Query 003192
Match_columns 840
No_of_seqs 572 out of 4488
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 16:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-46 5.6E-51 429.2 19.4 311 87-419 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 5.2E-38 1.8E-42 360.4 19.1 283 86-412 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2E-36 6.9E-41 384.2 28.8 315 79-418 119-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 9.8E-34 3.4E-38 329.1 27.3 309 79-415 119-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-27 3.6E-32 279.9 25.6 133 437-571 29-168 (606)
6 3rgz_A Protein brassinosteroid 100.0 5.5E-28 1.9E-32 288.8 20.2 378 440-834 247-715 (768)
7 2z63_A TOLL-like receptor 4, v 100.0 3.4E-27 1.2E-31 273.7 25.8 376 437-834 25-529 (570)
8 4eco_A Uncharacterized protein 99.9 6.1E-28 2.1E-32 281.7 16.9 112 460-572 204-347 (636)
9 4ecn_A Leucine-rich repeat pro 99.9 1.6E-27 5.6E-32 282.3 19.1 314 485-834 489-838 (876)
10 3t6q_A CD180 antigen; protein- 99.9 1.1E-26 3.6E-31 271.4 25.0 377 439-833 56-510 (606)
11 4ecn_A Leucine-rich repeat pro 99.9 4.7E-27 1.6E-31 278.4 22.0 363 437-837 445-873 (876)
12 3rgz_A Protein brassinosteroid 99.9 3.1E-27 1.1E-31 282.3 20.0 327 437-778 197-548 (768)
13 3t6q_A CD180 antigen; protein- 99.9 1.2E-26 4.2E-31 270.8 22.6 380 437-833 30-486 (606)
14 1o6v_A Internalin A; bacterial 99.9 4.3E-26 1.5E-30 256.6 24.8 340 439-834 45-386 (466)
15 3j0a_A TOLL-like receptor 5; m 99.9 7.7E-26 2.6E-30 273.1 25.8 389 430-837 16-517 (844)
16 2z81_A CD282 antigen, TOLL-lik 99.9 2.1E-26 7.3E-31 265.5 19.7 379 438-834 24-508 (549)
17 4eco_A Uncharacterized protein 99.9 2.2E-26 7.4E-31 268.6 19.7 363 437-837 203-633 (636)
18 3vq2_A TLR4, TOLL-like recepto 99.9 5.9E-26 2E-30 265.1 22.1 379 438-834 54-556 (606)
19 3v47_A TOLL-like receptor 5B a 99.9 2.3E-25 7.8E-30 250.5 25.1 357 438-834 28-406 (455)
20 4fmz_A Internalin; leucine ric 99.9 5.8E-25 2E-29 237.7 23.7 304 437-834 41-344 (347)
21 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-24 4.8E-29 248.4 27.8 369 439-834 20-479 (520)
22 1ziw_A TOLL-like receptor 3; i 99.9 3.7E-25 1.3E-29 261.9 22.5 381 438-833 23-490 (680)
23 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-24 4.3E-29 255.5 23.7 378 437-834 49-578 (635)
24 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-24 6.7E-29 255.8 24.8 374 443-833 7-440 (680)
25 1o6v_A Internalin A; bacterial 99.9 5.2E-24 1.8E-28 239.6 26.5 327 433-813 61-389 (466)
26 2id5_A Lingo-1, leucine rich r 99.9 2.2E-24 7.6E-29 243.8 22.3 314 443-812 14-333 (477)
27 2z7x_B TOLL-like receptor 1, v 99.9 2.4E-24 8.1E-29 246.5 22.4 350 438-813 43-482 (520)
28 2z63_A TOLL-like receptor 4, v 99.9 2E-24 6.9E-29 250.3 21.8 370 443-833 10-504 (570)
29 3bz5_A Internalin-J, INLJ; leu 99.9 5.7E-24 1.9E-28 237.3 24.2 335 437-819 39-394 (457)
30 4fmz_A Internalin; leucine ric 99.9 5.3E-24 1.8E-28 230.1 22.9 287 432-811 58-345 (347)
31 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-24 4.7E-29 250.4 19.2 376 445-833 10-483 (549)
32 3j0a_A TOLL-like receptor 5; m 99.9 7.9E-24 2.7E-28 255.5 25.3 148 443-607 7-161 (844)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-23 9.9E-28 239.5 28.2 367 439-834 51-508 (562)
34 3o6n_A APL1; leucine-rich repe 99.9 5.8E-24 2E-28 233.6 20.6 304 439-813 44-353 (390)
35 3v47_A TOLL-like receptor 5B a 99.9 9.8E-24 3.3E-28 237.1 20.9 341 443-833 13-381 (455)
36 3oja_B Anopheles plasmodium-re 99.9 9.5E-24 3.2E-28 244.9 20.5 304 439-813 50-359 (597)
37 3o6n_A APL1; leucine-rich repe 99.9 2.7E-23 9.3E-28 228.3 20.3 279 438-779 67-350 (390)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-22 5.9E-27 233.0 23.0 352 437-815 73-513 (562)
39 2id5_A Lingo-1, leucine rich r 99.9 1.5E-22 5.1E-27 228.8 21.8 295 437-779 29-331 (477)
40 3oja_B Anopheles plasmodium-re 99.9 9.3E-23 3.2E-27 236.6 20.3 279 438-779 73-356 (597)
41 1jl5_A Outer protein YOPM; leu 99.9 4E-23 1.4E-27 230.2 14.1 340 438-834 32-407 (454)
42 4fcg_A Uncharacterized protein 99.9 2.9E-22 9.8E-27 213.7 19.4 231 485-777 79-310 (328)
43 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-21 7.3E-26 228.0 24.8 120 448-570 39-162 (635)
44 3bz5_A Internalin-J, INLJ; leu 99.9 8.2E-22 2.8E-26 219.8 20.0 252 460-759 40-303 (457)
45 2ft3_A Biglycan; proteoglycan, 99.9 9E-22 3.1E-26 210.9 17.4 294 463-835 34-332 (332)
46 1xku_A Decorin; proteoglycan, 99.9 6.8E-21 2.3E-25 204.0 24.2 156 440-612 31-189 (330)
47 1jl5_A Outer protein YOPM; leu 99.9 5.8E-21 2E-25 212.7 23.7 326 439-833 90-426 (454)
48 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-21 6.3E-26 208.5 18.4 289 440-778 33-330 (332)
49 1xku_A Decorin; proteoglycan, 99.9 1.3E-20 4.4E-25 201.8 19.7 293 463-833 32-329 (330)
50 4fcg_A Uncharacterized protein 99.9 6.1E-21 2.1E-25 203.4 16.9 148 440-605 81-240 (328)
51 3g06_A SSPH2 (leucine-rich rep 99.8 7.7E-20 2.6E-24 209.8 24.2 255 441-779 41-295 (622)
52 1ogq_A PGIP-2, polygalacturona 99.8 7.2E-21 2.5E-25 201.6 14.2 152 440-608 50-211 (313)
53 1ogq_A PGIP-2, polygalacturona 99.8 5.8E-21 2E-25 202.4 11.5 250 462-816 50-308 (313)
54 2z80_A TOLL-like receptor 2, v 99.8 3.7E-20 1.3E-24 200.2 16.6 268 444-780 35-313 (353)
55 3zyi_A Leucine-rich repeat-con 99.8 3.3E-19 1.1E-23 199.5 18.4 241 442-725 56-300 (452)
56 3o53_A Protein LRIM1, AGAP0063 99.8 3.6E-20 1.2E-24 196.9 9.5 273 480-837 27-300 (317)
57 2z80_A TOLL-like receptor 2, v 99.8 2.7E-19 9.1E-24 193.4 16.0 275 460-814 29-316 (353)
58 2z66_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 188.4 16.0 148 443-607 10-163 (306)
59 3ogk_B Coronatine-insensitive 99.8 9.5E-21 3.3E-25 220.4 4.0 218 439-668 111-350 (592)
60 3zyj_A Leucine-rich repeat-con 99.8 5.2E-19 1.8E-23 197.2 16.5 241 442-725 45-289 (440)
61 3g06_A SSPH2 (leucine-rich rep 99.8 5.4E-18 1.8E-22 194.5 23.5 242 439-760 60-301 (622)
62 3ogk_B Coronatine-insensitive 99.8 1.8E-19 6.1E-24 209.6 9.6 350 460-834 110-524 (592)
63 1z7x_W Ribonuclease inhibitor; 99.8 7E-21 2.4E-25 214.3 -2.3 175 439-626 2-209 (461)
64 1z7x_W Ribonuclease inhibitor; 99.8 8.7E-21 3E-25 213.5 -1.5 176 438-625 26-236 (461)
65 2p1m_B Transport inhibitor res 99.8 1.2E-19 4E-24 211.3 7.6 113 460-572 103-228 (594)
66 1ozn_A Reticulon 4 receptor; N 99.8 3.7E-18 1.3E-22 178.5 16.5 265 465-834 14-285 (285)
67 3zyj_A Leucine-rich repeat-con 99.8 5.2E-18 1.8E-22 189.1 18.2 242 491-811 47-291 (440)
68 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-19 4.6E-24 192.4 4.8 263 487-837 10-276 (317)
69 1ozn_A Reticulon 4 receptor; N 99.8 6.9E-18 2.4E-22 176.4 16.1 152 443-611 14-170 (285)
70 2z66_A Variable lymphocyte rec 99.7 3.2E-18 1.1E-22 181.1 12.4 158 437-610 25-191 (306)
71 3zyi_A Leucine-rich repeat-con 99.7 5.9E-18 2E-22 189.3 15.1 221 437-697 72-301 (452)
72 1h6u_A Internalin H; cell adhe 99.7 6.7E-17 2.3E-21 170.6 17.4 190 438-697 39-228 (308)
73 2o6q_A Variable lymphocyte rec 99.7 6.6E-17 2.3E-21 167.4 17.0 155 440-611 16-174 (270)
74 3oja_A Leucine-rich immune mol 99.7 1.5E-17 5.3E-22 187.0 12.3 217 486-781 33-250 (487)
75 1wwl_A Monocyte differentiatio 99.7 1.5E-18 5.1E-23 183.9 3.3 242 461-778 42-306 (312)
76 3rfs_A Internalin B, repeat mo 99.7 1.9E-17 6.6E-22 171.5 11.2 123 439-564 40-166 (272)
77 2p1m_B Transport inhibitor res 99.7 8.3E-19 2.8E-23 204.1 -0.1 107 460-566 64-195 (594)
78 1p9a_G Platelet glycoprotein I 99.7 7.5E-17 2.6E-21 168.4 14.6 156 439-612 9-166 (290)
79 2xwt_C Thyrotropin receptor; s 99.7 4.7E-17 1.6E-21 165.2 10.8 144 450-611 21-173 (239)
80 2z62_A TOLL-like receptor 4, v 99.7 1.4E-16 4.8E-21 165.6 13.2 124 440-564 28-158 (276)
81 3oja_A Leucine-rich immune mol 99.7 8.3E-17 2.8E-21 181.0 11.9 236 439-725 33-272 (487)
82 1wwl_A Monocyte differentiatio 99.7 2.2E-17 7.6E-22 174.8 6.4 219 442-725 65-306 (312)
83 2z62_A TOLL-like receptor 4, v 99.7 2.1E-16 7.1E-21 164.3 13.6 216 445-697 12-235 (276)
84 2xwt_C Thyrotropin receptor; s 99.7 1.3E-16 4.5E-21 161.9 10.3 158 438-611 29-197 (239)
85 1p9a_G Platelet glycoprotein I 99.7 5.3E-16 1.8E-20 161.9 14.6 134 460-612 8-142 (290)
86 2o6q_A Variable lymphocyte rec 99.7 8.8E-16 3E-20 158.8 16.1 171 438-624 35-213 (270)
87 3rfs_A Internalin B, repeat mo 99.7 3.9E-16 1.3E-20 161.6 13.4 208 444-699 23-235 (272)
88 2ast_B S-phase kinase-associat 99.6 4E-16 1.4E-20 167.4 11.8 79 487-565 70-152 (336)
89 4ay9_X Follicle-stimulating ho 99.6 1.8E-15 6.3E-20 162.8 16.8 237 490-777 12-255 (350)
90 1h6t_A Internalin B; cell adhe 99.6 1.9E-15 6.3E-20 158.0 16.3 167 438-626 44-210 (291)
91 2ast_B S-phase kinase-associat 99.6 3.4E-16 1.2E-20 167.9 9.9 254 488-820 48-314 (336)
92 1h6u_A Internalin H; cell adhe 99.6 6.7E-15 2.3E-19 155.2 18.6 171 434-626 57-227 (308)
93 3m19_A Variable lymphocyte rec 99.6 3.7E-15 1.3E-19 152.3 15.5 168 440-624 14-187 (251)
94 4ay9_X Follicle-stimulating ho 99.6 2.6E-15 8.8E-20 161.6 13.8 155 443-613 12-173 (350)
95 4glp_A Monocyte differentiatio 99.6 3.6E-15 1.2E-19 157.7 12.7 104 461-564 90-206 (310)
96 3m19_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 147.5 15.3 156 438-609 33-194 (251)
97 4ezg_A Putative uncharacterize 99.6 1.1E-14 3.8E-19 142.7 13.3 150 437-607 41-194 (197)
98 1m9s_A Internalin B; cell inva 99.6 9.9E-15 3.4E-19 167.3 13.8 165 438-624 41-205 (605)
99 2qen_A Walker-type ATPase; unk 99.6 1.8E-13 6.1E-18 147.5 22.7 291 81-411 9-348 (350)
100 2ca6_A RAN GTPase-activating p 99.6 4E-16 1.4E-20 170.7 1.8 270 452-777 21-339 (386)
101 1w5s_A Origin recognition comp 99.6 1.2E-13 4.2E-18 152.4 21.9 306 83-407 21-387 (412)
102 3e6j_A Variable lymphocyte rec 99.6 2.7E-14 9.3E-19 143.4 14.6 150 442-608 21-173 (229)
103 1h6t_A Internalin B; cell adhe 99.6 6.3E-14 2.2E-18 146.3 17.7 156 434-611 62-217 (291)
104 3cvr_A Invasion plasmid antige 99.5 3.2E-14 1.1E-18 161.1 15.6 190 441-679 60-249 (571)
105 2fna_A Conserved hypothetical 99.5 4.3E-13 1.5E-17 144.9 23.8 290 81-410 10-355 (357)
106 4glp_A Monocyte differentiatio 99.5 7.3E-15 2.5E-19 155.3 9.6 107 460-566 62-180 (310)
107 1xeu_A Internalin C; cellular 99.5 5.1E-14 1.7E-18 144.6 15.0 152 437-611 38-189 (263)
108 4ezg_A Putative uncharacterize 99.5 2.4E-14 8.3E-19 140.2 12.0 147 460-626 42-191 (197)
109 1xeu_A Internalin C; cellular 99.5 1.3E-14 4.3E-19 149.1 10.0 166 438-626 17-182 (263)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 2.4E-14 8.3E-19 142.7 11.8 149 443-607 14-166 (220)
111 2v9t_B SLIT homolog 2 protein 99.5 3.4E-14 1.2E-18 141.7 12.0 148 443-607 14-165 (220)
112 2o6s_A Variable lymphocyte rec 99.5 6.3E-14 2.2E-18 138.7 13.6 147 443-606 10-160 (208)
113 1m9s_A Internalin B; cell inva 99.5 8.8E-15 3E-19 167.7 8.0 191 439-673 20-210 (605)
114 2ca6_A RAN GTPase-activating p 99.5 1.1E-14 3.9E-19 159.1 7.1 158 439-607 31-229 (386)
115 3goz_A Leucine-rich repeat-con 99.5 2E-14 6.7E-19 155.6 8.4 97 468-565 4-119 (362)
116 2ell_A Acidic leucine-rich nuc 99.5 2.3E-13 7.9E-18 129.5 11.1 131 439-573 23-164 (168)
117 2xot_A Amphoterin-induced prot 99.4 2.4E-13 8.1E-18 146.8 12.0 156 443-612 21-181 (361)
118 3cvr_A Invasion plasmid antige 99.4 4.1E-13 1.4E-17 152.1 13.9 182 462-699 59-243 (571)
119 2je0_A Acidic leucine-rich nuc 99.4 3.7E-13 1.3E-17 125.2 10.7 123 439-564 16-149 (149)
120 3goz_A Leucine-rich repeat-con 99.4 2.4E-14 8.4E-19 154.8 2.7 67 659-726 224-295 (362)
121 2ell_A Acidic leucine-rich nuc 99.4 2.1E-13 7.1E-18 129.8 8.6 138 461-612 23-165 (168)
122 2o6s_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 129.5 13.8 129 438-567 26-160 (208)
123 2xot_A Amphoterin-induced prot 99.4 2.6E-13 9E-18 146.5 9.6 155 437-607 36-202 (361)
124 2v9t_B SLIT homolog 2 protein 99.4 6.9E-13 2.3E-17 132.2 11.8 128 438-566 30-163 (220)
125 3e6j_A Variable lymphocyte rec 99.4 1.3E-12 4.4E-17 131.1 13.9 131 437-568 37-172 (229)
126 1dce_A Protein (RAB geranylger 99.4 2.8E-15 9.5E-20 170.9 -8.3 124 440-564 349-495 (567)
127 2v70_A SLIT-2, SLIT homolog 2 99.4 1.3E-12 4.4E-17 130.2 11.7 130 437-567 29-165 (220)
128 4b8c_D Glucose-repressible alc 99.4 2.5E-13 8.6E-18 159.8 6.5 153 440-610 173-332 (727)
129 1w8a_A SLIT protein; signaling 99.4 1.9E-12 6.4E-17 126.0 10.9 126 443-569 11-140 (192)
130 1a9n_A U2A', U2A'; complex (nu 99.3 1.3E-12 4.6E-17 125.2 8.2 123 440-565 19-150 (176)
131 2je0_A Acidic leucine-rich nuc 99.3 1.7E-12 5.8E-17 120.7 7.5 108 462-572 17-129 (149)
132 2wfh_A SLIT homolog 2 protein 99.3 7.8E-12 2.7E-16 121.5 12.4 120 443-565 13-136 (193)
133 1dce_A Protein (RAB geranylger 99.3 5.5E-12 1.9E-16 143.6 12.2 123 463-600 442-566 (567)
134 1a9n_A U2A', U2A'; complex (nu 99.3 4E-12 1.4E-16 121.8 9.1 137 456-607 13-153 (176)
135 2o6r_A Variable lymphocyte rec 99.3 1.4E-11 4.9E-16 118.1 12.3 126 442-569 9-138 (177)
136 2wfh_A SLIT homolog 2 protein 99.3 9.3E-12 3.2E-16 121.0 11.0 124 465-607 13-139 (193)
137 1njg_A DNA polymerase III subu 99.3 6.6E-11 2.3E-15 120.1 17.6 201 79-289 18-231 (250)
138 2chg_A Replication factor C sm 99.3 1E-10 3.5E-15 116.8 17.5 192 79-288 12-206 (226)
139 4b8c_D Glucose-repressible alc 99.3 1.6E-12 5.4E-17 152.9 4.3 103 441-545 225-329 (727)
140 1w8a_A SLIT protein; signaling 99.2 1.4E-11 4.7E-16 119.8 8.9 124 465-607 11-139 (192)
141 2qby_B CDC6 homolog 3, cell di 99.2 1.3E-10 4.5E-15 126.6 16.6 285 84-394 20-338 (384)
142 1ds9_A Outer arm dynein; leuci 99.2 6.7E-13 2.3E-17 130.0 -2.1 151 442-600 25-180 (198)
143 2v1u_A Cell division control p 99.2 1E-09 3.6E-14 119.6 23.1 288 83-394 18-350 (387)
144 1ds9_A Outer arm dynein; leuci 99.2 5.5E-13 1.9E-17 130.6 -3.5 112 482-609 43-155 (198)
145 2qby_A CDC6 homolog 1, cell di 99.2 1.2E-10 4E-15 127.2 14.2 201 83-284 19-243 (386)
146 1fnn_A CDC6P, cell division co 99.2 1.4E-09 4.8E-14 118.7 21.9 288 84-394 17-350 (389)
147 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.3E-15 111.5 11.1 126 464-608 9-138 (177)
148 2r9u_A Variable lymphocyte rec 99.1 2.9E-10 1E-14 108.2 10.0 78 487-564 33-114 (174)
149 2r9u_A Variable lymphocyte rec 99.1 3.1E-10 1E-14 108.1 9.3 105 490-611 15-122 (174)
150 1sxj_B Activator 1 37 kDa subu 99.0 1.4E-09 4.9E-14 115.3 14.8 194 78-288 15-212 (323)
151 3g39_A Variable lymphocyte rec 99.0 4.6E-10 1.6E-14 106.5 9.3 101 490-607 12-115 (170)
152 3g39_A Variable lymphocyte rec 99.0 8.8E-10 3E-14 104.5 10.5 101 443-545 12-115 (170)
153 3sb4_A Hypothetical leucine ri 99.0 9.5E-10 3.3E-14 116.9 11.8 89 684-785 224-313 (329)
154 1iqp_A RFCS; clamp loader, ext 98.9 4.4E-09 1.5E-13 111.7 12.4 193 79-289 20-215 (327)
155 1hqc_A RUVB; extended AAA-ATPa 98.9 8.5E-09 2.9E-13 109.3 14.6 180 80-289 8-214 (324)
156 3sb4_A Hypothetical leucine ri 98.9 2.2E-09 7.4E-14 114.1 9.4 246 439-721 48-327 (329)
157 4fdw_A Leucine rich hypothetic 98.8 8E-08 2.7E-12 104.3 17.8 258 462-777 113-379 (401)
158 2chq_A Replication factor C sm 98.8 6E-08 2.1E-12 102.5 15.6 187 79-286 12-204 (319)
159 1jr3_A DNA polymerase III subu 98.7 1.8E-07 6.1E-12 101.2 16.7 198 79-286 11-221 (373)
160 3un9_A NLR family member X1; l 98.7 1.9E-09 6.5E-14 116.0 0.3 160 439-609 71-254 (372)
161 3te6_A Regulatory protein SIR3 98.7 3.7E-07 1.3E-11 94.3 16.6 168 86-254 22-212 (318)
162 2ifg_A High affinity nerve gro 98.7 2.9E-08 9.9E-13 106.3 8.2 98 466-566 12-114 (347)
163 1jbk_A CLPB protein; beta barr 98.6 7.3E-08 2.5E-12 93.3 10.0 52 80-131 18-69 (195)
164 2ifg_A High affinity nerve gro 98.6 3.6E-08 1.2E-12 105.6 8.4 101 444-547 12-118 (347)
165 4fdw_A Leucine rich hypothetic 98.6 3.3E-07 1.1E-11 99.4 14.4 257 441-751 114-379 (401)
166 3un9_A NLR family member X1; l 98.6 9.9E-09 3.4E-13 110.4 1.7 137 461-608 71-225 (372)
167 4fs7_A Uncharacterized protein 98.5 5E-07 1.7E-11 98.4 13.8 56 460-518 69-125 (394)
168 3h4m_A Proteasome-activating n 98.5 1.6E-06 5.5E-11 89.7 15.7 181 81-285 14-230 (285)
169 1d2n_A N-ethylmaleimide-sensit 98.5 2.2E-06 7.6E-11 87.9 16.3 194 85-305 34-262 (272)
170 1sxj_D Activator 1 41 kDa subu 98.5 8.4E-07 2.9E-11 95.1 13.7 200 79-286 32-235 (353)
171 3pvs_A Replication-associated 98.4 3.2E-06 1.1E-10 92.5 17.2 184 78-287 20-216 (447)
172 3bos_A Putative DNA replicatio 98.4 4E-07 1.4E-11 91.7 9.1 175 83-287 27-218 (242)
173 1sxj_A Activator 1 95 kDa subu 98.4 1.5E-06 5E-11 97.8 14.2 195 78-286 33-253 (516)
174 1sxj_E Activator 1 40 kDa subu 98.4 2.6E-06 9.1E-11 91.2 13.6 199 79-286 9-237 (354)
175 3d8b_A Fidgetin-like protein 1 98.3 1.6E-05 5.5E-10 84.8 19.2 184 81-287 81-296 (357)
176 2qz4_A Paraplegin; AAA+, SPG7, 98.3 8.6E-06 3E-10 83.0 16.3 181 83-285 5-221 (262)
177 3u61_B DNA polymerase accessor 98.3 3.1E-06 1.1E-10 89.3 13.2 182 78-283 20-213 (324)
178 3pfi_A Holliday junction ATP-d 98.3 7.8E-06 2.7E-10 86.8 15.5 178 79-287 24-228 (338)
179 1sxj_C Activator 1 40 kDa subu 98.3 7.4E-06 2.5E-10 87.0 15.2 185 78-281 19-207 (340)
180 1xwi_A SKD1 protein; VPS4B, AA 98.3 3.9E-05 1.3E-09 80.4 19.8 185 81-287 9-224 (322)
181 3syl_A Protein CBBX; photosynt 98.3 2.7E-06 9.1E-11 89.2 10.7 154 85-254 32-218 (309)
182 3eie_A Vacuolar protein sortin 98.3 2.4E-05 8.2E-10 82.2 17.9 183 81-286 15-228 (322)
183 4fs7_A Uncharacterized protein 98.2 6.7E-06 2.3E-10 89.4 13.1 58 712-776 294-351 (394)
184 3uk6_A RUVB-like 2; hexameric 98.2 1.9E-05 6.6E-10 84.9 16.2 197 83-286 43-303 (368)
185 1a5t_A Delta prime, HOLB; zinc 98.2 2.4E-05 8.2E-10 82.6 16.6 171 89-285 7-204 (334)
186 2ra8_A Uncharacterized protein 98.2 2.1E-06 7.3E-11 91.3 8.3 65 713-778 250-317 (362)
187 2z4s_A Chromosomal replication 98.2 1.3E-05 4.5E-10 87.8 14.2 185 83-285 104-305 (440)
188 3e4g_A ATP synthase subunit S, 98.2 8.1E-07 2.8E-11 82.7 3.8 65 716-784 62-130 (176)
189 3vfd_A Spastin; ATPase, microt 98.2 5.5E-05 1.9E-09 81.8 18.8 184 80-286 111-326 (389)
190 3b9p_A CG5977-PA, isoform A; A 98.2 8.8E-05 3E-09 77.0 19.6 183 81-286 18-233 (297)
191 2p65_A Hypothetical protein PF 98.2 5.6E-06 1.9E-10 79.3 9.5 52 80-131 18-69 (187)
192 3e4g_A ATP synthase subunit S, 98.1 1.6E-06 5.4E-11 80.8 5.0 83 488-570 62-154 (176)
193 2qp9_X Vacuolar protein sortin 98.1 3.9E-05 1.3E-09 81.6 16.6 183 81-286 48-261 (355)
194 2zan_A Vacuolar protein sortin 98.1 9.4E-05 3.2E-09 81.2 19.5 184 81-286 131-345 (444)
195 3pxg_A Negative regulator of g 98.1 4E-05 1.4E-09 84.8 15.6 152 80-253 176-338 (468)
196 1io0_A Tropomodulin; LRR prote 98.1 3.2E-06 1.1E-10 81.0 5.7 106 460-565 34-161 (185)
197 1io0_A Tropomodulin; LRR prote 98.0 2.5E-06 8.6E-11 81.7 3.8 116 481-607 30-164 (185)
198 3rw6_A Nuclear RNA export fact 98.0 8.3E-06 2.9E-10 82.1 7.6 79 484-562 167-258 (267)
199 1l8q_A Chromosomal replication 98.0 4.1E-05 1.4E-09 80.6 13.3 170 90-282 20-204 (324)
200 3cf0_A Transitional endoplasmi 98.0 0.00011 3.9E-09 76.2 16.3 176 82-281 13-223 (301)
201 2ra8_A Uncharacterized protein 98.0 4.7E-06 1.6E-10 88.7 5.0 133 460-607 170-320 (362)
202 4b4t_J 26S protease regulatory 97.9 0.00036 1.2E-08 73.8 18.5 173 83-279 147-354 (405)
203 2gno_A DNA polymerase III, gam 97.9 5.5E-05 1.9E-09 78.2 11.5 147 88-253 1-152 (305)
204 4b4t_M 26S protease regulatory 97.9 0.00021 7.3E-09 76.8 15.6 174 82-279 179-387 (434)
205 1qvr_A CLPB protein; coiled co 97.9 4E-05 1.4E-09 91.7 11.1 158 80-252 166-344 (854)
206 3pxi_A Negative regulator of g 97.9 0.00018 6.1E-09 85.1 16.5 153 80-252 176-337 (758)
207 3ec2_A DNA replication protein 97.8 1.5E-05 5.1E-10 76.0 5.9 117 89-222 19-143 (180)
208 1lv7_A FTSH; alpha/beta domain 97.8 0.0013 4.3E-08 66.5 20.2 181 81-285 9-224 (257)
209 3rw6_A Nuclear RNA export fact 97.8 3.1E-06 1.1E-10 85.2 0.4 108 484-600 138-257 (267)
210 4b4t_L 26S protease subunit RP 97.8 0.00093 3.2E-08 71.9 19.6 173 83-279 180-387 (437)
211 4b4t_I 26S protease regulatory 97.8 0.00098 3.3E-08 70.8 19.3 174 82-279 180-388 (437)
212 4gt6_A Cell surface protein; l 97.8 0.0011 3.7E-08 71.8 20.1 287 463-778 65-367 (394)
213 4b4t_H 26S protease regulatory 97.8 0.0008 2.7E-08 72.2 18.1 173 83-279 208-415 (467)
214 4b4t_K 26S protease regulatory 97.7 0.0011 3.6E-08 71.3 18.7 173 83-279 171-379 (428)
215 3n70_A Transport activator; si 97.7 1.6E-05 5.4E-10 72.6 3.8 45 85-129 2-48 (145)
216 2w58_A DNAI, primosome compone 97.7 0.00011 3.8E-09 71.3 9.8 115 90-222 35-159 (202)
217 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00032 1.1E-08 83.0 15.4 158 80-252 182-361 (758)
218 4gt6_A Cell surface protein; l 97.7 0.00085 2.9E-08 72.6 17.1 309 477-831 53-386 (394)
219 1ofh_A ATP-dependent HSL prote 97.6 0.00023 7.9E-09 74.3 11.6 46 85-130 16-75 (310)
220 1in4_A RUVB, holliday junction 97.6 0.0021 7.3E-08 67.6 19.0 176 80-286 21-223 (334)
221 2ce7_A Cell division protein F 97.6 0.0015 5.1E-08 71.5 17.2 173 83-279 15-221 (476)
222 2r62_A Cell division protease 97.6 6.2E-05 2.1E-09 76.8 5.9 49 83-131 10-70 (268)
223 4fcw_A Chaperone protein CLPB; 97.4 0.00028 9.6E-09 73.7 9.1 104 86-196 19-131 (311)
224 2c9o_A RUVB-like 1; hexameric 97.4 0.0013 4.6E-08 72.4 14.8 48 83-130 36-88 (456)
225 3hu3_A Transitional endoplasmi 97.4 0.0012 4.1E-08 72.9 13.8 180 82-285 202-414 (489)
226 3t15_A Ribulose bisphosphate c 97.2 0.0025 8.7E-08 65.5 13.0 27 105-131 36-62 (293)
227 4h09_A Hypothetical leucine ri 97.2 0.0042 1.4E-07 66.7 14.6 18 478-495 60-77 (379)
228 3m6a_A ATP-dependent protease 97.1 0.0019 6.5E-08 72.6 11.6 155 86-252 83-265 (543)
229 3co5_A Putative two-component 97.1 5.3E-05 1.8E-09 68.9 -1.0 45 85-129 5-51 (143)
230 2x8a_A Nuclear valosin-contain 97.0 0.006 2.1E-07 61.9 13.3 149 83-253 9-191 (274)
231 3cf2_A TER ATPase, transitiona 97.0 0.0049 1.7E-07 71.5 13.3 173 83-279 203-407 (806)
232 1ixz_A ATP-dependent metallopr 96.9 0.0099 3.4E-07 59.6 14.1 149 107-279 51-221 (254)
233 1iy2_A ATP-dependent metallopr 96.9 0.0083 2.8E-07 61.2 13.2 174 82-279 38-245 (278)
234 3pxi_A Negative regulator of g 96.9 0.0013 4.3E-08 77.8 7.9 59 85-145 492-559 (758)
235 2r44_A Uncharacterized protein 96.8 0.0076 2.6E-07 63.3 12.5 44 85-130 28-71 (331)
236 4h09_A Hypothetical leucine ri 96.7 0.04 1.4E-06 58.9 17.8 111 657-784 214-324 (379)
237 2kjq_A DNAA-related protein; s 96.7 0.0023 7.8E-08 58.2 6.1 47 97-145 28-74 (149)
238 2dhr_A FTSH; AAA+ protein, hex 96.6 0.011 3.8E-07 65.0 12.5 174 82-279 29-236 (499)
239 1n0w_A DNA repair protein RAD5 96.6 0.0077 2.6E-07 59.9 10.4 90 105-195 24-130 (243)
240 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0023 7.8E-08 65.3 6.3 68 106-195 124-193 (331)
241 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.004 1.4E-07 61.6 7.9 39 105-145 23-61 (235)
242 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0037 1.3E-07 73.9 8.3 45 85-129 459-512 (758)
243 2qgz_A Helicase loader, putati 96.5 0.0038 1.3E-07 64.6 7.1 53 89-143 133-189 (308)
244 3io5_A Recombination and repai 96.4 0.014 4.6E-07 59.4 10.5 84 107-195 30-122 (333)
245 2cvh_A DNA repair and recombin 96.4 0.012 4E-07 57.6 10.1 44 105-153 20-63 (220)
246 1ypw_A Transitional endoplasmi 96.3 0.01 3.5E-07 69.9 10.4 151 82-252 202-384 (806)
247 3hr8_A Protein RECA; alpha and 96.3 0.014 4.9E-07 61.0 10.3 84 105-195 61-150 (356)
248 1v5w_A DMC1, meiotic recombina 96.3 0.019 6.5E-07 60.4 11.2 58 105-163 122-183 (343)
249 2z43_A DNA repair and recombin 96.2 0.016 5.5E-07 60.4 9.8 58 105-163 107-168 (324)
250 3lda_A DNA repair protein RAD5 96.1 0.018 6.3E-07 61.4 10.0 89 105-194 178-283 (400)
251 1jr3_D DNA polymerase III, del 96.0 0.038 1.3E-06 58.2 12.2 159 103-285 16-184 (343)
252 3ice_A Transcription terminati 96.0 0.0087 3E-07 62.3 6.8 98 94-196 162-273 (422)
253 1qvr_A CLPB protein; coiled co 96.0 0.0037 1.3E-07 74.7 4.6 59 85-145 559-626 (854)
254 2zr9_A Protein RECA, recombina 96.0 0.024 8.1E-07 59.6 10.1 84 105-195 61-150 (349)
255 2i1q_A DNA repair and recombin 95.9 0.019 6.6E-07 59.8 9.2 58 105-163 98-169 (322)
256 1rz3_A Hypothetical protein rb 95.9 0.008 2.7E-07 57.9 5.6 43 89-131 3-48 (201)
257 1u94_A RECA protein, recombina 95.9 0.03 1E-06 58.8 10.4 83 105-194 63-151 (356)
258 1xp8_A RECA protein, recombina 95.8 0.032 1.1E-06 58.8 10.1 83 105-194 74-162 (366)
259 2px0_A Flagellar biosynthesis 95.8 0.034 1.2E-06 56.9 10.0 39 104-143 104-142 (296)
260 3c8u_A Fructokinase; YP_612366 95.8 0.011 3.7E-07 57.3 6.0 41 91-131 6-48 (208)
261 4a74_A DNA repair and recombin 95.6 0.042 1.4E-06 53.9 9.8 56 105-161 25-84 (231)
262 2ck3_D ATP synthase subunit be 95.5 0.07 2.4E-06 57.4 11.4 100 95-195 142-264 (482)
263 1sky_E F1-ATPase, F1-ATP synth 95.5 0.029 1E-06 60.4 8.5 89 106-195 152-256 (473)
264 3kb2_A SPBC2 prophage-derived 95.4 0.0089 3E-07 55.8 3.8 25 106-130 2-26 (173)
265 1qhx_A CPT, protein (chloramph 95.4 0.0087 3E-07 56.3 3.6 25 106-130 4-28 (178)
266 2bjv_A PSP operon transcriptio 95.4 0.011 3.6E-07 59.9 4.3 61 83-145 5-67 (265)
267 1fx0_B ATP synthase beta chain 95.3 0.046 1.6E-06 59.0 9.4 99 96-195 155-277 (498)
268 3vaa_A Shikimate kinase, SK; s 95.3 0.011 3.7E-07 56.8 4.1 27 104-130 24-50 (199)
269 3lw7_A Adenylate kinase relate 95.3 0.0097 3.3E-07 55.7 3.6 20 106-125 2-21 (179)
270 2ehv_A Hypothetical protein PH 95.2 0.047 1.6E-06 54.4 8.8 38 105-144 30-68 (251)
271 3tqc_A Pantothenate kinase; bi 95.2 0.063 2.2E-06 55.3 9.6 27 104-130 91-117 (321)
272 3dm5_A SRP54, signal recogniti 95.2 0.1 3.4E-06 56.1 11.3 29 104-132 99-127 (443)
273 3trf_A Shikimate kinase, SK; a 95.1 0.013 4.4E-07 55.5 3.9 26 105-130 5-30 (185)
274 2ga8_A Hypothetical 39.9 kDa p 95.0 0.025 8.6E-07 58.6 6.0 42 90-131 5-50 (359)
275 1kag_A SKI, shikimate kinase I 95.0 0.011 3.9E-07 55.1 3.2 25 106-130 5-29 (173)
276 1kgd_A CASK, peripheral plasma 95.0 0.014 4.8E-07 55.0 3.8 26 105-130 5-30 (180)
277 1pzn_A RAD51, DNA repair and r 95.0 0.055 1.9E-06 56.9 8.7 57 104-161 130-190 (349)
278 1g8p_A Magnesium-chelatase 38 95.0 0.013 4.5E-07 61.9 4.0 50 81-130 21-70 (350)
279 4eun_A Thermoresistant glucoki 95.0 0.016 5.4E-07 55.7 4.1 27 103-129 27-53 (200)
280 3bh0_A DNAB-like replicative h 95.0 0.15 5.1E-06 52.7 11.8 51 105-159 68-118 (315)
281 3uie_A Adenylyl-sulfate kinase 94.9 0.017 5.8E-07 55.5 4.2 28 103-130 23-50 (200)
282 1zp6_A Hypothetical protein AT 94.9 0.014 4.9E-07 55.5 3.5 24 105-128 9-32 (191)
283 1pgv_A TMD-1, tropomodulin TMD 94.9 0.027 9.4E-07 53.2 5.4 60 483-542 66-136 (197)
284 4akg_A Glutathione S-transfera 94.8 0.22 7.5E-06 65.5 15.1 79 106-194 1268-1346(2695)
285 1nks_A Adenylate kinase; therm 94.8 0.016 5.6E-07 55.1 3.7 26 106-131 2-27 (194)
286 3t61_A Gluconokinase; PSI-biol 94.8 0.014 4.9E-07 56.1 3.3 26 105-130 18-43 (202)
287 1ly1_A Polynucleotide kinase; 94.8 0.016 5.5E-07 54.5 3.6 22 106-127 3-24 (181)
288 1kht_A Adenylate kinase; phosp 94.8 0.018 6.2E-07 54.7 4.0 26 106-131 4-29 (192)
289 3aez_A Pantothenate kinase; tr 94.8 0.056 1.9E-06 55.7 7.8 41 103-143 88-128 (312)
290 3iij_A Coilin-interacting nucl 94.7 0.016 5.6E-07 54.5 3.5 26 105-130 11-36 (180)
291 1vma_A Cell division protein F 94.7 0.094 3.2E-06 53.7 9.3 50 92-143 83-140 (306)
292 2yvu_A Probable adenylyl-sulfa 94.7 0.023 7.9E-07 53.8 4.4 29 104-132 12-40 (186)
293 2jaq_A Deoxyguanosine kinase; 94.7 0.019 6.6E-07 55.2 3.9 24 107-130 2-25 (205)
294 2hf9_A Probable hydrogenase ni 94.7 0.025 8.5E-07 55.5 4.7 38 93-130 26-63 (226)
295 1odf_A YGR205W, hypothetical 3 94.7 0.039 1.3E-06 56.2 6.3 29 103-131 29-57 (290)
296 1via_A Shikimate kinase; struc 94.7 0.017 5.9E-07 54.0 3.4 25 106-130 5-29 (175)
297 1y63_A LMAJ004144AAA protein; 94.6 0.022 7.4E-07 53.9 4.1 25 104-128 9-33 (184)
298 2rhm_A Putative kinase; P-loop 94.6 0.021 7E-07 54.4 3.9 26 105-130 5-30 (193)
299 2xxa_A Signal recognition part 94.6 0.13 4.4E-06 55.6 10.6 40 104-144 99-138 (433)
300 1xjc_A MOBB protein homolog; s 94.6 0.023 7.8E-07 52.4 4.0 29 104-132 3-31 (169)
301 1knq_A Gluconate kinase; ALFA/ 94.6 0.024 8.2E-07 53.0 4.3 25 105-129 8-32 (175)
302 2qor_A Guanylate kinase; phosp 94.6 0.017 5.6E-07 55.8 3.2 27 104-130 11-37 (204)
303 3kl4_A SRP54, signal recogniti 94.6 0.15 5.1E-06 54.8 10.9 37 105-143 97-133 (433)
304 2dr3_A UPF0273 protein PH0284; 94.6 0.1 3.5E-06 51.7 9.3 39 105-145 23-61 (247)
305 3l0o_A Transcription terminati 94.6 0.02 6.7E-07 59.6 3.8 53 94-147 163-217 (427)
306 1zuh_A Shikimate kinase; alpha 94.6 0.023 7.7E-07 52.8 4.0 26 105-130 7-32 (168)
307 3tau_A Guanylate kinase, GMP k 94.6 0.022 7.6E-07 55.0 4.0 27 104-130 7-33 (208)
308 1ojl_A Transcriptional regulat 94.5 0.025 8.7E-07 58.2 4.6 46 85-130 3-50 (304)
309 3tr0_A Guanylate kinase, GMP k 94.5 0.023 7.8E-07 54.7 4.0 25 105-129 7-31 (205)
310 1j8m_F SRP54, signal recogniti 94.5 0.35 1.2E-05 49.2 13.0 87 105-193 98-189 (297)
311 1ye8_A Protein THEP1, hypothet 94.5 0.025 8.5E-07 53.0 4.1 24 107-130 2-25 (178)
312 3hws_A ATP-dependent CLP prote 94.5 0.035 1.2E-06 59.0 5.7 45 86-130 17-76 (363)
313 2ze6_A Isopentenyl transferase 94.5 0.022 7.6E-07 56.9 3.9 25 106-130 2-26 (253)
314 2iyv_A Shikimate kinase, SK; t 94.5 0.018 6.2E-07 54.4 3.1 25 106-130 3-27 (184)
315 2c95_A Adenylate kinase 1; tra 94.5 0.024 8.3E-07 54.0 4.0 26 105-130 9-34 (196)
316 1cke_A CK, MSSA, protein (cyti 94.5 0.023 8E-07 55.7 3.9 25 106-130 6-30 (227)
317 1pgv_A TMD-1, tropomodulin TMD 94.4 0.033 1.1E-06 52.7 4.6 114 482-605 36-168 (197)
318 3nbx_X ATPase RAVA; AAA+ ATPas 94.4 0.015 5.1E-07 64.1 2.6 44 85-130 23-66 (500)
319 2wsm_A Hydrogenase expression/ 94.4 0.023 7.9E-07 55.5 3.7 41 90-130 15-55 (221)
320 2plr_A DTMP kinase, probable t 94.4 0.062 2.1E-06 51.9 6.8 27 106-132 5-31 (213)
321 3umf_A Adenylate kinase; rossm 94.4 0.028 9.6E-07 54.4 4.2 27 104-130 28-54 (217)
322 1tev_A UMP-CMP kinase; ploop, 94.3 0.027 9.1E-07 53.7 4.0 25 106-130 4-28 (196)
323 1e6c_A Shikimate kinase; phosp 94.3 0.022 7.7E-07 53.0 3.4 25 106-130 3-27 (173)
324 1ukz_A Uridylate kinase; trans 94.3 0.027 9.2E-07 54.2 4.0 26 104-129 14-39 (203)
325 2j37_W Signal recognition part 94.3 0.35 1.2E-05 53.0 13.3 38 104-143 100-137 (504)
326 2j41_A Guanylate kinase; GMP, 94.3 0.026 9E-07 54.3 3.9 25 105-129 6-30 (207)
327 3e70_C DPA, signal recognition 94.3 0.47 1.6E-05 49.0 13.6 57 104-162 128-185 (328)
328 3a00_A Guanylate kinase, GMP k 94.3 0.02 6.9E-07 54.2 3.0 25 106-130 2-26 (186)
329 3ney_A 55 kDa erythrocyte memb 94.3 0.029 9.8E-07 53.3 4.0 27 104-130 18-44 (197)
330 3cm0_A Adenylate kinase; ATP-b 94.3 0.027 9.4E-07 53.2 3.9 26 105-130 4-29 (186)
331 1um8_A ATP-dependent CLP prote 94.3 0.041 1.4E-06 58.8 5.7 25 106-130 73-97 (376)
332 2bdt_A BH3686; alpha-beta prot 94.3 0.025 8.5E-07 53.7 3.6 22 106-127 3-24 (189)
333 2pt5_A Shikimate kinase, SK; a 94.2 0.029 1E-06 51.9 3.9 24 107-130 2-25 (168)
334 1gvn_B Zeta; postsegregational 94.2 0.04 1.4E-06 56.2 5.2 26 104-129 32-57 (287)
335 2cdn_A Adenylate kinase; phosp 94.2 0.033 1.1E-06 53.4 4.4 26 105-130 20-45 (201)
336 1ex7_A Guanylate kinase; subst 94.2 0.024 8.1E-07 53.4 3.2 25 106-130 2-26 (186)
337 3fwy_A Light-independent proto 94.2 0.03 1E-06 57.8 4.3 41 103-145 46-86 (314)
338 2if2_A Dephospho-COA kinase; a 94.2 0.024 8.2E-07 54.6 3.4 22 106-127 2-23 (204)
339 2bwj_A Adenylate kinase 5; pho 94.2 0.027 9.2E-07 53.9 3.8 26 105-130 12-37 (199)
340 1uf9_A TT1252 protein; P-loop, 94.2 0.028 9.5E-07 54.0 3.7 26 103-128 6-31 (203)
341 3cf2_A TER ATPase, transitiona 94.2 0.091 3.1E-06 61.0 8.5 93 83-195 476-581 (806)
342 3asz_A Uridine kinase; cytidin 94.1 0.03 1E-06 54.2 4.0 27 104-130 5-31 (211)
343 1ls1_A Signal recognition part 94.1 0.2 7E-06 51.1 10.2 88 104-193 97-189 (295)
344 2bbw_A Adenylate kinase 4, AK4 94.1 0.033 1.1E-06 55.5 4.1 26 105-130 27-52 (246)
345 1g5t_A COB(I)alamin adenosyltr 94.1 0.061 2.1E-06 50.6 5.7 112 106-223 29-164 (196)
346 2vli_A Antibiotic resistance p 94.1 0.022 7.7E-07 53.6 2.8 26 105-130 5-30 (183)
347 3rfe_A Platelet glycoprotein I 94.1 0.061 2.1E-06 47.3 5.4 50 491-542 12-65 (130)
348 1lvg_A Guanylate kinase, GMP k 94.1 0.024 8.4E-07 54.2 3.1 26 105-130 4-29 (198)
349 2pbr_A DTMP kinase, thymidylat 94.0 0.032 1.1E-06 53.0 3.9 24 107-130 2-25 (195)
350 4gp7_A Metallophosphoesterase; 94.0 0.025 8.4E-07 52.7 2.9 21 105-125 9-29 (171)
351 1aky_A Adenylate kinase; ATP:A 94.0 0.035 1.2E-06 54.1 4.1 26 105-130 4-29 (220)
352 2grj_A Dephospho-COA kinase; T 94.0 0.032 1.1E-06 52.9 3.7 26 104-129 11-36 (192)
353 3tlx_A Adenylate kinase 2; str 94.0 0.062 2.1E-06 53.3 6.0 27 104-130 28-54 (243)
354 2z0h_A DTMP kinase, thymidylat 94.0 0.098 3.3E-06 49.8 7.2 25 107-131 2-26 (197)
355 1uj2_A Uridine-cytidine kinase 94.0 0.033 1.1E-06 55.7 4.0 28 103-130 20-47 (252)
356 2r6a_A DNAB helicase, replicat 94.0 0.66 2.2E-05 50.6 14.7 50 105-157 203-252 (454)
357 2b8t_A Thymidine kinase; deoxy 94.0 0.032 1.1E-06 54.1 3.7 111 104-223 11-127 (223)
358 4e22_A Cytidylate kinase; P-lo 93.9 0.036 1.2E-06 55.3 4.1 27 104-130 26-52 (252)
359 1qf9_A UMP/CMP kinase, protein 93.9 0.032 1.1E-06 53.0 3.6 26 105-130 6-31 (194)
360 3cmu_A Protein RECA, recombina 93.9 0.11 3.7E-06 66.0 9.0 84 104-194 1426-1515(2050)
361 3vr4_D V-type sodium ATPase su 93.9 0.077 2.6E-06 56.7 6.6 100 96-195 141-259 (465)
362 2qt1_A Nicotinamide riboside k 93.9 0.032 1.1E-06 53.8 3.5 24 105-128 21-44 (207)
363 1nn5_A Similar to deoxythymidy 93.9 0.1 3.5E-06 50.5 7.2 32 105-137 9-40 (215)
364 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.036 1.2E-06 55.6 4.0 26 105-130 4-29 (260)
365 1rj9_A FTSY, signal recognitio 93.8 0.046 1.6E-06 56.0 4.7 29 104-132 101-129 (304)
366 1jjv_A Dephospho-COA kinase; P 93.8 0.032 1.1E-06 53.8 3.4 22 106-127 3-24 (206)
367 2wwf_A Thymidilate kinase, put 93.8 0.038 1.3E-06 53.4 3.9 32 105-137 10-41 (212)
368 1z6g_A Guanylate kinase; struc 93.7 0.033 1.1E-06 54.3 3.2 25 105-129 23-47 (218)
369 1znw_A Guanylate kinase, GMP k 93.7 0.04 1.4E-06 53.2 3.8 25 105-129 20-44 (207)
370 3fb4_A Adenylate kinase; psych 93.7 0.041 1.4E-06 53.4 3.9 24 107-130 2-25 (216)
371 1zd8_A GTP:AMP phosphotransfer 93.5 0.038 1.3E-06 54.2 3.4 26 105-130 7-32 (227)
372 1s96_A Guanylate kinase, GMP k 93.5 0.045 1.5E-06 53.2 3.9 27 104-130 15-41 (219)
373 1tue_A Replication protein E1; 93.5 0.059 2E-06 50.9 4.5 38 93-130 45-83 (212)
374 1zak_A Adenylate kinase; ATP:A 93.5 0.039 1.3E-06 53.9 3.4 26 105-130 5-30 (222)
375 2jeo_A Uridine-cytidine kinase 93.5 0.049 1.7E-06 54.1 4.2 26 104-129 24-49 (245)
376 2p5t_B PEZT; postsegregational 93.5 0.052 1.8E-06 54.2 4.4 26 105-130 32-57 (253)
377 3upu_A ATP-dependent DNA helic 93.5 0.12 4.2E-06 56.6 7.8 44 88-132 29-72 (459)
378 3k1j_A LON protease, ATP-depen 93.5 0.043 1.5E-06 62.6 4.2 50 80-131 37-86 (604)
379 1htw_A HI0065; nucleotide-bind 93.4 0.051 1.7E-06 49.7 3.8 27 103-129 31-57 (158)
380 3dl0_A Adenylate kinase; phosp 93.4 0.043 1.5E-06 53.3 3.5 23 107-129 2-24 (216)
381 2pez_A Bifunctional 3'-phospho 93.4 0.055 1.9E-06 50.7 4.1 27 105-131 5-31 (179)
382 1np6_A Molybdopterin-guanine d 93.4 0.055 1.9E-06 50.3 4.0 27 105-131 6-32 (174)
383 3nwj_A ATSK2; P loop, shikimat 93.3 0.042 1.4E-06 54.6 3.3 26 105-130 48-73 (250)
384 1m7g_A Adenylylsulfate kinase; 93.3 0.055 1.9E-06 52.3 4.1 27 104-130 24-50 (211)
385 1gtv_A TMK, thymidylate kinase 93.3 0.026 8.8E-07 54.8 1.7 26 106-131 1-26 (214)
386 2ffh_A Protein (FFH); SRP54, s 93.3 0.28 9.5E-06 52.6 9.9 37 105-143 98-134 (425)
387 2f1r_A Molybdopterin-guanine d 93.3 0.031 1.1E-06 51.9 2.1 27 106-132 3-29 (171)
388 2i3b_A HCR-ntpase, human cance 93.2 0.048 1.6E-06 51.6 3.4 25 106-130 2-26 (189)
389 2v54_A DTMP kinase, thymidylat 93.2 0.055 1.9E-06 51.9 3.8 25 105-129 4-28 (204)
390 3ake_A Cytidylate kinase; CMP 93.2 0.055 1.9E-06 52.1 3.9 25 106-130 3-27 (208)
391 4a1f_A DNAB helicase, replicat 93.2 0.26 8.8E-06 51.1 9.1 51 105-159 46-96 (338)
392 3sr0_A Adenylate kinase; phosp 93.1 0.058 2E-06 51.8 3.9 24 107-130 2-25 (206)
393 1cr0_A DNA primase/helicase; R 93.1 0.17 5.7E-06 51.9 7.6 50 105-158 35-85 (296)
394 3r20_A Cytidylate kinase; stru 93.1 0.059 2E-06 52.6 3.9 26 105-130 9-34 (233)
395 2c61_A A-type ATP synthase non 93.1 0.078 2.7E-06 57.0 5.0 100 96-195 142-260 (469)
396 3end_A Light-independent proto 93.1 0.13 4.3E-06 53.1 6.6 44 102-147 38-81 (307)
397 3d3q_A TRNA delta(2)-isopenten 93.0 0.054 1.8E-06 56.0 3.7 25 106-130 8-32 (340)
398 1g41_A Heat shock protein HSLU 93.0 0.052 1.8E-06 58.4 3.7 47 85-131 16-76 (444)
399 3p32_A Probable GTPase RV1496/ 93.0 0.12 4.2E-06 54.4 6.6 39 93-131 65-105 (355)
400 1vht_A Dephospho-COA kinase; s 92.9 0.064 2.2E-06 52.1 4.0 23 105-127 4-26 (218)
401 4eaq_A DTMP kinase, thymidylat 92.9 0.13 4.4E-06 50.4 6.1 28 104-131 25-52 (229)
402 2f6r_A COA synthase, bifunctio 92.9 0.057 2E-06 54.8 3.7 24 104-127 74-97 (281)
403 2xb4_A Adenylate kinase; ATP-b 92.9 0.065 2.2E-06 52.4 3.9 24 107-130 2-25 (223)
404 3be4_A Adenylate kinase; malar 92.9 0.061 2.1E-06 52.3 3.7 25 106-130 6-30 (217)
405 3lv8_A DTMP kinase, thymidylat 92.9 0.19 6.5E-06 49.2 7.2 37 105-142 27-63 (236)
406 1ak2_A Adenylate kinase isoenz 92.8 0.075 2.6E-06 52.3 4.3 26 105-130 16-41 (233)
407 3b9q_A Chloroplast SRP recepto 92.8 0.071 2.4E-06 54.6 4.2 28 105-132 100-127 (302)
408 1a7j_A Phosphoribulokinase; tr 92.7 0.046 1.6E-06 55.7 2.7 27 104-130 4-30 (290)
409 1e4v_A Adenylate kinase; trans 92.7 0.065 2.2E-06 51.9 3.6 24 107-130 2-25 (214)
410 2onk_A Molybdate/tungstate ABC 92.7 0.068 2.3E-06 52.7 3.7 24 106-129 25-48 (240)
411 4tmk_A Protein (thymidylate ki 92.6 0.22 7.6E-06 47.9 7.2 52 106-158 4-55 (213)
412 3rfe_A Platelet glycoprotein I 92.6 0.16 5.5E-06 44.6 5.7 36 488-523 32-68 (130)
413 3lnc_A Guanylate kinase, GMP k 92.6 0.046 1.6E-06 53.8 2.4 25 105-129 27-52 (231)
414 2q6t_A DNAB replication FORK h 92.5 0.61 2.1E-05 50.7 11.5 52 105-159 200-251 (444)
415 3ld9_A DTMP kinase, thymidylat 92.5 0.19 6.7E-06 48.6 6.7 56 103-158 19-74 (223)
416 3gqb_B V-type ATP synthase bet 92.5 0.093 3.2E-06 56.0 4.7 100 96-195 137-262 (464)
417 3crm_A TRNA delta(2)-isopenten 92.5 0.069 2.4E-06 54.8 3.6 25 106-130 6-30 (323)
418 1ypw_A Transitional endoplasmi 92.5 0.032 1.1E-06 65.7 1.2 49 83-131 476-537 (806)
419 1sq5_A Pantothenate kinase; P- 92.4 0.081 2.8E-06 54.6 4.1 28 103-130 78-105 (308)
420 3tif_A Uncharacterized ABC tra 92.3 0.076 2.6E-06 52.3 3.6 35 104-141 30-64 (235)
421 3b85_A Phosphate starvation-in 92.2 0.065 2.2E-06 51.5 2.9 24 105-128 22-45 (208)
422 3exa_A TRNA delta(2)-isopenten 92.2 0.074 2.5E-06 54.0 3.2 25 105-129 3-27 (322)
423 2eyu_A Twitching motility prot 92.2 0.14 4.8E-06 51.2 5.3 28 104-131 24-51 (261)
424 2cbz_A Multidrug resistance-as 92.0 0.077 2.6E-06 52.3 3.2 26 105-130 31-56 (237)
425 2og2_A Putative signal recogni 92.0 0.11 3.6E-06 54.5 4.4 28 105-132 157-184 (359)
426 2pcj_A ABC transporter, lipopr 92.0 0.071 2.4E-06 52.1 2.9 25 105-129 30-54 (224)
427 1zu4_A FTSY; GTPase, signal re 92.0 0.17 5.8E-06 52.2 5.9 38 104-143 104-141 (320)
428 3cmw_A Protein RECA, recombina 92.0 0.34 1.2E-05 60.7 9.5 84 105-195 732-821 (1706)
429 2zts_A Putative uncharacterize 92.0 0.33 1.1E-05 48.0 8.0 48 105-156 30-78 (251)
430 1b0u_A Histidine permease; ABC 91.9 0.081 2.8E-06 53.0 3.3 26 104-129 31-56 (262)
431 1q3t_A Cytidylate kinase; nucl 91.9 0.11 3.8E-06 51.2 4.2 27 104-130 15-41 (236)
432 1oix_A RAS-related protein RAB 91.9 0.089 3.1E-06 49.8 3.4 25 105-129 29-53 (191)
433 4edh_A DTMP kinase, thymidylat 91.9 0.35 1.2E-05 46.6 7.6 32 105-137 6-37 (213)
434 2v9p_A Replication protein E1; 91.8 0.1 3.4E-06 53.3 3.8 27 103-129 124-150 (305)
435 3a8t_A Adenylate isopentenyltr 91.7 0.069 2.4E-06 55.0 2.5 25 105-129 40-64 (339)
436 2zu0_C Probable ATP-dependent 91.7 0.1 3.5E-06 52.4 3.8 25 104-128 45-69 (267)
437 2olj_A Amino acid ABC transpor 91.7 0.089 3E-06 52.6 3.3 26 104-129 49-74 (263)
438 3gfo_A Cobalt import ATP-bindi 91.7 0.079 2.7E-06 53.4 2.9 24 105-128 34-57 (275)
439 3foz_A TRNA delta(2)-isopenten 91.7 0.1 3.5E-06 52.9 3.6 26 105-130 10-35 (316)
440 2d2e_A SUFC protein; ABC-ATPas 91.6 0.095 3.3E-06 52.1 3.4 24 105-128 29-52 (250)
441 2yhs_A FTSY, cell division pro 91.6 0.13 4.4E-06 55.9 4.5 29 104-132 292-320 (503)
442 1yrb_A ATP(GTP)binding protein 91.6 0.13 4.4E-06 51.5 4.4 26 105-130 14-39 (262)
443 3mfy_A V-type ATP synthase alp 91.6 0.27 9.3E-06 53.6 7.0 58 95-156 216-275 (588)
444 1mv5_A LMRA, multidrug resista 91.5 0.097 3.3E-06 51.8 3.3 26 104-129 27-52 (243)
445 2qe7_A ATP synthase subunit al 91.5 0.23 7.9E-06 53.7 6.3 97 95-195 151-265 (502)
446 4g1u_C Hemin import ATP-bindin 91.4 0.094 3.2E-06 52.6 3.1 34 105-141 37-70 (266)
447 1vpl_A ABC transporter, ATP-bi 91.4 0.1 3.5E-06 52.0 3.3 26 104-129 40-65 (256)
448 1ji0_A ABC transporter; ATP bi 91.4 0.089 3E-06 52.0 2.8 25 105-129 32-56 (240)
449 2dyk_A GTP-binding protein; GT 91.4 0.12 4.2E-06 47.0 3.7 23 106-128 2-24 (161)
450 2pze_A Cystic fibrosis transme 91.4 0.098 3.4E-06 51.2 3.1 26 105-130 34-59 (229)
451 1sgw_A Putative ABC transporte 91.4 0.084 2.9E-06 51.0 2.5 25 105-129 35-59 (214)
452 1ltq_A Polynucleotide kinase; 91.3 0.11 3.7E-06 53.4 3.6 23 106-128 3-25 (301)
453 1g6h_A High-affinity branched- 91.3 0.09 3.1E-06 52.5 2.8 25 105-129 33-57 (257)
454 2ghi_A Transport protein; mult 91.3 0.1 3.5E-06 52.2 3.2 24 105-128 46-69 (260)
455 2ff7_A Alpha-hemolysin translo 91.3 0.099 3.4E-06 51.8 3.1 25 105-129 35-59 (247)
456 3io3_A DEHA2D07832P; chaperone 91.3 0.32 1.1E-05 50.7 7.1 48 100-149 13-62 (348)
457 2f9l_A RAB11B, member RAS onco 91.3 0.12 4E-06 49.3 3.5 24 105-128 5-28 (199)
458 2wji_A Ferrous iron transport 91.3 0.12 4E-06 47.6 3.4 22 106-127 4-25 (165)
459 2ixe_A Antigen peptide transpo 91.2 0.1 3.6E-06 52.5 3.2 26 104-129 44-69 (271)
460 1g8f_A Sulfate adenylyltransfe 91.2 0.2 6.7E-06 55.0 5.5 45 87-131 375-421 (511)
461 3cmu_A Protein RECA, recombina 91.2 0.52 1.8E-05 59.9 9.9 84 105-195 383-472 (2050)
462 4gzl_A RAS-related C3 botulinu 91.1 0.12 4.1E-06 49.5 3.4 37 92-128 17-53 (204)
463 3vr4_A V-type sodium ATPase ca 91.0 0.66 2.2E-05 50.8 9.3 58 95-156 221-280 (600)
464 1svm_A Large T antigen; AAA+ f 91.0 0.13 4.6E-06 54.2 3.9 27 103-129 167-193 (377)
465 2yz2_A Putative ABC transporte 91.0 0.11 3.9E-06 52.1 3.2 25 105-129 33-57 (266)
466 2ck3_A ATP synthase subunit al 91.0 0.36 1.2E-05 52.3 7.2 100 96-195 152-273 (510)
467 2qi9_C Vitamin B12 import ATP- 91.0 0.11 3.6E-06 51.6 2.9 25 105-129 26-50 (249)
468 2r9v_A ATP synthase subunit al 90.9 0.2 6.7E-06 54.2 5.1 96 96-195 165-278 (515)
469 2r8r_A Sensor protein; KDPD, P 90.9 0.37 1.3E-05 46.4 6.5 37 107-145 8-44 (228)
470 2ged_A SR-beta, signal recogni 90.9 0.27 9.1E-06 46.4 5.6 25 104-128 47-71 (193)
471 2zej_A Dardarin, leucine-rich 90.9 0.12 4E-06 48.6 3.0 21 107-127 4-24 (184)
472 3sop_A Neuronal-specific septi 90.8 0.12 4.1E-06 52.0 3.3 24 107-130 4-27 (270)
473 3eph_A TRNA isopentenyltransfe 90.8 0.13 4.6E-06 54.1 3.6 25 106-130 3-27 (409)
474 2ihy_A ABC transporter, ATP-bi 90.8 0.11 3.8E-06 52.5 2.9 26 105-130 47-72 (279)
475 3zvl_A Bifunctional polynucleo 90.7 0.11 3.8E-06 56.0 3.0 27 103-129 256-282 (416)
476 2nq2_C Hypothetical ABC transp 90.7 0.11 3.8E-06 51.6 2.8 25 105-129 31-55 (253)
477 1nlf_A Regulatory protein REPA 90.5 0.13 4.4E-06 52.2 3.2 26 105-130 30-55 (279)
478 1q57_A DNA primase/helicase; d 90.5 0.68 2.3E-05 51.3 9.3 52 105-159 242-293 (503)
479 3iqw_A Tail-anchored protein t 90.5 0.38 1.3E-05 49.9 6.7 48 101-150 12-59 (334)
480 2ocp_A DGK, deoxyguanosine kin 90.5 0.15 5.2E-06 50.4 3.6 26 105-130 2-27 (241)
481 2qmh_A HPR kinase/phosphorylas 90.4 0.12 3.9E-06 48.7 2.4 25 105-129 34-58 (205)
482 3cwq_A Para family chromosome 90.4 0.44 1.5E-05 45.7 6.7 42 107-151 2-44 (209)
483 3qfl_A MLA10; coiled-coil, (CC 90.4 0.06 2E-06 46.1 0.4 21 4-24 62-82 (115)
484 3bgw_A DNAB-like replicative h 90.4 0.99 3.4E-05 48.9 10.2 50 105-158 197-246 (444)
485 3gmt_A Adenylate kinase; ssgci 90.3 0.17 5.9E-06 49.0 3.7 26 105-130 8-33 (230)
486 2v3c_C SRP54, signal recogniti 90.3 0.13 4.5E-06 55.4 3.2 37 105-143 99-135 (432)
487 1z2a_A RAS-related protein RAB 90.3 0.16 5.4E-06 46.6 3.3 24 105-128 5-28 (168)
488 3hjn_A DTMP kinase, thymidylat 90.3 0.59 2E-05 44.3 7.4 50 107-158 2-51 (197)
489 1cp2_A CP2, nitrogenase iron p 90.2 0.34 1.2E-05 48.6 6.0 39 106-146 2-40 (269)
490 2qtf_A Protein HFLX, GTP-bindi 90.2 0.31 1.1E-05 51.3 5.8 25 104-128 178-202 (364)
491 3tui_C Methionine import ATP-b 90.1 0.18 6E-06 52.8 3.8 26 104-129 53-78 (366)
492 2ce2_X GTPase HRAS; signaling 90.1 0.15 5.3E-06 46.4 3.1 22 107-128 5-26 (166)
493 3nh6_A ATP-binding cassette SU 90.1 0.13 4.4E-06 52.6 2.7 26 104-129 79-104 (306)
494 2wjg_A FEOB, ferrous iron tran 90.0 0.17 5.8E-06 47.5 3.4 23 106-128 8-30 (188)
495 3oaa_A ATP synthase subunit al 90.0 1.2 4E-05 48.1 10.0 96 96-195 152-265 (513)
496 3fvq_A Fe(3+) IONS import ATP- 90.0 0.17 5.7E-06 52.9 3.5 26 105-130 30-55 (359)
497 2vp4_A Deoxynucleoside kinase; 90.0 0.12 4.1E-06 50.7 2.3 25 104-128 19-43 (230)
498 1u0j_A DNA replication protein 90.0 0.33 1.1E-05 48.1 5.4 37 93-129 90-128 (267)
499 2pjz_A Hypothetical protein ST 89.9 0.15 5E-06 51.1 2.9 25 105-129 30-54 (263)
500 3con_A GTPase NRAS; structural 89.9 0.17 5.9E-06 47.6 3.3 23 106-128 22-44 (190)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.6e-46 Score=429.17 Aligned_cols=311 Identities=12% Similarity=0.071 Sum_probs=237.6
Q ss_pred cchHHHHHHHHHHhCCC---CccEEEEEcCCCCcHHHHHHHHHH--HhhccCCCCcEEEEEeCCCc--cHHHHHHHHHHH
Q 003192 87 DSRISTFKDITNALSNP---SVDMIGICGMGGIGKTMLVKEIAR--QVKGHKLFDEVVFVDVPQIP--DIKKMQGQIADE 159 (840)
Q Consensus 87 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~ 159 (840)
+||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +.+.+.+|+.++||++++.+ ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 39999999999999633 579999999999999999999998 46677889999999999985 899999999999
Q ss_pred hCCCcc---c-c----ChhhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcchhhcccC-
Q 003192 160 LGLFLC---E-E----SESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLSREMD- 230 (840)
Q Consensus 160 l~~~~~---~-~----~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v~~~~~~- 230 (840)
++.... . . +.......+.+.+..+||+||||||||+..++ .+ + ..+||+||||||++.++.. ++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~-~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNA-ASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGG-CCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHH-cCC
Confidence 986521 1 1 11223556666666334999999999997754 21 1 1279999999999999743 43
Q ss_pred ccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhccCHHHHHHHHHHhcCCCCC
Q 003192 231 SEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREENLFEWKNALLELKRPSWR 310 (840)
Q Consensus 231 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~ 310 (840)
...+|++++|+.++||+||.++++... ..+..++++++|+++|+|+||||+++|+.++.+. .+|...+.... ..
