+.+...+..-..++.+|++|.+. .+.....
T Consensus 79 D~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred CEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 00 0 0001122233333322 2445689999986542 2334444444444567777777654 3333223
Q ss_pred CccceEEccCCCHHHHHHHHHHH
Q 003192 230 DSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 230 ~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
.....+++.+++.++..+.+...
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 44457999999999988877653
No 177
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.58 E-value=0.0024 Score=62.76 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=40.2
Q ss_pred CCcccccchHHHHHHHHHHh----CCCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 81 KGYQAFDSRISTFKDITNAL----SNPSVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
.....++|-+...+.+++-- ......-|-+||..|+|||++++.+.+.+..+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 44556788887777776643 34455678889999999999999999988765
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.57 E-value=0.00015 Score=66.13 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=41.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCC-cE
Q 003192 108 IGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEK-KI 186 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-~~ 186 (840)
|.|+|++|+||||+|+.+++..... .+.++.+...+. ........+..+.+...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----cccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999997532 344443322100 00111123333444443333 79
Q ss_pred EEEEcccccc
Q 003192 187 LVILDDIWAR 196 (840)
Q Consensus 187 LlVlDdv~~~ 196 (840)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999754
No 179
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.54 E-value=0.0017 Score=73.66 Aligned_cols=181 Identities=15% Similarity=0.229 Sum_probs=95.2
Q ss_pred CCcccccchHHHHHHHHHHhC---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 81 KGYQAFDSRISTFKDITNALS---N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
..+.++.|.++.++++.+++. . ...+-+.++|++|+|||++|+.+++..... ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH---
Confidence 345567787766555544332 1 123468899999999999999999876432 232221
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc----C--------c----cccCCccC--CCC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL----D--------L----ETLGIPLG--DEH 210 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----~--------~----~~l~~~l~--~~~ 210 (840)
.++.... .+ . .......+++......+.+|++||++... . + ..+...+. ...
T Consensus 122 -~~~~~~~---~g-----~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFVEMF---VG-----V-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHHHH---hc-----c-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111100 00 0 11233444444444567899999996431 0 0 01111111 122
Q ss_pred CCcEEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHHH
Q 003192 211 KGCKVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGL-PIAIVTI 285 (840)
Q Consensus 211 ~gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~ 285 (840)
.+..||.||.......... .-...+.++..+.++-.++|+.++...... .......+++.+.|. +-.|..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~----~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA----PDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC----cchhHHHHHHhCCCCCHHHHHHH
Confidence 3445565665543221111 223468888889888888888774322111 112245788888774 3334433
No 180
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.0042 Score=60.85 Aligned_cols=182 Identities=17% Similarity=0.186 Sum_probs=103.3
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeC-CCccHHHHHHHHHHHhCCCcccc--ChhhHH-HHHH
Q 003192 102 NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVP-QIPDIKKMQGQIADELGLFLCEE--SESGRA-RRLY 177 (840)
Q Consensus 102 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~-~~l~ 177 (840)
.++..++.++|.-|.|||++++.+....... .++=|.+. +......+...|+..+..+.... .....+ ..+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 4456799999999999999999555444322 12223333 34567778888888776632111 111222 2333
Q ss_pred HHHHcCCc-EEEEEcccccc--cCccccCCcc--C-CCCCCcEEEEeeC--------CcchhhcccCccceEEccCCCHH
Q 003192 178 ARMKEEKK-ILVILDDIWAR--LDLETLGIPL--G-DEHKGCKVLLTSR--------SRGVLSREMDSEINFLVGILSQE 243 (840)
Q Consensus 178 ~~l~~~k~-~LlVlDdv~~~--~~~~~l~~~l--~-~~~~gs~iliTtR--------~~~v~~~~~~~~~~~~l~~L~~~ 243 (840)
+...++++ ..+++||..+. ..++.++... . +...--+|+..-. ..............|++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 33445777 99999998754 2223221111 1 1111112333211 11110100111223899999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 003192 244 ESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAK 287 (840)
Q Consensus 244 ~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 287 (840)
+...++..++-.+....+--..+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988864432222233456778899999999999988763
No 181
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.0016 Score=71.84 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=88.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
.-+.|+|+.|+|||+||+.+++..... -..+++++ .+.+...+...+... ....+.+.+. +.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~--~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYR--NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcc--cC
Confidence 568899999999999999999987643 23356654 334444555544321 1222333332 34
Q ss_pred EEEEEcccccccC--c--cccCCccCC-CCCCcEEEEeeCCc-chh-------hcccCccceEEccCCCHHHHHHHHHHH
Q 003192 186 ILVILDDIWARLD--L--ETLGIPLGD-EHKGCKVLLTSRSR-GVL-------SREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 186 ~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~iliTtR~~-~v~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
-+|++||+..... + +.+...+.. ...|..||+||... ... .........+.+.+++.++-.++++++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5889999865421 1 112111110 12355688887542 111 111233357899999999999999888
Q ss_pred HhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 253 VAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+...+. .-.+++..-|++.+.|.-
T Consensus 284 ~~~~~~---~l~~evl~~la~~~~~di 307 (445)
T PRK12422 284 AEALSI---RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHcCC---CCCHHHHHHHHHhcCCCH
Confidence 543321 223556666777776543
No 182
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.50 E-value=0.00012 Score=71.23 Aligned_cols=256 Identities=17% Similarity=0.116 Sum_probs=144.6
Q ss_pred hcCCCceeEEEecCCcCC-----CCchhhhcccCCcEEEecCcccCC------------cccccCCCCCCEEeccCCCCC
Q 003192 483 FAGMIELRVLDLTKMHLL-----SLPSSLHLLVNLRTLCLDQSVLGD------------IAVIGELKQLEILSLSSSDIE 545 (840)
Q Consensus 483 ~~~l~~L~~L~l~~~~~~-----~lp~~i~~L~~L~~L~L~~~~l~~------------~~~i~~L~~L~~L~L~~~~l~ 545 (840)
+..+..+..++||||.|. .+...|.+-.+|+..+++.-.... .+.+-++++|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345777888888888775 344566677788888877543211 255778999999999999776
Q ss_pred -CCcHH----HhccCCCCEEecCCCCCCccccc-cccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCc
Q 003192 546 -HLPRE----IGRLSKLRLLDLTNCSKLKSIPP-NVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLE 619 (840)
Q Consensus 546 -~lp~~----i~~L~~L~~L~l~~c~~l~~lp~-~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 619 (840)
+.|+. +++-+.|.||.+++| .++.+.. .|++- + .--........-+.|++..+..|.+...|.......|
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigka-l-~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l- 181 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKA-L-FHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL- 181 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHH-H-HHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH-
Confidence 44443 567789999999985 4443321 11100 0 0000011234557788888888887776654311101
Q ss_pred EEEEEEcCcCCcCCCCCCccEEEEeecCcccc-----hhhHHHhhcccceeeecccccchh----hcccccccccCCCcE
Q 003192 620 RYKILIGDEWDWHGKYETSRTLKLMLNTRTCL-----ENGTIMQLKGIEDLYLGELQDVKN----VLNELDAEGFLQLKH 690 (840)
Q Consensus 620 ~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~l~~L~~ 690 (840)
.....++.+++..|+...- ...-..-+++|+.|+|..|..... +...+ ...+.|+.
T Consensus 182 -------------~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al--~~W~~lrE 246 (388)
T COG5238 182 -------------ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL--CEWNLLRE 246 (388)
T ss_pred -------------HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh--cccchhhh
Confidence 0112334444444433221 111122367888888887653321 11112 44577899
Q ss_pred EEeecCCCcceeecC-CCCccCCCCCccceeccccccccccc----cccccCcccCCCCCEEEEecCCCCccc
Q 003192 691 LHVQNSPYILCIVDS-VEGVACDAFPLLESLFLHNLTNLEKI----CNGRLTAASFCNLGIIKVGNCNKLKSI 758 (840)
Q Consensus 691 L~l~~~~~l~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~i----~~~~~~~~~l~~L~~L~l~~C~~L~~l 758 (840)
|.+.+|-.-..-..+ ...+....+|+|..|...+...-..+ ....+..+.+|-|..|.+.+ ++++..
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~ 318 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKEL 318 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhH
Confidence 999887522111000 01223456788988888775432222 11234456788898888887 566654
No 183
>PRK08118 topology modulation protein; Reviewed
Probab=97.49 E-value=7.6e-05 Score=70.79 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCcEEE
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGH-KLFDEVVF 140 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 140 (840)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987654 45777776
No 184
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0046 Score=63.37 Aligned_cols=198 Identities=19% Similarity=0.250 Sum_probs=111.4
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALS----N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
|..+-|-++.+++|.+... + +..+-|-++|++|.|||-||++|+++.... |+.|...
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS--- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS--- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH---
Confidence 4556678888888888765 1 245778999999999999999999987655 3433322
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc------------C----ccccCCccCCC--CC
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL------------D----LETLGIPLGDE--HK 211 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~--~~ 211 (840)
+-+++- +| ........+++-..++.+.+|++|.++... + +-++...+..+ ..
T Consensus 220 ElVqKY----iG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ELVQKY----IG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred HHHHHH----hc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 111111 11 112345555555566789999999986321 0 11121222222 23
Q ss_pred CcEEEEeeCCcchhh----cccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh----HHHH
Q 003192 212 GCKVLLTSRSRGVLS----REMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP----IAIV 283 (840)
Q Consensus 212 gs~iliTtR~~~v~~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P----lai~ 283 (840)
.-|||..|-..+++. +...-...++++.=+.+.-.++|+-+...-....+-+ .+.+++.|.|.- .|+-
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHH
Confidence 457887666655542 1122334677775555555667766632222222233 345666666654 4555
Q ss_pred HHHHHHh---cc---CHHHHHHHHHHh
Q 003192 284 TIAKALR---EE---NLFEWKNALLEL 304 (840)
Q Consensus 284 ~~~~~l~---~~---~~~~w~~~l~~l 304 (840)
+=|+++. .+ +.+.+..+.++.
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 6666665 12 344455555543
No 185
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.48 E-value=0.00026 Score=67.39 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=76.0
Q ss_pred cccccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 76 WLTLSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 76 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.-..|....+++|.++.++++--+..+++.+-+.|.||+|+||||=+..+++..-....=+.+.-.+.|.+..+.-+...
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~ 98 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNK 98 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHH
Confidence 33456667779999999998888877888999999999999999999999998766544466777788877665555444
Q ss_pred HHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 156 IADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
|-.-..... .+-.++.-++|||.+++.
T Consensus 99 IK~FAQ~kv--------------~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 99 IKMFAQKKV--------------TLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHHHHHhhc--------------cCCCCceeEEEeeccchh
Confidence 422111110 011255678899998765
No 186
>CHL00176 ftsH cell division protein; Validated
Probab=97.48 E-value=0.0018 Score=74.48 Aligned_cols=170 Identities=19% Similarity=0.285 Sum_probs=92.1
Q ss_pred ccccchHHHHHH---HHHHhCCC---------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHH
Q 003192 84 QAFDSRISTFKD---ITNALSNP---------SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKK 151 (840)
Q Consensus 84 ~~~~gr~~~~~~---l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 151 (840)
.++.|.++..++ +++.+..+ ..+-|.++|++|+|||++|+.+++..... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----H
Confidence 445566554444 44444322 13468999999999999999999876432 3333211 1
Q ss_pred HHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc------------C----ccccCCccCC--CCCCc
Q 003192 152 MQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL------------D----LETLGIPLGD--EHKGC 213 (840)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~gs 213 (840)
+.... .+ . .......+++......+++|++||++... . +..+...+.. ...+.
T Consensus 252 f~~~~---~g-----~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEMF---VG-----V-GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHh---hh-----h-hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11000 00 0 11233444555555678999999996431 0 1111111111 23455
Q ss_pred EEEEeeCCcchhhcc-c---CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCC
Q 003192 214 KVLLTSRSRGVLSRE-M---DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAG 277 (840)
Q Consensus 214 ~iliTtR~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G 277 (840)
.||.||...+..... . .-...+.++..+.++-.++++.++.... .........+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~----~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK----LSPDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc----cchhHHHHHHHhcCCC
Confidence 566666654433211 1 1234678888899998899987743211 1122345678888877
No 187
>PRK08116 hypothetical protein; Validated
Probab=97.46 E-value=0.00093 Score=68.65 Aligned_cols=102 Identities=21% Similarity=0.207 Sum_probs=59.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
..+.++|.+|+|||.||..+++....+ -..+++++ ..+++..+........ ......+.+.+.+ -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~--~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN--A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC--C
Confidence 468899999999999999999998654 23456664 4445555555443211 1112234455542 2
Q ss_pred EEEEEccccc--ccCccc--cCCccCC-CCCCcEEEEeeCCc
Q 003192 186 ILVILDDIWA--RLDLET--LGIPLGD-EHKGCKVLLTSRSR 222 (840)
Q Consensus 186 ~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~iliTtR~~ 222 (840)
=||||||+.. ..+|.. +...+.. ...|..+||||...
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3899999943 233422 2211211 12455688888753
No 188
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.42 E-value=0.0012 Score=69.40 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=67.4
Q ss_pred HHHHHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCc-EEEEEeCCC-ccHHHHHHHHHHHhCCCccccCh
Q 003192 93 FKDITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDE-VVFVDVPQI-PDIKKMQGQIADELGLFLCEESE 169 (840)
Q Consensus 93 ~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~ 169 (840)
..++++.+.. +....+.|+|.+|+|||||++.+++....+ +-+. ++|+.+.+. .++.++.+.+...+.........
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 4457777662 334577999999999999999999987654 2344 467667654 47888888888766654322221
Q ss_pred hh------HHHHHHHHH-HcCCcEEEEEccccc
Q 003192 170 SG------RARRLYARM-KEEKKILVILDDIWA 195 (840)
Q Consensus 170 ~~------~~~~l~~~l-~~~k~~LlVlDdv~~ 195 (840)
.. .+....+++ .++++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 122233333 358999999999854
No 189
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0091 Score=62.47 Aligned_cols=176 Identities=12% Similarity=0.094 Sum_probs=96.4
Q ss_pred HHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCc-----
Q 003192 91 STFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFL----- 164 (840)
Q Consensus 91 ~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----- 164 (840)
...+++.+.+..+.+ ..+-+.|+.|+||+++|..++...-....-+ .........+.+...-..+.
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--------EACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--------CCCCCCHHHHHHHcCCCCCEEEEec
Confidence 345667777665554 4889999999999999999988654321100 00000111111111000000
Q ss_pred c---ccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCC-cchhhcccCccce
Q 003192 165 C---EESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRS-RGVLSREMDSEIN 234 (840)
Q Consensus 165 ~---~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~-~~v~~~~~~~~~~ 234 (840)
. ..-..+.++.+.+.+. .+++-++|+|+++... ...++...+..-..++.+|++|.+ ..+.......-..
T Consensus 82 ~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 82 EKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred CcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 0 0001122233333332 2455688999987652 334443334333445666666555 4454443444557
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 235 FLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 235 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
+.+.+++.+++.+.+... +. . .+..+++.++|.|+....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~--~~-----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQ--GI-----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EeCCCCCHHHHHHHHHHc--CC-----c----hHHHHHHHcCCCHHHHHHH
Confidence 899999999999888654 11 1 2356789999999876544
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.40 E-value=0.0019 Score=60.90 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHhCCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCC------------------CcEEEEEeCCC--
Q 003192 88 SRISTFKDITNALSNPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKLF------------------DEVVFVDVPQI-- 146 (840)
Q Consensus 88 gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------------------~~~~wv~vs~~-- 146 (840)
|.++..+.+.+.+..+..+ .+.++|+.|+||+++|..+++..-..... .-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5667778888888766654 78999999999999999998876433222 22344433222
Q ss_pred -ccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCCcc
Q 003192 147 -PDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRSRG 223 (840)
Q Consensus 147 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~~~ 223 (840)
..++++. ++.+.+..... .+++-++|+||++.. ....++...+..-..++++|++|.+..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2333332 44443332211 145678999999865 334455444444456788888888765
Q ss_pred h-hhcccCccceEEccCC
Q 003192 224 V-LSREMDSEINFLVGIL 240 (840)
Q Consensus 224 v-~~~~~~~~~~~~l~~L 240 (840)
- .......-..+.+.++
T Consensus 144 ~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GS-HHHHTTSEEEEE---
T ss_pred HChHHHHhhceEEecCCC
Confidence 3 3322233345666554
No 191
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.0043 Score=66.34 Aligned_cols=137 Identities=15% Similarity=0.197 Sum_probs=82.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
....+.|||..|.|||.|++.+.+.......=..++++ +.+.+...++..+.. +.+..+.+.. +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~------~se~f~~~~v~a~~~--------~~~~~Fk~~y-~- 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL------TSEDFTNDFVKALRD--------NEMEKFKEKY-S- 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec------cHHHHHHHHHHHHHh--------hhHHHHHHhh-c-
Confidence 36789999999999999999999988765211234443 334444444443321 2334444444 2
Q ss_pred CcEEEEEccccccc---Ccc-ccCCccCC-CCCCcEEEEeeCCcchh--------hcccCccceEEccCCCHHHHHHHHH
Q 003192 184 KKILVILDDIWARL---DLE-TLGIPLGD-EHKGCKVLLTSRSRGVL--------SREMDSEINFLVGILSQEESWSLFQ 250 (840)
Q Consensus 184 k~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iliTtR~~~v~--------~~~~~~~~~~~l~~L~~~~~~~lf~ 250 (840)
-=++++||++-.. .|+ ++...+.. ...|.+||+|++...-. .......-.+++.+.+.+....++.
T Consensus 176 -~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 176 -LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred -cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 2388899997532 222 12111111 22344899998654221 1113344689999999999999998
Q ss_pred HHHhcCC
Q 003192 251 KMVAEGD 257 (840)
Q Consensus 251 ~~~~~~~ 257 (840)
+++...+
T Consensus 255 kka~~~~ 261 (408)
T COG0593 255 KKAEDRG 261 (408)
T ss_pred HHHHhcC
Confidence 8754433
No 192
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0066 Score=63.68 Aligned_cols=176 Identities=12% Similarity=0.079 Sum_probs=98.1
Q ss_pred HHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCc------
Q 003192 92 TFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFL------ 164 (840)
Q Consensus 92 ~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------ 164 (840)
..+.+...+..+.+ ..+-+.|+.|+||+++|+.++...-...... ...+......+.+...-..+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 34667777766554 5888999999999999999998764332111 001111111111111100000
Q ss_pred -cccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc-chhhcccCccceEE
Q 003192 165 -CEESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVLSREMDSEINFL 236 (840)
Q Consensus 165 -~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~~~~~~~~~~~~ 236 (840)
...-..+.++.+.+.+. .+++-++|+|+++... ...++...+..-..++.+|++|.+. .+.......-..+.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 00011223334444433 2566788899997653 2333433343334566677676664 44333233345789
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 237 VGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 237 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
+.+++.++..+.+.... +. ....+...++.++|.|...
T Consensus 163 ~~~~~~~~~~~~L~~~~--~~------~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 163 IHPPEEQQALDWLQAQS--SA------EISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCCHHHHHHHHHHHh--cc------ChHHHHHHHHHcCCCHHHH
Confidence 99999999998887652 11 1123567788899999643
No 193
>PRK08181 transposase; Validated
Probab=97.33 E-value=0.0016 Score=66.54 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=59.1
Q ss_pred HHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHH
Q 003192 98 NALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLY 177 (840)
Q Consensus 98 ~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 177 (840)
+|+.. ..-+.++|++|+|||.||..+.+....+ ...++|+++ .++...+..... . .......
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~----~~~~~~l 162 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----E----LQLESAI 162 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----C----CcHHHHH
Confidence 46543 3569999999999999999999877544 234566643 445555543221 0 1122344
Q ss_pred HHHHcCCcEEEEEcccccc--cCc--cccCCccCCCCCCcEEEEeeCCc
Q 003192 178 ARMKEEKKILVILDDIWAR--LDL--ETLGIPLGDEHKGCKVLLTSRSR 222 (840)
Q Consensus 178 ~~l~~~k~~LlVlDdv~~~--~~~--~~l~~~l~~~~~gs~iliTtR~~ 222 (840)
+.+. +.=|||+||+... .++ ..+...+.....+..+||||...
T Consensus 163 ~~l~--~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 AKLD--KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHh--cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4444 3459999999533 111 11222222111123488888754
No 194
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0021 Score=70.85 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=115.7
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
+|....+++|.+.....|...+..+.. ......|+-|+||||+|+.++........ .....+......+.|.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhh
Confidence 466677889999999999999886543 46778899999999999999987653321 1122233333333443
Q ss_pred HHhCCC-----ccccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCC-cchh
Q 003192 158 DELGLF-----LCEESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRS-RGVL 225 (840)
Q Consensus 158 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~-~~v~ 225 (840)
..-..+ .-.....+.++.+.+... .++.-+.|+|+|+-. ..|.++..-+..--...+.|+.|.+ ..+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 321000 001122334555555554 356668999999754 4555554444333344555555554 4444
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
.........|.++.++.++-...+...+...+ ....++...-|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~---I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEG---INIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcC---CccCHHHHHHHHHHcCCCh
Confidence 33344556899999999988888877643332 2233455666777777644
No 195
>PRK07261 topology modulation protein; Provisional
Probab=97.29 E-value=0.0011 Score=63.31 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCcEEE
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGH-KLFDEVVF 140 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 140 (840)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998775432 13455666
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0077 Score=63.91 Aligned_cols=177 Identities=13% Similarity=0.096 Sum_probs=97.9
Q ss_pred HHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCC---c-----EEEEEeCCCccHHHHHHHHHHHhC
Q 003192 91 STFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFD---E-----VVFVDVPQIPDIKKMQGQIADELG 161 (840)
Q Consensus 91 ~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~-----~~wv~vs~~~~~~~~~~~i~~~l~ 161 (840)
..-+++...+.++.+ ..+-+.|+.|+||+++|..++...-....-+ | +.++.....+|+..+..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------- 81 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP------- 81 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-------
Confidence 345667777776544 5888999999999999999988764321110 0 00111111111110000
Q ss_pred CCcc-ccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc-chhhcccCccc
Q 003192 162 LFLC-EESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVLSREMDSEI 233 (840)
Q Consensus 162 ~~~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~~~~~~~~~ 233 (840)
... ..-..+.++.+.+.+. .+++-++|+|+++... .-..+...+..-..++.+|++|.+. .+.......-.