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l---~~ 357 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKL---ES 357 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHH---HH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHh---hc
Confidence 446799999999999999999965432 2467788999999999999999999999998764 23333333211 00
Q ss_pred CCcchhhhhhhhhhccccCCCchhhHHHHH-----------HhhccCCcCCCCHHHHHHHHhhc--ccccccccHHHHHH
Q 003192 311 NFSGVQAAACSTIELSFNFLTGEDLKSTLL-----------LCSLMGYTYHASMLDLLKYGMGM--GLFKDVNTMEEARD 377 (840)
Q Consensus 311 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~a~fp~~~~~~~~~li~~wiae--g~i~~~~~~~~~~~ 377 (840)
. ....+.+++.+||++||++ +|.||+ |||+||+++.++ +++|+|+ ||+.........++
T Consensus 358 ~---~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 358 R---GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp H---CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred c---cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 0 1345788999999999988 999999 999999999998 8899999 99965321111233
Q ss_pred hHHHHHHHhhhcccccccc--cCCcEEechHHHHHHHHHhhccc
Q 003192 378 RACPLVHKLKACSLLLDSH--ISEMFAMHDIVRDVAISIASRDQ 419 (840)
Q Consensus 378 ~~~~~~~~L~~~~l~~~~~--~~~~~~mHdlv~~~~~~i~~~e~ 419 (840)
.+. ++++|+++||++... ....|+|||+||++|++++.+++
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 334 899999999998653 34579999999999999887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.2e-38 Score=360.41 Aligned_cols=283 Identities=18% Similarity=0.198 Sum_probs=223.0
Q ss_pred ccchHHHHHHHHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCc-EEEEEeCCCccHHHHHHHHHHHhCC-
Q 003192 86 FDSRISTFKDITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDE-VVFVDVPQIPDIKKMQGQIADELGL- 162 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~- 162 (840)
.+||+.++++|.++|.+ ++.++|+|+||||+||||||+++|++.+...+|+. ++|+++++.++...++..|++.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999874 55899999999999999999999997766667986 9999999999988888888775421
Q ss_pred --Ccccc-----Ch----hhHHHHHHHHHH--cCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcchhhccc
Q 003192 163 --FLCEE-----SE----SGRARRLYARMK--EEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLSREM 229 (840)
Q Consensus 163 --~~~~~-----~~----~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v~~~~~ 229 (840)
..... .. ......+.+.+. .++|+||||||||+.+.|+.+ .+||+||||||++.++.. +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHh-c
Confidence 11100 01 112333444331 368999999999998888764 268999999999988632 3
Q ss_pred CccceEEcc------CCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhcc--CHHHHHHHH
Q 003192 230 DSEINFLVG------ILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREE--NLFEWKNAL 301 (840)
Q Consensus 230 ~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~--~~~~w~~~l 301 (840)
.....|.++ +|+.+|||+||.+.+ ... ..++..++ |+|+||||+++|+.|+++ +..+|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-
Confidence 333457777 999999999999883 221 22233444 999999999999999977 77888752
Q ss_pred HHhcCCCCCCCcchhhhhhhhhhccccCCCchhh-HHHHHHhhccCCcCCCCHHHHHHHHhhcccccccccHHHHHHhHH
Q 003192 302 LELKRPSWRNFSGVQAAACSTIELSFNFLTGEDL-KSTLLLCSLMGYTYHASMLDLLKYGMGMGLFKDVNTMEEARDRAC 380 (840)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~a~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~ 380 (840)
....+..++++||+.||++ . |.||++||+||+++.|+.+.++.+|+++|- + .+.
T Consensus 351 -------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe 405 (1221)
T 1vt4_I 351 -------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVM 405 (1221)
T ss_dssp -------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHH
T ss_pred -------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----HHH
Confidence 1357899999999999998 7 999999999999999999999999999871 1 255
Q ss_pred HHHHHhhhcccccccccCCcEEechHHHHHHH
Q 003192 381 PLVHKLKACSLLLDSHISEMFAMHDIVRDVAI 412 (840)
Q Consensus 381 ~~~~~L~~~~l~~~~~~~~~~~mHdlv~~~~~ 412 (840)
.++++|+++||++..+....|+|||++++++.
T Consensus 406 ~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 68999999999987655678999999998663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-36 Score=384.22 Aligned_cols=315 Identities=21% Similarity=0.256 Sum_probs=245.9
Q ss_pred ccCCcccccchHHHHHHHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHhhc-cC-CCCcEEEEEeCCCcc--HHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQVKG-HK-LFDEVVFVDVPQIPD--IKKM 152 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~-~F~~~~wv~vs~~~~--~~~~ 152 (840)
.|.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++... .. +|+.++||++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 45667779999999999999995 456899999999999999999999987533 22 457888999998543 4445
Q ss_pred HHHHHHHhCCCccc-----cChhhHHHHHHHHHHc-CCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcchhh
Q 003192 153 QGQIADELGLFLCE-----ESESGRARRLYARMKE-EKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVLS 226 (840)
Q Consensus 153 ~~~i~~~l~~~~~~-----~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v~~ 226 (840)
+..++..+...... .........+...+.. ++|+||||||||+..+|..+ .+|++||||||++.++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 66677777654321 1122233333333331 34999999999998777654 57899999999999874
Q ss_pred cccCccceEEccC-CCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhccCHHHHHHHHHHhc
Q 003192 227 REMDSEINFLVGI-LSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREENLFEWKNALLELK 305 (840)
Q Consensus 227 ~~~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~w~~~l~~l~ 305 (840)
..+.....+.+++ |+.++|++||...++.. .+...+.+++|+++|+|+||||+++|++|+.+. ..|+..++.+.
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~ 346 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQ 346 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHH
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHh
Confidence 4466677899996 99999999999886322 234556799999999999999999999999775 47999999887
Q ss_pred CCCCCCC----cchhhhhhhhhhccccCCCchhhHHHHHHhhccCCcCCCCHHHHHHHHhhcccccccccHHHHHHhHHH
Q 003192 306 RPSWRNF----SGVQAAACSTIELSFNFLTGEDLKSTLLLCSLMGYTYHASMLDLLKYGMGMGLFKDVNTMEEARDRACP 381 (840)
Q Consensus 306 ~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~ 381 (840)
......+ ....+.+..++.+||+.|+++ .|.||+|||+||+++.|+++.++.+|.+++ +.+..
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~ 413 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVED 413 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHH
Confidence 6554432 122357899999999999998 899999999999999999999999997752 34456
Q ss_pred HHHHhhhcccccccccC--CcEEechHHHHHHHHHhhcc
Q 003192 382 LVHKLKACSLLLDSHIS--EMFAMHDIVRDVAISIASRD 418 (840)
Q Consensus 382 ~~~~L~~~~l~~~~~~~--~~~~mHdlv~~~~~~i~~~e 418 (840)
++++|+++||++..... ..|+|||+||++++..+.++
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 89999999999865322 35999999999999887654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=9.8e-34 Score=329.07 Aligned_cols=309 Identities=23% Similarity=0.293 Sum_probs=231.6
Q ss_pred ccCCcccccchHHHHHHHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHhhc-cCCC-CcEEEEEeCCCccHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQVKG-HKLF-DEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~ 154 (840)
.|..+..|+||+.++++|.++|. .++.++|+|+||||+||||||+.++++... ..+| +.++|++++.. +...+..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 45667789999999999999997 356789999999999999999999987643 4458 58999999876 3333333
Q ss_pred HH---HHHhCCCc-----cccChhhHHHHHHHHHHc-CCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcchh
Q 003192 155 QI---ADELGLFL-----CEESESGRARRLYARMKE-EKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGVL 225 (840)
Q Consensus 155 ~i---~~~l~~~~-----~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v~ 225 (840)
.+ +..++... ...........+.+.+.+ .+++||||||||+...++.+ .+|++||||||++.++
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHH
Confidence 33 44554211 111222344455555553 26899999999987665532 5689999999999876
Q ss_pred hcccCccceEEc---cCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHHhccCHHHHHHHHH
Q 003192 226 SREMDSEINFLV---GILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKALREENLFEWKNALL 302 (840)
Q Consensus 226 ~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~w~~~l~ 302 (840)
.... ...+++ ++|+.++|++||...++.. .....+.+.+|+++|+|+||||.++|+.++... .+|..+++
T Consensus 271 ~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 271 DSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp TTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 3222 234554 5899999999999886431 223345789999999999999999999998763 36998888
Q ss_pred HhcCCCCCCC----cchhhhhhhhhhccccCCCchhhHHHHHHhhccCCcCCCCHHHHHHHHhhcccccccccHHHHHHh
Q 003192 303 ELKRPSWRNF----SGVQAAACSTIELSFNFLTGEDLKSTLLLCSLMGYTYHASMLDLLKYGMGMGLFKDVNTMEEARDR 378 (840)
Q Consensus 303 ~l~~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~ 378 (840)
.+.......+ ......+..++..||+.||++ .|.||++||+||+++.++...+...|.+++ ..
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~ 410 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------------EE 410 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HH
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------------HH
Confidence 8765543221 122457889999999999998 799999999999999999999999996541 22
Q ss_pred HHHHHHHhhhcccccccc--cCCcEEechHHHHHHHHHh
Q 003192 379 ACPLVHKLKACSLLLDSH--ISEMFAMHDIVRDVAISIA 415 (840)
Q Consensus 379 ~~~~~~~L~~~~l~~~~~--~~~~~~mHdlv~~~~~~i~ 415 (840)
+..++++|+++||++... ....|+||+++|++++...
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 456899999999997542 2347999999999998874
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.1e-27 Score=279.88 Aligned_cols=133 Identities=25% Similarity=0.312 Sum_probs=111.9
Q ss_pred cccccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCc
Q 003192 437 DTLKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLR 513 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~ 513 (840)
+..+++++|++++|.+..++. .+ ++++|++|++++|.+.. +++..|.++++|++|++++|.+..+ |..|+++++|+
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 345789999999999987765 33 89999999999998754 4444588999999999999999877 77899999999
Q ss_pred EEEecCcccCCc--ccccCCCCCCEEeccCCCCC--CCcHHHhccCCCCEEecCCCCCCccc
Q 003192 514 TLCLDQSVLGDI--AVIGELKQLEILSLSSSDIE--HLPREIGRLSKLRLLDLTNCSKLKSI 571 (840)
Q Consensus 514 ~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~c~~l~~l 571 (840)
+|++++|.++.+ ..++++++|++|++++|.++ .+|..++++++|++|++++|. +..+
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~ 168 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTI 168 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEE
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceec
Confidence 999999998773 56999999999999999988 578999999999999999854 4443
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5.5e-28 Score=288.80 Aligned_cols=378 Identities=16% Similarity=0.142 Sum_probs=229.9
Q ss_pred ccccEEeecccCCC-CCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCC-CCchhhhcccCCcEEEe
Q 003192 440 KFCTAISLHKCDVN-ELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLL-SLPSSLHLLVNLRTLCL 517 (840)
Q Consensus 440 ~~~~~l~l~~~~~~-~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~L~L 517 (840)
++++.|++++|.+. .+|. ..+++|++|++++|.+.+.+|..++..+++|++|++++|.+. .+|..++++++|++|++
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp SSCCEEECCSSCCEESCCC-CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCccCc-cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence 44555555555442 2222 245555555555555544555543333466666666666665 45666666666666666
Q ss_pred cCcccCC--ccc-ccCCCCCCEEeccCCCCC-CCcHHHhccC-CCCEEecCCCCCCcccccccc--------ccccccc-
Q 003192 518 DQSVLGD--IAV-IGELKQLEILSLSSSDIE-HLPREIGRLS-KLRLLDLTNCSKLKSIPPNVE--------RLNIERS- 583 (840)
Q Consensus 518 ~~~~l~~--~~~-i~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~l~~c~~l~~lp~~l~--------~L~~~~~- 583 (840)
++|.+.. +.. ++++++|++|++++|.++ .+|..+.+++ +|++|++++|...+.+|..+. .|.+..+
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 6666542 222 666666666666666665 5666666665 666666666544333443322 2222211
Q ss_pred --cCChhhhhcCCCCCeEEEEeecCc-cCCCcc-ccccCcEEEEEEcCcC----CcCCCCCCccEEEEeecCcccchhhH
Q 003192 584 --NASLDELKHLSRLTTLEIHIQGAK-ILPRGL-FSKKLERYKILIGDEW----DWHGKYETSRTLKLMLNTRTCLENGT 655 (840)
Q Consensus 584 --~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~----~~~~~~~~l~~l~L~~~~~~~~~~~~ 655 (840)
+..+..++++++|+.|+++.|.+. .+|..+ .+++|+.|++..+... ......+.++.|.+..+......+..
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 485 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH
Confidence 234456677777777777777765 344444 5667777777554422 12334566777777766665444444
Q ss_pred HHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceecccccccccccccc-
Q 003192 656 IMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNG- 734 (840)
Q Consensus 656 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~- 734 (840)
+..+++|+.|++++|.....+|..+ ..+++|++|++++|.....++. ....+++|+.|++++++-...++..
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~-----~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPA-----ELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCG-----GGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred HhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcCCH-----HHcCCCCCCEEECCCCccCCcCChHH
Confidence 5557777777777777666666666 6677777777777765444432 2245677777777765433232210
Q ss_pred ------------------------------------------------------------------ccCcccCCCCCEEE
Q 003192 735 ------------------------------------------------------------------RLTAASFCNLGIIK 748 (840)
Q Consensus 735 ------------------------------------------------------------------~~~~~~l~~L~~L~ 748 (840)
+...+.+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 11123457788888
Q ss_pred EecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccCccccccccee
Q 003192 749 VGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNEITFSKLKSL 828 (840)
Q Consensus 749 l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L 828 (840)
+++| +++...|. .+..+++|+.|++++| .++..++. .+.+++.|+.|++++|...+.+|..+..+++|++|
T Consensus 639 Ls~N-~l~g~ip~-~l~~l~~L~~L~Ls~N-~l~g~ip~------~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 639 MSYN-MLSGYIPK-EIGSMPYLFILNLGHN-DISGSIPD------EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp CCSS-CCBSCCCG-GGGGCTTCCEEECCSS-CCCSCCCG------GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred CcCC-cccccCCH-HHhccccCCEEeCcCC-ccCCCCCh------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 8885 56655442 4678888888888885 55544433 33477888888888888888888888888888888
Q ss_pred ecCCCC
Q 003192 829 SLSYLP 834 (840)
Q Consensus 829 ~L~~cp 834 (840)
+|++++
T Consensus 710 ~ls~N~ 715 (768)
T 3rgz_A 710 DLSNNN 715 (768)
T ss_dssp ECCSSE
T ss_pred ECcCCc
Confidence 888873
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=273.66 Aligned_cols=376 Identities=17% Similarity=0.191 Sum_probs=233.4
Q ss_pred cccccccEEeecccCCCCCCCc-C-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCc
Q 003192 437 DTLKFCTAISLHKCDVNELPEE-L-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLR 513 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~ 513 (840)
..+..+++|++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|++++|.+..+| ..|+.+++|+
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 3456789999999988776643 3 8899999999988774 455556888999999999999988765 5788999999
Q ss_pred EEEecCcccCCcc--cccCCCCCCEEeccCCCCCC--CcHHHhccCCCCEEecCCCCCCcccc-ccccc----------c
Q 003192 514 TLCLDQSVLGDIA--VIGELKQLEILSLSSSDIEH--LPREIGRLSKLRLLDLTNCSKLKSIP-PNVER----------L 578 (840)
Q Consensus 514 ~L~L~~~~l~~~~--~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~c~~l~~lp-~~l~~----------L 578 (840)
+|++++|.++.++ .++++++|++|++++|.++. +|..++++++|++|++++|. +..++ ..+.. +
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhc
Confidence 9999999888743 48889999999999998884 68888999999999998853 43332 21111 0
Q ss_pred ccc-----------------------------------------------------------------------------
Q 003192 579 NIE----------------------------------------------------------------------------- 581 (840)
Q Consensus 579 ~~~----------------------------------------------------------------------------- 581 (840)
.+.
T Consensus 183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 000
Q ss_pred -------cccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCc-CCCCCCccEEEEe---------
Q 003192 582 -------RSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDW-HGKYETSRTLKLM--------- 644 (840)
Q Consensus 582 -------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~l~~l~L~--------- 644 (840)
..+..+..+..+++|+.|+++.|.+..+|..+...+|+.|++..+..... ....+.++.+.+.
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence 00111234566788888888888888887766222777777765442211 1123344444444
Q ss_pred -------------ecCcccch--hhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCc
Q 003192 645 -------------LNTRTCLE--NGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGV 709 (840)
Q Consensus 645 -------------~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 709 (840)
.+...... ...+..+++|+.|++++|.... ++..+ ..+++|++|++++|.... . ....
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~--~~l~~L~~L~l~~n~l~~-~---~~~~ 415 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF--LGLEQLEHLDFQHSNLKQ-M---SEFS 415 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEE--ETCTTCCEEECTTSEEES-C---TTSC
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccc--cccCCCCEEEccCCcccc-c---cchh
Confidence 33332221 1223334555555555543322 22222 445556666665543111 0 0111
Q ss_pred cCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCc--ccccHHHhhhcccCcEEEEcccccchhhccc
Q 003192 710 ACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLK--SILSVSIARGLQQLQVIDVTECKSMEVILGT 787 (840)
Q Consensus 710 ~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~--~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 787 (840)
....+++|+.|+++++...... +.....+++|+.|++++|. +. .+|. .+..+++|++|++++| .+..+.+.
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~~p~--~~~~l~~L~~L~l~~n-~l~~~~~~ 488 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAF---NGIFNGLSSLEVLKMAGNS-FQENFLPD--IFTELRNLTFLDLSQC-QLEQLSPT 488 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECC---TTTTTTCTTCCEEECTTCE-EGGGEECS--CCTTCTTCCEEECTTS-CCCEECTT
T ss_pred hhhcCCCCCEEeCcCCcccccc---hhhhhcCCcCcEEECcCCc-Cccccchh--hhhcccCCCEEECCCC-ccccCChh
Confidence 2345666777777665422222 2334456777777777754 43 2332 4566777777777775 34443222
Q ss_pred cccccccchhhcccccccccccccccccccCcccccccceeecCCCC
Q 003192 788 EEERISSNQEIELITPRGIQKCSLTAEAATNEITFSKLKSLSLSYLP 834 (840)
Q Consensus 788 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~cp 834 (840)
.+..+++|+.|++++|...+..|..+..+++|+.|+++++|
T Consensus 489 ------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 489 ------AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 23466778888888887666555667778888888888754
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=6.1e-28 Score=281.65 Aligned_cols=112 Identities=15% Similarity=0.282 Sum_probs=59.0
Q ss_pred CCCCceEEEecCCCCCCC-----------------CChhhhc--CCCceeEEEecCCcCC-CCchhhhcccCCcEEEecC
Q 003192 460 ECPQLKFFYMYPKDPALK-----------------IPDKFFA--GMIELRVLDLTKMHLL-SLPSSLHLLVNLRTLCLDQ 519 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~L~L~~ 519 (840)
++++|++|++++|.+.+. +|.. ++ ++++|++|++++|.+. .+|..++++++|++|++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 455555555555555442 4443 34 5555555555555543 4455555555555555555
Q ss_pred cc-cCC---cccccCC------CCCCEEeccCCCCCCCcH--HHhccCCCCEEecCCCCCCcccc
Q 003192 520 SV-LGD---IAVIGEL------KQLEILSLSSSDIEHLPR--EIGRLSKLRLLDLTNCSKLKSIP 572 (840)
Q Consensus 520 ~~-l~~---~~~i~~L------~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lp 572 (840)
|. ++. |..++++ ++|++|++++|.++.+|. .++++++|++|++++|...+.+|
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 55 442 2334443 555555555555555555 55555555555555543222455
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.6e-27 Score=282.31 Aligned_cols=314 Identities=14% Similarity=0.109 Sum_probs=149.8
Q ss_pred CCCceeEEEecCCcCC-CCchhhhcccCCcEEEecCcc-cCC---cccccCCC-------CCCEEeccCCCCCCCcH--H
Q 003192 485 GMIELRVLDLTKMHLL-SLPSSLHLLVNLRTLCLDQSV-LGD---IAVIGELK-------QLEILSLSSSDIEHLPR--E 550 (840)
Q Consensus 485 ~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~L~L~~~~-l~~---~~~i~~L~-------~L~~L~L~~~~l~~lp~--~ 550 (840)
++++|++|+|++|.+. .+|..++++++|++|+|++|. ++. |..+++++ +|++|++++|.++.+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 4555555555554433 344445555555555555554 432 22233222 55555555555544544 4
Q ss_pred HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCcc-cccc-CcEEEEEEcCc
Q 003192 551 IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGL-FSKK-LERYKILIGDE 628 (840)
Q Consensus 551 i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~ 628 (840)
++++++|++|++++| .+..+| .++.+++|+.|++++|.+..+|..+ .+.+ |+.|++..+..
T Consensus 569 l~~L~~L~~L~Ls~N-~l~~lp----------------~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHN-KVRHLE----------------AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp HTTCTTCCEEECTTS-CCCBCC----------------CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred hhcCCCCCEEECCCC-Ccccch----------------hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence 455555555555543 233444 3455566666666666666555544 4444 66666554432
Q ss_pred CCc---CCCC--CCccEEEEeecCcccchhhHH---H--hhcccceeeecccccchhhcccccccccCCCcEEEeecCCC
Q 003192 629 WDW---HGKY--ETSRTLKLMLNTRTCLENGTI---M--QLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPY 698 (840)
Q Consensus 629 ~~~---~~~~--~~l~~l~L~~~~~~~~~~~~~---~--~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 698 (840)
... .... ..++.|.+..|......+.+. . .+++|+.|++++|... .++..+ ...+++|+.|+|++|.
T Consensus 632 ~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~-~~~l~~L~~L~Ls~N~- 708 (876)
T 4ecn_A 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTEL-FATGSPISTIILSNNL- 708 (876)
T ss_dssp CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH-HHTTCCCSEEECCSCC-
T ss_pred CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHH-HccCCCCCEEECCCCc-
Confidence 111 1111 124555555444332211111 0 1235666666665433 233222 1345666666666653
Q ss_pred cceeecCCCCcc---CCCCCccceeccccccccccccccccCcc--cCCCCCEEEEecCCCCcccccHHHhhhcccCcEE
Q 003192 699 ILCIVDSVEGVA---CDAFPLLESLFLHNLTNLEKICNGRLTAA--SFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVI 773 (840)
Q Consensus 699 l~~l~~~~~~~~---~~~~~~L~~L~l~~~~~l~~i~~~~~~~~--~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L 773 (840)
+..++....... ...+++|+.|+|+++ .+..+ +.... .+++|+.|++++| +++.+|. .+..+++|+.|
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l---p~~l~~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L 781 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL---SDDFRATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQLKAF 781 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC---CGGGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCTTCCEE
T ss_pred CCccChHHhccccccccccCCccEEECCCC-CCccc---hHHhhhccCCCcCEEEeCCC-CCCccch--hhhcCCCCCEE
Confidence 223332211100 112336666666664 44444 22232 5666666666663 4555543 34566666666
Q ss_pred EEcccc-----cchhhccccccccccchhhcccccccccccccccccccCcccccccceeecCCCC
Q 003192 774 DVTECK-----SMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNEITFSKLKSLSLSYLP 834 (840)
Q Consensus 774 ~l~~c~-----~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~cp 834 (840)
++++|+ .+...+ +..+.++++|+.|++++|.. +.+|..+. ++|+.|+|++||
T Consensus 782 ~Ls~N~~ls~N~l~~~i------p~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQW------PTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp ECCCCBCTTCCBCCCCC------CTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred ECCCCCCcccccccccC------hHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 666533 111111 12234566666666666665 56665543 566666666665
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.1e-26 Score=271.39 Aligned_cols=377 Identities=17% Similarity=0.198 Sum_probs=204.1
Q ss_pred cccccEEeecccCCCCC-CCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEE
Q 003192 439 LKFCTAISLHKCDVNEL-PEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTL 515 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L 515 (840)
.+++++|++++|.+..+ |..+ ++++|++|++++|.+....|. .|+++++|++|++++|.+..+ |..++++++|++|
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence 34555555555555443 2222 555566666655555432232 355566666666666665554 3455566666666
Q ss_pred EecCcccCCc--ccccCCCCCCEEeccCCCCCCC-cHHHhccCCCC--EEecCCCCCCcccccccc--------------
Q 003192 516 CLDQSVLGDI--AVIGELKQLEILSLSSSDIEHL-PREIGRLSKLR--LLDLTNCSKLKSIPPNVE-------------- 576 (840)
Q Consensus 516 ~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~--~L~l~~c~~l~~lp~~l~-------------- 576 (840)
++++|.+..+ +.+..+++|++|++++|.++.+ |..++.+++|+ .|++++|. +..+++...
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC-CCEECTTTTTTCEEEEEECTTCS
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc-cCccChhHhhhccccccccCCch
Confidence 6666665542 4444466666666666666644 44466666666 66666643 332222110
Q ss_pred --------------------------------------------cccccc---ccCChhhhhcCCCCCeEEEEeecCccC
Q 003192 577 --------------------------------------------RLNIER---SNASLDELKHLSRLTTLEIHIQGAKIL 609 (840)
Q Consensus 577 --------------------------------------------~L~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~ 609 (840)
.+.+.. .......++++++|+.|++++|.+..+
T Consensus 214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l 293 (606)
T 3t6q_A 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293 (606)
T ss_dssp CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC
T ss_pred hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC
Confidence 000000 011122366777888888888888877
Q ss_pred CCcc-ccccCcEEEEEEcCcCC----cCCCCCCccEEEEeecCcc-cchhhHHHhhcccceeeecccccchhh--ccccc
Q 003192 610 PRGL-FSKKLERYKILIGDEWD----WHGKYETSRTLKLMLNTRT-CLENGTIMQLKGIEDLYLGELQDVKNV--LNELD 681 (840)
Q Consensus 610 ~~~~-~~~~L~~L~l~~~~~~~----~~~~~~~l~~l~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~ 681 (840)
|..+ .+++|+.|++..+.... .....+.++.+.+..+... ..+...+..+++|+.|++++|...... +..+
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~- 372 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL- 372 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT-
T ss_pred ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc-
Confidence 7765 56777777776544221 2345566777777765443 344444556777777777776544322 2223
Q ss_pred ccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccH
Q 003192 682 AEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSV 761 (840)
Q Consensus 682 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~ 761 (840)
..+++|++|++++|... .++. .....+++|+.|+++++......+ +.....+++|+.|++++| .+...++
T Consensus 373 -~~l~~L~~L~l~~n~l~-~~~~----~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~- 442 (606)
T 3t6q_A 373 -RNLSHLQSLNLSYNEPL-SLKT----EAFKECPQLELLDLAFTRLKVKDA--QSPFQNLHLLKVLNLSHS-LLDISSE- 442 (606)
T ss_dssp -TTCTTCCEEECCSCSCE-EECT----TTTTTCTTCSEEECTTCCEECCTT--CCTTTTCTTCCEEECTTC-CCBTTCT-
T ss_pred -ccCCCCCEEECCCCcCC-cCCH----HHhcCCccCCeEECCCCcCCCccc--chhhhCcccCCEEECCCC-ccCCcCH-
Confidence 56777777777776532 2211 122456677777777643222211 112345677777777774 3555443
Q ss_pred HHhhhcccCcEEEEcccccchhh-ccccccccccchhhcccccccccccccccccccCcccccccceeecCCC
Q 003192 762 SIARGLQQLQVIDVTECKSMEVI-LGTEEERISSNQEIELITPRGIQKCSLTAEAATNEITFSKLKSLSLSYL 833 (840)
Q Consensus 762 ~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~c 833 (840)
..+..+++|++|++++|. +... ++ ....+..+++|+.|++++|...+..|..+..+++|+.|+|+++
T Consensus 443 ~~~~~l~~L~~L~L~~n~-l~~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNH-FPKGNIQ----KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TTTTTCTTCCEEECTTCB-CGGGEEC----SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred HHHhCCCCCCEEECCCCC-CCccccc----cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 235566777777777653 2221 11 0112345556666666666655555555666666666666655
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=4.7e-27 Score=278.42 Aligned_cols=363 Identities=13% Similarity=0.116 Sum_probs=279.8
Q ss_pred cccccccEEeecccCCCC------------------CCCcC---CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEec
Q 003192 437 DTLKFCTAISLHKCDVNE------------------LPEEL---ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLT 495 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 495 (840)
..+++++.|++++|.+.. +|..+ ++++|++|++++|.+...+|.. |.++++|++|+++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIA 523 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECc
Confidence 456789999999999987 88876 6999999999999998899965 8999999999999
Q ss_pred CCc-CCC--Cchhhhccc-------CCcEEEecCcccCCc-c--cccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEec
Q 003192 496 KMH-LLS--LPSSLHLLV-------NLRTLCLDQSVLGDI-A--VIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDL 562 (840)
Q Consensus 496 ~~~-~~~--lp~~i~~L~-------~L~~L~L~~~~l~~~-~--~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 562 (840)
+|. ++. +|..++.+. +|++|+|++|.++.+ . .++++++|++|++++|.++.+| .++++++|++|++
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC
Confidence 998 874 899888887 999999999999884 4 5999999999999999999999 8999999999999
Q ss_pred CCCCCCccccccccccccccccCChhhhhcCCC-CCeEEEEeecCccCCCccc---cccCcEEEEEEcCcCCcCC-----
Q 003192 563 TNCSKLKSIPPNVERLNIERSNASLDELKHLSR-LTTLEIHIQGAKILPRGLF---SKKLERYKILIGDEWDWHG----- 633 (840)
Q Consensus 563 ~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~----- 633 (840)
++| .+..+|.. +.++++ |+.|++++|.+..+|..+. ..+|+.|++..+.......
T Consensus 603 s~N-~l~~lp~~---------------l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 603 DYN-QIEEIPED---------------FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp CSS-CCSCCCTT---------------SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred cCC-ccccchHH---------------HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 995 45678764 456788 9999999999999987662 2348888887665322111
Q ss_pred ----CCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccc------cccCCCcEEEeecCCCcceee
Q 003192 634 ----KYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDA------EGFLQLKHLHVQNSPYILCIV 703 (840)
Q Consensus 634 ----~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~------~~l~~L~~L~l~~~~~l~~l~ 703 (840)
....++.|.+..|....+|.+.+..+++|+.|++++|... .++..... .++++|+.|+|++|. +..++
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp 744 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLS 744 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCC
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cccch
Confidence 2237888889888888888888888999999999998654 45544311 234599999999985 44444
Q ss_pred cCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecC-----CCCcccccHHHhhhcccCcEEEEccc
Q 003192 704 DSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNC-----NKLKSILSVSIARGLQQLQVIDVTEC 778 (840)
Q Consensus 704 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C-----~~L~~l~~~~~~~~l~~L~~L~l~~c 778 (840)
... ....+++|+.|+|+++ .+..+ |.....+++|+.|++++| +++....| ..+.++++|+.|++++|
T Consensus 745 ~~l---~~~~l~~L~~L~Ls~N-~L~~l---p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 745 DDF---RATTLPYLSNMDVSYN-CFSSF---PTQPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSN 816 (876)
T ss_dssp GGG---STTTCTTCCEEECCSS-CCSSC---CCGGGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSS
T ss_pred HHh---hhccCCCcCEEEeCCC-CCCcc---chhhhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCC
Confidence 221 1137899999999995 56666 555678999999999873 33444434 25688999999999997
Q ss_pred ccchhhccccccccccchhhcccccccccccccccccccCccccc--------ccceeecCCCCCcc
Q 003192 779 KSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNEITFS--------KLKSLSLSYLPSLT 837 (840)
Q Consensus 779 ~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~--------~L~~L~L~~cp~L~ 837 (840)
. +..++.. . .++|+.|++++|+....-+..+.... .-+..+|.+||.|.
T Consensus 817 ~-L~~Ip~~-l--------~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 817 D-IRKVDEK-L--------TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp C-CCBCCSC-C--------CSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred C-CCccCHh-h--------cCCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 4 4555322 1 15899999999987654444433222 22334677899875
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=3.1e-27 Score=282.30 Aligned_cols=327 Identities=17% Similarity=0.146 Sum_probs=161.9
Q ss_pred cccccccEEeecccCCCC-CCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCC-CCchhhhcccCCcE
Q 003192 437 DTLKFCTAISLHKCDVNE-LPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLL-SLPSSLHLLVNLRT 514 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~ 514 (840)
....++++|++++|.+.. +|...++++|++|++++|.+...+|.. |.++++|++|++++|.+. .+|.. .+++|++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 345667777777777744 344226777777777777776555543 667777777777777665 23322 5556666
Q ss_pred EEecCcccCC--cccccCC-CCCCEEeccCCCCC-CCcHHHhccCCCCEEecCCCCCCcccccc-ccc------cccccc
Q 003192 515 LCLDQSVLGD--IAVIGEL-KQLEILSLSSSDIE-HLPREIGRLSKLRLLDLTNCSKLKSIPPN-VER------LNIERS 583 (840)
Q Consensus 515 L~L~~~~l~~--~~~i~~L-~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~-l~~------L~~~~~ 583 (840)
|++++|.++. |..++.+ ++|++|++++|.++ .+|..++++++|++|++++|...+.+|.. +.. |.+..+
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 6666665542 3344443 66666666666555 45555666666666666654433344432 221 122111
Q ss_pred ---cCChhhhhcCC-CCCeEEEEeecCc-cCCCcc-c--cccCcEEEEEEcC----cCCcCCCCCCccEEEEeecCcccc
Q 003192 584 ---NASLDELKHLS-RLTTLEIHIQGAK-ILPRGL-F--SKKLERYKILIGD----EWDWHGKYETSRTLKLMLNTRTCL 651 (840)
Q Consensus 584 ---~~~~~~l~~l~-~L~~L~l~~~~~~-~~~~~~-~--~~~L~~L~l~~~~----~~~~~~~~~~l~~l~L~~~~~~~~ 651 (840)
+..+..+..++ +|+.|+++.|.+. .+|..+ . +.+|+.|++..+. ........+.++.|++..+.....
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 12233444444 5566666555543 222222 1 3445555553332 112233445555555554444433
Q ss_pred hhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccc
Q 003192 652 ENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKI 731 (840)
Q Consensus 652 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 731 (840)
.+..+..+++|+.|++++|.....++..+ ..+++|++|++++|.....++. ....+++|+.|+++++.-...+
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~-----~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPS-----GLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCG-----GGGGCTTCCEEECCSSCCCSCC
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCH-----HHhcCCCCCEEEccCCccCCcC
Confidence 33334445555555555555444444444 4455555555555443222211 1234455555555554322222
Q ss_pred cccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEccc
Q 003192 732 CNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTEC 778 (840)
Q Consensus 732 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 778 (840)
|...+.+++|+.|++++|. +....| ..+..+++|+.|++++|
T Consensus 507 ---p~~~~~l~~L~~L~L~~N~-l~~~~p-~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 507 ---PKWIGRLENLAILKLSNNS-FSGNIP-AELGDCRSLIWLDLNTN 548 (768)
T ss_dssp ---CGGGGGCTTCCEEECCSSC-CEEECC-GGGGGCTTCCEEECCSS
T ss_pred ---ChHHhcCCCCCEEECCCCc-ccCcCC-HHHcCCCCCCEEECCCC
Confidence 2233445555555555532 332222 13344555555555544
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.2e-26 Score=270.83 Aligned_cols=380 Identities=14% Similarity=0.104 Sum_probs=234.0
Q ss_pred cccccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCc
Q 003192 437 DTLKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLR 513 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~ 513 (840)
..+..+++|++++|.+..++. .+ ++++|++|++++|.+....| ..|.++++|++|++++|.+..+ |..++.+++|+
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 345689999999999988754 44 89999999999998865444 4589999999999999999865 67899999999
Q ss_pred EEEecCcccCC--cccccCCCCCCEEeccCCCCCCCc-HHHhccCCCCEEecCCCCCCccccc-cccc--------cccc
Q 003192 514 TLCLDQSVLGD--IAVIGELKQLEILSLSSSDIEHLP-REIGRLSKLRLLDLTNCSKLKSIPP-NVER--------LNIE 581 (840)
Q Consensus 514 ~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~-~l~~--------L~~~ 581 (840)
+|++++|.++. +..++++++|++|++++|.++.++ ..+..+++|++|++++| .+..+++ .+.. |.+.
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECT
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecC
Confidence 99999999988 467999999999999999999762 33555999999999995 4555532 2221 1111
Q ss_pred ccc---CChhhh-------------------------------------------------hcCC--CCCeEEEEeecCc
Q 003192 582 RSN---ASLDEL-------------------------------------------------KHLS--RLTTLEIHIQGAK 607 (840)
Q Consensus 582 ~~~---~~~~~l-------------------------------------------------~~l~--~L~~L~l~~~~~~ 607 (840)
.+. .....+ ..+. +|+.|+++.|.+.
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 100 000000 0000 3445555555555
Q ss_pred cCCCcc--ccccCcEEEEEEcCcC---CcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccc
Q 003192 608 ILPRGL--FSKKLERYKILIGDEW---DWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDA 682 (840)
Q Consensus 608 ~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 682 (840)
.++... .+++|+.|++..+... ......+.++.|.+..+.....++..+..+++|+.|++++|.....++.. ..
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG-CL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-TT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh-hh
Confidence 544432 4455565555433311 12333455556666555555444444455666666666665443333222 01
Q ss_pred cccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHH
Q 003192 683 EGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVS 762 (840)
Q Consensus 683 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~ 762 (840)
..+++|++|++++|... .+.. .......+++|+.|+++++. +..+. +.....+++|+.|++++| ++....+..
T Consensus 347 ~~l~~L~~L~l~~n~l~-~~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 419 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIE-TSDC--CNLQLRNLSHLQSLNLSYNE-PLSLK--TEAFKECPQLELLDLAFT-RLKVKDAQS 419 (606)
T ss_dssp TTCTTCCEEECCSSCCC-EEEE--STTTTTTCTTCCEEECCSCS-CEEEC--TTTTTTCTTCSEEECTTC-CEECCTTCC
T ss_pred hccCcCCEEECCCCccc-cccC--cchhcccCCCCCEEECCCCc-CCcCC--HHHhcCCccCCeEECCCC-cCCCcccch
Confidence 45566666666665422 1110 01123456667777776643 33332 233445667777777764 354443323
Q ss_pred HhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccc---cccCcccccccceeecCCC
Q 003192 763 IARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAE---AATNEITFSKLKSLSLSYL 833 (840)
Q Consensus 763 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~---~~~~l~~l~~L~~L~L~~c 833 (840)
.+..+++|++|++++| .+....+ ..+..+++|+.|++++|...+. .+..+..+++|+.|+|++|
T Consensus 420 ~~~~l~~L~~L~l~~n-~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHS-LLDISSE------QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TTTTCTTCCEEECTTC-CCBTTCT------TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred hhhCcccCCEEECCCC-ccCCcCH------HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 4566777777777765 3333322 2234567788888888876552 2245677888888888776
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=4.3e-26 Score=256.64 Aligned_cols=340 Identities=19% Similarity=0.197 Sum_probs=238.6
Q ss_pred cccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEec
Q 003192 439 LKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLD 518 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 518 (840)
+..++.|++.++.+..+|....+++|++|++++|.+.. ++. +.++++|++|++++|.+..+|. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 46788888888888777765578888888888887643 343 7788888888888888887776 8888888888888
Q ss_pred CcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCe
Q 003192 519 QSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 519 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
+|.++.++.++++++|++|++++|.++.+|. ++.+++|++|++++ .+..+++ +.++++|+.
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~----------------~~~l~~L~~ 181 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP----------------LANLTTLER 181 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG----------------GTTCTTCCE
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh----------------hccCCCCCE
Confidence 8888876668888888888888888887764 78888888888753 2333222 556667777
Q ss_pred EEEEeecCccCCCccccccCcEEEEEEcCcCCc--CCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhh
Q 003192 599 LEIHIQGAKILPRGLFSKKLERYKILIGDEWDW--HGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNV 676 (840)
Q Consensus 599 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 676 (840)
|++++|.+..++....+.+|+.|++..+..... ....+.++.|.+..+.....+ .+..+++|+.|++++|......
T Consensus 182 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 182 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG
T ss_pred EECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccch
Confidence 777777666665444556667666654432111 234556666777665554442 3455788888888887644322
Q ss_pred cccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCc
Q 003192 677 LNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLK 756 (840)
Q Consensus 677 ~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~ 756 (840)
. + ..+++|+.|++++|.. ..++ ....+++|+.|+++++ .+..++ +...+++|+.|++++| ++.
T Consensus 260 -~-~--~~l~~L~~L~l~~n~l-~~~~------~~~~l~~L~~L~L~~n-~l~~~~----~~~~l~~L~~L~L~~n-~l~ 322 (466)
T 1o6v_A 260 -P-L--SGLTKLTELKLGANQI-SNIS------PLAGLTALTNLELNEN-QLEDIS----PISNLKNLTYLTLYFN-NIS 322 (466)
T ss_dssp -G-G--TTCTTCSEEECCSSCC-CCCG------GGTTCTTCSEEECCSS-CCSCCG----GGGGCTTCSEEECCSS-CCS
T ss_pred -h-h--hcCCCCCEEECCCCcc-Cccc------cccCCCccCeEEcCCC-cccCch----hhcCCCCCCEEECcCC-cCC
Confidence 2 3 6788888888888752 2221 2456788888888885 455542 2567888888888886 577
Q ss_pred ccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccCcccccccceeecCCCC
Q 003192 757 SILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNEITFSKLKSLSLSYLP 834 (840)
Q Consensus 757 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~cp 834 (840)
++++ +..+++|++|++++| .+.++ ..+..+++|+.|++++|...+..| +..+++|+.|++++|+
T Consensus 323 ~~~~---~~~l~~L~~L~l~~n-~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 323 DISP---VSSLTKLQRLFFYNN-KVSDV--------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCGG---GGGCTTCCEEECCSS-CCCCC--------GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred Cchh---hccCccCCEeECCCC-ccCCc--------hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 7655 467888888888887 45443 234567888888888888776665 6778888888888874
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=7.7e-26 Score=273.15 Aligned_cols=389 Identities=17% Similarity=0.176 Sum_probs=235.4
Q ss_pred CCccccccccccccEEeecccCCCCCC-CcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhh
Q 003192 430 PQEWLDKDTLKFCTAISLHKCDVNELP-EEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSL 506 (840)
Q Consensus 430 ~~~~~~~~~~~~~~~l~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i 506 (840)
....|. .++++++|++++|.+..++ ..+ ++++|++|++++|.....+++..|.++++|++|+|++|.+..+ |..|
T Consensus 16 L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 16 LTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 344454 6789999999999997764 444 9999999999999877788677799999999999999999966 7899
Q ss_pred hcccCCcEEEecCcccCC--ccc--ccCCCCCCEEeccCCCCCCC--cHHHhccCCCCEEecCCCCCCccccccccc---
Q 003192 507 HLLVNLRTLCLDQSVLGD--IAV--IGELKQLEILSLSSSDIEHL--PREIGRLSKLRLLDLTNCSKLKSIPPNVER--- 577 (840)
Q Consensus 507 ~~L~~L~~L~L~~~~l~~--~~~--i~~L~~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~l~~c~~l~~lp~~l~~--- 577 (840)
+++++|++|+|++|.+.. +.. ++++++|++|++++|.++.+ +..++++++|++|++++|......|..+..
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 999999999999999886 444 99999999999999999865 357999999999999996543434443332
Q ss_pred -----ccccccc---CChhhhhcCC------CCCeEEEEeecCcc-CCCcc-----------------------------
Q 003192 578 -----LNIERSN---ASLDELKHLS------RLTTLEIHIQGAKI-LPRGL----------------------------- 613 (840)
Q Consensus 578 -----L~~~~~~---~~~~~l~~l~------~L~~L~l~~~~~~~-~~~~~----------------------------- 613 (840)
|.+..+. .....+..+. +|+.|+++.|.+.. .+..+
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 2222111 1111222222 36677776664321 11100
Q ss_pred ----------ccccCcEEEEEEcCc----CCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhccc
Q 003192 614 ----------FSKKLERYKILIGDE----WDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNE 679 (840)
Q Consensus 614 ----------~~~~L~~L~l~~~~~----~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 679 (840)
...+|+.|++..+.. .......+.++.|++..+.....++..+..+++|+.|++++|......+..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 013455555433221 112334455666666666555555555555666666666665543333333
Q ss_pred ccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecC-------
Q 003192 680 LDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNC------- 752 (840)
Q Consensus 680 l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C------- 752 (840)
+ .++++|+.|++++|. +..++. .....+++|+.|+++++ .++.++ .+++|+.|.+++|
T Consensus 334 ~--~~l~~L~~L~L~~N~-i~~~~~----~~~~~l~~L~~L~Ls~N-~l~~i~-------~~~~L~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 334 F--YGLPKVAYIDLQKNH-IAIIQD----QTFKFLEKLQTLDLRDN-ALTTIH-------FIPSIPDIFLSGNKLVTLPK 398 (844)
T ss_dssp C--SSCTTCCEEECCSCC-CCCCCS----SCSCSCCCCCEEEEETC-CSCCCS-------SCCSCSEEEEESCCCCCCCC
T ss_pred h--cCCCCCCEEECCCCC-CCccCh----hhhcCCCCCCEEECCCC-CCCccc-------CCCCcchhccCCCCcccccc
Confidence 3 556666666666653 222211 12234556666666553 222221 1223333333321
Q ss_pred ------------CCCcccccHHHhhhcccCcEEEEcccccchhhccc------------------------cccccccch
Q 003192 753 ------------NKLKSILSVSIARGLQQLQVIDVTECKSMEVILGT------------------------EEERISSNQ 796 (840)
Q Consensus 753 ------------~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~------------------------~~~~~~~~~ 796 (840)
++++.++....+..+++|+.|++++| .+..+... .......+.
T Consensus 399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred cccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 12222222223335555555555553 22211110 000112345
Q ss_pred hhcccccccccccccccccccCcccccccceeecCCCCCcc
Q 003192 797 EIELITPRGIQKCSLTAEAATNEITFSKLKSLSLSYLPSLT 837 (840)
Q Consensus 797 ~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~cp~L~ 837 (840)
.+++|+.|++++|...+..|..+..+++|+.|+|+++ +|+
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 517 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLT 517 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCS
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCC-CCC
Confidence 6788888999998777666677788899999998887 444
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.1e-26 Score=265.51 Aligned_cols=379 Identities=15% Similarity=0.158 Sum_probs=257.0
Q ss_pred ccccccEEeecccCCCCCC-CcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchh-hhcccCCcE
Q 003192 438 TLKFCTAISLHKCDVNELP-EEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSS-LHLLVNLRT 514 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~ 514 (840)
..+.+++|++++|.+..++ ..+ ++++|++|++++|.+.. +++..|.++++|++|++++|.+..+|.. ++.+++|++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 4478999999999997764 344 89999999999998864 4445589999999999999999988764 999999999
Q ss_pred EEecCcccCC---cccccCCCCCCEEeccCCC-CCCCc-HHHhccCCCCEEecCCCCCCcccccccccc------ccccc
Q 003192 515 LCLDQSVLGD---IAVIGELKQLEILSLSSSD-IEHLP-REIGRLSKLRLLDLTNCSKLKSIPPNVERL------NIERS 583 (840)
Q Consensus 515 L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~-l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L------~~~~~ 583 (840)
|++++|.++. +..++++++|++|++++|. +..+| ..++++++|++|++++|...+..|..+..+ .+..+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9999999875 4679999999999999997 67776 478999999999999976555566655543 22222
Q ss_pred cC--Chhh-hhcCCCCCeEEEEeecCccCC---Ccc--ccccCcEEEEEEc----------------------------C
Q 003192 584 NA--SLDE-LKHLSRLTTLEIHIQGAKILP---RGL--FSKKLERYKILIG----------------------------D 627 (840)
Q Consensus 584 ~~--~~~~-l~~l~~L~~L~l~~~~~~~~~---~~~--~~~~L~~L~l~~~----------------------------~ 627 (840)
.. .... +..+++|+.|++++|.+..++ ..+ ...+|+.|.+..+ .
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 11 1122 356899999999999887652 111 2334444443221 1
Q ss_pred c------------------------------CCc---------CCCCCCccEEEEeecCcccchhhHHHhhcccceeeec
Q 003192 628 E------------------------------WDW---------HGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLG 668 (840)
Q Consensus 628 ~------------------------------~~~---------~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~ 668 (840)
. ..+ ......++.+.+..+....+|.+.+..+++|+.|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 0 000 0012356667777666666777777778899999998
Q ss_pred ccccchhhccc-ccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEE
Q 003192 669 ELQDVKNVLNE-LDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGII 747 (840)
Q Consensus 669 ~~~~~~~~~~~-l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L 747 (840)
+|......+.. .....+++|++|++++|. +..++.. ......+++|+.|+++++ .++.+ +.....+++|+.|
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~l---p~~~~~~~~L~~L 415 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKT--GEILLTLKNLTSLDISRN-TFHPM---PDSCQWPEKMRFL 415 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHH--HHHGGGCTTCCEEECTTC-CCCCC---CSCCCCCTTCCEE
T ss_pred CCccccccccchhhhhccccCcEEEccCCc-ccccccc--hhhhhcCCCCCEEECCCC-CCccC---ChhhcccccccEE
Confidence 88766544322 112567888888888864 2222100 001345677777777774 45555 3333445566666
Q ss_pred EEecCCCCcccccHH----------------HhhhcccCcEEEEcccccchhhccccccccccchhhccccccccccccc
Q 003192 748 KVGNCNKLKSILSVS----------------IARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSL 811 (840)
Q Consensus 748 ~l~~C~~L~~l~~~~----------------~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 811 (840)
++++| +++.++... ....+++|++|++++| .++.++. ...+++|+.|++++|..
T Consensus 416 ~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~--------~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 416 NLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD--------ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp ECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC--------GGGCTTCCEEECCSSCC
T ss_pred ECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC--------cccCccCCEEecCCCcc
Confidence 66654 244433210 0124667777777765 4554422 23567899999999887
Q ss_pred ccccccCcccccccceeecCCCC
Q 003192 812 TAEAATNEITFSKLKSLSLSYLP 834 (840)
Q Consensus 812 l~~~~~~l~~l~~L~~L~L~~cp 834 (840)
.+..|..+..+++|+.|+|+++|
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCcCHHHHhcCcccCEEEecCCC
Confidence 77767778899999999998886
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.2e-26 Score=268.57 Aligned_cols=363 Identities=13% Similarity=0.108 Sum_probs=271.7
Q ss_pred cccccccEEeecccCCCC------------------CCCcC---CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEec
Q 003192 437 DTLKFCTAISLHKCDVNE------------------LPEEL---ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLT 495 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 495 (840)
..+++++.|++++|.+.. +|..+ ++++|++|++++|.+.+.+|.. |+++++|++|+++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls 281 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVA 281 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECc
Confidence 456789999999999987 88875 5999999999999998889965 8999999999999
Q ss_pred CCc-CCC--Cchhhhcc------cCCcEEEecCcccCCc-c--cccCCCCCCEEeccCCCCC-CCcHHHhccCCCCEEec
Q 003192 496 KMH-LLS--LPSSLHLL------VNLRTLCLDQSVLGDI-A--VIGELKQLEILSLSSSDIE-HLPREIGRLSKLRLLDL 562 (840)
Q Consensus 496 ~~~-~~~--lp~~i~~L------~~L~~L~L~~~~l~~~-~--~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l 562 (840)
+|. ++. +|..++.+ ++|++|++++|.++.+ . .++++++|++|++++|.++ .+| .++.+++|++|++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 998 884 89999887 9999999999999885 4 6999999999999999999 999 8999999999999
Q ss_pred CCCCCCccccccccccccccccCChhhhhcCCC-CCeEEEEeecCccCCCccc---cccCcEEEEEEcCcCC----cCC-
Q 003192 563 TNCSKLKSIPPNVERLNIERSNASLDELKHLSR-LTTLEIHIQGAKILPRGLF---SKKLERYKILIGDEWD----WHG- 633 (840)
Q Consensus 563 ~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~----~~~- 633 (840)
++| .+..+|.. +.++++ |+.|++++|.+..+|..+. +.+|+.|++..+.... ...
T Consensus 361 ~~N-~l~~lp~~---------------l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 361 AYN-QITEIPAN---------------FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp CSS-EEEECCTT---------------SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred CCC-ccccccHh---------------hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 995 56677764 467788 9999999999999998763 3378888887654322 122
Q ss_pred ------CCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccc------cccCCCcEEEeecCCCcce
Q 003192 634 ------KYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDA------EGFLQLKHLHVQNSPYILC 701 (840)
Q Consensus 634 ------~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~------~~l~~L~~L~l~~~~~l~~ 701 (840)
....++.|++..+....++...+..+++|+.|++++|... .++..... ..+++|+.|++++|. +..
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTK 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCB
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCc
Confidence 3457788888888877888888877889999999887655 44443311 122389999998875 334
Q ss_pred eecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecC-----CCCcccccHHHhhhcccCcEEEEc
Q 003192 702 IVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNC-----NKLKSILSVSIARGLQQLQVIDVT 776 (840)
Q Consensus 702 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C-----~~L~~l~~~~~~~~l~~L~~L~l~ 776 (840)
++... ....+++|+.|+++++ .++.+ |.....+++|+.|++++| +++....| ..+..+++|++|+++
T Consensus 503 lp~~~---~~~~l~~L~~L~Ls~N-~l~~i---p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 503 LSDDF---RATTLPYLVGIDLSYN-SFSKF---PTQPLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIG 574 (636)
T ss_dssp CCGGG---STTTCTTCCEEECCSS-CCSSC---CCGGGGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECC
T ss_pred cChhh---hhccCCCcCEEECCCC-CCCCc---ChhhhcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECC
Confidence 43221 1136889999999884 45556 455667889999999642 23333333 246778999999998
Q ss_pred ccccchhhccccccccccchhhccccccccccccccccccc--------CcccccccceeecCCCCCcc
Q 003192 777 ECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAAT--------NEITFSKLKSLSLSYLPSLT 837 (840)
Q Consensus 777 ~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--------~l~~l~~L~~L~L~~cp~L~ 837 (840)
+|. +..++.. . .++|+.|++++|+....-.. ....+...+..++.+||.|.
T Consensus 575 ~N~-l~~ip~~-~--------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 575 SND-IRKVNEK-I--------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp SSC-CCBCCSC-C--------CTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCc-CCccCHh-H--------hCcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 864 4554321 1 15788899999875542211 11233444566788898875
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=5.9e-26 Score=265.11 Aligned_cols=379 Identities=15% Similarity=0.142 Sum_probs=236.6
Q ss_pred ccccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCcE
Q 003192 438 TLKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLRT 514 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~ 514 (840)
..+++++|++++|.+..++. .+ ++++|++|++++|.+....|. .|+++++|++|++++|.+..+| ..++++++|++
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 45678888888888876643 33 788888888888877544444 4788888888888888888776 57888888888
Q ss_pred EEecCcccCC---cccccCCCCCCEEeccCCCCCCCc-HHHhccCCCC----EEecCCCCCCcccccccc------cccc
Q 003192 515 LCLDQSVLGD---IAVIGELKQLEILSLSSSDIEHLP-REIGRLSKLR----LLDLTNCSKLKSIPPNVE------RLNI 580 (840)
Q Consensus 515 L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~----~L~l~~c~~l~~lp~~l~------~L~~ 580 (840)
|++++|.+.. |..++++++|++|++++|.++.++ ..++.+++|+ +|++++| .+..+|+... .|.+
T Consensus 133 L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L 211 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTL 211 (606)
T ss_dssp EECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC-CCCEECTTTTTTCEEEEEEE
T ss_pred EeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC-CcceeCcccccCceeeeeec
Confidence 8888888764 566888888888888888887553 3355444443 5666653 3333332111 0100
Q ss_pred --------------------------------------------------------------------------------
Q 003192 581 -------------------------------------------------------------------------------- 580 (840)
Q Consensus 581 -------------------------------------------------------------------------------- 580 (840)
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 291 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEE
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEE
Confidence
Q ss_pred -ccc-cCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCC--cCCCCCCccEEEEeecCcccch--hh
Q 003192 581 -ERS-NASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWD--WHGKYETSRTLKLMLNTRTCLE--NG 654 (840)
Q Consensus 581 -~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~l~L~~~~~~~~~--~~ 654 (840)
... ...+..+..+++|+.|++++|.+..+|.. .+++|+.|++..+.... .....+.++.+++..+.....+ +.
T Consensus 292 l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 370 (606)
T 3vq2_A 292 LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY 370 (606)
T ss_dssp EESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCH
T ss_pred ecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhh
Confidence 000 01122567788999999999999999965 88899999997763222 2345567777777766655442 33
Q ss_pred HHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceee--------------------cCCCCccCCCC
Q 003192 655 TIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIV--------------------DSVEGVACDAF 714 (840)
Q Consensus 655 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~--------------------~~~~~~~~~~~ 714 (840)
.+..+++|+.|++++|... .++..+ ..+++|+.|++++|......+ ..........+
T Consensus 371 ~~~~~~~L~~L~L~~n~l~-~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAI-IMSANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp HHHCCSCCCEEECCSCSEE-EECCCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred hhccCCcccEeECCCCccc-cchhhc--cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 4455677777777765422 233333 445555555555543111100 00000122445
Q ss_pred CccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhcccccccccc
Q 003192 715 PLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISS 794 (840)
Q Consensus 715 ~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 794 (840)
++|+.|+++++.-...+. +...+.+++|+.|++++| +++.+++ ..+..+++|++|++++| .+..+.+. .
T Consensus 448 ~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~------~ 516 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTL--SNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHN-NLLFLDSS------H 516 (606)
T ss_dssp TTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCEEGG------G
T ss_pred CCCCEEECCCCcCCCcch--HHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCC-cCCCcCHH------H
Confidence 666666666643222111 333456677777777775 4666654 24566777777777776 45444332 2
Q ss_pred chhhcccccccccccccccccccCccccc-ccceeecCCCC
Q 003192 795 NQEIELITPRGIQKCSLTAEAATNEITFS-KLKSLSLSYLP 834 (840)
Q Consensus 795 ~~~l~~L~~L~l~~c~~l~~~~~~l~~l~-~L~~L~L~~cp 834 (840)
+..+++|+.|++++|... .+|..+..++ +|+.|+++++|
T Consensus 517 ~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred ccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 346677888888887744 6777777776 48888887765
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.3e-25 Score=250.50 Aligned_cols=357 Identities=18% Similarity=0.186 Sum_probs=236.6
Q ss_pred ccccccEEeecccCCCCC-CCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcE
Q 003192 438 TLKFCTAISLHKCDVNEL-PEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRT 514 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~ 514 (840)
.++++++|++++|.+..+ |..+ ++++|++|++++|.+...++...|.++++|++|++++|.+..+ |..++++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 457889999999988766 4444 8899999999988887677777788999999999999998865 678899999999
Q ss_pred EEecCcccCC--ccc--ccCCCCCCEEeccCCCCCCC-cHH-HhccCCCCEEecCCCCCCccccccccccccccccCChh
Q 003192 515 LCLDQSVLGD--IAV--IGELKQLEILSLSSSDIEHL-PRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLD 588 (840)
Q Consensus 515 L~L~~~~l~~--~~~--i~~L~~L~~L~L~~~~l~~l-p~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~ 588 (840)
|++++|.++. +.. ++++++|++|++++|.++.+ |.. +.++++|++|++++|......|..+..
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~----------- 176 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN----------- 176 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG-----------
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc-----------
Confidence 9999999876 444 88899999999999988876 544 788999999999986433333332221
Q ss_pred hhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHh---hccccee
Q 003192 589 ELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQ---LKGIEDL 665 (840)
Q Consensus 589 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~---l~~L~~L 665 (840)
+ ...+|+.|+++.|.+..++....... ........+.++.|++..+......+..+.. .++|+.|
T Consensus 177 -l-~~~~L~~L~l~~n~l~~~~~~~~~~~----------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 177 -F-QGKHFTLLRLSSITLQDMNEYWLGWE----------KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp -G-TTCEEEEEECTTCBCTTCSTTCTTHH----------HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred -c-ccccccccccccCcccccchhhcccc----------ccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 1 12567788888887776654320000 0000011123344444444433322222222 2678888
Q ss_pred eecccccchhhc----------ccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccc
Q 003192 666 YLGELQDVKNVL----------NELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGR 735 (840)
Q Consensus 666 ~l~~~~~~~~~~----------~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~ 735 (840)
+++++....... ..+.....++|+.|++++|......+. ....+++|+.|+++++ .+..+. +
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~--~ 316 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS-----VFSHFTDLEQLTLAQN-EINKID--D 316 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT-----TTTTCTTCCEEECTTS-CCCEEC--T
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh-----hcccCCCCCEEECCCC-cccccC--h
Confidence 887764322111 011111236788888888764322221 2356788888888885 344442 3
Q ss_pred cCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccccccccccccccc
Q 003192 736 LTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEA 815 (840)
Q Consensus 736 ~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 815 (840)
.....+++|+.|++++| +++.+++ ..+..+++|++|++++| .+..+.+. .+..+++|+.|++++|......
T Consensus 317 ~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYN-HIRALGDQ------SFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSS-CCCEECTT------TTTTCTTCCEEECCSSCCSCCC
T ss_pred hHhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCC-cccccChh------hccccccccEEECCCCccccCC
Confidence 34556888999999885 5777755 35677888999999886 45555332 2346788888888888766544
Q ss_pred ccCcccccccceeecCCCC
Q 003192 816 ATNEITFSKLKSLSLSYLP 834 (840)
Q Consensus 816 ~~~l~~l~~L~~L~L~~cp 834 (840)
+..+..+++|+.|+|+++|
T Consensus 388 ~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HhHhccCCcccEEEccCCC
Confidence 4556788899999988764
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=5.8e-25 Score=237.68 Aligned_cols=304 Identities=15% Similarity=0.197 Sum_probs=178.1
Q ss_pred cccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEE
Q 003192 437 DTLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLC 516 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 516 (840)
..++++++|+++++.+..++....+++|++|++++|.+. .++. +.++++|++|++++|.+..+| .+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 345677888888887777766447777777777777664 3333 677777777777777777665 477777777777
Q ss_pred ecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCC
Q 003192 517 LDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRL 596 (840)
Q Consensus 517 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L 596 (840)
+++|.+..++.+..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~----------------~~~l~~L 179 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP----------------IANLTDL 179 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG----------------GGGCTTC
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh----------------hccCCCC
Confidence 77777777655777777777777777433333337777777777777743 333332 4567777
Q ss_pred CeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhh
Q 003192 597 TTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNV 676 (840)
Q Consensus 597 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 676 (840)
+.|++++|.+..++.. ..+++|+.|+++++.....
T Consensus 180 ~~L~l~~n~l~~~~~~--------------------------------------------~~l~~L~~L~l~~n~l~~~- 214 (347)
T 4fmz_A 180 YSLSLNYNQIEDISPL--------------------------------------------ASLTSLHYFTAYVNQITDI- 214 (347)
T ss_dssp SEEECTTSCCCCCGGG--------------------------------------------GGCTTCCEEECCSSCCCCC-
T ss_pred CEEEccCCcccccccc--------------------------------------------cCCCccceeecccCCCCCC-
Confidence 7777777766555432 2244455555544432221
Q ss_pred cccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCc
Q 003192 677 LNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLK 756 (840)
Q Consensus 677 ~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~ 756 (840)
+. + ..+++|++|++++|.. ..++ ....+++|+.|+++++ .+..+ .....+++|+.|++++| +++
T Consensus 215 ~~-~--~~~~~L~~L~l~~n~l-~~~~------~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~l~~n-~l~ 278 (347)
T 4fmz_A 215 TP-V--ANMTRLNSLKIGNNKI-TDLS------PLANLSQLTWLEIGTN-QISDI----NAVKDLTKLKMLNVGSN-QIS 278 (347)
T ss_dssp GG-G--GGCTTCCEEECCSSCC-CCCG------GGTTCTTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSS-CCC
T ss_pred ch-h--hcCCcCCEEEccCCcc-CCCc------chhcCCCCCEEECCCC-ccCCC----hhHhcCCCcCEEEccCC-ccC
Confidence 11 1 4455555555555431 1111 1234555555555553 23333 12334556666666664 355
Q ss_pred ccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccCcccccccceeecCCCC
Q 003192 757 SILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNEITFSKLKSLSLSYLP 834 (840)
Q Consensus 757 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~cp 834 (840)
.++ .+..+++|++|++++| .+....+ ..+..+++|+.|++++|+..+..| +..+++|++|++++|+
T Consensus 279 ~~~---~~~~l~~L~~L~L~~n-~l~~~~~------~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 279 DIS---VLNNLSQLNSLFLNNN-QLGNEDM------EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp CCG---GGGGCTTCSEEECCSS-CCCGGGH------HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred CCh---hhcCCCCCCEEECcCC-cCCCcCh------hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 542 2455566666666665 2332211 122345556666666666444334 5678889999988875
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=248.35 Aligned_cols=369 Identities=14% Similarity=0.134 Sum_probs=212.0
Q ss_pred cccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEE
Q 003192 439 LKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLC 516 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 516 (840)
.+++++|++++|.+..++. .+ ++++|++|++++|.+....| ..|.++++|++|++++|.++.+|.. .+++|++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 3678888888888877763 33 78888888888888754334 4478888888888888888888776 788888888
Q ss_pred ecCcccCC---cccccCCCCCCEEeccCCCCCCCcHHHhccCCC--CEEecCCCCC--Ccccccccccccc-------cc
Q 003192 517 LDQSVLGD---IAVIGELKQLEILSLSSSDIEHLPREIGRLSKL--RLLDLTNCSK--LKSIPPNVERLNI-------ER 582 (840)
Q Consensus 517 L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L--~~L~l~~c~~--l~~lp~~l~~L~~-------~~ 582 (840)
+++|.++. |..++++++|++|++++|.++. ..+..+++| ++|++++|.. ....|..+..+.. ..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 88888765 3678888888888888888875 346777777 8888888665 4566766665320 00
Q ss_pred c----------------------------------cCChhhhhcCCCCCeEEEEeecCcc-----CCCccccccCcEEEE
Q 003192 583 S----------------------------------NASLDELKHLSRLTTLEIHIQGAKI-----LPRGLFSKKLERYKI 623 (840)
Q Consensus 583 ~----------------------------------~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~L~~L~l 623 (840)
+ ...+..++.+++|+.|+++.+.+.. ++......+|+.|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 0 0012234556666666666554431 111112346666666
Q ss_pred EEcCc----CCcC-----CCCCCccEEEEeecCcccch-hhHH------------------------Hhhcccceeeecc
Q 003192 624 LIGDE----WDWH-----GKYETSRTLKLMLNTRTCLE-NGTI------------------------MQLKGIEDLYLGE 669 (840)
Q Consensus 624 ~~~~~----~~~~-----~~~~~l~~l~L~~~~~~~~~-~~~~------------------------~~l~~L~~L~l~~ 669 (840)
..+.. .... .....++.+++..+.. ..| .++. ..+++|+.|++++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred ecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 54431 1112 3344455555554444 333 1221 2344555555555
Q ss_pred cccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEE
Q 003192 670 LQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKV 749 (840)
Q Consensus 670 ~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l 749 (840)
|......+..+ ..+++|++|++++|... .++. .......+++|+.|+++++.-...++.. ....+++|++|++
T Consensus 334 n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~l~~--~~~~~~~l~~L~~L~Ls~N~l~~~l~~~--~~~~l~~L~~L~L 406 (520)
T 2z7x_B 334 NLLTDTVFENC--GHLTELETLILQMNQLK-ELSK--IAEMTTQMKSLQQLDISQNSVSYDEKKG--DCSWTKSLLSLNM 406 (520)
T ss_dssp SCCCTTTTTTC--CCCSSCCEEECCSSCCC-BHHH--HHHHHTTCTTCCEEECCSSCCBCCGGGC--SCCCCTTCCEEEC
T ss_pred CccChhhhhhh--ccCCCCCEEEccCCccC-cccc--chHHHhhCCCCCEEECCCCcCCcccccc--hhccCccCCEEEC
Confidence 54433333333 44555555555554321 1000 0001234555666666553322113211 1234556666666
Q ss_pred ecCCCCcccccHHHhhhc-ccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccC-cccccccce
Q 003192 750 GNCNKLKSILSVSIARGL-QQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATN-EITFSKLKS 827 (840)
Q Consensus 750 ~~C~~L~~l~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-l~~l~~L~~ 827 (840)
++|. ++...+ ..+ ++|++|++++| .++.++ ..+..+++|+.|++++|... .+|.. +..+++|+.
T Consensus 407 s~N~-l~~~~~----~~l~~~L~~L~Ls~N-~l~~ip-------~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 407 SSNI-LTDTIF----RCLPPRIKVLDLHSN-KIKSIP-------KQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472 (520)
T ss_dssp CSSC-CCGGGG----GSCCTTCCEEECCSS-CCCCCC-------GGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCC-CCcchh----hhhcccCCEEECCCC-cccccc-------hhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence 6643 332222 112 46666666664 344332 12235677888888887654 56655 667888888
Q ss_pred eecCCCC
Q 003192 828 LSLSYLP 834 (840)
Q Consensus 828 L~L~~cp 834 (840)
|+++++|
T Consensus 473 L~l~~N~ 479 (520)
T 2z7x_B 473 IWLHTNP 479 (520)
T ss_dssp EECCSSC
T ss_pred EECcCCC
Confidence 8888775
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=3.7e-25 Score=261.92 Aligned_cols=381 Identities=17% Similarity=0.154 Sum_probs=225.8
Q ss_pred ccccccEEeecccCCCCCCCc-C-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcE
Q 003192 438 TLKFCTAISLHKCDVNELPEE-L-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRT 514 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~ 514 (840)
.++++++|++++|.+..++.. + ++++|++|++++|.+....| ..|+++++|++|++++|.+..+|. .|+++++|++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 457889999999988887764 3 88899999999888755444 458889999999999998888886 5888999999
Q ss_pred EEecCcccCCc--ccccCCCCCCEEeccCCCCCCC-cHHHhccCCCCEEecCCCCCCccccc---------ccccccccc
Q 003192 515 LCLDQSVLGDI--AVIGELKQLEILSLSSSDIEHL-PREIGRLSKLRLLDLTNCSKLKSIPP---------NVERLNIER 582 (840)
Q Consensus 515 L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~---------~l~~L~~~~ 582 (840)
|++++|.++.+ ..++++++|++|++++|.++.+ |..++++++|++|++++| .+..+++ .+..|.+..
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCC
Confidence 99999988773 4688899999999999888754 455778888999988885 3444432 122222221
Q ss_pred c---cCChhhhhc---------------------------CCCCCeEEEEeecCccCCCcc--cc--ccCcEEEEEEcCc
Q 003192 583 S---NASLDELKH---------------------------LSRLTTLEIHIQGAKILPRGL--FS--KKLERYKILIGDE 628 (840)
Q Consensus 583 ~---~~~~~~l~~---------------------------l~~L~~L~l~~~~~~~~~~~~--~~--~~L~~L~l~~~~~ 628 (840)
+ ......+.. .++|+.|++++|.+...+... .+ .+|+.|++..+..
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 1 111122222 245666666666655443322 22 3377777654431
Q ss_pred ----CCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccch-----hhcc--cccccccCCCcEEEeecCC
Q 003192 629 ----WDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVK-----NVLN--ELDAEGFLQLKHLHVQNSP 697 (840)
Q Consensus 629 ----~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~--~l~~~~l~~L~~L~l~~~~ 697 (840)
.......+.++.+.+..+.....++..+..+++|+.|++.++.... .++. ......+++|++|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 1234455667777777666655555555667777777776543221 1111 1122557778888887765
Q ss_pred CcceeecCCCCccCCCCCccceecccccc-ccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEc
Q 003192 698 YILCIVDSVEGVACDAFPLLESLFLHNLT-NLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVT 776 (840)
Q Consensus 698 ~l~~l~~~~~~~~~~~~~~L~~L~l~~~~-~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~ 776 (840)
.. .+ .......+++|+.|+++++. .+..++...+.....++|+.|++++| ++..+++ ..+..+++|+.|+++
T Consensus 341 l~-~~----~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 341 IP-GI----KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIES-DAFSWLGHLEVLDLG 413 (680)
T ss_dssp BC-CC----CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECT-TTTTTCTTCCEEECC
T ss_pred cC-CC----ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CCCeECh-hhhhCCCCCCEEeCC
Confidence 22 11 11133567788888887653 12222111111111234444444443 2333332 123444445555544
Q ss_pred ccc------------------------cchhhccccccccccchhhcccccccccccccc--cccccCcccccccceeec
Q 003192 777 ECK------------------------SMEVILGTEEERISSNQEIELITPRGIQKCSLT--AEAATNEITFSKLKSLSL 830 (840)
Q Consensus 777 ~c~------------------------~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l--~~~~~~l~~l~~L~~L~L 830 (840)
+|. .+..+.+ ..+..+++|+.|++.+|... +..|..+..+++|+.|++
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR------NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT------TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeCh------hhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 432 1222211 12234566666666666543 456777777888888887
Q ss_pred CCC
Q 003192 831 SYL 833 (840)
Q Consensus 831 ~~c 833 (840)
+++
T Consensus 488 s~N 490 (680)
T 1ziw_A 488 SNN 490 (680)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=1.3e-24 Score=255.53 Aligned_cols=378 Identities=17% Similarity=0.150 Sum_probs=257.7
Q ss_pred cccccccEEeecccCCCCCCCc-C-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCc
Q 003192 437 DTLKFCTAISLHKCDVNELPEE-L-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLR 513 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~ 513 (840)
+.+.++++|++++|.+..++.. + ++++|++|+|++|.+. .+++..|.++++|++|+|++|.++.+|. .|.++++|+
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 4567899999999999998864 4 8999999999999884 5676779999999999999999999876 689999999
Q ss_pred EEEecCcccCCcc--cccCCCCCCEEeccCCCCCC--CcHHHhccCCCCEEecCCCCCCcccc-cccccc----------
Q 003192 514 TLCLDQSVLGDIA--VIGELKQLEILSLSSSDIEH--LPREIGRLSKLRLLDLTNCSKLKSIP-PNVERL---------- 578 (840)
Q Consensus 514 ~L~L~~~~l~~~~--~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~c~~l~~lp-~~l~~L---------- 578 (840)
+|+|++|.++.++ .++++++|++|++++|.++. +|..++.+++|++|++++|. +..++ ..+..+
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhh
Confidence 9999999998853 58999999999999999984 57888999999999999853 44332 111110
Q ss_pred -----------------------ccccc----------------------------------------------------
Q 003192 579 -----------------------NIERS---------------------------------------------------- 583 (840)
Q Consensus 579 -----------------------~~~~~---------------------------------------------------- 583 (840)
....+
T Consensus 207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 00000
Q ss_pred ---------c----------------------CChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCC--
Q 003192 584 ---------N----------------------ASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWD-- 630 (840)
Q Consensus 584 ---------~----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 630 (840)
. ..+..+....+|+.|++..+.+..++.. .+..|+.+.+..+....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-KLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC-BCTTCCEEEEESCCSCCBC
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc-cchhhhhcccccccCCCCc
Confidence 0 0011122334455555555554444332 34566777665443222
Q ss_pred cCCCCCCccEEEEeecCcccc--hhhHHHhhcccceeeecccccchhhcccc-----------------------ccccc
Q 003192 631 WHGKYETSRTLKLMLNTRTCL--ENGTIMQLKGIEDLYLGELQDVKNVLNEL-----------------------DAEGF 685 (840)
Q Consensus 631 ~~~~~~~l~~l~L~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----------------------~~~~l 685 (840)
.....+.++.+.+..+..... .......+.+|+.|++..+.... .+..+ ....+
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccc
Confidence 122445666666665544321 11222234455555554433221 11111 11344
Q ss_pred CCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhh
Q 003192 686 LQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIAR 765 (840)
Q Consensus 686 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~ 765 (840)
++|+.++++.+.. ..+ .......+++|+.|+++++.....+. +.....+++|+.|++++| +++.+++ ..+.
T Consensus 445 ~~l~~l~ls~n~l-~~~----~~~~~~~~~~L~~L~Ls~N~~~~~~~--~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~ 515 (635)
T 4g8a_A 445 RNLIYLDISHTHT-RVA----FNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQC-QLEQLSP-TAFN 515 (635)
T ss_dssp TTCCEEECTTSCC-EEC----CTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTS-CCCEECT-TTTT
T ss_pred ccccccccccccc-ccc----cccccccchhhhhhhhhhcccccccC--chhhhhccccCEEECCCC-ccCCcCh-HHHc
Confidence 5555555555432 111 11133567899999999877666553 344567899999999996 6999876 3578
Q ss_pred hcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccCcccc-cccceeecCCCC
Q 003192 766 GLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNEITF-SKLKSLSLSYLP 834 (840)
Q Consensus 766 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l-~~L~~L~L~~cp 834 (840)
++++|++|+|++| .++.+.+.. +..+++|+.|++++|...+..|..+..+ ++|+.|+|+++|
T Consensus 516 ~l~~L~~L~Ls~N-~l~~l~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 516 SLSSLQVLNMSHN-NFFSLDTFP------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCTTCCEEECTTS-CCCBCCCGG------GTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCC-cCCCCChhH------HhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 8999999999996 677765433 3478899999999999988888888887 689999998865
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=1.9e-24 Score=255.75 Aligned_cols=374 Identities=15% Similarity=0.121 Sum_probs=215.8
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEEEecCcc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 521 (840)
+.++.+++.+..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |..++++++|++|+|++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 467788888888987654 79999999999885 56666699999999999999999976 6689999999999999999
Q ss_pred cCCcc--cccCCCCCCEEeccCCCCCCCc-HHHhccCCCCEEecCCCCCCcccccccccc------ccccc---cCChhh
Q 003192 522 LGDIA--VIGELKQLEILSLSSSDIEHLP-REIGRLSKLRLLDLTNCSKLKSIPPNVERL------NIERS---NASLDE 589 (840)
Q Consensus 522 l~~~~--~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L------~~~~~---~~~~~~ 589 (840)
++.++ .++++++|++|++++|.++.+| ..++++++|++|++++|......|..+..+ .+..+ ......
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 98843 5999999999999999999886 568999999999999965433333322211 11111 111122
Q ss_pred hh--cCCCCCeEEEEeecCccCCCcc--ccccCcEEEEEEcCcCC-------cCCCCCCccEEEEeecCcccchhhHHHh
Q 003192 590 LK--HLSRLTTLEIHIQGAKILPRGL--FSKKLERYKILIGDEWD-------WHGKYETSRTLKLMLNTRTCLENGTIMQ 658 (840)
Q Consensus 590 l~--~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~-------~~~~~~~l~~l~L~~~~~~~~~~~~~~~ 658 (840)
+. .+++|+.|+++.|.+..+++.. .+.+|+.+.+....... .......++.|.+..+.....++..+..
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 21 2345555555555444433321 22223322221100000 0001134455555544444443333333
Q ss_pred hcc--cceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccc-----cc
Q 003192 659 LKG--IEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLE-----KI 731 (840)
Q Consensus 659 l~~--L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~i 731 (840)
++. |+.|++++|......+..+ ..+++|++|++++|......+ .....+++|+.|+++++..-. .+
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFS-----HSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSCCBSEECT-----TTTTTCTTCCEEECTTCBCCC------C
T ss_pred cCcCCCCEEECCCCCcCccCcccc--cCcccccEeeCCCCccCccCh-----hhhcCCCCccEEeccchhhhcccccccc
Confidence 433 7777776665443333333 556677777776654222111 122445666666665432111 11
Q ss_pred cc-cccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccc---------------------------cchh
Q 003192 732 CN-GRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECK---------------------------SMEV 783 (840)
Q Consensus 732 ~~-~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~---------------------------~l~~ 783 (840)
+. .......+++|++|++++| .+..+++ ..+.++++|++|++++|. .+..
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~ 395 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE
T ss_pred cccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe
Confidence 00 0112344566666666663 3555443 234556666666665542 1222
Q ss_pred hccccccccccchhhcccccccccccccccccc-cCcccccccceeecCCC
Q 003192 784 ILGTEEERISSNQEIELITPRGIQKCSLTAEAA-TNEITFSKLKSLSLSYL 833 (840)
Q Consensus 784 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~l~~l~~L~~L~L~~c 833 (840)
+. ...+..+++|+.|++++|...+.+| ..+..+++|++|++++|
T Consensus 396 ~~------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 396 IE------SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp EC------TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred EC------hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 21 1223455666777777766655554 34455666666666554
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=5.2e-24 Score=239.61 Aligned_cols=327 Identities=19% Similarity=0.196 Sum_probs=242.8
Q ss_pred cccccccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCC
Q 003192 433 WLDKDTLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNL 512 (840)
Q Consensus 433 ~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L 512 (840)
++....++++++|++++|.+..++....+++|++|++++|.+.. ++. +.++++|++|++++|.+..+|. +..+++|
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred CcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcccc-Chh--hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 34445678999999999999988875599999999999998854 343 8899999999999999999876 8999999
Q ss_pred cEEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhc
Q 003192 513 RTLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKH 592 (840)
Q Consensus 513 ~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~ 592 (840)
++|++++|.+..++.++++++|++|+++ +.+..++. ++++++|++|++++|. +..++. +..
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~----------------l~~ 197 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNK-VSDISV----------------LAK 197 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSC-CCCCGG----------------GGG
T ss_pred CEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCc-CCCChh----------------hcc
Confidence 9999999999998889999999999996 55666655 8999999999999954 554442 566
Q ss_pred CCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcC--CcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeeccc
Q 003192 593 LSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEW--DWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGEL 670 (840)
Q Consensus 593 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 670 (840)
+++|+.|++++|.+..++....+.+|+.|++..+... ......+.++.|++..+.....+. +..+++|+.|++++|
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred CCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC
Confidence 7777788777777766655446677777777654422 234455677777777666555544 556788888888887
Q ss_pred ccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEe
Q 003192 671 QDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVG 750 (840)
Q Consensus 671 ~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~ 750 (840)
.... ++. + ..+++|+.|++++|.. ..++ ....+++|+.|+++++ .+..+. +...+++|+.|+++
T Consensus 276 ~l~~-~~~-~--~~l~~L~~L~L~~n~l-~~~~------~~~~l~~L~~L~L~~n-~l~~~~----~~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 276 QISN-ISP-L--AGLTALTNLELNENQL-EDIS------PISNLKNLTYLTLYFN-NISDIS----PVSSLTKLQRLFFY 339 (466)
T ss_dssp CCCC-CGG-G--TTCTTCSEEECCSSCC-SCCG------GGGGCTTCSEEECCSS-CCSCCG----GGGGCTTCCEEECC
T ss_pred ccCc-ccc-c--cCCCccCeEEcCCCcc-cCch------hhcCCCCCCEEECcCC-cCCCch----hhccCccCCEeECC
Confidence 5443 222 3 6788888888888652 2221 2456888888888886 355442 24578888888888
Q ss_pred cCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccccccccccccc
Q 003192 751 NCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTA 813 (840)
Q Consensus 751 ~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 813 (840)
+| +++.++ .+..+++|+.|++++| .+.++.+ +..+++|+.|++++|+..+
T Consensus 340 ~n-~l~~~~---~l~~l~~L~~L~l~~n-~l~~~~~--------~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NN-KVSDVS---SLANLTNINWLSAGHN-QISDLTP--------LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SS-CCCCCG---GGTTCTTCCEEECCSS-CCCBCGG--------GTTCTTCCEEECCCEEEEC
T ss_pred CC-ccCCch---hhccCCCCCEEeCCCC-ccCccch--------hhcCCCCCEEeccCCcccC
Confidence 86 577763 3567888888888886 4444432 3467778888888887654
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=243.82 Aligned_cols=314 Identities=18% Similarity=0.189 Sum_probs=206.0
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEEEecCcc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 521 (840)
+.++.+++.+..+|..+ .++++.|++++|.+.. ++...|.++++|++|+|++|.+..+ |..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45666666777777654 3578888888887754 4444578888888888888888765 6678888888888888888
Q ss_pred cCCc--ccccCCCCCCEEeccCCCCCCC-cHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCe
Q 003192 522 LGDI--AVIGELKQLEILSLSSSDIEHL-PREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 522 l~~~--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
++.+ ..++++++|++|++++|.++.+ |..+.++++|++|++++| .+..+++ ..+.++++|+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--------------~~~~~l~~L~~ 156 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISH--------------RAFSGLNSLEQ 156 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECT--------------TSSTTCTTCCE
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeCh--------------hhccCCCCCCE
Confidence 7774 2477888888888888888755 556778888888888874 4444432 23567788888
Q ss_pred EEEEeecCccCCCcc--ccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhh
Q 003192 599 LEIHIQGAKILPRGL--FSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNV 676 (840)
Q Consensus 599 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 676 (840)
|+++.|.+..++... .+.+|+.|++. .+.....+...+..+++|+.|++++|.....+
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~--------------------~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLR--------------------HLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEE--------------------SCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCC--------------------CCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence 888888777766532 33444444443 23333333334445677888888877766655
Q ss_pred cccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCc
Q 003192 677 LNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLK 756 (840)
Q Consensus 677 ~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~ 756 (840)
+... ....+|++|++++|. +..++ ......+++|+.|+++++. +..++ +.....+++|+.|++++| +++
T Consensus 217 ~~~~--~~~~~L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~ 285 (477)
T 2id5_A 217 TPNC--LYGLNLTSLSITHCN-LTAVP----YLAVRHLVYLRFLNLSYNP-ISTIE--GSMLHELLRLQEIQLVGG-QLA 285 (477)
T ss_dssp CTTT--TTTCCCSEEEEESSC-CCSCC----HHHHTTCTTCCEEECCSSC-CCEEC--TTSCTTCTTCCEEECCSS-CCS
T ss_pred Cccc--ccCccccEEECcCCc-ccccC----HHHhcCccccCeeECCCCc-CCccC--hhhccccccCCEEECCCC-ccc
Confidence 5444 334578888888764 22221 1123567788888888743 55553 223456778888888874 577
Q ss_pred ccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccc
Q 003192 757 SILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLT 812 (840)
Q Consensus 757 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 812 (840)
.+++ ..+..+++|+.|++++| .++.+.... +..+++|+.|++++|+..
T Consensus 286 ~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~------~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 286 VVEP-YAFRGLNYLRVLNVSGN-QLTTLEESV------FHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EECT-TTBTTCTTCCEEECCSS-CCSCCCGGG------BSCGGGCCEEECCSSCEE
T ss_pred eECH-HHhcCcccCCEEECCCC-cCceeCHhH------cCCCcccCEEEccCCCcc
Confidence 7655 34567788888888875 555553322 235667777777777654
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.4e-24 Score=246.50 Aligned_cols=350 Identities=14% Similarity=0.102 Sum_probs=195.2
Q ss_pred ccccccEEeecccCCCCC-CCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCC--CchhhhcccCCc
Q 003192 438 TLKFCTAISLHKCDVNEL-PEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLS--LPSSLHLLVNLR 513 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~L~~L~ 513 (840)
.++++++|++++|.+..+ |..+ ++++|++|++++|.+. .+|.. .+++|++|++++|.+.. +|..++++++|+
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcce
Confidence 456777888888777665 3344 7778888888877765 55543 67778888888887774 467777888888
Q ss_pred EEEecCcccCCcccccCCCCC--CEEeccCCCC--C-CCcHHHhc--------------------------cCCCCEEec
Q 003192 514 TLCLDQSVLGDIAVIGELKQL--EILSLSSSDI--E-HLPREIGR--------------------------LSKLRLLDL 562 (840)
Q Consensus 514 ~L~L~~~~l~~~~~i~~L~~L--~~L~L~~~~l--~-~lp~~i~~--------------------------L~~L~~L~l 562 (840)
+|++++|.++. ..++.+++| ++|++++|.+ . ..|..+.. +++|+.|++
T Consensus 119 ~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 119 FLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp EEEEEESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred EEEecCcccch-hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 88888877765 345666666 8888877766 2 33443333 445555555
Q ss_pred CCCC-------CCcccc-----cccccccccccc---CChhh---hhcCCCCCeEEEEeecCc-cCCCcc------cc--
Q 003192 563 TNCS-------KLKSIP-----PNVERLNIERSN---ASLDE---LKHLSRLTTLEIHIQGAK-ILPRGL------FS-- 615 (840)
Q Consensus 563 ~~c~-------~l~~lp-----~~l~~L~~~~~~---~~~~~---l~~l~~L~~L~l~~~~~~-~~~~~~------~~-- 615 (840)
++|. ..+.+| ..+..|.+.... ..+.. ....++|++|++++|.+. .+|..+ .+
T Consensus 198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~ 277 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277 (520)
T ss_dssp EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred cccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence 5542 001111 001111111000 00000 001234444444444433 333221 11
Q ss_pred ------------------------ccCcEEEEEEcCcCCcC--CCCCCccEEEEeecCcccchhhHHHhhcccceeeecc
Q 003192 616 ------------------------KKLERYKILIGDEWDWH--GKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGE 669 (840)
Q Consensus 616 ------------------------~~L~~L~l~~~~~~~~~--~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 669 (840)
.+|+.|++..+...... ...+.++.|+++.+......+..+..+++|+.|++++
T Consensus 278 L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp EEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred eEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 23555555444322221 4556677777776665553333345577788888877
Q ss_pred cccch--hhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEE
Q 003192 670 LQDVK--NVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGII 747 (840)
Q Consensus 670 ~~~~~--~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L 747 (840)
|.... .++..+ ..+++|++|++++|.....++.. ....+++|+.|+++++.-...+ +.. ..++|+.|
T Consensus 358 N~l~~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~---~~~--l~~~L~~L 426 (520)
T 2z7x_B 358 NQLKELSKIAEMT--TQMKSLQQLDISQNSVSYDEKKG----DCSWTKSLLSLNMSSNILTDTI---FRC--LPPRIKVL 426 (520)
T ss_dssp SCCCBHHHHHHHH--TTCTTCCEEECCSSCCBCCGGGC----SCCCCTTCCEEECCSSCCCGGG---GGS--CCTTCCEE
T ss_pred CccCccccchHHH--hhCCCCCEEECCCCcCCcccccc----hhccCccCCEEECcCCCCCcch---hhh--hcccCCEE
Confidence 65443 333334 56777888888776533223221 2345677888888775432222 111 11578888
Q ss_pred EEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccccccccccccc
Q 003192 748 KVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTA 813 (840)
Q Consensus 748 ~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 813 (840)
++++| +++.+|. .+..+++|++|++++| .++.+... .+..+++|+.|++++|+...
T Consensus 427 ~Ls~N-~l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~~------~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 427 DLHSN-KIKSIPK--QVVKLEALQELNVASN-QLKSVPDG------IFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp ECCSS-CCCCCCG--GGGGCTTCCEEECCSS-CCCCCCTT------TTTTCTTCCEEECCSSCBCC
T ss_pred ECCCC-cccccch--hhhcCCCCCEEECCCC-cCCccCHH------HhccCCcccEEECcCCCCcc
Confidence 88775 5777655 3347778888888775 55554322 13456777777777777654
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=250.26 Aligned_cols=370 Identities=16% Similarity=0.224 Sum_probs=227.0
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCcEEEecCcc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~ 521 (840)
+.++-++.++..+|..+ .+++++|++++|.+.. ++...|.++++|++|++++|.+..+| ..|.++++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 44555566777788754 3689999999998854 44455899999999999999999775 579999999999999999
Q ss_pred cCCc--ccccCCCCCCEEeccCCCCCCCcH-HHhccCCCCEEecCCCCCCc-ccccccccc------cccccc---CChh
Q 003192 522 LGDI--AVIGELKQLEILSLSSSDIEHLPR-EIGRLSKLRLLDLTNCSKLK-SIPPNVERL------NIERSN---ASLD 588 (840)
Q Consensus 522 l~~~--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~-~lp~~l~~L------~~~~~~---~~~~ 588 (840)
++.+ ..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|..+..+ .+..+. ....
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 8873 579999999999999999998876 58999999999999964333 367665543 222221 1223
Q ss_pred hhhcCCCC----CeEEEEeecCccCCCcc-ccccCcEEEEEEcC------------------------------------
Q 003192 589 ELKHLSRL----TTLEIHIQGAKILPRGL-FSKKLERYKILIGD------------------------------------ 627 (840)
Q Consensus 589 ~l~~l~~L----~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~------------------------------------ 627 (840)
.++.+++| +.|+++.|.+..++... ...+|+.|++..+.
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 44445555 56666666655444332 11233333332210
Q ss_pred --------------------------cCCcCCCCCCccEEEEeecCcccchhhHH-------------------Hhhccc
Q 003192 628 --------------------------EWDWHGKYETSRTLKLMLNTRTCLENGTI-------------------MQLKGI 662 (840)
Q Consensus 628 --------------------------~~~~~~~~~~l~~l~L~~~~~~~~~~~~~-------------------~~l~~L 662 (840)
........+.++.+.+..+.....+.+.. ..+++|
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L 327 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSC
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCccccccc
Confidence 00111222344444444333322222211 123334
Q ss_pred ceeeecccccchhhcccccccccCCCcEEEeecCCCc-------------------------ceeecCCCCccCCCCCcc
Q 003192 663 EDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYI-------------------------LCIVDSVEGVACDAFPLL 717 (840)
Q Consensus 663 ~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l-------------------------~~l~~~~~~~~~~~~~~L 717 (840)
+.|++.++......+ ...+++|++|++++|... ..++. ....+++|
T Consensus 328 ~~L~l~~n~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~l~~L 398 (570)
T 2z63_A 328 KRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-----NFLGLEQL 398 (570)
T ss_dssp CEEEEESCBSCCBCC----CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-----EEETCTTC
T ss_pred CEEeCcCCccccccc----cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-----cccccCCC
Confidence 444443332211111 134455555555554311 11110 12345666
Q ss_pred ceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchh
Q 003192 718 ESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQE 797 (840)
Q Consensus 718 ~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 797 (840)
+.|+++++. +..... ......+++|+.|++++|. +...++ ..+..+++|++|++++|.-....++ ..+..
T Consensus 399 ~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p------~~~~~ 468 (570)
T 2z63_A 399 EHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLP------DIFTE 468 (570)
T ss_dssp CEEECTTSE-EESCTT-SCTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEEC------SCCTT
T ss_pred CEEEccCCc-cccccc-hhhhhcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccch------hhhhc
Confidence 666666543 222210 1234567788888888764 555444 3456778888888888743212222 23457
Q ss_pred hcccccccccccccccccccCcccccccceeecCCC
Q 003192 798 IELITPRGIQKCSLTAEAATNEITFSKLKSLSLSYL 833 (840)
Q Consensus 798 l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~c 833 (840)
+++|+.|++++|...+..|..+..+++|+.|+|++|
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 788999999999888877888889999999999887
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=5.7e-24 Score=237.26 Aligned_cols=335 Identities=13% Similarity=0.121 Sum_probs=253.9
Q ss_pred cccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEE
Q 003192 437 DTLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLC 516 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 516 (840)
..++++++|++++|.+..+|....+++|++|++++|.+.. +| ++.+++|++|++++|.++.+| ++.+++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 3467899999999999888865599999999999998854 44 789999999999999999886 89999999999
Q ss_pred ecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCC
Q 003192 517 LDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRL 596 (840)
Q Consensus 517 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L 596 (840)
+++|.++.++ ++.+++|++|++++|.++.+| ++.+++|++|++++|..++.++ +..+++|
T Consensus 113 L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~-----------------~~~l~~L 172 (457)
T 3bz5_A 113 CDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD-----------------VTPQTQL 172 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC-----------------CTTCTTC
T ss_pred CCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc-----------------cccCCcC
Confidence 9999998875 899999999999999999886 8899999999999987666653 4678889
Q ss_pred CeEEEEeecCccCCCccccccCcEEEEEEcCcCC-cCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchh
Q 003192 597 TTLEIHIQGAKILPRGLFSKKLERYKILIGDEWD-WHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKN 675 (840)
Q Consensus 597 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 675 (840)
+.|++++|.++.+| ...+++|+.|.+..+.... .....+.++.|++..+....+| +..+++|+.|++++|.....
T Consensus 173 ~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 173 TTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC
T ss_pred CEEECCCCccceec-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCc
Confidence 99999999888877 3367788888886554222 2445678888888887777765 55688999999998765432
Q ss_pred hcccccccccCCCcEEEee----------cCCCcceeecCCCCccCCCCCccceecccccccccccccc-----ccCccc
Q 003192 676 VLNELDAEGFLQLKHLHVQ----------NSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNG-----RLTAAS 740 (840)
Q Consensus 676 ~~~~l~~~~l~~L~~L~l~----------~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-----~~~~~~ 740 (840)
+ ...+++|+.|+++ +|..+..+ ..+.+++|+.|++++|..++.++.. ......
T Consensus 249 -~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 249 -D----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF-------QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp -C----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE-------ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred -C----HHHCCCCCEEeccCCCCCEEECCCCccCCcc-------cccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 2 2456666655554 44433333 3356899999999999877766421 112445
Q ss_pred CCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhcccc-----ccccccchhhccccccccccccccccc
Q 003192 741 FCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTE-----EERISSNQEIELITPRGIQKCSLTAEA 815 (840)
Q Consensus 741 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-----~~~~~~~~~l~~L~~L~l~~c~~l~~~ 815 (840)
+++|+.|++++ ++++.++ +..+++|+.|+++++ .++++.... .........+..|+.++++++...+.+
T Consensus 317 ~~~L~~L~L~~-N~l~~l~----l~~l~~L~~L~l~~N-~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 317 NPKLVYLYLNN-TELTELD----VSHNTKLKSLSCVNA-HIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp CTTCCEEECTT-CCCSCCC----CTTCTTCSEEECCSS-CCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEEC
T ss_pred cccCCEEECCC-Ccccccc----cccCCcCcEEECCCC-CCCCccccccccccCCcEEecceeeecCccccccCcEEEEc
Confidence 68888998888 4688862 578999999999884 555432111 111222234567888899999988888
Q ss_pred ccCc
Q 003192 816 ATNE 819 (840)
Q Consensus 816 ~~~l 819 (840)
|..+
T Consensus 391 p~~~ 394 (457)
T 3bz5_A 391 SPDL 394 (457)
T ss_dssp CTTC
T ss_pred ChhH
Confidence 8654
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=5.3e-24 Score=230.08 Aligned_cols=287 Identities=16% Similarity=0.228 Sum_probs=208.8
Q ss_pred ccccccccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccC
Q 003192 432 EWLDKDTLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVN 511 (840)
Q Consensus 432 ~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~ 511 (840)
..+....++++++|++++|.+..++....+++|++|++++|.+.. ++ .+.++++|++|++++|.+..+|. +..+++
T Consensus 58 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~ 133 (347)
T 4fmz_A 58 SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS--ALQNLTNLRELYLNEDNISDISP-LANLTK 133 (347)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTT
T ss_pred cchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch--HHcCCCcCCEEECcCCcccCchh-hccCCc
Confidence 344456678999999999999988885599999999999998753 44 38999999999999999999887 899999
Q ss_pred CcEEEecCcc-cCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhh
Q 003192 512 LRTLCLDQSV-LGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDEL 590 (840)
Q Consensus 512 L~~L~L~~~~-l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l 590 (840)
|++|++++|. +..++.++.+++|++|++++|.+..++. +..+++|++|++++| .+..++. +
T Consensus 134 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~----------------~ 195 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP----------------L 195 (347)
T ss_dssp CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG----------------G
T ss_pred eeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc----------------c
Confidence 9999999995 5667889999999999999999998887 899999999999995 4555543 6
Q ss_pred hcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeeccc
Q 003192 591 KHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGEL 670 (840)
Q Consensus 591 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 670 (840)
..+++|+.|++++|.+..++.. ..+++|+.|++++|
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~--------------------------------------------~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITPV--------------------------------------------ANMTRLNSLKIGNN 231 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGGG--------------------------------------------GGCTTCCEEECCSS
T ss_pred cCCCccceeecccCCCCCCchh--------------------------------------------hcCCcCCEEEccCC
Confidence 7889999999998877655432 22456666666665
Q ss_pred ccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEe
Q 003192 671 QDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVG 750 (840)
Q Consensus 671 ~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~ 750 (840)
.... .+. + ..+++|++|++++|. +..+ .....+++|+.|+++++ .+..++ ....+++|+.|+++
T Consensus 232 ~l~~-~~~-~--~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~l~~n-~l~~~~----~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 232 KITD-LSP-L--ANLSQLTWLEIGTNQ-ISDI------NAVKDLTKLKMLNVGSN-QISDIS----VLNNLSQLNSLFLN 295 (347)
T ss_dssp CCCC-CGG-G--TTCTTCCEEECCSSC-CCCC------GGGTTCTTCCEEECCSS-CCCCCG----GGGGCTTCSEEECC
T ss_pred ccCC-Ccc-h--hcCCCCCEEECCCCc-cCCC------hhHhcCCCcCEEEccCC-ccCCCh----hhcCCCCCCEEECc
Confidence 4332 222 2 556777777777653 2222 12345677777777764 444441 23457777777777
Q ss_pred cCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccccccccccc
Q 003192 751 NCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSL 811 (840)
Q Consensus 751 ~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 811 (840)
+| .++..++ ..+..+++|++|++++|+ +..+.+ +..+++|+.|++++|+.
T Consensus 296 ~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~--------~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 296 NN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP--------LASLSKMDSADFANQVI 345 (347)
T ss_dssp SS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG--------GGGCTTCSEESSSCC--
T ss_pred CC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC--------hhhhhccceeehhhhcc
Confidence 76 3655544 345677777778777764 444432 24567777777777764
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.4e-24 Score=250.38 Aligned_cols=376 Identities=13% Similarity=0.138 Sum_probs=245.5
Q ss_pred EeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCcEEEecCcccC
Q 003192 445 ISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLRTLCLDQSVLG 523 (840)
Q Consensus 445 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~ 523 (840)
.+.+++.+..+|..+. ++|++|++++|.+....| ..|.++++|++|++++|.+..+| ..|+.+++|++|++++|.++
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccCC-CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 5667788888888653 899999999999864444 44899999999999999999775 68999999999999999998
Q ss_pred C-cc-cccCCCCCCEEeccCCCCCC--CcHHHhccCCCCEEecCCCCCCccccc-ccccc------cccc---ccCChhh
Q 003192 524 D-IA-VIGELKQLEILSLSSSDIEH--LPREIGRLSKLRLLDLTNCSKLKSIPP-NVERL------NIER---SNASLDE 589 (840)
Q Consensus 524 ~-~~-~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~c~~l~~lp~-~l~~L------~~~~---~~~~~~~ 589 (840)
. ++ .++++++|++|++++|.++. .|..++++++|++|++++|..++.+|. .+..+ .+.. .+..+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 8 33 49999999999999999985 467799999999999999876777774 33322 2222 1223456
Q ss_pred hhcCCCCCeEEEEeecCccCCCcc--ccccCcEEEEEEcCcCC-------cCCCCCCccEEEEeecCcccchh-h-----
Q 003192 590 LKHLSRLTTLEIHIQGAKILPRGL--FSKKLERYKILIGDEWD-------WHGKYETSRTLKLMLNTRTCLEN-G----- 654 (840)
Q Consensus 590 l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~-------~~~~~~~l~~l~L~~~~~~~~~~-~----- 654 (840)
++.+++|++|+++.|.+..+|... .+++|+.|++..+.... .......++.+.+..+....... .
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 677777778888777766666544 46788888887654222 11223455556555432221100 0
Q ss_pred ---------------------------------------------------------HHHhhcccceeeecccccchhhc
Q 003192 655 ---------------------------------------------------------TIMQLKGIEDLYLGELQDVKNVL 677 (840)
Q Consensus 655 ---------------------------------------------------------~~~~l~~L~~L~l~~~~~~~~~~ 677 (840)
.....++|+.|+++++.. +.++
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip 326 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVP 326 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCC
T ss_pred hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCC
Confidence 011223444444444332 2222
Q ss_pred ccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcc
Q 003192 678 NELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKS 757 (840)
Q Consensus 678 ~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~ 757 (840)
..+ ...+++|++|++++|.....++... ...+.+++|+.|+++++ .++.++........+++|++|++++| +++.
T Consensus 327 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 401 (549)
T 2z81_A 327 CSF-SQHLKSLEFLDLSENLMVEEYLKNS--ACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHP 401 (549)
T ss_dssp HHH-HHHCTTCCEEECCSSCCCHHHHHHH--TCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCC
T ss_pred HHH-HhcCccccEEEccCCccccccccch--hhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCcc
Confidence 221 1356778888887766433221100 11356788888888884 45554311122456888888888885 6777
Q ss_pred cccHHHhhhcccCcEEEEcccccchhhcccccc----------ccc-cchhhcccccccccccccccccccCcccccccc
Q 003192 758 ILSVSIARGLQQLQVIDVTECKSMEVILGTEEE----------RIS-SNQEIELITPRGIQKCSLTAEAATNEITFSKLK 826 (840)
Q Consensus 758 l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~----------~~~-~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~ 826 (840)
+|. .+..+++|++|++++|. +..+...... .+. ....++.|+.|++++|... .+|. ...+++|+
T Consensus 402 lp~--~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~ 476 (549)
T 2z81_A 402 MPD--SCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLL 476 (549)
T ss_dssp CCS--CCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCC
T ss_pred CCh--hhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCC
Confidence 765 45677888888888763 4433211000 000 0125677888888888654 6665 45688888
Q ss_pred eeecCCC
Q 003192 827 SLSLSYL 833 (840)
Q Consensus 827 ~L~L~~c 833 (840)
.|+|+++
T Consensus 477 ~L~Ls~N 483 (549)
T 2z81_A 477 VMKISRN 483 (549)
T ss_dssp EEECCSS
T ss_pred EEecCCC
Confidence 8888876
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=7.9e-24 Score=255.53 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=116.0
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcC-CCC-chhhhcccCCcEEEecCc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHL-LSL-PSSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l-p~~i~~L~~L~~L~L~~~ 520 (840)
+.++.+++++..+|. -.++|++|++++|.+....+. .|.++++|++|++++|.. ..+ |..|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 356677788899998 568999999999998654444 489999999999999954 456 778999999999999999
Q ss_pred ccCC--cccccCCCCCCEEeccCCCCCC-CcHH--HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCC
Q 003192 521 VLGD--IAVIGELKQLEILSLSSSDIEH-LPRE--IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSR 595 (840)
Q Consensus 521 ~l~~--~~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~ 595 (840)
.+.. +..++++++|++|+|++|.++. +|.. ++++++|++|++++|. +..++.. ..++++++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~-------------~~~~~L~~ 149 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLH-------------PSFGKLNS 149 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCC-------------GGGGTCSS
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccc-------------hhHhhCCC
Confidence 9987 5779999999999999999985 5665 8999999999999964 4433210 12445555
Q ss_pred CCeEEEEeecCc
Q 003192 596 LTTLEIHIQGAK 607 (840)
Q Consensus 596 L~~L~l~~~~~~ 607 (840)
|++|++++|.+.
T Consensus 150 L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 150 LKSIDFSSNQIF 161 (844)
T ss_dssp CCEEEEESSCCC
T ss_pred CCEEECCCCcCC
Confidence 555555555544
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.9e-23 Score=239.50 Aligned_cols=367 Identities=15% Similarity=0.132 Sum_probs=193.3
Q ss_pred cccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEE
Q 003192 439 LKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLC 516 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 516 (840)
.+++++|++++|.+..++. .+ ++++|++|++++|.+.. +++..|.++++|++|++++|.++.+|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 3566777777777766653 23 66777777777766643 3333466677777777777777766665 667777777
Q ss_pred ecCcccCC---cccccCCCCCCEEeccCCCCCCCcHHHhccCCC--CEEecCCCCC--Cccccccccccc-----c--cc
Q 003192 517 LDQSVLGD---IAVIGELKQLEILSLSSSDIEHLPREIGRLSKL--RLLDLTNCSK--LKSIPPNVERLN-----I--ER 582 (840)
Q Consensus 517 L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L--~~L~l~~c~~--l~~lp~~l~~L~-----~--~~ 582 (840)
+++|.++. +..++++++|++|++++|.++.. .+..+++| ++|++++|.. ....|..+..+. + ..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 77777655 24567777777777777766642 24445555 7777766544 344455444432 0 00
Q ss_pred cc--------------------------------CChhhhhcCCCCCeEEEEeecCc-----cCCCccccccCcEEEEEE
Q 003192 583 SN--------------------------------ASLDELKHLSRLTTLEIHIQGAK-----ILPRGLFSKKLERYKILI 625 (840)
Q Consensus 583 ~~--------------------------------~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~ 625 (840)
+. ..+..+..+++|+.|++..+.+. .++......+|+.|++..
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 00 00112223333333333322211 111111222455555543
Q ss_pred cCcC----CcC-----CCCC--------------------------CccEEEEeecCcccchhhHHHhhcccceeeeccc
Q 003192 626 GDEW----DWH-----GKYE--------------------------TSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGEL 670 (840)
Q Consensus 626 ~~~~----~~~-----~~~~--------------------------~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 670 (840)
+... ... .... .++.+.+..+...... ....+++|+.|++++|
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCC
Confidence 3211 000 1111 2333333332221111 0134566777777666
Q ss_pred ccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceecccccccccc-ccccccCcccCCCCCEEEE
Q 003192 671 QDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEK-ICNGRLTAASFCNLGIIKV 749 (840)
Q Consensus 671 ~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~-i~~~~~~~~~l~~L~~L~l 749 (840)
......+..+ ..+++|+.|++++|. +..++. .......+++|+.|+++++. +.. ++. .....+++|+.|++
T Consensus 364 ~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~--~~~~~~~l~~L~~L~l~~N~-l~~~~~~--~~~~~l~~L~~L~l 435 (562)
T 3a79_B 364 VFTDSVFQGC--STLKRLQTLILQRNG-LKNFFK--VALMTKNMSSLETLDVSLNS-LNSHAYD--RTCAWAESILVLNL 435 (562)
T ss_dssp CCCTTTTTTC--CSCSSCCEEECCSSC-CCBTTH--HHHTTTTCTTCCEEECTTSC-CBSCCSS--CCCCCCTTCCEEEC
T ss_pred ccccchhhhh--cccCCCCEEECCCCC-cCCccc--chhhhcCCCCCCEEECCCCc-CCCccCh--hhhcCcccCCEEEC
Confidence 5554444444 566777777777653 221110 00123456777777777643 332 421 12335677777777
Q ss_pred ecCCCCcccccHHHhhhc-ccCcEEEEcccccchhhccccccccccchhhcccccccccccccccccccC-cccccccce
Q 003192 750 GNCNKLKSILSVSIARGL-QQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATN-EITFSKLKS 827 (840)
Q Consensus 750 ~~C~~L~~l~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-l~~l~~L~~ 827 (840)
++|. ++...+ ..+ ++|++|++++| .++.++. .+..+++|+.|++++|... .+|.. +..+++|+.
T Consensus 436 ~~n~-l~~~~~----~~l~~~L~~L~L~~N-~l~~ip~-------~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 436 SSNM-LTGSVF----RCLPPKVKVLDLHNN-RIMSIPK-------DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY 501 (562)
T ss_dssp CSSC-CCGGGG----SSCCTTCSEEECCSS-CCCCCCT-------TTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCC
T ss_pred CCCC-CCcchh----hhhcCcCCEEECCCC-cCcccCh-------hhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCE
Confidence 7753 543322 223 57777777775 5554422 1225678888888887765 56665 778888888
Q ss_pred eecCCCC
Q 003192 828 LSLSYLP 834 (840)
Q Consensus 828 L~L~~cp 834 (840)
|+++++|
T Consensus 502 L~l~~N~ 508 (562)
T 3a79_B 502 IWLHDNP 508 (562)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 8888875
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5.8e-24 Score=233.61 Aligned_cols=304 Identities=14% Similarity=0.149 Sum_probs=191.9
Q ss_pred cccccEEeecccCCCCCCCcC--CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEE
Q 003192 439 LKFCTAISLHKCDVNELPEEL--ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTL 515 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L 515 (840)
+.++++++++++.+..+|... .+++|++|++++|.+. .++...|.++++|++|++++|.+..+|+ .++.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 456677777777776666643 6677777777766653 3444446677777777777777766543 46677777777
Q ss_pred EecCcccCCcc-c-ccCCCCCCEEeccCCCCCCCc-HHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhc
Q 003192 516 CLDQSVLGDIA-V-IGELKQLEILSLSSSDIEHLP-REIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKH 592 (840)
Q Consensus 516 ~L~~~~l~~~~-~-i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~ 592 (840)
++++|.++.++ . ++++++|++|++++|.++.++ ..++++++|++|++++| .++.++ +..
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-----------------~~~ 184 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD-----------------LSL 184 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC-----------------GGG
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc-----------------ccc
Confidence 77777766632 2 466777777777777776553 34666777777777763 333332 345
Q ss_pred CCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeeccccc
Q 003192 593 LSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQD 672 (840)
Q Consensus 593 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 672 (840)
+++|+.|+++.|.+..++. ...++.+++..+.....+.. ..++|+.|++++|..
T Consensus 185 l~~L~~L~l~~n~l~~~~~-----------------------~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLAI-----------------------PIAVEELDASHNSINVVRGP---VNVELTILKLQHNNL 238 (390)
T ss_dssp CTTCSEEECCSSCCSEEEC-----------------------CSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCC
T ss_pred ccccceeecccccccccCC-----------------------CCcceEEECCCCeeeecccc---ccccccEEECCCCCC
Confidence 5667777776665544331 12334444444443333322 246788888888764
Q ss_pred chhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecC
Q 003192 673 VKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNC 752 (840)
Q Consensus 673 ~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C 752 (840)
.. . ..+ ..+++|++|++++|... .+.. .....+++|+.|+++++ .++.+ +.....+++|+.|++++|
T Consensus 239 ~~-~-~~l--~~l~~L~~L~Ls~n~l~-~~~~----~~~~~l~~L~~L~L~~n-~l~~~---~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 239 TD-T-AWL--LNYPGLVEVDLSYNELE-KIMY----HPFVKMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CC-C-GGG--GGCTTCSEEECCSSCCC-EEES----GGGTTCSSCCEEECCSS-CCCEE---ECSSSCCTTCCEEECCSS
T ss_pred cc-c-HHH--cCCCCccEEECCCCcCC-CcCh----hHccccccCCEEECCCC-cCccc---CcccCCCCCCCEEECCCC
Confidence 43 2 233 67888899998887533 2211 13356788888888884 56666 344456888999999886
Q ss_pred CCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccccccccccccc
Q 003192 753 NKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTA 813 (840)
Q Consensus 753 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 813 (840)
+++.+++ .+..+++|++|++++|+ +..+. +..+++|+.|++++|+...
T Consensus 306 -~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~---------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 306 -HLLHVER--NQPQFDRLENLYLDHNS-IVTLK---------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp -CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC---------CCTTCCCSEEECCSSCEEH
T ss_pred -cceecCc--cccccCcCCEEECCCCc-cceeC---------chhhccCCEEEcCCCCccc
Confidence 5777765 35678889999998863 44441 2356677788888877554
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=9.8e-24 Score=237.15 Aligned_cols=341 Identities=14% Similarity=0.130 Sum_probs=249.7
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCC-CC-chhhhcccCCcEEEecCc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLL-SL-PSSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-p~~i~~L~~L~~L~L~~~ 520 (840)
+.++.+++.+..+|. -.++|++|++++|.+....| ..|.++++|++|++++|.+. .+ |..|..+++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 356677778888887 23899999999999865444 45899999999999999986 45 567999999999999999
Q ss_pred ccCC--cccccCCCCCCEEeccCCCCCC-CcHH--HhccCCCCEEecCCCCCCccc-cccccccccccccCChhhhhcCC
Q 003192 521 VLGD--IAVIGELKQLEILSLSSSDIEH-LPRE--IGRLSKLRLLDLTNCSKLKSI-PPNVERLNIERSNASLDELKHLS 594 (840)
Q Consensus 521 ~l~~--~~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~c~~l~~l-p~~l~~L~~~~~~~~~~~l~~l~ 594 (840)
.++. +..++++++|++|++++|.++. +|.. ++++++|++|++++|. +..+ |..+ +.+++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--------------~~~l~ 154 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASF--------------FLNMR 154 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGG--------------GGGCT
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccc--------------cCCCC
Confidence 9877 4679999999999999999985 4554 8899999999999964 4444 4322 67899
Q ss_pred CCCeEEEEeecCccCCCcc--cc--ccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhH--------HHhhccc
Q 003192 595 RLTTLEIHIQGAKILPRGL--FS--KKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGT--------IMQLKGI 662 (840)
Q Consensus 595 ~L~~L~l~~~~~~~~~~~~--~~--~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~--------~~~l~~L 662 (840)
+|++|++++|.+..++... .+ .+|+.|.+ ..+.....+... ...+++|
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l--------------------~~n~l~~~~~~~~~~~~~~~~~~~~~L 214 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL--------------------SSITLQDMNEYWLGWEKCGNPFKNTSI 214 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC--------------------TTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred cccEEeCCCCcccccChhhhhcccccccccccc--------------------ccCcccccchhhcccccccccccccee
Confidence 9999999999987765432 11 23333333 222222222111 1235789
Q ss_pred ceeeecccccchhhcccccc-cccCCCcEEEeecCCCcceeecCC-------CCccCCCCCccceecccccccccccccc
Q 003192 663 EDLYLGELQDVKNVLNELDA-EGFLQLKHLHVQNSPYILCIVDSV-------EGVACDAFPLLESLFLHNLTNLEKICNG 734 (840)
Q Consensus 663 ~~L~l~~~~~~~~~~~~l~~-~~l~~L~~L~l~~~~~l~~l~~~~-------~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 734 (840)
+.|++++|......+..+.. ...++|+.|++++|.......... ..+....+++|+.|+++++. +..+.
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~-- 291 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALL-- 291 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEEC--
T ss_pred eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccc--
Confidence 99999998776655554411 123889999999886443211100 01111234689999999864 44442
Q ss_pred ccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhcccccccccccccccc
Q 003192 735 RLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAE 814 (840)
Q Consensus 735 ~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 814 (840)
+.....+++|++|++++| +++.+++ ..+..+++|++|++++| .+..+.+. .+..+++|+.|++++|.....
T Consensus 292 ~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQN-EINKIDD-NAFWGLTHLLKLNLSQN-FLGSIDSR------MFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEECGG------GGTTCTTCCEEECCSSCCCEE
T ss_pred hhhcccCCCCCEEECCCC-cccccCh-hHhcCcccCCEEECCCC-ccCCcChh------HhcCcccCCEEECCCCccccc
Confidence 444567999999999996 5888765 35678999999999997 55555332 335788999999999998888
Q ss_pred cccCcccccccceeecCCC
Q 003192 815 AATNEITFSKLKSLSLSYL 833 (840)
Q Consensus 815 ~~~~l~~l~~L~~L~L~~c 833 (840)
.|..+..+++|++|+|+++
T Consensus 363 ~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred ChhhccccccccEEECCCC
Confidence 8889999999999999886
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=9.5e-24 Score=244.89 Aligned_cols=304 Identities=14% Similarity=0.153 Sum_probs=183.3
Q ss_pred cccccEEeecccCCCCCCCcC--CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEE
Q 003192 439 LKFCTAISLHKCDVNELPEEL--ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTL 515 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L 515 (840)
+.+++.++++++.+..+|... .+++|++|++++|.+. .++...|+++++|++|+|++|.+..+|+ .|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345566666666666555543 5666666666666553 2333335666666666666666665543 34666666666
Q ss_pred EecCcccCCc-cc-ccCCCCCCEEeccCCCCCCCcH-HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhc
Q 003192 516 CLDQSVLGDI-AV-IGELKQLEILSLSSSDIEHLPR-EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKH 592 (840)
Q Consensus 516 ~L~~~~l~~~-~~-i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~ 592 (840)
+|++|.++.+ +. ++++++|++|++++|.++.+|. .++++++|++|++++| .+..+| ++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-----------------~~~ 190 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD-----------------LSL 190 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC-----------------GGG
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC-----------------hhh
Confidence 6666666552 22 4566666666666666664433 3566666666666663 333332 234
Q ss_pred CCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeeccccc
Q 003192 593 LSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQD 672 (840)
Q Consensus 593 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 672 (840)
+++|+.|++++|.+..++ ....++.|.+..+.....+... .++|+.|++++|..
T Consensus 191 l~~L~~L~l~~n~l~~l~-----------------------~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l 244 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLA-----------------------IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNL 244 (597)
T ss_dssp CTTCSEEECCSSCCSEEE-----------------------CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCC
T ss_pred hhhhhhhhcccCcccccc-----------------------CCchhheeeccCCccccccccc---CCCCCEEECCCCCC
Confidence 555666666655544332 2233444444444444333322 35788888888765
Q ss_pred chhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecC
Q 003192 673 VKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNC 752 (840)
Q Consensus 673 ~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C 752 (840)
.. +..+ ..+++|+.|++++|......+. ....+++|+.|++++ +.+..+ +.....+|+|+.|++++|
T Consensus 245 ~~--~~~l--~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~Ls~-N~l~~l---~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 245 TD--TAWL--LNYPGLVEVDLSYNELEKIMYH-----PFVKMQRLERLYISN-NRLVAL---NLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CC--CGGG--GGCTTCSEEECCSSCCCEEESG-----GGTTCSSCCEEECTT-SCCCEE---ECSSSCCTTCCEEECCSS
T ss_pred CC--Chhh--ccCCCCCEEECCCCccCCCCHH-----HhcCccCCCEEECCC-CCCCCC---CcccccCCCCcEEECCCC
Confidence 43 2333 6788899999988764332221 335678899999988 456666 444466889999999985
Q ss_pred CCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccccccccccccc
Q 003192 753 NKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTA 813 (840)
Q Consensus 753 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 813 (840)
.+..+|+ .+..+++|+.|++++|+ +..+. +..+++|+.|++++|+...
T Consensus 312 -~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~---------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 312 -HLLHVER--NQPQFDRLENLYLDHNS-IVTLK---------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp -CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC---------CCTTCCCSEEECCSSCEEH
T ss_pred -CCCccCc--ccccCCCCCEEECCCCC-CCCcC---------hhhcCCCCEEEeeCCCCCC
Confidence 5777765 45778899999998864 44431 2356778888888887654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.7e-23 Score=228.25 Aligned_cols=279 Identities=17% Similarity=0.225 Sum_probs=221.1
Q ss_pred ccccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchh-hhcccCCcE
Q 003192 438 TLKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSS-LHLLVNLRT 514 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~ 514 (840)
.+++++.|++++|.+..++. .+ .+++|++|++++|.+. .+++..|.++++|++|++++|.+..+|.. +..+++|++
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 45789999999999987765 34 8999999999999885 45555689999999999999999999886 589999999
Q ss_pred EEecCcccCCc--ccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhc
Q 003192 515 LCLDQSVLGDI--AVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKH 592 (840)
Q Consensus 515 L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~ 592 (840)
|++++|.++.+ ..++++++|++|++++|.++.++ ++.+++|++|++++| .+..++ .
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n-~l~~~~-------------------~ 203 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTLA-------------------I 203 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSS-CCSEEE-------------------C
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccc-cccccC-------------------C
Confidence 99999998873 45999999999999999999886 678999999999985 444432 3
Q ss_pred CCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeeccccc
Q 003192 593 LSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQD 672 (840)
Q Consensus 593 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 672 (840)
.++|+.|++++|.+..+|... ..+|+.|++ ..+..... ..+..+++|+.|++++|..
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l--------------------~~n~l~~~--~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPV-NVELTILKL--------------------QHNNLTDT--AWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCC-CSSCCEEEC--------------------CSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred CCcceEEECCCCeeeeccccc-cccccEEEC--------------------CCCCCccc--HHHcCCCCccEEECCCCcC
Confidence 458999999999988776542 345555554 33333332 2355689999999999876
Q ss_pred chhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecC
Q 003192 673 VKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNC 752 (840)
Q Consensus 673 ~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C 752 (840)
....+..+ ..+++|++|++++|. +..++. ....+++|+.|+++++ .+..+ +.....+++|+.|++++|
T Consensus 261 ~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~-----~~~~l~~L~~L~L~~n-~l~~~---~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 261 EKIMYHPF--VKMQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSHN-HLLHV---ERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CEEESGGG--TTCSSCCEEECCSSC-CCEEEC-----SSSCCTTCCEEECCSS-CCCCC---GGGHHHHTTCSEEECCSS
T ss_pred CCcChhHc--cccccCCEEECCCCc-CcccCc-----ccCCCCCCCEEECCCC-cceec---CccccccCcCCEEECCCC
Confidence 65555555 779999999999975 444432 2256899999999996 56666 444567899999999996
Q ss_pred CCCcccccHHHhhhcccCcEEEEcccc
Q 003192 753 NKLKSILSVSIARGLQQLQVIDVTECK 779 (840)
Q Consensus 753 ~~L~~l~~~~~~~~l~~L~~L~l~~c~ 779 (840)
.++.++ +..+++|+.|++++++
T Consensus 329 -~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 329 -SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCCC----CCTTCCCSEEECCSSC
T ss_pred -ccceeC----chhhccCCEEEcCCCC
Confidence 588774 4678999999999864
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.7e-22 Score=233.02 Aligned_cols=352 Identities=14% Similarity=0.079 Sum_probs=238.0
Q ss_pred cccccccEEeecccCCCCCC-CcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc--hhhhcccCC
Q 003192 437 DTLKFCTAISLHKCDVNELP-EEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP--SSLHLLVNL 512 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~L~~L 512 (840)
..++++++|++++|.+..++ ..+ ++++|++|++++|.+. .+|.. .+++|++|++++|.+..+| ..++++++|
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 45678999999999998774 444 8999999999999986 67765 8999999999999999764 799999999
Q ss_pred cEEEecCcccCCcccccCCCCC--CEEeccCCCC--C-CCcHHHhccC--------------------------CCCEEe
Q 003192 513 RTLCLDQSVLGDIAVIGELKQL--EILSLSSSDI--E-HLPREIGRLS--------------------------KLRLLD 561 (840)
Q Consensus 513 ~~L~L~~~~l~~~~~i~~L~~L--~~L~L~~~~l--~-~lp~~i~~L~--------------------------~L~~L~ 561 (840)
++|++++|.++. ..++.+++| ++|++++|.+ + ..|..+..+. +|+.|+
T Consensus 149 ~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 149 TFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp CEEEEECSBCCT-TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred cEEecCCCcccc-CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 999999999876 234555555 9999999988 5 4566677665 344444
Q ss_pred cCCCCC-Cccccc---------ccccccccccc---C---ChhhhhcCCCCCeEEEEeecCc-cCCCccc----------
Q 003192 562 LTNCSK-LKSIPP---------NVERLNIERSN---A---SLDELKHLSRLTTLEIHIQGAK-ILPRGLF---------- 614 (840)
Q Consensus 562 l~~c~~-l~~lp~---------~l~~L~~~~~~---~---~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~---------- 614 (840)
+++|.. ...++. .+..+.+.... . .+......++|++|+++.|.+. .+|..+.
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 444310 000000 01111111110 0 0111122347777777777765 5554431
Q ss_pred ----------------------cccCcEEEEEEcCcCCcC--CCCCCccEEEEeecCcccchhhHHHhhcccceeeeccc
Q 003192 615 ----------------------SKKLERYKILIGDEWDWH--GKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGEL 670 (840)
Q Consensus 615 ----------------------~~~L~~L~l~~~~~~~~~--~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 670 (840)
..+|+.|++..+...... ...+.++.|++..+......+..+..+++|+.|++++|
T Consensus 308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 123555555544432222 56678899999987776644445567899999999987
Q ss_pred ccch--hhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccC-CCCCEE
Q 003192 671 QDVK--NVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASF-CNLGII 747 (840)
Q Consensus 671 ~~~~--~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l-~~L~~L 747 (840)
.... ..+..+ ..+++|++|++++|.....++.. ....+++|+.|+++++.--..+ + ..+ ++|+.|
T Consensus 388 ~l~~~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~---~---~~l~~~L~~L 455 (562)
T 3a79_B 388 GLKNFFKVALMT--KNMSSLETLDVSLNSLNSHAYDR----TCAWAESILVLNLSSNMLTGSV---F---RCLPPKVKVL 455 (562)
T ss_dssp CCCBTTHHHHTT--TTCTTCCEEECTTSCCBSCCSSC----CCCCCTTCCEEECCSSCCCGGG---G---SSCCTTCSEE
T ss_pred CcCCcccchhhh--cCCCCCCEEECCCCcCCCccChh----hhcCcccCCEEECCCCCCCcch---h---hhhcCcCCEE
Confidence 6543 333344 77899999999998743223221 3456789999999986532222 1 123 699999
Q ss_pred EEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccccccccccccccc
Q 003192 748 KVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEA 815 (840)
Q Consensus 748 ~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 815 (840)
++++| +++.+|+ .+..+++|++|++++| .++.++.. .+..+++|+.+++++|+.....
T Consensus 456 ~L~~N-~l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~~------~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 456 DLHNN-RIMSIPK--DVTHLQALQELNVASN-QLKSVPDG------VFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp ECCSS-CCCCCCT--TTTSSCCCSEEECCSS-CCCCCCTT------STTTCTTCCCEECCSCCBCCCH
T ss_pred ECCCC-cCcccCh--hhcCCCCCCEEECCCC-CCCCCCHH------HHhcCCCCCEEEecCCCcCCCc
Confidence 99996 7998876 3448999999999986 66665432 1346788999999999876543
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=228.82 Aligned_cols=295 Identities=19% Similarity=0.221 Sum_probs=209.7
Q ss_pred cccccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCc
Q 003192 437 DTLKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLR 513 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~ 513 (840)
..+..++.|++++|.+..++. .+ ++++|++|++++|.+....| ..|.++++|++|+|++|.+..+|. .|.++++|+
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 346789999999999988754 34 89999999999998865444 458999999999999999999986 578999999
Q ss_pred EEEecCcccCC--cccccCCCCCCEEeccCCCCCCC-cHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhh
Q 003192 514 TLCLDQSVLGD--IAVIGELKQLEILSLSSSDIEHL-PREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDEL 590 (840)
Q Consensus 514 ~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l 590 (840)
+|+|++|.+.. +..+.++++|++|++++|.++.+ |..+.++++|++|++++| .+..+|. ..+
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--------------~~l 172 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPT--------------EAL 172 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCH--------------HHH
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccCh--------------hHh
Confidence 99999999887 35699999999999999999966 557899999999999995 5666664 347
Q ss_pred hcCCCCCeEEEEeecCccCCCcc--ccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeec
Q 003192 591 KHLSRLTTLEIHIQGAKILPRGL--FSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLG 668 (840)
Q Consensus 591 ~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~ 668 (840)
.++++|+.|+++.|.+..++... .+.+|+.|++..+.... ..+...+. ..+|+.|+++
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~-------------------~~~~~~~~-~~~L~~L~l~ 232 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-------------------TMTPNCLY-GLNLTSLSIT 232 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC-------------------EECTTTTT-TCCCSEEEEE
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc-------------------ccCccccc-CccccEEECc
Confidence 88999999999999998777643 56677777776443211 11111111 2366777776
Q ss_pred ccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEE
Q 003192 669 ELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIK 748 (840)
Q Consensus 669 ~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~ 748 (840)
+|.........+ ..+++|+.|++++|. +..++.. ....+++|+.|+++++ .+..+. +.....+++|+.|+
T Consensus 233 ~n~l~~~~~~~~--~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 233 HCNLTAVPYLAV--RHLVYLRFLNLSYNP-ISTIEGS----MLHELLRLQEIQLVGG-QLAVVE--PYAFRGLNYLRVLN 302 (477)
T ss_dssp SSCCCSCCHHHH--TTCTTCCEEECCSSC-CCEECTT----SCTTCTTCCEEECCSS-CCSEEC--TTTBTTCTTCCEEE
T ss_pred CCcccccCHHHh--cCccccCeeECCCCc-CCccChh----hccccccCCEEECCCC-ccceEC--HHHhcCcccCCEEE
Confidence 654332111222 556777777777654 3333211 2345667777777763 344442 33345667777777
Q ss_pred EecCCCCcccccHHHhhhcccCcEEEEcccc
Q 003192 749 VGNCNKLKSILSVSIARGLQQLQVIDVTECK 779 (840)
Q Consensus 749 l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 779 (840)
+++| +++.+++ ..+..+++|++|++++++
T Consensus 303 L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 303 VSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred CCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 7774 5776655 345667777777777654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=9.3e-23 Score=236.55 Aligned_cols=279 Identities=16% Similarity=0.215 Sum_probs=220.5
Q ss_pred ccccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchh-hhcccCCcE
Q 003192 438 TLKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSS-LHLLVNLRT 514 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~ 514 (840)
.+++++.|++++|.+..++. .+ .+++|++|++++|.+. .+++..|+++++|++|+|++|.+..+|.. |+++++|++
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 35789999999999987765 34 8999999999999885 46666689999999999999999999876 589999999
Q ss_pred EEecCcccCC--cccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhc
Q 003192 515 LCLDQSVLGD--IAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKH 592 (840)
Q Consensus 515 L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~ 592 (840)
|+|++|.++. +..++++++|++|++++|.++.+| ++.+++|++|++++| .+..+ ..