T Consensus 82 -~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 82 -EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred -ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 000 0011223334444433 3567799999987652 2333433333334566666666654 44433233345
Q ss_pred eEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 003192 234 NFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIV 283 (840)
Q Consensus 234 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 283 (840)
.+.+.+++.+++.+.+.... + ...+.+..++..++|.|....
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~--~------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREV--T------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccCCCCCHHHHHHHHHHcc--C------CCHHHHHHHHHHcCCCHHHHH
Confidence 78999999999988776541 1 113346788999999996443
No 197
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.22 E-value=0.0034 Score=69.76 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=81.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEK 184 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 184 (840)
.+-|-++|++|+|||.+|+.+++..... | +-++.+. +. ....+++ ......+++......
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l~--------~~~vGes-e~~l~~~f~~A~~~~ 318 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------LF--------GGIVGES-ESRMRQMIRIAEALS 318 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------hc--------ccccChH-HHHHHHHHHHHHhcC
Confidence 4678999999999999999999987543 2 2222211 11 0111111 123344444444457
Q ss_pred cEEEEEcccccccC----c----------cccCCccCCCCCCcEEEEeeCCcchhhccc----CccceEEccCCCHHHHH
Q 003192 185 KILVILDDIWARLD----L----------ETLGIPLGDEHKGCKVLLTSRSRGVLSREM----DSEINFLVGILSQEESW 246 (840)
Q Consensus 185 ~~LlVlDdv~~~~~----~----------~~l~~~l~~~~~gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~ 246 (840)
+++|++|+++.... . ..+...+.....+.-||.||.+.......+ .-...+.++.-+.++-.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 89999999974310 0 001111111223334555666554322111 22346788888889999
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 247 SLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 247 ~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
++|+.++......... ......+++.+.|.-
T Consensus 399 ~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 399 KIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 9998775332111100 122456667776654
No 198
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0046 Score=69.12 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=92.5
Q ss_pred ccchHHHHHHHHHHhC------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHH
Q 003192 86 FDSRISTFKDITNALS------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADE 159 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 159 (840)
-+|-++..++|++.|. .-+.+++++||++|||||+|++.+++....+ | +-++++.-.|..++-.-
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGH---- 395 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGH---- 395 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccc----
Confidence 4678888999999885 2345799999999999999999999987654 3 34566666665554211
Q ss_pred hCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc-Cc-----cccCCccCC-------------CCCCcEEE-Eee
Q 003192 160 LGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL-DL-----ETLGIPLGD-------------EHKGCKVL-LTS 219 (840)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-~~-----~~l~~~l~~-------------~~~gs~il-iTt 219 (840)
..+..+ ...+.+.+-..... .++-+++||.++... ++ .++...+.. .--=|.|+ |+|
T Consensus 396 -RRTYIG-amPGrIiQ~mkka~-~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 396 -RRTYIG-AMPGKIIQGMKKAG-VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred -cccccc-cCChHHHHHHHHhC-CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEee
Confidence 111111 22233322222222 467899999987541 00 111111111 01124444 444
Q ss_pred CCc-c-hhhcccCccceEEccCCCHHHHHHHHHHHH
Q 003192 220 RSR-G-VLSREMDSEINFLVGILSQEESWSLFQKMV 253 (840)
Q Consensus 220 R~~-~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 253 (840)
-+. + +.....+.-.++++.+.+++|-.++-++++
T Consensus 473 ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 473 ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 442 1 222234555689999999999888887764
No 199
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.17 E-value=0.0081 Score=61.81 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHH
Q 003192 91 STFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQ 153 (840)
Q Consensus 91 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 153 (840)
+..+++..++..+ .-|.+.|++|+|||++|+.+++.... ..++++.....+..++.
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHh
Confidence 3455666666544 45668999999999999999875421 24556666655555443
No 200
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.15 E-value=0.001 Score=65.98 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV 143 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 143 (840)
-.++|+|.+|.||||++..+....... |+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 467899999999999999998876654 877776644
No 201
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.14 E-value=9.2e-05 Score=84.40 Aligned_cols=119 Identities=20% Similarity=0.167 Sum_probs=59.9
Q ss_pred hcccceeeecccccchhh--cccccccccCCCcEEEeecC-CCcceeecCCCCccCCCCCccceeccccccccccccccc
Q 003192 659 LKGIEDLYLGELQDVKNV--LNELDAEGFLQLKHLHVQNS-PYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGR 735 (840)
Q Consensus 659 l~~L~~L~l~~~~~~~~~--~~~l~~~~l~~L~~L~l~~~-~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~ 735 (840)
.+.|+.|.+.+|...... .... ...++|+.|++.+| ...... ..........+++|+.|+++++..+++.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 466666666666555431 1222 45566777776653 211111 10011123345666666666665544331111
Q ss_pred cCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccc
Q 003192 736 LTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSM 781 (840)
Q Consensus 736 ~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 781 (840)
. ...+++|+.|.+.+|..+++..-......+++|++|++++|..+
T Consensus 264 l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 264 L-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred H-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1 11256677776666666554433344556666777777666665
No 202
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.008 Score=68.62 Aligned_cols=179 Identities=18% Similarity=0.207 Sum_probs=103.8
Q ss_pred cccccchH---HHHHHHHHHhCCC---------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHH
Q 003192 83 YQAFDSRI---STFKDITNALSNP---------SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIK 150 (840)
Q Consensus 83 ~~~~~gr~---~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 150 (840)
+.++.|-+ +|++++++.|.++ -.+=|-++|++|+|||-||++++-...+- |+++|..-=++
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSEFvE 382 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSEFVE 382 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHHHHH
Confidence 33455655 4556666666543 24678899999999999999999877654 45555431111
Q ss_pred HHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc-----------------CccccCCccCCCC--C
Q 003192 151 KMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL-----------------DLETLGIPLGDEH--K 211 (840)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~~~--~ 211 (840)
.+.. ....++..+....+...++++.+|+++... .+.++........ .
T Consensus 383 --------~~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 383 --------MFVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred --------Hhcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1100 012345566666666778999999875321 0112221222222 2
Q ss_pred CcEEEEeeCCcchhhcc----cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 212 GCKVLLTSRSRGVLSRE----MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
+..++-+|...++.+.. -.-...+.++.=+.....++|+-++.. .....+..++.+ |+...-|.+=|..+
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~--~~~~~e~~dl~~-~a~~t~gf~gadl~ 523 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK--KKLDDEDVDLSK-LASLTPGFSGADLA 523 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc--cCCCcchhhHHH-HHhcCCCCcHHHHH
Confidence 23344456666665321 222346777777888889999888432 222244556666 88888888855433
No 203
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.11 E-value=0.0073 Score=72.18 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=37.2
Q ss_pred ccchHHHHHHHHHHhC------CCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 86 FDSRISTFKDITNALS------NPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
++|.++.++++.+++. ....+++.++|++|+|||++|+.+++....
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6788888888888654 223458999999999999999999998753
No 204
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.02 Score=60.65 Aligned_cols=103 Identities=20% Similarity=0.190 Sum_probs=61.5
Q ss_pred HHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCC-cchhhcccCccceEEccCCCHHH
Q 003192 172 RARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRS-RGVLSREMDSEINFLVGILSQEE 244 (840)
Q Consensus 172 ~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~-~~v~~~~~~~~~~~~l~~L~~~~ 244 (840)
.++.+.+.+. .+++-++|+|+++.. .....+...+..-.+++.+|++|.+ ..+.......-..+.+.+++.++
T Consensus 116 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~ 195 (342)
T PRK06964 116 QVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEA 195 (342)
T ss_pred HHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHH
Confidence 3444444443 245668889998765 2344444444444456656655555 44443333334578999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 245 SWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 245 ~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
..+.+... + .+. ...++..++|.|.....+
T Consensus 196 ~~~~L~~~--~-----~~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 196 AAAWLAAQ--G-----VAD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHc--C-----CCh----HHHHHHHcCCCHHHHHHH
Confidence 99888765 1 111 223577889999755443
No 205
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.08 E-value=0.0043 Score=73.41 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=86.4
Q ss_pred cccchHHHHHHHHHHhC------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHH
Q 003192 85 AFDSRISTFKDITNALS------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIAD 158 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 158 (840)
..+|.++.+++|++++. .....++.++|++|+||||+|+.++...... | +-++++...+..++...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchhc
Confidence 36788999999998876 2345689999999999999999999876532 3 22444444444333211110
Q ss_pred HhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC------ccccCCccCC---------------CCCCcEEEE
Q 003192 159 ELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD------LETLGIPLGD---------------EHKGCKVLL 217 (840)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~---------------~~~gs~ili 217 (840)
.. +. ..+...+...... ..+-+++||+++.... ...+...+.. .-...-+|.
T Consensus 398 ~~-----g~-~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~ 470 (784)
T PRK10787 398 YI-----GS-MPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA 470 (784)
T ss_pred cC-----CC-CCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEE
Confidence 11 11 1112211112111 1345788999864321 1111111110 112334445
Q ss_pred eeCCcchhhcccCccceEEccCCCHHHHHHHHHHHH
Q 003192 218 TSRSRGVLSREMDSEINFLVGILSQEESWSLFQKMV 253 (840)
Q Consensus 218 TtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 253 (840)
|+.+..+.....+...++.+.+++.++-.++.++++
T Consensus 471 TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 471 TSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 555444332223344578899999999888887764
No 206
>PHA00729 NTP-binding motif containing protein
Probab=97.05 E-value=0.0028 Score=62.10 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=29.1
Q ss_pred HHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 95 DITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 95 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
++++.+...+...|.|+|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455555555667899999999999999999998753
No 207
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.05 E-value=0.0003 Score=68.89 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=51.9
Q ss_pred hcCCCceeEEEecCC--cCC-CCchhhhcccCCcEEEecCcccCCc---ccccCCCCCCEEeccCCCCCCCc----HHHh
Q 003192 483 FAGMIELRVLDLTKM--HLL-SLPSSLHLLVNLRTLCLDQSVLGDI---AVIGELKQLEILSLSSSDIEHLP----REIG 552 (840)
Q Consensus 483 ~~~l~~L~~L~l~~~--~~~-~lp~~i~~L~~L~~L~L~~~~l~~~---~~i~~L~~L~~L~L~~~~l~~lp----~~i~ 552 (840)
|..|++|+.|.++.| .+. .++....++++|++|++++|++..+ ..+..+.+|..|++.+|..+.+- ..+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 446677777777777 333 4555555667888888888876653 44556667777777777655442 1244
Q ss_pred ccCCCCEEecCC
Q 003192 553 RLSKLRLLDLTN 564 (840)
Q Consensus 553 ~L~~L~~L~l~~ 564 (840)
-+++|.+|+-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 567777776554
No 208
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0023 Score=71.02 Aligned_cols=101 Identities=18% Similarity=0.293 Sum_probs=67.2
Q ss_pred ccccchHHHHHHHHHHhC------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 84 QAFDSRISTFKDITNALS------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 84 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
++-+|.++.+++|++.+. +-+.+++.++|++|||||.+|+.|+.....+ | +-++|+.-.|+.++-.-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGH-- 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGH-- 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhccc--
Confidence 345788888999999885 3356899999999999999999999987654 3 34577777776665311
Q ss_pred HHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 158 DELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
... ......+.+.+.+.... -.+-|+.+|.|+..
T Consensus 484 ---RRT-YVGAMPGkiIq~LK~v~-t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 484 ---RRT-YVGAMPGKIIQCLKKVK-TENPLILIDEVDKL 517 (906)
T ss_pred ---cee-eeccCChHHHHHHHhhC-CCCceEEeehhhhh
Confidence 011 11122333333333333 34678999998654
No 209
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.016 Score=63.41 Aligned_cols=93 Identities=20% Similarity=0.324 Sum_probs=63.1
Q ss_pred cccccchHHHHHHHHHHhC---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHH
Q 003192 83 YQAFDSRISTFKDITNALS---N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIK 150 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 150 (840)
...+-|-++.+.++.+++. . ...+-|.++|++|+|||.||+.++++..+- |+.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4456788888888777764 1 135678899999999999999999988765 3444332
Q ss_pred HHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccc
Q 003192 151 KMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWA 195 (840)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 195 (840)
+|+... .++ ..+.+..+++.-...-++++++|+++-
T Consensus 258 ----eivSGv----SGE-SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGV----SGE-SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhccc----Ccc-cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 122211 122 234566677766667789999999863
No 210
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.011 Score=63.54 Aligned_cols=145 Identities=21% Similarity=0.296 Sum_probs=85.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhH---HHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGR---ARRLYARM 180 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~l~~~l 180 (840)
....+.+.|++|+|||+||..++.... |..+--+ +++++ .+-++... +....+.-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKii------Spe~m------------iG~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKII------SPEDM------------IGLSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEe------ChHHc------------cCccHHHHHHHHHHHHHHh
Confidence 456778899999999999999987643 6544322 11211 11112222 22333333
Q ss_pred HcCCcEEEEEcccccccCccccCCcc---------------CCCCCCcEEEEeeCCcchhhcccCc----cceEEccCCC
Q 003192 181 KEEKKILVILDDIWARLDLETLGIPL---------------GDEHKGCKVLLTSRSRGVLSREMDS----EINFLVGILS 241 (840)
Q Consensus 181 ~~~k~~LlVlDdv~~~~~~~~l~~~l---------------~~~~~gs~iliTtR~~~v~~~~~~~----~~~~~l~~L~ 241 (840)
.+..--.||+||+....+|-.++..+ |..++.--|+-||....|+. .|+- ...|.++.++
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccC
Confidence 34556799999998888877665432 22222233444666666652 2332 2368888888
Q ss_pred H-HHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHc
Q 003192 242 Q-EESWSLFQKMVAEGDCIRNHDLQSLAVAIAKEC 275 (840)
Q Consensus 242 ~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~ 275 (840)
. ++..+.++.. +...+...+..+++...+|
T Consensus 674 ~~~~~~~vl~~~----n~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEEL----NIFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHc----cCCCcchhHHHHHHHhccc
Confidence 7 7777777665 1123444555666666666
No 211
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=6.1e-05 Score=73.56 Aligned_cols=105 Identities=21% Similarity=0.195 Sum_probs=73.1
Q ss_pred CCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCcccccCCCCCCEEeccCCCCCCCcH--HHhccCCCCEEec
Q 003192 485 GMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPR--EIGRLSKLRLLDL 562 (840)
Q Consensus 485 ~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l 562 (840)
.+.+.+.|++-||.+..+. -..+++.|++|.|+-|+|+.+..+..+++|++|+|+.|.|..+.+ .+.++++|+.|.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3556777888888776542 235678888888888888888888888888888888888876643 3577888888888
Q ss_pred CCCCCCccccccccccccccccCChhhhhcCCCCCeEE
Q 003192 563 TNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLE 600 (840)
Q Consensus 563 ~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~ 600 (840)
..|.-.+.-+.+. -..-+.-|++|++|+
T Consensus 96 ~ENPCc~~ag~nY----------R~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNY----------RRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhH----------HHHHHHHcccchhcc
Confidence 7765544433311 122355677777765
No 212
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.96 E-value=0.0046 Score=70.21 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=42.0
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.|.....++|++..++.+...+......-|.|+|++|+|||++|+.+++...
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455667899999999998877655455678999999999999999987543
No 213
>PRK12377 putative replication protein; Provisional
Probab=96.95 E-value=0.0053 Score=61.91 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=47.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEK 184 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 184 (840)
...+.++|.+|+|||+||..+++....+ ...++++++. ++...+....... .....+.+.+. +
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l~--~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQELC--K 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHhc--C
Confidence 4678999999999999999999988754 3346776543 4444444433211 01223444553 4
Q ss_pred cEEEEEcccc
Q 003192 185 KILVILDDIW 194 (840)
Q Consensus 185 ~~LlVlDdv~ 194 (840)
--||||||+.
T Consensus 164 ~dLLiIDDlg 173 (248)
T PRK12377 164 VDLLVLDEIG 173 (248)
T ss_pred CCEEEEcCCC
Confidence 5799999994
No 214
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.95 E-value=0.00013 Score=83.27 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=92.9
Q ss_pred hcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccc---cccccccc
Q 003192 659 LKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTN---LEKICNGR 735 (840)
Q Consensus 659 l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~---l~~i~~~~ 735 (840)
+++|+.|.+.+|..+++..-......+++|++|++++|..+..-. ... ....+++|+.|.+..+.. ++......
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~--l~~-~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG--LEA-LLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH--HHH-HHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 679999998888764433222233678999999999998762210 011 123477777766655443 43331111
Q ss_pred cCcccC-CCCCEEEEecCCCCcccccHHHhhhcccCc-EEEEcccccc-hhhccccccccccchhhcccccccccccccc
Q 003192 736 LTAASF-CNLGIIKVGNCNKLKSILSVSIARGLQQLQ-VIDVTECKSM-EVILGTEEERISSNQEIELITPRGIQKCSLT 812 (840)
Q Consensus 736 ~~~~~l-~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~-~L~l~~c~~l-~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 812 (840)
. .... ..+..+.+.+|++++.+-- .... ..... .+.+.+|+.+ ..+..... ....++.|.+..|...
T Consensus 345 ~-~~~~~d~~~~~~~~~~~~l~~~~l-~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~-------~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 345 L-LTLTSDDLAELILRSCPKLTDLSL-SYCG-ISDLGLELSLRGCPNLTESLELRLC-------RSDSLRVLNLSDCRLV 414 (482)
T ss_pred h-hccCchhHhHHHHhcCCCcchhhh-hhhh-ccCcchHHHhcCCcccchHHHHHhc-------cCCccceEecccCccc
Confidence 0 0111 2577777788887777632 2222 33333 4667778777 22211111 1112778888888765
Q ss_pred cccccCc-cc-ccccceeecCCCCCccC
Q 003192 813 AEAATNE-IT-FSKLKSLSLSYLPSLTS 838 (840)
Q Consensus 813 ~~~~~~l-~~-l~~L~~L~L~~cp~L~~ 838 (840)
...-... .. +.++..+.+.+|+.+..
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cccchHHHhhhhhccccCCccCcccccc
Confidence 4322111 11 66778888888877653
No 215
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0075 Score=63.62 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=29.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV 143 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 143 (840)
...+.++|.+|+|||+||..+++....+. ..++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 37799999999999999999999886542 24677654
No 216
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.89 E-value=0.0023 Score=76.55 Aligned_cols=103 Identities=16% Similarity=0.266 Sum_probs=58.9
Q ss_pred cccchHHHHHHHHHHhC-------CC--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 85 AFDSRISTFKDITNALS-------NP--SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.++|.+..++.+.+.+. ++ ...++.++|++|+|||.+|+.++...-.. ....+-++++.-.+.. .
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~----~ 640 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH----T 640 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----h
Confidence 47788988888888874 11 23478999999999999999998876432 2223333333221111 1
Q ss_pred HHHHhCCCcc--ccChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 156 IADELGLFLC--EESESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 156 i~~~l~~~~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
+.+-++.... +....+ .+.+.+.+...-+|+||++...
T Consensus 641 ~~~l~g~~~gyvg~~~~g---~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGG---VLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hccccCCCCCcccccccc---hHHHHHHhCCCcEEEEechhhc
Confidence 1111222111 111111 2334444456679999999754
No 217
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.89 E-value=0.00083 Score=60.10 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+|+|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999863
No 218
>PRK06526 transposase; Provisional
Probab=96.89 E-value=0.0011 Score=67.38 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=43.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEK 184 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 184 (840)
..-+.|+|++|+|||+||..+.+..... .+ .+.|+ +..++...+...... +........+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~~~--------~~~~~~l~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAHHA--------GRLQAELVKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHHhc--------CcHHHHHHHhc--c
Confidence 4568999999999999999998876543 23 23443 334444444332110 11222233333 3
Q ss_pred cEEEEEccccc
Q 003192 185 KILVILDDIWA 195 (840)
Q Consensus 185 ~~LlVlDdv~~ 195 (840)
.-+||+||+..
T Consensus 160 ~dlLIIDD~g~ 170 (254)
T PRK06526 160 YPLLIVDEVGY 170 (254)
T ss_pred CCEEEEccccc
Confidence 46899999964
No 219
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.88 E-value=0.0026 Score=70.82 Aligned_cols=76 Identities=21% Similarity=0.410 Sum_probs=56.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHc
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKE 182 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 182 (840)
+.-++.-++|++|+||||||..++++.. | .|+-|++|...+...+-..|...+....... ..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ad 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------AD 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cC
Confidence 3467999999999999999999998875 3 3788999999888888777776654321110 01
Q ss_pred CCcEEEEEcccccc
Q 003192 183 EKKILVILDDIWAR 196 (840)
Q Consensus 183 ~k~~LlVlDdv~~~ 196 (840)
+++.-||+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 56788888988654
No 220
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.87 E-value=0.00084 Score=61.78 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=33.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 108 IGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
|.++|++|+|||+||+.+++..... ..-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~-----~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRP-----VIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCE-----EEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcc-----eEEEEeccccccccceee
Confidence 6789999999999999999988322 445688888888776543
No 221
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.85 E-value=0.0011 Score=64.29 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEE
Q 003192 89 RISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFV 141 (840)
Q Consensus 89 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 141 (840)
+..+....++.|. ...+|.+.|++|.|||.||...+-+.-..+.|+.++++
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3344455666665 45799999999999999999888766555778888776
No 222
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.85 E-value=0.005 Score=61.20 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=36.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 154 (840)
..++-|+|++|+|||++|.+++...... -..++|++... ++..++.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 4799999999999999999988766433 45789998865 66655544
No 223
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.84 E-value=0.0042 Score=73.75 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=59.6
Q ss_pred cccchHHHHHHHHHHhCC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 85 AFDSRISTFKDITNALSN-------P--SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.++|.+..++.+...+.. + ...++.++|++|+|||++|+.+++... ...+.++++.-.+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc----
Confidence 367888888888877651 1 234678999999999999999998763 2345666554322111
Q ss_pred HHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 156 IADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
+...++... +....+....+.+.+.....-+++||+++..
T Consensus 526 ~~~lig~~~-gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPP-GYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCC-CCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 112222211 1001111223334444444579999999754
No 224
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.84 E-value=0.034 Score=59.37 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCCcEEEEEeCCC---ccHHHHHHHHHHHhCCCc
Q 003192 89 RISTFKDITNALSNPSVDMIGICGMGGIGKTMLV-KEIARQVKGHKLFDEVVFVDVPQI---PDIKKMQGQIADELGLFL 164 (840)
Q Consensus 89 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~~~~ 164 (840)
|.+..++|-.||.+..-.+|.|.||-|.||+.|+ .++.++.+ .++.+++.+- .+-..+.+.++.++|-..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999877789999999999999999 66665432 2555544332 123344555555553210
Q ss_pred -----------------------c--ccChhhHHHHHHH-------H--------------------HH--cCCcEEEEE
Q 003192 165 -----------------------C--EESESGRARRLYA-------R--------------------MK--EEKKILVIL 190 (840)
Q Consensus 165 -----------------------~--~~~~~~~~~~l~~-------~--------------------l~--~~k~~LlVl 190 (840)
. .++....+..+++ . +. ..++-++|+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 0 0111111111111 0 00 123679999
Q ss_pred ccccccc-----------CccccCCccCCCCCCcEEEEeeCCcchhh---ccc--CccceEEccCCCHHHHHHHHHHHHh
Q 003192 191 DDIWARL-----------DLETLGIPLGDEHKGCKVLLTSRSRGVLS---REM--DSEINFLVGILSQEESWSLFQKMVA 254 (840)
Q Consensus 191 Ddv~~~~-----------~~~~l~~~l~~~~~gs~iliTtR~~~v~~---~~~--~~~~~~~l~~L~~~~~~~lf~~~~~ 254 (840)
|+..... +|.. .+- ..+=..||++|-+..... ... .....+.+...+.+.|.++...++.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa---~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAA---SLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHH---HHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9975432 2332 121 233456888877754431 112 3445788999999999999998864
Q ss_pred cCCCC------------CC-----cchHHHHHHHHHHcCCChHHHHHHHHHHh-ccCH
Q 003192 255 EGDCI------------RN-----HDLQSLAVAIAKECAGLPIAIVTIAKALR-EENL 294 (840)
Q Consensus 255 ~~~~~------------~~-----~~~~~~~~~i~~~~~G~Plai~~~~~~l~-~~~~ 294 (840)
..... .. .....-....++..||==.-+..+++.++ +.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 32100 00 12344556778888998889999998888 4444
No 225
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.83 E-value=0.0072 Score=72.05 Aligned_cols=175 Identities=14% Similarity=0.237 Sum_probs=92.6
Q ss_pred cccccchHHHHHHHHHHhCC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALSN-------------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+.++.|.++.++++.+++.- ...+-|.++|++|+|||++|+.+++..... | +.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecH-----
Confidence 44577998888888777631 223578899999999999999999876432 2 222211
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--------C-----ccccCCccCC-CCCCcEE
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--------D-----LETLGIPLGD-EHKGCKV 215 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~-----~~~l~~~l~~-~~~gs~i 215 (840)
++. .. ..+. .......+++......+.+|++|+++... + ...+...+.. ...+..+
T Consensus 247 -~i~----~~----~~g~-~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIM----SK----YYGE-SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHh----cc----cccH-HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 111 00 0011 11233444444444567899999985421 0 0111111111 1223334
Q ss_pred EE-eeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHH
Q 003192 216 LL-TSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIA 281 (840)
Q Consensus 216 li-TtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 281 (840)
+| ||....-..... .-...+.+...+.++-.++++.... ...... ......+++.+.|.--|
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCcc--ccCHHHHHHhCCCCCHH
Confidence 44 444332111111 1124577787888888888875521 111111 12356788888886543
No 226
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0019 Score=74.12 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=93.7
Q ss_pred CCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCC----CcEEEEEeCCCccHHHHHHHH
Q 003192 81 KGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLF----DEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i 156 (840)
....+++||++++.++++.|....-.--.++|.+|||||++|.-++.+.....-- +..++- .|+..+
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~g~L---- 237 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDLGSL---- 237 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecHHHH----
Confidence 4466789999999999999985433333478999999999999998877544211 111211 011111
Q ss_pred HHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC--------ccc--cCCccCCCCCCcEEEEeeCCcchh-
Q 003192 157 ADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD--------LET--LGIPLGDEHKGCKVLLTSRSRGVL- 225 (840)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------~~~--l~~~l~~~~~gs~iliTtR~~~v~- 225 (840)
..|....++ -.++...+.+.+.+.++.+|++|.++.... .++ +..|-...+.--.|=.||-++.--
T Consensus 238 --vAGakyRGe-FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 238 --VAGAKYRGE-FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred --hccccccCc-HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 112222222 234566677777766689999999875421 222 111111222223455677665320
Q ss_pred ----hcccCccceEEccCCCHHHHHHHHHHH
Q 003192 226 ----SREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 226 ----~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
.........+.++.-+.+++..+++..
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 011233457888888999988888643
No 227
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.82 E-value=0.015 Score=56.70 Aligned_cols=172 Identities=20% Similarity=0.295 Sum_probs=96.6
Q ss_pred cccccchHHHHHH---HHHHhCCC------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHH
Q 003192 83 YQAFDSRISTFKD---ITNALSNP------SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQ 153 (840)
Q Consensus 83 ~~~~~gr~~~~~~---l~~~l~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 153 (840)
..+++|.++...+ |++.|.++ ..+-|..+|++|.|||.+|+.+++..++- | +.|. ..+++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~li 188 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATELI 188 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHHHH
Confidence 4557888766544 56666644 36789999999999999999999987754 2 2221 11111
Q ss_pred HHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc---c-------C----ccccCCccC--CCCCCcEEEE
Q 003192 154 GQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR---L-------D----LETLGIPLG--DEHKGCKVLL 217 (840)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~---~-------~----~~~l~~~l~--~~~~gs~ili 217 (840)
. +..| +....+.++.++..+--++++.+|.++-. . + ..++...+. ..+.|...|-
T Consensus 189 G---ehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 189 G---EHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred H---HHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1 1111 12345666666666667899999987532 0 1 112222222 1345665565
Q ss_pred eeCCcchhhcccCc--cceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCC
Q 003192 218 TSRSRGVLSREMDS--EINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGL 278 (840)
Q Consensus 218 TtR~~~v~~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 278 (840)
.|-..+++...+.. ...++..-=++++-.+++..++-.-..+ .+...+.++++.+|.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp----v~~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP----VDADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc----cccCHHHHHHHhCCC
Confidence 56655554322222 2345555557778888887774221111 122245566666654
No 228
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.80 E-value=0.014 Score=69.60 Aligned_cols=173 Identities=17% Similarity=0.233 Sum_probs=94.3
Q ss_pred cccccchHHHHHHHHHHhC-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALS-------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+..+.|.+..++.+.+.+. -...+-|.++|++|+|||++|+.+++..... | +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH---
Confidence 4446677777666666543 1224568899999999999999999986532 2 222211
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--------C------ccccCCccCC--CCCCc
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--------D------LETLGIPLGD--EHKGC 213 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~------~~~l~~~l~~--~~~gs 213 (840)
+ +... ..+++ ...+..+.+......+.+|++|+++... . ...+...+.. ...+.
T Consensus 522 -~----l~~~----~vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -E----ILSK----WVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -H----Hhhc----ccCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 1 1111 11111 2234455555555678999999986421 0 0111111111 12344
Q ss_pred EEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 214 KVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 214 ~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
.||.||...+...... .-...+.++..+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 4555665554432111 2345788888899988899876632111111112 456777787754
No 229
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.024 Score=62.90 Aligned_cols=154 Identities=17% Similarity=0.218 Sum_probs=80.4
Q ss_pred CCcccccchHHHHHHHHHHhC-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc
Q 003192 81 KGYQAFDSRISTFKDITNALS-------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP 147 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 147 (840)
..+.++-|-++.+.+|-+... -...+-|-.+|++|+|||++|+.+++..... | +.|+..
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp- 502 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP- 502 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH-
Confidence 344455566655555554443 1346789999999999999999999987765 4 333221
Q ss_pred cHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC-------------ccccCCccCCCCCCcE
Q 003192 148 DIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD-------------LETLGIPLGDEHKGCK 214 (840)
Q Consensus 148 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~gs~ 214 (840)
+ +... +.++++ ..+..+++.-++--++++.||.++.... +..+...+........
T Consensus 503 ---E----L~sk----~vGeSE-r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 ---E----LFSK----YVGESE-RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred ---H----HHHH----hcCchH-HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 1 1110 111111 1233334443334568888887753210 1111111111111222
Q ss_pred EEE---eeCCcchhhcccC---ccceEEccCCCHHHHHHHHHHHHh
Q 003192 215 VLL---TSRSRGVLSREMD---SEINFLVGILSQEESWSLFQKMVA 254 (840)
Q Consensus 215 ili---TtR~~~v~~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~ 254 (840)
|+| |-|...+-...+. -+..+.++.=+.+.-.++|+.++-
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 333 4444333222233 345677777777778899988853
No 230
>PRK09183 transposase/IS protein; Provisional
Probab=96.80 E-value=0.0024 Score=65.36 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
...|.|+|++|+|||+||..+.+....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999877543
No 231
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0044 Score=66.46 Aligned_cols=93 Identities=24% Similarity=0.345 Sum_probs=60.5
Q ss_pred cccccch---HHHHHHHHHHhCCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHH
Q 003192 83 YQAFDSR---ISTFKDITNALSNPS---------VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIK 150 (840)
Q Consensus 83 ~~~~~gr---~~~~~~l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 150 (840)
+.++.|- ..|+++|++.|.++. .+-|.++|++|.|||-||+.++-...+. | |...+..|+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdE- 375 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDE- 375 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhh-
Confidence 3344454 466788888887541 3678999999999999999999877665 2 3333333322
Q ss_pred HHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccc
Q 003192 151 KMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWA 195 (840)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 195 (840)
++.. -...++..+++.-+..-+++|.+|.++.
T Consensus 376 -m~VG------------vGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 376 -MFVG------------VGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred -hhhc------------ccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 1110 1123455566666666789999999864
No 232
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.76 E-value=0.002 Score=67.57 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=40.7
Q ss_pred cccchHHHHHHHHHHhC------CCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 85 AFDSRISTFKDITNALS------NPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
.++|.++.++++++++. ....++++++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 68899999999999985 224578999999999999999999998764
No 233
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.73 E-value=0.0046 Score=74.30 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=40.5
Q ss_pred cccchHHHHHHHHHHhCC-------CC--ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeC
Q 003192 85 AFDSRISTFKDITNALSN-------PS--VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVP 144 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~-------~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 144 (840)
.++|.+..++.+...+.. ++ ..++.++|+.|+|||++|+.+++..... -...+.++++
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~s 635 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMS 635 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhH
Confidence 367888888887777651 11 2478899999999999999999866422 1234455544
No 234
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.73 E-value=0.0039 Score=75.19 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=60.1
Q ss_pred cccchHHHHHHHHHHhCC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 85 AFDSRISTFKDITNALSN-------P--SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.++|.+..++.+...+.. + ...++.++|++|+|||++|+.+....... -...+.++++.-.+...+
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~--- 640 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV--- 640 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH---
Confidence 478889999888888752 1 13468899999999999999999876432 223455555543221111
Q ss_pred HHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 156 IADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
.+-++... +-..-+....+.+.+......+|+||++...
T Consensus 641 -~~l~g~~~-g~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 -ARLIGAPP-GYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHhcCCCC-CccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 11122211 1000001122333444344469999999754
No 235
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.018 Score=57.27 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=61.1
Q ss_pred cccccchHHHHHHHHHHhC------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHH
Q 003192 83 YQAFDSRISTFKDITNALS------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIK 150 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 150 (840)
+.++.|-+...+.+.+... ...-+-|.++|++|.||+.||+.|+...... |++||...-+
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSSDLv- 203 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSSDLV- 203 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehHHHH-
Confidence 4446677777777766643 1235789999999999999999999877643 3455553211
Q ss_pred HHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccc
Q 003192 151 KMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWA 195 (840)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 195 (840)
.+.++. .......+++-.++.|+-+|++|.|+.
T Consensus 204 ------SKWmGE------SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 204 ------SKWMGE------SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ------HHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 122221 123455566666668899999999864
No 236
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.73 E-value=0.0035 Score=58.33 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
...++.++|++|.||||+.+.+|...+..
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence 45789999999999999999999887643
No 237
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.73 E-value=0.0041 Score=64.82 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
....++|||++|+|||.+|+.++++....
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 45789999999999999999999998754
No 238
>PRK04132 replication factor C small subunit; Provisional
Probab=96.73 E-value=0.03 Score=65.98 Aligned_cols=153 Identities=11% Similarity=0.049 Sum_probs=92.2
Q ss_pred CCCCcHHHHHHHHHHHhhccCCC-CcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEc
Q 003192 113 MGGIGKTMLVKEIARQVKGHKLF-DEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILD 191 (840)
Q Consensus 113 ~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlD 191 (840)
|.++||||+|..++++.-.. .+ ..++-++.+....+..+. ++++.+....+ +...+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 77999999999999987432 13 246778888766665443 33332211100 001245799999
Q ss_pred cccccc--CccccCCccCCCCCCcEEEEeeCCc-chhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHH
Q 003192 192 DIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLA 268 (840)
Q Consensus 192 dv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 268 (840)
+++... ..+.+...+......+++|+++-+. .+..........+.+.+++.++-.+.+.+.+...+. .-.++..
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi---~i~~e~L 714 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL---ELTEEGL 714 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC---CCCHHHH
Confidence 998653 3344433333333456666655554 332222233458999999999888877766432221 1235678
Q ss_pred HHHHHHcCCChHHHHH
Q 003192 269 VAIAKECAGLPIAIVT 284 (840)
Q Consensus 269 ~~i~~~~~G~Plai~~ 284 (840)
..|++.++|.+..+..
T Consensus 715 ~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 715 QAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHcCCCHHHHHH
Confidence 8999999998854443
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0088 Score=60.85 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=53.2
Q ss_pred HHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHH
Q 003192 94 KDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRA 173 (840)
Q Consensus 94 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 173 (840)
..+.+++. ...-+.++|.+|+|||.||..+.++.. +..+ .+.+++ ..++..++...... ....
T Consensus 96 ~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~-------~~~~ 158 (254)
T COG1484 96 ASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE-------GRLE 158 (254)
T ss_pred HHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc-------CchH
Confidence 33444554 567899999999999999999999988 4323 355553 45555666555432 1112
Q ss_pred HHHHHHHHcCCcEEEEEccccc
Q 003192 174 RRLYARMKEEKKILVILDDIWA 195 (840)
Q Consensus 174 ~~l~~~l~~~k~~LlVlDdv~~ 195 (840)
.++.+.+. +-=||||||+-.
T Consensus 159 ~~l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 159 EKLLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred HHHHHHhh--cCCEEEEecccC
Confidence 23344343 345999999854
No 240
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.00095 Score=65.44 Aligned_cols=112 Identities=21% Similarity=0.187 Sum_probs=82.8
Q ss_pred cccccccEEeecccCCCCCCCcCCCCCceEEEecCC--CCCCCCChhhhcCCCceeEEEecCCcCCCC--chhhhcccCC
Q 003192 437 DTLKFCTAISLHKCDVNELPEELECPQLKFFYMYPK--DPALKIPDKFFAGMIELRVLDLTKMHLLSL--PSSLHLLVNL 512 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l--p~~i~~L~~L 512 (840)
+....+.++++.+..+..+.....+++|+.|.++.| .....++.- ...+++|++|++++|.+.-+ -..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcch
Confidence 345677888888888877766668999999999999 555444432 45669999999999998742 1246788899
Q ss_pred cEEEecCcccCCc-----ccccCCCCCCEEeccCCCCCCCcH
Q 003192 513 RTLCLDQSVLGDI-----AVIGELKQLEILSLSSSDIEHLPR 549 (840)
Q Consensus 513 ~~L~L~~~~l~~~-----~~i~~L~~L~~L~L~~~~l~~lp~ 549 (840)
..|++.+|..+.. ..+.-+++|.+||-....=.+.|.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence 9999999986663 336678999998766554444444
No 241
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.68 E-value=0.0064 Score=73.19 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=59.8
Q ss_pred ccccchHHHHHHHHHHhC-------CCC--ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHH
Q 003192 84 QAFDSRISTFKDITNALS-------NPS--VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 84 ~~~~gr~~~~~~l~~~l~-------~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 154 (840)
..++|.+..++.+...+. ++. ...+.++|+.|+|||++|+.+++..-.. -...+-++++.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 347799999998888774 111 3356789999999999999999876322 123444555443222211
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
.+-++.. ++-...+....+.+.+......+++||+++..
T Consensus 585 --~~l~g~~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSP-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCC-CcccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 1112211 11000011123344454444468999999754
No 242
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.016 Score=62.18 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=79.1
Q ss_pred ccchHHHHHHHHHHhC-CCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCcEEEEEeC
Q 003192 86 FDSRISTFKDITNALS-NPSVD-MIGICGMGGIGKTMLVKEIARQVKGHKL-------------------FDEVVFVDVP 144 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~-~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs 144 (840)
+++.+....++..+.. .+..+ .+-++|++|+||||+|..+++....... ...+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566667777777776 33344 4999999999999999999998763321 2334555555
Q ss_pred CCcc---HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEee
Q 003192 145 QIPD---IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTS 219 (840)
Q Consensus 145 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt 219 (840)
.... ..+..+++.+....... .++.-++++|+++... .-.++...+......+++|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4443 23334444443322211 2567899999997652 2233333333344567777777
Q ss_pred CCc-chhhcccCccceEEccC
Q 003192 220 RSR-GVLSREMDSEINFLVGI 239 (840)
Q Consensus 220 R~~-~v~~~~~~~~~~~~l~~ 239 (840)
... .+..........+.+.+
T Consensus 147 n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CChhhccchhhhcceeeecCC
Confidence 643 33222122233556655
No 243
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0047 Score=72.49 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=58.4
Q ss_pred cccchHHHHHHHHHHhCC---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 85 AFDSRISTFKDITNALSN---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.++|.++.++.+.+.+.. .....+.++|++|+|||++|+.++..... ..+.++++.-.+.. .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 367888888888888751 12457889999999999999999887732 23344444322211 1
Q ss_pred HHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 156 IADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
+.+-++... +.........+.+.+......+++||+++..
T Consensus 530 ~~~LiG~~~-gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPP-GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCC-CcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 222223211 1000001112233344344579999999765
No 244
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.63 E-value=0.0098 Score=57.89 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=52.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCCCcccc----ChhhHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGLFLCEE----SESGRARRLYARM 180 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~~l 180 (840)
++|.++|+.|+||||.+.+++.....+ =..+..++... .....+-++..++.++...... +..+.+....+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 689999999999999988888877655 33466776643 2345566677788887653321 2223333444444
Q ss_pred HcCCcEEEEEccc
Q 003192 181 KEEKKILVILDDI 193 (840)
Q Consensus 181 ~~~k~~LlVlDdv 193 (840)
..++.=++++|-.
T Consensus 80 ~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 80 RKKGYDLVLIDTA 92 (196)
T ss_dssp HHTTSSEEEEEE-
T ss_pred hhcCCCEEEEecC
Confidence 4333346677754
No 245
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00016 Score=70.67 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=74.8
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCc---ccccCCCCCCE
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDI---AVIGELKQLEI 536 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~---~~i~~L~~L~~ 536 (840)
.+.+.+.|++.++++. ++ ++..+|+.|+||.||-|.|+.+- .+..+++|+.|.|+.|.|.++ .-+.+|++|+.
T Consensus 17 dl~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 3557778888888774 22 35778999999999999998874 478899999999999998875 44678899999
Q ss_pred EeccCCCCC--CCc----HHHhccCCCCEEe
Q 003192 537 LSLSSSDIE--HLP----REIGRLSKLRLLD 561 (840)
Q Consensus 537 L~L~~~~l~--~lp----~~i~~L~~L~~L~ 561 (840)
|-|..|.-. .-+ ..+.-|+||+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999887433 222 2356788888886
No 246
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.61 E-value=0.011 Score=61.97 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHhCC----CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCC
Q 003192 88 SRISTFKDITNALSN----PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLF 163 (840)
Q Consensus 88 gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 163 (840)
+|........+++.+ ...+-+.++|..|+|||.||..+++....+ .+ .+.|++++ ++...+.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEHH------HHHHHHHHHHhcC
Confidence 455555555555542 234679999999999999999999998643 23 35666543 4555555444211
Q ss_pred ccccChhhHHHHHHHHHHcCCcEEEEEccccc
Q 003192 164 LCEESESGRARRLYARMKEEKKILVILDDIWA 195 (840)
Q Consensus 164 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 195 (840)
......+.+. +-=||||||+.-
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecCCC
Confidence 1233444443 457999999853
No 247
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.60 E-value=0.0079 Score=61.05 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=38.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCcEEEEEeCCCccHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKL----FDEVVFVDVPQIPDIKKMQGQIADEL 160 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l 160 (840)
..++.|+|.+|+|||++|.+++-....... -..++|++....++.+++. ++++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 469999999999999999998754322211 2578999888777665553 334443
No 248
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.23 Score=53.11 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
|-.-++|++|.|||+++.+++|... ||..- +..+...+-.+ ++.++ ..- ..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d-Lr~LL--------------------~~t--~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD-LRHLL--------------------LAT--PNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH-HHHHH--------------------HhC--CCC
Confidence 5667999999999999999999876 54321 22222211111 22222 111 235
Q ss_pred EEEEEcccccccCc-----------c-------------ccCCccCCCCCCcE-EEEeeCCcchhhc-ccC---ccceEE
Q 003192 186 ILVILDDIWARLDL-----------E-------------TLGIPLGDEHKGCK-VLLTSRSRGVLSR-EMD---SEINFL 236 (840)
Q Consensus 186 ~LlVlDdv~~~~~~-----------~-------------~l~~~l~~~~~gs~-iliTtR~~~v~~~-~~~---~~~~~~ 236 (840)
-+||+.|++-..++ + .+-..+..++ +-| ||.||-+.+-+.. .+. -...+.