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n-~l~~l-------------------~~ 209 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTL-------------------AI 209 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS-CCSEE-------------------EC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC-ccccc-------------------cC
Confidence 9999999987 346999999999999999999886 678999999999985 44433 34
Q ss_pred CCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeeccccc
Q 003192 593 LSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQD 672 (840)
Q Consensus 593 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 672 (840)
.++|+.|++++|.+..++... ..+|+.|++ ..+..... ..+..+++|+.|++++|..
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L--------------------~~n~l~~~--~~l~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV-NVELTILKL--------------------QHNNLTDT--AWLLNYPGLVEVDLSYNEL 266 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC-CSCCCEEEC--------------------CSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred CchhheeeccCCccccccccc-CCCCCEEEC--------------------CCCCCCCC--hhhccCCCCCEEECCCCcc
Confidence 568999999999988776553 244555544 33333322 3355689999999999876
Q ss_pred chhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecC
Q 003192 673 VKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNC 752 (840)
Q Consensus 673 ~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C 752 (840)
....+..+ ..+++|+.|+|++|. +..++. ....+|+|+.|+++++ .+..+ +.....+++|+.|++++|
T Consensus 267 ~~~~~~~~--~~l~~L~~L~Ls~N~-l~~l~~-----~~~~l~~L~~L~Ls~N-~l~~i---~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 267 EKIMYHPF--VKMQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSHN-HLLHV---ERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CEEESGGG--TTCSSCCEEECTTSC-CCEEEC-----SSSCCTTCCEEECCSS-CCCCC---GGGHHHHTTCSEEECCSS
T ss_pred CCCCHHHh--cCccCCCEEECCCCC-CCCCCc-----ccccCCCCcEEECCCC-CCCcc---CcccccCCCCCEEECCCC
Confidence 66556666 788999999999975 444442 2256899999999985 45566 444567899999999996
Q ss_pred CCCcccccHHHhhhcccCcEEEEcccc
Q 003192 753 NKLKSILSVSIARGLQQLQVIDVTECK 779 (840)
Q Consensus 753 ~~L~~l~~~~~~~~l~~L~~L~l~~c~ 779 (840)
.+..++ +..+++|+.|++++|+
T Consensus 335 -~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 335 -SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -CCCCCC----CCTTCCCSEEECCSSC
T ss_pred -CCCCcC----hhhcCCCCEEEeeCCC
Confidence 477774 3668999999999875
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=4e-23 Score=230.21 Aligned_cols=340 Identities=19% Similarity=0.131 Sum_probs=200.6
Q ss_pred ccccccEEeecccCC-CCCCCcC-CCCC-------------ceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC
Q 003192 438 TLKFCTAISLHKCDV-NELPEEL-ECPQ-------------LKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL 502 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~-~~l~~~~-~~~~-------------L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 502 (840)
.++++++|++++|.+ ..+|..+ ++.+ +++|++++|.+. .+|. -.++|++|++++|.++.+
T Consensus 32 ~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~l 106 (454)
T 1jl5_A 32 NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTEL 106 (454)
T ss_dssp --CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSC
T ss_pred cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCCcc
Confidence 345566666666655 2455544 4443 366777666653 3333 135777888888877777
Q ss_pred chhhhcccCCcEEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccc---cc
Q 003192 503 PSSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVER---LN 579 (840)
Q Consensus 503 p~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~---L~ 579 (840)
|.. +.+|++|++++|.++.++.+. ++|++|++++|.++.+| .++++++|++|++++| .++.+|..+.. |.
T Consensus 107 p~~---~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~~~L~~L~ 179 (454)
T 1jl5_A 107 PEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIA 179 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSCCCCCCTTCCEEE
T ss_pred ccc---cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-cCcccCCCcccccEEE
Confidence 753 367888888888877644332 68999999999999998 5899999999999985 56667764433 33
Q ss_pred ccccc-CChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCC--cCCCCCCccEEEEeecCcccchhhHH
Q 003192 580 IERSN-ASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWD--WHGKYETSRTLKLMLNTRTCLENGTI 656 (840)
Q Consensus 580 ~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~l~L~~~~~~~~~~~~~ 656 (840)
+..+. ..+.+++++++|+.|++++|.+..+|... .+|+.|++..+.... .....+.++.+++..+....++..
T Consensus 180 L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~-- 255 (454)
T 1jl5_A 180 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL-- 255 (454)
T ss_dssp CCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC--
T ss_pred CcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc--CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCccccc--
Confidence 33221 12335777888888888888887776543 577777776553221 234556677777776665554432
Q ss_pred HhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceecccccccccccccccc
Q 003192 657 MQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRL 736 (840)
Q Consensus 657 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~ 736 (840)
+++|+.|++++|.... ++. .+++|++|++++|. +..++ ...++|+.|+++++ .+..++
T Consensus 256 --~~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~ls~N~-l~~l~--------~~~~~L~~L~l~~N-~l~~i~---- 313 (454)
T 1jl5_A 256 --PPSLEALNVRDNYLTD-LPE-----LPQSLTFLDVSENI-FSGLS--------ELPPNLYYLNASSN-EIRSLC---- 313 (454)
T ss_dssp --CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSC-CSEES--------CCCTTCCEEECCSS-CCSEEC----
T ss_pred --ccccCEEECCCCcccc-cCc-----ccCcCCEEECcCCc-cCccc--------CcCCcCCEEECcCC-cCCccc----
Confidence 4678888887765332 332 24678888887764 32321 11256666666653 333331
Q ss_pred CcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccccccccccccc--c
Q 003192 737 TAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTA--E 814 (840)
Q Consensus 737 ~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~ 814 (840)
...++|+.|++++| +++.+|. .+++|++|++++| .++.+.. .+++|+.|++++|+..+ .
T Consensus 314 --~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~lp~----------~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 314 --DLPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE----------LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp --CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC----------CCTTCCEEECCSSCCSSCCC
T ss_pred --CCcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccccc----------hhhhccEEECCCCCCCcCCC
Confidence 01146777777763 4666543 1466777777665 4444321 13566677777766655 5
Q ss_pred cccCcccc-------------cccceeecCCCC
Q 003192 815 AATNEITF-------------SKLKSLSLSYLP 834 (840)
Q Consensus 815 ~~~~l~~l-------------~~L~~L~L~~cp 834 (840)
+|..+..+ ++|+.|++++++
T Consensus 375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCTTCCEEECCC---------------------
T ss_pred ChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 66666555 667777776653
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=2.9e-22 Score=213.75 Aligned_cols=231 Identities=20% Similarity=0.312 Sum_probs=182.7
Q ss_pred CCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCC-cccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecC
Q 003192 485 GMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGD-IAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLT 563 (840)
Q Consensus 485 ~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 563 (840)
....+++|++++|.+..+|..++++++|++|+|++|.++. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4577899999999999999999999999999999999887 456899999999999999999999999999999999999
Q ss_pred CCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEE
Q 003192 564 NCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKL 643 (840)
Q Consensus 564 ~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L 643 (840)
+|+.++.+|..+.... ....+.++++|+.|++++|.+..+|..+
T Consensus 159 ~n~~~~~~p~~~~~~~------~~~~~~~l~~L~~L~L~~n~l~~lp~~l------------------------------ 202 (328)
T 4fcg_A 159 ACPELTELPEPLASTD------ASGEHQGLVNLQSLRLEWTGIRSLPASI------------------------------ 202 (328)
T ss_dssp EETTCCCCCSCSEEEC-------CCCEEESTTCCEEEEEEECCCCCCGGG------------------------------
T ss_pred CCCCccccChhHhhcc------chhhhccCCCCCEEECcCCCcCcchHhh------------------------------
Confidence 9999999998665321 1233677899999999999888766542
Q ss_pred eecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccc
Q 003192 644 MLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLH 723 (840)
Q Consensus 644 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~ 723 (840)
..+++|+.|++++|... .++..+ ..+++|++|++++|.....++. ....+++|+.|+++
T Consensus 203 -------------~~l~~L~~L~L~~N~l~-~l~~~l--~~l~~L~~L~Ls~n~~~~~~p~-----~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 203 -------------ANLQNLKSLKIRNSPLS-ALGPAI--HHLPKLEELDLRGCTALRNYPP-----IFGGRAPLKRLILK 261 (328)
T ss_dssp -------------GGCTTCCEEEEESSCCC-CCCGGG--GGCTTCCEEECTTCTTCCBCCC-----CTTCCCCCCEEECT
T ss_pred -------------cCCCCCCEEEccCCCCC-cCchhh--ccCCCCCEEECcCCcchhhhHH-----HhcCCCCCCEEECC
Confidence 23566777777766544 344444 6788888888888876655543 23567888888888
Q ss_pred cccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcc
Q 003192 724 NLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTE 777 (840)
Q Consensus 724 ~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~ 777 (840)
+|+.+..+ +.....+++|+.|++++|+.+..+|. .+..+++|+.+++..
T Consensus 262 ~n~~~~~~---p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 262 DCSNLLTL---PLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCCBC---CTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred CCCchhhc---chhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence 88877777 45567889999999999888888875 678899999998875
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=2.1e-21 Score=227.99 Aligned_cols=120 Identities=21% Similarity=0.311 Sum_probs=102.5
Q ss_pred cccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCcccCCc-
Q 003192 448 HKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVLGDI- 525 (840)
Q Consensus 448 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~~- 525 (840)
++.++..+|..+. +++++|+|++|.+. .+++..|.++++|++|+|++|.++.+|+ +|.+|++|++|+|++|.++.+
T Consensus 39 ~~~~l~~vP~~lp-~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 39 MELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TTSCCSSCCSSSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCcCccCCCCC-cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 3346677887552 58999999999985 6666679999999999999999998865 799999999999999999884
Q ss_pred -ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCcc
Q 003192 526 -AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKS 570 (840)
Q Consensus 526 -~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~ 570 (840)
..|++|++|++|++++|+++.+|.. ++++++|++|++++| .+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~ 162 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQS 162 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCC
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-cccc
Confidence 4589999999999999999998764 899999999999995 4443
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=8.2e-22 Score=219.80 Aligned_cols=252 Identities=17% Similarity=0.134 Sum_probs=179.8
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCcccccCCCCCCEEec
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILSL 539 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L 539 (840)
++++|++|++++|.+.. +| .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 68999999999998864 55 3889999999999999999987 899999999999999999875 999999999999
Q ss_pred cCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeec-CccCCCccccccC
Q 003192 540 SSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQG-AKILPRGLFSKKL 618 (840)
Q Consensus 540 ~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L 618 (840)
++|.++.+| ++.+++|++|++++| .++.+| ++.+++|+.|+++.|. +..++ ...+++|
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~-----------------l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L 172 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARN-TLTEID-----------------VSHNTQLTELDCHLNKKITKLD-VTPQTQL 172 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC-----------------CTTCTTCCEEECTTCSCCCCCC-CTTCTTC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCC-ccceec-----------------cccCCcCCEEECCCCCcccccc-cccCCcC
Confidence 999999987 899999999999995 455443 5678899999999884 44442 2266788
Q ss_pred cEEEEEEcCcCCc-CCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCC
Q 003192 619 ERYKILIGDEWDW-HGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSP 697 (840)
Q Consensus 619 ~~L~l~~~~~~~~-~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 697 (840)
+.|++..+..... ....+.++.+.+..+.....+ +..+++|+.|++++|.... ++ + ..+++|+.|++++|.
T Consensus 173 ~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~-ip--~--~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 173 TTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE-ID--V--TPLTQLTYFDCSVNP 244 (457)
T ss_dssp CEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC-CC--C--TTCTTCSEEECCSSC
T ss_pred CEEECCCCccceeccccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccc-cC--c--cccCCCCEEEeeCCc
Confidence 8888765542111 344566777777766555542 4456777777777765433 33 2 567778888877764
Q ss_pred CcceeecCCCCccCCCCCccc----------eeccccccccccccccccCcccCCCCCEEEEecCCCCcccc
Q 003192 698 YILCIVDSVEGVACDAFPLLE----------SLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSIL 759 (840)
Q Consensus 698 ~l~~l~~~~~~~~~~~~~~L~----------~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 759 (840)
. ..+ ..+.|++|+ .|++++|..+..+ +.+.+++|+.|++++|+.+..+|
T Consensus 245 l-~~~-------~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 245 L-TEL-------DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF-----QAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp C-SCC-------CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE-----ECTTCTTCCCCCCTTCTTCCEEE
T ss_pred C-CCc-------CHHHCCCCCEEeccCCCCCEEECCCCccCCcc-----cccccccCCEEECCCCcccceec
Confidence 2 222 123344444 4444444433333 23456777777777776555543
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=9e-22 Score=210.93 Aligned_cols=294 Identities=14% Similarity=0.146 Sum_probs=142.2
Q ss_pred CceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCcEEEecCcccCC--cccccCCCCCCEEec
Q 003192 463 QLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLRTLCLDQSVLGD--IAVIGELKQLEILSL 539 (840)
Q Consensus 463 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L 539 (840)
+++.++++++.+ ..+|..+ .++|++|++++|.+..+| ..+.++++|++|++++|.++. +..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l-~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCC-SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCc-cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 344555544443 2344331 234555555555555442 245555555555555555544 234555555555555
Q ss_pred cCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCc
Q 003192 540 SSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLE 619 (840)
Q Consensus 540 ~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 619 (840)
++|.++.+|..+. ++|++|++++ +.+..+|.. .+.++++|+.|++++|.+...+..
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~--------------~~~~l~~L~~L~l~~n~l~~~~~~------- 165 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKG--------------VFSGLRNMNCIEMGGNPLENSGFE------- 165 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSG--------------GGSSCSSCCEEECCSCCCBGGGSC-------
T ss_pred CCCcCCccCcccc--ccCCEEECCC-CccCccCHh--------------HhCCCccCCEEECCCCccccCCCC-------
Confidence 5555555554333 4555555555 233344331 134455555555555544321100
Q ss_pred EEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCc
Q 003192 620 RYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYI 699 (840)
Q Consensus 620 ~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 699 (840)
...+..+ +|+.|++++|... .++..+ +++|++|++++|..
T Consensus 166 ---------------------------------~~~~~~l-~L~~L~l~~n~l~-~l~~~~----~~~L~~L~l~~n~i- 205 (332)
T 2ft3_A 166 ---------------------------------PGAFDGL-KLNYLRISEAKLT-GIPKDL----PETLNELHLDHNKI- 205 (332)
T ss_dssp ---------------------------------TTSSCSC-CCSCCBCCSSBCS-SCCSSS----CSSCSCCBCCSSCC-
T ss_pred ---------------------------------cccccCC-ccCEEECcCCCCC-ccCccc----cCCCCEEECCCCcC-
Confidence 0000011 3444444443321 122221 24555555555431
Q ss_pred ceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccc
Q 003192 700 LCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECK 779 (840)
Q Consensus 700 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 779 (840)
..++ ......+++|+.|+++++ .+..++ +.....+++|+.|++++| +++.+|. .+..+++|++|++++|
T Consensus 206 ~~~~----~~~l~~l~~L~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N- 274 (332)
T 2ft3_A 206 QAIE----LEDLLRYSKLYRLGLGHN-QIRMIE--NGSLSFLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTN- 274 (332)
T ss_dssp CCCC----TTSSTTCTTCSCCBCCSS-CCCCCC--TTGGGGCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSS-
T ss_pred CccC----HHHhcCCCCCCEEECCCC-cCCcCC--hhHhhCCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECCCC-
Confidence 1111 112234566666666653 344432 122345677777777774 5666655 3566777777777774
Q ss_pred cchhhccccccccccchhhcccccccccccccc--cccccCcccccccceeecCCCCC
Q 003192 780 SMEVILGTEEERISSNQEIELITPRGIQKCSLT--AEAATNEITFSKLKSLSLSYLPS 835 (840)
Q Consensus 780 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l--~~~~~~l~~l~~L~~L~L~~cp~ 835 (840)
.++.+................|+.+++.+|+.. ...|..+..+++|+.|+++++.+
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence 455554332221111112456777777777755 44566677899999999988753
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=6.8e-21 Score=203.96 Aligned_cols=156 Identities=19% Similarity=0.329 Sum_probs=127.1
Q ss_pred ccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEEEec
Q 003192 440 KFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLD 518 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~ 518 (840)
..++.++++++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 36788999999998888755 378999999999875 45555689999999999999999977 7799999999999999
Q ss_pred CcccCCc-ccccCCCCCCEEeccCCCCCCCcH-HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCC
Q 003192 519 QSVLGDI-AVIGELKQLEILSLSSSDIEHLPR-EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRL 596 (840)
Q Consensus 519 ~~~l~~~-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L 596 (840)
+|.++.+ ..+. ++|++|++++|.++.++. .+.++++|++|++++|. +...+ .....+.++++|
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~------------~~~~~~~~l~~L 173 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSG------------IENGAFQGMKKL 173 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGG------------BCTTGGGGCTTC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccC------------cChhhccCCCCc
Confidence 9998874 3343 799999999999998765 47899999999999854 33211 112347789999
Q ss_pred CeEEEEeecCccCCCc
Q 003192 597 TTLEIHIQGAKILPRG 612 (840)
Q Consensus 597 ~~L~l~~~~~~~~~~~ 612 (840)
+.|+++.|.+..+|..
T Consensus 174 ~~L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 174 SYIRIADTNITTIPQG 189 (330)
T ss_dssp CEEECCSSCCCSCCSS
T ss_pred CEEECCCCccccCCcc
Confidence 9999999998887755
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=5.8e-21 Score=212.74 Aligned_cols=326 Identities=17% Similarity=0.093 Sum_probs=186.1
Q ss_pred cccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEec
Q 003192 439 LKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLD 518 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 518 (840)
+++++.|++++|.+..+|.. +++|++|++++|.+. .++. ..++|++|++++|.++.+| .++++++|++|+++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECC
Confidence 46788999999888877764 478899999888774 3332 1268999999999988888 58889999999999
Q ss_pred CcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCe
Q 003192 519 QSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 519 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
+|.++.++.. ..+|++|++++|.++.+| .++++++|++|++++| .+..+|... ++|+.
T Consensus 162 ~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~------------------~~L~~ 219 (454)
T 1jl5_A 162 NNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDLP------------------LSLES 219 (454)
T ss_dssp SSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC------------------TTCCE
T ss_pred CCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCCc------------------CcccE
Confidence 9988775432 358899999999888888 5888999999999885 455555421 24555
Q ss_pred EEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcc
Q 003192 599 LEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLN 678 (840)
Q Consensus 599 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 678 (840)
|++++|.+..+|....+++|+.|++..+...........++.+++..+....++.. +++|+.|++++|.... ++.
T Consensus 220 L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~-l~~ 294 (454)
T 1jl5_A 220 IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSG-LSE 294 (454)
T ss_dssp EECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSE-ESC
T ss_pred EECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc----cCcCCEEECcCCccCc-ccC
Confidence 55555555544432244455555554332222112234555566665555444432 3678888888765322 221
Q ss_pred cccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCccc
Q 003192 679 ELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSI 758 (840)
Q Consensus 679 ~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l 758 (840)
..++|+.|++++|. +..++ ...++|+.|++++ +.+..++ . .+++|+.|++++| +++.+
T Consensus 295 -----~~~~L~~L~l~~N~-l~~i~--------~~~~~L~~L~Ls~-N~l~~lp---~---~~~~L~~L~L~~N-~l~~l 352 (454)
T 1jl5_A 295 -----LPPNLYYLNASSNE-IRSLC--------DLPPSLEELNVSN-NKLIELP---A---LPPRLERLIASFN-HLAEV 352 (454)
T ss_dssp -----CCTTCCEEECCSSC-CSEEC--------CCCTTCCEEECCS-SCCSCCC---C---CCTTCCEEECCSS-CCSCC
T ss_pred -----cCCcCCEEECcCCc-CCccc--------CCcCcCCEEECCC-Ccccccc---c---cCCcCCEEECCCC-ccccc
Confidence 12678888888764 22221 1125788888887 3455552 1 2578888888885 57777
Q ss_pred ccHHHhhhcccCcEEEEcccccchhhc--cccccccc------cc-hhhccccccccccccccc--ccccCcccccccce
Q 003192 759 LSVSIARGLQQLQVIDVTECKSMEVIL--GTEEERIS------SN-QEIELITPRGIQKCSLTA--EAATNEITFSKLKS 827 (840)
Q Consensus 759 ~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~------~~-~~l~~L~~L~l~~c~~l~--~~~~~l~~l~~L~~ 827 (840)
|. .+++|++|++++| .+..+. +....... .. ..+++|+.|++++|+..+ .+|. +|+.
T Consensus 353 p~-----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~ 420 (454)
T 1jl5_A 353 PE-----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVED 420 (454)
T ss_dssp CC-----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC----------------------------------------
T ss_pred cc-----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhh
Confidence 54 3678888888875 444421 11111000 00 012678899999988765 5553 4555
Q ss_pred eecCCC
Q 003192 828 LSLSYL 833 (840)
Q Consensus 828 L~L~~c 833 (840)
|.+.+|
T Consensus 421 L~~~~~ 426 (454)
T 1jl5_A 421 LRMNSE 426 (454)
T ss_dssp ------
T ss_pred eeCcCc
Confidence 566554
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.8e-21 Score=208.53 Aligned_cols=289 Identities=17% Similarity=0.236 Sum_probs=182.0
Q ss_pred ccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEEEec
Q 003192 440 KFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLD 518 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~ 518 (840)
..++.++++++.+..+|..+ .++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 35789999999999998765 479999999999875 45555589999999999999999976 7789999999999999
Q ss_pred CcccCCc-ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCC
Q 003192 519 QSVLGDI-AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRL 596 (840)
Q Consensus 519 ~~~l~~~-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L 596 (840)
+|.++.+ ..+. ++|++|++++|.++.+|.. +.++++|++|++++|. ++..+. ....+..+ +|
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~~~l-~L 174 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGF------------EPGAFDGL-KL 174 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGS------------CTTSSCSC-CC
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCC------------CcccccCC-cc
Confidence 9999884 3444 8999999999999988764 7899999999999954 432111 11234555 89
Q ss_pred CeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhh
Q 003192 597 TTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNV 676 (840)
Q Consensus 597 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 676 (840)
+.|+++.|.+..+|..+. .+|+.|++ ..+.....+...+..+++|+.|++++|......
T Consensus 175 ~~L~l~~n~l~~l~~~~~-~~L~~L~l--------------------~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLP-ETLNELHL--------------------DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp SCCBCCSSBCSSCCSSSC-SSCSCCBC--------------------CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CEEECcCCCCCccCcccc-CCCCEEEC--------------------CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 999999999888876532 33443333 222222333233334556666666655433322
Q ss_pred cccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCc----ccCCCCCEEEEecC
Q 003192 677 LNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTA----ASFCNLGIIKVGNC 752 (840)
Q Consensus 677 ~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~----~~l~~L~~L~l~~C 752 (840)
+..+ ..+++|+.|++++|. +..++. ....+++|+.|++++ +.++.++...+.. ..+++|+.|+++++
T Consensus 234 ~~~~--~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 234 NGSL--SFLPTLRELHLDNNK-LSRVPA-----GLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp TTGG--GGCTTCCEEECCSSC-CCBCCT-----TGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred hhHh--hCCCCCCEEECCCCc-CeecCh-----hhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecC
Confidence 2233 455666666666543 222221 123455555555555 2344442211111 11344555555554
Q ss_pred CCCc--ccccHHHhhhcccCcEEEEccc
Q 003192 753 NKLK--SILSVSIARGLQQLQVIDVTEC 778 (840)
Q Consensus 753 ~~L~--~l~~~~~~~~l~~L~~L~l~~c 778 (840)
+ +. .+++ ..+..+++|+.|++++|
T Consensus 305 ~-~~~~~~~~-~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 305 P-VPYWEVQP-ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp S-SCGGGSCG-GGGTTBCCSTTEEC---
T ss_pred c-ccccccCc-ccccccchhhhhhcccc
Confidence 3 22 2222 23444555555555544
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.3e-20 Score=201.84 Aligned_cols=293 Identities=16% Similarity=0.167 Sum_probs=197.0
Q ss_pred CceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCcccCC--cccccCCCCCCEEec
Q 003192 463 QLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVLGD--IAVIGELKQLEILSL 539 (840)
Q Consensus 463 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L 539 (840)
+++.++++++.+. .+|..+ .+.|++|++++|.++.+|. .+.++++|++|++++|.++. +..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 6788888877763 566542 3678899999999988765 78899999999999999877 456889999999999
Q ss_pred cCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCc
Q 003192 540 SSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLE 619 (840)
Q Consensus 540 ~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 619 (840)
++|.++.+|..+. ++|++|++++| .+..++. ..+.++++|+.|+++.|.+...+.
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~~-------- 162 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHEN-EITKVRK--------------SVFNGLNQMIVVELGTNPLKSSGI-------- 162 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCH--------------HHHTTCTTCCEEECCSSCCCGGGB--------
T ss_pred CCCcCCccChhhc--ccccEEECCCC-cccccCH--------------hHhcCCccccEEECCCCcCCccCc--------
Confidence 9999998887654 78999999884 4555554 336788899999998877653111
Q ss_pred EEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCc
Q 003192 620 RYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYI 699 (840)
Q Consensus 620 ~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 699 (840)
....+..+++|+.|+++++... .++..+ +++|++|++++|. +
T Consensus 163 --------------------------------~~~~~~~l~~L~~L~l~~n~l~-~l~~~~----~~~L~~L~l~~n~-l 204 (330)
T 1xku_A 163 --------------------------------ENGAFQGMKKLSYIRIADTNIT-TIPQGL----PPSLTELHLDGNK-I 204 (330)
T ss_dssp --------------------------------CTTGGGGCTTCCEEECCSSCCC-SCCSSC----CTTCSEEECTTSC-C
T ss_pred --------------------------------ChhhccCCCCcCEEECCCCccc-cCCccc----cccCCEEECCCCc-C
Confidence 1112233567777777665432 233322 3678888887765 3
Q ss_pred ceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccc
Q 003192 700 LCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECK 779 (840)
Q Consensus 700 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 779 (840)
..+. ......+++|+.|+++++ .+..+. +.....+++|++|++++| +++.+|. .+..+++|++|++++|
T Consensus 205 ~~~~----~~~~~~l~~L~~L~Ls~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N- 273 (330)
T 1xku_A 205 TKVD----AASLKGLNNLAKLGLSFN-SISAVD--NGSLANTPHLRELHLNNN-KLVKVPG--GLADHKYIQVVYLHNN- 273 (330)
T ss_dssp CEEC----TGGGTTCTTCCEEECCSS-CCCEEC--TTTGGGSTTCCEEECCSS-CCSSCCT--TTTTCSSCCEEECCSS-
T ss_pred CccC----HHHhcCCCCCCEEECCCC-cCceeC--hhhccCCCCCCEEECCCC-cCccCCh--hhccCCCcCEEECCCC-
Confidence 2221 112345777888888774 344442 223456788888888885 5777765 4677888888888875
Q ss_pred cchhhccccccccccchhhccccccccccccccc--ccccCcccccccceeecCCC
Q 003192 780 SMEVILGTEEERISSNQEIELITPRGIQKCSLTA--EAATNEITFSKLKSLSLSYL 833 (840)
Q Consensus 780 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~l~~l~~L~~L~L~~c 833 (840)
.++.+................|..+++.+|+... ..|..+..+++|+.++|+++
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 5666544433222122234677788888887542 44566777889999998875
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=6.1e-21 Score=203.44 Aligned_cols=148 Identities=24% Similarity=0.366 Sum_probs=99.8
Q ss_pred ccccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEec
Q 003192 440 KFCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLD 518 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 518 (840)
..++.|+++++.+..+|..+ .+++|++|++++|.+. .+|.. ++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 46778888888887777765 6777777777777775 66654 677777777777777777777777777777777777
Q ss_pred CcccCC--ccccc---------CCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCCh
Q 003192 519 QSVLGD--IAVIG---------ELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASL 587 (840)
Q Consensus 519 ~~~l~~--~~~i~---------~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~ 587 (840)
+|.+.. |..++ ++++|++|++++|.++.+|..++++++|++|++++| .+..+|+.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~------------- 224 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA------------- 224 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-------------
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-------------
Confidence 766433 33333 377777777777777777766777777777777663 34444432
Q ss_pred hhhhcCCCCCeEEEEeec
Q 003192 588 DELKHLSRLTTLEIHIQG 605 (840)
Q Consensus 588 ~~l~~l~~L~~L~l~~~~ 605 (840)
+..+++|+.|++++|.
T Consensus 225 --l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 225 --IHHLPKLEELDLRGCT 240 (328)
T ss_dssp --GGGCTTCCEEECTTCT
T ss_pred --hccCCCCCEEECcCCc
Confidence 3455556666655443
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=7.7e-20 Score=209.80 Aligned_cols=255 Identities=18% Similarity=0.151 Sum_probs=182.4
Q ss_pred cccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCc
Q 003192 441 FCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 441 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~ 520 (840)
+++.|+++++.+..+|..+. ++|++|++++|.+. .+|. .+++|++|+|++|.++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 47899999999999988665 89999999999875 5665 57899999999999999987 7799999999999
Q ss_pred ccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEE
Q 003192 521 VLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLE 600 (840)
Q Consensus 521 ~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~ 600 (840)
.++.++. .+++|++|++++|+++.+|.. +++|++|++++| .+..+|. .+++|+.|+
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~------------------~~~~L~~L~ 167 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA------------------LPSELCKLW 167 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC------------------CCTTCCEEE
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC------------------ccCCCCEEE
Confidence 9988655 788999999999999999863 589999999985 5666664 235788999
Q ss_pred EEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccc
Q 003192 601 IHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNEL 680 (840)
Q Consensus 601 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 680 (840)
+++|.+..+|. .+++|+.|++. .|....++. .+++|+.|++++|... .++
T Consensus 168 L~~N~l~~l~~--~~~~L~~L~Ls--------------------~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~--- 217 (622)
T 3g06_A 168 AYNNQLTSLPM--LPSGLQELSVS--------------------DNQLASLPT----LPSELYKLWAYNNRLT-SLP--- 217 (622)
T ss_dssp CCSSCCSCCCC--CCTTCCEEECC--------------------SSCCSCCCC----CCTTCCEEECCSSCCS-SCC---
T ss_pred CCCCCCCCCcc--cCCCCcEEECC--------------------CCCCCCCCC----ccchhhEEECcCCccc-ccC---
Confidence 99888887772 23445554443 222222222 1356777777765432 222
Q ss_pred cccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCccccc
Q 003192 681 DAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILS 760 (840)
Q Consensus 681 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 760 (840)
..+++|+.|++++|. +..++ ..+++|+.|+++++ .++.++ . .+++|+.|++++| +++.+|+
T Consensus 218 --~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~N-~L~~lp---~---~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 218 --ALPSGLKELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLTSLP---M---LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp --CCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCSCCC---C---CCTTCCEEECCSS-CCCSCCG
T ss_pred --CCCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECCCC-CCCcCC---c---ccccCcEEeCCCC-CCCcCCH
Confidence 224677777777763 33222 34577777777774 555552 1 4577777777774 5776654
Q ss_pred HHHhhhcccCcEEEEcccc
Q 003192 761 VSIARGLQQLQVIDVTECK 779 (840)
Q Consensus 761 ~~~~~~l~~L~~L~l~~c~ 779 (840)
.+.++++|+.|++++|+
T Consensus 279 --~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 279 --SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --GGGGSCTTCEEECCSCC
T ss_pred --HHhhccccCEEEecCCC
Confidence 35677777777777754
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=7.2e-21 Score=201.64 Aligned_cols=152 Identities=20% Similarity=0.328 Sum_probs=104.5
Q ss_pred ccccEEeecccCCC---CCCCcC-CCCCceEEEecC-CCCCCCCChhhhcCCCceeEEEecCCcCC-CCchhhhcccCCc
Q 003192 440 KFCTAISLHKCDVN---ELPEEL-ECPQLKFFYMYP-KDPALKIPDKFFAGMIELRVLDLTKMHLL-SLPSSLHLLVNLR 513 (840)
Q Consensus 440 ~~~~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~ 513 (840)
.++++|+++++.+. .+|..+ ++++|++|++++ |.+...+|.. |.++++|++|++++|.+. .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 46777777777775 466555 777777777774 6666666655 677777777777777776 6677777777777
Q ss_pred EEEecCcccCC--cccccCCCCCCEEeccCCCCC-CCcHHHhccC-CCCEEecCCCCCCccccccccccccccccCChhh
Q 003192 514 TLCLDQSVLGD--IAVIGELKQLEILSLSSSDIE-HLPREIGRLS-KLRLLDLTNCSKLKSIPPNVERLNIERSNASLDE 589 (840)
Q Consensus 514 ~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~ 589 (840)
+|++++|.++. +..++++++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~--------------- 193 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--------------- 193 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG---------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH---------------
Confidence 77777777663 456777777777777777777 6777777776 7777777775433344443
Q ss_pred hhcCCCCCeEEEEeecCcc
Q 003192 590 LKHLSRLTTLEIHIQGAKI 608 (840)
Q Consensus 590 l~~l~~L~~L~l~~~~~~~ 608 (840)
+..++ |+.|++++|.+..
T Consensus 194 ~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp GGGCC-CSEEECCSSEEEE
T ss_pred HhCCc-ccEEECcCCcccC
Confidence 33444 7777777766653
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=5.8e-21 Score=202.40 Aligned_cols=250 Identities=14% Similarity=0.150 Sum_probs=168.3
Q ss_pred CCceEEEecCCCCCC--CCChhhhcCCCceeEEEecC-CcCC-CCchhhhcccCCcEEEecCcccCC--cccccCCCCCC
Q 003192 462 PQLKFFYMYPKDPAL--KIPDKFFAGMIELRVLDLTK-MHLL-SLPSSLHLLVNLRTLCLDQSVLGD--IAVIGELKQLE 535 (840)
Q Consensus 462 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~ 535 (840)
.+++.|++++|.+.+ .+|.. |.++++|++|++++ |.+. .+|..++++++|++|++++|.++. |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578999999998877 67765 78899999999995 7776 678889999999999999999874 56789999999
Q ss_pred EEeccCCCCC-CCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCC-CCCeEEEEeecCc-cCCCc
Q 003192 536 ILSLSSSDIE-HLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLS-RLTTLEIHIQGAK-ILPRG 612 (840)
Q Consensus 536 ~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~~~~~ 612 (840)
+|++++|.++ .+|..++.+++|++|++++|...+.+|.. +..++ +|+.|+++.|.+. .+|..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---------------l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS---------------YGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG---------------GGCCCTTCCEEECCSSEEEEECCGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH---------------HhhhhhcCcEEECcCCeeeccCChH
Confidence 9999999888 78888999999999999986543366653 45565 7888888877654 22221
Q ss_pred cccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEE
Q 003192 613 LFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLH 692 (840)
Q Consensus 613 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~ 692 (840)
+..++ |+.|++++|......+..+ ..+++|+.|+
T Consensus 194 -------------------------------------------~~~l~-L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~ 227 (313)
T 1ogq_A 194 -------------------------------------------FANLN-LAFVDLSRNMLEGDASVLF--GSDKNTQKIH 227 (313)
T ss_dssp -------------------------------------------GGGCC-CSEEECCSSEEEECCGGGC--CTTSCCSEEE
T ss_pred -------------------------------------------HhCCc-ccEEECcCCcccCcCCHHH--hcCCCCCEEE
Confidence 11122 6666666654443333333 4455666666
Q ss_pred eecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcE
Q 003192 693 VQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQV 772 (840)
Q Consensus 693 l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~ 772 (840)
+++|. +... ......+++|++|++++| +++...| ..+..+++|++
T Consensus 228 L~~N~------------------------------l~~~---~~~~~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~ 272 (313)
T 1ogq_A 228 LAKNS------------------------------LAFD---LGKVGLSKNLNGLDLRNN-RIYGTLP-QGLTQLKFLHS 272 (313)
T ss_dssp CCSSE------------------------------ECCB---GGGCCCCTTCCEEECCSS-CCEECCC-GGGGGCTTCCE
T ss_pred CCCCc------------------------------eeee---cCcccccCCCCEEECcCC-cccCcCC-hHHhcCcCCCE
Confidence 65543 1111 111234577777777774 4553333 24567777888
Q ss_pred EEEcccccchhhccccccccccchhhcccccccccccccccccc
Q 003192 773 IDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAA 816 (840)
Q Consensus 773 L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 816 (840)
|++++| .+...++. ...+++|+.+++.+|+.+...|
T Consensus 273 L~Ls~N-~l~~~ip~-------~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 273 LNVSFN-NLCGEIPQ-------GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EECCSS-EEEEECCC-------STTGGGSCGGGTCSSSEEESTT
T ss_pred EECcCC-cccccCCC-------CccccccChHHhcCCCCccCCC
Confidence 888775 34332221 1356777778888877654433
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=200.20 Aligned_cols=268 Identities=19% Similarity=0.200 Sum_probs=174.0
Q ss_pred EEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEEEecCccc
Q 003192 444 AISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLDQSVL 522 (840)
Q Consensus 444 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l 522 (840)
..+.+++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..+.++++|++|++++|.+
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 46777788888887542 58899999888875 45555588899999999999988876 45788889999999999988
Q ss_pred CCc-cc-ccCCCCCCEEeccCCCCCCCcH--HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCe
Q 003192 523 GDI-AV-IGELKQLEILSLSSSDIEHLPR--EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 523 ~~~-~~-i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
+.+ +. ++++++|++|++++|.++.+|. .+.++++|++|++++|+.++.+++ ..+.++++|++
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------------~~~~~l~~L~~ 178 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--------------KDFAGLTFLEE 178 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--------------TTTTTCCEEEE
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--------------HHccCCCCCCE
Confidence 874 33 7888999999999998888876 678889999999988766666654 23567888888
Q ss_pred EEEEeecCccCCCc-c-ccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhh
Q 003192 599 LEIHIQGAKILPRG-L-FSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNV 676 (840)
Q Consensus 599 L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 676 (840)
|++++|.+..++.. + .+++| +.|++..+.....+......+++|+.|++++|......
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L--------------------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNV--------------------SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEE--------------------EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred EECCCCCcCccCHHHHhccccC--------------------CeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence 88888887655322 1 22222 23333333333444444444555566655554322211
Q ss_pred cccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceecccccc----ccccccccccCcccCCCCCEEEEecC
Q 003192 677 LNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLT----NLEKICNGRLTAASFCNLGIIKVGNC 752 (840)
Q Consensus 677 ~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~----~l~~i~~~~~~~~~l~~L~~L~l~~C 752 (840)
+..+. .....+.++.+++.++. .+..+ +.....+++|+.|++++|
T Consensus 239 ~~~l~----------------------------~~~~~~~l~~l~L~~~~l~~~~l~~l---~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 239 FSELS----------------------------TGETNSLIKKFTFRNVKITDESLFQV---MKLLNQISGLLELEFSRN 287 (353)
T ss_dssp CC----------------------------------CCCCCCEEEEESCBCCHHHHHHH---HHHHHTCTTCCEEECCSS
T ss_pred ccccc----------------------------cccccchhhccccccccccCcchhhh---HHHHhcccCCCEEECCCC
Confidence 11110 00112333334333321 12222 223356788888888885
Q ss_pred CCCcccccHHHhhhcccCcEEEEccccc
Q 003192 753 NKLKSILSVSIARGLQQLQVIDVTECKS 780 (840)
Q Consensus 753 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 780 (840)
+++.+|+ ..+..+++|++|++++|+-
T Consensus 288 -~l~~i~~-~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 288 -QLKSVPD-GIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp -CCCCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred -CCCccCH-HHHhcCCCCCEEEeeCCCc
Confidence 5777765 3347788888888888753
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=3.3e-19 Score=199.53 Aligned_cols=241 Identities=21% Similarity=0.281 Sum_probs=169.8
Q ss_pred ccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCcEEEecCc
Q 003192 442 CTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 442 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~ 520 (840)
.+.++.++..+..+|..+. +++++|++++|.+.. ++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567777778888887553 689999999998864 44445899999999999999998765 68899999999999999
Q ss_pred ccCCc--ccccCCCCCCEEeccCCCCCCCcH-HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCC
Q 003192 521 VLGDI--AVIGELKQLEILSLSSSDIEHLPR-EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT 597 (840)
Q Consensus 521 ~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~ 597 (840)
.++.+ ..++.+++|++|+|++|.++.+|. .+.++++|++|++++|+.++.+|.. .+.++++|+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~--------------~~~~l~~L~ 199 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG--------------AFEGLFNLK 199 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT--------------TTTTCTTCC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh--------------hccCCCCCC
Confidence 98874 348899999999999999998875 5789999999999999888888763 367889999
Q ss_pred eEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhc
Q 003192 598 TLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVL 677 (840)
Q Consensus 598 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 677 (840)
.|++++|.+..+|....+.+|+.|++ +.|.....++..+..+++|+.|++++|......+
T Consensus 200 ~L~L~~n~l~~~~~~~~l~~L~~L~L--------------------s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 200 YLNLGMCNIKDMPNLTPLVGLEELEM--------------------SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp EEECTTSCCSSCCCCTTCTTCCEEEC--------------------TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred EEECCCCcccccccccccccccEEEC--------------------cCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 99999999888775434444444433 3333333444444455666666666654433333
Q ss_pred ccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccc
Q 003192 678 NELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNL 725 (840)
Q Consensus 678 ~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 725 (840)
..+ .++++|+.|+|++|. +..++.. ....+++|+.|+++++
T Consensus 260 ~~~--~~l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 260 NAF--DGLASLVELNLAHNN-LSSLPHD----LFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTT--TTCTTCCEEECCSSC-CSCCCTT----SSTTCTTCCEEECCSS
T ss_pred HHh--cCCCCCCEEECCCCc-CCccChH----HhccccCCCEEEccCC
Confidence 333 455666666666653 2222211 2234556666666553
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=3.6e-20 Score=196.88 Aligned_cols=273 Identities=18% Similarity=0.089 Sum_probs=144.8
Q ss_pred hhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCcEEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCC
Q 003192 480 DKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLR 558 (840)
Q Consensus 480 ~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 558 (840)
...+..+++|++|++++|.+..++ ..+..+++|++|+|++|.++.+..++.+++|++|++++|.++.+| ..++|+
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 344556667777777777777654 467777777777777777766444777777777777777776655 236777
Q ss_pred EEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCc
Q 003192 559 LLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETS 638 (840)
Q Consensus 559 ~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 638 (840)
+|++++| .+..+|. ..+++|+.|++++|.+..++...
T Consensus 103 ~L~l~~n-~l~~~~~-----------------~~~~~L~~L~l~~N~l~~~~~~~------------------------- 139 (317)
T 3o53_A 103 TLHAANN-NISRVSC-----------------SRGQGKKNIYLANNKITMLRDLD------------------------- 139 (317)
T ss_dssp EEECCSS-CCSEEEE-----------------CCCSSCEEEECCSSCCCSGGGBC-------------------------
T ss_pred EEECCCC-ccCCcCc-----------------cccCCCCEEECCCCCCCCccchh-------------------------
Confidence 7777773 4444442 12456777777766665544321
Q ss_pred cEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccc
Q 003192 639 RTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLE 718 (840)
Q Consensus 639 ~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~ 718 (840)
+..+++|+.|++++|......+..+ ...+++|++|++++|. +..++. ...+++|+
T Consensus 140 -----------------~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~------~~~l~~L~ 194 (317)
T 3o53_A 140 -----------------EGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNF-IYDVKG------QVVFAKLK 194 (317)
T ss_dssp -----------------TGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSC-CCEEEC------CCCCTTCC
T ss_pred -----------------hhccCCCCEEECCCCCCCcccHHHH-hhccCcCCEEECCCCc-Cccccc------ccccccCC
Confidence 1224455555555543332222221 1235566666666543 222221 12355666
Q ss_pred eeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhh
Q 003192 719 SLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEI 798 (840)
Q Consensus 719 ~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l 798 (840)
.|+++++ .++.+ +.....+++|+.|++++| .++.+|. .+..+++|+.|++++|+-.....+ ..+..+
T Consensus 195 ~L~Ls~N-~l~~l---~~~~~~l~~L~~L~L~~N-~l~~l~~--~~~~l~~L~~L~l~~N~~~~~~~~------~~~~~~ 261 (317)
T 3o53_A 195 TLDLSSN-KLAFM---GPEFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLR------DFFSKN 261 (317)
T ss_dssp EEECCSS-CCCEE---CGGGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTCCCBHHHHH------HHHHTC
T ss_pred EEECCCC-cCCcc---hhhhcccCcccEEECcCC-cccchhh--HhhcCCCCCEEEccCCCccCcCHH------HHHhcc
Confidence 6666653 34444 222445666666666664 4665544 345566666666666543312111 112344
Q ss_pred cccccccccccccccccccCcccccccceeecCCCCCcc
Q 003192 799 ELITPRGIQKCSLTAEAATNEITFSKLKSLSLSYLPSLT 837 (840)
Q Consensus 799 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~cp~L~ 837 (840)
+.|+.+++.+|+.+...+......+.+....-..|+.|.
T Consensus 262 ~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred ccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 555555555555444333322233333333334455443
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=193.44 Aligned_cols=275 Identities=16% Similarity=0.205 Sum_probs=175.6
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCcccCCc--ccccCCCCCCE
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEI 536 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~ 536 (840)
.|+.....+++++.+ ..+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|.++.+ ..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~l-~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSL-NSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTC-SSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCc-ccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 455556677777766 4677653 3589999999999998876 899999999999999999873 56999999999
Q ss_pred EeccCCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeec-CccCCCcc-
Q 003192 537 LSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQG-AKILPRGL- 613 (840)
Q Consensus 537 L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~- 613 (840)
|++++|.++.+|.. ++++++|++|++++| .+..+|.. ..+.++++|+.|++++|. +..++...
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~-------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGET-------------SLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSS-------------CSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCch-------------hhhccCCCCcEEECCCCccccccCHHHc
Confidence 99999999999877 889999999999995 56677650 125788999999999884 55554321
Q ss_pred -ccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEE
Q 003192 614 -FSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLH 692 (840)
Q Consensus 614 -~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~ 692 (840)
.+++|+.|++ ..+......+..+..+++|+.|++++|.. +.++..+ ...+++|+.|+
T Consensus 171 ~~l~~L~~L~l--------------------~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~-~~~~~~L~~L~ 228 (353)
T 2z80_A 171 AGLTFLEELEI--------------------DASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIF-VDVTSSVECLE 228 (353)
T ss_dssp TTCCEEEEEEE--------------------EETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHH-HHHTTTEEEEE
T ss_pred cCCCCCCEEEC--------------------CCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhh-hhhcccccEEE
Confidence 2233333333 22222222222233345555555555442 2222211 12345555555
Q ss_pred eecCCCcceeecCCCCccCCCCCccceeccccccccccccccc-cCcccCCCCCEEEEecCCCCcc-----cccHHHhhh
Q 003192 693 VQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGR-LTAASFCNLGIIKVGNCNKLKS-----ILSVSIARG 766 (840)
Q Consensus 693 l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~~~~l~~L~~L~l~~C~~L~~-----l~~~~~~~~ 766 (840)
+++|. +..+.... ......+.++.++++++ .+.+ +|. .+..
T Consensus 229 L~~n~------------------------------l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~--~l~~ 275 (353)
T 2z80_A 229 LRDTD------------------------------LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMK--LLNQ 275 (353)
T ss_dssp EESCB------------------------------CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHH--HHHT
T ss_pred CCCCc------------------------------cccccccccccccccchhhccccccc-cccCcchhhhHH--HHhc
Confidence 55542 22211000 01123567788888875 3443 322 4677
Q ss_pred cccCcEEEEcccccchhhccccccccccchhhcccccccccccccccc
Q 003192 767 LQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAE 814 (840)
Q Consensus 767 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 814 (840)
+++|++|++++| .++.+.... +..+++|+.|++++|+....
T Consensus 276 l~~L~~L~Ls~N-~l~~i~~~~------~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 276 ISGLLELEFSRN-QLKSVPDGI------FDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT------TTTCTTCCEEECCSSCBCCC
T ss_pred ccCCCEEECCCC-CCCccCHHH------HhcCCCCCEEEeeCCCccCc
Confidence 899999999886 565543221 13566777777777766543
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3.6e-19 Score=188.35 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=110.1
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC---chhhhcccCCcEEEecC
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL---PSSLHLLVNLRTLCLDQ 519 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~L~~L~~L~L~~ 519 (840)
+.++.+++.+..+|..+ .++|++|++++|.+. .+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 36777777788887654 268888888888774 67777788888888888888888754 56777888888888888
Q ss_pred cccCC-cccccCCCCCCEEeccCCCCCCCcH--HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCC
Q 003192 520 SVLGD-IAVIGELKQLEILSLSSSDIEHLPR--EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRL 596 (840)
Q Consensus 520 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L 596 (840)
|.+.. +..+..+++|++|++++|.++.+|. .+..+++|++|++++|. +...++ ..+.++++|
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------------~~~~~l~~L 152 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN--------------GIFNGLSSL 152 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECST--------------TTTTTCTTC
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccch--------------hhcccCcCC
Confidence 88777 4558888888888888888887764 57788888888888853 333322 124567777
Q ss_pred CeEEEEeecCc
Q 003192 597 TTLEIHIQGAK 607 (840)
Q Consensus 597 ~~L~l~~~~~~ 607 (840)
++|++++|.+.
T Consensus 153 ~~L~l~~n~l~ 163 (306)
T 2z66_A 153 EVLKMAGNSFQ 163 (306)
T ss_dssp CEEECTTCEEG
T ss_pred CEEECCCCccc
Confidence 77777766554
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=9.5e-21 Score=220.40 Aligned_cols=218 Identities=11% Similarity=0.069 Sum_probs=114.1
Q ss_pred cccccEEeecccCCCCC-CCcC-C-CCC-ceEEEecCCCCCC-CCChhhhcCCCceeEEEecCCcCCC-----Cchhhhc
Q 003192 439 LKFCTAISLHKCDVNEL-PEEL-E-CPQ-LKFFYMYPKDPAL-KIPDKFFAGMIELRVLDLTKMHLLS-----LPSSLHL 508 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l-~~~~-~-~~~-L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~ 508 (840)
.++++.|+++++.+... +..+ . +++ |++|++.+|.... .-...+..++++|++|+|++|.+.. ++..+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 35677777777755321 1111 2 334 7777777665211 0111223467788888888776642 3344566
Q ss_pred ccCCcEEEecCcccCC-----c-ccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCcccccccccccccc
Q 003192 509 LVNLRTLCLDQSVLGD-----I-AVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIER 582 (840)
Q Consensus 509 L~~L~~L~L~~~~l~~-----~-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~ 582 (840)
+++|++|++++|.++. + ..+.++++|++|++++|.+..+|..+.++++|++|+++.+......+.
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--------- 261 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE--------- 261 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTT---------
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHH---------
Confidence 7778888888777752 1 234567788888888877777777777788888887765322211110
Q ss_pred ccCChhhhhcCCCCCeEEEEeecCccCCCcc-ccccCcEEEEEEcCcC-----CcCCCCCCccEEEEeecCcccchhhHH
Q 003192 583 SNASLDELKHLSRLTTLEIHIQGAKILPRGL-FSKKLERYKILIGDEW-----DWHGKYETSRTLKLMLNTRTCLENGTI 656 (840)
Q Consensus 583 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~l~~l~L~~~~~~~~~~~~~ 656 (840)
....+..+++|+.|+++.+....+|... .+++|+.|++..+... ......+.++.|.+..+..........
T Consensus 262 ---~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~ 338 (592)
T 3ogk_B 262 ---KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338 (592)
T ss_dssp ---SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred ---HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence 1122344455555555444333333333 3445555555433310 012344455555555211111122223
Q ss_pred Hhhcccceeeec
Q 003192 657 MQLKGIEDLYLG 668 (840)
Q Consensus 657 ~~l~~L~~L~l~ 668 (840)
..+++|+.|++.
T Consensus 339 ~~~~~L~~L~L~ 350 (592)
T 3ogk_B 339 QYCKQLKRLRIE 350 (592)
T ss_dssp HHCTTCCEEEEE
T ss_pred HhCCCCCEEEee
Confidence 335556666665
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=197.20 Aligned_cols=241 Identities=20% Similarity=0.289 Sum_probs=165.1
Q ss_pred ccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCcEEEecCc
Q 003192 442 CTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 442 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~ 520 (840)
.+.++..+..+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3466777777778887553 67888999888875 444445888999999999999888765 57888899999999999
Q ss_pred ccCCc--ccccCCCCCCEEeccCCCCCCCcH-HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCC
Q 003192 521 VLGDI--AVIGELKQLEILSLSSSDIEHLPR-EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT 597 (840)
Q Consensus 521 ~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~ 597 (840)
.++.+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..+|.. .+.++++|+
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~--------------~~~~l~~L~ 188 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG--------------AFEGLSNLR 188 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT--------------TTTTCSSCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc--------------hhhcccccC
Confidence 88874 348888999999999998887765 5788889999999888888777753 267788899
Q ss_pred eEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhc
Q 003192 598 TLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVL 677 (840)
Q Consensus 598 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 677 (840)
.|++++|.+..+|....+.+|+.|++. .|.....++..+..+++|+.|++++|......+
T Consensus 189 ~L~L~~n~l~~~~~~~~l~~L~~L~Ls--------------------~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 189 YLNLAMCNLREIPNLTPLIKLDELDLS--------------------GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp EEECTTSCCSSCCCCTTCSSCCEEECT--------------------TSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred eecCCCCcCccccccCCCcccCEEECC--------------------CCccCccChhhhccCccCCEEECCCCceeEECh
Confidence 999988888888754455556655553 333333333444455666666666654433333
Q ss_pred ccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccc
Q 003192 678 NELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNL 725 (840)
Q Consensus 678 ~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 725 (840)
..+ ..+++|+.|+|++|. +..++. .....+++|+.|+++++
T Consensus 249 ~~~--~~l~~L~~L~L~~N~-l~~~~~----~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 249 NAF--DNLQSLVEINLAHNN-LTLLPH----DLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TSS--TTCTTCCEEECTTSC-CCCCCT----TTTSSCTTCCEEECCSS
T ss_pred hhh--cCCCCCCEEECCCCC-CCccCh----hHhccccCCCEEEcCCC
Confidence 333 456666666666653 222221 12234566666666653
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=5.4e-18 Score=194.50 Aligned_cols=242 Identities=20% Similarity=0.154 Sum_probs=191.2
Q ss_pred cccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEec
Q 003192 439 LKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLD 518 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 518 (840)
.++++.|++++|.+..+|. .+++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence 4789999999999999988 6799999999999875 5665 68999999999999999987 67899999999
Q ss_pred CcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCe
Q 003192 519 QSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 519 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
+|.++.++. .+++|++|++++|.++.+|. .+.+|+.|++++ +.++.+|. .+++|+.
T Consensus 130 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~~------------------~~~~L~~ 185 (622)
T 3g06_A 130 GNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLPM------------------LPSGLQE 185 (622)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC------------------CCTTCCE
T ss_pred CCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCcc------------------cCCCCcE
Confidence 999988654 35999999999999999885 467899999999 56676763 3578999
Q ss_pred EEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcc
Q 003192 599 LEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLN 678 (840)
Q Consensus 599 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 678 (840)
|++++|.+..+|.. ..+|+.|.+. .|....++. .+++|+.|++++|... .++
T Consensus 186 L~Ls~N~l~~l~~~--~~~L~~L~L~--------------------~N~l~~l~~----~~~~L~~L~Ls~N~L~-~lp- 237 (622)
T 3g06_A 186 LSVSDNQLASLPTL--PSELYKLWAY--------------------NNRLTSLPA----LPSGLKELIVSGNRLT-SLP- 237 (622)
T ss_dssp EECCSSCCSCCCCC--CTTCCEEECC--------------------SSCCSSCCC----CCTTCCEEECCSSCCS-CCC-
T ss_pred EECCCCCCCCCCCc--cchhhEEECc--------------------CCcccccCC----CCCCCCEEEccCCccC-cCC-
Confidence 99999999888764 3556665553 333333332 2478999999987543 333
Q ss_pred cccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCccc
Q 003192 679 ELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSI 758 (840)
Q Consensus 679 ~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l 758 (840)
..+++|+.|++++|. +..++. .+++|+.|+++++ .++.+ |.....+++|+.|++++|+ +...
T Consensus 238 ----~~l~~L~~L~Ls~N~-L~~lp~--------~~~~L~~L~Ls~N-~L~~l---p~~l~~l~~L~~L~L~~N~-l~~~ 299 (622)
T 3g06_A 238 ----VLPSELKELMVSGNR-LTSLPM--------LPSGLLSLSVYRN-QLTRL---PESLIHLSSETTVNLEGNP-LSER 299 (622)
T ss_dssp ----CCCTTCCEEECCSSC-CSCCCC--------CCTTCCEEECCSS-CCCSC---CGGGGGSCTTCEEECCSCC-CCHH
T ss_pred ----CCCCcCcEEECCCCC-CCcCCc--------ccccCcEEeCCCC-CCCcC---CHHHhhccccCEEEecCCC-CCCc
Confidence 456899999999974 444432 5789999999995 67777 4556789999999999965 7665
Q ss_pred cc
Q 003192 759 LS 760 (840)
Q Consensus 759 ~~ 760 (840)
.+
T Consensus 300 ~~ 301 (622)
T 3g06_A 300 TL 301 (622)
T ss_dssp HH
T ss_pred CH
Confidence 44
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.8e-19 Score=209.65 Aligned_cols=350 Identities=14% Similarity=0.077 Sum_probs=210.2
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcC-CCc-eeEEEecCCcC-C--CCchhhhcccCCcEEEecCcccCCc------ccc
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAG-MIE-LRVLDLTKMHL-L--SLPSSLHLLVNLRTLCLDQSVLGDI------AVI 528 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~-~--~lp~~i~~L~~L~~L~L~~~~l~~~------~~i 528 (840)
.+++|++|++++|.+....+.. +.. ++. |++|++++|.. . .++..+..+++|++|+|++|.++.. ..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~-l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDR-LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHH-HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHH-HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 5899999999988665433333 333 444 99999999862 2 3444556899999999999987542 235
Q ss_pred cCCCCCCEEeccCCCCC-----CCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEe
Q 003192 529 GELKQLEILSLSSSDIE-----HLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHI 603 (840)
Q Consensus 529 ~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~ 603 (840)
..+++|++|++++|.++ .++..+.++++|++|++++|. +..+|. .+..+++|+.|+++.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~---------------~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVG---------------FFKAAANLEEFCGGS 252 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHH---------------HHHHCTTCCEEEECB
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHH---------------HHhhhhHHHhhcccc
Confidence 67899999999999886 445556789999999999964 444443 367889999999985
Q ss_pred ecCc----cCCCcc-ccccCcEEEEEEcCc---CCcCCCCCCccEEEEeecCcccch-hhHHHhhcccceeeecccccch
Q 003192 604 QGAK----ILPRGL-FSKKLERYKILIGDE---WDWHGKYETSRTLKLMLNTRTCLE-NGTIMQLKGIEDLYLGELQDVK 674 (840)
Q Consensus 604 ~~~~----~~~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~l~~l~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~ 674 (840)
.... ..+..+ .+.+|+.+.+..... .......+.++.|++..+...... ......+++|+.|++.++....
T Consensus 253 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~ 332 (592)
T 3ogk_B 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDR 332 (592)
T ss_dssp CCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHH
T ss_pred cccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHH
Confidence 3322 111222 567888887743321 123445678888988866532222 2335668999999998543323
Q ss_pred hhcccccccccCCCcEEEeec----------CCCcceeecCCCCccCCCCCccceeccccccccccccccccCcc-cCCC
Q 003192 675 NVLNELDAEGFLQLKHLHVQN----------SPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAA-SFCN 743 (840)
Q Consensus 675 ~~~~~l~~~~l~~L~~L~l~~----------~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~-~l~~ 743 (840)
.+.... ..+++|++|++++ |..+.... .......+++|+.|.+ +|+.++... ....+ .+++
T Consensus 333 ~l~~~~--~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~---~~~l~~~~~~L~~L~l-~~~~l~~~~--~~~l~~~~~~ 404 (592)
T 3ogk_B 333 GLEVLA--QYCKQLKRLRIERGADEQGMEDEEGLVSQRG---LIALAQGCQELEYMAV-YVSDITNES--LESIGTYLKN 404 (592)
T ss_dssp HHHHHH--HHCTTCCEEEEECCCCSSTTSSTTCCCCHHH---HHHHHHHCTTCSEEEE-EESCCCHHH--HHHHHHHCCS
T ss_pred HHHHHH--HhCCCCCEEEeecCccccccccccCccCHHH---HHHHHhhCccCeEEEe-ecCCccHHH--HHHHHhhCCC
Confidence 233222 5688999999995 55443210 0001134677777777 344443321 11111 2566
Q ss_pred CCEEEEe---cCCCCcccccH----HHhhhcccCcEEEEccccc-chh---------------hccc----cccc-cccc
Q 003192 744 LGIIKVG---NCNKLKSILSV----SIARGLQQLQVIDVTECKS-MEV---------------ILGT----EEER-ISSN 795 (840)
Q Consensus 744 L~~L~l~---~C~~L~~l~~~----~~~~~l~~L~~L~l~~c~~-l~~---------------~~~~----~~~~-~~~~ 795 (840)
|+.|+++ .|+.+++.|.. ..+.++++|++|++++|.+ +.. +.-. .... ...+
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 484 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH
Confidence 7777666 34555553221 1234566666666654432 111 1000 0000 0112
Q ss_pred hhhcccccccccccccccc-cccCcccccccceeecCCCC
Q 003192 796 QEIELITPRGIQKCSLTAE-AATNEITFSKLKSLSLSYLP 834 (840)
Q Consensus 796 ~~l~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~L~~cp 834 (840)
..+++|+.|++++|+.... ++.....+++|++|+|++|+
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 3456778888888874322 33334567888888888876
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=7e-21 Score=214.26 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=116.7
Q ss_pred cccccEEeecccCCCCCCCc--C-CCCCceEEEecCCCCCCC----CChhhhcCCCceeEEEecCCcCCC-Cchhh-hcc
Q 003192 439 LKFCTAISLHKCDVNELPEE--L-ECPQLKFFYMYPKDPALK----IPDKFFAGMIELRVLDLTKMHLLS-LPSSL-HLL 509 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i-~~L 509 (840)
++.+++|+++++.+...+.. + .+++|++|++++|.+... ++ ..+..+++|++|++++|.+.. .+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 35678899988887543321 2 678899999998886532 22 347788999999999988764 23333 335
Q ss_pred c----CCcEEEecCcccCC------cccccCCCCCCEEeccCCCCCCC-cHHHh-----ccCCCCEEecCCCCCCcccc-
Q 003192 510 V----NLRTLCLDQSVLGD------IAVIGELKQLEILSLSSSDIEHL-PREIG-----RLSKLRLLDLTNCSKLKSIP- 572 (840)
Q Consensus 510 ~----~L~~L~L~~~~l~~------~~~i~~L~~L~~L~L~~~~l~~l-p~~i~-----~L~~L~~L~l~~c~~l~~lp- 572 (840)
. +|++|++++|.++. +..+.++++|++|++++|.++.. +..+. ..++|++|++++|. ++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHH
Confidence 5 69999999998874 45688889999999999988732 22222 25679999998864 33211
Q ss_pred ccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCcc-------ccccCcEEEEEEc
Q 003192 573 PNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGL-------FSKKLERYKILIG 626 (840)
Q Consensus 573 ~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~~ 626 (840)
.. ....+..+++|++|++++|.+....... ...+|+.|++..+
T Consensus 160 ~~-----------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 160 EP-----------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HH-----------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred HH-----------HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 11 1234677889999999988875432211 1346777766433
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=8.7e-21 Score=213.46 Aligned_cols=176 Identities=19% Similarity=0.266 Sum_probs=126.2
Q ss_pred ccccccEEeecccCCC-----CCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCC----ceeEEEecCCcCC-----CC
Q 003192 438 TLKFCTAISLHKCDVN-----ELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMI----ELRVLDLTKMHLL-----SL 502 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~-----~l 502 (840)
..+++++|++++|.+. .++..+ .+++|++|++++|.+....+..++..++ +|++|++++|.+. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 3567899999999886 344444 7899999999999875544445556676 7999999999987 45
Q ss_pred chhhhcccCCcEEEecCcccCC--cccc-----cCCCCCCEEeccCCCCCC-----CcHHHhccCCCCEEecCCCCCCcc
Q 003192 503 PSSLHLLVNLRTLCLDQSVLGD--IAVI-----GELKQLEILSLSSSDIEH-----LPREIGRLSKLRLLDLTNCSKLKS 570 (840)
Q Consensus 503 p~~i~~L~~L~~L~L~~~~l~~--~~~i-----~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~c~~l~~ 570 (840)
|..+..+++|++|++++|.++. +..+ ...++|++|++++|.++. ++..+..+++|++|++++|. ++.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~ 184 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INE 184 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cch
Confidence 7889999999999999999865 3332 236689999999999884 46677889999999999964 433
Q ss_pred cc-ccccccccccccCChhhh-hcCCCCCeEEEEeecCccC-----CCcc-ccccCcEEEEEE
Q 003192 571 IP-PNVERLNIERSNASLDEL-KHLSRLTTLEIHIQGAKIL-----PRGL-FSKKLERYKILI 625 (840)
Q Consensus 571 lp-~~l~~L~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~-----~~~~-~~~~L~~L~l~~ 625 (840)
.+ ..+. ..+ ...++|++|++++|.+... +..+ .+++|+.|++..