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-DERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC-CceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 66677666432110 0 0111111122 224 4557776655421 111 223577
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 237 VGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 237 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
+.--+.+.-..||..++.... ...++.+|.+.-.|.-..=+.+|..|
T Consensus 367 mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 888888888889888843211 23455666665555544444455444
No 249
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.59 E-value=0.022 Score=60.24 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=54.1
Q ss_pred HHHHHHHhCCC----CccEEEEEcCCCCcHH-HHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCCCccc
Q 003192 93 FKDITNALSNP----SVDMIGICGMGGIGKT-MLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGLFLCE 166 (840)
Q Consensus 93 ~~~l~~~l~~~----~~~vi~I~G~~GiGKT-tLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~ 166 (840)
...+..++.++ +.++|.+||+.||||| |||+..+.-....+ =..+..++... .....+=++.-++-++.....
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 33444444433 3689999999999999 56665555441221 23466676543 223334445556666766655
Q ss_pred cChhhHHHHHHHHHHcCCcEEEEEccc
Q 003192 167 ESESGRARRLYARMKEEKKILVILDDI 193 (840)
Q Consensus 167 ~~~~~~~~~l~~~l~~~k~~LlVlDdv 193 (840)
..+..........+.. + =++.+|-+
T Consensus 266 v~~~~el~~ai~~l~~-~-d~ILVDTa 290 (407)
T COG1419 266 VYSPKELAEAIEALRD-C-DVILVDTA 290 (407)
T ss_pred ecCHHHHHHHHHHhhc-C-CEEEEeCC
Confidence 4444445555555542 2 34445554
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.012 Score=62.78 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=53.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
..+|.++|+.|+||||++.+++.....+.....+..++... .....+-++...+.++..................+. +
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-N 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-C
Confidence 46999999999999999999998764331123455565332 223445555666666665443322223334444444 3
Q ss_pred CcEEEEEcccc
Q 003192 184 KKILVILDDIW 194 (840)
Q Consensus 184 k~~LlVlDdv~ 194 (840)
+-++++|..-
T Consensus 216 -~DlVLIDTaG 225 (374)
T PRK14722 216 -KHMVLIDTIG 225 (374)
T ss_pred -CCEEEEcCCC
Confidence 4566789874
No 251
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.59 E-value=0.016 Score=58.23 Aligned_cols=91 Identities=14% Similarity=0.267 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhCC--CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCcccc
Q 003192 90 ISTFKDITNALSN--PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEE 167 (840)
Q Consensus 90 ~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 167 (840)
...+..+.+...+ .....+.++|.+|+|||+||..+++..... -..+++++ ..++...+...... ..
T Consensus 82 ~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~- 150 (244)
T PRK07952 82 MNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SE- 150 (244)
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--cc-
Confidence 3345555554432 223578999999999999999999987654 23456663 34455544443321 01
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 168 SESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 168 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
.....+.+.+. +.=+||+||+...
T Consensus 151 ---~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 ---TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ---ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11223445554 3458899998543
No 252
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.54 E-value=0.0073 Score=58.11 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEE
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFV 141 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 141 (840)
...+|.+.|++|+||||+|+.+++..... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 34699999999999999999999988654 5555555
No 253
>PRK06696 uridine kinase; Validated
Probab=96.52 E-value=0.0043 Score=62.21 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHhC---CCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 88 SRISTFKDITNALS---NPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 88 gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
.|.+.+++|.+.+. .+...+|+|.|.+|+||||+|+.+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46666777777764 345779999999999999999999998754
No 254
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.51 E-value=0.016 Score=58.29 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=36.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCcEEEEEeCCCccHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK----LFDEVVFVDVPQIPDIKKMQ 153 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~ 153 (840)
..++.|+|.+|+|||++|.+++....... .=..++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 46999999999999999999876653221 01457899887777766554
No 255
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.45 E-value=0.019 Score=58.23 Aligned_cols=91 Identities=20% Similarity=0.304 Sum_probs=57.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCC-CcEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccChh----
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLF-DEVVFVDVPQIP-DIKKMQGQIADELGLFL-------CEESES---- 170 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~---- 170 (840)
....++|+|.+|+||||||+.+++....+ | +.++++-+.+.. .+.++.+++...-.... .+++..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 34689999999999999999999988764 4 445666666654 45666666654321110 011111
Q ss_pred --hHHHHHHHHHH-c-CCcEEEEEcccccc
Q 003192 171 --GRARRLYARMK-E-EKKILVILDDIWAR 196 (840)
Q Consensus 171 --~~~~~l~~~l~-~-~k~~LlVlDdv~~~ 196 (840)
..+..+.+++. + ++.+|+++||+-..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 12233445554 3 78999999998543
No 256
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.41 E-value=0.015 Score=60.71 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRARRLYA 178 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~ 178 (840)
..+++-|+|++|+||||||.++....... -..++|++....++.. .+++++.+... ....+.+..+.+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34799999999999999999877665433 3457899777666553 34555543211 111122222333
Q ss_pred HH-HcCCcEEEEEcccc
Q 003192 179 RM-KEEKKILVILDDIW 194 (840)
Q Consensus 179 ~l-~~~k~~LlVlDdv~ 194 (840)
.+ ..+..-++|+|.|.
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 33 33556799999985
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.41 E-value=0.019 Score=54.33 Aligned_cols=39 Identities=31% Similarity=0.420 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP 147 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 147 (840)
++.|+|.+|+||||+|..+....... -..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence 46899999999999999998877542 3457788776554
No 258
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.40 E-value=0.029 Score=57.30 Aligned_cols=57 Identities=33% Similarity=0.454 Sum_probs=41.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCcEEEEEeCCCccHHHHHHHHHHHhCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK----LFDEVVFVDVPQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 162 (840)
..++=|+|.+|+|||.|+.+++-...... .=..++|++-...+..+++. +|+++.+.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 36999999999999999988765432211 12358999999999988875 56776543
No 259
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.38 E-value=0.0063 Score=58.28 Aligned_cols=74 Identities=26% Similarity=0.388 Sum_probs=45.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEK 184 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 184 (840)
..-+.++|.+|+|||.||..+.+....+. + .+.|++ ..+++..+-. .... .......+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~------~~~L~~~l~~----~~~~----~~~~~~~~~l~--~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFIT------ASDLLDELKQ----SRSD----GSYEELLKRLK--R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEE------HHHHHHHHHC----CHCC----TTHCHHHHHHH--T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEee------cCceeccccc----cccc----cchhhhcCccc--c
Confidence 46799999999999999999998776532 2 366664 3444444432 1111 11233455565 2
Q ss_pred cEEEEEcccccc
Q 003192 185 KILVILDDIWAR 196 (840)
Q Consensus 185 ~~LlVlDdv~~~ 196 (840)
-=||||||+-..
T Consensus 109 ~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 VDLLILDDLGYE 120 (178)
T ss_dssp SSCEEEETCTSS
T ss_pred ccEeccccccee
Confidence 458899998543
No 260
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.38 E-value=0.017 Score=59.95 Aligned_cols=87 Identities=18% Similarity=0.267 Sum_probs=48.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
.++|+|+|++|+||||++..++..+..+..-..+..|+..... ...+-+....+.++...............++.+. +
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~ 272 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-D 272 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-C
Confidence 4699999999999999999998877543111245556544321 2223333334444544332222233344444443 2
Q ss_pred CcEEEEEccc
Q 003192 184 KKILVILDDI 193 (840)
Q Consensus 184 k~~LlVlDdv 193 (840)
.=++++|..
T Consensus 273 -~d~vliDt~ 281 (282)
T TIGR03499 273 -KDLILIDTA 281 (282)
T ss_pred -CCEEEEeCC
Confidence 346777753
No 261
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.016 Score=64.60 Aligned_cols=160 Identities=17% Similarity=0.164 Sum_probs=85.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC--ccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI--PDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
.-|-|.|+.|+|||+||+.+++.+. +.+.-.+.+|+.+.- ...+.+++.+...+ .+.+. .
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~~-~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEALW-Y 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHHh-h
Confidence 5789999999999999999999987 334445666665542 23455554443322 11122 4
Q ss_pred CcEEEEEcccccc--------cCccc----cCCcc----C-CCCCCcE--EEEeeCCcchhhc----ccCccceEEccCC
Q 003192 184 KKILVILDDIWAR--------LDLET----LGIPL----G-DEHKGCK--VLLTSRSRGVLSR----EMDSEINFLVGIL 240 (840)
Q Consensus 184 k~~LlVlDdv~~~--------~~~~~----l~~~l----~-~~~~gs~--iliTtR~~~v~~~----~~~~~~~~~l~~L 240 (840)
.+-++||||++-. .+|.. +...+ . ....+.+ +|.|....+-... ..--.....+.++
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 5789999998532 12211 00000 0 1223333 4444443322211 1112236778888
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHH
Q 003192 241 SQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAG-LPIAIVTIA 286 (840)
Q Consensus 241 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~ 286 (840)
...+-.++++... ... ..+ ...+...-+..+|+| .|.-+.++.
T Consensus 574 ~~~~R~~IL~~~~-s~~-~~~-~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 574 AVTRRKEILTTIF-SKN-LSD-ITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred chhHHHHHHHHHH-Hhh-hhh-hhhHHHHHHHHhcCCccchhHHHHH
Confidence 8887777776552 211 111 112223337888877 455555443
No 262
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.36 E-value=0.02 Score=57.59 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=26.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
+...+|+|.|++|.|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 456799999999999999999999887654
No 263
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0047 Score=55.86 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=26.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFD 136 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 136 (840)
..-|+|.||+|+||||+++.+.+..+... |.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 35789999999999999999999887653 54
No 264
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.037 Score=58.69 Aligned_cols=89 Identities=20% Similarity=0.289 Sum_probs=47.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFLCEESESGRARRLYARMKE 182 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 182 (840)
+.++|+++|++|+||||++..++.....+ .+ .+..++..... ...+-++...+.++.......+.......++.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 34799999999999999999998877533 22 34455543221 12222233344444443322222333334444432
Q ss_pred C-CcEEEEEcccc
Q 003192 183 E-KKILVILDDIW 194 (840)
Q Consensus 183 ~-k~~LlVlDdv~ 194 (840)
. +.=++++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 1 22466777653
No 265
>PHA02244 ATPase-like protein
Probab=96.35 E-value=0.025 Score=59.60 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 93 FKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 93 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+..++..+ .-|.|+|++|+|||++|+.++....
T Consensus 109 ~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 109 TADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34555555443 3467899999999999999998754
No 266
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.052 Score=59.60 Aligned_cols=129 Identities=21% Similarity=0.394 Sum_probs=76.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEK 184 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 184 (840)
..-|.+||++|+|||-||++|+|..... | ++|-.. +++.. .. +++ ...+..++++-+..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGP----ELlNk---YV-----GES-ErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGP----ELLNK---YV-----GES-ERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCH----HHHHH---Hh-----hhH-HHHHHHHHHHhhcCC
Confidence 4568899999999999999999998766 3 444332 11111 11 111 224566777777788
Q ss_pred cEEEEEccccccc-------C------ccccCCccCC--CCCCcEEEEeeCCcchhhccc----CccceEEccCCCHHHH
Q 003192 185 KILVILDDIWARL-------D------LETLGIPLGD--EHKGCKVLLTSRSRGVLSREM----DSEINFLVGILSQEES 245 (840)
Q Consensus 185 ~~LlVlDdv~~~~-------~------~~~l~~~l~~--~~~gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~ 245 (840)
+++|++|.++... . ...+...+.. ...|.-||-.|-.+++....+ .-....-++.=+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999986431 1 1122222221 334555665555444432111 1223556676778888
Q ss_pred HHHHHHHH
Q 003192 246 WSLFQKMV 253 (840)
Q Consensus 246 ~~lf~~~~ 253 (840)
.++++...
T Consensus 685 ~~ILK~~t 692 (802)
T KOG0733|consen 685 VAILKTIT 692 (802)
T ss_pred HHHHHHHh
Confidence 88888764
No 267
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.33 E-value=0.0097 Score=61.15 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHH
Q 003192 86 FDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEI 125 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v 125 (840)
+-+|..+..-.+++|.++++..|.+.|.+|.|||.||-+.
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHH
Confidence 5567777777889999999999999999999999888653
No 268
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.059 Score=57.00 Aligned_cols=147 Identities=15% Similarity=0.095 Sum_probs=69.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCC-C---Cc-----EEEEEeCCCccHHHHHHHHH-HHhCCCccccChhhHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKL-F---DE-----VVFVDVPQIPDIKKMQGQIA-DELGLFLCEESESGRAR 174 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F---~~-----~~wv~vs~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~ 174 (840)
...+.++|+.|+||||+|+.++...-.... - .| +.++..+..+|...+.-+=. +.-+. .......+.++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~-~~~~I~id~iR 99 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGR-KLLQIKIDAVR 99 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccc-cCCCcCHHHHH
Confidence 457889999999999999999887642110 0 00 00111111111110000000 00000 00001122333
Q ss_pred HHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCcc-hhhcccCccceEEccCCCHHHHHH
Q 003192 175 RLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSRG-VLSREMDSEINFLVGILSQEESWS 247 (840)
Q Consensus 175 ~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~ 247 (840)
.+.+.+. .+++-++|+|++...+ .-..+...+.....++.+|++|.+.. +.......-..+.+.+++.+++.+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~ 179 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHH
Confidence 3434333 1344455668776542 11222222222223465777777654 332223334578899999999988
Q ss_pred HHHHH
Q 003192 248 LFQKM 252 (840)
Q Consensus 248 lf~~~ 252 (840)
.+...
T Consensus 180 ~L~~~ 184 (325)
T PRK08699 180 YLRER 184 (325)
T ss_pred HHHhc
Confidence 88654
No 269
>PRK06921 hypothetical protein; Provisional
Probab=96.29 E-value=0.019 Score=58.85 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=44.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
....+.++|..|+|||+||..+++....+. -..++|++. .++...+...+ .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhc--
Confidence 356899999999999999999999876431 234667754 22333332221 11122334443
Q ss_pred CcEEEEEccc
Q 003192 184 KKILVILDDI 193 (840)
Q Consensus 184 k~~LlVlDdv 193 (840)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 3469999999
No 270
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.036 Score=62.55 Aligned_cols=95 Identities=16% Similarity=0.273 Sum_probs=66.2
Q ss_pred CcccccchHHHHHHHHHHhCC---------C---CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 82 GYQAFDSRISTFKDITNALSN---------P---SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~~---------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
.+.++-|-++.+.+|.+-+.- . +..-|-++|++|.|||-+|++|+....-. |++|-.+
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP--- 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP--- 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH---
Confidence 456677888888999888751 2 23478899999999999999999876643 4555432
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
+++.. .+ ++ ..+..+.+.++.+..++|+|.+|.+++.
T Consensus 740 -ELLNM---YV-----Gq-SE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 -ELLNM---YV-----GQ-SEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -HHHHH---Hh-----cc-hHHHHHHHHHHhhccCCeEEEecccccc
Confidence 11111 11 11 2345677788888789999999998754
No 271
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.24 E-value=0.025 Score=58.35 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 89 RISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 89 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
|.....++..........+|||.|..|+||||+|+.+.....
T Consensus 46 ~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 46 RQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334444443332234457999999999999999988766554
No 272
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.22 E-value=0.021 Score=59.70 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=51.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRARRLYAR 179 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 179 (840)
.+++-|+|++|+||||||.+++-..... -..++|++....+++. .+++++.+.+. ....+.+..+.+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4689999999999999999977655433 3468899887766653 34444443211 1112222333333
Q ss_pred H-HcCCcEEEEEcccc
Q 003192 180 M-KEEKKILVILDDIW 194 (840)
Q Consensus 180 l-~~~k~~LlVlDdv~ 194 (840)
+ ..+.--++|+|.|-
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 3 33456789999975
No 273
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.22 E-value=0.17 Score=50.27 Aligned_cols=213 Identities=14% Similarity=0.136 Sum_probs=115.0
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhcc----CCCCcEEEEEeCCC--------
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGH----KLFDEVVFVDVPQI-------- 146 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~-------- 146 (840)
.|.....+.++++....+......++.+=.-++|++|.||-|.+..+.++.-.. -.-+.+-|.+-|+.
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 344455577787777777776666678888999999999999998887765321 11223344433322
Q ss_pred --c-----------cHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcE-EEEEcccccc--cCccccCCccCCCC
Q 003192 147 --P-----------DIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKI-LVILDDIWAR--LDLETLGIPLGDEH 210 (840)
Q Consensus 147 --~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~ 210 (840)
. .-+-+..+|++..+...+.+. ...+.| ++|+-.+++. +.-.+++.-...-.
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 012233333333322211110 012233 4455555432 11122222111223
Q ss_pred CCcEEEEeeCCc-chhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 211 KGCKVLLTSRSR-GVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 211 ~gs~iliTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
..+|+|+.--+. .+....-..--.+++..-+++|....++..+-..+...+ ++++++|+++++|+-.-...+-..+
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 456666532211 111111112235788899999999998877544333322 7889999999999765444444444
Q ss_pred h--c---------cCHHHHHHHHHHhcC
Q 003192 290 R--E---------ENLFEWKNALLELKR 306 (840)
Q Consensus 290 ~--~---------~~~~~w~~~l~~l~~ 306 (840)
+ + ..+-+|+-++.+...
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHH
Confidence 4 1 135689888887543
No 274
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.19 E-value=0.072 Score=54.38 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=93.6
Q ss_pred cccccchHHHHHHHHHHhC----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCc-EEEEEeCCCcc-----HHHH
Q 003192 83 YQAFDSRISTFKDITNALS----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDE-VVFVDVPQIPD-----IKKM 152 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~-----~~~~ 152 (840)
...++|-.++..++-.++. .++..-|.|+|+.|.|||+|......+. +.|.. .+-|....... +..+
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHH
Confidence 3457787777777777775 3456678899999999999988777662 12332 33344443332 3334
Q ss_pred HHHHHHHhCCCcc-ccChhhHHHHHHHHHHc-----CCcEEEEEcccccccC-------ccccCCccCCCCCCcEEEEee
Q 003192 153 QGQIADELGLFLC-EESESGRARRLYARMKE-----EKKILVILDDIWARLD-------LETLGIPLGDEHKGCKVLLTS 219 (840)
Q Consensus 153 ~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~iliTt 219 (840)
.+++..++..... ..+-.+....+++.+.+ +-++++|+|.++-... +.-+...-....+=+.|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 4444444433221 12234456666766663 3458888888753311 111111112244556777899
Q ss_pred CCcchh--h----cccCccceEEccCCCHHHHHHHHHHHH
Q 003192 220 RSRGVL--S----REMDSEINFLVGILSQEESWSLFQKMV 253 (840)
Q Consensus 220 R~~~v~--~----~~~~~~~~~~l~~L~~~~~~~lf~~~~ 253 (840)
|-...- . .......++.++.+.-++-..+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 975332 1 112222355666677777777776653
No 275
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.18 E-value=0.032 Score=56.15 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKM 152 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 152 (840)
..++.|+|.+|+|||++|.+++...... -..++|++.. .++.+.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4699999999999999999998766533 3568999877 5555554
No 276
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.17 E-value=0.16 Score=54.29 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=32.7
Q ss_pred HHHHHHHHhCC---CCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 92 TFKDITNALSN---PSVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 92 ~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
-.+.+.+.+.+ +...+|+|.|.=|+||||+.+.+.+..+..
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34556666653 457799999999999999999999988765
No 277
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.15 E-value=0.027 Score=59.15 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=41.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc----CCCCcEEEEEeCCCccHHHHHHHHHHHhCCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGH----KLFDEVVFVDVPQIPDIKKMQGQIADELGLF 163 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 163 (840)
..++-|+|++|+|||+|+.+++-..... ..=..++||+....++++++. +++++++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 4688999999999999998876432211 111368999999888888875 466766554
No 278
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.15 E-value=0.026 Score=56.23 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+|||.|.+|+||||+|+.+......
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999988753
No 279
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.034 Score=54.37 Aligned_cols=92 Identities=16% Similarity=0.299 Sum_probs=57.0
Q ss_pred cccccchHHHHHHHHHHhCC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALSN-------------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+.++-|-.+.++++.+..+- +..+-|.++|++|.|||-.|+.|+|+-... | +.|-. .