T Consensus 185 ~~~~~l~-----------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 185 AGVRVLC-----------QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHHHHH-----------HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHH-----------HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 21 1110 111 1356888888888877652 3222 445666666543
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=1.2e-19 Score=211.28 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCC-cCCC--CchhhhcccCCcEEEecCcccCC--cccc----cC
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKM-HLLS--LPSSLHLLVNLRTLCLDQSVLGD--IAVI----GE 530 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~L~~L~~L~L~~~~l~~--~~~i----~~ 530 (840)
.+++|++|++++|.+....+..+...+++|++|++++| .+.. ++..+.++++|++|++++|.++. +..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45666666666665443333332234666666666666 3332 34444466666666666666543 1112 24
Q ss_pred CCCCCEEeccCCC--CC--CCcHHHhccCCCCEEecCCCCCCcccc
Q 003192 531 LKQLEILSLSSSD--IE--HLPREIGRLSKLRLLDLTNCSKLKSIP 572 (840)
Q Consensus 531 L~~L~~L~L~~~~--l~--~lp~~i~~L~~L~~L~l~~c~~l~~lp 572 (840)
+++|++|++++|. +. .++.-+.++++|++|++++|..+..+|
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~ 228 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA 228 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH
Confidence 5566666666664 22 122223445666666666654444333
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=3.7e-18 Score=178.50 Aligned_cols=265 Identities=17% Similarity=0.186 Sum_probs=148.3
Q ss_pred eEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCcEEEecCcccCC--cccccCCCCCCEEeccC
Q 003192 465 KFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLRTLCLDQSVLGD--IAVIGELKQLEILSLSS 541 (840)
Q Consensus 465 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~ 541 (840)
++++..++.+ ..+|.. -.++|++|++++|.+..+| ..+..+++|++|++++|.++. +..++++++|++|++++
T Consensus 14 ~~~~c~~~~l-~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGL-QAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCC-SSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCc-ccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4556655554 345543 2456777777777777665 357777777777777777665 34577777777777777
Q ss_pred CC-CCCC-cHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCc
Q 003192 542 SD-IEHL-PREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLE 619 (840)
Q Consensus 542 ~~-l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 619 (840)
|. ++.+ |..+..+++|++|++++| .+..+++ ..+.++++|++|++++|.+..++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~~~------- 147 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGP--------------GLFRGLAALQYLYLQDNALQALPDD------- 147 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCT--------------TTTTTCTTCCEEECCSSCCCCCCTT-------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCC-cCCEECH--------------hHhhCCcCCCEEECCCCcccccCHh-------
Confidence 75 6666 555677777777777774 3443332 1245566677777766655444322
Q ss_pred EEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCc
Q 003192 620 RYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYI 699 (840)
Q Consensus 620 ~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 699 (840)
.+..+++|+.|++++|...
T Consensus 148 -----------------------------------~~~~l~~L~~L~l~~n~l~-------------------------- 166 (285)
T 1ozn_A 148 -----------------------------------TFRDLGNLTHLFLHGNRIS-------------------------- 166 (285)
T ss_dssp -----------------------------------TTTTCTTCCEEECCSSCCC--------------------------
T ss_pred -----------------------------------HhccCCCccEEECCCCccc--------------------------
Confidence 1112344555555444322
Q ss_pred ceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccc
Q 003192 700 LCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECK 779 (840)
Q Consensus 700 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 779 (840)
.++.. ....+++|+.|+++++. +..+. +.....+++|+.|++++| +++.+++ ..+..+++|+.|++++++
T Consensus 167 -~~~~~----~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 167 -SVPER----AFRGLHSLDRLLLHQNR-VAHVH--PHAFRDLGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -EECTT----TTTTCTTCCEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSSC
T ss_pred -ccCHH----HhcCccccCEEECCCCc-ccccC--HhHccCcccccEeeCCCC-cCCcCCH-HHcccCcccCEEeccCCC
Confidence 22110 12234555555555532 33331 233445778888888884 5777755 346778888888888764
Q ss_pred cchhhccccccccccchhhcccccccccccccccccccCcc--cccccceeecCCCC
Q 003192 780 SMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNEI--TFSKLKSLSLSYLP 834 (840)
Q Consensus 780 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~--~l~~L~~L~L~~cp 834 (840)
-..+.... .-...++.+....+......|..+. .+..|+..++.+|.
T Consensus 237 ~~c~~~~~--------~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 237 WVCDCRAR--------PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp EECSGGGH--------HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred ccCCCCcH--------HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 32211100 0112233444444444455565443 46677777777773
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=189.07 Aligned_cols=242 Identities=19% Similarity=0.253 Sum_probs=138.2
Q ss_pred EEEecCCcCCCCchhhhcccCCcEEEecCcccCC--cccccCCCCCCEEeccCCCCCCCc-HHHhccCCCCEEecCCCCC
Q 003192 491 VLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGD--IAVIGELKQLEILSLSSSDIEHLP-REIGRLSKLRLLDLTNCSK 567 (840)
Q Consensus 491 ~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~c~~ 567 (840)
.++.++..++.+|..+. .++++|+|++|.++. +..++++++|++|+|++|.++.++ ..+.++++|++|++++| .
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-R 123 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-c
Confidence 44444555555554332 345555555555544 234555555555555555555443 33455555555555552 3
Q ss_pred CccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecC
Q 003192 568 LKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNT 647 (840)
Q Consensus 568 l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~ 647 (840)
++.+|.. .+..+++|+.|++++|.+..++..
T Consensus 124 l~~~~~~--------------~~~~l~~L~~L~L~~N~i~~~~~~----------------------------------- 154 (440)
T 3zyj_A 124 LTTIPNG--------------AFVYLSKLKELWLRNNPIESIPSY----------------------------------- 154 (440)
T ss_dssp CSSCCTT--------------TSCSCSSCCEEECCSCCCCEECTT-----------------------------------
T ss_pred CCeeCHh--------------HhhccccCceeeCCCCcccccCHH-----------------------------------
Confidence 4444431 134455555555555554433322
Q ss_pred cccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccc
Q 003192 648 RTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTN 727 (840)
Q Consensus 648 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 727 (840)
.+..+++|+.|++++|.....++.. ...++++|++|++++|. +..++ ....+++|+.|+++++ .
T Consensus 155 -------~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~-l~~~~------~~~~l~~L~~L~Ls~N-~ 218 (440)
T 3zyj_A 155 -------AFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCN-LREIP------NLTPLIKLDELDLSGN-H 218 (440)
T ss_dssp -------TTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSC-CSSCC------CCTTCSSCCEEECTTS-C
T ss_pred -------HhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCc-Ccccc------ccCCCcccCEEECCCC-c
Confidence 1122455555555555444443332 12678899999999875 33333 2356788899999885 5
Q ss_pred cccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccccccc
Q 003192 728 LEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITPRGIQ 807 (840)
Q Consensus 728 l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 807 (840)
+..+. +.....+++|+.|+++++ +++.+++ ..+..+++|++|+|++| .++.+..... ..+++|+.|+++
T Consensus 219 l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~------~~l~~L~~L~L~ 287 (440)
T 3zyj_A 219 LSAIR--PGSFQGLMHLQKLWMIQS-QIQVIER-NAFDNLQSLVEINLAHN-NLTLLPHDLF------TPLHHLERIHLH 287 (440)
T ss_dssp CCEEC--TTTTTTCTTCCEEECTTC-CCCEECT-TSSTTCTTCCEEECTTS-CCCCCCTTTT------SSCTTCCEEECC
T ss_pred cCccC--hhhhccCccCCEEECCCC-ceeEECh-hhhcCCCCCCEEECCCC-CCCccChhHh------ccccCCCEEEcC
Confidence 56553 334557888999998884 6877765 34677888999999885 5665543222 345667777777
Q ss_pred cccc
Q 003192 808 KCSL 811 (840)
Q Consensus 808 ~c~~ 811 (840)
+|+.
T Consensus 288 ~Np~ 291 (440)
T 3zyj_A 288 HNPW 291 (440)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 7664
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.3e-19 Score=192.41 Aligned_cols=263 Identities=15% Similarity=0.103 Sum_probs=198.0
Q ss_pred CceeEEEecCCcCCCCch-hhhcccCCcEEEecCcccCCc--ccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecC
Q 003192 487 IELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLT 563 (840)
Q Consensus 487 ~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 563 (840)
..++.++++++.+...+. .+..+++|++|++++|.++.+ ..++++++|++|++++|.++.++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 356677777777765444 445677999999999999883 569999999999999999987765 8999999999999
Q ss_pred CCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEE
Q 003192 564 NCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKL 643 (840)
Q Consensus 564 ~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L 643 (840)
+| .++.+| ..++|+.|++++|.+..++..
T Consensus 89 ~n-~l~~l~-------------------~~~~L~~L~l~~n~l~~~~~~------------------------------- 117 (317)
T 3o53_A 89 NN-YVQELL-------------------VGPSIETLHAANNNISRVSCS------------------------------- 117 (317)
T ss_dssp SS-EEEEEE-------------------ECTTCCEEECCSSCCSEEEEC-------------------------------
T ss_pred CC-cccccc-------------------CCCCcCEEECCCCccCCcCcc-------------------------------
Confidence 95 455444 347899999988877654422
Q ss_pred eecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccc
Q 003192 644 MLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLH 723 (840)
Q Consensus 644 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~ 723 (840)
.+++|+.|++++|......+..+ ..+++|++|++++|.. ..++.. .....+++|+.|+++
T Consensus 118 --------------~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l-~~~~~~---~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 118 --------------RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEI-DTVNFA---ELAASSDTLEHLNLQ 177 (317)
T ss_dssp --------------CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCC-CEEEGG---GGGGGTTTCCEEECT
T ss_pred --------------ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCC-CcccHH---HHhhccCcCCEEECC
Confidence 14678888888876555444444 7789999999999763 333211 112357899999999
Q ss_pred cccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccchhhccccc
Q 003192 724 NLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSNQEIELITP 803 (840)
Q Consensus 724 ~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~ 803 (840)
++ .++.++ ....+++|++|++++| +++.+++ .+..+++|++|++++| .++.+.. .+..+++|+.
T Consensus 178 ~N-~l~~~~----~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~L~~N-~l~~l~~-------~~~~l~~L~~ 241 (317)
T 3o53_A 178 YN-FIYDVK----GQVVFAKLKTLDLSSN-KLAFMGP--EFQSAAGVTWISLRNN-KLVLIEK-------ALRFSQNLEH 241 (317)
T ss_dssp TS-CCCEEE----CCCCCTTCCEEECCSS-CCCEECG--GGGGGTTCSEEECTTS-CCCEECT-------TCCCCTTCCE
T ss_pred CC-cCcccc----cccccccCCEEECCCC-cCCcchh--hhcccCcccEEECcCC-cccchhh-------HhhcCCCCCE
Confidence 95 466662 2235899999999995 6999876 3788999999999996 6665532 2346789999
Q ss_pred ccccccccc-cccccCcccccccceeecCCCCCcc
Q 003192 804 RGIQKCSLT-AEAATNEITFSKLKSLSLSYLPSLT 837 (840)
Q Consensus 804 L~l~~c~~l-~~~~~~l~~l~~L~~L~L~~cp~L~ 837 (840)
|++++|+.. ..+|..+..+++|+.|++.+++.++
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 999999988 7778888899999999988665543
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=6.9e-18 Score=176.41 Aligned_cols=152 Identities=21% Similarity=0.298 Sum_probs=109.1
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEEEecCcc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 521 (840)
+.++.+++.+..+|... .++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 46666677777776543 467888888887764 34545577888888888888888765 5677888888888888886
Q ss_pred -cCC--cccccCCCCCCEEeccCCCCCCC-cHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCC
Q 003192 522 -LGD--IAVIGELKQLEILSLSSSDIEHL-PREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT 597 (840)
Q Consensus 522 -l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~ 597 (840)
++. +..++.+++|++|++++|.++.+ |..+.++++|++|++++| .+..+|.. .++.+++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--------------~~~~l~~L~ 156 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDD--------------TFRDLGNLT 156 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------------TTTTCTTCC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHh--------------HhccCCCcc
Confidence 665 35577888888888888888766 455777888888888874 45555542 256677888
Q ss_pred eEEEEeecCccCCC
Q 003192 598 TLEIHIQGAKILPR 611 (840)
Q Consensus 598 ~L~l~~~~~~~~~~ 611 (840)
.|++++|.+..++.
T Consensus 157 ~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 157 HLFLHGNRISSVPE 170 (285)
T ss_dssp EEECCSSCCCEECT
T ss_pred EEECCCCcccccCH
Confidence 88888777766554
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=3.2e-18 Score=181.06 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=131.8
Q ss_pred cccccccEEeecccCCCCCCCcC--CCCCceEEEecCCCCCCC--CChhhhcCCCceeEEEecCCcCCCCchhhhcccCC
Q 003192 437 DTLKFCTAISLHKCDVNELPEEL--ECPQLKFFYMYPKDPALK--IPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNL 512 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L 512 (840)
...+++++|++++|.+..+|... ++++|++|++++|.+... .+.. +.++++|++|++++|.+..+|..+..+++|
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCC
Confidence 34578999999999999998753 899999999999987532 2444 567999999999999999999999999999
Q ss_pred cEEEecCcccCCc---ccccCCCCCCEEeccCCCCCC-CcHHHhccCCCCEEecCCCCCCc-cccccccccccccccCCh
Q 003192 513 RTLCLDQSVLGDI---AVIGELKQLEILSLSSSDIEH-LPREIGRLSKLRLLDLTNCSKLK-SIPPNVERLNIERSNASL 587 (840)
Q Consensus 513 ~~L~L~~~~l~~~---~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~l~~c~~l~-~lp~~l~~L~~~~~~~~~ 587 (840)
++|++++|.++.+ ..+..+++|++|++++|.+.. .|..+..+++|++|++++|.... .+|.
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------- 169 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-------------- 169 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS--------------
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh--------------
Confidence 9999999998773 468999999999999999984 45668899999999999964332 2443
Q ss_pred hhhhcCCCCCeEEEEeecCccCC
Q 003192 588 DELKHLSRLTTLEIHIQGAKILP 610 (840)
Q Consensus 588 ~~l~~l~~L~~L~l~~~~~~~~~ 610 (840)
.+..+++|+.|++++|.+..++
T Consensus 170 -~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 170 -IFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp -CCTTCTTCCEEECTTSCCCEEC
T ss_pred -HHhhCcCCCEEECCCCCcCCcC
Confidence 2567899999999998887664
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=5.9e-18 Score=189.35 Aligned_cols=221 Identities=20% Similarity=0.260 Sum_probs=173.9
Q ss_pred cccccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCc
Q 003192 437 DTLKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLR 513 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~ 513 (840)
....+++.|++++|.+..++. .+ ++++|++|++++|.+.. ++...|.++++|++|+|++|.++.+|. .+..+++|+
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 445789999999999987754 34 89999999999998854 454568999999999999999998876 588999999
Q ss_pred EEEecCcccCCc--ccccCCCCCCEEeccCC-CCCCCcH-HHhccCCCCEEecCCCCCCccccccccccccccccCChhh
Q 003192 514 TLCLDQSVLGDI--AVIGELKQLEILSLSSS-DIEHLPR-EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDE 589 (840)
Q Consensus 514 ~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~ 589 (840)
+|+|++|.++.+ ..+.++++|++|++++| .+..+|. .+.++++|++|++++| .+..+|.
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---------------- 213 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN---------------- 213 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC----------------
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc----------------
Confidence 999999999884 35899999999999995 7777765 4889999999999995 5666664
Q ss_pred hhcCCCCCeEEEEeecCccCCCcc--ccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeee
Q 003192 590 LKHLSRLTTLEIHIQGAKILPRGL--FSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYL 667 (840)
Q Consensus 590 l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l 667 (840)
+..+++|+.|++++|.+..++... .+.+|+.|+ +..+.....+...+..+++|+.|++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--------------------L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW--------------------VMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE--------------------CTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEE--------------------eCCCcCceECHHHhcCCCCCCEEEC
Confidence 678899999999999988775442 344555544 4444444555555666888999999
Q ss_pred cccccchhhcccccccccCCCcEEEeecCC
Q 003192 668 GELQDVKNVLNELDAEGFLQLKHLHVQNSP 697 (840)
Q Consensus 668 ~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 697 (840)
++|......+..+ ..+++|+.|+|++|+
T Consensus 274 ~~N~l~~~~~~~~--~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 274 AHNNLSSLPHDLF--TPLRYLVELHLHHNP 301 (452)
T ss_dssp CSSCCSCCCTTSS--TTCTTCCEEECCSSC
T ss_pred CCCcCCccChHHh--ccccCCCEEEccCCC
Confidence 8876543333333 668889999998875
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=6.7e-17 Score=170.56 Aligned_cols=190 Identities=19% Similarity=0.259 Sum_probs=133.8
Q ss_pred ccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEe
Q 003192 438 TLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCL 517 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L 517 (840)
.++++++|+++++.+..++....+++|++|++++|.+. .++. +.++++|++|++++|.+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 35678888888888877775447788888888877764 3443 677888888888888877765 5777888888888
Q ss_pred cCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCC
Q 003192 518 DQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT 597 (840)
Q Consensus 518 ~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~ 597 (840)
++|.++.++.++.+++|++|++++|.++.+|. ++.+++|++|++++| .+..+|. +..+++|+
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~----------------l~~l~~L~ 176 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP----------------LANLSKLT 176 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG----------------GTTCTTCC
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh----------------hcCCCCCC
Confidence 88887777668888888888888888877766 777888888888874 4554443 56677788
Q ss_pred eEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhc
Q 003192 598 TLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVL 677 (840)
Q Consensus 598 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 677 (840)
.|++++|.+..++. +..+++|+.|++++|.... ++
T Consensus 177 ~L~l~~n~l~~~~~--------------------------------------------l~~l~~L~~L~L~~N~l~~-~~ 211 (308)
T 1h6u_A 177 TLKADDNKISDISP--------------------------------------------LASLPNLIEVHLKNNQISD-VS 211 (308)
T ss_dssp EEECCSSCCCCCGG--------------------------------------------GGGCTTCCEEECTTSCCCB-CG
T ss_pred EEECCCCccCcChh--------------------------------------------hcCCCCCCEEEccCCccCc-cc
Confidence 88877776655442 2235667777776664432 22
Q ss_pred ccccccccCCCcEEEeecCC
Q 003192 678 NELDAEGFLQLKHLHVQNSP 697 (840)
Q Consensus 678 ~~l~~~~l~~L~~L~l~~~~ 697 (840)
. + ..+++|+.|++++|+
T Consensus 212 ~-l--~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 212 P-L--ANTSNLFIVTLTNQT 228 (308)
T ss_dssp G-G--TTCTTCCEEEEEEEE
T ss_pred c-c--cCCCCCCEEEccCCe
Confidence 1 2 567777777777754
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=6.6e-17 Score=167.35 Aligned_cols=155 Identities=25% Similarity=0.406 Sum_probs=123.7
Q ss_pred ccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchh-hhcccCCcEEEec
Q 003192 440 KFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSS-LHLLVNLRTLCLD 518 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~L~ 518 (840)
...+.++++++.+..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 356788999998888887553 67899999988874 55655688999999999999999888765 5789999999999
Q ss_pred CcccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCC
Q 003192 519 QSVLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSR 595 (840)
Q Consensus 519 ~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~ 595 (840)
+|.++.+ ..+.++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|... +..+++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~--------------~~~l~~ 158 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGV--------------FDKLTS 158 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT--------------TTTCTT
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhH--------------ccCCcc
Confidence 9998873 3578899999999999999877654 688899999999984 566666532 567888
Q ss_pred CCeEEEEeecCccCCC
Q 003192 596 LTTLEIHIQGAKILPR 611 (840)
Q Consensus 596 L~~L~l~~~~~~~~~~ 611 (840)
|+.|++++|.+..++.
T Consensus 159 L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCEEECCSSCCSCCCT
T ss_pred cceeEecCCcCcEeCh
Confidence 9999988887776654
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.5e-17 Score=186.96 Aligned_cols=217 Identities=20% Similarity=0.126 Sum_probs=146.6
Q ss_pred CCceeEEEecCCcCCCCc-hhhhcccCCcEEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCC
Q 003192 486 MIELRVLDLTKMHLLSLP-SSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTN 564 (840)
Q Consensus 486 l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 564 (840)
+++|++|+|++|.+..+| ..|+.+++|++|+|++|.++.+..++.+++|++|+|++|.++.+|. .++|++|++++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 348999999999998775 5889999999999999998875558999999999999998887774 38899999998
Q ss_pred CCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEe
Q 003192 565 CSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLM 644 (840)
Q Consensus 565 c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~ 644 (840)
| .+..+|. ..+++|+.|++++|.+..+++.
T Consensus 109 N-~l~~~~~-----------------~~l~~L~~L~L~~N~l~~~~~~-------------------------------- 138 (487)
T 3oja_A 109 N-NISRVSC-----------------SRGQGKKNIYLANNKITMLRDL-------------------------------- 138 (487)
T ss_dssp S-CCCCEEE-----------------CCCSSCEEEECCSSCCCSGGGB--------------------------------
T ss_pred C-cCCCCCc-----------------cccCCCCEEECCCCCCCCCCch--------------------------------
Confidence 5 4555543 2356788888888877655432
Q ss_pred ecCcccchhhHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceecccc
Q 003192 645 LNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHN 724 (840)
Q Consensus 645 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~ 724 (840)
.+..+++|+.|++++|......+..+ ...+++|+.|+|++|. +..++. ...+++|+.|++++
T Consensus 139 ----------~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N~-l~~~~~------~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 139 ----------DEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNF-IYDVKG------QVVFAKLKTLDLSS 200 (487)
T ss_dssp ----------CGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSC-CCEEEC------CCCCTTCCEEECCS
T ss_pred ----------hhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCCc-cccccc------cccCCCCCEEECCC
Confidence 12335666677776665444333333 1256777777777755 333321 12466777777776
Q ss_pred ccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccc
Q 003192 725 LTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSM 781 (840)
Q Consensus 725 ~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 781 (840)
+ .++.+ +.....+++|+.|++++| .++.+|+ .+..+++|+.|++++|+-.
T Consensus 201 N-~l~~~---~~~~~~l~~L~~L~Ls~N-~l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 201 N-KLAFM---GPEFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp S-CCCEE---CGGGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred C-CCCCC---CHhHcCCCCccEEEecCC-cCcccch--hhccCCCCCEEEcCCCCCc
Confidence 3 45555 223456677777777773 4666654 3556677777777776443
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.5e-18 Score=183.90 Aligned_cols=242 Identities=17% Similarity=0.182 Sum_probs=130.8
Q ss_pred CCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCC--CCchhhh-------cccCCcEEEecCcccCC--cccc-
Q 003192 461 CPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLL--SLPSSLH-------LLVNLRTLCLDQSVLGD--IAVI- 528 (840)
Q Consensus 461 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~i~-------~L~~L~~L~L~~~~l~~--~~~i- 528 (840)
.++|+.|++++|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.++. +..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34555566666655 555543322 666666666664 3555444 56667777777776654 3333
Q ss_pred -cCCCCCCEEeccCCCCCCCcHHHhcc-----CCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEE
Q 003192 529 -GELKQLEILSLSSSDIEHLPREIGRL-----SKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIH 602 (840)
Q Consensus 529 -~~L~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~ 602 (840)
+.+++|++|++++|.++.+|..++.+ ++|++|++++| .+..+|+ ..++++++|++|+++
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~--------------~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSC--------------EQVRVFPALSTLDLS 181 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCT--------------TTCCCCSSCCEEECC
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchH--------------HHhccCCCCCEEECC
Confidence 66677777777777666666666655 66777777663 3444432 124556667777776
Q ss_pred eecCccC---CCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccch--hhc
Q 003192 603 IQGAKIL---PRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVK--NVL 677 (840)
Q Consensus 603 ~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~ 677 (840)
+|.+... +..+ .+..+++|+.|++++|.... .++
T Consensus 182 ~N~l~~~~~~~~~~-----------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 182 DNPELGERGLISAL-----------------------------------------CPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp SCTTCHHHHHHHHS-----------------------------------------CTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred CCCcCcchHHHHHH-----------------------------------------HhccCCCCCEEECCCCcCcchHHHH
Confidence 6653211 1000 01224455555555543221 111
Q ss_pred ccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcc
Q 003192 678 NELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKS 757 (840)
Q Consensus 678 ~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~ 757 (840)
..+ ...+++|++|++++|......+ ......+++|+.|+++++ .++.++ ... +++|+.|+++++ +++.
T Consensus 221 ~~~-~~~l~~L~~L~Ls~N~l~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~ip---~~~--~~~L~~L~Ls~N-~l~~ 288 (312)
T 1wwl_A 221 SAL-AAARVQLQGLDLSHNSLRDAAG----APSCDWPSQLNSLNLSFT-GLKQVP---KGL--PAKLSVLDLSYN-RLDR 288 (312)
T ss_dssp HHH-HHTTCCCSEEECTTSCCCSSCC----CSCCCCCTTCCEEECTTS-CCSSCC---SSC--CSEEEEEECCSS-CCCS
T ss_pred HHH-HhcCCCCCEEECCCCcCCcccc----hhhhhhcCCCCEEECCCC-ccChhh---hhc--cCCceEEECCCC-CCCC
Confidence 110 1344666666666654211110 011233567777777763 344442 222 267888888874 5777
Q ss_pred cccHHHhhhcccCcEEEEccc
Q 003192 758 ILSVSIARGLQQLQVIDVTEC 778 (840)
Q Consensus 758 l~~~~~~~~l~~L~~L~l~~c 778 (840)
+|. +..+++|++|+++++
T Consensus 289 ~p~---~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 289 NPS---PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCC---TTTSCEEEEEECTTC
T ss_pred Chh---HhhCCCCCEEeccCC
Confidence 743 567788888888775
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.9e-17 Score=171.54 Aligned_cols=123 Identities=25% Similarity=0.375 Sum_probs=54.5
Q ss_pred cccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEe
Q 003192 439 LKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCL 517 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L 517 (840)
+++++.|+++++.+..++....+++|++|++++|.+.. ++ .+.++++|++|++++|.++.+|. .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 34455555555554444433344444444444444322 11 24444444444444444444433 2344444444444
Q ss_pred cCcccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCC
Q 003192 518 DQSVLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTN 564 (840)
Q Consensus 518 ~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~ 564 (840)
++|.++.+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 44444442 1144444444444444444444332 23444444444444
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=8.3e-19 Score=204.12 Aligned_cols=107 Identities=17% Similarity=0.240 Sum_probs=77.6
Q ss_pred CCCCceEEEecCCCCCCCC---C-----------hhhhcCCCceeEEEecCCcCCC-Cchhhh-cccCCcEEEecCc-cc
Q 003192 460 ECPQLKFFYMYPKDPALKI---P-----------DKFFAGMIELRVLDLTKMHLLS-LPSSLH-LLVNLRTLCLDQS-VL 522 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~---~-----------~~~~~~l~~L~~L~l~~~~~~~-lp~~i~-~L~~L~~L~L~~~-~l 522 (840)
.+++|++|.+.++.....+ | ..++..+++|++|++++|.+.. .+..+. .+++|++|+|++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 5677778877766432111 1 2335678999999999998873 345554 7899999999999 45
Q ss_pred CC--ccc-ccCCCCCCEEeccCCCCCC-----CcHHHhccCCCCEEecCCCC
Q 003192 523 GD--IAV-IGELKQLEILSLSSSDIEH-----LPREIGRLSKLRLLDLTNCS 566 (840)
Q Consensus 523 ~~--~~~-i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~c~ 566 (840)
+. ++. +.++++|++|++++|.++. ++.....+++|++|++++|.
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 54 444 4489999999999998663 33333467899999999975
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=7.5e-17 Score=168.38 Aligned_cols=156 Identities=22% Similarity=0.293 Sum_probs=114.0
Q ss_pred cccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEec
Q 003192 439 LKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLD 518 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 518 (840)
..+++.++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +.+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4567788888888887776553 67888888888774 34444577888888888888888776654 677888888888
Q ss_pred CcccCC-cccccCCCCCCEEeccCCCCCCCc-HHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCC
Q 003192 519 QSVLGD-IAVIGELKQLEILSLSSSDIEHLP-REIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRL 596 (840)
Q Consensus 519 ~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L 596 (840)
+|.++. +..+..+++|++|++++|.++.+| ..+.++++|++|++++ +.++.+|... +..+++|
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~--------------~~~l~~L 150 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGL--------------LTPTPKL 150 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTT--------------TTTCTTC
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhh--------------cccccCC
Confidence 888777 345777888888888888888776 4477788888888887 4566666533 5667788
Q ss_pred CeEEEEeecCccCCCc
Q 003192 597 TTLEIHIQGAKILPRG 612 (840)
Q Consensus 597 ~~L~l~~~~~~~~~~~ 612 (840)
+.|++++|.+..+|..
T Consensus 151 ~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 151 EKLSLANNNLTELPAG 166 (290)
T ss_dssp CEEECTTSCCSCCCTT
T ss_pred CEEECCCCcCCccCHH
Confidence 8888887777766654
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=4.7e-17 Score=165.20 Aligned_cols=144 Identities=21% Similarity=0.323 Sum_probs=106.0
Q ss_pred cCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCc-CCCCch-hhhcccCCcEEEecC-cccCCc-
Q 003192 450 CDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMH-LLSLPS-SLHLLVNLRTLCLDQ-SVLGDI- 525 (840)
Q Consensus 450 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~-~i~~L~~L~~L~L~~-~~l~~~- 525 (840)
..+..+|. + .++|++|++++|.+. .++...|.++++|++|++++|. ++.+|. .|..+++|++|++++ |.++.+
T Consensus 21 ~~l~~ip~-~-~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 21 KDIQRIPS-L-PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSCSSCCC-C-CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cCccccCC-C-CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 34666776 2 347888888888774 5555557888888888888886 777765 678888888888887 777773
Q ss_pred -ccccCCCCCCEEeccCCCCCCCcHHHhccCCCC---EEecCCCCCCccccccccccccccccCChhhhhcCCCCC-eEE
Q 003192 526 -AVIGELKQLEILSLSSSDIEHLPREIGRLSKLR---LLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT-TLE 600 (840)
Q Consensus 526 -~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~---~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~-~L~ 600 (840)
..++++++|++|++++|.++.+|. +..+++|+ +|++++|..++.+|.. .+.++++|+ .|+
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~--------------~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVN--------------AFQGLCNETLTLK 162 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTT--------------TTTTTBSSEEEEE
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcc--------------cccchhcceeEEE
Confidence 357788888888888888888886 77777777 8888886467766653 256677777 777
Q ss_pred EEeecCccCCC
Q 003192 601 IHIQGAKILPR 611 (840)
Q Consensus 601 l~~~~~~~~~~ 611 (840)
+++|.+..+|.
T Consensus 163 l~~n~l~~i~~ 173 (239)
T 2xwt_C 163 LYNNGFTSVQG 173 (239)
T ss_dssp CCSCCCCEECT
T ss_pred cCCCCCcccCH
Confidence 77776665553
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.4e-16 Score=165.61 Aligned_cols=124 Identities=24% Similarity=0.314 Sum_probs=65.3
Q ss_pred ccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCcEEE
Q 003192 440 KFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLRTLC 516 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~ 516 (840)
.++++|++++|.+..++. .+ ++++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 445555555555554443 22 5555555555555443 333333555555555555555555443 3455555555555
Q ss_pred ecCcccCCc--ccccCCCCCCEEeccCCCCCC--CcHHHhccCCCCEEecCC
Q 003192 517 LDQSVLGDI--AVIGELKQLEILSLSSSDIEH--LPREIGRLSKLRLLDLTN 564 (840)
Q Consensus 517 L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~ 564 (840)
+++|.+..+ ..++++++|++|++++|.++. +|..++++++|++|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence 555555542 135555555555555555553 455555555555555555
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=8.3e-17 Score=180.98 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=162.3
Q ss_pred cccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEE
Q 003192 439 LKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLC 516 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 516 (840)
.++++.|++++|.+..++. .+ .+++|++|++++|.+....| |..+++|++|++++|.++.+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 3478889999888877653 34 88889999998888754443 7788889999999988887664 37889999
Q ss_pred ecCcccCCcccccCCCCCCEEeccCCCCCCC-cHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCC
Q 003192 517 LDQSVLGDIAVIGELKQLEILSLSSSDIEHL-PREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSR 595 (840)
Q Consensus 517 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~ 595 (840)
+++|.++.++. ..+++|++|++++|.++.+ |..++++++|++|++++|......|..+ ...+++
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--------------~~~l~~ 170 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--------------AASSDT 170 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG--------------GGGTTT
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH--------------hhhCCc
Confidence 99988887433 3468889999999988866 4467888899999998854333333322 236788
Q ss_pred CCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchh
Q 003192 596 LTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKN 675 (840)
Q Consensus 596 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 675 (840)
|+.|++++|.+..++....+++|+.|++ +.|.....++. +..+++|+.|++++|... .
T Consensus 171 L~~L~Ls~N~l~~~~~~~~l~~L~~L~L--------------------s~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-~ 228 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDL--------------------SSNKLAFMGPE-FQSAAGVTWISLRNNKLV-L 228 (487)
T ss_dssp CCEEECTTSCCCEEECCCCCTTCCEEEC--------------------CSSCCCEECGG-GGGGTTCSEEECTTSCCC-E
T ss_pred ccEEecCCCccccccccccCCCCCEEEC--------------------CCCCCCCCCHh-HcCCCCccEEEecCCcCc-c
Confidence 9999999888877765544444544444 44444445544 445788888888876544 3
Q ss_pred hcccccccccCCCcEEEeecCCCc-ceeecCCCCccCCCCCccceeccccc
Q 003192 676 VLNELDAEGFLQLKHLHVQNSPYI-LCIVDSVEGVACDAFPLLESLFLHNL 725 (840)
Q Consensus 676 ~~~~l~~~~l~~L~~L~l~~~~~l-~~l~~~~~~~~~~~~~~L~~L~l~~~ 725 (840)
+|..+ ..+++|+.|++++|+.. ..++. ....+++|+.|.+..+
T Consensus 229 lp~~l--~~l~~L~~L~l~~N~l~c~~~~~-----~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 229 IEKAL--RFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTV 272 (487)
T ss_dssp ECTTC--CCCTTCCEEECTTCCBCHHHHHH-----HHTTCHHHHHHHHHHH
T ss_pred cchhh--ccCCCCCEEEcCCCCCcCcchHH-----HHHhCCCCcEEecccc
Confidence 55554 66788888888887643 11111 1234666666666543
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=2.2e-17 Score=174.81 Aligned_cols=219 Identities=16% Similarity=0.143 Sum_probs=139.9
Q ss_pred ccEEeecccCCCC--CCCcC--------CCCCceEEEecCCCCCCCCChhhh-cCCCceeEEEecCCcCCCCchhhhcc-
Q 003192 442 CTAISLHKCDVNE--LPEEL--------ECPQLKFFYMYPKDPALKIPDKFF-AGMIELRVLDLTKMHLLSLPSSLHLL- 509 (840)
Q Consensus 442 ~~~l~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~lp~~i~~L- 509 (840)
++.|++++|.+.. +|... ++++|++|++++|.+...+|..+| ..+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 5666666666532 33322 477888888888877766776643 77888888888888887777777777
Q ss_pred ----cCCcEEEecCcccCCc--ccccCCCCCCEEeccCCCCCC---CcHHH--hccCCCCEEecCCCCCCcccccccccc
Q 003192 510 ----VNLRTLCLDQSVLGDI--AVIGELKQLEILSLSSSDIEH---LPREI--GRLSKLRLLDLTNCSKLKSIPPNVERL 578 (840)
Q Consensus 510 ----~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~---lp~~i--~~L~~L~~L~l~~c~~l~~lp~~l~~L 578 (840)
++|++|++++|.+..+ ..++++++|++|++++|.+.. +|..+ +.+++|++|++++| .++.+|...
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--- 220 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVC--- 220 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHH---
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHH---
Confidence 7888888888887762 467788888888888887653 34455 77788888888874 444333210
Q ss_pred ccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHh
Q 003192 579 NIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQ 658 (840)
Q Consensus 579 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~ 658 (840)
..-+.++++|+.|++++|.+...++.. ....
T Consensus 221 --------~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------------------------------~~~~ 251 (312)
T 1wwl_A 221 --------SALAAARVQLQGLDLSHNSLRDAAGAP-----------------------------------------SCDW 251 (312)
T ss_dssp --------HHHHHTTCCCSEEECTTSCCCSSCCCS-----------------------------------------CCCC
T ss_pred --------HHHHhcCCCCCEEECCCCcCCcccchh-----------------------------------------hhhh
Confidence 011356678888888877776544210 0111
Q ss_pred hcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccc
Q 003192 659 LKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNL 725 (840)
Q Consensus 659 l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 725 (840)
+++|+.|++++|... .++..+ .++|++|++++|. +..++ ....+++|+.|+++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~----~~~L~~L~Ls~N~-l~~~p------~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGL----PAKLSVLDLSYNR-LDRNP------SPDELPQVGNLSLKGN 306 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSC----CSEEEEEECCSSC-CCSCC------CTTTSCEEEEEECTTC
T ss_pred cCCCCEEECCCCccC-hhhhhc----cCCceEEECCCCC-CCCCh------hHhhCCCCCEEeccCC
Confidence 456777777766543 444443 1677777777764 33322 1346777777777763
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=2.1e-16 Score=164.31 Aligned_cols=216 Identities=18% Similarity=0.271 Sum_probs=162.1
Q ss_pred EeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCcccC
Q 003192 445 ISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVLG 523 (840)
Q Consensus 445 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~ 523 (840)
+.-.+..+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+|. .+..+++|++|++++|.++
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4444556667776543 57999999999885 4555558999999999999999997765 7999999999999999998
Q ss_pred C--cccccCCCCCCEEeccCCCCCCCcH-HHhccCCCCEEecCCCCCCcc--ccccccccccccccCChhhhhcCCCCCe
Q 003192 524 D--IAVIGELKQLEILSLSSSDIEHLPR-EIGRLSKLRLLDLTNCSKLKS--IPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 524 ~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~--lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
. +..++++++|++|++++|.++.++. .++++++|++|++++| .+.. +|. .+.++++|+.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~---------------~~~~l~~L~~ 153 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPE---------------YFSNLTNLEH 153 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCG---------------GGGGCTTCCE
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCch---------------hhccCCCCCE
Confidence 7 3569999999999999999998765 5899999999999995 4544 343 4678899999
Q ss_pred EEEEeecCccCCCcc--ccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhh
Q 003192 599 LEIHIQGAKILPRGL--FSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNV 676 (840)
Q Consensus 599 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 676 (840)
|++++|.+..++... .+.+|+.+.+ .+++..+.....+...+. ..+|+.|++++|......
T Consensus 154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l----------------~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNL----------------SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVP 216 (276)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCE----------------EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCC
T ss_pred EECCCCCCCcCCHHHhhhhhhccccce----------------eeecCCCcccccCccccC-CCcccEEECCCCceeecC
Confidence 999999998876542 3444442211 233444444444444433 347999999987744332
Q ss_pred cccccccccCCCcEEEeecCC
Q 003192 677 LNELDAEGFLQLKHLHVQNSP 697 (840)
Q Consensus 677 ~~~l~~~~l~~L~~L~l~~~~ 697 (840)
+..+ ..+++|+.|++++|+
T Consensus 217 ~~~~--~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 217 DGIF--DRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTTT--TTCCSCCEEECCSSC
T ss_pred HhHh--cccccccEEEccCCc
Confidence 2233 678999999999876
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=1.3e-16 Score=161.88 Aligned_cols=158 Identities=13% Similarity=0.219 Sum_probs=132.3
Q ss_pred ccccccEEeecccCCCCCCCc-C-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecC-CcCCCCch-hhhcccCCc
Q 003192 438 TLKFCTAISLHKCDVNELPEE-L-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTK-MHLLSLPS-SLHLLVNLR 513 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~-~i~~L~~L~ 513 (840)
...+++.|++++|.+..++.. + ++++|++|++++|.....++...|.++++|++|++++ |.++.+|. .|..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 556899999999999888873 3 8999999999999744567776799999999999998 99998874 788999999
Q ss_pred EEEecCcccCCcccccCCCCCC---EEeccCC-CCCCCcHH-HhccCCCC-EEecCCCCCCccccccccccccccccCCh
Q 003192 514 TLCLDQSVLGDIAVIGELKQLE---ILSLSSS-DIEHLPRE-IGRLSKLR-LLDLTNCSKLKSIPPNVERLNIERSNASL 587 (840)
Q Consensus 514 ~L~L~~~~l~~~~~i~~L~~L~---~L~L~~~-~l~~lp~~-i~~L~~L~-~L~l~~c~~l~~lp~~l~~L~~~~~~~~~ 587 (840)
+|++++|.++.++.++.+++|+ +|++++| .++.+|.. +.++++|+ +|++++| .+..+|...
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~------------ 175 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYA------------ 175 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTT------------
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhh------------
Confidence 9999999999877788899988 9999999 99988765 88999999 9999994 567887643
Q ss_pred hhhhcCCCCCeEEEEeec-CccCCC
Q 003192 588 DELKHLSRLTTLEIHIQG-AKILPR 611 (840)
Q Consensus 588 ~~l~~l~~L~~L~l~~~~-~~~~~~ 611 (840)
+.. ++|+.|++++|. +..++.
T Consensus 176 --~~~-~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 176 --FNG-TKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp --TTT-CEEEEEECTTCTTCCEECT
T ss_pred --cCC-CCCCEEEcCCCCCcccCCH
Confidence 333 678888888773 655543
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=5.3e-16 Score=161.95 Aligned_cols=134 Identities=25% Similarity=0.344 Sum_probs=108.0
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEEEecCcccCCcccccCCCCCCEEe
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILS 538 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~ 538 (840)
++++++++++.++.+. .+|..+ .+.+++|++++|.+..+ |..+..+++|++|+|++|.++.++..+.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 5678889999888774 666553 36788999999998876 457888999999999999988876668889999999
Q ss_pred ccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCc
Q 003192 539 LSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRG 612 (840)
Q Consensus 539 L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 612 (840)
+++|.++.+|..+..+++|++|++++ +.++.+|+. .+.++++|+.|++++|.+..+|..
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~--------------~~~~l~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLG--------------ALRGLGELQELYLKGNELKTLPPG 142 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSS--------------TTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHH--------------HHcCCCCCCEEECCCCCCCccChh
Confidence 99999998888888899999999988 466666653 267788899999888888776654
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=8.8e-16 Score=158.84 Aligned_cols=171 Identities=27% Similarity=0.447 Sum_probs=145.7
Q ss_pred ccccccEEeecccCCCCCCCc-C-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcE
Q 003192 438 TLKFCTAISLHKCDVNELPEE-L-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRT 514 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~ 514 (840)
.+.++++|++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|++++|.+..+|. .+..+++|++
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 456899999999999888863 3 8999999999999875 6777778999999999999999998876 5789999999
Q ss_pred EEecCcccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhh
Q 003192 515 LCLDQSVLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELK 591 (840)
Q Consensus 515 L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~ 591 (840)
|++++|.++.+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|+. .+.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------------~~~ 178 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEG--------------AFD 178 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT--------------TTT
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChh--------------Hhc
Confidence 99999999884 4489999999999999999998876 789999999999995 56666653 367
Q ss_pred cCCCCCeEEEEeecCccCCCcc--ccccCcEEEEE
Q 003192 592 HLSRLTTLEIHIQGAKILPRGL--FSKKLERYKIL 624 (840)
Q Consensus 592 ~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 624 (840)
++++|+.|++++|.+..+|... .+.+|+.|++.
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 8899999999999999888753 45566666654
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=3.9e-16 Score=161.63 Aligned_cols=208 Identities=21% Similarity=0.299 Sum_probs=128.5
Q ss_pred EEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccC
Q 003192 444 AISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLG 523 (840)
Q Consensus 444 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~ 523 (840)
.+++..+.+........+++|+.|.+.+|.+. .++. +..+++|++|++++|.+..++ .+..+++|++|++++|.++
T Consensus 23 ~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHTCSCTTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred HHHhcCcccccccccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccC
Confidence 33444444433333336677777777777653 3332 667777777777777777654 6777777777777777777
Q ss_pred Cc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEE
Q 003192 524 DI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLE 600 (840)
Q Consensus 524 ~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~ 600 (840)
.+ ..++++++|++|++++|.++.+|.. ++++++|++|++++| .++.+|+.. ++++++|+.|+
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--------------~~~l~~L~~L~ 163 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGV--------------FDKLTNLTELD 163 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT--------------TTTCTTCCEEE
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHH--------------hccCccCCEEE
Confidence 63 2367777777777777777766554 567777777777774 455555422 45677777777
Q ss_pred EEeecCccCCCcc--ccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcc
Q 003192 601 IHIQGAKILPRGL--FSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLN 678 (840)
Q Consensus 601 l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 678 (840)
+++|.+..++... .+++|+.|++. .|.....+...+..+++|+.|++++|...
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~--------------------~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 218 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLY--------------------QNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 218 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECC--------------------SSCCSCCCTTTTTTCTTCCEEECCSSCBC-----
T ss_pred CCCCCcCccCHHHhcCCccCCEEECC--------------------CCcCCccCHHHHhCCcCCCEEEccCCCcc-----
Confidence 7777777666543 34455555443 23333344444455677777777765421
Q ss_pred cccccccCCCcEEEeecCCCc
Q 003192 679 ELDAEGFLQLKHLHVQNSPYI 699 (840)
Q Consensus 679 ~l~~~~l~~L~~L~l~~~~~l 699 (840)
+.+++|+.|+++.+...
T Consensus 219 ----~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 219 ----CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp ----CCTTTTHHHHHHHHHTG
T ss_pred ----ccCcHHHHHHHHHHhCC
Confidence 33556666666655433
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=4e-16 Score=167.36 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=39.2
Q ss_pred CceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCC---cccccCCCCCCEEeccCCCCC-CCcHHHhccCCCCEEec
Q 003192 487 IELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGD---IAVIGELKQLEILSLSSSDIE-HLPREIGRLSKLRLLDL 562 (840)
Q Consensus 487 ~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l 562 (840)
+.+++|++++|.+...+..+..+++|++|++++|.+.. +..++.+++|++|++++|.++ ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 44555555555554444444445555555555555432 223445555555555555544 34444555555555555
Q ss_pred CCC
Q 003192 563 TNC 565 (840)
Q Consensus 563 ~~c 565 (840)
++|
T Consensus 150 ~~~ 152 (336)
T 2ast_B 150 SGC 152 (336)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=1.8e-15 Score=162.77 Aligned_cols=237 Identities=19% Similarity=0.165 Sum_probs=147.2
Q ss_pred eEEEecCCcCCCCchhhhcccCCcEEEecCcccCCcc--cccCCCCCCEEeccCCCCC-CCcH-HHhccCCCCEEecCCC
Q 003192 490 RVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDIA--VIGELKQLEILSLSSSDIE-HLPR-EIGRLSKLRLLDLTNC 565 (840)
Q Consensus 490 ~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~--~i~~L~~L~~L~L~~~~l~-~lp~-~i~~L~~L~~L~l~~c 565 (840)
++++.++++++.+|..+ .+++++|+|++|.|+.++ .|+++++|++|+|++|.+. .+|. .+.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45667777777777655 356777777777777642 4677777777777777764 3543 3567777776555555
Q ss_pred CCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCcccccc--CcEEEEEEcCcCCcCCCCCCccEEEE
Q 003192 566 SKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKK--LERYKILIGDEWDWHGKYETSRTLKL 643 (840)
Q Consensus 566 ~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~l~~l~L 643 (840)
+.+..+|+.. +.++++|+.|++++|.+..++....... +..+.+...
T Consensus 90 N~l~~l~~~~--------------f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~----------------- 138 (350)
T 4ay9_X 90 NNLLYINPEA--------------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN----------------- 138 (350)
T ss_dssp TTCCEECTTS--------------BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------
T ss_pred CcccccCchh--------------hhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------
Confidence 6677766532 5677788888888888777765542222 222222111
Q ss_pred eecCcccchhhHHHhh-cccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceecc
Q 003192 644 MLNTRTCLENGTIMQL-KGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFL 722 (840)
Q Consensus 644 ~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l 722 (840)
+.....+...+..+ ..++.|+++++... .++... ...++|+.|.+.++..++.++.. .+..+++|+.|++
T Consensus 139 --~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~--f~~~~L~~l~l~~~n~l~~i~~~----~f~~l~~L~~LdL 209 (350)
T 4ay9_X 139 --INIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA--FNGTQLDELNLSDNNNLEELPND----VFHGASGPVILDI 209 (350)
T ss_dssp --TTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTS--STTEEEEEEECTTCTTCCCCCTT----TTTTEECCSEEEC
T ss_pred --cccccccccchhhcchhhhhhcccccccc-CCChhh--ccccchhHHhhccCCcccCCCHH----HhccCcccchhhc
Confidence 11122222222222 35777777775433 333332 23456888888877777666532 2346778888888
Q ss_pred ccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcc
Q 003192 723 HNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTE 777 (840)
Q Consensus 723 ~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~ 777 (840)
++ ++++.++ ...|.+|+.|.+.+|++++.+|+ +..+++|+.+++.+
T Consensus 210 s~-N~l~~lp-----~~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 210 SR-TRIHSLP-----SYGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp TT-SCCCCCC-----SSSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred CC-CCcCccC-----hhhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 87 4566662 23577888888888888888875 46778888888764
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1.9e-15 Score=157.97 Aligned_cols=167 Identities=24% Similarity=0.291 Sum_probs=138.9
Q ss_pred ccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEe
Q 003192 438 TLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCL 517 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L 517 (840)
.+++++.|++++|.+..++....+++|++|++++|.+.. ++. +.++++|++|++++|.+..+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 456789999999999888775588999999999998754 443 7899999999999999988765 889999999999
Q ss_pred cCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCC
Q 003192 518 DQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT 597 (840)
Q Consensus 518 ~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~ 597 (840)
++|.++.++.++.+++|++|++++|.++.++ .++.+++|++|++++| .+..+++ +..+++|+
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N-~l~~~~~----------------l~~l~~L~ 181 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN-QISDIVP----------------LAGLTKLQ 181 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG----------------GTTCTTCC
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCC-ccccchh----------------hcCCCccC
Confidence 9999998888999999999999999999884 5889999999999985 5555543 56788999
Q ss_pred eEEEEeecCccCCCccccccCcEEEEEEc
Q 003192 598 TLEIHIQGAKILPRGLFSKKLERYKILIG 626 (840)
Q Consensus 598 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 626 (840)
.|++++|.++.++....+++|+.|++..+
T Consensus 182 ~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 182 NLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred EEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 99999998888876446677777777544
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=3.4e-16 Score=167.91 Aligned_cols=254 Identities=18% Similarity=0.128 Sum_probs=166.1
Q ss_pred ceeEEEecCCcCCCCchhhhcc--cCCcEEEecCcccCC-cccccCCCCCCEEeccCCCCCC--CcHHHhccCCCCEEec
Q 003192 488 ELRVLDLTKMHLLSLPSSLHLL--VNLRTLCLDQSVLGD-IAVIGELKQLEILSLSSSDIEH--LPREIGRLSKLRLLDL 562 (840)
Q Consensus 488 ~L~~L~l~~~~~~~lp~~i~~L--~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l 562 (840)
.++.|+++++.+. |..+..+ .++++|++++|.+.. ++.+.++++|++|++++|.++. +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3678888888776 6677887 899999999999887 5668889999999999999873 8888999999999999
Q ss_pred CCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEee-cCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEE
Q 003192 563 TNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQ-GAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTL 641 (840)
Q Consensus 563 ~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 641 (840)
++|......| ..+..+++|++|++++| .++..
T Consensus 126 ~~~~l~~~~~---------------~~l~~~~~L~~L~L~~~~~l~~~-------------------------------- 158 (336)
T 2ast_B 126 EGLRLSDPIV---------------NTLAKNSNLVRLNLSGCSGFSEF-------------------------------- 158 (336)
T ss_dssp TTCBCCHHHH---------------HHHTTCTTCSEEECTTCBSCCHH--------------------------------
T ss_pred cCcccCHHHH---------------HHHhcCCCCCEEECCCCCCCCHH--------------------------------
Confidence 9975322333 34677899999999876 33310
Q ss_pred EEeecCcccchhhHHHhhcccceeeecccccchh--hcccccccccC-CCcEEEeecCC-Ccc--eeecCCCCccCCCCC
Q 003192 642 KLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKN--VLNELDAEGFL-QLKHLHVQNSP-YIL--CIVDSVEGVACDAFP 715 (840)
Q Consensus 642 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~~~l~-~L~~L~l~~~~-~l~--~l~~~~~~~~~~~~~ 715 (840)
........+++|+.|++++|..++. ++..+ ..++ +|++|++++|. .+. .++ .....++
T Consensus 159 ---------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~~L~~L~l~~~~~~~~~~~l~-----~~~~~~~ 222 (336)
T 2ast_B 159 ---------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQLNLSGYRKNLQKSDLS-----TLVRRCP 222 (336)
T ss_dssp ---------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCEEECCSCGGGSCHHHHH-----HHHHHCT
T ss_pred ---------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--HhcccCCCEEEeCCCcccCCHHHHH-----HHHhhCC
Confidence 0112234467777777777633332 23333 5667 77777777764 221 111 0223567
Q ss_pred ccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhhccccccccccc
Q 003192 716 LLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVILGTEEERISSN 795 (840)
Q Consensus 716 ~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 795 (840)
+|+.|++++|..++... +.....+++|++|++++|..+..... ..+..+++|++|++++| +.. . .+
T Consensus 223 ~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~--i~~---~------~~ 288 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI--VPD---G------TL 288 (336)
T ss_dssp TCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS--SCT---T------CH
T ss_pred CCCEEeCCCCCcCCHHH--HHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc--cCH---H------HH
Confidence 77778777766444321 22345678888888888764433211 13566788888888877 211 1 11
Q ss_pred hhh-cccccccccccccccccccCcc
Q 003192 796 QEI-ELITPRGIQKCSLTAEAATNEI 820 (840)
Q Consensus 796 ~~l-~~L~~L~l~~c~~l~~~~~~l~ 820 (840)
..+ ..++.|++++|...+..|....
T Consensus 289 ~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 289 QLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp HHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHhhCcceEEecccCccccCCccc
Confidence 233 3467777777776666665543
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=6.7e-15 Score=155.20 Aligned_cols=171 Identities=20% Similarity=0.264 Sum_probs=147.1
Q ss_pred ccccccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCc
Q 003192 434 LDKDTLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLR 513 (840)
Q Consensus 434 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~ 513 (840)
+....+++++.|++++|.+..++....+++|++|++++|.+.. ++ .+.++++|++|++++|.+..+|. +..+++|+
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 132 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-VS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ 132 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-CG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred hhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC-ch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence 3445678999999999999988885599999999999998753 44 38899999999999999999876 89999999
Q ss_pred EEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcC
Q 003192 514 TLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHL 593 (840)
Q Consensus 514 ~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l 593 (840)
+|++++|.++.++.++.+++|++|++++|.++.+|. +..+++|++|++++| .+..+|. +..+
T Consensus 133 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~----------------l~~l 194 (308)
T 1h6u_A 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP----------------LASL 194 (308)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG----------------GGGC
T ss_pred EEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh----------------hcCC
Confidence 999999999998779999999999999999999887 999999999999995 5666654 6788
Q ss_pred CCCCeEEEEeecCccCCCccccccCcEEEEEEc
Q 003192 594 SRLTTLEIHIQGAKILPRGLFSKKLERYKILIG 626 (840)
Q Consensus 594 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 626 (840)
++|+.|++++|.+..++....+++|+.|++..+
T Consensus 195 ~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 195 PNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp TTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred CCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 999999999999988876446677777777644
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=3.7e-15 Score=152.27 Aligned_cols=168 Identities=25% Similarity=0.389 Sum_probs=129.8
Q ss_pred ccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEec
Q 003192 440 KFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLD 518 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~ 518 (840)
...++++.+++.+..+|..+. ++++.|++++|.+.. ++...|.++++|++|++++|.+..++. .+..+++|++|+|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 345678888888888887654 688899998888754 444458889999999999998887654 57888999999999
Q ss_pred CcccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCC
Q 003192 519 QSVLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSR 595 (840)
Q Consensus 519 ~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~ 595 (840)
+|.++.+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++| .++.+|+. .++.+++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~--------------~~~~l~~ 156 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAG--------------AFDKLTN 156 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------------TTTTCTT
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHH--------------HcCcCcC
Confidence 9998873 4578889999999999998888765 578899999999884 66666652 2567888
Q ss_pred CCeEEEEeecCccCCCcc--ccccCcEEEEE
Q 003192 596 LTTLEIHIQGAKILPRGL--FSKKLERYKIL 624 (840)
Q Consensus 596 L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 624 (840)
|+.|++++|.+..++... .+++|+.|++.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 999999998888777643 44555555543
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=2.6e-15 Score=161.64 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=117.8
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCC-CCch-hhhcccCCcE-EEecC
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLL-SLPS-SLHLLVNLRT-LCLDQ 519 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~-~i~~L~~L~~-L~L~~ 519 (840)
+.++-+++++.++|..+ .+++++|++++|.+. .+|...|.++++|++|+|++|.+. .+|. .|.++++|+. +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 35666677888888765 368899999998874 677777899999999999999875 4554 6788888765 56667
Q ss_pred cccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcC-CC
Q 003192 520 SVLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHL-SR 595 (840)
Q Consensus 520 ~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l-~~ 595 (840)
|.++.+ ..++.+++|++|++++|.++.+|.. +....++..|++.+++.+..+|... +..+ ..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~--------------f~~~~~~ 155 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS--------------FVGLSFE 155 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS--------------STTSBSS
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc--------------hhhcchh
Confidence 778773 5588999999999999999877653 4566778888888878888877632 3333 35
Q ss_pred CCeEEEEeecCccCCCcc
Q 003192 596 LTTLEIHIQGAKILPRGL 613 (840)
Q Consensus 596 L~~L~l~~~~~~~~~~~~ 613 (840)
++.|++++|.++.++...
T Consensus 156 l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp CEEEECCSSCCCEECTTS
T ss_pred hhhhccccccccCCChhh
Confidence 788899988888777653
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=157.70 Aligned_cols=104 Identities=18% Similarity=0.123 Sum_probs=52.4
Q ss_pred CCCceEEEecCCCCCCCCChhhh-cCCCceeEEEecCCcCCCC-c----hhhhcccCCcEEEecCcccCC--cccccCCC
Q 003192 461 CPQLKFFYMYPKDPALKIPDKFF-AGMIELRVLDLTKMHLLSL-P----SSLHLLVNLRTLCLDQSVLGD--IAVIGELK 532 (840)
Q Consensus 461 ~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~l-p----~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~ 532 (840)
+++|++|++++|.+....|..++ .++++|++|++++|.+... | ..+..+++|++|++++|.+.. +..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 34455555555555444444422 5555555555555555531 2 223345555555555555544 23455555
Q ss_pred CCCEEeccCCCCCC---CcHH--HhccCCCCEEecCC
Q 003192 533 QLEILSLSSSDIEH---LPRE--IGRLSKLRLLDLTN 564 (840)
Q Consensus 533 ~L~~L~L~~~~l~~---lp~~--i~~L~~L~~L~l~~ 564 (840)
+|++|++++|.+.. ++.. ++.+++|++|++++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 55555555555432 2211 24555555555555
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=1.7e-14 Score=147.46 Aligned_cols=156 Identities=21% Similarity=0.358 Sum_probs=134.0
Q ss_pred ccccccEEeecccCCCCCCCc-C-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcE
Q 003192 438 TLKFCTAISLHKCDVNELPEE-L-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRT 514 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~ 514 (840)
....++.|++++|.+..++.. + ++++|++|++++|.+.. ++...|.++++|++|++++|.+..+|. .+..+++|++
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence 456899999999999887754 3 89999999999998864 555568999999999999999998875 6789999999
Q ss_pred EEecCcccCCcc--cccCCCCCCEEeccCCCCCCCcH-HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhh
Q 003192 515 LCLDQSVLGDIA--VIGELKQLEILSLSSSDIEHLPR-EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELK 591 (840)
Q Consensus 515 L~L~~~~l~~~~--~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~ 591 (840)
|+|++|.++.++ .++++++|++|+|++|.++.+|. .++.+++|++|++++| .+..+|+. .+.
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~--------------~~~ 176 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHG--------------AFD 176 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT--------------TTT
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHH--------------HHh
Confidence 999999998843 37899999999999999999887 5889999999999994 66676652 367
Q ss_pred cCCCCCeEEEEeecCccC
Q 003192 592 HLSRLTTLEIHIQGAKIL 609 (840)
Q Consensus 592 ~l~~L~~L~l~~~~~~~~ 609 (840)
.+++|+.|++++|.+...
T Consensus 177 ~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 177 RLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSCCBCTT
T ss_pred CCCCCCEEEeeCCceeCC
Confidence 889999999999987654
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.1e-14 Score=142.69 Aligned_cols=150 Identities=18% Similarity=0.205 Sum_probs=124.7
Q ss_pred cccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCC-CchhhhcccCCcEE
Q 003192 437 DTLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLS-LPSSLHLLVNLRTL 515 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~L~~L~~L 515 (840)
..+++++.|++++|.+..+|....+++|++|++++|.+. .++ .+..+++|++|++++|.+.. .|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 345789999999999998885458999999999999553 333 48899999999999999985 67889999999999
Q ss_pred EecCcccCC--cccccCCCCCCEEeccCCC-CCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhc
Q 003192 516 CLDQSVLGD--IAVIGELKQLEILSLSSSD-IEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKH 592 (840)
Q Consensus 516 ~L~~~~l~~--~~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~ 592 (840)
++++|.++. +..++.+++|++|++++|. ++.+| .+..+++|++|++++| .+..+|. +..
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~----------------l~~ 179 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG----------------IED 179 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT----------------GGG
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH----------------hcc
Confidence 999999987 6779999999999999997 88888 5899999999999985 4555542 678
Q ss_pred CCCCCeEEEEeecCc
Q 003192 593 LSRLTTLEIHIQGAK 607 (840)
Q Consensus 593 l~~L~~L~l~~~~~~ 607 (840)
+++|+.|++++|.+.
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 899999999988765
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=9.9e-15 Score=167.26 Aligned_cols=165 Identities=24% Similarity=0.297 Sum_probs=109.0
Q ss_pred ccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEe
Q 003192 438 TLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCL 517 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L 517 (840)
.+..++.|++++|.+..++....+++|+.|+|++|.+.. +++ +..+++|+.|+|++|.+..+| .+..+++|++|+|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 345677777777777776654477777777777776643 332 667777777777777777655 5677777777777
Q ss_pred cCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCC
Q 003192 518 DQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT 597 (840)
Q Consensus 518 ~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~ 597 (840)
++|.+..++.++.|++|+.|+|++|.++.+ ..+..+++|++|+|++| .+..+++ +..+++|+
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~----------------l~~l~~L~ 178 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP----------------LAGLTKLQ 178 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG----------------GTTCTTCC
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh----------------hccCCCCC
Confidence 777777776777777777777777777766 34677777777777774 3444432 44566666
Q ss_pred eEEEEeecCccCCCccccccCcEEEEE
Q 003192 598 TLEIHIQGAKILPRGLFSKKLERYKIL 624 (840)
Q Consensus 598 ~L~l~~~~~~~~~~~~~~~~L~~L~l~ 624 (840)
.|+|++|.+..++....+.+|+.|++.
T Consensus 179 ~L~Ls~N~i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 179 NLYLSKNHISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp EEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred EEECcCCCCCCChHHccCCCCCEEEcc
Confidence 666666666665543355555555553
No 99
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.56 E-value=1.8e-13 Score=147.50 Aligned_cols=291 Identities=15% Similarity=0.145 Sum_probs=168.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc------cHHHHHH
Q 003192 81 KGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP------DIKKMQG 154 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~ 154 (840)
..+..|+||+++++++.+++..+ ++|.|+|++|+|||||++++++.. + .+|+++.... +...+..
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 44567999999999999988754 799999999999999999998764 1 6788765432 4566666
Q ss_pred HHHHHhCCC---------------cc----ccChhhHHHHHHHHHHcCCcEEEEEcccccccC---------ccccCCcc
Q 003192 155 QIADELGLF---------------LC----EESESGRARRLYARMKEEKKILVILDDIWARLD---------LETLGIPL 206 (840)
Q Consensus 155 ~i~~~l~~~---------------~~----~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~~l 206 (840)
.+.+.+... .. ..........+.+.....++++||+||++.... +..+....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 666655420 00 011111222222222222389999999987543 11121111
Q ss_pred CCCCCCcEEEEeeCCcchhhc---------c-c-CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHc
Q 003192 207 GDEHKGCKVLLTSRSRGVLSR---------E-M-DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKEC 275 (840)
Q Consensus 207 ~~~~~gs~iliTtR~~~v~~~---------~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~ 275 (840)
....+.++|+|++...+... . . .....+++.+|+.+++.+++...+...+. ....+.+..|++.+
T Consensus 160 -~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~~~~~~~~i~~~t 235 (350)
T 2qen_A 160 -DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DVPENEIEEAVELL 235 (350)
T ss_dssp -HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHH
T ss_pred -HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHh
Confidence 11246789999887542110 0 1 11237899999999999999875322111 12346788999999
Q ss_pred CCChHHHHHHHHHHhc-cCHHHHHH-HHHHhcCCCCCCCcchhhhhhhhhhccccCCCchhhHHHHHHhhccCCcCCCCH
Q 003192 276 AGLPIAIVTIAKALRE-ENLFEWKN-ALLELKRPSWRNFSGVQAAACSTIELSFNFLTGEDLKSTLLLCSLMGYTYHASM 353 (840)
Q Consensus 276 ~G~Plai~~~~~~l~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~ 353 (840)
+|+|+++..++..+.. .+...+.. ..+.... .....+. .+.+ + ++. .+..+..+|. . ....
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~---~l~~-~-~~~-~~~~l~~la~-g---~~~~ 298 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG-------LIMGELE---ELRR-R-SPR-YVDILRAIAL-G---YNRW 298 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHH---HHHH-H-CHH-HHHHHHHHHT-T---CCSH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHHHHHHHHHH-------HHHHHHH---HHHh-C-Chh-HHHHHHHHHh-C---CCCH
Confidence 9999999999876532 23322211 1111000 0011111 1112 2 454 6888888886 2 2344
Q ss_pred HHHHHHHh-hcccccccccHHHHHHhHHHHHHHhhhcccccccccCCcEEe-chHHHHHH
Q 003192 354 LDLLKYGM-GMGLFKDVNTMEEARDRACPLVHKLKACSLLLDSHISEMFAM-HDIVRDVA 411 (840)
Q Consensus 354 ~~li~~wi-aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~m-Hdlv~~~~ 411 (840)
..+....- +.| + .. ......+++.|.+.+++... .+.|++ |.+++++.
T Consensus 299 ~~l~~~~~~~~~---~-~~----~~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 299 SLIRDYLAVKGT---K-IP----EPRLYALLENLKKMNWIVEE--DNTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHHHHTTC---C-CC----HHHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHH
T ss_pred HHHHHHHHHHhC---C-CC----HHHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHH
Confidence 44443321 111 0 01 12344678889999999764 245665 56667654
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=4e-16 Score=170.70 Aligned_cols=270 Identities=14% Similarity=0.102 Sum_probs=138.2
Q ss_pred CCCCCCcC-CCCCceEEEecCCCCCCCCChh---hhcCCCceeEEEecCCcCCC----Cchhh-------hcccCCcEEE
Q 003192 452 VNELPEEL-ECPQLKFFYMYPKDPALKIPDK---FFAGMIELRVLDLTKMHLLS----LPSSL-------HLLVNLRTLC 516 (840)
Q Consensus 452 ~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~----lp~~i-------~~L~~L~~L~ 516 (840)
+..++..+ .+++|++|++++|.+....+.. .+.++++|++|+|++|.+.. +|..+ ..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 33444444 5677777777777654332211 25567777777777765542 34333 5667777777
Q ss_pred ecCcccCC------cccccCCCCCCEEeccCCCCCC-----CcHHHhcc---------CCCCEEecCCCCCC-ccccccc
Q 003192 517 LDQSVLGD------IAVIGELKQLEILSLSSSDIEH-----LPREIGRL---------SKLRLLDLTNCSKL-KSIPPNV 575 (840)
Q Consensus 517 L~~~~l~~------~~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L---------~~L~~L~l~~c~~l-~~lp~~l 575 (840)
|++|.++. +..+..+++|++|+|++|.++. ++..+..+ ++|++|++++|..- ..+|.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-- 178 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE-- 178 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH--
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH--
Confidence 77777655 2346667777777777776652 23333344 67777777764321 11221
Q ss_pred cccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhH
Q 003192 576 ERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGT 655 (840)
Q Consensus 576 ~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~ 655 (840)
....+..+++|++|++++|.+.... .....+..