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvig---s 245 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIG---S 245 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----Eeehh---H
Confidence 44566777888888776541 245678899999999999999999875543 3 22211 1
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccc
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIW 194 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 194 (840)
+-+++-+-+ .......+++-.+.+|-+++++|.++
T Consensus 246 elvqkyvge----------garmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 246 ELVQKYVGE----------GARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHhhh----------hHHHHHHHHHHhcccceEEEEeeccc
Confidence 112211110 11233445555555778999999875
No 280
>PRK06547 hypothetical protein; Provisional
Probab=96.14 E-value=0.0079 Score=57.18 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=28.9
Q ss_pred HHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 95 DITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 95 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+...+......+|+|.|++|+||||+|+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445566778999999999999999999998754
No 281
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.12 E-value=0.0078 Score=66.57 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=42.1
Q ss_pred cccccchHHHHHHHHHHhC------CCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 83 YQAFDSRISTFKDITNALS------NPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
..+++|.++.++++++.|. +...+++.++|++|+||||||+.+++-.+.
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4468899999999999882 456689999999999999999999987764
No 282
>PRK04296 thymidine kinase; Provisional
Probab=96.11 E-value=0.0063 Score=59.20 Aligned_cols=111 Identities=17% Similarity=0.118 Sum_probs=60.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc---cChhhHHHHHHHHHHc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE---ESESGRARRLYARMKE 182 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 182 (840)
.++.|+|..|.||||+|..++...... -..++.+. ..++.+.....++.+++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999998877544 22333332 2122222234455566543321 111122222222 22
Q ss_pred CCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCCcch
Q 003192 183 EKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRSRGV 224 (840)
Q Consensus 183 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~~~v 224 (840)
++.-+||+|.+.-. ++..++...+ ...|..|++|.++.+.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 34458999998432 1122222221 3457789999888543
No 283
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.11 E-value=0.037 Score=55.58 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=32.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 156 (840)
..++.|.|.+|+||||+|.++......+. ..+++++. ..+..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeC--CCCHHHHHHHH
Confidence 46999999999999999877665543221 34566663 33456666665
No 284
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.027 Score=62.20 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGLFLCEESESGRARRLYARMKE 182 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 182 (840)
...+|+|+|++|+||||++.+++..+..+.....+..++... .....+-++...+.++...............++.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~- 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR- 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-
Confidence 357999999999999999999887765432223455554422 111222233333334433332222333444444443
Q ss_pred CCcEEEEEcccc
Q 003192 183 EKKILVILDDIW 194 (840)
Q Consensus 183 ~k~~LlVlDdv~ 194 (840)
+.=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 24578888763
No 285
>PRK09354 recA recombinase A; Provisional
Probab=96.10 E-value=0.027 Score=59.33 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRARRLYAR 179 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 179 (840)
.+++-|+|++|+||||||.++....... =..++||+....+++. .+++++.+... ....+.+..+.+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999987655433 3468899887777653 34555543211 1112222233333
Q ss_pred H-HcCCcEEEEEcccc
Q 003192 180 M-KEEKKILVILDDIW 194 (840)
Q Consensus 180 l-~~~k~~LlVlDdv~ 194 (840)
+ ..+..-++|+|.|-
T Consensus 133 li~s~~~~lIVIDSva 148 (349)
T PRK09354 133 LVRSGAVDLIVVDSVA 148 (349)
T ss_pred HhhcCCCCEEEEeChh
Confidence 3 34556789999985
No 286
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.10 E-value=0.024 Score=58.08 Aligned_cols=121 Identities=21% Similarity=0.202 Sum_probs=67.3
Q ss_pred HHHHHHhC-CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEE---EeCCCccHHHHHHHHHHHhCCC------
Q 003192 94 KDITNALS-NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFV---DVPQIPDIKKMQGQIADELGLF------ 163 (840)
Q Consensus 94 ~~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~~~~~i~~~l~~~------ 163 (840)
+.++..+. ..+..-++|+|+.|.|||||++.+....... ...+++ .+....+.. ++......-
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVG 171 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHH----HHHHHhccccccccc
Confidence 34444443 3445789999999999999999998776532 233443 222111122 232222110
Q ss_pred --ccccChhhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcch
Q 003192 164 --LCEESESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGV 224 (840)
Q Consensus 164 --~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v 224 (840)
.+..+.......+...+....+-++++|.+-..+.+..+...+ ..|..||+||.+..+
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 0101111123334444443467899999987665555554443 247789999987655
No 287
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.018 Score=66.36 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=61.3
Q ss_pred cccchHHHHHHHHHHhC---------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 85 AFDSRISTFKDITNALS---------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.++|.++.++.+.+.+. +.+..+...+|+.|||||-||+.++...-..+ +..+-+++|.-... +.
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~Ek----Hs 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEK----HS 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHH----HH
Confidence 37899999999988875 12345777899999999999999998763221 34555555442221 12
Q ss_pred HHHHhCCCcc--ccChhhHHHHHHHHHHcCCcE-EEEEcccccc
Q 003192 156 IADELGLFLC--EESESGRARRLYARMKEEKKI-LVILDDIWAR 196 (840)
Q Consensus 156 i~~~l~~~~~--~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~ 196 (840)
+.+-+|.... +-.+. -.+-+..+ .++| ++.||+|...
T Consensus 566 VSrLIGaPPGYVGyeeG---G~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 566 VSRLIGAPPGYVGYEEG---GQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHhCCCCCCceeccc---cchhHhhh-cCCCeEEEechhhhc
Confidence 2233333221 11111 22333444 4556 8888999754
No 288
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.09 E-value=0.18 Score=52.44 Aligned_cols=167 Identities=13% Similarity=0.047 Sum_probs=92.2
Q ss_pred HHHHHHHhCCCC-ccEEEEEcCCCCcHHHHHHHHHHHh--------hccCCCCcEEEEEe-CCCccHHHHHHHHHHHhCC
Q 003192 93 FKDITNALSNPS-VDMIGICGMGGIGKTMLVKEIARQV--------KGHKLFDEVVFVDV-PQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 93 ~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~ 162 (840)
++.+...+..+. ..+.-++|..|.||+++|..+.+.. ....|-+...++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344555555544 4577799999999999999999886 22222223344432 2223333332 33333322
Q ss_pred CccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCC-cchhhcccCccceEEccC
Q 003192 163 FLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRS-RGVLSREMDSEINFLVGI 239 (840)
Q Consensus 163 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~-~~v~~~~~~~~~~~~l~~ 239 (840)
... ..+.+-++|+|++.... ...++...+..-..++.+|++|.+ ..+..........+++.+
T Consensus 84 ~~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 84 SSF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred CCc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 110 11466788889886543 233444444444456666665544 344333234456899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 240 LSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 240 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
++.++..+.+... + ..++.+..++...+|.-.|+..
T Consensus 149 l~~~~l~~~l~~~---~------~~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 149 PDQQKILAKLLSK---N------KEKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCHHHHHHHHHHc---C------CChhHHHHHHHHcCCHHHHHHH
Confidence 9999888777653 1 1123455666666663244443
No 289
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.02 E-value=0.055 Score=63.17 Aligned_cols=128 Identities=20% Similarity=0.313 Sum_probs=69.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
+-|.++|++|+|||++|+.+++..... | +.++.+. +.. +. .+ . .......+.+......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~-~~--~g-----~-~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVE-MF--VG-----V-GASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHH-hh--hc-----c-cHHHHHHHHHHHHhcCC
Confidence 458999999999999999998876543 2 2222211 110 00 00 0 11123333444444567
Q ss_pred EEEEEcccccccC----------------ccccCCccCC--CCCCcEEEEeeCCcchhhccc----CccceEEccCCCHH
Q 003192 186 ILVILDDIWARLD----------------LETLGIPLGD--EHKGCKVLLTSRSRGVLSREM----DSEINFLVGILSQE 243 (840)
Q Consensus 186 ~LlVlDdv~~~~~----------------~~~l~~~l~~--~~~gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~ 243 (840)
++|++|+++.... +..+...+.. ...+..||.||...+...... .-...+.++.-+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 9999999865310 0111111111 123445555776655432111 22356778888888
Q ss_pred HHHHHHHHHH
Q 003192 244 ESWSLFQKMV 253 (840)
Q Consensus 244 ~~~~lf~~~~ 253 (840)
+-.++++.+.
T Consensus 326 ~R~~Il~~~~ 335 (644)
T PRK10733 326 GREQILKVHM 335 (644)
T ss_pred HHHHHHHHHh
Confidence 8888887764
No 290
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.014 Score=55.68 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
.|.|.|.+|.||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999998543
No 291
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.014 Score=55.77 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=35.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIAD 158 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 158 (840)
..+|+|-||=|+||||||+.++++.... +++-.+..++=++.+..++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHHH
Confidence 4789999999999999999999998743 333345555445555554443
No 292
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.023 Score=57.34 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=25.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
-++|-++|++|.|||+|.+.++++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4799999999999999999999998654
No 293
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.91 E-value=0.42 Score=53.88 Aligned_cols=200 Identities=16% Similarity=0.162 Sum_probs=110.9
Q ss_pred CcccccchHHHHHHHHHHhC----C-CCccEEEEEcCCCCcHHHHHHHHHHHhh------ccCCCCcEEEEEeCCCccHH
Q 003192 82 GYQAFDSRISTFKDITNALS----N-PSVDMIGICGMGGIGKTMLVKEIARQVK------GHKLFDEVVFVDVPQIPDIK 150 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~------~~~~F~~~~wv~vs~~~~~~ 150 (840)
-+..+-+|+.+..+|-..+. + +....+-|.|-+|+|||..+..|.+... .-..|+ .+.|+.-.-..+.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 44556789999999888775 3 3445899999999999999999988543 222453 3456666666789
Q ss_pred HHHHHHHHHhCCCccccChhhHHHHHHHHHH----cCCcEEEEEcccccccC--ccccCCccCC-CCCCcEEEEeeCCc-
Q 003192 151 KMQGQIADELGLFLCEESESGRARRLYARMK----EEKKILVILDDIWARLD--LETLGIPLGD-EHKGCKVLLTSRSR- 222 (840)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs~iliTtR~~- 222 (840)
++...|..++..... .....+..+..++. ..+.+++++|+++..-. -+-+-..+.| ..++||++|.+=..
T Consensus 473 ~~Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 999999998865432 11222333333333 24678899998754311 0001111222 34677766643221
Q ss_pred -chhhcccC-------ccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 003192 223 -GVLSREMD-------SEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVT 284 (840)
Q Consensus 223 -~v~~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 284 (840)
+.....+. ....+...|.+.++-.++...++.+-+.......+=++++|+.-.|-.-.|+.+
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldi 620 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDI 620 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHH
Confidence 11111011 112456677777776666665532222222233333444444444444444443
No 294
>PRK07667 uridine kinase; Provisional
Probab=95.90 E-value=0.012 Score=57.53 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=29.3
Q ss_pred HHHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 94 KDITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 94 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+.+.+.+. .+...+|+|-|.+|.||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34445444 344579999999999999999999988754
No 295
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.90 E-value=0.019 Score=55.59 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988763
No 296
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.055 Score=57.26 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFLCEESESGRARRLYARMKE 182 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 182 (840)
+.++|.++|+.|+||||++..++.....+. ..+.+++..... ...+-++..++.++.......+........+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 357999999999999999999987764432 346677664332 23334445555555443322233333444444431
Q ss_pred -CCcEEEEEcccc
Q 003192 183 -EKKILVILDDIW 194 (840)
Q Consensus 183 -~k~~LlVlDdv~ 194 (840)
+..=++++|-.-
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 233577778763
No 297
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.88 E-value=0.0069 Score=54.70 Aligned_cols=22 Identities=50% Similarity=0.868 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 003192 108 IGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~ 129 (840)
|+|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 298
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.87 E-value=0.037 Score=55.35 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=32.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
..++.|.|.+|+||||+|.+++.....+ =..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 4789999999999999999988776433 23578887655443
No 299
>PRK05439 pantothenate kinase; Provisional
Probab=95.87 E-value=0.056 Score=56.24 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
....+|||.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456999999999999999999888654
No 300
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.87 E-value=0.051 Score=57.53 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=42.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh-c---cCCCCcEEEEEeCCCccHHHHHHHHHHHhCCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK-G---HKLFDEVVFVDVPQIPDIKKMQGQIADELGLF 163 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~---~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 163 (840)
..++-|+|.+|+|||+|+.+++-... . ...-..++|++....|.++++. ++++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 46888999999999999998753221 1 1112468999999999988875 466666654
No 301
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.85 E-value=0.0076 Score=58.97 Aligned_cols=26 Identities=42% Similarity=0.684 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
||+|.|.+|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999988754
No 302
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.84 E-value=0.013 Score=64.04 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=40.9
Q ss_pred cccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC
Q 003192 85 AFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFD 136 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 136 (840)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 4889999999999888765 4578999999999999999998765443443
No 303
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.84 E-value=0.034 Score=59.88 Aligned_cols=85 Identities=27% Similarity=0.315 Sum_probs=52.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCcccc--ChhhHHHHHHHHHHc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEE--SESGRARRLYARMKE 182 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 182 (840)
..++.|.|.+|+|||||+.+++...... -..++|++.... ...+. .-+++++...... ........+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4699999999999999999998776543 245778865433 33332 2234555432211 011224455555555
Q ss_pred CCcEEEEEcccc
Q 003192 183 EKKILVILDDIW 194 (840)
Q Consensus 183 ~k~~LlVlDdv~ 194 (840)
.+.-++|+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 567789999874
No 304
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.83 E-value=0.038 Score=52.93 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
++.++|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999999877644
No 305
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.04 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+.|.|++|+|||||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999876
No 306
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.032 Score=59.98 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=44.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
..+|.++|++|+||||+|.+++........+ .+..++... .....+.++..++.++...... .....+.+.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 3589999999999999999998765332222 233333222 1122333344444444432211 1233444444332
Q ss_pred CcEEEEEcc
Q 003192 184 KKILVILDD 192 (840)
Q Consensus 184 k~~LlVlDd 192 (840)
..=++|+|-
T Consensus 299 ~~D~VLIDT 307 (432)
T PRK12724 299 GSELILIDT 307 (432)
T ss_pred CCCEEEEeC
Confidence 334588884
No 307
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.81 E-value=0.0086 Score=47.16 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+|+|.|.+|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 308
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.80 E-value=0.056 Score=57.31 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=41.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCcEEEEEeCCCccHHHHHHHHHHHhCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK----LFDEVVFVDVPQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 162 (840)
..++-|+|.+|+||||++.+++-...... .=..++||+....++.+++. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 46889999999999999999876643210 01268999998888887764 44555543
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.77 E-value=0.071 Score=53.98 Aligned_cols=49 Identities=10% Similarity=0.214 Sum_probs=34.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 156 (840)
...++.|.|.+|+|||++|.++......+ -..++|++... +++++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 34799999999999999999876554322 34688887655 455555543
No 310
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.75 E-value=0.057 Score=57.37 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=41.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCcEEEEEeCCCccHHHHHHHHHHHhCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKL----FDEVVFVDVPQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 162 (840)
..++-|+|++|+|||++|.+++-....... =..++||+....++++++. ++++.++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 578999999999999999998765432111 1368999998888887765 44455543
No 311
>PRK14974 cell division protein FtsY; Provisional
Probab=95.71 E-value=0.11 Score=55.02 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=36.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGLF 163 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 163 (840)
..+|.++|++|+||||.+..++..+... .+ .++.++... .....+-++..++.++..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCc
Confidence 5799999999999999999988877643 23 234443221 112233345556666654
No 312
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.71 E-value=0.66 Score=48.87 Aligned_cols=49 Identities=22% Similarity=0.166 Sum_probs=35.5
Q ss_pred eEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 234 NFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 234 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
++++++++.+|+..++..+...+-.......+...+++.--.+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6899999999999999988654433222444556677777779999644
No 313
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.69 E-value=0.0055 Score=63.01 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=50.4
Q ss_pred HHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHH
Q 003192 94 KDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRA 173 (840)
Q Consensus 94 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 173 (840)
..+++.+...+ +-|-++|++|+|||++++.......... | .+.-++.+...+...+++.+-..+.......-..
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP--- 96 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP--- 96 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE---
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC---
Confidence 44555555443 4568999999999999999886544331 1 2445566666666555543322222111000000
Q ss_pred HHHHHHHHcCCcEEEEEccccc
Q 003192 174 RRLYARMKEEKKILVILDDIWA 195 (840)
Q Consensus 174 ~~l~~~l~~~k~~LlVlDdv~~ 195 (840)
..+|+.++++||+.-
T Consensus 97 -------~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 97 -------PGGKKLVLFIDDLNM 111 (272)
T ss_dssp -------ESSSEEEEEEETTT-
T ss_pred -------CCCcEEEEEecccCC
Confidence 126889999999853
No 314
>PTZ00301 uridine kinase; Provisional
Probab=95.69 E-value=0.01 Score=58.32 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|||.|.+|.||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 315
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.65 E-value=0.036 Score=54.54 Aligned_cols=96 Identities=25% Similarity=0.364 Sum_probs=57.8
Q ss_pred HHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC-ccHHHHHHHHHHHhCCC-------ccc
Q 003192 96 ITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI-PDIKKMQGQIADELGLF-------LCE 166 (840)
Q Consensus 96 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~ 166 (840)
.++.+.. .....++|.|.+|+|||+|+..+.+... -+.++++-+.+. .++.++.+++...-... ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 4455541 1236899999999999999999998875 335578877765 35666666664331111 011
Q ss_pred cChhh------HHHHHHHHHH-cCCcEEEEEccccc
Q 003192 167 ESESG------RARRLYARMK-EEKKILVILDDIWA 195 (840)
Q Consensus 167 ~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 195 (840)
++... ....+.+++. +++++|+++||+..
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHH
Confidence 11111 1122233333 48999999999854
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.64 E-value=0.018 Score=57.07 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHHHHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHH
Q 003192 92 TFKDITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIK 150 (840)
Q Consensus 92 ~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 150 (840)
...++++.+. .++..+|||.|+||+|||||...+...+..+.+=-.++=|+-|..++--
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGG 74 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGG 74 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCC
Confidence 3445555554 3467899999999999999999999888765333344555555555433
No 317
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.64 E-value=0.052 Score=57.22 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=39.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc---cC-CCCcEEEEEeCCCccHHHHHHHHHHHhCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKG---HK-LFDEVVFVDVPQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 162 (840)
..++.|+|.+|+|||||+..++..... .. .-..++|++....+..+++ .++++.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 579999999999999999988753221 10 1135799988887777764 445555544
No 318
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.63 E-value=0.052 Score=54.26 Aligned_cols=119 Identities=22% Similarity=0.226 Sum_probs=65.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeC---C--CccHHHHHHHHHHHhCCCc------ccc-Chhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVP---Q--IPDIKKMQGQIADELGLFL------CEE-SESG 171 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs---~--~~~~~~~~~~i~~~l~~~~------~~~-~~~~ 171 (840)
+..++||+|.+|+||||+++.+..-.+.. . ..+++.-. . .....+-..++++..+... +.+ +...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--S-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--C-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 35789999999999999999998866644 3 33333211 1 1123334455566655432 111 1222
Q ss_pred HHHHHHHHHHcCCcEEEEEcccccccCc------cccCCccCCCCCCcEEEEeeCCcchhh
Q 003192 172 RARRLYARMKEEKKILVILDDIWARLDL------ETLGIPLGDEHKGCKVLLTSRSRGVLS 226 (840)
Q Consensus 172 ~~~~l~~~l~~~k~~LlVlDdv~~~~~~------~~l~~~l~~~~~gs~iliTtR~~~v~~ 226 (840)
.+...+.+...-++-++|.|..-+..+. -.+...+ ....|-..++.|.+-.++.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhh
Confidence 2333333333357889999986544221 1111111 1233556788888776653
No 319
>PRK08233 hypothetical protein; Provisional
Probab=95.62 E-value=0.0099 Score=57.53 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 320
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.012 Score=57.11 Aligned_cols=29 Identities=41% Similarity=0.585 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
.+.+|||.|.+|.||||+|+.+.+.+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45799999999999999999999988754
No 321
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.62 E-value=0.012 Score=58.51 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+..+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 322
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.11 Score=54.05 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
=+-|..+|++|.|||-||++|+......
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 3678899999999999999999887644
No 323
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.60 E-value=0.011 Score=58.43 Aligned_cols=28 Identities=39% Similarity=0.561 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+...+|+|+|++|+||||||+.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998765
No 324
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.59 E-value=0.048 Score=59.94 Aligned_cols=86 Identities=12% Similarity=0.186 Sum_probs=47.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh-ccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK-GHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFLCEESESGRARRLYARMKE 182 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 182 (840)
.++|.++|++|+||||++..++.... ... -..+..|+..... ...+-++...+.++...............++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-
Confidence 46899999999999999999887765 221 2346666654321 1122233334444443322222222333333333
Q ss_pred CCcEEEEEccc
Q 003192 183 EKKILVILDDI 193 (840)
Q Consensus 183 ~k~~LlVlDdv 193 (840)
..=++++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 2457888865
No 325
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.58 E-value=0.063 Score=56.96 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=42.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc----CCCCcEEEEEeCCCccHHHHHHHHHHHhCCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGH----KLFDEVVFVDVPQIPDIKKMQGQIADELGLF 163 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 163 (840)
..++-|+|.+|+|||++|..++-..... ..-..++|++....+.++++ .+|++.++.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 4688999999999999998877533211 01136899999999988887 4667766543
No 326
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.57 E-value=0.15 Score=44.86 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHhC----C---CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 86 FDSRISTFKDITNALS----N---PSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
++|..-..+.+++++. + ++.-|++.+|.+|+|||.+|+.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5566655555555553 2 244588999999999999999998874
No 327
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.16 Score=57.79 Aligned_cols=130 Identities=19% Similarity=0.270 Sum_probs=72.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
..+.|-++|++|.|||.||+.+++..... | +.+... ++ .. .+.+++ ...+..+++.-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--f-----i~v~~~----~l----~s----k~vGes-ek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--F-----ISVKGS----EL----LS----KWVGES-EKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--E-----EEeeCH----HH----hc----cccchH-HHHHHHHHHHHHcC
Confidence 45689999999999999999999965543 3 222221 11 10 011111 12334444444456
Q ss_pred CcEEEEEcccccccCcc-------------ccCCccCC--CCCCcEEEEeeCCcchhhccc----CccceEEccCCCHHH
Q 003192 184 KKILVILDDIWARLDLE-------------TLGIPLGD--EHKGCKVLLTSRSRGVLSREM----DSEINFLVGILSQEE 244 (840)
Q Consensus 184 k~~LlVlDdv~~~~~~~-------------~l~~~l~~--~~~gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~ 244 (840)
.++.|++|+++....+. .+...+.. ...+..||-+|-........+ .-...+.+.+-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 78999999986542211 11112211 222333444444443322111 224578888889999
Q ss_pred HHHHHHHHH
Q 003192 245 SWSLFQKMV 253 (840)
Q Consensus 245 ~~~lf~~~~ 253 (840)
..+.|+.+.
T Consensus 415 r~~i~~~~~ 423 (494)
T COG0464 415 RLEIFKIHL 423 (494)
T ss_pred HHHHHHHHh
Confidence 999999884
No 328
>PRK06217 hypothetical protein; Validated
Probab=95.56 E-value=0.048 Score=52.78 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCC--CcEEEE
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLF--DEVVFV 141 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv 141 (840)
.|.|.|.+|.||||+|+.+.+..... +| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 58999999999999999999887532 33 445553
No 329
>PTZ00035 Rad51 protein; Provisional
Probab=95.54 E-value=0.082 Score=56.25 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=39.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc---cC-CCCcEEEEEeCCCccHHHHHHHHHHHhCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKG---HK-LFDEVVFVDVPQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 162 (840)
..++.|+|.+|+|||||+..++-.... .. .=..++|++....++++++ .++++.++.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 468999999999999999988654331 00 1234679988777777774 455666554
No 330
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.086 Score=53.84 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=54.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHH-hCCCc-cccChhhHHHHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADE-LGLFL-CEESESGRARRLYARMK 181 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~-~~~~~~~~~~~l~~~l~ 181 (840)
..+++=|+|+.|.||||+|.+++-..... -..++|++.-..++++.+. ++... +..-. ......+.+..+.+.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 34799999999999999999876544333 3378999999999988764 34443 22111 11122223333333333
Q ss_pred c---CCcEEEEEcccc
Q 003192 182 E---EKKILVILDDIW 194 (840)
Q Consensus 182 ~---~k~~LlVlDdv~ 194 (840)
. .+--|+|+|.|-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 1 124588888774
No 331
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.54 E-value=0.024 Score=52.37 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=27.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEE
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFV 141 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 141 (840)
..+|.|.|.+|.||||||+.+.+.+... -..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEe
Confidence 3589999999999999999999998765 2345555
No 332
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.53 E-value=0.057 Score=55.32 Aligned_cols=96 Identities=9% Similarity=0.129 Sum_probs=54.0
Q ss_pred HHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-------
Q 003192 94 KDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE------- 166 (840)
Q Consensus 94 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------- 166 (840)
++..+++...++.+|.|+|.+|.|||||+..+.+..... .. ++.+ .....+..+ .+.++..+.....
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~C 166 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--VP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGC 166 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--CC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCC
Confidence 334555556778999999999999999999999987654 22 2222 122122222 1223333332111
Q ss_pred cChhhHHHHHHHHHHcCCcEEEEEccccc
Q 003192 167 ESESGRARRLYARMKEEKKILVILDDIWA 195 (840)
Q Consensus 167 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 195 (840)
..+.......+..+.....=++|+++|-+
T Consensus 167 hl~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 167 HLDAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cCcHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 11223344445555544446778888854
No 333
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.51 E-value=0.074 Score=58.34 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=37.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCCC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGLF 163 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 163 (840)
...+|.++|.+|+||||.|..++..+..+ .+ .+..|+... .....+-++.+.++++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 35799999999999999999999887644 22 344444322 122344455566666554
No 334
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.077 Score=55.89 Aligned_cols=85 Identities=27% Similarity=0.375 Sum_probs=57.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCcccc--ChhhHHHHHHHHHHc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEE--SESGRARRLYARMKE 182 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 182 (840)
..+|.|-|-+|+|||||.-++..+...+. .+++|+--+ +...+ +--+++++...... -.....+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 36899999999999999999999987663 577775433 33332 23356666433221 122345666677777
Q ss_pred CCcEEEEEccccc
Q 003192 183 EKKILVILDDIWA 195 (840)
Q Consensus 183 ~k~~LlVlDdv~~ 195 (840)
.++-++|+|-+..
T Consensus 167 ~~p~lvVIDSIQT 179 (456)
T COG1066 167 EKPDLVVIDSIQT 179 (456)
T ss_pred cCCCEEEEeccce
Confidence 7899999999743
No 335
>PRK03839 putative kinase; Provisional
Probab=95.50 E-value=0.012 Score=56.76 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999875
No 336
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.49 E-value=0.031 Score=53.84 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+++|+|..|.|||||++.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999987643
No 337
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.022 Score=51.70 Aligned_cols=45 Identities=31% Similarity=0.491 Sum_probs=35.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFL 164 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 164 (840)
+|.|-|++|.||||+|+.++++..-. .| +.-.++++|++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 78999999999999999999987643 11 33467788888888764
No 338
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.48 E-value=0.071 Score=54.04 Aligned_cols=93 Identities=22% Similarity=0.156 Sum_probs=59.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc--cCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccChh---
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKG--HKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFL-------CEESES--- 170 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~--- 170 (840)
....++|.|-+|+|||+|+..+.++... +.+-+.++++-+.+.. ++.++..++.+.-.... ..++..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999998887641 1224678888887654 56666666655322111 011111
Q ss_pred ---hHHHHHHHHHHc--CCcEEEEEcccccc
Q 003192 171 ---GRARRLYARMKE--EKKILVILDDIWAR 196 (840)
Q Consensus 171 ---~~~~~l~~~l~~--~k~~LlVlDdv~~~ 196 (840)
..+..+.+++.. ++++|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 122344555542 68999999998643
No 339
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.1 Score=56.78 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=46.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGLFLCEESESGRARRLYARMKE 182 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 182 (840)
...+|+++|+.|+||||++.+++.........+.+..+.... .....+-+....+.++...............+..+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~- 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR- 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc-
Confidence 347999999999999999998887643222223344443322 112233344455555554432222222333333333
Q ss_pred CCcEEEEEccc
Q 003192 183 EKKILVILDDI 193 (840)
Q Consensus 183 ~k~~LlVlDdv 193 (840)
+ .-++++|-.
T Consensus 269 ~-~d~VLIDTa 278 (420)
T PRK14721 269 G-KHMVLIDTV 278 (420)
T ss_pred C-CCEEEecCC
Confidence 2 345666764
No 340
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.44 E-value=0.0042 Score=36.23 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=10.3
Q ss_pred CCEEeccCCCCCCCcHHHh
Q 003192 534 LEILSLSSSDIEHLPREIG 552 (840)
Q Consensus 534 L~~L~L~~~~l~~lp~~i~ 552 (840)
|++||+++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555443
No 341
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.43 E-value=0.056 Score=52.49 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=30.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 108 IGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
+.|.|++|+|||++|.++....... =..++|++... +.+++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 6789999999999999987765422 13477887654 34444443
No 342
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.014 Score=51.92 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=29.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
.+-|.|.|.+|+||||+|.+++....- -|+++|.-...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~vkE 44 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLVKE 44 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHHhh
Confidence 467889999999999999999966543 36777654433
No 343
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.43 E-value=0.029 Score=56.47 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=44.6
Q ss_pred HHHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHH
Q 003192 94 KDITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 94 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 154 (840)
.+++..+. .+...+|||.|.||+|||||.-.+...+..+.+=-.++=|+-|.+++--.++.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 34555554 45567999999999999999999999887766545566666677775544443
No 344
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.42 E-value=0.092 Score=53.13 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=34.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 156 (840)
...++.|+|.+|+|||++|.++......+ =..++|++.... ++++.+++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH
Confidence 35799999999999999999986543222 235788888654 45555543
No 345
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.42 E-value=0.06 Score=51.91 Aligned_cols=117 Identities=23% Similarity=0.278 Sum_probs=60.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEE---EeCCCccHHHHHH------HHHHHhCCCcc------ccC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFV---DVPQIPDIKKMQG------QIADELGLFLC------EES 168 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~~~~------~i~~~l~~~~~------~~~ 168 (840)
+..+++|+|..|.|||||++.++..... ....+++ ++.. .+...... ++++.++.... .-+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3468999999999999999999875432 3444444 2221 12222221 13444443211 111
Q ss_pred hhh-HHHHHHHHHHcCCcEEEEEcccccccC---ccccCCccCCC-CC-CcEEEEeeCCcchh
Q 003192 169 ESG-RARRLYARMKEEKKILVILDDIWARLD---LETLGIPLGDE-HK-GCKVLLTSRSRGVL 225 (840)
Q Consensus 169 ~~~-~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l~~~l~~~-~~-gs~iliTtR~~~v~ 225 (840)
..+ ....+...+. ..+-++++|+.-..-+ .+.+...+... .. |..||++|.+....
T Consensus 100 ~G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 111 2223334444 4678999998754322 12222222111 12 56788888876543
No 346
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.42 E-value=0.012 Score=51.14 Aligned_cols=25 Identities=48% Similarity=0.689 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 108 IGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
|.|+|.+|+|||++|+.++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5689999999999999998877643
No 347
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.41 E-value=0.055 Score=51.90 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
...+|+|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999998754
No 348
>PRK06762 hypothetical protein; Provisional
Probab=95.40 E-value=0.015 Score=55.39 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.39 E-value=0.098 Score=53.89 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=29.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeC
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVP 144 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 144 (840)
.+.++|.++|++|+||||.+..++..+... . ..+.+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g-~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ-G-KSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-C-CEEEEEeCC
Confidence 346799999999999999999998877543 1 245566543
No 350
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.39 E-value=0.014 Score=53.93 Aligned_cols=24 Identities=38% Similarity=0.729 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987654
No 351
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.37 E-value=0.015 Score=56.62 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
++++|+|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 352
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.36 E-value=0.096 Score=50.92 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=63.7
Q ss_pred cccchHHHHHHHHHH----hCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHh
Q 003192 85 AFDSRISTFKDITNA----LSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADEL 160 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 160 (840)
.++|-+...+.+++- +..-...-|-+||--|+|||+|++.+.+.+..+ .-. -|-|.+.
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~-------------- 122 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE-------------- 122 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH--------------
Confidence 356666555555543 333445678899999999999999999998765 222 2333321
Q ss_pred CCCccccChhhHHHHHHHHHH-cCCcEEEEEcccccc---cCccccCCccCC---CCCCcEEEEeeCCc
Q 003192 161 GLFLCEESESGRARRLYARMK-EEKKILVILDDIWAR---LDLETLGIPLGD---EHKGCKVLLTSRSR 222 (840)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~---~~~~~l~~~l~~---~~~gs~iliTtR~~ 222 (840)
+......+.+.|+ ...||+|..||..=+ ..+..+...+.. +.+...++..|.++
T Consensus 123 --------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 --------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred --------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1112233344443 257899999998533 334444444432 22333444444443
No 353
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.36 E-value=0.089 Score=58.17 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=37.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGLF 163 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 163 (840)
..||+++|+.|+||||.+.+++.....+..-..+..++... .....+-++...+.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 47999999999999999999998765432222345554332 123334444455555544
No 354
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.079 Score=57.15 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=50.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC--CCCcEEEEEeCCC-ccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK--LFDEVVFVDVPQI-PDIKKMQGQIADELGLFLCEESESGRARRLYARMK 181 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 181 (840)
..+|.++|+.|+||||.+.+++..+.... +=..+..+++... ....+-++..++.++..................+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 56999999999999999999988765321 1123555555432 1222335555666665443322222333333333
Q ss_pred cCCcEEEEEcccc
Q 003192 182 EEKKILVILDDIW 194 (840)
Q Consensus 182 ~~k~~LlVlDdv~ 194 (840)
.+.-++++|.+-
T Consensus 253 -~~~DlVLIDTaG 264 (388)
T PRK12723 253 -KDFDLVLVDTIG 264 (388)
T ss_pred -CCCCEEEEcCCC
Confidence 234688888874
No 355
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.12 Score=60.23 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=49.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
..+|+++|+.|+||||.+.+++..+.....-..+..++... .....+-++...+.++.......+...+...++.+. +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-D 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-C
Confidence 46999999999999999999887764322123455554332 112334455555666654432222333344444443 2
Q ss_pred CcEEEEEcccc
Q 003192 184 KKILVILDDIW 194 (840)
Q Consensus 184 k~~LlVlDdv~ 194 (840)
+ =++++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 2 367777654
No 356
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.34 E-value=0.035 Score=63.83 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=60.2
Q ss_pred CCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHh
Q 003192 81 KGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADEL 160 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 160 (840)
.....+.|+++.++.+...+... +.+.++|.+|+||||+|+.+.+.... .+++..+|..- ...+...+.+.+..++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 44566889999988888877655 47899999999999999999987643 34677788644 4446777888888777
Q ss_pred CCC
Q 003192 161 GLF 163 (840)
Q Consensus 161 ~~~ 163 (840)
+..
T Consensus 104 G~~ 106 (637)
T PRK13765 104 GKQ 106 (637)
T ss_pred CHH
Confidence 654
No 357
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.33 E-value=0.05 Score=58.32 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=46.9
Q ss_pred cccchHHHHHHHHHHhCCC--------------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCC---CcEEEEEeC-CC
Q 003192 85 AFDSRISTFKDITNALSNP--------------SVDMIGICGMGGIGKTMLVKEIARQVKGHKLF---DEVVFVDVP-QI 146 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~~ 146 (840)
.++|+++.++.+.-++... ..+-|.++|++|+|||++|+.++...... | +..-|...+ ..
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~--fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEeecceeecCCccc
Confidence 3678877777765554321 23678999999999999999999987543 3 222222221 12
Q ss_pred ccHHHHHHHHHHHh
Q 003192 147 PDIKKMQGQIADEL 160 (840)
Q Consensus 147 ~~~~~~~~~i~~~l 160 (840)
.+.+.+.+.+....
T Consensus 91 ~dvE~i~r~l~e~A 104 (441)
T TIGR00390 91 RDVESMVRDLTDAA 104 (441)
T ss_pred CCHHHHHHHHHHHH
Confidence 35666666665443
No 358
>PRK04328 hypothetical protein; Provisional
Probab=95.33 E-value=0.097 Score=53.34 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=35.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELG 161 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 161 (840)
...++.|.|.+|+|||+||.++......+ -..++|++.... ++++.+ .+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~--~~~i~~-~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH--PVQVRR-NMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC--HHHHHH-HHHHcC
Confidence 35799999999999999999876654222 345788887663 344433 334444
No 359
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.32 E-value=0.0067 Score=35.39 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=14.4
Q ss_pred ceeEEEecCCcCCCCchhhhc
Q 003192 488 ELRVLDLTKMHLLSLPSSLHL 508 (840)
Q Consensus 488 ~L~~L~l~~~~~~~lp~~i~~ 508 (840)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 360
>PRK00625 shikimate kinase; Provisional
Probab=95.31 E-value=0.015 Score=55.36 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998765
No 361
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.26 E-value=0.12 Score=64.69 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
..+-|-++|++|+|||.||++++.+..+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VP 1657 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVP 1657 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCc
Confidence 35688999999999999999999987643
No 362
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.26 E-value=0.03 Score=51.19 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ 145 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 145 (840)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 589999999999999999999998754 355555555544
No 363
>PRK04040 adenylate kinase; Provisional
Probab=95.26 E-value=0.016 Score=56.05 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+|+|+|++|+||||+++.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 364
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.26 E-value=0.025 Score=55.45 Aligned_cols=108 Identities=8% Similarity=0.144 Sum_probs=55.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc--HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD--IKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
.+|.|+|+.|.||||++..+....... ....++. +..+.. ... ...+..+-.. +.........+...+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~-~~~~i~q~~v---g~~~~~~~~~i~~aLr~- 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHES-KRSLINQREV---GLDTLSFENALKAALRQ- 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccC-ccceeeeccc---CCCccCHHHHHHHHhcC-
Confidence 478999999999999999888776533 3334333 111110 000 0011111000 11111223334444443
Q ss_pred CcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcch
Q 003192 184 KKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGV 224 (840)
Q Consensus 184 k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v 224 (840)
.+=.+++|++.+.+.+..+... ...|..++.|+....+
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 4568999999766544332221 2345567777766544
No 365
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.25 E-value=0.077 Score=58.26 Aligned_cols=91 Identities=19% Similarity=0.291 Sum_probs=58.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccChh-----
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFL-------CEESES----- 170 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~----- 170 (840)
....++|+|.+|+|||||+..+.+....+ +-+.++++-+.+.. .+.++..++...-.... .+++..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 34689999999999999999988877644 45777888776554 45666666654321110 011111
Q ss_pred -hHHHHHHHHHH-c-CCcEEEEEccccc
Q 003192 171 -GRARRLYARMK-E-EKKILVILDDIWA 195 (840)
Q Consensus 171 -~~~~~l~~~l~-~-~k~~LlVlDdv~~ 195 (840)
..+..+.+++. + ++++|+++|++-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12334555554 2 7899999999854
No 366
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.25 E-value=0.067 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..+++|+|+.|.|||||.+.+..-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 379999999999999999999873
No 367
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.23 E-value=0.077 Score=51.84 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=32.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCC--------CcEEEEEeCCCccHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLF--------DEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.++.|+|++|+||||++..+.-.......| ..++|++.... ..++.+.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 588999999999999999988876543323 25788876655 334444443
No 368
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.58 Score=52.78 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=60.2
Q ss_pred CcccccchHHHHHHHHHHhCC----------CC---ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 82 GYQAFDSRISTFKDITNALSN----------PS---VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~~----------~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
.++++-|-.+.++-+.+.+.- -. ..-|-++|++|+|||.||.+++.....+ |++|-.+
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP-- 735 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP-- 735 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH--
Confidence 344555666666656665541 11 2468899999999999999998766533 4555443
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
++ +.+.+|.+ .+..+.+.++.+.-++|+|.+|..++.
T Consensus 736 --El---L~KyIGaS------Eq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 736 --EL---LSKYIGAS------EQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred --HH---HHHHhccc------HHHHHHHHHHhhccCCeEEEecccccc
Confidence 11 12223321 234566667767678999999998653
No 369
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.16 E-value=0.058 Score=58.22 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|++|.||||||+.+.--.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHccc
Confidence 4689999999999999999986543
No 370
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.12 E-value=0.041 Score=56.50 Aligned_cols=55 Identities=24% Similarity=0.176 Sum_probs=42.8
Q ss_pred CcccccchHHHHHH---HHHHhCCC--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC
Q 003192 82 GYQAFDSRISTFKD---ITNALSNP--SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFD 136 (840)
Q Consensus 82 ~~~~~~gr~~~~~~---l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 136 (840)
...+|+|..++.+. +++++.++ ..+.|.|+|++|.|||+||-.+.+.....-+|-
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 34568888765543 66666644 358999999999999999999999998776663
No 371
>PRK10867 signal recognition particle protein; Provisional
Probab=95.12 E-value=0.12 Score=56.68 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
..+|.++|.+|+||||.|..++..+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5799999999999999988888766543
No 372
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.11 E-value=0.035 Score=62.34 Aligned_cols=61 Identities=18% Similarity=0.328 Sum_probs=46.8
Q ss_pred cccCCcccccchHHHHHHHHHHhCC-----CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEE
Q 003192 78 TLSKGYQAFDSRISTFKDITNALSN-----PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVD 142 (840)
Q Consensus 78 ~~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 142 (840)
..|....++.-..+.++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+=|.+
T Consensus 13 y~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 13 YAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred cCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 3455555666677788889998872 2356899999999999999999999875 66667764
No 373
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.09 E-value=0.061 Score=58.33 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=53.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccChhh----
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFL-------CEESESG---- 171 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 171 (840)
....++|+|..|+|||||++.+.+... .+.++++-+++.. .+.++..+++..-+... .+++...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346899999999999999999886432 3556666666554 44556555543321111 0111111
Q ss_pred --HHHHHHHHHH-cCCcEEEEEcccccc
Q 003192 172 --RARRLYARMK-EEKKILVILDDIWAR 196 (840)
Q Consensus 172 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 196 (840)
.+..+.+++. .++++|+++||+-..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1223444443 488999999998543
No 374
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.07 E-value=0.02 Score=50.36 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 108 IGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
|-|+|.+|+||||+|+.++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 5689999999999999999987654
No 375
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.06 E-value=0.11 Score=49.15 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=45.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC-CcE
Q 003192 108 IGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE-KKI 186 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-k~~ 186 (840)
+.|.|.+|.|||++|.++.... ...++++.-.+.++.+ +.+.|.+.-......-...+....+.+.+.+. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6789999999999999987651 2356777666666543 44444332211111111112223333333221 233
Q ss_pred EEEEcccc
Q 003192 187 LVILDDIW 194 (840)
Q Consensus 187 LlVlDdv~ 194 (840)
.+++|.+.
T Consensus 76 ~VLIDclt 83 (169)
T cd00544 76 VVLIDCLT 83 (169)
T ss_pred EEEEEcHh
Confidence 79999863
No 376
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.018 Score=54.28 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
+.|.+.|.+|+||||+|+.++...+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 568889999999999999999987654
No 377
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.04 E-value=0.02 Score=54.38 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=31.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
..++.+.|+.|+|||.+|+.+++.... +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 467889999999999999999998873 1144556666655443
No 378
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.04 E-value=0.077 Score=57.91 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccChh------
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFL-------CEESES------ 170 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~------ 170 (840)
...++|.|.+|+|||+|+..+....... +-+.++|+-+.+.. .+.++.+++...-.... .+++..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 4689999999999999999987775422 34678888776654 45666666654321110 111111
Q ss_pred hHHHHHHHHHH--cCCcEEEEEcccccc
Q 003192 171 GRARRLYARMK--EEKKILVILDDIWAR 196 (840)
Q Consensus 171 ~~~~~l~~~l~--~~k~~LlVlDdv~~~ 196 (840)
..+..+.+++. +++++|+++||+-..