T Consensus 179 ----------l~~~l~~~~~L~~L~L~~n~l~~~g-------------------------------------~~~l~~~~ 211 (386)
T 2ca6_A 179 ----------WAKTFQSHRLLHTVKMVQNGIRPEG-------------------------------------IEHLLLEG 211 (386)
T ss_dssp ----------HHHHHHHCTTCCEEECCSSCCCHHH-------------------------------------HHHHHHTT
T ss_pred ----------HHHHHHhCCCcCEEECcCCCCCHhH-------------------------------------HHHHHHHH
Confidence 0123456667777777666543100 00001111
Q ss_pred HHhhcccceeeecccccc----hhhcccccccccCCCcEEEeecCCCcceeecCC-CCccCCCCCccceecccccccccc
Q 003192 656 IMQLKGIEDLYLGELQDV----KNVLNELDAEGFLQLKHLHVQNSPYILCIVDSV-EGVACDAFPLLESLFLHNLTNLEK 730 (840)
Q Consensus 656 ~~~l~~L~~L~l~~~~~~----~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~~~~~~L~~L~l~~~~~l~~ 730 (840)
+..+++|+.|+|++|... ..++..+ ..+++|++|+|++|..-..-.... ..+..+.+++|+.|++++|. +..
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l--~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~ 288 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIAL--KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IEL 288 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHG--GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBH
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHH--ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCH
Confidence 233566777777666542 3344444 556777777777765211100000 00011235666777776643 332
Q ss_pred -----ccccccCc-ccCCCCCEEEEecCCCCccccc--HHHhhhcccCcEEEEcc
Q 003192 731 -----ICNGRLTA-ASFCNLGIIKVGNCNKLKSILS--VSIARGLQQLQVIDVTE 777 (840)
Q Consensus 731 -----i~~~~~~~-~~l~~L~~L~l~~C~~L~~l~~--~~~~~~l~~L~~L~l~~ 777 (840)
+ +... ..+++|+.|++++|+ ++...+ ......+++++.+++..
T Consensus 289 ~g~~~l---~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 289 DAVRTL---KTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHH---HHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHH---HHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhh
Confidence 3 1112 346777777777753 554432 23334455555555543
No 101
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=1.2e-13 Score=152.44 Aligned_cols=306 Identities=14% Similarity=0.048 Sum_probs=177.1
Q ss_pred cccccchHHHHHHHHHHh-C----C--CCccEEEE--EcCCCCcHHHHHHHHHHHhhcc---CCCC-cEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNAL-S----N--PSVDMIGI--CGMGGIGKTMLVKEIARQVKGH---KLFD-EVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~ 149 (840)
+..|+||+++++++.+++ . . .....+.| +|++|+||||||+.+++..... ..|+ .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 356999999999999988 3 2 23456666 9999999999999999876542 1133 3578887677788
Q ss_pred HHHHHHHHHHhCCCccc--cChhhHHHHHHHHHH-cCCcEEEEEcccccccC--------ccccCCccCC-C--C--CCc
Q 003192 150 KKMQGQIADELGLFLCE--ESESGRARRLYARMK-EEKKILVILDDIWARLD--------LETLGIPLGD-E--H--KGC 213 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~--------~~~l~~~l~~-~--~--~gs 213 (840)
..+...++.+++..... .+.......+.+.+. .+++++||+||++.... +..+...+.. . + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998765331 112233444444443 35789999999987432 2222111211 1 2 345
Q ss_pred EEEEeeCCcchhhcc--------cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcC------CCh
Q 003192 214 KVLLTSRSRGVLSRE--------MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECA------GLP 279 (840)
Q Consensus 214 ~iliTtR~~~v~~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~------G~P 279 (840)
.||+||+...+.... ......+.+.+++.++++++|...+..... ...-..+....|++.++ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCcH
Confidence 588788765432100 001123899999999999999876421111 11223567889999999 999
Q ss_pred HHHHHHHHHHh------cc---CHHHHHHHHHHhcCCCCCCCcchhhhhhhhhhccccCCCchhhHHHHHHhhccC--Cc
Q 003192 280 IAIVTIAKALR------EE---NLFEWKNALLELKRPSWRNFSGVQAAACSTIELSFNFLTGEDLKSTLLLCSLMG--YT 348 (840)
Q Consensus 280 lai~~~~~~l~------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp--~~ 348 (840)
..+..+..... +. +...+..++..... ...+.-.+..||+. .+.++..+|.+. .+
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCC
Confidence 76655543321 11 23333333332110 22344567889987 688887777653 22
Q ss_pred CCCCHHHHHHHHh--h-cccccccccHHHHHHhHHHHHHHhhhccccccc----ccCCcEEechHH
Q 003192 349 YHASMLDLLKYGM--G-MGLFKDVNTMEEARDRACPLVHKLKACSLLLDS----HISEMFAMHDIV 407 (840)
Q Consensus 349 ~~~~~~~li~~wi--a-eg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----~~~~~~~mHdlv 407 (840)
..+...++...+. + .-+-..... ......+++.|.+.+++... +..+.|++|++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNVKPRG----YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCCCCCC----HHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 3455655554432 1 111000001 12344578889999999643 123445555443
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=2.7e-14 Score=143.43 Aligned_cols=150 Identities=26% Similarity=0.350 Sum_probs=129.2
Q ss_pred ccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCc
Q 003192 442 CTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQS 520 (840)
Q Consensus 442 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~ 520 (840)
.+.++.+++.+..+|..+. ++|++|++++|.+....+ ..|.++++|++|+|++|.+..+|. .+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4578888888999987654 899999999999865444 458999999999999999999886 5789999999999999
Q ss_pred ccCCcc--cccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCe
Q 003192 521 VLGDIA--VIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 521 ~l~~~~--~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
.++.++ .++.+++|++|++++|.++.+|..+..+++|++|++++ +.+..+|.. .+..+++|+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~--------------~~~~l~~L~~ 163 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHG--------------AFDRLSSLTH 163 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTT--------------TTTTCTTCCE
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHH--------------HHhCCCCCCE
Confidence 998843 37899999999999999999999999999999999999 567777753 2678899999
Q ss_pred EEEEeecCcc
Q 003192 599 LEIHIQGAKI 608 (840)
Q Consensus 599 L~l~~~~~~~ 608 (840)
|++++|.+..
T Consensus 164 L~l~~N~~~c 173 (229)
T 3e6j_A 164 AYLFGNPWDC 173 (229)
T ss_dssp EECTTSCBCT
T ss_pred EEeeCCCccC
Confidence 9999887653
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=6.3e-14 Score=146.29 Aligned_cols=156 Identities=21% Similarity=0.304 Sum_probs=137.1
Q ss_pred ccccccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCc
Q 003192 434 LDKDTLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLR 513 (840)
Q Consensus 434 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~ 513 (840)
+....+++++.|++++|.+..++....+++|++|++++|.+.. ++. +..+++|++|++++|.+..++ .+..+++|+
T Consensus 62 ~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~ 137 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LSS--LKDLKKLKSLSLEHNGISDIN-GLVHLPQLE 137 (291)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GGG--GTTCTTCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Chh--hccCCCCCEEECCCCcCCCCh-hhcCCCCCC
Confidence 3445578999999999999988875599999999999998754 443 899999999999999999874 689999999
Q ss_pred EEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcC
Q 003192 514 TLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHL 593 (840)
Q Consensus 514 ~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l 593 (840)
+|++++|.++.++.++.+++|++|++++|.++.++. +..+++|++|++++| .++.+|. +..+
T Consensus 138 ~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~----------------l~~l 199 (291)
T 1h6t_A 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRA----------------LAGL 199 (291)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG----------------GTTC
T ss_pred EEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCC-cCCCChh----------------hccC
Confidence 999999999999899999999999999999999887 999999999999995 5666653 6789
Q ss_pred CCCCeEEEEeecCccCCC
Q 003192 594 SRLTTLEIHIQGAKILPR 611 (840)
Q Consensus 594 ~~L~~L~l~~~~~~~~~~ 611 (840)
++|+.|++++|.+...|.
T Consensus 200 ~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 200 KNLDVLELFSQECLNKPI 217 (291)
T ss_dssp TTCSEEEEEEEEEECCCE
T ss_pred CCCCEEECcCCcccCCcc
Confidence 999999999998877554
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=3.2e-14 Score=161.14 Aligned_cols=190 Identities=20% Similarity=0.272 Sum_probs=141.1
Q ss_pred cccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCc
Q 003192 441 FCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQS 520 (840)
Q Consensus 441 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~ 520 (840)
+++.|++++|.+..+|..+ +++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +.. +|++|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 6889999999998888765 488999999999886 677 357899999999999999988 665 9999999999
Q ss_pred ccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEE
Q 003192 521 VLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLE 600 (840)
Q Consensus 521 ~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~ 600 (840)
.++.++. .+++|++|++++|.++.+|. .+++|++|++++| .++.+|. + . ++|+.|+
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l---------------~--~~L~~L~ 186 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE-L---------------P--ESLEALD 186 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC-C---------------C--TTCCEEE
T ss_pred cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch-h---------------h--CCCCEEE
Confidence 9988666 78999999999999999987 6889999999995 5666775 3 2 7899999
Q ss_pred EEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhccc
Q 003192 601 IHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNE 679 (840)
Q Consensus 601 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 679 (840)
+++|.++.+|. +. .+| ......++.|+|..|....+|.++.. +++|+.|++++|...+..+..
T Consensus 187 Ls~N~L~~lp~-~~-~~L-------------~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 187 VSTNLLESLPA-VP-VRN-------------HHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCSSCCSSCCC-CC----------------------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCHHHHHH
T ss_pred CcCCCCCchhh-HH-Hhh-------------hcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCCcCHHH
Confidence 99999998886 31 122 00111123444444444455554444 666666666666554444443
No 105
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=4.3e-13 Score=144.93 Aligned_cols=290 Identities=13% Similarity=0.145 Sum_probs=167.3
Q ss_pred CCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC-----ccHHHHHHH
Q 003192 81 KGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI-----PDIKKMQGQ 155 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~ 155 (840)
..+..|+||+++++.+.+ +.. ++|.|+|++|+|||||++.+++.... ..+|+++... .+...+...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHH
Confidence 345679999999999999 765 69999999999999999999987642 2588887642 344445444
Q ss_pred HHHHhC--------------C----Cccc---c-C----hhhHHHHHHHHHHcC--CcEEEEEccccccc-----Ccccc
Q 003192 156 IADELG--------------L----FLCE---E-S----ESGRARRLYARMKEE--KKILVILDDIWARL-----DLETL 202 (840)
Q Consensus 156 i~~~l~--------------~----~~~~---~-~----~~~~~~~l~~~l~~~--k~~LlVlDdv~~~~-----~~~~l 202 (840)
+.+.+. . .... . . .......+.+.+.+. ++++||+||++... ++..+
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 444331 0 0000 0 0 011234445555431 38999999997642 22111
Q ss_pred CCccCCCCCCcEEEEeeCCcchhhc---------cc-Cc-cceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 003192 203 GIPLGDEHKGCKVLLTSRSRGVLSR---------EM-DS-EINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAI 271 (840)
Q Consensus 203 ~~~l~~~~~gs~iliTtR~~~v~~~---------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i 271 (840)
...+.....+.++|+|+|....... .. +. ...+.+.+|+.+++.+++...+...+... .. ...|
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~~~i 235 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----YEVV 235 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----HHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----HHHH
Confidence 1111112246789999997643110 01 11 25789999999999999987532111111 11 1789
Q ss_pred HHHcCCChHHHHHHHHHHhc-cCHHHHHHH-HHHhcCCCCCCCcchhhhhhhhhh-ccc--cCCCchhhHHHHHHhhccC
Q 003192 272 AKECAGLPIAIVTIAKALRE-ENLFEWKNA-LLELKRPSWRNFSGVQAAACSTIE-LSF--NFLTGEDLKSTLLLCSLMG 346 (840)
Q Consensus 272 ~~~~~G~Plai~~~~~~l~~-~~~~~w~~~-l~~l~~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~~k~cfl~~a~fp 346 (840)
++.|+|+|+++..++..+.. .+...|... .+.. ...+...+. +.+ ..+++. .+..+..+|. .
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~-g 302 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLSK-C 302 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT-C
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHHc-C
Confidence 99999999999999887653 233334221 1110 011111111 111 156666 6888888887 2
Q ss_pred CcCCCCHHHHHHHHh-hcccccccccHHHHHHhHHHHHHHhhhcccccccccCCcEE-echHHHHH
Q 003192 347 YTYHASMLDLLKYGM-GMGLFKDVNTMEEARDRACPLVHKLKACSLLLDSHISEMFA-MHDIVRDV 410 (840)
Q Consensus 347 ~~~~~~~~~li~~wi-aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-mHdlv~~~ 410 (840)
. +...+....- ..|. . .. ......+++.|.+.+++...+ +.|+ -|++++++
T Consensus 303 --~--~~~~l~~~~~~~~g~--~-~~----~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 --G--KWSDVKRALELEEGI--E-IS----DSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp --B--CHHHHHHHHHHHHCS--C-CC----HHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHH
T ss_pred --C--CHHHHHHHHHHhcCC--C-CC----HHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHh
Confidence 2 3444332110 1120 0 01 123446788899999997652 4566 46777765
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=7.3e-15 Score=155.29 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=62.9
Q ss_pred CCCCceEEEecCCCCCCCCChhh--hcCCCceeEEEecCCcCC-CCchhh--hcccCCcEEEecCcccCCc------ccc
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKF--FAGMIELRVLDLTKMHLL-SLPSSL--HLLVNLRTLCLDQSVLGDI------AVI 528 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~lp~~i--~~L~~L~~L~L~~~~l~~~------~~i 528 (840)
....++.+.+..+.+.......+ +..+++|++|++++|.+. ..|..+ ..+++|++|++++|.++.. ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 33445666665554421100000 123455777777777766 345555 6777777777777776651 223
Q ss_pred cCCCCCCEEeccCCCCCCCc-HHHhccCCCCEEecCCCC
Q 003192 529 GELKQLEILSLSSSDIEHLP-REIGRLSKLRLLDLTNCS 566 (840)
Q Consensus 529 ~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~c~ 566 (840)
..+++|++|++++|.++.+| ..++.+++|++|++++|.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 45777777777777776554 456677777777777754
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=5.1e-14 Score=144.58 Aligned_cols=152 Identities=22% Similarity=0.274 Sum_probs=125.2
Q ss_pred cccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEE
Q 003192 437 DTLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLC 516 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 516 (840)
..+++++.|++++|.+..++....+++|++|++++|.+. .++. +.++++|++|++++|.++.+|.... ++|++|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 345788999999999988885458899999999998875 3444 7899999999999999988876433 8899999
Q ss_pred ecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCC
Q 003192 517 LDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRL 596 (840)
Q Consensus 517 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L 596 (840)
+++|.++.++.++.+++|++|++++|.++.+| .++.+++|++|++++| .+..++ .+..+++|
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~----------------~l~~l~~L 174 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTG----------------GLTRLKKV 174 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCT----------------TSTTCCCC
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchH----------------HhccCCCC
Confidence 99999988888999999999999999999887 5889999999999985 454442 26778899
Q ss_pred CeEEEEeecCccCCC
Q 003192 597 TTLEIHIQGAKILPR 611 (840)
Q Consensus 597 ~~L~l~~~~~~~~~~ 611 (840)
+.|++++|.+...|.
T Consensus 175 ~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 175 NWIDLTGQKCVNEPV 189 (263)
T ss_dssp CEEEEEEEEEECCCE
T ss_pred CEEeCCCCcccCCcc
Confidence 999999988876653
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.4e-14 Score=140.23 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=127.3
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCC--cccccCCCCCCEE
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGD--IAVIGELKQLEIL 537 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L 537 (840)
.+++|++|++++|.+. .+| . +..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 6789999999999885 666 3 889999999999999877665 78999999999999999986 7889999999999
Q ss_pred eccCCCCCC-CcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccc
Q 003192 538 SLSSSDIEH-LPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSK 616 (840)
Q Consensus 538 ~L~~~~l~~-lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 616 (840)
++++|.++. .|..++.+++|++|++++|..++.+|. +..+++|+.|++++|.+..++....++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~----------------l~~l~~L~~L~l~~n~i~~~~~l~~l~ 181 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP----------------LKTLPELKSLNIQFDGVHDYRGIEDFP 181 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG----------------GGGCSSCCEEECTTBCCCCCTTGGGCS
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh----------------hcCCCCCCEEECCCCCCcChHHhccCC
Confidence 999999994 788899999999999999765777763 678999999999999999888544777
Q ss_pred cCcEEEEEEc
Q 003192 617 KLERYKILIG 626 (840)
Q Consensus 617 ~L~~L~l~~~ 626 (840)
+|+.|++..+
T Consensus 182 ~L~~L~l~~N 191 (197)
T 4ezg_A 182 KLNQLYAFSQ 191 (197)
T ss_dssp SCCEEEECBC
T ss_pred CCCEEEeeCc
Confidence 8888877543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=1.3e-14 Score=149.13 Aligned_cols=166 Identities=22% Similarity=0.217 Sum_probs=140.3
Q ss_pred ccccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEe
Q 003192 438 TLKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCL 517 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L 517 (840)
.+.++..+.+..+.+..++....+++|++|++++|.+. .++ .+..+++|++|++++|.+..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 45667788888888888875458999999999999875 555 37899999999999999999988 999999999999
Q ss_pred cCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCC
Q 003192 518 DQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT 597 (840)
Q Consensus 518 ~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~ 597 (840)
++|.++.++.+.. ++|++|++++|.++.+| .+..+++|++|++++| .++.+|. +..+++|+
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~----------------l~~l~~L~ 153 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM----------------LGFLSKLE 153 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG----------------GGGCTTCC
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH----------------HccCCCCC
Confidence 9999999776666 99999999999999987 4999999999999995 5666653 67899999
Q ss_pred eEEEEeecCccCCCccccccCcEEEEEEc
Q 003192 598 TLEIHIQGAKILPRGLFSKKLERYKILIG 626 (840)
Q Consensus 598 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 626 (840)
.|++++|.+..++....+.+|+.|++..+
T Consensus 154 ~L~L~~N~i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 154 VLDLHGNEITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp EEECTTSCCCBCTTSTTCCCCCEEEEEEE
T ss_pred EEECCCCcCcchHHhccCCCCCEEeCCCC
Confidence 99999999988844436677777777544
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=142.73 Aligned_cols=149 Identities=17% Similarity=0.292 Sum_probs=125.6
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCcc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~ 521 (840)
+.++++++.+..+|..+ .+.++.|++++|.+....+...|.++++|++|++++|.++.+|. .|..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 58899999999888755 34678999999998765566678999999999999999998765 89999999999999999
Q ss_pred cCCc--ccccCCCCCCEEeccCCCCCCC-cHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCe
Q 003192 522 LGDI--AVIGELKQLEILSLSSSDIEHL-PREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 522 l~~~--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
++.+ ..++++++|++|+|++|.++.+ |..+..+++|++|++++| .++.+++ ..+..+++|+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~--------------~~~~~l~~L~~ 157 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAP--------------GAFDTLHSLST 157 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCT--------------TTTTTCTTCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECH--------------HHhcCCCCCCE
Confidence 9884 4489999999999999999977 667899999999999994 5666643 23677899999
Q ss_pred EEEEeecCc
Q 003192 599 LEIHIQGAK 607 (840)
Q Consensus 599 L~l~~~~~~ 607 (840)
|++++|.+.
T Consensus 158 L~L~~N~l~ 166 (220)
T 2v70_A 158 LNLLANPFN 166 (220)
T ss_dssp EECCSCCEE
T ss_pred EEecCcCCc
Confidence 999988765
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=3.4e-14 Score=141.67 Aligned_cols=148 Identities=22% Similarity=0.333 Sum_probs=122.9
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEEEecCcc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 521 (840)
+.++.+++.+..+|..+. ++|+.|++++|.+. .++...|.++++|++|+|++|.+..+ |..|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567888888888887654 78999999999885 45555688999999999999999976 7789999999999999999
Q ss_pred cCCcc--cccCCCCCCEEeccCCCCCCC-cHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCe
Q 003192 522 LGDIA--VIGELKQLEILSLSSSDIEHL-PREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 522 l~~~~--~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
++.++ .+.++++|++|+|++|.++.+ |..+..+++|++|++++ +.+..+|.. .+..+++|+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~--------------~~~~l~~L~~ 156 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKG--------------TFSPLRAIQT 156 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT--------------TTTTCTTCCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHH--------------HHhCCCCCCE
Confidence 98843 378899999999999999977 55688999999999999 466666653 2567889999
Q ss_pred EEEEeecCc
Q 003192 599 LEIHIQGAK 607 (840)
Q Consensus 599 L~l~~~~~~ 607 (840)
|++++|.+.
T Consensus 157 L~L~~N~~~ 165 (220)
T 2v9t_B 157 MHLAQNPFI 165 (220)
T ss_dssp EECCSSCEE
T ss_pred EEeCCCCcC
Confidence 999888754
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=6.3e-14 Score=138.66 Aligned_cols=147 Identities=25% Similarity=0.383 Sum_probs=111.7
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCcc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~ 521 (840)
+.++.+++.+..+|... .++|++|++++|.+. .++...|.++++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45666677777777544 468888888888875 5666667888899999999988888776 46788889999999888
Q ss_pred cCCcc--cccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCe
Q 003192 522 LGDIA--VIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 522 l~~~~--~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
++.++ .++++++|++|++++|.++.+|.. +.++++|++|++++| .+..+|... +..+++|+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~--------------~~~l~~L~~ 152 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGV--------------FDRLTSLQY 152 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT--------------TTTCTTCCE
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHH--------------hccCCCccE
Confidence 87742 378888899999988888877765 578888888888884 556665532 566778888
Q ss_pred EEEEeecC
Q 003192 599 LEIHIQGA 606 (840)
Q Consensus 599 L~l~~~~~ 606 (840)
|++++|.+
T Consensus 153 L~l~~N~~ 160 (208)
T 2o6s_A 153 IWLHDNPW 160 (208)
T ss_dssp EECCSCCB
T ss_pred EEecCCCe
Confidence 88876643
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=8.8e-15 Score=167.70 Aligned_cols=191 Identities=22% Similarity=0.207 Sum_probs=150.6
Q ss_pred cccccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEec
Q 003192 439 LKFCTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLD 518 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 518 (840)
+..+..+.+..+.+..+.....+++|+.|.+++|.+. .++. +..+++|+.|+|++|.+..+|. +..+++|++|+|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 3445555666666655555457899999999999874 4553 7899999999999999999887 9999999999999
Q ss_pred CcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCe
Q 003192 519 QSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTT 598 (840)
Q Consensus 519 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~ 598 (840)
+|.+..++.++.+++|++|+|++|.++.+|. +..+++|+.|+|++| .+..++ .+..+++|+.
T Consensus 96 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N-~l~~l~----------------~l~~l~~L~~ 157 (605)
T 1m9s_A 96 ENKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNN-KITDIT----------------VLSRLTKLDT 157 (605)
T ss_dssp SSCCCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSS-CCCCCG----------------GGGSCTTCSE
T ss_pred CCCCCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCC-ccCCch----------------hhcccCCCCE
Confidence 9999999999999999999999999999864 899999999999995 455443 3788999999
Q ss_pred EEEEeecCccCCCccccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccc
Q 003192 599 LEIHIQGAKILPRGLFSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDV 673 (840)
Q Consensus 599 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 673 (840)
|+|+.|.+..+++...+.+|+.|++..+ ....++ .+..+++|+.|+|++|...
T Consensus 158 L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N--------------------~i~~l~--~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 158 LSLEDNQISDIVPLAGLTKLQNLYLSKN--------------------HISDLR--ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSS--------------------CCCBCG--GGTTCTTCSEEECCSEEEE
T ss_pred EECcCCcCCCchhhccCCCCCEEECcCC--------------------CCCCCh--HHccCCCCCEEEccCCcCc
Confidence 9999999988776436666776666433 222222 2445778888888876544
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=1.1e-14 Score=159.13 Aligned_cols=158 Identities=17% Similarity=0.168 Sum_probs=119.5
Q ss_pred cccccEEeecccCCCC-----CCCcC-CCCCceEEEecCCCC---CCCCChhh------hcCCCceeEEEecCCcCCC--
Q 003192 439 LKFCTAISLHKCDVNE-----LPEEL-ECPQLKFFYMYPKDP---ALKIPDKF------FAGMIELRVLDLTKMHLLS-- 501 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~---~~~~~~~~------~~~l~~L~~L~l~~~~~~~-- 501 (840)
.+++++|++++|.+.. ++..+ .+++|++|++++|.+ ...+|..+ +.++++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4578999999998864 22223 789999999998644 33445443 4789999999999999986
Q ss_pred ---CchhhhcccCCcEEEecCcccCC--cc----cccCC---------CCCCEEeccCCCCC--CCc---HHHhccCCCC
Q 003192 502 ---LPSSLHLLVNLRTLCLDQSVLGD--IA----VIGEL---------KQLEILSLSSSDIE--HLP---REIGRLSKLR 558 (840)
Q Consensus 502 ---lp~~i~~L~~L~~L~L~~~~l~~--~~----~i~~L---------~~L~~L~L~~~~l~--~lp---~~i~~L~~L~ 558 (840)
+|..+..+++|++|+|++|.++. +. .+..+ ++|++|++++|.++ .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 78899999999999999999864 22 24444 89999999999997 455 5678899999
Q ss_pred EEecCCCCCCccccccccccccccccCChh-hhhcCCCCCeEEEEeecCc
Q 003192 559 LLDLTNCSKLKSIPPNVERLNIERSNASLD-ELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 559 ~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~ 607 (840)
+|++++|. ++.. ++. .... .+.++++|+.|++++|.+.
T Consensus 191 ~L~L~~n~-l~~~--g~~--------~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 191 TVKMVQNG-IRPE--GIE--------HLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp EEECCSSC-CCHH--HHH--------HHHHTTGGGCTTCCEEECCSSCCH
T ss_pred EEECcCCC-CCHh--HHH--------HHHHHHhhcCCCccEEECcCCCCC
Confidence 99999963 4310 000 0011 4678899999999988873
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=2e-14 Score=155.59 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=54.1
Q ss_pred EecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-----hhhhccc-CCcEEEecCcccCC--cccccCC-----CCC
Q 003192 468 YMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-----SSLHLLV-NLRTLCLDQSVLGD--IAVIGEL-----KQL 534 (840)
Q Consensus 468 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-----~~i~~L~-~L~~L~L~~~~l~~--~~~i~~L-----~~L 534 (840)
.++.|.+.+.+| .++...++|++|++++|.+...+ ..+..++ +|++|+|++|.++. +..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 344455443333 23444455777777776666544 4555666 66777776666654 3334443 666
Q ss_pred CEEeccCCCCCCCc-HH----Hhcc-CCCCEEecCCC
Q 003192 535 EILSLSSSDIEHLP-RE----IGRL-SKLRLLDLTNC 565 (840)
Q Consensus 535 ~~L~L~~~~l~~lp-~~----i~~L-~~L~~L~l~~c 565 (840)
++|++++|.++..+ .. +..+ ++|++|++++|
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 119 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC
Confidence 67777766666332 22 3333 66667766664
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=2.3e-13 Score=129.51 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=104.2
Q ss_pred cccccEEeecccCCC--CCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCC-CchhhhcccCCcE
Q 003192 439 LKFCTAISLHKCDVN--ELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLS-LPSSLHLLVNLRT 514 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~L~~L~~ 514 (840)
++++++|++++|.+. .+|..+ .+++|++|++++|.+... ..+..+++|++|++++|.+.. +|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 467888999988887 777765 788888888888887543 347888888888888888886 6777777888888
Q ss_pred EEecCcccCCc---ccccCCCCCCEEeccCCCCCCCcH----HHhccCCCCEEecCCCCCCccccc
Q 003192 515 LCLDQSVLGDI---AVIGELKQLEILSLSSSDIEHLPR----EIGRLSKLRLLDLTNCSKLKSIPP 573 (840)
Q Consensus 515 L~L~~~~l~~~---~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~~c~~l~~lp~ 573 (840)
|++++|.++.+ ..++.+++|++|++++|.++.+|. .+..+++|++|++++| ....+|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 88888888773 567888888888888888887776 6788888888888885 4555554
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=2.4e-13 Score=146.84 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=125.6
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhc-CCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFA-GMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQS 520 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~ 520 (840)
+.++.+++.+..+|..+ .+.++.|++++|.+. .++...|. ++++|++|+|++|.+..+|. .|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57888888898888755 346899999999875 45555566 89999999999999998764 7899999999999999
Q ss_pred ccCCc--ccccCCCCCCEEeccCCCCCCC-cHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCC
Q 003192 521 VLGDI--AVIGELKQLEILSLSSSDIEHL-PREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLT 597 (840)
Q Consensus 521 ~l~~~--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~ 597 (840)
.++.+ ..+.++++|++|+|++|.|+.+ |..+..+++|++|+|++ +.+..+|..+. ..+..+++|+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~-----------~~~~~l~~L~ 166 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELI-----------KDGNKLPKLM 166 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGT-----------C----CTTCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHh-----------cCcccCCcCC
Confidence 98884 3588999999999999999976 56788999999999999 56777776431 1125788999
Q ss_pred eEEEEeecCccCCCc
Q 003192 598 TLEIHIQGAKILPRG 612 (840)
Q Consensus 598 ~L~l~~~~~~~~~~~ 612 (840)
.|++++|.+..+|..
T Consensus 167 ~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 167 LLDLSSNKLKKLPLT 181 (361)
T ss_dssp EEECCSSCCCCCCHH
T ss_pred EEECCCCCCCccCHH
Confidence 999999998887743
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=4.1e-13 Score=152.07 Aligned_cols=182 Identities=18% Similarity=0.222 Sum_probs=134.5
Q ss_pred CCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCcccccCCCCCCEEeccC
Q 003192 462 PQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILSLSS 541 (840)
Q Consensus 462 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~ 541 (840)
.+|+.|++++|.+.. +|..+ +++|++|++++|.++.+| ..+++|++|++++|.++.++.+++ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCC
Confidence 489999999998854 77764 378999999999999999 568999999999999988655655 999999999
Q ss_pred CCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCccccccCcEE
Q 003192 542 SDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGLFSKKLERY 621 (840)
Q Consensus 542 ~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L 621 (840)
|.++.+|. .+++|++|++++| .++.+|. .+++|+.|++++|.++.+|. +. .+|+.|
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~------------------~l~~L~~L~Ls~N~L~~lp~-l~-~~L~~L 185 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNN-QLTMLPE------------------LPTSLEVLSVRNNQLTFLPE-LP-ESLEAL 185 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSS-CCSCCCC------------------CCTTCCEEECCSSCCSCCCC-CC-TTCCEE
T ss_pred CcCCCCCC---cCccccEEeCCCC-ccCcCCC------------------cCCCcCEEECCCCCCCCcch-hh-CCCCEE
Confidence 99999997 7899999999994 5666664 35789999999999988887 43 666666
Q ss_pred EEEEcCcCCcCCCCCCccEEEEeecCcccchh---hHHHhhcccceeeecccccchhhcccccccccCCCcEEEeecCCC
Q 003192 622 KILIGDEWDWHGKYETSRTLKLMLNTRTCLEN---GTIMQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPY 698 (840)
Q Consensus 622 ~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 698 (840)
++..+ ....+|. ......+.|+.|++++|... .+|..+ ..+++|+.|+|++|+.
T Consensus 186 ~Ls~N--------------------~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l--~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 186 DVSTN--------------------LLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENI--LSLDPTCTIILEDNPL 242 (571)
T ss_dssp ECCSS--------------------CCSSCCCCC--------CCEEEECCSSCCC-CCCGGG--GGSCTTEEEECCSSSC
T ss_pred ECcCC--------------------CCCchhhHHHhhhcccccceEEecCCCcce-ecCHHH--hcCCCCCEEEeeCCcC
Confidence 55433 2222222 01111233488888876543 456555 4578888888888764
Q ss_pred c
Q 003192 699 I 699 (840)
Q Consensus 699 l 699 (840)
.
T Consensus 243 ~ 243 (571)
T 3cvr_A 243 S 243 (571)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=3.7e-13 Score=125.20 Aligned_cols=123 Identities=20% Similarity=0.210 Sum_probs=104.1
Q ss_pred cccccEEeecccCCC--CCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCC-CchhhhcccCCcE
Q 003192 439 LKFCTAISLHKCDVN--ELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLS-LPSSLHLLVNLRT 514 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~L~~L~~ 514 (840)
.+++++|++++|.+. .+|..+ .+++|++|++++|.+... ..+.++++|++|++++|.+.. +|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 467899999999987 788765 889999999999887544 348889999999999999987 7778888999999
Q ss_pred EEecCcccCCc---ccccCCCCCCEEeccCCCCCCCcH----HHhccCCCCEEecCC
Q 003192 515 LCLDQSVLGDI---AVIGELKQLEILSLSSSDIEHLPR----EIGRLSKLRLLDLTN 564 (840)
Q Consensus 515 L~L~~~~l~~~---~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~~ 564 (840)
|++++|.++.+ ..++.+++|++|++++|.++.+|. .++.+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999998883 678899999999999999887775 688899999998863
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=2.4e-14 Score=154.82 Aligned_cols=67 Identities=10% Similarity=-0.041 Sum_probs=35.1
Q ss_pred hcccceeeecccccchhhcccc--cccccCCCcEEEeecCCCcceeecCC---CCccCCCCCccceecccccc
Q 003192 659 LKGIEDLYLGELQDVKNVLNEL--DAEGFLQLKHLHVQNSPYILCIVDSV---EGVACDAFPLLESLFLHNLT 726 (840)
Q Consensus 659 l~~L~~L~l~~~~~~~~~~~~l--~~~~l~~L~~L~l~~~~~l~~l~~~~---~~~~~~~~~~L~~L~l~~~~ 726 (840)
.++|+.|++++|.........+ ....+++|+.|++++|.. ..+.... .......+++|+.|+++++.
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l-~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH-TTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc-cccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3578888888765432211111 115567888888888751 0010000 00122456778888887743
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=2.1e-13 Score=129.83 Aligned_cols=138 Identities=23% Similarity=0.296 Sum_probs=111.2
Q ss_pred CCCceEEEecCCCCC-CCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCC-ccc-ccCCCCCCEE
Q 003192 461 CPQLKFFYMYPKDPA-LKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGD-IAV-IGELKQLEIL 537 (840)
Q Consensus 461 ~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~-i~~L~~L~~L 537 (840)
.++|++|++++|.+. ..+|.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.++. ++. ++.+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999876 466654 78899999999999999887 778899999999999999887 444 5569999999
Q ss_pred eccCCCCCCCc--HHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCc
Q 003192 538 SLSSSDIEHLP--REIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRG 612 (840)
Q Consensus 538 ~L~~~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 612 (840)
++++|.++.+| ..+..+++|++|++++| .+..+|... ...+..+++|+.|+++.|.+..+|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~-----------~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYR-----------ESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHH-----------HHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHH-----------HHHHHhCccCcEecCCCCChhhcccc
Confidence 99999999876 67889999999999985 455555300 12367889999999999988877754
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=1.2e-12 Score=129.47 Aligned_cols=129 Identities=25% Similarity=0.398 Sum_probs=113.8
Q ss_pred ccccccEEeecccCCCCCCCcC--CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcE
Q 003192 438 TLKFCTAISLHKCDVNELPEEL--ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRT 514 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~ 514 (840)
..+++++|++++|.+..++... .+++|++|++++|.+. .++...|.++++|++|++++|.+..+|. .+..+++|++
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 4568999999999998887753 8999999999999885 6677778999999999999999998876 4789999999
Q ss_pred EEecCcccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCC
Q 003192 515 LCLDQSVLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSK 567 (840)
Q Consensus 515 L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~ 567 (840)
|++++|.++.+ ..++++++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 99999999884 3389999999999999999988775 78899999999999743
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=2.6e-13 Score=146.52 Aligned_cols=155 Identities=26% Similarity=0.360 Sum_probs=129.3
Q ss_pred cccccccEEeecccCCCCCCCcC---CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCC
Q 003192 437 DTLKFCTAISLHKCDVNELPEEL---ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNL 512 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L 512 (840)
.....++.|++++|.+..++... ++++|++|++++|.+. .++...|.++++|++|+|++|.+..+|. .|..+++|
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 34567899999999998877643 7899999999999885 5555568999999999999999998865 68999999
Q ss_pred cEEEecCcccCC--cccccCCCCCCEEeccCCCCCCCcHHH----hccCCCCEEecCCCCCCccccccccccccccccCC
Q 003192 513 RTLCLDQSVLGD--IAVIGELKQLEILSLSSSDIEHLPREI----GRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNAS 586 (840)
Q Consensus 513 ~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~i----~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~ 586 (840)
++|+|++|.++. +..+.++++|++|+|++|.++.+|..+ ..+++|++|+|++ +.+..+|.
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~------------- 180 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPL------------- 180 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCH-------------
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCH-------------
Confidence 999999999987 457999999999999999999999876 6799999999999 56777774
Q ss_pred hhhhhcCCC--CCeEEEEeecCc
Q 003192 587 LDELKHLSR--LTTLEIHIQGAK 607 (840)
Q Consensus 587 ~~~l~~l~~--L~~L~l~~~~~~ 607 (840)
..+..++. |+.|++++|.+.
T Consensus 181 -~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 181 -TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -HHHHHSCHHHHTTEECCSSCEE
T ss_pred -HHhhhccHhhcceEEecCCCcc
Confidence 23556665 478888877654
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=6.9e-13 Score=132.16 Aligned_cols=128 Identities=20% Similarity=0.314 Sum_probs=112.7
Q ss_pred ccccccEEeecccCCCCCCCc-C-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchh-hhcccCCcE
Q 003192 438 TLKFCTAISLHKCDVNELPEE-L-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSS-LHLLVNLRT 514 (840)
Q Consensus 438 ~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~ 514 (840)
..++++.|++++|.+..++.. + .+++|+.|++++|.+....| ..|.++++|++|+|++|.++.+|.. |..+++|++
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 457899999999999888763 3 89999999999999865444 4589999999999999999999875 688999999
Q ss_pred EEecCcccCC--cccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCC
Q 003192 515 LCLDQSVLGD--IAVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCS 566 (840)
Q Consensus 515 L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~ 566 (840)
|+|++|.++. +..++.+++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9999999988 36699999999999999999988764 8889999999999964
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.3e-12 Score=131.15 Aligned_cols=131 Identities=25% Similarity=0.308 Sum_probs=115.4
Q ss_pred cccccccEEeecccCCCCCCC-cC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCc
Q 003192 437 DTLKFCTAISLHKCDVNELPE-EL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLR 513 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~ 513 (840)
....+++.|++++|.+..++. .+ .+++|++|++++|.+ ..++...|.++++|++|+|++|.++.+|. .+..+++|+
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 345789999999999988744 44 899999999999998 57777778999999999999999998876 478999999
Q ss_pred EEEecCcccCC-cccccCCCCCCEEeccCCCCCCCcH-HHhccCCCCEEecCCCCCC
Q 003192 514 TLCLDQSVLGD-IAVIGELKQLEILSLSSSDIEHLPR-EIGRLSKLRLLDLTNCSKL 568 (840)
Q Consensus 514 ~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l 568 (840)
+|+|++|.++. +..+..+++|++|++++|.++.+|. .+..+++|++|++++|...
T Consensus 116 ~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred eEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999999988 5679999999999999999998875 4788999999999996543
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=2.8e-15 Score=170.85 Aligned_cols=124 Identities=22% Similarity=0.241 Sum_probs=57.2
Q ss_pred ccccEEeecccCCCCCCCcC-CCCCceEEEecCCC-------------CCCCCChhhhcCCCceeEEE-ecCCcCCCCch
Q 003192 440 KFCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKD-------------PALKIPDKFFAGMIELRVLD-LTKMHLLSLPS 504 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~~~~lp~ 504 (840)
+.+++|++++|.+..+|..+ +|++|+.|++++|. .. ..++..++++++|+.|+ ++.|.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 44555566666555555554 55555555553332 11 12222344444555554 33333222221
Q ss_pred ------hhhcc--cCCcEEEecCcccCCcccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCC
Q 003192 505 ------SLHLL--VNLRTLCLDQSVLGDIAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTN 564 (840)
Q Consensus 505 ------~i~~L--~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 564 (840)
.+..+ .+|++|+|++|.++.++.++.+++|++|+|++|.++.+|..++++++|++|+|++
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC
Confidence 11111 1355555555555544445555555555555555555555555555555555555
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=130.16 Aligned_cols=130 Identities=20% Similarity=0.251 Sum_probs=113.4
Q ss_pred cccccccEEeecccCCCCCCC-c-C-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCC
Q 003192 437 DTLKFCTAISLHKCDVNELPE-E-L-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNL 512 (840)
Q Consensus 437 ~~~~~~~~l~l~~~~~~~l~~-~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L 512 (840)
.....++.|++++|.+..++. . + .+++|++|++++|.+. .++...|.++++|++|+|++|.+..+|. .|..+++|
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 345678999999999988743 2 3 8999999999999985 4555568999999999999999998876 58999999
Q ss_pred cEEEecCcccCC--cccccCCCCCCEEeccCCCCCCC-cHHHhccCCCCEEecCCCCC
Q 003192 513 RTLCLDQSVLGD--IAVIGELKQLEILSLSSSDIEHL-PREIGRLSKLRLLDLTNCSK 567 (840)
Q Consensus 513 ~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~c~~ 567 (840)
++|+|++|.++. +..++++++|++|+|++|.++.+ |..+..+++|++|++++|..
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 999999999988 36699999999999999999987 77899999999999999654
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=2.5e-13 Score=159.75 Aligned_cols=153 Identities=19% Similarity=0.260 Sum_probs=99.7
Q ss_pred ccccEEeecccCCCCCCCcC-CCCCceEEEec-----CCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCc
Q 003192 440 KFCTAISLHKCDVNELPEEL-ECPQLKFFYMY-----PKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLR 513 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~ 513 (840)
..+++|++.++.+...+... ...+|+.+.+. .|.+ .++...|..++.|++|+|++|.+..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 45788888888876665443 33444444332 2322 2455668899999999999999999999999999999
Q ss_pred EEEecCcccCC-cccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhc
Q 003192 514 TLCLDQSVLGD-IAVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKH 592 (840)
Q Consensus 514 ~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~ 592 (840)
+|+|++|.++. |..+++|++|++|+|++|.|+.+|..+++|++|++|+|++| .++.+|.. ++.
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~---------------~~~ 314 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE---------------FGN 314 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS---------------TTS
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh---------------hhc
Confidence 99999999988 56799999999999999999999999999999999999995 67788864 567
Q ss_pred CCCCCeEEEEeecCccCC
Q 003192 593 LSRLTTLEIHIQGAKILP 610 (840)
Q Consensus 593 l~~L~~L~l~~~~~~~~~ 610 (840)
+++|+.|+|++|.+...+
T Consensus 315 l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CTTCCCEECTTSCCCSHH
T ss_pred CCCccEEeCCCCccCCCC
Confidence 899999999999887544
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=1.9e-12 Score=125.99 Aligned_cols=126 Identities=19% Similarity=0.297 Sum_probs=100.9
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCC-chhhhcccCCcEEEecCcc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 521 (840)
+.++++++.+..+|..+. .+|++|++++|.+....+...|.++++|++|++++|.++.+ |..|..+++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 678888888888887552 38899999988875544444578899999999999998876 6688889999999999998
Q ss_pred cCCc--ccccCCCCCCEEeccCCCCCCC-cHHHhccCCCCEEecCCCCCCc
Q 003192 522 LGDI--AVIGELKQLEILSLSSSDIEHL-PREIGRLSKLRLLDLTNCSKLK 569 (840)
Q Consensus 522 l~~~--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~ 569 (840)
++.+ ..++++++|++|++++|.++.+ |..+..+++|++|++++|....
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 8873 3488889999999999988855 6678888889999988865433
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.3e-12 Score=125.15 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=69.8
Q ss_pred ccccEEeecccCCCCCCCcCCCC-CceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhh-hcccCCcEEEe
Q 003192 440 KFCTAISLHKCDVNELPEELECP-QLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSL-HLLVNLRTLCL 517 (840)
Q Consensus 440 ~~~~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~L~~L~~L~L 517 (840)
.+++.|++++|.+..++....+. +|++|++++|.+.. + ..|.++++|++|++++|.++.+|+.+ ..+++|++|++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-c--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 45566666666666555433333 66666666665543 2 12555666666666666666555433 56666666666
Q ss_pred cCcccCCcc---cccCCCCCCEEeccCCCCCCCcHH----HhccCCCCEEecCCC
Q 003192 518 DQSVLGDIA---VIGELKQLEILSLSSSDIEHLPRE----IGRLSKLRLLDLTNC 565 (840)
Q Consensus 518 ~~~~l~~~~---~i~~L~~L~~L~L~~~~l~~lp~~----i~~L~~L~~L~l~~c 565 (840)
++|.++.++ .++.+++|++|++++|.++.+|.. ++.+++|++|++++|
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 666655532 355566666666666666555553 555666666666553
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=1.7e-12 Score=120.69 Aligned_cols=108 Identities=23% Similarity=0.351 Sum_probs=65.4
Q ss_pred CCceEEEecCCCCC-CCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCC-cc-cccCCCCCCEEe
Q 003192 462 PQLKFFYMYPKDPA-LKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGD-IA-VIGELKQLEILS 538 (840)
Q Consensus 462 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~-~i~~L~~L~~L~ 538 (840)
++|+.|++++|.+. ..+|. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. ++ .++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666654 34444 356666666666666666655 556666666666666666655 33 344566666666
Q ss_pred ccCCCCCCCc--HHHhccCCCCEEecCCCCCCcccc
Q 003192 539 LSSSDIEHLP--REIGRLSKLRLLDLTNCSKLKSIP 572 (840)
Q Consensus 539 L~~~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~lp 572 (840)
+++|.++.+| ..++.+++|++|++++| .+..+|
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 129 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLN 129 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGST
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchH
Confidence 6666666554 55666666666666664 344443
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=7.8e-12 Score=121.53 Aligned_cols=120 Identities=24% Similarity=0.340 Sum_probs=67.3
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCcc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSV 521 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~ 521 (840)
+.++.+++.+..+|..+ .++|++|++++|.+. .+|. .|.++++|++|++++|.++.++. .|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 45666667766666543 245666666665553 4442 35556666666666666655543 45556666666666665
Q ss_pred cCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCC
Q 003192 522 LGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNC 565 (840)
Q Consensus 522 l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c 565 (840)
++.+ ..++++++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 5552 2355555666666666555555543 445555555555553
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=5.5e-12 Score=143.62 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=101.3
Q ss_pred CceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCcccccCCCCCCEEeccCC
Q 003192 463 QLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDIAVIGELKQLEILSLSSS 542 (840)
Q Consensus 463 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~ 542 (840)
.|++|++++|.+. .+|. |+++++|++|+|++|.++.+|..++.+++|++|+|++|.++.++.++++++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCC-CCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC
Confidence 4777888877765 3664 788999999999999999999999999999999999999988778999999999999999
Q ss_pred CCCCC--cHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEE
Q 003192 543 DIEHL--PREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLE 600 (840)
Q Consensus 543 ~l~~l--p~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~ 600 (840)
.++.+ |..++.+++|++|++++ +.+..+|+.+.. -+..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~-----------l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQER-----------LAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTH-----------HHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHH-----------HHHHCcccCccC
Confidence 99987 88899999999999998 456666654322 145578888875
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=4e-12 Score=121.83 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=93.1
Q ss_pred CCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCc-cc-ccCCCC
Q 003192 456 PEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDI-AV-IGELKQ 533 (840)
Q Consensus 456 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~-~~-i~~L~~ 533 (840)
+...++++|++|++++|.+. .++. +....++|++|++++|.++.+ ..+..+++|++|++++|.++.+ +. ++.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 33446778888888887765 4443 233334788888888887766 5677788888888888887763 23 477888
Q ss_pred CCEEeccCCCCCCCcH--HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCc
Q 003192 534 LEILSLSSSDIEHLPR--EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 534 L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 607 (840)
|++|++++|.++.+|. .+..+++|++|++++| .+..+|..- ...+..+++|+.|+++.|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~-----------~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYR-----------LYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHH-----------HHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHH-----------HHHHHHCCccceeCCCcCCHH
Confidence 8888888888877776 6777888888888874 445555320 012566777888777766543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=1.4e-11 Score=118.11 Aligned_cols=126 Identities=21% Similarity=0.325 Sum_probs=100.1
Q ss_pred ccEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCc
Q 003192 442 CTAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQS 520 (840)
Q Consensus 442 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~ 520 (840)
.+.++++++.+..+|... .++|++|++++|.+. .++...|.++++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 357788888888887544 378899999988875 5666668889999999999999988876 4688899999999999
Q ss_pred ccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCCCCc
Q 003192 521 VLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCSKLK 569 (840)
Q Consensus 521 ~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~ 569 (840)
.++.+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++|....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 88874 2378889999999999988888776 4678889999998865433
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=9.3e-12 Score=121.00 Aligned_cols=124 Identities=21% Similarity=0.284 Sum_probs=104.5
Q ss_pred eEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCc--ccccCCCCCCEEeccCC
Q 003192 465 KFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEILSLSSS 542 (840)
Q Consensus 465 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~ 542 (840)
++++++++.+ ..+|..+ .+.|++|++++|.++.+|..+..+++|++|+|++|.++.+ ..+.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l-~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCC-SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCC-CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5678887776 4677653 3689999999999999999999999999999999999884 45999999999999999
Q ss_pred CCCCCcH-HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCc
Q 003192 543 DIEHLPR-EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 543 ~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 607 (840)
.++.+|. .+..+++|++|++++ +.+..+|... +..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~--------------~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGA--------------FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTT--------------TTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhh--------------hhcCccccEEEeCCCCee
Confidence 9998865 588999999999999 5677777632 667889999999887654
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.28 E-value=6.6e-11 Score=120.14 Aligned_cols=201 Identities=13% Similarity=0.155 Sum_probs=120.7
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPS-VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|.....++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+... ... .... ...+.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~---~~~---~~~~-~~~~~ 90 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---PCG---VCDN-CREIE 90 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS---CCS---CSHH-HHHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCc---ccHH-HHHHh
Confidence 45566779999999999999987543 3589999999999999999999887543211100 000 0000 00010
Q ss_pred HHhCCCc-----cccChhhHHHHHHHHHH----cCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCCcchh-
Q 003192 158 DELGLFL-----CEESESGRARRLYARMK----EEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRSRGVL- 225 (840)
Q Consensus 158 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~~~v~- 225 (840)
....... ...........+.+.+. .+++.+||+||++.. ..++.+...+.....+.++|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0000000 00001111222222221 246799999999763 23444443343345577888888765432
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
.........+.+++++.++..+++...+...+. .-..+..+.|++.|+|+|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111222357999999999999999987543221 2234668899999999999988776543
No 138
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.26 E-value=1e-10 Score=116.85 Aligned_cols=192 Identities=11% Similarity=0.089 Sum_probs=122.0
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIAD 158 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 158 (840)
.|.....++||++.++++.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHH
Confidence 34556679999999999999998766556999999999999999999987644311122444554444443333322222
Q ss_pred HhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCcchh-hcccCccceE
Q 003192 159 ELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSRGVL-SREMDSEINF 235 (840)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~~v~-~~~~~~~~~~ 235 (840)
...... ...+++.+||+||++... ..+.+...+.....+.++|+||+..... .........+
T Consensus 92 ~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 92 FARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp HHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 111100 012467999999997652 2333333333344567888888775432 1111223478
Q ss_pred EccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 003192 236 LVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKA 288 (840)
Q Consensus 236 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 288 (840)
.+.+++.++..+++...+...+. .-..+..+.+++.++|.|..+..+...
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999887532221 123466788999999999865554433
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=1.6e-12 Score=152.94 Aligned_cols=103 Identities=21% Similarity=0.371 Sum_probs=48.9
Q ss_pred cccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecC
Q 003192 441 FCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQ 519 (840)
Q Consensus 441 ~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~ 519 (840)
.++.|++++|.+..+|..+ .+++|++|+|++|.+. .+|.. |+++++|++|+|++|.++.+|..|+.|++|++|+|++
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence 4444555555444444333 4444555555444443 44433 3444455555555554444444444455555555555
Q ss_pred cccCC-cccccCCCCCCEEeccCCCCC
Q 003192 520 SVLGD-IAVIGELKQLEILSLSSSDIE 545 (840)
Q Consensus 520 ~~l~~-~~~i~~L~~L~~L~L~~~~l~ 545 (840)
|.++. |..|++|++|++|+|++|.++
T Consensus 303 N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 303 NMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCccChhhhcCCCccEEeCCCCccC
Confidence 44444 233444455555555554444
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=1.4e-11 Score=119.83 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=99.8
Q ss_pred eEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchh--hhcccCCcEEEecCcccCCc--ccccCCCCCCEEecc
Q 003192 465 KFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSS--LHLLVNLRTLCLDQSVLGDI--AVIGELKQLEILSLS 540 (840)
Q Consensus 465 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~ 540 (840)
++++++++.+ ..+|..++ ..|++|++++|.+..+|.. +..+++|++|+|++|.++.+ ..++++++|++|+|+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCc-CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 6788888877 56776532 3899999999999988763 89999999999999999883 568999999999999
Q ss_pred CCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCc
Q 003192 541 SSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 541 ~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 607 (840)
+|.++.+|.. +..+++|++|++++| .+..+++ ..+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~--------------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMP--------------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSS-CCCEECT--------------TSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCH--------------HHhhcCCCCCEEEeCCCCcc
Confidence 9999977654 788999999999995 4554433 22567889999999888765
No 141
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.22 E-value=1.3e-10 Score=126.64 Aligned_cols=285 Identities=13% Similarity=0.084 Sum_probs=164.5
Q ss_pred ccccchHHHHHHHHHHhC----CCCccEEEEEcCCCCcHHHHHHHHHHHhhcc----CC--CCcEEEEEeCCCc-cHHHH
Q 003192 84 QAFDSRISTFKDITNALS----NPSVDMIGICGMGGIGKTMLVKEIARQVKGH----KL--FDEVVFVDVPQIP-DIKKM 152 (840)
Q Consensus 84 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~ 152 (840)
..++||+++++++.+++. ....+.|.|+|++|+||||+|+.+++..... .. ...++|++.+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 568999999999887765 3445789999999999999999999876432 11 2346788877666 78888
Q ss_pred HHHHHHHh-CCCcc--ccChhhHHHHHHHHHHcCCcEEEEEcccccccC---ccccCCccCCCCCCcEEEEeeCCcchh-
Q 003192 153 QGQIADEL-GLFLC--EESESGRARRLYARMKEEKKILVILDDIWARLD---LETLGIPLGDEHKGCKVLLTSRSRGVL- 225 (840)
Q Consensus 153 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iliTtR~~~v~- 225 (840)
...++..+ +.... ..........+.+.+.. ++.+|||||++.... .+.+...+.....+..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 88888887 32211 11223345555565554 345999999976421 122011111111678899998875321
Q ss_pred ---hcc-cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcC---CChH-HHHHHHHHHh---c---
Q 003192 226 ---SRE-MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECA---GLPI-AIVTIAKALR---E--- 291 (840)
Q Consensus 226 ---~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Pl-ai~~~~~~l~---~--- 291 (840)
... ......+.+++++.++..+++...+..+-. ...-.++..+.+++.++ |.|. |+..+-.... +
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI-KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSC-TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcc-cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 110 011138999999999999999987532100 11122345677888887 9887 4444433321 1
Q ss_pred cCHHHHHHHHHHhcCCCCCCCcchhhhhhhhhhccccCCCchhhHHHHHHhhccCCcCCCCHHHHHH--HHhhccccccc
Q 003192 292 ENLFEWKNALLELKRPSWRNFSGVQAAACSTIELSFNFLTGEDLKSTLLLCSLMGYTYHASMLDLLK--YGMGMGLFKDV 369 (840)
Q Consensus 292 ~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~--~wiaeg~i~~~ 369 (840)
-+.+.+..+++... ...+.-++..|+++ -+..+...+. .+.. .++.+ .-+++.+-...
T Consensus 258 i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~-~~~~----~~~~~~~~~~~~~~g~~~ 317 (384)
T 2qby_B 258 IRKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLIE-SEDV----MSAHKMYTDLCNKFKQKP 317 (384)
T ss_dssp CCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHT-CCBH----HHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHH-hccc----ChHHHHHHHHHHHcCCCC
Confidence 25566666655421 12344556778776 3444443443 1110 11110 01111110001
Q ss_pred ccHHHHHHhHHHHHHHhhhcccccc
Q 003192 370 NTMEEARDRACPLVHKLKACSLLLD 394 (840)
Q Consensus 370 ~~~~~~~~~~~~~~~~L~~~~l~~~ 394 (840)
.. ......+++.|...+++..
T Consensus 318 ~~----~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 318 LS----YRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp CC----HHHHHHHHHHHHHTTSEEE
T ss_pred CC----HHHHHHHHHHHHhCCCEEE
Confidence 11 2334567888999999975
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=6.7e-13 Score=130.00 Aligned_cols=151 Identities=20% Similarity=0.282 Sum_probs=108.2
Q ss_pred ccEEeeccc--CCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEec
Q 003192 442 CTAISLHKC--DVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLD 518 (840)
Q Consensus 442 ~~~l~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 518 (840)
++...+.+. .++.+|..+ .+++|++|++++|.+.. +| .+.++++|++|++++|.+..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 344444433 445555555 78889999998887754 66 4788889999999999888888888888899999999
Q ss_pred CcccCCcccccCCCCCCEEeccCCCCCCCcH--HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCC
Q 003192 519 QSVLGDIAVIGELKQLEILSLSSSDIEHLPR--EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRL 596 (840)
Q Consensus 519 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L 596 (840)
+|.++.++.++.+++|++|++++|.++.+|. .+..+++|++|++++|......|..- .........+..+++|
T Consensus 102 ~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-----~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 102 YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-----ATSEYRIEVVKRLPNL 176 (198)
T ss_dssp EEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT-----THHHHHHHHHHHCSSC
T ss_pred CCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc-----chHHHHHHHHHhCCCc
Confidence 9988887788888899999999998887765 67888899999998864322222200 0000011235678888
Q ss_pred CeEE
Q 003192 597 TTLE 600 (840)
Q Consensus 597 ~~L~ 600 (840)
+.|+
T Consensus 177 ~~Ld 180 (198)
T 1ds9_A 177 KKLD 180 (198)
T ss_dssp SEEC
T ss_pred EEEC
Confidence 8776
No 143
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.20 E-value=1e-09 Score=119.63 Aligned_cols=288 Identities=15% Similarity=0.117 Sum_probs=168.6
Q ss_pred cccccchHHHHHHHHHHhC----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccC---CC-CcEEEEEeCCCccHHHHHH
Q 003192 83 YQAFDSRISTFKDITNALS----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHK---LF-DEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~~~~ 154 (840)
+..++||+++++++..++. ....+.+.|+|++|+||||+|+.+++...... .. ..++|++.....+...+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3569999999999999884 24567899999999999999999998764320 01 2367888888888899999
Q ss_pred HHHHHhCCCcccc--ChhhHHHHHHHHHH-cCCcEEEEEcccccccC----cccc---CCccCCC--CCCcEEEEeeCCc
Q 003192 155 QIADELGLFLCEE--SESGRARRLYARMK-EEKKILVILDDIWARLD----LETL---GIPLGDE--HKGCKVLLTSRSR 222 (840)
Q Consensus 155 ~i~~~l~~~~~~~--~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~----~~~l---~~~l~~~--~~gs~iliTtR~~ 222 (840)
.++.+++...... ........+.+.+. .+++.+|||||++.... .+.+ ....... ..+..+|+||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 9999997643322 12233455555554 34588999999976421 1111 1111111 3456777777765
Q ss_pred chh----hcccC--ccceEEccCCCHHHHHHHHHHHHhc--CCCCCCcchHHHHHHHHHHcC---CChHH-HHHHHHHHh
Q 003192 223 GVL----SREMD--SEINFLVGILSQEESWSLFQKMVAE--GDCIRNHDLQSLAVAIAKECA---GLPIA-IVTIAKALR 290 (840)
Q Consensus 223 ~v~----~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~Pla-i~~~~~~l~ 290 (840)
... ..... ....+.+++++.++..+++...+.. ..... ..+..+.+++.++ |.|.. +..+.....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL---DPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB---CSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 321 00011 1147899999999999999987532 21111 2335677788887 99943 333322221
Q ss_pred -----c---cCHHHHHHHHHHhcCCCCCCCcchhhhhhhhhhccccCCCchhhHHHHHHhh-ccCCcCCCCHHHHHHHHh
Q 003192 291 -----E---ENLFEWKNALLELKRPSWRNFSGVQAAACSTIELSFNFLTGEDLKSTLLLCS-LMGYTYHASMLDLLKYGM 361 (840)
Q Consensus 291 -----~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a-~fp~~~~~~~~~li~~wi 361 (840)
+ -+.+.++.++.... ...+.-++..++++ .+..+...+ ++.....+...++.+...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 14555555555421 12234456788876 344444344 333222444454443221
Q ss_pred ----hcccccccccHHHHHHhHHHHHHHhhhcccccc
Q 003192 362 ----GMGLFKDVNTMEEARDRACPLVHKLKACSLLLD 394 (840)
Q Consensus 362 ----aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 394 (840)
..|. . .. .......+++.|...+++..
T Consensus 320 ~~~~~~~~-~-~~----~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 320 ELTSTLGL-E-HV----TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHTTC-C-CC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhcCC-C-CC----CHHHHHHHHHHHHhCCCeEE
Confidence 1121 0 11 12344567888888898865
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=5.5e-13 Score=130.60 Aligned_cols=112 Identities=25% Similarity=0.296 Sum_probs=97.3
Q ss_pred hhcCCCceeEEEecCCcCCCCchhhhcccCCcEEEecCcccCCc-ccccCCCCCCEEeccCCCCCCCcHHHhccCCCCEE
Q 003192 482 FFAGMIELRVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDI-AVIGELKQLEILSLSSSDIEHLPREIGRLSKLRLL 560 (840)
Q Consensus 482 ~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 560 (840)
.|.++++|++|++++|.+..+| .+..+++|++|++++|.++.+ ..++.+++|++|++++|.++.+| .+..+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4889999999999999999999 899999999999999999885 45677899999999999999988 69999999999
Q ss_pred ecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccC
Q 003192 561 DLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKIL 609 (840)
Q Consensus 561 ~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 609 (840)
++++| .+..+|. +..+..+++|+.|++++|.+...
T Consensus 121 ~l~~N-~i~~~~~-------------~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 121 YMSNN-KITNWGE-------------IDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EESEE-ECCCHHH-------------HHHHTTTTTCSEEEECSCHHHHH
T ss_pred ECCCC-cCCchhH-------------HHHHhcCCCCCEEEecCCccccc
Confidence 99994 5555543 13478899999999999988654
No 145
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=1.2e-10 Score=127.20 Aligned_cols=201 Identities=17% Similarity=0.145 Sum_probs=127.8
Q ss_pred cccccchHHHHHHHHHHhC----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC-CCcEEEEEeCCCccHHHHHHHHH
Q 003192 83 YQAFDSRISTFKDITNALS----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKL-FDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
+..|+||+++++.+.+++. ......|.|+|++|+||||||+.+++....... -..++|++.....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999887 345678999999999999999999998754311 12467787766667777888887
Q ss_pred HHhCCCcccc--ChhhHHHHHHHHHHc-CCcEEEEEccccccc------CccccCCccCC-CCCCcEEEEeeCCcchhhc
Q 003192 158 DELGLFLCEE--SESGRARRLYARMKE-EKKILVILDDIWARL------DLETLGIPLGD-EHKGCKVLLTSRSRGVLSR 227 (840)
Q Consensus 158 ~~l~~~~~~~--~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~l~~-~~~gs~iliTtR~~~v~~~ 227 (840)
..++...... ........+.+.+.. +++.+||+|+++... .+..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 7775533211 122334445555543 448999999997642 11222111111 2335667888876643211
Q ss_pred cc----C--ccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcC---CChHHHHH
Q 003192 228 EM----D--SEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECA---GLPIAIVT 284 (840)
Q Consensus 228 ~~----~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Plai~~ 284 (840)
.. . ....+.+++++.++..+++...+.... ....-..+..+.+++.++ |.|..+..
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 00 0 114799999999999999988643111 011223556677777777 99984443
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.17 E-value=1.4e-09 Score=118.72 Aligned_cols=288 Identities=14% Similarity=0.097 Sum_probs=170.7
Q ss_pred ccccchHHHHHHHHHHhCC----CCcc--EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 84 QAFDSRISTFKDITNALSN----PSVD--MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 84 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
..++||+++++++..++.. .... .+.|+|++|+||||+|+.+++....... ..++|++.+...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 5699999999999988863 2334 8999999999999999999998764311 2467788778778889999999
Q ss_pred HHhCCCcccc--ChhhHHHHHHHHHH-cCCcEEEEEccccccc--CccccCCccCC-CC---CCcEEEEeeCCcchhhcc
Q 003192 158 DELGLFLCEE--SESGRARRLYARMK-EEKKILVILDDIWARL--DLETLGIPLGD-EH---KGCKVLLTSRSRGVLSRE 228 (840)
Q Consensus 158 ~~l~~~~~~~--~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~~~l~~~l~~-~~---~gs~iliTtR~~~v~~~~ 228 (840)
..++...... ........+.+.+. .+++.+||||+++... .+..+...+.. .. .+..||++|+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 9887643221 22233344444443 2568999999997652 22222222211 11 466788888776432110
Q ss_pred c----C--ccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHc---------CCChHHHHHHHHHHh---
Q 003192 229 M----D--SEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKEC---------AGLPIAIVTIAKALR--- 290 (840)
Q Consensus 229 ~----~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~Plai~~~~~~l~--- 290 (840)
. . ....+.+.+++.++..+++...+..... ...-.++..+.+++.+ +|.|..+..+.....