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 12344556665 379999999998543
No 379
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.04 E-value=0.029 Score=55.98 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.|.|+|++|+||||+|+.+++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988764
No 380
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.018 Score=53.00 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIA 126 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~ 126 (840)
+.|+|.|.+|+||||+++.+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 368999999999999999987
No 381
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.99 E-value=0.05 Score=52.78 Aligned_cols=42 Identities=26% Similarity=0.493 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
.|+|.|-||+||||+|..++..+..+..|+ ++=|+...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 689999999999999999777666554342 444555555543
No 382
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.99 E-value=0.024 Score=54.40 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
....|.|+|++|+||||+|+.+++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999999874
No 383
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.96 E-value=0.032 Score=57.16 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+.|.|.|.+|.||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999999999998775
No 384
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.94 E-value=0.11 Score=54.11 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=49.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRARRLYAR 179 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 179 (840)
.++|-|+|+.|+||||||..+....... -..++|++....+++. .+++++.+.+. ....+.+-.+.+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4799999999999999999988766433 3468999988777664 34555554321 1112233334444
Q ss_pred HH-cCCcEEEEEccccc
Q 003192 180 MK-EEKKILVILDDIWA 195 (840)
Q Consensus 180 l~-~~k~~LlVlDdv~~ 195 (840)
+. .+.--++|+|-|-.
T Consensus 126 lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHTTSESEEEEE-CTT
T ss_pred HhhcccccEEEEecCcc
Confidence 43 34445888898753
No 385
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.25 Score=55.69 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=36.5
Q ss_pred cccccchHHHHH---HHHHHhCCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 83 YQAFDSRISTFK---DITNALSNPS---------VDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 83 ~~~~~gr~~~~~---~l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
+.++.|.++.++ ++++.|.++. .+-|.++|++|.|||.||++++....+.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 344567665554 5555555432 3578999999999999999999988765
No 386
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.91 E-value=0.16 Score=55.59 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999888764
No 387
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.90 E-value=0.44 Score=49.08 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 93 FKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 93 ~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
-+++...+..+.+ ...-++|+.|+||+++|..++...-
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 4567777766554 5788999999999999999887664
No 388
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.90 E-value=0.082 Score=55.12 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=44.1
Q ss_pred cccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHH
Q 003192 83 YQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQ 153 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 153 (840)
.+.++=+.+....++..+..+ +-|.|.|++|+||||+|+.++...... .+.|+.+...+..++.
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcC
Confidence 334544555566677777543 469999999999999999999988643 3456666655554443
No 389
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.89 E-value=0.064 Score=58.57 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=34.4
Q ss_pred cccchHHHHHHHHHHhC-------CC---------CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 85 AFDSRISTFKDITNALS-------NP---------SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~-------~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|.+..++.+...+. .. ...-|.++|++|+|||++|+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 37899888887755441 10 125689999999999999999987664
No 390
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.88 E-value=0.13 Score=47.87 Aligned_cols=116 Identities=23% Similarity=0.227 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC---ccHHHHHHHHH----HHhCCCc--cccChhh---HH
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI---PDIKKMQGQIA----DELGLFL--CEESESG---RA 173 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~----~~l~~~~--~~~~~~~---~~ 173 (840)
..|-|++..|.||||.|...+-+...+. + .+.++.+-+. .....+++.+- .+.+... ......+ .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4688888889999999998877665442 2 3455444332 23333333320 0001100 0011111 11
Q ss_pred H----HHHHHHHcCCcEEEEEcccccc-----cCccccCCccCCCCCCcEEEEeeCCcc
Q 003192 174 R----RLYARMKEEKKILVILDDIWAR-----LDLETLGIPLGDEHKGCKVLLTSRSRG 223 (840)
Q Consensus 174 ~----~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iliTtR~~~ 223 (840)
. ...+.+..++-=|+|||++-.. .+.+.+...+.....+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1 2222333344569999998544 233444444555556778999999864
No 391
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.88 E-value=0.084 Score=58.47 Aligned_cols=91 Identities=21% Similarity=0.173 Sum_probs=50.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEE-EEEeCCCc-cHHHHHHHHHHHhCCCccccCh------hhHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVV-FVDVPQIP-DIKKMQGQIADELGLFLCEESE------SGRARRL 176 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~------~~~~~~l 176 (840)
...+.|+|++|+|||||++.+++..... +-++.+ .+-|.+.. .+.++.+.+-..+-......+. ...+..+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999977543 233333 34455443 3444433331111001011111 1122333
Q ss_pred HHHHH-cCCcEEEEEcccccc
Q 003192 177 YARMK-EEKKILVILDDIWAR 196 (840)
Q Consensus 177 ~~~l~-~~k~~LlVlDdv~~~ 196 (840)
.+++. .++.+||++|++-..
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 34443 588999999998543
No 392
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.87 E-value=0.048 Score=48.92 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
..+|.+.|.-|+||||+++.+++....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999998754
No 393
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.86 E-value=0.083 Score=50.12 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+++|+|..|.|||||++.+.....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999987644
No 394
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.85 E-value=0.11 Score=48.33 Aligned_cols=24 Identities=21% Similarity=0.528 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+|.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998775
No 395
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.13 Score=50.00 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=33.8
Q ss_pred ccchHHHHHHHHHHhC-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 86 FDSRISTFKDITNALS-------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
+-|-+-..+++.+... =+..+-|.++|++|+|||.||+.|++.-...
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 4455555555555543 1346788899999999999999999876543
No 396
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.81 E-value=0.03 Score=52.85 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
..++++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999887653
No 397
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.80 E-value=0.16 Score=55.69 Aligned_cols=92 Identities=20% Similarity=0.293 Sum_probs=57.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccChh-----
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFL-------CEESES----- 170 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~----- 170 (840)
....++|.|.+|+|||||+..+........ =+.++++-+.+.. .+.++..++...-.... .+.+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999877665432 2456777776554 45666666654322110 111111
Q ss_pred -hHHHHHHHHHH--cCCcEEEEEcccccc
Q 003192 171 -GRARRLYARMK--EEKKILVILDDIWAR 196 (840)
Q Consensus 171 -~~~~~l~~~l~--~~k~~LlVlDdv~~~ 196 (840)
..+..+.+++. +++++|+++|++-..
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 12334445553 489999999998543
No 398
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.80 E-value=0.073 Score=61.41 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=52.3
Q ss_pred cccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCC
Q 003192 83 YQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 162 (840)
...++|+++.++.+...+... +-+.++|++|+||||+|+.+.+..... .|...+++ .....+..++++.+...++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~-~n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVY-PNPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEE-eCCCCCchHHHHHHHHhhch
Confidence 445789998888777777655 355699999999999999999877654 23333332 22333555667777776654
No 399
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.80 E-value=0.039 Score=57.57 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=37.4
Q ss_pred cccccchHHHHHH---HHHHhCCCC--ccEEEEEcCCCCcHHHHHHHHHHHhhccCCC
Q 003192 83 YQAFDSRISTFKD---ITNALSNPS--VDMIGICGMGGIGKTMLVKEIARQVKGHKLF 135 (840)
Q Consensus 83 ~~~~~gr~~~~~~---l~~~l~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F 135 (840)
..+++|+.+..+. +++++.+.+ .+.|-+.|++|.|||+||-.+++....+-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4578898765544 566665543 5899999999999999999999998866333
No 400
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.80 E-value=0.098 Score=58.08 Aligned_cols=85 Identities=26% Similarity=0.329 Sum_probs=49.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCcccc--ChhhHHHHHHHHHHc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEE--SESGRARRLYARMKE 182 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 182 (840)
..++.|.|.+|+|||||+.+++.....+ =..++|++.... ...+... ++.++...... ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4699999999999999999998876532 235788875443 3333222 44555422110 011123344444444
Q ss_pred CCcEEEEEcccc
Q 003192 183 EKKILVILDDIW 194 (840)
Q Consensus 183 ~k~~LlVlDdv~ 194 (840)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 455678888763
No 401
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.79 E-value=0.11 Score=52.19 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
+|+|.|.+|+||||+|+.+.+.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999877643
No 402
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.79 E-value=0.066 Score=49.42 Aligned_cols=27 Identities=41% Similarity=0.638 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+++|+|..|.|||||++.+.....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 347899999999999999999877543
No 403
>PF13245 AAA_19: Part of AAA domain
Probab=94.78 E-value=0.098 Score=41.93 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=18.6
Q ss_pred ccEEEEEcCCCCcHH-HHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKT-MLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKT-tLa~~v~~~~ 129 (840)
.+++.|.|++|.||| |++..+..-.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467888999999999 5555555544
No 404
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.77 E-value=0.022 Score=55.91 Aligned_cols=23 Identities=48% Similarity=0.759 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 405
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.065 Score=53.98 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=25.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
...++|||++|.|||-+|+.|+....+.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 4689999999999999999999988876
No 406
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.75 E-value=0.15 Score=55.58 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
..+|.++|..|+||||.|.+++..+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999999998876543
No 407
>PRK15453 phosphoribulokinase; Provisional
Probab=94.73 E-value=0.18 Score=51.24 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|+|.|.+|+||||+|+.+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987664
No 408
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.71 E-value=0.13 Score=60.03 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|+|+|.+|+|||||||.+..-..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357899999999999999999866443
No 409
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.71 E-value=0.027 Score=54.27 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+|+|+|++|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 410
>PRK13947 shikimate kinase; Provisional
Probab=94.71 E-value=0.026 Score=54.01 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
-|.|+|++|+||||+|+.+++....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998754
No 411
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.0081 Score=56.61 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=48.0
Q ss_pred CCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchh
Q 003192 712 DAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEV 783 (840)
Q Consensus 712 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 783 (840)
..++.++.|.+.+|..+.+++..... +-.|+|+.|+|++|+++++- ....+..+++|+.|.|.+.+....
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhhc
Confidence 34556666667777766666533322 25788999999999988875 345677788888888877655443
No 412
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.70 E-value=0.023 Score=54.58 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 413
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.70 E-value=0.19 Score=51.60 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ 145 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 145 (840)
..++.|.|.+|+|||++|.+++.....+ =..++|++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4699999999999999999976654322 23578887754
No 414
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.70 E-value=0.19 Score=54.76 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=53.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccChhh----
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFL-------CEESESG---- 171 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 171 (840)
....++|+|..|+|||||++.+++.... +.++++-+.+.. .+.++..+.+..-+... .+++...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 3468899999999999999999876543 455556665544 34455544443322111 0111111
Q ss_pred --HHHHHHHHHH-cCCcEEEEEcccccc
Q 003192 172 --RARRLYARMK-EEKKILVILDDIWAR 196 (840)
Q Consensus 172 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 196 (840)
.+..+.+++. +++++|+++||+-..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1233444443 588999999998543
No 415
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.69 E-value=0.18 Score=56.81 Aligned_cols=119 Identities=29% Similarity=0.313 Sum_probs=64.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCC---CC---cEEEEEeCC-C--------------c-c-HHHHHHHHHHHhC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKL---FD---EVVFVDVPQ-I--------------P-D-IKKMQGQIADELG 161 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---F~---~~~wv~vs~-~--------------~-~-~~~~~~~i~~~l~ 161 (840)
...|+|+|+.|+|||||.+.+......... .. .+.|+.-.. . + + .+.-.+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 468999999999999999999776542210 11 122221111 0 0 0 1333444444444
Q ss_pred CCccc-------cChhhHHHHHHHHHHcCCcEEEEEcccccccCcc---ccCCccCCCCCCcEEEEeeCCcchh
Q 003192 162 LFLCE-------ESESGRARRLYARMKEEKKILVILDDIWARLDLE---TLGIPLGDEHKGCKVLLTSRSRGVL 225 (840)
Q Consensus 162 ~~~~~-------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---~l~~~l~~~~~gs~iliTtR~~~v~ 225 (840)
..... -+..+...-.+..+.-.++=+||||.--+.-+.+ .+...+.. -+|+ ||+.|.++...
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~Gt-vl~VSHDr~Fl 499 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEGT-VLLVSHDRYFL 499 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCCe-EEEEeCCHHHH
Confidence 33221 1222344444455554678899999866554433 22223322 2455 88888888765
No 416
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.62 E-value=0.074 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIAR 127 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~ 127 (840)
..+|||+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998776
No 417
>PRK08149 ATP synthase SpaL; Validated
Probab=94.62 E-value=0.13 Score=55.99 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC-ccHHHHHHHHHHHhCCCc-------cccChh-----
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI-PDIKKMQGQIADELGLFL-------CEESES----- 170 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~-------~~~~~~----- 170 (840)
+...++|+|.+|+|||||+..++.... -+.++...+... .++.++..+......... .+++..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346899999999999999998887543 233344444433 355566666655432211 011111
Q ss_pred -hHHHHHHHHHH-cCCcEEEEEcccccc
Q 003192 171 -GRARRLYARMK-EEKKILVILDDIWAR 196 (840)
Q Consensus 171 -~~~~~l~~~l~-~~k~~LlVlDdv~~~ 196 (840)
..+..+.+++. ++|++|+++||+-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12233444443 489999999998543
No 418
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.58 E-value=0.086 Score=57.46 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=49.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCC-C----cc-ccChh------hH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGL-F----LC-EESES------GR 172 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~----~~-~~~~~------~~ 172 (840)
...++|+|.+|+|||||++.+...... ...+++..--...++.++.......... . .. +++.. ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 468999999999999999988754332 2234444322334455444433332211 1 01 11111 11
Q ss_pred HHHHHHHHH-cCCcEEEEEcccccc
Q 003192 173 ARRLYARMK-EEKKILVILDDIWAR 196 (840)
Q Consensus 173 ~~~l~~~l~-~~k~~LlVlDdv~~~ 196 (840)
+..+.+++. +++++|+++||+-..
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 223334443 488999999998543
No 419
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.57 E-value=0.082 Score=56.75 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=48.0
Q ss_pred cccchHHHHHHHHHHhCC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCcEEEEEeC-CCcc
Q 003192 85 AFDSRISTFKDITNALSN--------------PSVDMIGICGMGGIGKTMLVKEIARQVKGH-KLFDEVVFVDVP-QIPD 148 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs-~~~~ 148 (840)
.++|+++.++.+..++.. ....-|.++|++|+|||++|+.+....... -+++...|...+ ...+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 377888888877766632 013678999999999999999999887533 011222222221 1235
Q ss_pred HHHHHHHHHHHh
Q 003192 149 IKKMQGQIADEL 160 (840)
Q Consensus 149 ~~~~~~~i~~~l 160 (840)
.+.+.+.+....
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 420
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.54 E-value=0.036 Score=53.22 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|.+.|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 36899999999999999999988754
No 421
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.54 E-value=0.093 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+++|+|..|.|||||++.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 46899999999999999999987644
No 422
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.54 E-value=0.044 Score=53.03 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=30.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVP 144 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 144 (840)
.++|.|+|++|+|||||++.+....... |..+++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeeccc
Confidence 4789999999999999999999987654 6555555443
No 423
>PRK13949 shikimate kinase; Provisional
Probab=94.53 E-value=0.033 Score=52.94 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+.|.|+|++|+||||+++.+++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998875
No 424
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.52 E-value=0.084 Score=52.13 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+....|+|+|.+|+|||||...+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 456799999999999999999988753
No 425
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.51 E-value=0.051 Score=57.54 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=42.2
Q ss_pred CcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 82 GYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
++..++|.++.+..++..+.++...-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3456889999999888888888888888999999999999999987654
No 426
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.50 E-value=0.062 Score=56.92 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=39.5
Q ss_pred cccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 83 YQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+..++|.++.+..++-.+.++...-|.|.|..|+||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34578999999888777777766778899999999999999998765
No 427
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.50 E-value=0.031 Score=53.71 Aligned_cols=25 Identities=36% Similarity=0.687 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+|+|.|.+|+||||+|+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 428
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.50 E-value=0.03 Score=51.90 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 429
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.48 E-value=0.2 Score=56.50 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 162 (840)
...++.|.|++|+|||||+.++......+ =..+++++..+ +..++.+.+ +.++.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~ 315 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGI 315 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCC
Confidence 34699999999999999999988876443 23467765544 445555553 44543
No 430
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.44 E-value=0.1 Score=52.67 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh-----ccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK-----GHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
+..|+|++|.||||++..+..... ....-+..+-++...+..+..+...+.
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~ 74 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLK 74 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHH
Confidence 788999999999987777766651 111233444444444444444444333
No 431
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=1.1 Score=43.76 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHhC-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHH
Q 003192 88 SRISTFKDITNALS-------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 88 gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 154 (840)
|-++.+++|.+.+. =.+.+-|.++|++|.|||-||+.|++.-. +.|+.||...- +++
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgsel---vqk 220 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSEL---VQK 220 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechHHH---HHH
Confidence 34555666666554 12456788999999999999999987543 45667775422 222
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC------------cc----ccCCccCC--CCCCcEEE
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD------------LE----TLGIPLGD--EHKGCKVL 216 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~~----~l~~~l~~--~~~gs~il 216 (840)
-|-+ .......++--.++.-+-+|++|.+++... .+ ++...+.. ..+.-+||
T Consensus 221 ~ige----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvi 290 (404)
T KOG0728|consen 221 YIGE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVI 290 (404)
T ss_pred Hhhh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEE
Confidence 2111 001122222222334577888888764310 00 11112211 23445677
Q ss_pred EeeCCcchhh----cccCccceEEccCCCHHHHHHHHHHH
Q 003192 217 LTSRSRGVLS----REMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 217 iTtR~~~v~~----~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
..|-.-+++. +.......++..+-+++.-.++++-+
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 6655444442 11223345677777777666777654
No 432
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.43 E-value=0.13 Score=57.09 Aligned_cols=85 Identities=25% Similarity=0.295 Sum_probs=48.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCcccc--ChhhHHHHHHHHHHc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEE--SESGRARRLYARMKE 182 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 182 (840)
..++.|.|.+|+|||||+.+++....... ..++|++.... ...+.. -++.++...... ........+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 46899999999999999999977665431 35788865433 333222 123343321110 001123344444444
Q ss_pred CCcEEEEEcccc
Q 003192 183 EKKILVILDDIW 194 (840)
Q Consensus 183 ~k~~LlVlDdv~ 194 (840)
.+.-++|+|.+.
T Consensus 169 ~~~~~vVIDSIq 180 (454)
T TIGR00416 169 ENPQACVIDSIQ 180 (454)
T ss_pred cCCcEEEEecch
Confidence 455677777763
No 433
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.42 E-value=0.34 Score=48.75 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=34.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELG 161 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 161 (840)
..++.|.|.+|+||||+|.++......+ -..++|++... +.+++.+. +++++
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~--~~~~i~~~-~~~~g 71 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE--SRESIIRQ-AAQFG 71 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH-HHHhC
Confidence 4799999999999999999876544322 34678887643 33444433 44444
No 434
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.41 E-value=0.048 Score=53.74 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=38.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEE-------EeCCCccHHHH--HHHHHHHhCCCcc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFV-------DVPQIPDIKKM--QGQIADELGLFLC 165 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~~~~~--~~~i~~~l~~~~~ 165 (840)
...|.++||+|.||||+.+.++.....++.-..++-. ...-+.|+++. .++..++.+....
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 4578889999999999999999887765332333322 11223355543 3466676655443
No 435
>PRK14530 adenylate kinase; Provisional
Probab=94.41 E-value=0.036 Score=55.22 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 436
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.39 E-value=0.082 Score=52.20 Aligned_cols=139 Identities=16% Similarity=0.139 Sum_probs=87.1
Q ss_pred cCCCCCceEEEecCCCCCCCCCh---hhhcCCCceeEEEecCCcCCCCc-----h---------hhhcccCCcEEEecCc
Q 003192 458 ELECPQLKFFYMYPKDPALKIPD---KFFAGMIELRVLDLTKMHLLSLP-----S---------SLHLLVNLRTLCLDQS 520 (840)
Q Consensus 458 ~~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~lp-----~---------~i~~L~~L~~L~L~~~ 520 (840)
.++||+|+..+|+.|.+....|+ +++++-..|..|.+++|.+..+. . ...+-+.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34788888888888887766664 34677788888888888765321 1 1234567888888888
Q ss_pred ccCC-c-----ccccCCCCCCEEeccCCCCCC------CcHHHhccCCCCEEecCCCCCCccccccccccccccccCChh
Q 003192 521 VLGD-I-----AVIGELKQLEILSLSSSDIEH------LPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLD 588 (840)
Q Consensus 521 ~l~~-~-----~~i~~L~~L~~L~L~~~~l~~------lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~ 588 (840)
.+.+ + ..+..-.+|+++.+..|.|.. +-..+..+.+|+.||+..|.....-..- .-.
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~-----------La~ 236 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY-----------LAD 236 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH-----------HHH
Confidence 8765 2 123334678888888887761 1123456788888888885432211111 112
Q ss_pred hhhcCCCCCeEEEEeecCc
Q 003192 589 ELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 589 ~l~~l~~L~~L~l~~~~~~ 607 (840)
.++..+.|+.|.+..|-++
T Consensus 237 al~~W~~lrEL~lnDClls 255 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred Hhcccchhhhccccchhhc
Confidence 3455556777777766543
No 437
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.39 E-value=0.14 Score=55.68 Aligned_cols=92 Identities=23% Similarity=0.209 Sum_probs=57.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccC--CCC---------cEEEEEeCCCccHHHHHHHHHHHhC-CCc-------
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHK--LFD---------EVVFVDVPQIPDIKKMQGQIADELG-LFL------- 164 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~~------- 164 (840)
....++|.|-+|+|||||+..+.+...... ..| .++++-+++.....+...+.+..-+ ...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 346899999999999999999988765200 011 4577777777666665555555444 111
Q ss_pred cccChh------hHHHHHHHHHH--cCCcEEEEEccccc
Q 003192 165 CEESES------GRARRLYARMK--EEKKILVILDDIWA 195 (840)
Q Consensus 165 ~~~~~~------~~~~~l~~~l~--~~k~~LlVlDdv~~ 195 (840)
.+++.. ..+..+.+++. +++++|+++||+-.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 011111 12334556666 47999999999854
No 438
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.38 E-value=0.039 Score=53.96 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...++||+|.+|.|||||++.++--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 346899999999999999999986544
No 439
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.38 E-value=0.17 Score=50.92 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+++|+|+.|+|||||.+.++.-.+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 357999999999999999999987543
No 440
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.38 E-value=0.16 Score=51.48 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=51.8
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCCcE-EEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccChhh---
Q 003192 105 VDMIGICGMGGIGKTMLV-KEIARQVKGHKLFDEV-VFVDVPQIP-DIKKMQGQIADELGLFL-------CEESESG--- 171 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~--- 171 (840)
...++|.|.+|+|||+|| ..+.+... -+.+ +++-+.+.. .+.++.+++...-.... .+++...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 467999999999999996 55665432 3334 666666654 45666666654321110 1111111
Q ss_pred ---HHHHHHHHHH-cCCcEEEEEcccccc
Q 003192 172 ---RARRLYARMK-EEKKILVILDDIWAR 196 (840)
Q Consensus 172 ---~~~~l~~~l~-~~k~~LlVlDdv~~~ 196 (840)
.+..+.+++. +++.+|+++||+-..
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 1233344443 478999999998654
No 441
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.36 E-value=0.082 Score=47.61 Aligned_cols=99 Identities=14% Similarity=0.269 Sum_probs=46.4
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCcccCC--cccccCCCCCCE
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVLGD--IAVIGELKQLEI 536 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~ 536 (840)
++++|+.+.+.. . ...++...|.+++.|+.+.+.++ +..++. .+..+.+|+.+.+.. .+.. ...+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 556666666653 2 23455556777777777777664 555544 556666677777754 3222 234556667777
Q ss_pred EeccCCCCCCCcHH-HhccCCCCEEecCC
Q 003192 537 LSLSSSDIEHLPRE-IGRLSKLRLLDLTN 564 (840)
Q Consensus 537 L~L~~~~l~~lp~~-i~~L~~L~~L~l~~ 564 (840)
+++..+ +..++.. +.+. +|+.+.+..
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 777554 5544432 3444 666666543
No 442
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.1 Score=49.74 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+++|+|+.|.|||||++.++....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 346899999999999999999987654
No 443
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.36 E-value=0.066 Score=55.16 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=41.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCC
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGL 162 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 162 (840)
+..+++.|.|.+|+|||++|.++....... ...++||+.... .+++.+.+.+ ++-
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 345799999999999999999998877655 778999987764 4455444433 443
No 444
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.35 E-value=0.096 Score=56.02 Aligned_cols=64 Identities=19% Similarity=0.137 Sum_probs=47.9
Q ss_pred ccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHH
Q 003192 86 FDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 156 (840)
++|+++.+..+...+..+ +-+-+.|.+|+|||+||+.++...... .++|.+.......++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCch
Confidence 677877777777776655 457899999999999999999987633 4566777777766655443
No 445
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.31 E-value=0.032 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 446
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.30 E-value=0.083 Score=55.31 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=35.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQ 155 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 155 (840)
.++|.+.|.|||||||+|...+-...... ..++-|+..+..+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999776665542 44777777666666555443
No 447
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.30 E-value=0.047 Score=54.00 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=27.5
Q ss_pred HhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 99 ALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 99 ~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+...++++|+++|..|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34466899999999999999999999988754
No 448
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.29 E-value=0.04 Score=52.11 Aligned_cols=23 Identities=43% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 003192 108 IGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
|.|.|.+|+||||+++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 78999999999999999998874
No 449
>PRK14531 adenylate kinase; Provisional
Probab=94.29 E-value=0.13 Score=49.60 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..|.|+|++|.||||+++.+++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998764
No 450
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.28 E-value=0.16 Score=55.27 Aligned_cols=46 Identities=26% Similarity=0.224 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHhC-------C-------C----CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 85 AFDSRISTFKDITNALS-------N-------P----SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~-------~-------~----~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|.++.++.+...+. . + ....|.++|++|+|||++|+.++....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 36899988887766551 1 1 124799999999999999999997664
No 451
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.27 E-value=0.069 Score=49.58 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 93 FKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 93 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
++++.+.+.+ +++.++|.+|+|||||+..+..+.
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5677777654 789999999999999999887643
No 452
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.22 E-value=0.033 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.|+|+|++|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999988653
No 453
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.22 E-value=0.067 Score=56.55 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=38.8
Q ss_pred CCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 81 KGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
.++..++|++..++.+.-.+.+.+..=|.+.|.+|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4456688999988887765554444568899999999999999998765
No 454
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.21 E-value=0.22 Score=58.23 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc------cChhhHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE------ESESGRARRLYA 178 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 178 (840)
.+++-|.|.+|+||||||.+++...... =..++|++....++.+ .+++++.+... .........+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 4788999999999999998866544322 2457999887777643 66777665321 111222222223
Q ss_pred HHHcCCcEEEEEcccc
Q 003192 179 RMKEEKKILVILDDIW 194 (840)
Q Consensus 179 ~l~~~k~~LlVlDdv~ 194 (840)
.+..++--++|+|.+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 3344567789999975
No 455
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.21 E-value=0.28 Score=53.58 Aligned_cols=92 Identities=17% Similarity=0.299 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccChhh----
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFL-------CEESESG---- 171 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 171 (840)
....++|.|.+|+|||||+..+........ =+.++++-+.+.. .+.++..++...-.... .+++...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999887655331 2467777776553 55667666654321110 1111111
Q ss_pred --HHHHHHHHHH--cCCcEEEEEcccccc
Q 003192 172 --RARRLYARMK--EEKKILVILDDIWAR 196 (840)
Q Consensus 172 --~~~~l~~~l~--~~k~~LlVlDdv~~~ 196 (840)
.+..+.+++. +++++|+++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2334556664 378999999998543
No 456
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.18 E-value=0.17 Score=46.05 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEE
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVD 142 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 142 (840)
.+.|.|..|.|||+.+..+............++|++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 467999999999999988877665443345567664
No 457
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.17 E-value=0.13 Score=51.60 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=31.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH-hhc-cCCCCcEEEEEeCCCccHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ-VKG-HKLFDEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~-~~~-~~~F~~~~wv~vs~~~~~~~~~~~i 156 (840)
..++.|.|.+|+|||++|.++... .+. . ..++|++..... +++.+.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~g---e~vlyvs~ee~~--~~l~~~~ 67 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFG---EKVLYVSFEEPP--EELIENM 67 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESSS-H--HHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcC---CcEEEEEecCCH--HHHHHHH
Confidence 469999999999999999986644 333 2 247888775543 4444443
No 458
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.16 E-value=0.037 Score=53.43 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
++|+|+|++|+||||||+.+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998854
No 459
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.16 E-value=1.4 Score=45.66 Aligned_cols=151 Identities=11% Similarity=0.019 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCc----
Q 003192 90 ISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFL---- 164 (840)
Q Consensus 90 ~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---- 164 (840)
...++.+...+..+.+ ..+-++| |+||+++|..++...-.....+. ..+......+.|...-..+.
T Consensus 8 ~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~-------~~Cg~C~~C~~i~~~~HPD~~~i~ 78 (290)
T PRK07276 8 PKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGV-------LPCGHCRSCRLIEQGEFSDVTVIE 78 (290)
T ss_pred HHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCeeeec
Confidence 3445666666666554 4677777 58999999988876532211100 00000111111110000000
Q ss_pred -cc-cChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc-chhhcccCccceE
Q 003192 165 -CE-ESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVLSREMDSEINF 235 (840)
Q Consensus 165 -~~-~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~~~~~~~~~~~ 235 (840)
.+ .-..+.+..+.+.+. .+++-++|+|+++... ....+...+-.-..++.+|++|.+. .+.......-..+
T Consensus 79 p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i 158 (290)
T PRK07276 79 PQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158 (290)
T ss_pred CCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceee
Confidence 00 001122333333332 2566789999997652 3444444444334456666666554 4544433444567
Q ss_pred EccCCCHHHHHHHHH
Q 003192 236 LVGILSQEESWSLFQ 250 (840)
Q Consensus 236 ~l~~L~~~~~~~lf~ 250 (840)
.+.+ +.++..+.+.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 7766 6666555554
No 460
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.15 E-value=0.043 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 003192 108 IGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
|.|+|++|.||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 461
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.14 E-value=0.16 Score=53.51 Aligned_cols=38 Identities=18% Similarity=0.462 Sum_probs=29.2
Q ss_pred HHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 95 DITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 95 ~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
.+++.+. .+...+|+|.|++|+||||++..+.......
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443 3457899999999999999999998876544
No 462
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.13 E-value=0.24 Score=54.41 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhhcc-----CCCCcEEEEEeCCCcc-HHHHHHHHHHHhC-CCc-------cccCh
Q 003192 105 VDMIGICGMGGIGKTMLV-KEIARQVKGH-----KLFDEVVFVDVPQIPD-IKKMQGQIADELG-LFL-------CEESE 169 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~-~~~-------~~~~~ 169 (840)
...++|.|-.|+|||+|| ..+.+..... +.-+.++++-+++... +.++. +.+++-+ ... ..++.
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~-~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIH-RLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHH-HHHHhcCCccceEEEEECCCCCH
Confidence 457899999999999997 6677765321 2345678888877653 34433 3333322 111 01111
Q ss_pred hh------HHHHHHHHHH-cCCcEEEEEcccccc
Q 003192 170 SG------RARRLYARMK-EEKKILVILDDIWAR 196 (840)
Q Consensus 170 ~~------~~~~l~~~l~-~~k~~LlVlDdv~~~ 196 (840)
.. ....+.+++. +++.+|+|+||+...
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 11 1223344443 478999999998543
No 463
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.12 E-value=0.15 Score=53.88 Aligned_cols=24 Identities=21% Similarity=0.583 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 108 IGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+.+.|++|.||||+++.+.+....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~ 25 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRR 25 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999988763
No 464
>PRK14529 adenylate kinase; Provisional
Probab=94.11 E-value=0.14 Score=50.75 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
.|.|.|++|+||||+|+.++..+..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3788999999999999999988764
No 465
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.10 E-value=0.049 Score=52.00 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...|.|+|+.|+||||+|+.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 466
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.10 E-value=0.17 Score=48.09 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADE 159 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 159 (840)
.+|.|.|.+|.||||+|..+...... .++++.-.... -.++.+.|...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~-~~e~~~ri~~h 49 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPF-DDEMAARIAHH 49 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCC-hHHHHHHHHHH
Confidence 36899999999999999999876432 23444433333 33455555443
No 467
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.06 E-value=0.048 Score=53.93 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|+|+|++|+||||||+.+.....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 357899999999999999999998653
No 468
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.05 E-value=0.034 Score=30.00 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=6.4
Q ss_pred CCCEEeccCCCCCCCc
Q 003192 533 QLEILSLSSSDIEHLP 548 (840)
Q Consensus 533 ~L~~L~L~~~~l~~lp 548 (840)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 469
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=94.02 E-value=0.19 Score=55.24 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=56.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCC---------c-----cccC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLF---------L-----CEES 168 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~---------~-----~~~~ 168 (840)
....++|.|-+|+|||||+..+....... +=+.++++-+++.. .+.++...+...-... . ..++
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 34689999999999999999888763321 12678888777654 4566666665511100 0 0111
Q ss_pred hh------hHHHHHHHHHHc-C-CcEEEEEcccccc
Q 003192 169 ES------GRARRLYARMKE-E-KKILVILDDIWAR 196 (840)
Q Consensus 169 ~~------~~~~~l~~~l~~-~-k~~LlVlDdv~~~ 196 (840)
.. ..+..+.+++.. + +++||++||+-..
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 11 123445566653 4 4899999998543
No 470
>PRK13948 shikimate kinase; Provisional
Probab=94.02 E-value=0.054 Score=51.95 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+.|.++||.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999998764
No 471
>PRK14527 adenylate kinase; Provisional
Probab=94.01 E-value=0.057 Score=52.65 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|.|+|++|.||||+|+.+++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988765
No 472
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.00 E-value=0.059 Score=52.87 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
....+|+|+|++|+||||||+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999987643
No 473
>PRK13975 thymidylate kinase; Provisional
Probab=93.99 E-value=0.05 Score=53.33 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
.+|.|.|+.|+||||+|+.+++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999998764
No 474
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.97 E-value=0.32 Score=53.57 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC--cEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccCh-----
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFD--EVVFVDVPQIP-DIKKMQGQIADELGLFL-------CEESE----- 169 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~----- 169 (840)
...++|.|-.|+|||||+..+.+.....+.+. .++++-+++.. .+.++...+...-.... ...+.
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 46789999999999999999998765432122 45666666543 45666666654322111 01111
Q ss_pred -hhHHHHHHHHHH--cCCcEEEEEcccccc
Q 003192 170 -SGRARRLYARMK--EEKKILVILDDIWAR 196 (840)
Q Consensus 170 -~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 196 (840)
...+..+.+++. +++++|+++||+-..
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 112344566666 589999999998543
No 475
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.96 E-value=0.054 Score=52.72 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 476
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.92 E-value=0.066 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIAR 127 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~ 127 (840)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 477
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.92 E-value=0.098 Score=48.40 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=26.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 102 NPSVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 102 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
..+..+|.+.|.+|.||||+|..++......
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 4456799999999999999999999988654
No 478
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.92 E-value=0.05 Score=50.78 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEE
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVF 140 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w 140 (840)
+|+|+|+.|+||||++..+....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 58999999999999999999988654 3544333
No 479
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.91 E-value=0.24 Score=54.03 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=53.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------cccChhh----
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLFL-------CEESESG---- 171 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 171 (840)
+...++|+|..|+|||||.+.+++... -+.++++-+.+.. .+.++....+..-+... .+++...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999987654 3567777776654 44555444332211110 0111111
Q ss_pred --HHHHHHHHHH-cCCcEEEEEcccccc
Q 003192 172 --RARRLYARMK-EEKKILVILDDIWAR 196 (840)
Q Consensus 172 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 196 (840)
.+..+.+++. .++++|+++||+-..
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1233444443 489999999998543
No 480
>PRK13946 shikimate kinase; Provisional
Probab=93.89 E-value=0.052 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+.|.++|++|+||||+++.+++....
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 57999999999999999999998753
No 481
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.85 E-value=0.16 Score=49.90 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
.+|+|.|+.|+||||+++.+++....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 37899999999999999999998863
No 482
>PRK13695 putative NTPase; Provisional
Probab=93.84 E-value=0.078 Score=50.80 Aligned_cols=34 Identities=41% Similarity=0.507 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEE
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFV 141 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 141 (840)
.|+|+|.+|+|||||++.+++..... .+...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 48899999999999999998876542 34434344
No 483
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.85 Score=47.57 Aligned_cols=29 Identities=38% Similarity=0.478 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
..+-|-++|++|.|||-+|+.++.+....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 35678899999999999999999987755
No 484
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.84 E-value=0.05 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
...+|+|+|++|+|||||.+.++--
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999998763
No 485
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.83 E-value=0.048 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
.+|+|+|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 486
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.83 E-value=0.059 Score=46.16 Aligned_cols=22 Identities=41% Similarity=0.404 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIA 126 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~ 126 (840)
...++|+|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 487
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.82 E-value=0.042 Score=52.02 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 003192 108 IGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~ 129 (840)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999998875
No 488
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.82 E-value=0.18 Score=48.62 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=63.1
Q ss_pred HHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCC-c-EEEEEeCCCc---cHHHHHHHHHHHhCCCccccCh
Q 003192 96 ITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGH-KLFD-E-VVFVDVPQIP---DIKKMQGQIADELGLFLCEESE 169 (840)
Q Consensus 96 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~-~-~~wv~vs~~~---~~~~~~~~i~~~l~~~~~~~~~ 169 (840)
++..+-+.+..-..|.|++|+||||+.+-++.-.... ..|- . +.-|+-+... ...--+.++..+... ...
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dV----ld~ 203 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDV----LDP 203 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhh----ccc
Confidence 5555555555567899999999999999998866533 1232 1 2223222110 000001111111111 111
Q ss_pred hhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCc
Q 003192 170 SGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSR 222 (840)
Q Consensus 170 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~ 222 (840)
--..+-+......-.+=++|.|.+-..++..++...+ ..|.+++.|..-.
T Consensus 204 cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 204 CPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred chHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 1122333344444557899999998776655554443 4577777665543
No 489
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.82 E-value=0.055 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 003192 108 IGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 108 i~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
|.|+|..|+|||||.+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987543
No 490
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.063 Score=49.06 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
.++|.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4799999999999999999877766
No 491
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.77 E-value=0.21 Score=57.59 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+...|+|+|+.|.|||||++.+..-..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999976543
No 492
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.77 E-value=0.099 Score=50.51 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=31.7
Q ss_pred cccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 83 YQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..+++|.+..+..+.-..... .=|.++|++|+|||++|+.+..-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHh
Confidence 456788887777666555443 57889999999999999998763
No 493
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.76 E-value=0.17 Score=54.87 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 90 ISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 90 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
...++.+++.+.......+.|.|.||+|||++.+.+.+..+..
T Consensus 7 ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 7 RRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 3445666666665666789999999999999999999988654
No 494
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.75 E-value=0.4 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+..|+|++|+|||+||..++-...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999887654
No 495
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=1.3 Score=43.61 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=38.8
Q ss_pred CcccccchHHHHHHHHHHhCC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 82 GYQAFDSRISTFKDITNALSN-------------PSVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
.+.++-|-++.++++++.+.- ...+-|..+|++|.|||-+|+..+.+-...
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 355567888889999888741 134678899999999999999887665433
No 496
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.74 E-value=0.061 Score=49.91 Aligned_cols=29 Identities=31% Similarity=0.658 Sum_probs=26.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK 133 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 133 (840)
.++++|+|+.|.|||||+..+....+.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47999999999999999999999888663
No 497
>PHA02774 E1; Provisional
Probab=93.73 E-value=0.12 Score=57.69 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=34.5
Q ss_pred HHHHHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeC
Q 003192 93 FKDITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVP 144 (840)
Q Consensus 93 ~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 144 (840)
+..+..++.. ++..-+.|+|++|+|||.+|-.+.+-...+ .+.||+..
T Consensus 421 l~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~----vi~fvN~~ 469 (613)
T PHA02774 421 LTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGK----VISFVNSK 469 (613)
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC----EEEEEECc
Confidence 4555555543 334689999999999999999999876422 45677753
No 498
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.70 E-value=0.059 Score=50.28 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
+-|.++||.|+||||+.+.+++...-.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 458899999999999999999987654
No 499
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.66 E-value=0.36 Score=45.45 Aligned_cols=117 Identities=20% Similarity=0.171 Sum_probs=62.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEE---EEEeCCCccHHHHHHHHH---HHhCCC--ccccC---hhhHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVV---FVDVPQIPDIKKMQGQIA---DELGLF--LCEES---ESGRA 173 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~---wv~vs~~~~~~~~~~~i~---~~l~~~--~~~~~---~~~~~ 173 (840)
...|-|++..|.||||.|..++-+..... +. +. |+.-.........+..+. .+.+.. +...+ +...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~-v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KK-VGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-Ce-EEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788888899999999998877765442 32 32 333222223333333320 001111 01111 11122
Q ss_pred HHH----HHHHHcCCcEEEEEccccccc-----CccccCCccCCCCCCcEEEEeeCCcc
Q 003192 174 RRL----YARMKEEKKILVILDDIWARL-----DLETLGIPLGDEHKGCKVLLTSRSRG 223 (840)
Q Consensus 174 ~~l----~~~l~~~k~~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~iliTtR~~~ 223 (840)
... .+.+..++-=++|||.+-... +.+.+...+.....+.-||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 222 233334555699999985432 33344444555566778999999863
No 500
>PTZ00494 tuzin-like protein; Provisional
Probab=93.65 E-value=1.5 Score=47.07 Aligned_cols=164 Identities=11% Similarity=0.107 Sum_probs=94.3
Q ss_pred cCCcccccchHHHHHHHHHHhC---CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHH
Q 003192 80 SKGYQAFDSRISTFKDITNALS---NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 156 (840)
+.....++.|+.+-..+.+.|. ....+++.+.|.-|.||++|.+....+.... .++|.|... ++-++.|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGT---EDTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCC---cchHHHH
Confidence 3455568889877666666665 3457899999999999999999888766543 678888765 4556788
Q ss_pred HHHhCCCcccc--ChhhHHHHHH---HHHHcCCcEEEEEcc--cccc-cCccccCCccCCCCCCcEEEEeeCCcchh--h
Q 003192 157 ADELGLFLCEE--SESGRARRLY---ARMKEEKKILVILDD--IWAR-LDLETLGIPLGDEHKGCKVLLTSRSRGVL--S 226 (840)
Q Consensus 157 ~~~l~~~~~~~--~~~~~~~~l~---~~l~~~k~~LlVlDd--v~~~-~~~~~l~~~l~~~~~gs~iliTtR~~~v~--~ 226 (840)
.++++....+. +..+-+..-. .....++.-+||+-= -.+. ..+.+. ..+.....-|-|++----+.+. .
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhh
Confidence 89998764321 1111111111 111235566666621 1100 001110 0111223345555532222211 1
Q ss_pred cccCccceEEccCCCHHHHHHHHHHH
Q 003192 227 REMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 227 ~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
...+....|.+++++.++|.++-++.
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhcc
Confidence 12334457999999999999988765
Done!