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 0 0 1136999999999999999887532100 1122356788899999 798765544433221
Q ss_pred ---cc---CHHHHHHHHHHhcCCCCCCCcchhhhhhhhhhccccCCCchhhHHHHHHhhccC---CcCCCCHHHHHHHHh
Q 003192 291 ---EE---NLFEWKNALLELKRPSWRNFSGVQAAACSTIELSFNFLTGEDLKSTLLLCSLMG---YTYHASMLDLLKYGM 361 (840)
Q Consensus 291 ---~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp---~~~~~~~~~li~~wi 361 (840)
+. +.+....+..... ...+.-.+..|+++ .+.++...+.+. .+..+....+...+-
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~--------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVL--------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHS--------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHHh--------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 11 2233333333221 11122335567776 466655555443 111445555554332
Q ss_pred h----cccccccccHHHHHHhHHHHHHHhhhcccccc
Q 003192 362 G----MGLFKDVNTMEEARDRACPLVHKLKACSLLLD 394 (840)
Q Consensus 362 a----eg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 394 (840)
. .|... - .......++++|...+++..
T Consensus 320 ~~~~~~~~~~--~----~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 320 IVCEEYGERP--R----VHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHHTTCCC--C----CHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHcCCCC--C----CHHHHHHHHHHHHhCCCeEE
Confidence 2 12111 0 12334568889999999965
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=1.3e-10 Score=111.46 Aligned_cols=126 Identities=25% Similarity=0.365 Sum_probs=102.2
Q ss_pred ceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCcccCCcc--cccCCCCCCEEecc
Q 003192 464 LKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVLGDIA--VIGELKQLEILSLS 540 (840)
Q Consensus 464 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~~~--~i~~L~~L~~L~L~ 540 (840)
.+.+.+.++.+ ..+|.. -.+.|++|++++|.+..+|. .+..+++|++|++++|.++.++ .++.+++|++|+++
T Consensus 9 ~~~l~~~~~~l-~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGL-TSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCC-SSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCC-ccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 46777877776 456654 34789999999999998876 5689999999999999998843 37899999999999
Q ss_pred CCCCCCCcHH-HhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCcc
Q 003192 541 SSDIEHLPRE-IGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKI 608 (840)
Q Consensus 541 ~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 608 (840)
+|.++.+|.. +..+++|++|++++| .++.+|..+ +..+++|+.|++++|.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~--------------~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGI--------------FDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT--------------TTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCC-cceEeCHHH--------------hcCCcccCEEEecCCCeec
Confidence 9999988765 588999999999984 677777643 5678899999999887654
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=2.9e-10 Score=108.23 Aligned_cols=78 Identities=29% Similarity=0.444 Sum_probs=40.7
Q ss_pred CceeEEEecCCcCCCC-chhhhcccCCcEEEecCcccCCcc--cccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEec
Q 003192 487 IELRVLDLTKMHLLSL-PSSLHLLVNLRTLCLDQSVLGDIA--VIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDL 562 (840)
Q Consensus 487 ~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~~~--~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 562 (840)
+.|++|+|++|.+..+ |..|..+++|++|+|++|.++.++ .++++++|++|+|++|.|+.+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4455555555555544 334555555555555555555421 145555555555555555555543 555555555555
Q ss_pred CC
Q 003192 563 TN 564 (840)
Q Consensus 563 ~~ 564 (840)
++
T Consensus 113 ~~ 114 (174)
T 2r9u_A 113 YN 114 (174)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=3.1e-10 Score=108.12 Aligned_cols=105 Identities=24% Similarity=0.412 Sum_probs=91.8
Q ss_pred eEEEecCCcCCCCchhhhcccCCcEEEecCcccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCC
Q 003192 490 RVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCS 566 (840)
Q Consensus 490 ~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~ 566 (840)
+.++++++.+..+|..+. ++|++|+|++|.++.+ ..++++++|++|+|++|+|+.+|.. +.++++|++|+|++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 689999999999998775 8999999999999884 5699999999999999999999876 48999999999999 5
Q ss_pred CCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCC
Q 003192 567 KLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPR 611 (840)
Q Consensus 567 ~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 611 (840)
.+..+|+.. +..+++|+.|++++|.+...+.
T Consensus 92 ~l~~l~~~~--------------~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGA--------------FDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTT--------------TTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHH--------------hccccCCCEEEeCCCCcccccc
Confidence 677777632 6788999999999998876654
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=1.4e-09 Score=115.31 Aligned_cols=194 Identities=15% Similarity=0.114 Sum_probs=120.9
Q ss_pred cccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 78 TLSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 78 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
..|.....++||+..++.+.+++..+..+.+.|+|++|+||||+|+.+++..........+++++.+.......+ ++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 93 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQI 93 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHH
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHH
Confidence 345667789999999999999998766555999999999999999999998643211112445544443333222 2222
Q ss_pred HHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCcchh-hcccCccce
Q 003192 158 DELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSRGVL-SREMDSEIN 234 (840)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~~v~-~~~~~~~~~ 234 (840)
+.+..... .+..+++.++|+||++... .++.+...+.....++++|+||....-. .........
T Consensus 94 ~~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 94 KHFAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHHHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 22110000 0002458999999998642 2333333333334567888888764322 111223347
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHH-HHHHHHH
Q 003192 235 FLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIA-IVTIAKA 288 (840)
Q Consensus 235 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla-i~~~~~~ 288 (840)
+.+.+++.++..+++...+...+. .-.++....+++.++|.|.. +..+...
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDV---KYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999887532211 12346678999999999954 4444433
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=4.6e-10 Score=106.50 Aligned_cols=101 Identities=26% Similarity=0.404 Sum_probs=55.2
Q ss_pred eEEEecCCcCCCCchhhhcccCCcEEEecCcccCCc--ccccCCCCCCEEeccCCCCCCCcHH-HhccCCCCEEecCCCC
Q 003192 490 RVLDLTKMHLLSLPSSLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEILSLSSSDIEHLPRE-IGRLSKLRLLDLTNCS 566 (840)
Q Consensus 490 ~~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~c~ 566 (840)
+++++++|.++.+|..+. ++|++|+|++|.++.+ ..++++++|++|+|++|.|+.+|.. +.++++|++|++++ +
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-N 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-C
Confidence 455555555555555442 5556666666655552 3355566666666666666655543 35566666666665 3
Q ss_pred CCccccccccccccccccCChhhhhcCCCCCeEEEEeecCc
Q 003192 567 KLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 567 ~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 607 (840)
.+..+|+.. +..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~--------------~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGA--------------FDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTT--------------TTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHH--------------hcCCCCCCEEEeCCCCCC
Confidence 444444421 445556666666655544
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=8.8e-10 Score=104.53 Aligned_cols=101 Identities=22% Similarity=0.362 Sum_probs=47.5
Q ss_pred cEEeecccCCCCCCCcCCCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCchh-hhcccCCcEEEecCcc
Q 003192 443 TAISLHKCDVNELPEELECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPSS-LHLLVNLRTLCLDQSV 521 (840)
Q Consensus 443 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~L~~~~ 521 (840)
+.++++++.+..+|..+ .++|++|++++|.+.. +++..|.++++|++|+|++|.++.+|.. |..+++|++|+|++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 45666666666665433 2445555555554432 2222344555555555555555544432 3444444444444444
Q ss_pred cCCc-c-cccCCCCCCEEeccCCCCC
Q 003192 522 LGDI-A-VIGELKQLEILSLSSSDIE 545 (840)
Q Consensus 522 l~~~-~-~i~~L~~L~~L~L~~~~l~ 545 (840)
++.+ + .++.+++|++|+|++|.++
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4442 1 2444444444444444443
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=9.5e-10 Score=116.89 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=51.4
Q ss_pred ccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCC-EEEEecCCCCcccccHH
Q 003192 684 GFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLG-IIKVGNCNKLKSILSVS 762 (840)
Q Consensus 684 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~-~L~l~~C~~L~~l~~~~ 762 (840)
.+++|+.|+|.++. +..++.. .+..+++|+.|.+.+ +++.++. .....+++|+ .+.+.+ +++.+.+ .
T Consensus 224 ~~~~L~~l~L~~n~-i~~I~~~----aF~~~~~L~~l~l~~--ni~~I~~--~aF~~~~~L~~~l~l~~--~l~~I~~-~ 291 (329)
T 3sb4_A 224 YMPNLVSLDISKTN-ATTIPDF----TFAQKKYLLKIKLPH--NLKTIGQ--RVFSNCGRLAGTLELPA--SVTAIEF-G 291 (329)
T ss_dssp HCTTCCEEECTTBC-CCEECTT----TTTTCTTCCEEECCT--TCCEECT--TTTTTCTTCCEEEEECT--TCCEECT-T
T ss_pred hcCCCeEEECCCCC-cceecHh----hhhCCCCCCEEECCc--ccceehH--HHhhCChhccEEEEEcc--cceEEch-h
Confidence 35677777776643 4444322 334566777777765 2555542 2334566677 777766 5666654 3
Q ss_pred HhhhcccCcEEEEcccccchhhc
Q 003192 763 IARGLQQLQVIDVTECKSMEVIL 785 (840)
Q Consensus 763 ~~~~l~~L~~L~l~~c~~l~~~~ 785 (840)
.+.++++|+.|++.+ +.+..+.
T Consensus 292 aF~~c~~L~~l~l~~-n~i~~I~ 313 (329)
T 3sb4_A 292 AFMGCDNLRYVLATG-DKITTLG 313 (329)
T ss_dssp TTTTCTTEEEEEECS-SCCCEEC
T ss_pred hhhCCccCCEEEeCC-CccCccc
Confidence 456677777777755 3555553
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=4.4e-09 Score=111.73 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=118.3
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIAD 158 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 158 (840)
.|.....++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++.......-...+.++.+.......+.. .+.
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 98 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIRE-KVK 98 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHH-HHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHH-HHH
Confidence 4556677999999999999998876666699999999999999999999864321001234444332211111111 111
Q ss_pred HhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCCcchh-hcccCccceE
Q 003192 159 ELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRSRGVL-SREMDSEINF 235 (840)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~~~v~-~~~~~~~~~~ 235 (840)
.+... ..+..+++.++|+||++.. ...+.+...+.....++++|+||....-. .........+
T Consensus 99 ~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 99 EFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 00000 0011146789999999764 22333333333334567888888765322 1111122378
Q ss_pred EccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 236 LVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 236 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
.+.+++.++..+++...+...+. .-..+..+.|++.++|.|..+..+...+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC---EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999999999999877543221 2335677889999999998765544433
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.92 E-value=8.5e-09 Score=109.30 Aligned_cols=180 Identities=14% Similarity=0.139 Sum_probs=108.0
Q ss_pred cCCcccccchHHHHHHHHHHhC-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHH
Q 003192 80 SKGYQAFDSRISTFKDITNALS-----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 154 (840)
|.....|+|++..++++..++. ......|.|+|++|+|||++|+.+++..... .++++.+......++..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~-----~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-----LRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC-----EEEECTTTCCSHHHHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEeccccCChHHHHH
Confidence 3456679999998888888775 2234678899999999999999999876422 34554443333222221
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccC---------C---------CCCCcE
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLG---------D---------EHKGCK 214 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~---------~---------~~~gs~ 214 (840)
.+.. .+ .+..+|++||+.... ....+...+. . ...+.+
T Consensus 83 ----~l~~----------------~~--~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 83 ----ILAN----------------SL--EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ----HHTT----------------TC--CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ----HHHH----------------hc--cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1110 00 345688888886532 1111100000 0 012355
Q ss_pred EEEeeCCcchhhc-ccCc-cceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHH
Q 003192 215 VLLTSRSRGVLSR-EMDS-EINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAKAL 289 (840)
Q Consensus 215 iliTtR~~~v~~~-~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 289 (840)
+|.||........ .... ...+.+.+++.++..+++...+...+. .-..+..+.+++.++|.|..+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666664432211 1112 247899999999999998887543221 2235678899999999998877665554
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=2.2e-09 Score=114.10 Aligned_cols=246 Identities=14% Similarity=0.166 Sum_probs=131.3
Q ss_pred cccccEEeecccCCCCCCCcC-CCCCceEEEecCCCCCCCCChhhhcC--------CCceeEEEecCCcCCCCch-hhhc
Q 003192 439 LKFCTAISLHKCDVNELPEEL-ECPQLKFFYMYPKDPALKIPDKFFAG--------MIELRVLDLTKMHLLSLPS-SLHL 508 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~lp~-~i~~ 508 (840)
+.+++.|++++|.+..+.... .++.++.+.+..+ .+|...|.+ +++|+.|+|++ .++.++. +|..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 345667777776665211111 1222333333333 455566777 77788877777 6776654 5777
Q ss_pred ccCCcEEEecCcccCCc--ccccCCCCCCEEeccCCC----CCCCc-HHHhccCCCC-EEecCCCCCCccccccc-----
Q 003192 509 LVNLRTLCLDQSVLGDI--AVIGELKQLEILSLSSSD----IEHLP-REIGRLSKLR-LLDLTNCSKLKSIPPNV----- 575 (840)
Q Consensus 509 L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~~----l~~lp-~~i~~L~~L~-~L~l~~c~~l~~lp~~l----- 575 (840)
+++|+.|++++|.+..+ ..|..+.++.++.+..+. ...+. ..+.++.+|+ .+.+.... .+|..+
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~ 199 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGL 199 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTC
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhccc
Confidence 77788777777776552 446666666666555421 11111 1123333444 33332211 111111
Q ss_pred -----cccccccc--cCChhhh-hcCCCCCeEEEEeecCccCCCcc--ccccCcEEEEEEcCcCCcCCCCCCccEEEEee
Q 003192 576 -----ERLNIERS--NASLDEL-KHLSRLTTLEIHIQGAKILPRGL--FSKKLERYKILIGDEWDWHGKYETSRTLKLML 645 (840)
Q Consensus 576 -----~~L~~~~~--~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~ 645 (840)
..+..... ......+ ..+++|+.|++..|.+..+|... .+.+|+.+.+ ..
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l--------------------~~ 259 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL--------------------PH 259 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC--------------------CT
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC--------------------Cc
Confidence 11100000 0011112 23788999999888888888765 4455665544 22
Q ss_pred cCcccchhhHHHhhcccc-eeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceec
Q 003192 646 NTRTCLENGTIMQLKGIE-DLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLF 721 (840)
Q Consensus 646 ~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~ 721 (840)
+ ...++...+..+++|+ .+.+.+ .++.++.. ...++++|+.|++.++ .+..+... .+..+++|+.+.
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~n-~i~~I~~~----aF~~~~~L~~ly 327 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATGD-KITTLGDE----LFGNGVPSKLIY 327 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECSS-CCCEECTT----TTCTTCCCCEEE
T ss_pred c-cceehHHHhhCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCCC-ccCccchh----hhcCCcchhhhc
Confidence 2 3445666677788898 888876 34334322 2377899999998764 35555322 334567777664
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=8e-08 Score=104.32 Aligned_cols=258 Identities=15% Similarity=0.139 Sum_probs=135.1
Q ss_pred CCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecCcccCCc--ccccCCCCCCEEe
Q 003192 462 PQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEILS 538 (840)
Q Consensus 462 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~ 538 (840)
..++.+.+..+ ...++...|.++ +|+.+.+..+ ++.++. +|.+ .+|+.+.+.. .++.+ ..|.++.+|+.++
T Consensus 113 ~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 45555555432 234555566665 6888887665 666654 4555 3688888775 44443 4577888888888
Q ss_pred ccCCCCCCCcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCcc-cccc
Q 003192 539 LSSSDIEHLPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGL-FSKK 617 (840)
Q Consensus 539 L~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~ 617 (840)
++.|+++.+|.......+|+.+.+.. .+..++.. .|.++++|+.+.+.. ++..++... ...+
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~--------------aF~~~~~L~~l~l~~-~l~~I~~~aF~~~~ 249 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQ--------------AFLKTSQLKTIEIPE-NVSTIGQEAFRESG 249 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTT--------------TTTTCTTCCCEECCT-TCCEECTTTTTTCC
T ss_pred cCCCcceEechhhEeecccCEEEeCC--chheehhh--------------HhhCCCCCCEEecCC-CccCccccccccCC
Confidence 88888888776655567888888764 35555542 367777888877753 234444332 1123
Q ss_pred CcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccc----hhhcccccccccCCCcEEEe
Q 003192 618 LERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDV----KNVLNELDAEGFLQLKHLHV 693 (840)
Q Consensus 618 L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~~~l~~L~~L~l 693 (840)
|+.+.+. +....++...+..+++|+.+.+.++... ..++. -...++++|+.+.+
T Consensus 250 L~~i~lp---------------------~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 250 ITTVKLP---------------------NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLARFEI 307 (401)
T ss_dssp CSEEEEE---------------------TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCEECC
T ss_pred ccEEEeC---------------------CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCeEEe
Confidence 3333331 2223333444455566666666543221 01111 11245566666666
Q ss_pred ecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhc-ccCcE
Q 003192 694 QNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGL-QQLQV 772 (840)
Q Consensus 694 ~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l-~~L~~ 772 (840)
.+ .++.+... .+..+++|+.+.|.. +++.+.... ...+ +|+.+.+.+. .+..++.. .+.++ .+++.
T Consensus 308 ~~--~i~~I~~~----aF~~c~~L~~l~lp~--~l~~I~~~a--F~~~-~L~~l~l~~n-~~~~l~~~-~F~~~~~~l~~ 374 (401)
T 4fdw_A 308 PE--SIRILGQG----LLGGNRKVTQLTIPA--NVTQINFSA--FNNT-GIKEVKVEGT-TPPQVFEK-VWYGFPDDITV 374 (401)
T ss_dssp CT--TCCEECTT----TTTTCCSCCEEEECT--TCCEECTTS--SSSS-CCCEEEECCS-SCCBCCCS-SCCCSCTTCCE
T ss_pred CC--ceEEEhhh----hhcCCCCccEEEECc--cccEEcHHh--CCCC-CCCEEEEcCC-CCcccccc-cccCCCCCccE
Confidence 53 23333211 223455566665532 344443222 2234 5666666652 34444332 22333 24555
Q ss_pred EEEcc
Q 003192 773 IDVTE 777 (840)
Q Consensus 773 L~l~~ 777 (840)
|++-.
T Consensus 375 l~vp~ 379 (401)
T 4fdw_A 375 IRVPA 379 (401)
T ss_dssp EEECG
T ss_pred EEeCH
Confidence 55543
No 158
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.79 E-value=6e-08 Score=102.46 Aligned_cols=187 Identities=11% Similarity=0.107 Sum_probs=116.5
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-cEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFD-EVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|.....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++...... +. ..+.++.+.......+.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~---- 86 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVR---- 86 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTCTTTSS----
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccChHHHH----
Confidence 4556677999999999999998876665699999999999999999998864221 11 23344444321111110
Q ss_pred HHhCCCccccChhhHHHHHHHH--HHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCcchh-hcccCcc
Q 003192 158 DELGLFLCEESESGRARRLYAR--MKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSRGVL-SREMDSE 232 (840)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~~v~-~~~~~~~ 232 (840)
......... +..+++.++|+|+++... ..+.+...+.....+.++|+||....-. .......
T Consensus 87 -------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 87 -------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp -------------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred -------------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 001111000 012457899999997642 2344444444444567788887664321 1111223
Q ss_pred ceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 003192 233 INFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIA 286 (840)
Q Consensus 233 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 286 (840)
..+.+.+++.++..+++...+...+. .-..+....+++.++|.+..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCC---CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 47999999999999999877543221 2235567888999999998655443
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.72 E-value=1.8e-07 Score=101.21 Aligned_cols=198 Identities=13% Similarity=0.155 Sum_probs=114.7
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPS-VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|.....++||+..++.+..++..+. ...+.|+|++|+||||+|+.+++.......+.. ..+........+.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIE 83 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHh
Confidence 34556679999999999999887544 357899999999999999999988754321110 0000000011111
Q ss_pred HHhCCCc-----cccChhhHHHHHHHHHH----cCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCcchh-
Q 003192 158 DELGLFL-----CEESESGRARRLYARMK----EEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSRGVL- 225 (840)
Q Consensus 158 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~~v~- 225 (840)
..-..+. ......+....+.+.+. .+++.++|+||++... ..+.+...+.....+..+|++|....-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 0000000 00001112233333332 2457899999997542 2333333333334466777777654321
Q ss_pred hcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 003192 226 SREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIA 286 (840)
Q Consensus 226 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 286 (840)
.........+.+.+++.++..+++...+...+. .-..+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 111223357899999999999999876432211 2234567889999999998776654
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.70 E-value=1.9e-09 Score=115.96 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=114.0
Q ss_pred cccccEEeecccCCCCCC-----CcC--CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhh----
Q 003192 439 LKFCTAISLHKCDVNELP-----EEL--ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSL---- 506 (840)
Q Consensus 439 ~~~~~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i---- 506 (840)
.+.++.|++++|.+.... ..+ .+++|++|++++|.+...-...+...+++|++|+|++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356889999998875422 112 34799999999998754333344556778999999999987422 222
Q ss_pred -hcccCCcEEEecCcccCC--c----ccccCCCCCCEEeccCCCCCC-----CcHHHhccCCCCEEecCCCCCCcccccc
Q 003192 507 -HLLVNLRTLCLDQSVLGD--I----AVIGELKQLEILSLSSSDIEH-----LPREIGRLSKLRLLDLTNCSKLKSIPPN 574 (840)
Q Consensus 507 -~~L~~L~~L~L~~~~l~~--~----~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~c~~l~~lp~~ 574 (840)
...++|++|+|++|.++. . ..+..+++|++|+|++|.|+. ++..+...++|++|+|++|. ++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH-
Confidence 245789999999999865 1 345788999999999999873 45667788899999999964 433211
Q ss_pred ccccccccccCChhhhhcCCCCCeEEEEeecCccC
Q 003192 575 VERLNIERSNASLDELKHLSRLTTLEIHIQGAKIL 609 (840)
Q Consensus 575 l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 609 (840)
......+...++|++|++++|.+...
T Consensus 229 ---------~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 229 ---------LALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp ---------HHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred ---------HHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 01123456778999999999987643
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3.7e-07 Score=94.30 Aligned_cols=168 Identities=8% Similarity=0.080 Sum_probs=104.1
Q ss_pred ccchHHHHHHHHHHhC----CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC---C-C-cEEEEEeCCCccHHHHHHHH
Q 003192 86 FDSRISTFKDITNALS----NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKL---F-D-EVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~vs~~~~~~~~~~~i 156 (840)
+.+|+++++++...|. .+..+.+.|+|++|+|||++|+.+++....... . + .+++++.....+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6799999999887775 556778999999999999999999998854311 1 1 35667777777888999999
Q ss_pred HHHhCCCccc-cChhhHHHHHHHHH--HcCCcEEEEEcccccccCccccCCcc--CCCCC-CcEEEEeeCCcchhhc---
Q 003192 157 ADELGLFLCE-ESESGRARRLYARM--KEEKKILVILDDIWARLDLETLGIPL--GDEHK-GCKVLLTSRSRGVLSR--- 227 (840)
Q Consensus 157 ~~~l~~~~~~-~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~l~~~l--~~~~~-gs~iliTtR~~~v~~~--- 227 (840)
++++...... .........+++.+ ..+++++++||+++...+-+.+...+ +.... ...||.++-..+....
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~ 181 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN 181 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence 9999543211 11222344444443 23567999999997653211111111 11111 1223334433322110
Q ss_pred -----ccCccceEEccCCCHHHHHHHHHHHHh
Q 003192 228 -----EMDSEINFLVGILSQEESWSLFQKMVA 254 (840)
Q Consensus 228 -----~~~~~~~~~l~~L~~~~~~~lf~~~~~ 254 (840)
.+. ...+.+.+++.++-.+++..++.
T Consensus 182 ~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 182 IMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp TCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 111 24689999999999999998863
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=2.9e-08 Score=106.30 Aligned_cols=98 Identities=22% Similarity=0.149 Sum_probs=74.8
Q ss_pred EEEecCC-CCCCCCChhhhcCCCceeEEEecC-CcCCCCc-hhhhcccCCcEEEecCcccCCc--ccccCCCCCCEEecc
Q 003192 466 FFYMYPK-DPALKIPDKFFAGMIELRVLDLTK-MHLLSLP-SSLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEILSLS 540 (840)
Q Consensus 466 ~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~ 540 (840)
.++++++ .+ ..+|. +..+++|++|+|++ |.+..+| ..|..|++|++|+|++|.++.+ ..|++|++|++|+|+
T Consensus 12 ~v~~~~~n~l-~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGAL-DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCC-TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCC-CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 44 45776 77888888888886 8888776 4688888888888888888773 457888888888888
Q ss_pred CCCCCCCcHHHhccCCCCEEecCCCC
Q 003192 541 SSDIEHLPREIGRLSKLRLLDLTNCS 566 (840)
Q Consensus 541 ~~~l~~lp~~i~~L~~L~~L~l~~c~ 566 (840)
+|.|+.+|..+....+|+.|+|.+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 88888887765444448888888753
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.65 E-value=7.3e-08 Score=93.29 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=44.8
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 80 SKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+.....++||+++++++.+.+.....+.|.|+|++|+|||++|+.+++....
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455678999999999999998766678899999999999999999988643
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=3.6e-08 Score=105.59 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=84.4
Q ss_pred EEeeccc-CCCCCCCcC-CCCCceEEEecC-CCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEecC
Q 003192 444 AISLHKC-DVNELPEEL-ECPQLKFFYMYP-KDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQ 519 (840)
Q Consensus 444 ~l~l~~~-~~~~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~ 519 (840)
.++.+++ .+..+|. + .+++|+.|+|++ |.+ ..++...|.++++|++|+|++|.++.+|+ .|.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHL-QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSC-CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCC-CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 8888999 6 889999999996 766 56676679999999999999999997755 789999999999999
Q ss_pred cccCCc-cc-ccCCCCCCEEeccCCCCCCC
Q 003192 520 SVLGDI-AV-IGELKQLEILSLSSSDIEHL 547 (840)
Q Consensus 520 ~~l~~~-~~-i~~L~~L~~L~L~~~~l~~l 547 (840)
|.++.+ +. +..+. |++|+|.+|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999884 33 44454 99999999988844
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=3.3e-07 Score=99.41 Aligned_cols=257 Identities=12% Similarity=0.155 Sum_probs=157.9
Q ss_pred cccEEeecccCCCCCCCcC--CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCc-hhhhcccCCcEEEe
Q 003192 441 FCTAISLHKCDVNELPEEL--ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLP-SSLHLLVNLRTLCL 517 (840)
Q Consensus 441 ~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~L 517 (840)
.+..+.+.+ .+..++... ++ +|+.+.+..+ ...++...|.++ .|+.+.+.. .+..++ .+|.++.+|+.+++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 444555442 344444432 44 6888887655 346666667774 688888876 566665 47888888888888
Q ss_pred cCcccCCc--ccccCCCCCCEEeccCCCCCCCcH-HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCC
Q 003192 518 DQSVLGDI--AVIGELKQLEILSLSSSDIEHLPR-EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLS 594 (840)
Q Consensus 518 ~~~~l~~~--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~ 594 (840)
..|.++.+ ..+. ..+|+.+.+.. +++.++. .+.++++|+.+++.. .+..++.. .|.+ .
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~--------------aF~~-~ 248 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQE--------------AFRE-S 248 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTT--------------TTTT-C
T ss_pred CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccc--------------cccc-C
Confidence 88887774 2344 57888888874 4766654 467788888888875 25555542 2444 5
Q ss_pred CCCeEEEEeecCccCCCcc--ccccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeeccccc
Q 003192 595 RLTTLEIHIQGAKILPRGL--FSKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQD 672 (840)
Q Consensus 595 ~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 672 (840)
+|+.+.+ .+.+..++... .+.+|+.+.+..+... .+....++...+..+++|+.+.+.+ .
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~---------------~~~~~~I~~~aF~~c~~L~~l~l~~--~ 310 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN---------------DDPEAMIHPYCLEGCPKLARFEIPE--S 310 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC---------------CCTTCEECTTTTTTCTTCCEECCCT--T
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc---------------CCcccEECHHHhhCCccCCeEEeCC--c
Confidence 7888887 45566666554 4566777766422100 0111234555666788899988874 2
Q ss_pred chhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccC-CCCCEEEEec
Q 003192 673 VKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASF-CNLGIIKVGN 751 (840)
Q Consensus 673 ~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l-~~L~~L~l~~ 751 (840)
++.++.. ...++++|+.+.|.++ +..+... .+..+ +|+.+.+.+. .+..+.... ...+ .+++.|.+-.
T Consensus 311 i~~I~~~-aF~~c~~L~~l~lp~~--l~~I~~~----aF~~~-~L~~l~l~~n-~~~~l~~~~--F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 311 IRILGQG-LLGGNRKVTQLTIPAN--VTQINFS----AFNNT-GIKEVKVEGT-TPPQVFEKV--WYGFPDDITVIRVPA 379 (401)
T ss_dssp CCEECTT-TTTTCCSCCEEEECTT--CCEECTT----SSSSS-CCCEEEECCS-SCCBCCCSS--CCCSCTTCCEEEECG
T ss_pred eEEEhhh-hhcCCCCccEEEECcc--ccEEcHH----hCCCC-CCCEEEEcCC-CCccccccc--ccCCCCCccEEEeCH
Confidence 4333322 2367889999999653 5555322 33456 8999999874 444443222 2234 3677887765
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=9.9e-09 Score=110.36 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=93.6
Q ss_pred CCCceEEEecCCCCCCCCChh---hhc-CCCceeEEEecCCcCCC--CchhhhcccCCcEEEecCcccCC--cccc----
Q 003192 461 CPQLKFFYMYPKDPALKIPDK---FFA-GMIELRVLDLTKMHLLS--LPSSLHLLVNLRTLCLDQSVLGD--IAVI---- 528 (840)
Q Consensus 461 ~~~L~~L~l~~~~~~~~~~~~---~~~-~l~~L~~L~l~~~~~~~--lp~~i~~L~~L~~L~L~~~~l~~--~~~i---- 528 (840)
.++|++|++++|.+....... .+. ..+.|++|+|++|.+.. +..-...+++|++|+|++|.++. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999998875322211 122 33799999999998863 22233456789999999999876 2333
Q ss_pred -cCCCCCCEEeccCCCCCC-----CcHHHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEE
Q 003192 529 -GELKQLEILSLSSSDIEH-----LPREIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIH 602 (840)
Q Consensus 529 -~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~ 602 (840)
...++|++|+|++|.++. ++..+..+++|++|+|++|. ++.... ......+...++|++|+++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~----------~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGL----------ELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHH----------HHHHHHGGGCSCCCEEECC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHH----------HHHHHHHhcCCCcCeEECC
Confidence 346889999999998873 55666788999999999954 443210 0012345667789999998
Q ss_pred eecCcc
Q 003192 603 IQGAKI 608 (840)
Q Consensus 603 ~~~~~~ 608 (840)
+|.+..
T Consensus 220 ~N~i~~ 225 (372)
T 3un9_A 220 YNGAGD 225 (372)
T ss_dssp SSCCCH
T ss_pred CCCCCH
Confidence 877653
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.54 E-value=5e-07 Score=98.36 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=36.6
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCCCch-hhhcccCCcEEEec
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLD 518 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~ 518 (840)
+|.+|+++.+..+ ...++...|.++.+|+.+++.++ ++.++. .|.++.+|+.+.+.
T Consensus 69 ~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 69 GCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 6778888877533 24566666778888888887654 554543 56666666665554
No 168
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.50 E-value=1.6e-06 Score=89.70 Aligned_cols=181 Identities=15% Similarity=0.204 Sum_probs=104.7
Q ss_pred CCcccccchHHHHHHHHHHhCC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc
Q 003192 81 KGYQAFDSRISTFKDITNALSN-------------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP 147 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 147 (840)
..+..++|.++.++++.+.+.. ...+-|.|+|++|+|||++|+.+++..... .+.++.+...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHH
Confidence 3456788999999988887642 345679999999999999999999876432 2333322211
Q ss_pred cHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc------------C----ccccCCccC--CC
Q 003192 148 DIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL------------D----LETLGIPLG--DE 209 (840)
Q Consensus 148 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~ 209 (840)
. ...+ ........+.......++.+|++||++... . +..+...+. ..
T Consensus 89 ~--------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 K--------------KFIG-EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp C--------------CSTT-HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred H--------------hccc-hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 0000 011223334444444567899999996531 0 111111111 12
Q ss_pred CCCcEEEEeeCCcchhhcc-c---CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHH
Q 003192 210 HKGCKVLLTSRSRGVLSRE-M---DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAG-LPIAIVT 284 (840)
Q Consensus 210 ~~gs~iliTtR~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~ 284 (840)
..+..||.||......... . .-...+.++..+.++..+++...+.......... ...+++.+.| .|-.|..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 3356777777765433111 1 1223689999999999999988753322211212 4567777777 4545544
Q ss_pred H
Q 003192 285 I 285 (840)
Q Consensus 285 ~ 285 (840)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 169
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.49 E-value=2.2e-06 Score=87.89 Aligned_cols=194 Identities=15% Similarity=0.169 Sum_probs=99.5
Q ss_pred cccchHHHHHHHHH-------HhC---CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHH
Q 003192 85 AFDSRISTFKDITN-------ALS---NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 85 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 154 (840)
+++|+...+++++. .+. ....+.|.|+|++|+|||++|+.+++..... .+.++.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~-----~~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP-----FIKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS-----EEEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEeCHHHh-------
Confidence 35565555444444 332 4456789999999999999999999975422 2223222110
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc-----------C-cccc---CCccCCCCCCcEEEEee
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL-----------D-LETL---GIPLGDEHKGCKVLLTS 219 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------~-~~~l---~~~l~~~~~gs~iliTt 219 (840)
.+. ...........+.+.....+..+|++||++... . ++.+ ............||.||
T Consensus 102 -----~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 -----IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -----TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -----cCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 000 000001122333333333567899999987531 0 1111 11111122334566677
Q ss_pred CCcchhhc--ccCc-cceEEccCCCH-HHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCC------hHHHHHHHHHH
Q 003192 220 RSRGVLSR--EMDS-EINFLVGILSQ-EESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGL------PIAIVTIAKAL 289 (840)
Q Consensus 220 R~~~v~~~--~~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~------Plai~~~~~~l 289 (840)
........ .... ...+.+++++. ++-.+++... . .-..+....+++.+.|. +-++..+-...
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~--~------~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL--G------NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH--T------CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc--C------CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 76643321 1111 34688899988 6666666543 1 11245677888888883 33333333322
Q ss_pred hccCHHHHHHHHHHhc
Q 003192 290 REENLFEWKNALLELK 305 (840)
Q Consensus 290 ~~~~~~~w~~~l~~l~ 305 (840)
.......+..+++.+.
T Consensus 247 ~~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 247 QMDPEYRVRKFLALLR 262 (272)
T ss_dssp TSCGGGHHHHHHHHHH
T ss_pred hhchHHHHHHHHHHHH
Confidence 2223345555555543
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=8.4e-07 Score=95.06 Aligned_cols=200 Identities=11% Similarity=0.101 Sum_probs=115.0
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-cEEEEEeCCCccHHHHHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFD-EVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~ 157 (840)
.|.....++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++.......+. .++.++.+.......+.. ..
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 110 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE-KV 110 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTT-HH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHH-HH
Confidence 4566677999999999999998876555589999999999999999998764211111 233444443333332222 11
Q ss_pred HHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCcc-hhhcccCccce
Q 003192 158 DELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSRG-VLSREMDSEIN 234 (840)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~~-v~~~~~~~~~~ 234 (840)
..+............ ......+++-++++|+++... ....+...+.......++|++|.... +..........
T Consensus 111 ~~~~~~~~~~~~~~~----~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 111 KNFARLTVSKPSKHD----LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHHHHSCCCCCCTTH----HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred HHHhhhcccccchhh----cccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 111100000000000 001111345799999987542 12223222222334567777765443 21111122247
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 003192 235 FLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIA 286 (840)
Q Consensus 235 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 286 (840)
+.+.+++.++..+.+...+...+. .-.++..+.|++.++|.|..+..+.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENV---KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 889999999999999887533221 2235678899999999998655443
No 171
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.45 E-value=3.2e-06 Score=92.50 Aligned_cols=184 Identities=14% Similarity=0.161 Sum_probs=109.9
Q ss_pred cccCCcccccchHHHH---HHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC-ccHHHHH
Q 003192 78 TLSKGYQAFDSRISTF---KDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI-PDIKKMQ 153 (840)
Q Consensus 78 ~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~ 153 (840)
..|.....++|++..+ ..+...+..+....|.|+|++|+||||+|+.+++..... ++.++.. ....++
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i- 91 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI- 91 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH-
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH-
Confidence 3566777899999888 677787777777889999999999999999999876432 2222221 222222
Q ss_pred HHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEE-eeCCcc--hhhcc
Q 003192 154 GQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLL-TSRSRG--VLSRE 228 (840)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ili-TtR~~~--v~~~~ 228 (840)
+.++. ........+++.+|++|+++... ..+.+...+.. + ...+|. ||.+.. +....
T Consensus 92 r~~~~----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIE----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHH----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHH----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHH
Confidence 11111 11111123568999999997542 22333222222 1 233443 444432 11111
Q ss_pred cCccceEEccCCCHHHHHHHHHHHHhcCC-C---CCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 003192 229 MDSEINFLVGILSQEESWSLFQKMVAEGD-C---IRNHDLQSLAVAIAKECAGLPIAIVTIAK 287 (840)
Q Consensus 229 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~---~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 287 (840)
.....++.+.+++.++..+++.+.+.... . ....-.++..+.+++.++|.+..+..+..
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 23344788999999999999988754311 1 11223456778889999998876554433
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.44 E-value=4e-07 Score=91.65 Aligned_cols=175 Identities=12% Similarity=0.121 Sum_probs=104.2
Q ss_pred cccccch---HHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHH
Q 003192 83 YQAFDSR---ISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADE 159 (840)
Q Consensus 83 ~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 159 (840)
...|+++ ...++.+..+...+..+.|.|+|++|+||||+|+.+++..... ...+.|++.+...+. +.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~-- 96 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST-- 96 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG--
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH--
Confidence 3455552 3566666666655566889999999999999999999987654 334677765432110 00
Q ss_pred hCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC----ccccCCccCC-CCCC-cEEEEeeCCcch-h----hcc
Q 003192 160 LGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD----LETLGIPLGD-EHKG-CKVLLTSRSRGV-L----SRE 228 (840)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~g-s~iliTtR~~~v-~----~~~ 228 (840)
...+.+ .++.+||+||++.... .+.+...+.. ...+ .++|+||+...- . ...
T Consensus 97 ---------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 97 ---------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp ---------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ---------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 000111 2357899999976422 1212111110 0112 247777764321 0 000
Q ss_pred ---cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 003192 229 ---MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAK 287 (840)
Q Consensus 229 ---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 287 (840)
......+.+.+++.++..+++...+...+. .-..+..+.+++.++|.+..+..+..
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 111257899999999999999887543221 22356778899999998877665443
No 173
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.5e-06 Score=97.80 Aligned_cols=195 Identities=11% Similarity=0.074 Sum_probs=110.1
Q ss_pred cccCCcccccchHHHHHHHHHHhCC-----------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEE
Q 003192 78 TLSKGYQAFDSRISTFKDITNALSN-----------------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVF 140 (840)
Q Consensus 78 ~~~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w 140 (840)
..|.....++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++... + .++.
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~ 107 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILE 107 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEE
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEE
Confidence 3566778899999999999999864 1347899999999999999999999873 2 2445
Q ss_pred EEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHH-HHcCCcEEEEEcccccccC-----ccccCCccCCCCCCcE
Q 003192 141 VDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYAR-MKEEKKILVILDDIWARLD-----LETLGIPLGDEHKGCK 214 (840)
Q Consensus 141 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~ 214 (840)
++.+.......+ ...+.......... .......+. ...+++.+|++|+++.... +..+...+.. .+..
T Consensus 108 in~s~~~~~~~~-~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~ 181 (516)
T 1sxj_A 108 QNASDVRSKTLL-NAGVKNALDNMSVV---GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTP 181 (516)
T ss_dssp ECTTSCCCHHHH-HHTGGGGTTBCCST---TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSC
T ss_pred EeCCCcchHHHH-HHHHHHHhccccHH---HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCC
Confidence 555544433322 22222111100000 000000000 0125678999999976421 1222111111 1233
Q ss_pred EEEeeCCcc--hhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHH
Q 003192 215 VLLTSRSRG--VLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP-IAIVTIA 286 (840)
Q Consensus 215 iliTtR~~~--v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~ 286 (840)
||+++.+.. ...........+.+.+++.++..+.+...+...+...+ .+....|++.++|.+ .++..+.
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 555544322 11111222347899999999999988876543222122 235778899999954 4555543
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=2.6e-06 Score=91.18 Aligned_cols=199 Identities=10% Similarity=0.088 Sum_probs=108.7
Q ss_pred ccCCcccccchHHHHHHHHHHh-CCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCc----------------
Q 003192 79 LSKGYQAFDSRISTFKDITNAL-SNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKL----FDE---------------- 137 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~---------------- 137 (840)
.|.....++|++..++.+..++ ..+..+.+.|+|++|+||||+|+.+++....... ++.
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 4556677899999999999988 6555444999999999999999999986422110 110
Q ss_pred ----EEEEEeCCCc-cHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCC
Q 003192 138 ----VVFVDVPQIP-DIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEH 210 (840)
Q Consensus 138 ----~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~ 210 (840)
.+.+..+... ......+++++.+.....-... . ....+. +++-++|+|++.... ..+.+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~--~ls~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D--SKDGLA-HRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c--cccccC-CCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 1111111100 0000122233222211100000 0 000011 356799999997632 1122222222223
Q ss_pred CCcEEEEeeCCcc-hhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcch-HHHHHHHHHHcCCChHHHHHHH
Q 003192 211 KGCKVLLTSRSRG-VLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDL-QSLAVAIAKECAGLPIAIVTIA 286 (840)
Q Consensus 211 ~gs~iliTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~-~~~~~~i~~~~~G~Plai~~~~ 286 (840)
.+.++|++|.+.. +..........+++.+++.++..+.+...+...+. .-. ++....|++.++|.+..+..+.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI---QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC---CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4677887776643 22211223357899999999999999877532221 112 3567889999999887655544
No 175
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.34 E-value=1.6e-05 Score=84.76 Aligned_cols=184 Identities=11% Similarity=0.134 Sum_probs=105.6
Q ss_pred CCcccccchHHHHHHHHHHhC------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 81 KGYQAFDSRISTFKDITNALS------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
..+..++|++..++.+.+.+. ....+.|.|+|++|+|||++|+.+++..... .+.++.+....
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT-----FFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe-----EEEEehHHhhc
Confidence 445668999999888888763 1235689999999999999999999876422 34444432211
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC-------------ccccCCccC----CCCC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD-------------LETLGIPLG----DEHK 211 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~----~~~~ 211 (840)
. ..+ ........+.......++.+|+||+++.... ...+...+. ....
T Consensus 156 ~--------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 K--------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp S--------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred c--------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 000 0111223333333345679999999954310 111111111 1123
Q ss_pred CcEEEEeeCCcchhhc-cc-CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHHH
Q 003192 212 GCKVLLTSRSRGVLSR-EM-DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAG-LPIAIVTIAK 287 (840)
Q Consensus 212 gs~iliTtR~~~v~~~-~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~ 287 (840)
+..||.||........ .. .....+.+...+.++..+++...+..... .-..+....|++.+.| .+-.|..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC---CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC---CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4556656655432211 11 12246788889999999988876532221 1124567889999998 5555655543
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.34 E-value=8.6e-06 Score=82.96 Aligned_cols=181 Identities=15% Similarity=0.223 Sum_probs=98.6
Q ss_pred cccccchHHHHHHHHHHhC---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHH
Q 003192 83 YQAFDSRISTFKDITNALS---N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIK 150 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 150 (840)
+..++|.+..++.+.+++. . ...+-|.|+|++|+|||++|+.+++..... .+.++.+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh-
Confidence 4557788777666655432 1 233568899999999999999999976432 344444332110
Q ss_pred HHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc-------------C----ccccCCccCC--CCC
Q 003192 151 KMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL-------------D----LETLGIPLGD--EHK 211 (840)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~----~~~l~~~l~~--~~~ 211 (840)
... ........+.+......+.+|++||++... . +..+...+.. ...
T Consensus 79 -------------~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------IGG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------STT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 000 011223334444444567999999997531 0 1111111111 123
Q ss_pred CcEEEEeeCCcchhhcc-c---CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 003192 212 GCKVLLTSRSRGVLSRE-M---DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPI-AIVTI 285 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 285 (840)
+..||.||......... . .-...+.++..+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 55666677654422111 1 12246788999999999999887543221 12222234778888888654 44433
No 177
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.33 E-value=3.1e-06 Score=89.33 Aligned_cols=182 Identities=10% Similarity=0.086 Sum_probs=104.8
Q ss_pred cccCCcccccchHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHH
Q 003192 78 TLSKGYQAFDSRISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 78 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 156 (840)
..|.....++|+++.++.+.+++..+.. .++.+.|++|+|||++|+.+++..... ++.++.+.. ....+ +.+
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~-----~~~i~~~~~-~~~~i-~~~ 92 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNAD-----MMFVNGSDC-KIDFV-RGP 92 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEE-----EEEEETTTC-CHHHH-HTH
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCC-----EEEEccccc-CHHHH-HHH
Confidence 3566677899999999999999886544 577888889999999999999877422 455554432 22222 221
Q ss_pred HHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc---CccccCCccCCCCCCcEEEEeeCCcchh-hcccCcc
Q 003192 157 ADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL---DLETLGIPLGDEHKGCKVLLTSRSRGVL-SREMDSE 232 (840)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iliTtR~~~v~-~~~~~~~ 232 (840)
+........ ..+++.++++||++... ..+.+...+.....+.++|+||....-. .......
T Consensus 93 ~~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 111100000 01367899999997543 2222222222222456777777664321 1111222
Q ss_pred ceEEccCCCHHHHHHHHHH-------HHhcCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 003192 233 INFLVGILSQEESWSLFQK-------MVAEGDCIRNHDLQSLAVAIAKECAGLPIAIV 283 (840)
Q Consensus 233 ~~~~l~~L~~~~~~~lf~~-------~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 283 (840)
..+.+++++.++-.+++.. .+...+... ...+....+++.++|.+..+.
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI--ADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB--SCHHHHHHHHHHTCSCTTHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC--CcHHHHHHHHHhCCCCHHHHH
Confidence 4789999998874433322 211111111 112677888899988776443
No 178
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.30 E-value=7.8e-06 Score=86.83 Aligned_cols=178 Identities=17% Similarity=0.197 Sum_probs=105.0
Q ss_pred ccCCcccccchHHHHHHHHHHhCC-----CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHH
Q 003192 79 LSKGYQAFDSRISTFKDITNALSN-----PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQ 153 (840)
Q Consensus 79 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 153 (840)
.|.....++|++..++++..++.. .....|.|+|++|+|||++|+.+++..... .+.++.+.......+
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~- 97 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDL- 97 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHH-
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHH-
Confidence 345667799999999988888762 344578999999999999999998875432 233333222111111
Q ss_pred HHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCcc------------------CCCCCCc
Q 003192 154 GQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPL------------------GDEHKGC 213 (840)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l------------------~~~~~gs 213 (840)
...... ..+..+|+||++.... ....+...+ ....++.
T Consensus 98 --------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 98 --------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp --------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred --------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 111111 1345788888887541 111110000 0011234
Q ss_pred EEEEeeCCcchhh-ccc-CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 003192 214 KVLLTSRSRGVLS-REM-DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIAK 287 (840)
Q Consensus 214 ~iliTtR~~~v~~-~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 287 (840)
++|.+|....... ... .....+.+.+++.++..+++...+.... ..-..+..+.+++.+.|.|-.+..+..
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~---~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN---KTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT---CEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 5666555433221 111 1225799999999999999987753322 223356778888899999966554443
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=7.4e-06 Score=87.02 Aligned_cols=185 Identities=12% Similarity=0.092 Sum_probs=107.1
Q ss_pred cccCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-cEEEEEeCCCccHHHHHHHH
Q 003192 78 TLSKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFD-EVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 78 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 156 (840)
..|.....++|++..++.+..++..++.+-+.++|++|+||||+|+.+++...... +. .+..++.+.......+.. +
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~ir~-~ 96 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRGIDVVRN-Q 96 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCSHHHHHT-H
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCcccccHHHHHH-H
Confidence 35666777889999999998888877655589999999999999999998865321 11 233344333223322221 1
Q ss_pred HHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCcc-hhhcccCccc
Q 003192 157 ADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSRG-VLSREMDSEI 233 (840)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~~-v~~~~~~~~~ 233 (840)
+..+..... ...+.+-++|+|+++... ..+.+...+......+++|++|.... +.........
T Consensus 97 i~~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 111100000 001236789999986532 22222222222234566776665432 2111112234
Q ss_pred eEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHH
Q 003192 234 NFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIA 281 (840)
Q Consensus 234 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 281 (840)
.+.+.+++.++..+.+...+..... .-.++..+.+++.++|.+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~---~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKL---KLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC---CBCHHHHHHHHHHHTTCHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHH
Confidence 6889999999988888776422221 12245677888888887764
No 180
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.27 E-value=3.9e-05 Score=80.41 Aligned_cols=185 Identities=14% Similarity=0.168 Sum_probs=104.9
Q ss_pred CCcccccchHHHHHHHHHHhC------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 81 KGYQAFDSRISTFKDITNALS------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
..+..+.|.+..++.+.+.+. ....+-|.++|++|+|||++|+.+++..... ..+.++.+.-..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh
Confidence 345668888888877776652 1234689999999999999999999976211 123334332210
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC-------------ccccCCc---cCCCCCC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD-------------LETLGIP---LGDEHKG 212 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~g 212 (840)
...+. .......+.+.....++.+|++|+++.... ...+... +.....+
T Consensus 85 --------------~~~g~-~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 --------------KWLGE-SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp --------------SSCCS-CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred --------------hhhhH-HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 11111 122334444444446789999999975410 0011111 1112344
Q ss_pred cEEEEeeCCcchhhcc--cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHHHHH
Q 003192 213 CKVLLTSRSRGVLSRE--MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGL-PIAIVTIAK 287 (840)
Q Consensus 213 s~iliTtR~~~v~~~~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~~ 287 (840)
..||.||......... -.-...+.++..+.++-.+++..++..... .-.......|++.+.|. +-.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN---SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB---CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5566566544322111 122246788888999999999877432211 11245678899999987 444555543
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.26 E-value=2.7e-06 Score=89.22 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=85.7
Q ss_pred cccchHHHHHHHHHHhC---------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 85 AFDSRISTFKDITNALS---------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
.++|.+..++.+.+++. ......|.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 46788777777765543 233457999999999999999999988754422222223333311
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc-----------cCccccCCccCCCCCCcEEEEe
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR-----------LDLETLGIPLGDEHKGCKVLLT 218 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iliT 218 (840)
+ +.....+.. ......+++.. +..+|++|+++.. .....+...+.....+..||.|
T Consensus 109 -~--------l~~~~~g~~-~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 -D--------LVGQYIGHT-APKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp -G--------TCCSSTTCH-HHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred -H--------hhhhccccc-HHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0 001111111 11122222222 3469999999743 1122232233333456677777
Q ss_pred eCCcchh------hcc-cCccceEEccCCCHHHHHHHHHHHHh
Q 003192 219 SRSRGVL------SRE-MDSEINFLVGILSQEESWSLFQKMVA 254 (840)
Q Consensus 219 tR~~~v~------~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~ 254 (840)
|...... ... ......+.+++++.++-.+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7543210 000 01225789999999999999988754
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.26 E-value=2.4e-05 Score=82.22 Aligned_cols=183 Identities=15% Similarity=0.180 Sum_probs=106.4
Q ss_pred CCcccccchHHHHHHHHHHhC------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 81 KGYQAFDSRISTFKDITNALS------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
..+..++|.+..++.+.+++. ....+-|.++|++|+|||++|+.+++..... .+.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH----
Confidence 446678999999998888772 1123579999999999999999999886432 2233221
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC-------------ccccC---CccCCCCCC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD-------------LETLG---IPLGDEHKG 212 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~---~~l~~~~~g 212 (840)
++. . ...+ ........+.+.....++.+|++|+++.... ...+. ..+.....+
T Consensus 86 --~l~----~----~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 --DLV----S----KWMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp --HHH----T----TTGG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred --HHh----h----cccc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 111 0 0011 1122334444444446678999999975421 11111 111123345
Q ss_pred cEEEEeeCCcchhhccc--CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHH
Q 003192 213 CKVLLTSRSRGVLSREM--DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAG-LPIAIVTIA 286 (840)
Q Consensus 213 s~iliTtR~~~v~~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~ 286 (840)
..||.||.......... .-...+.++..+.++-.+++...+..... .........|++.+.| .+-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666776543321110 12246788889999999999887432211 1124467788888887 454555443
No 183
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.22 E-value=6.7e-06 Score=89.41 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=32.7
Q ss_pred CCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEc
Q 003192 712 DAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVT 776 (840)
Q Consensus 712 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~ 776 (840)
..+.+|+.+.+.+ .++.+. ......+.+|+.+.|.+ +++.+.. ..+.++++|+.+++.
T Consensus 294 ~~~~~L~~i~l~~--~i~~I~--~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKFIG--EEAFESCTSLVSIDLPY--LVEEIGK-RSFRGCTSLSNINFP 351 (394)
T ss_dssp TTCTTCCEEEECT--TCCEEC--TTTTTTCTTCCEECCCT--TCCEECT-TTTTTCTTCCEECCC
T ss_pred ccccccccccccc--ccceec--hhhhcCCCCCCEEEeCC--cccEEhH-HhccCCCCCCEEEEC
Confidence 3456666666643 345443 22233456777777653 4666644 345667777777764
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.21 E-value=1.9e-05 Score=84.92 Aligned_cols=197 Identities=12% Similarity=0.128 Sum_probs=102.6
Q ss_pred cccccchHHHHHH---HHHHhCCCCc--cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe----CCCccHHHHH
Q 003192 83 YQAFDSRISTFKD---ITNALSNPSV--DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV----PQIPDIKKMQ 153 (840)
Q Consensus 83 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~~~~~~ 153 (840)
...|+|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++.......| +.+.. +......+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5678999887665 4555544433 589999999999999999999988643222 22221 1122333333
Q ss_pred HHHHHHh-CC--------------------C-------cccc--ChhhHHHHHH----HH-HHcCC----cEEEEEcccc
Q 003192 154 GQIADEL-GL--------------------F-------LCEE--SESGRARRLY----AR-MKEEK----KILVILDDIW 194 (840)
Q Consensus 154 ~~i~~~l-~~--------------------~-------~~~~--~~~~~~~~l~----~~-l~~~k----~~LlVlDdv~ 194 (840)
.+..... +. . .... .......... .. ...++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3333321 00 0 0000 0011111111 11 11233 3499999997
Q ss_pred ccc--CccccCCccCCCCCCcEEEEeeC-Cc------------chhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCC
Q 003192 195 ARL--DLETLGIPLGDEHKGCKVLLTSR-SR------------GVLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCI 259 (840)
Q Consensus 195 ~~~--~~~~l~~~l~~~~~gs~iliTtR-~~------------~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 259 (840)
... ....+...+...... .++++|. .. .+..........+.+.+++.++..+++...+...+.
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~- 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV- 277 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC-
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 642 122222222222222 3444442 11 110111122235799999999999999887543221
Q ss_pred CCcchHHHHHHHHHHcC-CChHHHHHHH
Q 003192 260 RNHDLQSLAVAIAKECA-GLPIAIVTIA 286 (840)
Q Consensus 260 ~~~~~~~~~~~i~~~~~-G~Plai~~~~ 286 (840)
.-..+....|++.+. |.|..+..+.
T Consensus 278 --~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 278 --EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp --CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 233567788888887 7776554433
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.21 E-value=2.4e-05 Score=82.61 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhCCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCcEEEEEeC---
Q 003192 89 RISTFKDITNALSNPSV-DMIGICGMGGIGKTMLVKEIARQVKGHK--------------------LFDEVVFVDVP--- 144 (840)
Q Consensus 89 r~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs--- 144 (840)
..+..+.+...+..+.. ..+.++|++|+|||++|+.+++...... |+| ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 35556777777776554 5799999999999999999998865331 122 2333221
Q ss_pred CCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc
Q 003192 145 QIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR 222 (840)
Q Consensus 145 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~ 222 (840)
....++.+ +++.+.+.... ..+++-++|+|+++... ..+.+...+.....++.+|++|.+.
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCHHHH-HHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 11222222 23333322110 01457899999997642 2233333333334467777777665
Q ss_pred c-hhhcccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 223 G-VLSREMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 223 ~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
. +..........+.+.+++.++..+.+.+.. .-.++.+..+++.++|.|..+..+
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 332222334579999999999999998772 112456678999999999766543
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=2.1e-06 Score=91.28 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=30.8
Q ss_pred CCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccH---HHhhhcccCcEEEEccc
Q 003192 713 AFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSV---SIARGLQQLQVIDVTEC 778 (840)
Q Consensus 713 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~---~~~~~l~~L~~L~l~~c 778 (840)
.||+|+.|.+.+|..-............+|+|++|+++. +.+.+.-.. ..+.++++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 356666666655432211110011123466777777754 345542110 12245667777777665
No 187
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.18 E-value=1.3e-05 Score=87.83 Aligned_cols=185 Identities=14% Similarity=0.162 Sum_probs=105.4
Q ss_pred ccccc-ch--HHHHHHHHHHhCCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHH
Q 003192 83 YQAFD-SR--ISTFKDITNALSNPS-VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIAD 158 (840)
Q Consensus 83 ~~~~~-gr--~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 158 (840)
+..|+ |. ......+..+...++ ...+.|+|++|+||||||+.+++.......-..+++++.. .+..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHH
Confidence 34455 43 334445555544433 5689999999999999999999987544111124555432 33344444
Q ss_pred HhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC----ccccCCccCC-CCCCcEEEEeeCCcchh-----h--
Q 003192 159 ELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD----LETLGIPLGD-EHKGCKVLLTSRSRGVL-----S-- 226 (840)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~iliTtR~~~v~-----~-- 226 (840)
.+... ....+.+.+. .+.-+|++||++.... .+.+...+.. ...|..||+||....-. .
T Consensus 178 ~~~~~--------~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 178 SMKEG--------KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHTT--------CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHcc--------cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 33221 1122233332 2567999999975432 1122111111 23467788888763211 0
Q ss_pred -cccCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 227 -REMDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 227 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
..+.....+.+++++.++-.+++...+...+...+ +++...|++.++|.+..+..+
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 11222247889999999999999887532221111 345678889999988665443
No 188
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=8.1e-07 Score=82.74 Aligned_cols=65 Identities=6% Similarity=0.089 Sum_probs=44.1
Q ss_pred ccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhh----cccCcEEEEcccccchhh
Q 003192 716 LLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARG----LQQLQVIDVTECKSMEVI 784 (840)
Q Consensus 716 ~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~----l~~L~~L~l~~c~~l~~~ 784 (840)
+|+.|++++|. ++... -.....+++|++|++++|..+++--- ..+.. .++|++|+|++|+++++-
T Consensus 62 ~L~~LDLs~~~-Itd~G--L~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIG--FDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCC-CCGGG--GGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCC-ccHHH--HHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 68888888886 55432 22235688888888888888876421 22333 246888888888877664
No 189
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.17 E-value=5.5e-05 Score=81.82 Aligned_cols=184 Identities=15% Similarity=0.193 Sum_probs=103.5
Q ss_pred cCCcccccchHHHHHHHHHHhC------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc
Q 003192 80 SKGYQAFDSRISTFKDITNALS------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP 147 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 147 (840)
+..+..++|++..++.+.+++. ....+-|.|+|++|+|||++|+.+++..... .+.++.+...
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~-----~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT-----FFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE-----EEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc-----EEEeeHHHhh
Confidence 3456678999999999988872 1224689999999999999999998875422 2333333221
Q ss_pred cHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--------C-----ccccCCcc---CC-CC
Q 003192 148 DIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--------D-----LETLGIPL---GD-EH 210 (840)
Q Consensus 148 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~-----~~~l~~~l---~~-~~ 210 (840)
. .. .+. .......+.......++.+|+||+++... . ...+...+ .. ..
T Consensus 186 ~--~~------------~g~-~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 S--KY------------VGE-GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c--cc------------cch-HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 1 00 000 11223334444444556899999996541 0 00111011 11 12
Q ss_pred CCcEEEEeeCCcchhhc-cc-CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChH-HHHHHH
Q 003192 211 KGCKVLLTSRSRGVLSR-EM-DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPI-AIVTIA 286 (840)
Q Consensus 211 ~gs~iliTtR~~~v~~~-~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 286 (840)
....||.||........ .. .....+.+...+.++-.+++...+.... ..-..+....+++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~---~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG---SPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC---CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23455656655332211 11 1223678888999999999987743221 12234567889999988554 555543
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.16 E-value=8.8e-05 Score=76.99 Aligned_cols=183 Identities=12% Similarity=0.142 Sum_probs=103.2
Q ss_pred CCcccccchHHHHHHHHHHhCC------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 81 KGYQAFDSRISTFKDITNALSN------------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
..+..++|.+..++.+.+++.. ...+.|.|+|++|+||||+|+.+++..... .+.++.+....
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT-----FLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE-----EEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhh
Confidence 3456688999998888887631 234689999999999999999999876422 23344332211
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccCc---------c----ccC---CccCC--CC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLDL---------E----TLG---IPLGD--EH 210 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---------~----~l~---~~l~~--~~ 210 (840)
.... ........+.......++.+|++|+++....- . .+. ...+. .+
T Consensus 93 --------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 --------------KYVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp --------------SSCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred --------------cccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0000 11122333334444456789999999654110 0 010 01111 12
Q ss_pred CCcEEEEeeCCcchhhcc-c-CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChH-HHHHHH
Q 003192 211 KGCKVLLTSRSRGVLSRE-M-DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPI-AIVTIA 286 (840)
Q Consensus 211 ~gs~iliTtR~~~v~~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 286 (840)
.+..||.||......... . .-...+.++..+.++...++...+..... .-..+....+++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566677654322110 0 12245777778888888888776432211 1224567789999999875 554443
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.15 E-value=5.6e-06 Score=79.30 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=44.9
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 80 SKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+.....++||+.+++.+.+.+.....+.|.|+|++|+|||++|+.+++....
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456678999999999999998766778899999999999999999988743
No 192
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1.6e-06 Score=80.81 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=55.6
Q ss_pred ceeEEEecCCcCCC-CchhhhcccCCcEEEecCcc-cCC--cccccCC----CCCCEEeccCC-CCCC-CcHHHhccCCC
Q 003192 488 ELRVLDLTKMHLLS-LPSSLHLLVNLRTLCLDQSV-LGD--IAVIGEL----KQLEILSLSSS-DIEH-LPREIGRLSKL 557 (840)
Q Consensus 488 ~L~~L~l~~~~~~~-lp~~i~~L~~L~~L~L~~~~-l~~--~~~i~~L----~~L~~L~L~~~-~l~~-lp~~i~~L~~L 557 (840)
.|+.||+++|.++. --..+..+++|++|+|++|. +++ +..++.+ ++|++|+|++| +|+. --..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56777777776652 12345677788888888875 555 5556654 46888888887 5772 11236678888
Q ss_pred CEEecCCCCCCcc
Q 003192 558 RLLDLTNCSKLKS 570 (840)
Q Consensus 558 ~~L~l~~c~~l~~ 570 (840)
++|++++|..++.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 8888888877664
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.14 E-value=3.9e-05 Score=81.59 Aligned_cols=183 Identities=16% Similarity=0.177 Sum_probs=103.4
Q ss_pred CCcccccchHHHHHHHHHHhC------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 81 KGYQAFDSRISTFKDITNALS------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
..+..++|.+..++.+.+.+. ....+-|.|+|++|+|||++|+.+++..... .+.++.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH----
Confidence 345668899888888887762 1123468899999999999999999987432 2223221
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC-------------ccccCCcc---CCCCCC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD-------------LETLGIPL---GDEHKG 212 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~g 212 (840)
++.. ...+.. ......+.......++.+|+||+++.... ...+...+ .....+
T Consensus 119 --~l~~--------~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 --DLVS--------KWMGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp --HHHS--------CC---C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred --HHhh--------hhcchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1111 011111 12333444444445789999999975421 11111111 112335
Q ss_pred cEEEEeeCCcchhhcc--cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHH
Q 003192 213 CKVLLTSRSRGVLSRE--MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAG-LPIAIVTIA 286 (840)
Q Consensus 213 s~iliTtR~~~v~~~~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~ 286 (840)
..||.||......... -.-...+.+...+.++-.+++..++..... .-.......|++.+.| .+-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS---VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566666554322110 122346788889999999999877432211 1124457789999988 454555544
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.11 E-value=9.4e-05 Score=81.18 Aligned_cols=184 Identities=16% Similarity=0.201 Sum_probs=104.4
Q ss_pred CCcccccchHHHHHHHHHHhC------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 81 KGYQAFDSRISTFKDITNALS------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
..+..++|.+..++.+.+.+. ....+-|.|+|++|+|||++|+.+++.... .-++.++...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~~- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSSD- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHHH-
Confidence 345668899988888888763 123468999999999999999999997621 1233333221
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC-------------ccccCCccCC---CCCC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD-------------LETLGIPLGD---EHKG 212 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~---~~~g 212 (840)
+... ..+ .. ......+.+.....++.+|++|+++.... ...+...+.. ...+
T Consensus 204 ---l~~~---~~g-----~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 ---LVSK---WLG-----ES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -------------------C-CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ---HHhh---hcc-----hH-HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 1100 011 11 11233444444446789999999975410 0111111111 2345
Q ss_pred cEEEEeeCCcchhhcc-c-CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHHHH
Q 003192 213 CKVLLTSRSRGVLSRE-M-DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGL-PIAIVTIA 286 (840)
Q Consensus 213 s~iliTtR~~~v~~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 286 (840)
..||.||......... . .....+.+...+.++-.++|..++..... .-.......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN---SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE---ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666677654332111 1 22246778888888888888877432211 11245677889999984 44555544
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.08 E-value=4e-05 Score=84.77 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=85.9
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC---C-Cc-EEEEEeCCCccHHHHHH
Q 003192 80 SKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKL---F-DE-VVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---F-~~-~~wv~vs~~~~~~~~~~ 154 (840)
+....+++||+.++++++..+......-+.|+|++|+|||++|+.+++....... . +. ++.++.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 4456679999999999999997665667789999999999999999998743210 1 11 2222322
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcc------hhhcc
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRG------VLSRE 228 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~------v~~~~ 228 (840)
. ...+.. ......+.+.....++.+|++|. ..+....+...+. ....++|.+|.... +-...
T Consensus 246 ---~----~~~g~~-e~~~~~~~~~~~~~~~~iLfiD~--~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 246 ---T----KYRGEF-EDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ---c----cccchH-HHHHHHHHHHHHhcCCeEEEEeC--chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHH
Confidence 0 000110 12234445555545678999991 1111122322222 12345555444433 11111
Q ss_pred cCccceEEccCCCHHHHHHHHHHHH
Q 003192 229 MDSEINFLVGILSQEESWSLFQKMV 253 (840)
Q Consensus 229 ~~~~~~~~l~~L~~~~~~~lf~~~~ 253 (840)
......+.+++.+.++..+++...+
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHH
Confidence 1223368999999999999998663
No 196
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.07 E-value=3.2e-06 Score=80.97 Aligned_cols=106 Identities=9% Similarity=0.120 Sum_probs=61.1
Q ss_pred CCCCceEEEecCC-CCCCCC---ChhhhcCCCceeEEEecCCcCCC-----CchhhhcccCCcEEEecCcccCC------
Q 003192 460 ECPQLKFFYMYPK-DPALKI---PDKFFAGMIELRVLDLTKMHLLS-----LPSSLHLLVNLRTLCLDQSVLGD------ 524 (840)
Q Consensus 460 ~~~~L~~L~l~~~-~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~------ 524 (840)
..++|++|++++| .+...- -...+...+.|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4556666666666 443210 11224556667777777776652 33445555667777777776655
Q ss_pred cccccCCCCCCEEec--cCCCCCC-----CcHHHhccCCCCEEecCCC
Q 003192 525 IAVIGELKQLEILSL--SSSDIEH-----LPREIGRLSKLRLLDLTNC 565 (840)
Q Consensus 525 ~~~i~~L~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~l~~c 565 (840)
...+...++|++|+| ++|.|.. +...+...++|++|++++|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 134555666777777 6666652 3444555566777777664
No 197
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.01 E-value=2.5e-06 Score=81.68 Aligned_cols=116 Identities=13% Similarity=0.125 Sum_probs=87.3
Q ss_pred hhhcCCCceeEEEecCC-cCC-----CCchhhhcccCCcEEEecCcccCC--c----ccccCCCCCCEEeccCCCCCC--
Q 003192 481 KFFAGMIELRVLDLTKM-HLL-----SLPSSLHLLVNLRTLCLDQSVLGD--I----AVIGELKQLEILSLSSSDIEH-- 546 (840)
Q Consensus 481 ~~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~L~~L~~L~L~~~~l~~--~----~~i~~L~~L~~L~L~~~~l~~-- 546 (840)
..+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.. . ..+...++|++|+|++|.|..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34778999999999999 886 245567778999999999999876 2 345667899999999999983
Q ss_pred ---CcHHHhccCCCCEEec--CCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCc
Q 003192 547 ---LPREIGRLSKLRLLDL--TNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 547 ---lp~~i~~L~~L~~L~l--~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 607 (840)
+...+...++|++|++ ++| .++.- +. ......+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~--g~--------~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNN--VE--------MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHH--HH--------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHH--HH--------HHHHHHHHhCCCcCEEeccCCCCC
Confidence 5666778889999999 654 44321 10 011234567789999999988764
No 198
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=8.3e-06 Score=82.06 Aligned_cols=79 Identities=28% Similarity=0.278 Sum_probs=61.8
Q ss_pred cCCCceeEEEecCCcCCCCc---hhhhcccCCcEEEecCcccCCcccccCCC--CCCEEeccCCCCC-CCc-------HH
Q 003192 484 AGMIELRVLDLTKMHLLSLP---SSLHLLVNLRTLCLDQSVLGDIAVIGELK--QLEILSLSSSDIE-HLP-------RE 550 (840)
Q Consensus 484 ~~l~~L~~L~l~~~~~~~lp---~~i~~L~~L~~L~L~~~~l~~~~~i~~L~--~L~~L~L~~~~l~-~lp-------~~ 550 (840)
.++++|+.|+|++|.+..++ ..+..+++|++|+|++|.++.+..+..+. +|++|+|++|.+. .+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 46788899999998888654 56778899999999999988876666665 8999999999887 344 23
Q ss_pred HhccCCCCEEec
Q 003192 551 IGRLSKLRLLDL 562 (840)
Q Consensus 551 i~~L~~L~~L~l 562 (840)
+..+++|+.||=
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678888988864
No 199
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.00 E-value=4.1e-05 Score=80.59 Aligned_cols=170 Identities=14% Similarity=0.133 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCC--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCcccc
Q 003192 90 ISTFKDITNALSNP--SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEE 167 (840)
Q Consensus 90 ~~~~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 167 (840)
......+..+...+ ....+.|+|++|+||||||+.+++..... .+ .+++++. .++...+...+...
T Consensus 20 ~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~---- 87 (324)
T 1l8q_A 20 RLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG---- 87 (324)
T ss_dssp HHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC----
Confidence 33445555555443 34678999999999999999999987543 11 2455543 23333333332110
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEEcccccccC---c-cccCCccCC-CCCCcEEEEeeCCcch-----hh---cccCccce
Q 003192 168 SESGRARRLYARMKEEKKILVILDDIWARLD---L-ETLGIPLGD-EHKGCKVLLTSRSRGV-----LS---REMDSEIN 234 (840)
Q Consensus 168 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~iliTtR~~~v-----~~---~~~~~~~~ 234 (840)
....+.+.+. +..+|++||+..... + +.+...+.. ...|.+||+||....- .. ........
T Consensus 88 ----~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 88 ----TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp ----CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred ----cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 1122233333 357999999976431 1 122111111 1245678887764321 00 01122246
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 003192 235 FLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAI 282 (840)
Q Consensus 235 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 282 (840)
+.+++ +.++..+++...+...+. .-.++....|++.+ |..-.+
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~---~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNL---ELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHC-SSHHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhC-CCHHHH
Confidence 89999 999999999887543222 22356678888888 776543
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.99 E-value=0.00011 Score=76.15 Aligned_cols=176 Identities=11% Similarity=0.224 Sum_probs=99.2
Q ss_pred CcccccchHHHHHHHHHHhCC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 82 GYQAFDSRISTFKDITNALSN-------------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
.+..++|.+..++++.+++.. ...+.|.|+|++|+|||++|+.+++..... ++.++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-------~i~v~---- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK---- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-------EEEEC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-------EEEEE----
Confidence 345678888877777766531 345689999999999999999999876422 22222
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc------------C----ccccCCccC--CCC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL------------D----LETLGIPLG--DEH 210 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~ 210 (840)
..++.... .+.. ......+.+......+.++++|+++... . ...+...+. ...
T Consensus 82 ~~~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPELLTMW---FGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 22222211 1211 1223444454444567999999996421 0 011111111 122
Q ss_pred CCcEEEEeeCCcchhhcc-c---CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHH
Q 003192 211 KGCKVLLTSRSRGVLSRE-M---DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIA 281 (840)
Q Consensus 211 ~gs~iliTtR~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 281 (840)
.+..||.||......... . .-...+.++..+.++-.+++...+.......... ...+++.+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 356677777655332111 1 1234688999999998898877643222111222 23566677777654
No 201
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=4.7e-06 Score=88.67 Aligned_cols=133 Identities=16% Similarity=0.185 Sum_probs=70.3
Q ss_pred CCCCceEEEecCCCCCCCCChhhhcCCCceeEEEecCCcCCC-Cchhhh--cccCCcEEEecCc--c------cCCcc-c
Q 003192 460 ECPQLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMHLLS-LPSSLH--LLVNLRTLCLDQS--V------LGDIA-V 527 (840)
Q Consensus 460 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~--~L~~L~~L~L~~~--~------l~~~~-~ 527 (840)
.+|+|+.|.+.++.. ..++. + .+++|+.|++..+.+.. ....+. .+++|++|+|+.+ . +..+. .
T Consensus 170 ~~P~L~~L~L~g~~~-l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN-LSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBT-CBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCC-ceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 566777777766532 12332 2 26677777777666541 112233 5677777777531 1 11111 1
Q ss_pred c--cCCCCCCEEeccCCCCCC-CcHHHh---ccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEE
Q 003192 528 I--GELKQLEILSLSSSDIEH-LPREIG---RLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEI 601 (840)
Q Consensus 528 i--~~L~~L~~L~L~~~~l~~-lp~~i~---~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l 601 (840)
+ +.+++|++|+|++|.+.. .+..+. .+++|++|+|+.| .++..- . ......+.++++|+.|++
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G--~--------~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEG--A--------RLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHH--H--------HHHHTTHHHHTTCSEEEC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHH--H--------HHHHhhcccCCcceEEEC
Confidence 1 246777777777776652 222232 4667777777663 343210 0 001123456677777777
Q ss_pred EeecCc
Q 003192 602 HIQGAK 607 (840)
Q Consensus 602 ~~~~~~ 607 (840)
+.|.+.
T Consensus 315 ~~n~i~ 320 (362)
T 2ra8_A 315 KYNYLS 320 (362)
T ss_dssp CSBBCC
T ss_pred CCCcCC
Confidence 777654
No 202
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00036 Score=73.79 Aligned_cols=173 Identities=16% Similarity=0.205 Sum_probs=99.7
Q ss_pred cccccchHHHHHHHHHHhC-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALS-------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+.++.|-++.+++|.+.+. -...+-|-++|++|+|||.||+.+++..... .+.++.+.-.+
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s- 220 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ- 220 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc-
Confidence 4556788877777766653 1234678899999999999999999987654 23344332211
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc----------C------ccccCCccC--CCCC
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL----------D------LETLGIPLG--DEHK 211 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~------~~~l~~~l~--~~~~ 211 (840)
...++ ....+..+++......+++|++|+++... + ...+...+. ....
T Consensus 221 -------------k~vGe-se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 -------------KYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp -------------SSTTH-HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred -------------cccch-HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 11111 11233444444555678999999986431 0 001111111 1233
Q ss_pred CcEEEEeeCCcchhhcc----cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 212 GCKVLLTSRSRGVLSRE----MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+..||.||-..+..... ..-...+.++.-+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 45566677665544211 13345788888899888899987642211111122 456778887754
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.89 E-value=5.5e-05 Score=78.22 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCcEEEEEeCC-CccHHHHHHHHHHHhCCCcc
Q 003192 88 SRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGH-KLFDEVVFVDVPQ-IPDIKKMQGQIADELGLFLC 165 (840)
Q Consensus 88 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~ 165 (840)
|.++.++.+...+..+..+.+.++|++|+||||+|+.+++..... .....+.+++.+. ...++++ +++.+.+.....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhccc
Confidence 345566777777776667799999999999999999998863211 1122345555443 3344433 345544432211
Q ss_pred ccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCCCCCCcEEEEeeCCc-chhhcccCccceEEccCCCH
Q 003192 166 EESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGDEHKGCKVLLTSRSR-GVLSREMDSEINFLVGILSQ 242 (840)
Q Consensus 166 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtR~~-~v~~~~~~~~~~~~l~~L~~ 242 (840)
.+++-++|+|+++... ..+.+...+....+.+.+|++|.+. .+... .... .+++.+++.
T Consensus 80 ----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~t-I~SR-~~~f~~l~~ 141 (305)
T 2gno_A 80 ----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPT-IKSR-VFRVVVNVP 141 (305)
T ss_dssp ----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHH-HHTT-SEEEECCCC
T ss_pred ----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHH-HHce-eEeCCCCCH
Confidence 1456899999997642 3344443443334567777776554 33322 3333 899999999
Q ss_pred HHHHHHHHHHH
Q 003192 243 EESWSLFQKMV 253 (840)
Q Consensus 243 ~~~~~lf~~~~ 253 (840)
++..+.+.+.+
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998774
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00021 Score=76.81 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=99.2
Q ss_pred CcccccchHHHHHHHHHHhC----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 82 GYQAFDSRISTFKDITNALS----N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
.+..+.|-++.+++|.+.+. . ...+-|-++|++|+|||.+|+.+++..... .+.++.+.-.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~- 252 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLV- 252 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC-
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhh-
Confidence 45667888888888777643 1 235789999999999999999999987653 2334433211
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc-------C---------ccccCCccCC--CC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL-------D---------LETLGIPLGD--EH 210 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------~---------~~~l~~~l~~--~~ 210 (840)
....+++ ...+..++.......+++|++|+++... . ...+...+.. ..
T Consensus 253 -------------~~~vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 253 -------------QMYIGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp -------------SSCSSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred -------------hcccchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 1111111 1223334443344568999999986320 0 0011111111 22
Q ss_pred CCcEEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 211 KGCKVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 211 ~gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
.+..||.||-..+...... .-...+.++.-+.++-.++|+.+.........-+ ...|++.+.|.-
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 3445666776665442222 2334678888888888888876643222112222 356778887753
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.85 E-value=4e-05 Score=91.69 Aligned_cols=158 Identities=12% Similarity=0.161 Sum_probs=87.0
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccC---CC-C-cEEEEEeCCCccHHHHHH
Q 003192 80 SKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHK---LF-D-EVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F-~-~~~wv~vs~~~~~~~~~~ 154 (840)
+....+++||++++.++++.+.....+-+.++|++|+||||+|+.+++...... .. + .+++++++....
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 455667999999999999999876666788999999999999999999874321 01 1 233443322110
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHc-CCcEEEEEccccccc-------Cccc---cCCccCCCCCCcEEEEeeCCcc
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKE-EKKILVILDDIWARL-------DLET---LGIPLGDEHKGCKVLLTSRSRG 223 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-------~~~~---l~~~l~~~~~gs~iliTtR~~~ 223 (840)
+....+ ........+.+.+.. +++.+|++|++.... .++. +...+ .. .+..+|.+|....
T Consensus 240 ------g~~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 ------GAKYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDE 310 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEECHHH
T ss_pred ------cCccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchH
Confidence 000001 112233444444443 367999999997542 0111 11111 11 2233554444322
Q ss_pred h-----hhcccCccceEEccCCCHHHHHHHHHHH
Q 003192 224 V-----LSREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 224 v-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
. ..........+.+++.+.++..+++...
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 1 1111122235889999999999988754
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.85 E-value=0.00018 Score=85.08 Aligned_cols=153 Identities=15% Similarity=0.158 Sum_probs=86.2
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccC-CC--CcEEEEEeCCCccHHHHHHHH
Q 003192 80 SKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHK-LF--DEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F--~~~~wv~vs~~~~~~~~~~~i 156 (840)
+....+++||++++++++..+......-|.++|++|+|||++|+.+++...... .+ ...-++.++-
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 345667999999999999999766666788999999999999999999863221 01 1111111111
Q ss_pred HHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccCccccCCccCCCCCCcEEEEeeCCcch------hhcccC
Q 003192 157 ADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLDLETLGIPLGDEHKGCKVLLTSRSRGV------LSREMD 230 (840)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iliTtR~~~v------~~~~~~ 230 (840)
+....+.. ......+.+.....++.+|++|. ..+....+...+. ....++|.||..... -.....
T Consensus 245 ----g~~~~G~~-e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 ----GTKYRGEF-EDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ----cccccchH-HHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 11111111 12234445555546678999992 1111122222222 223455555544431 011111
Q ss_pred ccceEEccCCCHHHHHHHHHHH
Q 003192 231 SEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 231 ~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
....+.++..+.++..+++...
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~ 337 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGL 337 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHT
T ss_pred hCcEEEeCCCCHHHHHHHHHHH
Confidence 2246899999999999999865
No 207
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.85 E-value=1.5e-05 Score=75.95 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhCC---CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCcc
Q 003192 89 RISTFKDITNALSN---PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLC 165 (840)
Q Consensus 89 r~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 165 (840)
+.+.++.+.+++.+ .....+.|+|++|+||||||+.+++.......+. ++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~- 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGK- 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCch-
Confidence 44555555555532 2357899999999999999999999876332222 3343 34444444443332110
Q ss_pred ccChhhHHHHHHHHHHcCCcEEEEEccccc--ccCcc--ccCCccCC-CCCCcEEEEeeCCc
Q 003192 166 EESESGRARRLYARMKEEKKILVILDDIWA--RLDLE--TLGIPLGD-EHKGCKVLLTSRSR 222 (840)
Q Consensus 166 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~iliTtR~~ 222 (840)
.. .+.+.+. +.-+|||||++. .+.|. .+...+.. ...|..||+||...
T Consensus 91 ---~~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 ---DT----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ---CS----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ---HH----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 01 2333343 356899999973 22232 11111111 12466788888754
No 208
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.82 E-value=0.0013 Score=66.51 Aligned_cols=181 Identities=15% Similarity=0.224 Sum_probs=94.5
Q ss_pred CCcccccchHHHHHHHHHHh---CC---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 81 KGYQAFDSRISTFKDITNAL---SN---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
..+..++|.+..++++.+.+ .. ...+-|.|+|++|+||||+|+.+++..... .+.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHHHHH
Confidence 34566788877766655543 21 123468899999999999999999876432 23333221110
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC----------------ccccCCccC--CCC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD----------------LETLGIPLG--DEH 210 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 210 (840)
...... ......+.+......+.++++|+++.... ...+...+. ...
T Consensus 84 --------------~~~~~~-~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------------MFVGVG-ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------------SCCCCC-HHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------------Hhhhhh-HHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 001111 12233444444445578999999853210 000100010 112
Q ss_pred CCcEEEEeeCCcchhhcc-c---CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHH
Q 003192 211 KGCKVLLTSRSRGVLSRE-M---DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAG-LPIAIVTI 285 (840)
Q Consensus 211 ~gs~iliTtR~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~ 285 (840)
.+..||.||......... . .-...+.++..+.++-.+++..++......... ....++..+.| .+--|..+
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~----~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI----DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc----cHHHHHHHcCCCCHHHHHHH
Confidence 345666677655432111 1 112467788888888888887663221111111 13456677777 66555443
No 209
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=3.1e-06 Score=85.20 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=72.9
Q ss_pred cCCCceeE--EEecCCcCCCCch----hhhcccCCcEEEecCcccCCccc----ccCCCCCCEEeccCCCCCCCcHHHhc
Q 003192 484 AGMIELRV--LDLTKMHLLSLPS----SLHLLVNLRTLCLDQSVLGDIAV----IGELKQLEILSLSSSDIEHLPREIGR 553 (840)
Q Consensus 484 ~~l~~L~~--L~l~~~~~~~lp~----~i~~L~~L~~L~L~~~~l~~~~~----i~~L~~L~~L~L~~~~l~~lp~~i~~ 553 (840)
...+.|+. ++++.|....++. ...++++|++|+|++|.++.++. ++.+++|++|+|++|.|+.+. .+..
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~ 216 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDK 216 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhh
Confidence 33444554 5566664443333 22578999999999999988543 458999999999999999773 3566
Q ss_pred cC--CCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEE
Q 003192 554 LS--KLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLE 600 (840)
Q Consensus 554 L~--~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~ 600 (840)
+. +|++|+|++|.....+|.. ......-+..+++|+.|+
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~--------~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQ--------STYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSH--------HHHHHHHHHHCTTCCEES
T ss_pred cccCCcceEEccCCcCccccCcc--------hhHHHHHHHHCcccCeEC
Confidence 65 9999999997654445421 001112356788888775
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00093 Score=71.91 Aligned_cols=173 Identities=17% Similarity=0.256 Sum_probs=98.8
Q ss_pred cccccchHHHHHHHHHHhC-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALS-------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+.++.|-++.+++|.+.+. -...+-|-++|++|+|||++|+.+++..... .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc-
Confidence 4556777777777766553 1235789999999999999999999987654 23444333211
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--------C--------ccccCCccC--CCCC
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--------D--------LETLGIPLG--DEHK 211 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~ 211 (840)
...++ ....+..++.......+++|++|+++... . +..+...+. ....
T Consensus 254 -------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 -------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp -------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred -------------ccchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 11111 11223344444444678999999986431 0 001111111 1233
Q ss_pred CcEEEEeeCCcchhhccc-C---ccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 212 GCKVLLTSRSRGVLSREM-D---SEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+..||.||-......... . -...+.++.-+.++-.++|+.+...-......+ ...+++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 456777776655442221 1 234678888888888888887643222222222 356677777754
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00098 Score=70.75 Aligned_cols=174 Identities=15% Similarity=0.183 Sum_probs=97.6
Q ss_pred CcccccchHHHHHHHHHHhC----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 82 GYQAFDSRISTFKDITNALS----N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
.+.++.|-++.+++|.+.+. . ...+-|-++|++|+|||.+|+.+++..... .+.++.+.-.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~- 253 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELI- 253 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGC-
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhh-
Confidence 35556777777777766553 1 235789999999999999999999987654 2333332211
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC----------------ccccCCccC--CCC
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD----------------LETLGIPLG--DEH 210 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 210 (840)
....++ ....+..+++......+++|++|+++.... +..+...+. ...
T Consensus 254 -------------sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 254 -------------QKYLGD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp -------------CSSSSH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred -------------hccCch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 111111 112334444444456789999999864310 001111111 123
Q ss_pred CCcEEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 211 KGCKVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 211 ~gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
.+..||.||-..+...... .-...+.++.-+.++-.++|+.+........+.+ ...|++.+.|.-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 3455666776655442222 2233577888888888888877642222112222 356677777753
No 212
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.78 E-value=0.0011 Score=71.83 Aligned_cols=287 Identities=11% Similarity=0.131 Sum_probs=125.9
Q ss_pred CceEEEecCCCCCCCCChhhhcCCCceeEEEecCCc---CCCCch-hhhcccCCcEEEecCcccCCc--ccccCCCCCCE
Q 003192 463 QLKFFYMYPKDPALKIPDKFFAGMIELRVLDLTKMH---LLSLPS-SLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEI 536 (840)
Q Consensus 463 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~lp~-~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~ 536 (840)
.|+++.+..+ ...+....|.++.+|+.+.++.+. ++.++. +|..+.+|+.+.+..+ ++.+ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 4666666432 234555566777777777776543 444433 5556666665555433 2221 33556666666
Q ss_pred EeccCCCCCCCc-HHHhccCCCCEEecCCCCCCccccccc------ccccccc--ccCChhhhhcCCCCCeEEEEeecCc
Q 003192 537 LSLSSSDIEHLP-REIGRLSKLRLLDLTNCSKLKSIPPNV------ERLNIER--SNASLDELKHLSRLTTLEIHIQGAK 607 (840)
Q Consensus 537 L~L~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~l------~~L~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~ 607 (840)
+.+..+ ++.++ ..+..+.+|+.+.+.. .+..+.... ..+.+.. .......+..+.+|.......+...
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred ccccce-eeeecccceecccccccccccc--eeeEeccccccccceeEEEECCcccccccchhhhccccceecccccccc
Confidence 666543 33332 2245556666665543 122222110 0000000 0001122334444554444332222
Q ss_pred cCCCccc-cccCcEEEEEEcCcCCcCCCCCCccEEEEeecCcccchhhHHHhhcccceeeecccccchhhcccccccccC
Q 003192 608 ILPRGLF-SKKLERYKILIGDEWDWHGKYETSRTLKLMLNTRTCLENGTIMQLKGIEDLYLGELQDVKNVLNELDAEGFL 686 (840)
Q Consensus 608 ~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~ 686 (840)
.....+. ........+.. ...........+- +.........+..+.+|+.+.+.... ..+.. ....+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~--~~I~~-~aF~~c~ 288 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIR------YPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV--VSIGT-GAFMNCP 288 (394)
T ss_dssp BSSSCEEEECTTSCEEEEE------CCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC--CEECT-TTTTTCT
T ss_pred cccceeecccccccccccc------cccccccceEEcC-CcceEcccceeeecccccEEeccccc--ceecC-ccccccc
Confidence 2211110 00000000000 0000011111110 11222333344556666766664321 11111 1124566
Q ss_pred CCcEEEeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhh
Q 003192 687 QLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARG 766 (840)
Q Consensus 687 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~ 766 (840)
+|+.+.+.. .+..+... .+..+.+|+.+.|.. .++.+.. .....+.+|+.+.|-+ +++.+.. ..+.+
T Consensus 289 ~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~--~aF~~C~~L~~i~ip~--sv~~I~~-~aF~~ 355 (394)
T 4gt6_A 289 ALQDIEFSS--RITELPES----VFAGCISLKSIDIPE--GITQILD--DAFAGCEQLERIAIPS--SVTKIPE-SAFSN 355 (394)
T ss_dssp TCCEEECCT--TCCEECTT----TTTTCTTCCEEECCT--TCCEECT--TTTTTCTTCCEEEECT--TCCBCCG-GGGTT
T ss_pred ccccccCCC--cccccCce----eecCCCCcCEEEeCC--cccEehH--hHhhCCCCCCEEEECc--ccCEEhH-hHhhC
Confidence 777777743 34444221 334566777777753 3555532 2334566777777753 4666644 34567
Q ss_pred cccCcEEEEccc
Q 003192 767 LQQLQVIDVTEC 778 (840)
Q Consensus 767 l~~L~~L~l~~c 778 (840)
+++|+.+++.+.
T Consensus 356 C~~L~~i~~~~~ 367 (394)
T 4gt6_A 356 CTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEESSC
T ss_pred CCCCCEEEECCc
Confidence 777777777653
No 213
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.0008 Score=72.19 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=98.0
Q ss_pred cccccchHHHHHHHHHHhC-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALS-------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+..+.|-++.+++|.+.+. -...+-|-++|++|+|||++|+.+++..... .+.++.+.-.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~-- 280 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELV-- 280 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC--
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhh--
Confidence 4457788877777776542 1346789999999999999999999987654 2334333211
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC----------------ccccCCccC--CCCC
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD----------------LETLGIPLG--DEHK 211 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~ 211 (840)
....++ ....+..++.......+++|++|+++.... ...+...+. ....
T Consensus 281 ------------sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 ------------QKYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------CCSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------cccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111111 112333444444446789999999864310 000111111 1223
Q ss_pred CcEEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 212 GCKVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+..||.||-......... .-...+.++.-+.++-.++|+.+...-.....-. ...|++.+.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 445566665554432111 2345788888888888899987642221111222 356778887753
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.0011 Score=71.34 Aligned_cols=173 Identities=17% Similarity=0.219 Sum_probs=93.5
Q ss_pred cccccchHHHHHHHHHHhC-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALS-------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+.++.|-++.+++|.+.+. -...+-|-++|++|+|||++|+.+++..... .+.++.+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc-
Confidence 4557788888777776653 1235679999999999999999999987643 23444333211
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--------C--------ccccCCccC--CCCC
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--------D--------LETLGIPLG--DEHK 211 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~ 211 (840)
...+. ....+..+++......++++++|+++... . +..+...+. ....
T Consensus 245 -------------~~~Ge-~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 -------------KYLGE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp -------------SSCSH-HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred -------------cccch-hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 11111 11233444444444678999999986321 0 001111111 1234
Q ss_pred CcEEEEeeCCcchhhcc-c---CccceEEccCCC-HHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 212 GCKVLLTSRSRGVLSRE-M---DSEINFLVGILS-QEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~-~---~~~~~~~l~~L~-~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+..||.||-..+..... . .-...+.+..+. .++-.++|+.+..........+ ...+++.+.|.-
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 55666677665443211 1 222356676564 4555566665532222112222 356777777753
No 215
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.73 E-value=1.6e-05 Score=72.64 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=33.6
Q ss_pred cccchHHHHHHHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 85 AFDSRISTFKDITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+++|+...+.++.+.+. .....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46788888888887764 1222457899999999999999998864
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.71 E-value=0.00011 Score=71.32 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhCCC----CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCcc
Q 003192 90 ISTFKDITNALSNP----SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLC 165 (840)
Q Consensus 90 ~~~~~~l~~~l~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 165 (840)
...++.+.+++... ....|.|+|++|+|||+||+.+++..... ...++|++++ ++...+......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc---
Confidence 34555566665422 12689999999999999999999987644 3346666543 344444332211
Q ss_pred ccChhhHHHHHHHHHHcCCcEEEEEcccccc--cCccc--cCC-ccCCC-CCCcEEEEeeCCc
Q 003192 166 EESESGRARRLYARMKEEKKILVILDDIWAR--LDLET--LGI-PLGDE-HKGCKVLLTSRSR 222 (840)
Q Consensus 166 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~--l~~-~l~~~-~~gs~iliTtR~~ 222 (840)
.. ...+.+.+.+ .-+|||||++.. ..|.. +.. .+... ..+.++|+||...
T Consensus 104 -~~----~~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 -QT----MNEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp -CC----CHHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred -ch----HHHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 11 1223334442 239999999643 33322 211 11111 2355688887753
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.70 E-value=0.00032 Score=83.00 Aligned_cols=158 Identities=13% Similarity=0.178 Sum_probs=92.5
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCcEEEE-EeCCCccHHHHHH
Q 003192 80 SKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKL----FDEVVFV-DVPQIPDIKKMQG 154 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv-~vs~~~~~~~~~~ 154 (840)
+.....++||+.++.++++.|......-+.|+|++|+|||++|+.+++....... .+..+|. +++...
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------- 254 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------- 254 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred cCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-------
Confidence 3455678999999999999998766677899999999999999999987643211 2333332 211110
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--------C---ccccCCccCCCCCCcEEEEeeCCcc
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--------D---LETLGIPLGDEHKGCKVLLTSRSRG 223 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~---~~~l~~~l~~~~~gs~iliTtR~~~ 223 (840)
.+.... .........+.+.+...++.+|++|+++... . ...+...+. ..+.++|.+|....
T Consensus 255 -----~~~~~~-g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 255 -----AGTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQE 326 (758)
T ss_dssp -----CCCCCS-SCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHH
T ss_pred -----cccccc-chHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchH
Confidence 000111 1112234445555554557999999997541 1 111222222 22445666555432
Q ss_pred hh------hcccCccceEEccCCCHHHHHHHHHHH
Q 003192 224 VL------SREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 224 v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
.. .........+.+++.+.++..+++...
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 11 001112236889999999998888765
No 218
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.67 E-value=0.00085 Score=72.63 Aligned_cols=309 Identities=13% Similarity=0.129 Sum_probs=157.4
Q ss_pred CCChhhhcCCC-ceeEEEecCCcCCCCc-hhhhcccCCcEEEecCcc---cCCc--ccccCCCCCCEEeccCCCCCCCcH
Q 003192 477 KIPDKFFAGMI-ELRVLDLTKMHLLSLP-SSLHLLVNLRTLCLDQSV---LGDI--AVIGELKQLEILSLSSSDIEHLPR 549 (840)
Q Consensus 477 ~~~~~~~~~l~-~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~---l~~~--~~i~~L~~L~~L~L~~~~l~~lp~ 549 (840)
.+.+..|.+++ .|+.+.+..+ ++.+. .+|.++.+|+.+.+..+. ++.+ ..|..+.+|+.+.+..+ ++.++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 44555687875 5999999764 66665 488999999999998875 4443 45777888888877654 555543
Q ss_pred -HHhccCCCCEEecCCCCCCccccccccccccccccCChhhhhcCCCCCeEEEEeecCccCCCcc-ccccCcEEEEEEcC
Q 003192 550 -EIGRLSKLRLLDLTNCSKLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQGAKILPRGL-FSKKLERYKILIGD 627 (840)
Q Consensus 550 -~i~~L~~L~~L~l~~c~~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~ 627 (840)
.+..+.+|+.+.+.. .+..++.. .+..+.+|+.+.+.. .+..+.... ...+|+++.+....
T Consensus 131 ~aF~~c~~L~~i~lp~--~~~~I~~~--------------~F~~c~~L~~i~~~~-~~~~I~~~aF~~~~l~~i~ip~~~ 193 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE--GVTSVADG--------------MFSYCYSLHTVTLPD-SVTAIEERAFTGTALTQIHIPAKV 193 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTT--------------TTTTCTTCCEEECCT-TCCEECTTTTTTCCCSEEEECTTC
T ss_pred hhhhhhcccccccccc--eeeeeccc--------------ceecccccccccccc-eeeEeccccccccceeEEEECCcc
Confidence 357788899988864 23444432 255667777766642 233333332 22345555542111
Q ss_pred ---cCCcCCCCCCccEEEEeecCcccchhhHHH-------------hhcccceeeecccccchhhcccccccccCCCcEE
Q 003192 628 ---EWDWHGKYETSRTLKLMLNTRTCLENGTIM-------------QLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHL 691 (840)
Q Consensus 628 ---~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~-------------~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L 691 (840)
.......+..+................... ....+..+.+.. .+..+.. ....++.+|+.+
T Consensus 194 ~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~-~aF~~c~~L~~i 270 (394)
T 4gt6_A 194 TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIET-HAFDSCAYLASV 270 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECT-TTTTTCSSCCEE
T ss_pred cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC--cceEccc-ceeeecccccEE
Confidence 000111222233222221111110000000 001111111111 1111111 112445667777
Q ss_pred EeecCCCcceeecCCCCccCCCCCccceeccccccccccccccccCcccCCCCCEEEEecCCCCcccccHHHhhhcccCc
Q 003192 692 HVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRLTAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQ 771 (840)
Q Consensus 692 ~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~ 771 (840)
.+.+. +..+. ...+..+++|+.+.+. ..++.+... ....+.+|+.+.|.. +++.+.. ..+.++++|+
T Consensus 271 ~lp~~--~~~I~----~~aF~~c~~L~~i~l~--~~i~~I~~~--aF~~c~~L~~i~lp~--~v~~I~~-~aF~~C~~L~ 337 (394)
T 4gt6_A 271 KMPDS--VVSIG----TGAFMNCPALQDIEFS--SRITELPES--VFAGCISLKSIDIPE--GITQILD-DAFAGCEQLE 337 (394)
T ss_dssp ECCTT--CCEEC----TTTTTTCTTCCEEECC--TTCCEECTT--TTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCC
T ss_pred ecccc--cceec----CcccccccccccccCC--CcccccCce--eecCCCCcCEEEeCC--cccEehH-hHhhCCCCCC
Confidence 66442 22221 1133456677777774 345555422 334567888888864 4777654 3467788888
Q ss_pred EEEEcccccchhhccccccccccchhhcccccccccccccccccccCcccccccceeecC
Q 003192 772 VIDVTECKSMEVILGTEEERISSNQEIELITPRGIQKCSLTAEAATNEITFSKLKSLSLS 831 (840)
Q Consensus 772 ~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~ 831 (840)
.+.|-. +++.+... ...++.+|+.+.+.++.... ..+..+.+|+.+.+.
T Consensus 338 ~i~ip~--sv~~I~~~------aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 338 RIAIPS--SVTKIPES------AFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp EEEECT--TCCBCCGG------GGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred EEEECc--ccCEEhHh------HhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 888843 34444222 23456667777776654321 233445666666553
No 219
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.63 E-value=0.00023 Score=74.27 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhCC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 85 AFDSRISTFKDITNALSN--------------PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|++..++.+...+.. .....|.|+|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 377888888888776643 1245688999999999999999998874
No 220
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.63 E-value=0.0021 Score=67.55 Aligned_cols=176 Identities=20% Similarity=0.212 Sum_probs=94.8
Q ss_pred cCCcccccchHHHHHHHHHHhCC-----CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHH
Q 003192 80 SKGYQAFDSRISTFKDITNALSN-----PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQG 154 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 154 (840)
+.....++|++..++.+-..+.. .....+.|+|++|+||||||+.+++..... | ...+.+-.....++
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~~~sg~~~~~~~~l-- 93 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---HVTSGPVLVKQGDM-- 93 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---EEEETTTCCSHHHH--
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEechHhcCHHHH--
Confidence 44566688888777776665542 234679999999999999999999987532 1 11111111111111
Q ss_pred HHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--CccccCCccCC--------CC----------CCcE
Q 003192 155 QIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--DLETLGIPLGD--------EH----------KGCK 214 (840)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~--------~~----------~gs~ 214 (840)
..+...+ .++.++++|++.... ..+.+...+.. .+ +...
T Consensus 94 -------------------~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 94 -------------------AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -------------------HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -------------------HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1111111 234566777765421 11111000000 00 1122
Q ss_pred EE-EeeCCcchhhcc-cCccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 003192 215 VL-LTSRSRGVLSRE-MDSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTIA 286 (840)
Q Consensus 215 il-iTtR~~~v~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 286 (840)
++ .|++...+.... ......+.+++.+.++-.+++.+.+...+ .....+.+..|++.+.|.|..+..+.
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~---~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD---VEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 22 344433321110 11123578999999999999988753221 23346678999999999997654433
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.57 E-value=0.0015 Score=71.46 Aligned_cols=173 Identities=17% Similarity=0.269 Sum_probs=94.5
Q ss_pred cccccchHHHHHHHHHHhC---CC---------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHH
Q 003192 83 YQAFDSRISTFKDITNALS---NP---------SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIK 150 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 150 (840)
+..+.|.++.++++.+... .+ ..+-|.|+|++|+|||+||+.+++..... .+.++.+.....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH-
Confidence 4557787776666555432 21 12458899999999999999999976532 233443322110
Q ss_pred HHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC----------------ccccCCccC--CCCCC
Q 003192 151 KMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD----------------LETLGIPLG--DEHKG 212 (840)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~g 212 (840)
..+. .......+++......+.+|+||+++.... +..+...+. ....+
T Consensus 89 -------------~~g~-~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 -------------FVGV-GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp -------------CTTH-HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred -------------Hhcc-cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0000 112233444444446789999999965310 111111111 11235
Q ss_pred cEEEEeeCCcchhhcc-cC---ccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 213 CKVLLTSRSRGVLSRE-MD---SEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 213 s~iliTtR~~~v~~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
..||.||...+..... .. -...+.++..+.++-.++++.++.......... ...+++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 5677777766543211 11 223678888888888888876642211111111 345778888876
No 222
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.57 E-value=6.2e-05 Score=76.83 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=33.3
Q ss_pred cccccchHHHHHHHHHHhC---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 83 YQAFDSRISTFKDITNALS---N---------PSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+..++|.+..++.+.+.+. . ...+-|.|+|++|+|||++|+.+++....
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3456676655555554432 1 11234789999999999999999998753
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=0.00028 Score=73.68 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=58.9
Q ss_pred ccchHHHHHHHHHHhCCC---------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHH
Q 003192 86 FDSRISTFKDITNALSNP---------SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 156 (840)
++|++..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++.+....... .
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~----~ 92 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA----V 92 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH----H
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc----H
Confidence 668887877777766521 13579999999999999999999987533 12345565544332211 1
Q ss_pred HHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccc
Q 003192 157 ADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWAR 196 (840)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 196 (840)
...++....... ......+...+.....-+++||+++..
T Consensus 93 ~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 93 SRLIGAPPGYVG-YEEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp HHHHCCCTTSTT-TTTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred HHhcCCCCcccc-ccccchHHHHHHhCCCeEEEEeChhhc
Confidence 111222111000 000012233333344579999999754
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.44 E-value=0.0013 Score=72.38 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=36.2
Q ss_pred cccccchHHHHHHHHHH---hCCC--CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 83 YQAFDSRISTFKDITNA---LSNP--SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~---l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+.+++|+++.++.+..+ +..+ ..+-|.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 45688998887755443 3333 235788999999999999999999875
No 225
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.40 E-value=0.0012 Score=72.89 Aligned_cols=180 Identities=14% Similarity=0.240 Sum_probs=100.0
Q ss_pred CcccccchHHHHHHHHHHhC-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 82 GYQAFDSRISTFKDITNALS-------------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
.+..++|.+..++++.+++. ....+-|.|+|++|+|||++|+.+++..... .+.++.+
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~-----fv~vn~~---- 272 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP---- 272 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE-----EEEEEHH----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC-----EEEEEch----
Confidence 45668899998888888764 1334578999999999999999998875321 2333321
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC-------------ccccCCccC--CCCCCc
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD-------------LETLGIPLG--DEHKGC 213 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~gs 213 (840)
++ .. ...+. .......+++....+++.+|+||+++.... ...+...+. ....+.
T Consensus 273 --~l----~~----~~~g~-~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 273 --EI----MS----KLAGE-SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp --HH----HT----SCTTH-HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred --Hh----hh----hhcch-hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 11 10 00111 112233344444446788999999953210 011111111 122345
Q ss_pred EEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHHH
Q 003192 214 KVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGL-PIAIVTI 285 (840)
Q Consensus 214 ~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~ 285 (840)
+||.||.......... .-...+.+...+.++-.+++..++.......... ..++++.+.|. +-.+..+
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 6666666553221111 1223688999999999999987742211111222 35566777774 4444443
No 226
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.21 E-value=0.0025 Score=65.50 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
.+.+.++|++|+|||+||+.+++....
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468889999999999999999998853
No 227
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.16 E-value=0.0042 Score=66.73 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=8.3
Q ss_pred CChhhhcCCCceeEEEec
Q 003192 478 IPDKFFAGMIELRVLDLT 495 (840)
Q Consensus 478 ~~~~~~~~l~~L~~L~l~ 495 (840)
+++..|.++.+|+.++|.
T Consensus 60 Ig~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 60 IGEANFNSCYNMTKVTVA 77 (379)
T ss_dssp ECTTTTTTCTTCCEEEEC
T ss_pred hHHHHhhCCCCCCEEEeC
Confidence 333344445555555443
No 228
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.11 E-value=0.0019 Score=72.64 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=74.6
Q ss_pred ccchHHHHHHHHHHhC------CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHH
Q 003192 86 FDSRISTFKDITNALS------NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADE 159 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 159 (840)
++|.++..+.+.+.+. ......+.++|++|+||||+|+.++...... | ..++++...+..++.......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~---~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK--F---VRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE--E---EEECCCC--------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--e---EEEEecccchhhhhhhHHHHH
Confidence 5676666655544332 2245689999999999999999999987432 2 223333322222221111111
Q ss_pred hCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC------ccccCCccCCC---------------CCCcEEEEe
Q 003192 160 LGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD------LETLGIPLGDE---------------HKGCKVLLT 218 (840)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~~---------------~~gs~iliT 218 (840)
.+. . ............ ...-++++|+++.... ...+...+... .....||.|
T Consensus 158 ig~-----~-~~~~~~~~~~a~-~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 158 VGA-----M-PGRIIQGMKKAG-KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp ------------CHHHHHHTTC-SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred hcc-----C-chHHHHHHHHhh-ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 111 0 011111122111 2345888999875411 12222222110 023456666
Q ss_pred eCCcchhh-cccCccceEEccCCCHHHHHHHHHHH
Q 003192 219 SRSRGVLS-REMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 219 tR~~~v~~-~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
|....... ........+.+.+++.++-.+++..+
T Consensus 231 tN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~ 265 (543)
T 3m6a_A 231 ANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDH 265 (543)
T ss_dssp CSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHT
T ss_pred cCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHH
Confidence 65543221 11112246788999988888887765
No 229
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.10 E-value=5.3e-05 Score=68.86 Aligned_cols=45 Identities=4% Similarity=0.056 Sum_probs=31.5
Q ss_pred cccchHHHHHHHHHHhCC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 85 AFDSRISTFKDITNALSN--PSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+++|+...++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 467887777777776641 222457799999999999999987643
No 230
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.02 E-value=0.006 Score=61.91 Aligned_cols=149 Identities=14% Similarity=0.273 Sum_probs=80.9
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc-
Q 003192 83 YQAFDSRISTFKDITNALS----N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD- 148 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~- 148 (840)
+.++.|-++.++++.+.+. . .-.+-|.++|++|+||||||+.++..... ..+++..+...+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 4456676666666665432 0 11233999999999999999999987653 234444332211
Q ss_pred -HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC---------c----cccCCccCC--CCCC
Q 003192 149 -IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD---------L----ETLGIPLGD--EHKG 212 (840)
Q Consensus 149 -~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~----~~l~~~l~~--~~~g 212 (840)
..+. ...+..+.+......+.++++|+++.... . ..+...+.. ....
T Consensus 84 ~~~~~-----------------~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 84 YVGES-----------------ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp TTHHH-----------------HHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred hhhHH-----------------HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 0110 11223333333234578999999864210 0 001011111 1234
Q ss_pred cEEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHH
Q 003192 213 CKVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMV 253 (840)
Q Consensus 213 s~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~ 253 (840)
.-++.+|....+..... .-...+.++.-+.++-.++++...
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 45666777766552211 233467888888888888888763
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.96 E-value=0.0049 Score=71.55 Aligned_cols=173 Identities=14% Similarity=0.239 Sum_probs=92.0
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALS----N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+.++.|-++.+++|.+++. . ...+-|.++|++|+|||+||+.+++..... .+.|+.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhH-----
Confidence 3345566555555554432 1 235689999999999999999999876533 2334322
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc--------Cc-----cccCCccC--CCCCCcE
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL--------DL-----ETLGIPLG--DEHKGCK 214 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~~-----~~l~~~l~--~~~~gs~ 214 (840)
++ . + ...++ .......+++......+.+|++|+++... +. ..+...+. ....+..
T Consensus 273 -~l----~---s-k~~ge-se~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 -EI----M---S-KLAGE-SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -HH----H---S-SCTTH-HHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -Hh----h---c-ccchH-HHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 1 0 11111 11233444555555678999999987531 00 01111110 0122334
Q ss_pred EEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 215 VLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 215 iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
||.||...+...... .-...+++..-+.++-.++|+.+........+.+ ...|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 555555543332111 2234688888888888888876632111111222 456788888764
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.94 E-value=0.0099 Score=59.64 Aligned_cols=149 Identities=15% Similarity=0.216 Sum_probs=76.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcE
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKI 186 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 186 (840)
-|.|+|++|+||||||+.++..... ..+.++. .++ .... .. ........+.+........
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~------~~~----~~~~----~~-~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARV-----PFITASG------SDF----VEMF----VG-VGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEH------HHH----HHSC----TT-HHHHHHHHHHHHHTTSSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeH------HHH----HHHH----hh-HHHHHHHHHHHHHHhcCCe
Confidence 3899999999999999999987652 1233321 111 1100 00 0011223344443333468
Q ss_pred EEEEcccccccC----------------ccccCCccCCC--CCCcEEEEeeCCcchhhccc----CccceEEccCCCHHH
Q 003192 187 LVILDDIWARLD----------------LETLGIPLGDE--HKGCKVLLTSRSRGVLSREM----DSEINFLVGILSQEE 244 (840)
Q Consensus 187 LlVlDdv~~~~~----------------~~~l~~~l~~~--~~gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~ 244 (840)
++++|+++.... ...+...+..+ .....++.||....+..... .-...+.++..+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 999999953210 11111111111 22334555666665542211 123467888888888
Q ss_pred HHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 245 SWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 245 ~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
-.++++..+.......... ...+++.+.|.-
T Consensus 191 r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 191 REQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 8888876632111111111 345667777643
No 233
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.89 E-value=0.0083 Score=61.16 Aligned_cols=174 Identities=13% Similarity=0.188 Sum_probs=88.0
Q ss_pred CcccccchHHHHHHHHHHhC---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 82 GYQAFDSRISTFKDITNALS---N---------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
.+..++|.++.++++.+... . .-.+-|.|+|++|+||||||+.++..... ..+.++..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH-----
Confidence 34557777665555444321 1 01123899999999999999999987652 23333211
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccccc------------C----ccccCCccCCC--CC
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARL------------D----LETLGIPLGDE--HK 211 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~--~~ 211 (840)
++. ... .. ........+.+......+.++++|+++... . ...+...+..+ ..
T Consensus 108 -~~~----~~~----~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -DFV----EMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -HHH----HST----TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -HHH----HHH----hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 111 100 00 001122334444433456899999995320 0 01111112211 12
Q ss_pred CcEEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 212 GCKVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
...++.||....+..... .-...+.++..+.++-.+++...+......... ....++..+.|..
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~----~~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc----CHHHHHHHcCCCC
Confidence 234555666655542111 223468888888888888887663211111111 1345667777754
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.89 E-value=0.0013 Score=77.78 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=42.1
Q ss_pred cccchHHHHHHHHHHhCC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC
Q 003192 85 AFDSRISTFKDITNALSN-------P--SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ 145 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 145 (840)
.++|.+..++.+...+.. + ....+.++|++|+|||++|+.+++..... -...+.++++.
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~ 559 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSE 559 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGG
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechh
Confidence 478888888888777651 1 12369999999999999999999987432 22345565543
No 235
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.82 E-value=0.0076 Score=63.27 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 85 AFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|+++.++.+...+..+ .-|.++|++|+|||++|+.+++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4778988888888877654 3588999999999999999998764
No 236
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.74 E-value=0.04 Score=58.89 Aligned_cols=111 Identities=12% Similarity=0.180 Sum_probs=67.5
Q ss_pred HhhcccceeeecccccchhhcccccccccCCCcEEEeecCCCcceeecCCCCccCCCCCccceecccccccccccccccc
Q 003192 657 MQLKGIEDLYLGELQDVKNVLNELDAEGFLQLKHLHVQNSPYILCIVDSVEGVACDAFPLLESLFLHNLTNLEKICNGRL 736 (840)
Q Consensus 657 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~ 736 (840)
....+|+.+.+... +..+... ...++.+|+.+.+... +..+.. .....+.+|+.+.+.. .++.+.. .
T Consensus 214 ~~~~~l~~i~~~~~--~~~i~~~-~f~~~~~L~~i~lp~~--v~~I~~----~aF~~~~~l~~i~l~~--~i~~i~~--~ 280 (379)
T 4h09_A 214 SYGKNLKKITITSG--VTTLGDG-AFYGMKALDEIAIPKN--VTSIGS----FLLQNCTALKTLNFYA--KVKTVPY--L 280 (379)
T ss_dssp TTCSSCSEEECCTT--CCEECTT-TTTTCSSCCEEEECTT--CCEECT----TTTTTCTTCCEEEECC--CCSEECT--T
T ss_pred ccccccceeeeccc--eeEEccc-cccCCccceEEEcCCC--ccEeCc----cccceeehhccccccc--cceeccc--c
Confidence 33556666666432 2222211 2255678888888653 444422 2334567788888753 4555532 2
Q ss_pred CcccCCCCCEEEEecCCCCcccccHHHhhhcccCcEEEEcccccchhh
Q 003192 737 TAASFCNLGIIKVGNCNKLKSILSVSIARGLQQLQVIDVTECKSMEVI 784 (840)
Q Consensus 737 ~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~ 784 (840)
....+++|+.+.+.+ ..++.+.. ..+.++++|+.+.|.+ +++.+
T Consensus 281 aF~~c~~L~~i~l~~-~~i~~I~~-~aF~~c~~L~~i~lp~--~l~~I 324 (379)
T 4h09_A 281 LCSGCSNLTKVVMDN-SAIETLEP-RVFMDCVKLSSVTLPT--ALKTI 324 (379)
T ss_dssp TTTTCTTCCEEEECC-TTCCEECT-TTTTTCTTCCEEECCT--TCCEE
T ss_pred ccccccccccccccc-cccceehh-hhhcCCCCCCEEEcCc--cccEE
Confidence 344678999999976 45888765 4567889999999853 34444
No 237
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.66 E-value=0.0023 Score=58.25 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=33.1
Q ss_pred HHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC
Q 003192 97 TNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ 145 (840)
Q Consensus 97 ~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 145 (840)
+..+.+-....++|+|+.|+|||||++.+++..... .+ .+++++...
T Consensus 28 ~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 28 VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 334433245789999999999999999999987643 12 256666543
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.64 E-value=0.011 Score=64.99 Aligned_cols=174 Identities=14% Similarity=0.219 Sum_probs=88.5
Q ss_pred CcccccchHHHHHHHHHHh---CCC---------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 82 GYQAFDSRISTFKDITNAL---SNP---------SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
.+..+.|.++.+.++.+.. ... -.+-|.|+|++|+||||||+.++...... .+.++.+.-.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~-----~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP-----FITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC-----EEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEehhHHHHh
Confidence 3456778776666555443 221 12348999999999999999999876422 344443221100
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC----------------ccccCCccCC--CCC
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD----------------LETLGIPLGD--EHK 211 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~--~~~ 211 (840)
.... .......+.+......+.++++|+++.... +..+...+.. ...
T Consensus 104 --------------~~g~-~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~ 168 (499)
T 2dhr_A 104 --------------FVGV-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 168 (499)
T ss_dssp --------------CTTH-HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSC
T ss_pred --------------hhhh-HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCc
Confidence 0000 000111111111112357999999964210 0111111111 123
Q ss_pred CcEEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHcCCCh
Q 003192 212 GCKVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKMVAEGDCIRNHDLQSLAVAIAKECAGLP 279 (840)
Q Consensus 212 gs~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 279 (840)
+..|+.||....+..... .-...+.++..+.++-.++++.++. .....++. ....+++.+.|+.
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSS--TTHHHHTTSCSCC
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHH--HHHHHHHhcCCCC
Confidence 445666676665542111 1234778888888888888876532 11111111 1345667777765
No 239
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.63 E-value=0.0077 Score=59.94 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=53.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCcEEEEEeCCCccHHHHHHHHHHHhCCCcc---------ccChhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK----LFDEVVFVDVPQIPDIKKMQGQIADELGLFLC---------EESESG 171 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 171 (840)
..++.|+|++|+||||||..++....... .-..++|++....++..++. ++++.++.... ......
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999987532211 12468898877655555443 34455544321 011111
Q ss_pred ----HHHHHHHHHHcCCcEEEEEccccc
Q 003192 172 ----RARRLYARMKEEKKILVILDDIWA 195 (840)
Q Consensus 172 ----~~~~l~~~l~~~k~~LlVlDdv~~ 195 (840)
....+.+.+...+.-++|+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 122233334334667888888743
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.62 E-value=0.0023 Score=65.30 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=42.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe--CCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcC
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV--PQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEE 183 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 183 (840)
+++.|+|++|+||||||.+++.... ..++|+++ .+..+. ...........+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh-
Confidence 5778999999999999999987611 13567776 322110 001122233445555554
Q ss_pred CcEEEEEccccc
Q 003192 184 KKILVILDDIWA 195 (840)
Q Consensus 184 k~~LlVlDdv~~ 195 (840)
.+ ++|+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 34 999999853
No 241
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.58 E-value=0.004 Score=61.59 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=29.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ 145 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 145 (840)
..+++|+|++|+|||||++.++....... ..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc
Confidence 36899999999999999999986654331 2466766543
No 242
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.52 E-value=0.0037 Score=73.87 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHhCC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 85 AFDSRISTFKDITNALSN---------PSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 477888888887776641 123478999999999999999999887
No 243
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.47 E-value=0.0038 Score=64.57 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhCCC---CccEEEEEcCCCCcHHHHHHHHHHHhh-ccCCCCcEEEEEe
Q 003192 89 RISTFKDITNALSNP---SVDMIGICGMGGIGKTMLVKEIARQVK-GHKLFDEVVFVDV 143 (840)
Q Consensus 89 r~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~v 143 (840)
+...++.+.+++... ....|.|+|++|+|||+||+.+++... .. . ..++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g-~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-G-VSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-C-CCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEH
Confidence 444555555665531 246889999999999999999999876 43 2 23556654
No 244
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.44 E-value=0.014 Score=59.35 Aligned_cols=84 Identities=10% Similarity=0.030 Sum_probs=55.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHH-HHHHHHH
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRA-RRLYARM 180 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~l~~~l 180 (840)
++-|.|++|+||||||.+++.....+..=..++||+....++.. .+++++.+.+. ....+.+ ..+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999887765432111358999887777654 36777765432 1222233 3334444
Q ss_pred ---HcCCcEEEEEccccc
Q 003192 181 ---KEEKKILVILDDIWA 195 (840)
Q Consensus 181 ---~~~k~~LlVlDdv~~ 195 (840)
..++.-++|+|-|..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 446678999999853
No 245
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.44 E-value=0.012 Score=57.56 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=33.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQ 153 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 153 (840)
..++.|+|.+|+||||||..++. .. -..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH
Confidence 46999999999999999999987 21 2358888877655655544
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.32 E-value=0.01 Score=69.94 Aligned_cols=151 Identities=14% Similarity=0.241 Sum_probs=81.8
Q ss_pred CcccccchHHHHHHHHHHhCC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc
Q 003192 82 GYQAFDSRISTFKDITNALSN-------------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD 148 (840)
Q Consensus 82 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 148 (840)
.+..++|.+..++++.+++.. .....|.|+|++|+||||||+.+++..... .+.++.+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEchH---
Confidence 345578887777777776531 234579999999999999999998865322 23333211
Q ss_pred HHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEcccccccC-------------ccccCCccC--CCCCCc
Q 003192 149 IKKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWARLD-------------LETLGIPLG--DEHKGC 213 (840)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~gs 213 (840)
+ ....... .......+.+......+.++++|++..... ...+...+. ....+.
T Consensus 274 ---l--------~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 274 ---I--------MSKLAGE-SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ---H--------SSSSTTH-HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred ---h--------hhhhhhh-HHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 0 0011111 112233344444434678999999953310 001111111 112334
Q ss_pred EEEEeeCCcchhhccc----CccceEEccCCCHHHHHHHHHHH
Q 003192 214 KVLLTSRSRGVLSREM----DSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 214 ~iliTtR~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
.+|.||.......... .-...+.+...+.++-.+++...
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~ 384 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHH
Confidence 5555655543221111 12235678888888888888766
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.31 E-value=0.014 Score=61.01 Aligned_cols=84 Identities=20% Similarity=0.255 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRARRLYAR 179 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 179 (840)
..++.|+|++|+||||||.+++....... ..++|++....++.. .+++++..... ....+.+....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 46999999999999999999988765431 347888877766654 45566654321 1112222222333
Q ss_pred H-HcCCcEEEEEccccc
Q 003192 180 M-KEEKKILVILDDIWA 195 (840)
Q Consensus 180 l-~~~k~~LlVlDdv~~ 195 (840)
+ ...+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 2 234556889998743
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.27 E-value=0.019 Score=60.35 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=41.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCcEEEEEeCCCccHHHHHHHHHHHhCCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK----LFDEVVFVDVPQIPDIKKMQGQIADELGLF 163 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 163 (840)
..++.|+|.+|+||||||.+++....... .-..++|++....++.+++. ++++.++..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~ 183 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVD 183 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 46999999999999999999887643211 12368999988877777654 345555543
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.15 E-value=0.016 Score=60.42 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=41.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCcEEEEEeCCCccHHHHHHHHHHHhCCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKL----FDEVVFVDVPQIPDIKKMQGQIADELGLF 163 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 163 (840)
..++.|+|.+|+||||||.+++........ -..++|++....++.+++. ++++.++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~ 168 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLD 168 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCC
Confidence 469999999999999999998876432210 1368999888877777665 345666553
No 250
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.09 E-value=0.018 Score=61.41 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=52.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCcEEEEEeCCCccHHHHHHHHHHHhCCCcc---------ccCh--
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK----LFDEVVFVDVPQIPDIKKMQGQIADELGLFLC---------EESE-- 169 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~-- 169 (840)
..++.|+|++|+|||||+..++-...... .-..++|++....+....+ +.+++.++.... ....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 46999999999999999998764332110 1245889887766665554 346666665321 0011
Q ss_pred --hhHHHHHHHHHHcCCcEEEEEcccc
Q 003192 170 --SGRARRLYARMKEEKKILVILDDIW 194 (840)
Q Consensus 170 --~~~~~~l~~~l~~~k~~LlVlDdv~ 194 (840)
......+.+.+...+.-++|+|.+.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchh
Confidence 1122233333444556788888764
No 251
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.05 E-value=0.038 Score=58.17 Aligned_cols=159 Identities=8% Similarity=-0.064 Sum_probs=96.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHc
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKE 182 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 182 (840)
.-.+++.++|+.|.||++.|+.+.+..... .|+....+.+....++.++...+.. ..+.
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~plf- 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSLF- 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------HHHC-
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------cCCc-
Confidence 345799999999999999999998876533 3543222233334444444322210 1112
Q ss_pred CCcEEEEEccccc-c--cCccccCCccCCCCCCcEEEEeeCC-------cchhhcccCccceEEccCCCHHHHHHHHHHH
Q 003192 183 EKKILVILDDIWA-R--LDLETLGIPLGDEHKGCKVLLTSRS-------RGVLSREMDSEINFLVGILSQEESWSLFQKM 252 (840)
Q Consensus 183 ~k~~LlVlDdv~~-~--~~~~~l~~~l~~~~~gs~iliTtR~-------~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 252 (840)
+++-++|+|+++. . ..++.+...+..-..++.+|+++-. ..+..........++..+++.++..+.+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4567889999865 2 3344454444444457777776643 1222222233457889999999988888777
Q ss_pred HhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 003192 253 VAEGDCIRNHDLQSLAVAIAKECAGLPIAIVTI 285 (840)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 285 (840)
+...+ ..-..+.+..+++.++|.+.++...
T Consensus 155 ~~~~g---~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLN---LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTT---CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcC---CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 53322 1223567888999999988776653
No 252
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.03 E-value=0.0087 Score=62.32 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=55.0
Q ss_pred HHHHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCCc----cc
Q 003192 94 KDITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGH-KLFDEVVFVDVPQIP-DIKKMQGQIADELGLFL----CE 166 (840)
Q Consensus 94 ~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~----~~ 166 (840)
-++++.+.. .....++|+|.+|+|||||++.+.+....+ ..++ ++++-+.+.. .+.++.+ .+.... ..
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~----~~~~~vV~atad 236 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQR----LVKGEVVASTFD 236 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHT----TCSSEEEEECTT
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHH----HhCeEEEEeCCC
Confidence 345665552 334689999999999999999998866432 1233 4456677554 2333332 221110 01
Q ss_pred cChhh------HHHHHHHHHH-cCCcEEEEEcccccc
Q 003192 167 ESESG------RARRLYARMK-EEKKILVILDDIWAR 196 (840)
Q Consensus 167 ~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~~~ 196 (840)
++... .+..+.+++. .++.+|+++||+...
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 11111 1112223333 488999999998643
No 253
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.02 E-value=0.0037 Score=74.72 Aligned_cols=59 Identities=19% Similarity=0.373 Sum_probs=41.5
Q ss_pred cccchHHHHHHHHHHhCC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC
Q 003192 85 AFDSRISTFKDITNALSN-------P--SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ 145 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 145 (840)
.++|++..++.+...+.. + ....|.|+|++|+|||++|+.+++...... ...+.++.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~ 626 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTE 626 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTT
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechh
Confidence 468888888888777642 1 125789999999999999999998774321 1244555443
No 254
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.99 E-value=0.024 Score=59.56 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRARRLYAR 179 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 179 (840)
..++.|+|.+|+||||||.+++...... =..++|++....++.. .++.++..... ....+....+.+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4699999999999999999988765433 1358899887766543 25556544321 1112223333333
Q ss_pred HH-cCCcEEEEEccccc
Q 003192 180 MK-EEKKILVILDDIWA 195 (840)
Q Consensus 180 l~-~~k~~LlVlDdv~~ 195 (840)
+. ..+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 33 34456999999854
No 255
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.94 E-value=0.019 Score=59.82 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=41.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC---------CC-----CcEEEEEeCCCccHHHHHHHHHHHhCCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK---------LF-----DEVVFVDVPQIPDIKKMQGQIADELGLF 163 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 163 (840)
..++.|+|.+|+||||||.+++....... .. ..++|++....++.+++.. +++.++.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~ 169 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGID 169 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 46999999999999999999887532110 11 3689999888777777653 45566543
No 256
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.90 E-value=0.008 Score=57.87 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhCC---CCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 89 RISTFKDITNALSN---PSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 89 r~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
|.+.++++.+.+.. ....+|+|.|++|+||||+++.+......
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 55667777776653 34579999999999999999999887653
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.89 E-value=0.03 Score=58.78 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=52.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRARRLYAR 179 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 179 (840)
..++.|.|.+|+||||||.+++...... =..++|++....++.. .++.++..... ....+.+..+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4689999999999999999988766533 2358999887776643 24556544221 1112223333333
Q ss_pred HH-cCCcEEEEEcccc
Q 003192 180 MK-EEKKILVILDDIW 194 (840)
Q Consensus 180 l~-~~k~~LlVlDdv~ 194 (840)
+. ..+.-+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 32 2445689999874
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.79 E-value=0.032 Score=58.83 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=52.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRARRLYAR 179 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 179 (840)
..+|.|.|.+|+||||||.+++...... =..++|++....++.. .++.++.+... ....+.+....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4689999999999999999988765433 2368999988766544 24555553221 1122223333344
Q ss_pred HH-cCCcEEEEEcccc
Q 003192 180 MK-EEKKILVILDDIW 194 (840)
Q Consensus 180 l~-~~k~~LlVlDdv~ 194 (840)
+. ..+.-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 43 2345689999874
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.78 E-value=0.034 Score=56.86 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=29.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV 143 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 143 (840)
...+|+|+|.+|+||||++..++......... .+..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEec
Confidence 45799999999999999999999877642222 3555544
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.78 E-value=0.011 Score=57.29 Aligned_cols=41 Identities=20% Similarity=0.427 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCC--CCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 91 STFKDITNALSN--PSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 91 ~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+.+++|.+.+.. ....+|+|+|++|.|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445666666653 45679999999999999999999887764
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.63 E-value=0.042 Score=53.91 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=36.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCcEEEEEeCCCccHHHHHHHHHHHhC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHK----LFDEVVFVDVPQIPDIKKMQGQIADELG 161 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 161 (840)
..+++|+|++|+|||||++.++....... .-..++|+.-........+ ..+.+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i-~~~~~~~~ 84 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 84 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHH-HHHHHHcC
Confidence 36999999999999999999987543211 1234788876554443332 33444443
No 262
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.52 E-value=0.07 Score=57.35 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=63.3
Q ss_pred HHHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCC------c--
Q 003192 95 DITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLF------L-- 164 (840)
Q Consensus 95 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~-- 164 (840)
+.++.+.. .+...++|+|.+|+|||+|+..+.+..... +-+.++++-+.+.. .+.++.+++.+.-..+ .
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 35555541 234689999999999999999998875432 24667888787765 4667777776542221 0
Q ss_pred -----cccChh------hHHHHHHHHHHc--CCcEEEEEccccc
Q 003192 165 -----CEESES------GRARRLYARMKE--EKKILVILDDIWA 195 (840)
Q Consensus 165 -----~~~~~~------~~~~~l~~~l~~--~k~~LlVlDdv~~ 195 (840)
..++.. .....+.+++.. ++.+|+++||+..
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011111 122344455553 8999999999753
No 263
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.49 E-value=0.029 Score=60.41 Aligned_cols=89 Identities=19% Similarity=0.313 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCC-------ccccChhh------
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLF-------LCEESESG------ 171 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 171 (840)
..++|+|.+|+|||||+..+......+ +-+.++++-+.+.. ...++.+++...-... ...++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999998876543 12455677776654 3455555554320000 00111110
Q ss_pred HHHHHHHHHH--cCCcEEEEEccccc
Q 003192 172 RARRLYARMK--EEKKILVILDDIWA 195 (840)
Q Consensus 172 ~~~~l~~~l~--~~k~~LlVlDdv~~ 195 (840)
....+.+++. +++++|+++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1123344444 38899999999853
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.43 E-value=0.0089 Score=55.79 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+|+|.|++|+||||+|+.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998764
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.39 E-value=0.0087 Score=56.26 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+|.|.|++|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 266
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.35 E-value=0.011 Score=59.90 Aligned_cols=61 Identities=13% Similarity=0.231 Sum_probs=37.9
Q ss_pred cccccchHHHHHHHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC
Q 003192 83 YQAFDSRISTFKDITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ 145 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 145 (840)
...++|+...+.++.+.+. ......|.|+|.+|+|||++|+.+++...... ...+.++.+.
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~ 67 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAA 67 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT--SCEEEEEGGG
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC--CCeEEEecCC
Confidence 3457788887777766554 12235677999999999999999998654221 1234555554
No 267
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.35 E-value=0.046 Score=59.02 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=63.6
Q ss_pred HHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHHHHHhCCC-------c--
Q 003192 96 ITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQIADELGLF-------L-- 164 (840)
Q Consensus 96 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~-- 164 (840)
.++.|.. .+...++|+|.+|+|||+|+..+.+..... +-+.++++-+.+.. .+.++.+++.+.-..+ .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 4444441 234579999999999999999998875432 34678888887765 5667777776542221 0
Q ss_pred -----cccCh------hhHHHHHHHHHHc--CCcEEEEEccccc
Q 003192 165 -----CEESE------SGRARRLYARMKE--EKKILVILDDIWA 195 (840)
Q Consensus 165 -----~~~~~------~~~~~~l~~~l~~--~k~~LlVlDdv~~ 195 (840)
..++. ......+.+++.. ++.+|+++||+..
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00111 1123345566654 7899999999753
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.32 E-value=0.011 Score=56.79 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|.|+|++|+||||+|+.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998774
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.28 E-value=0.0097 Score=55.68 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEI 125 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v 125 (840)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 270
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.24 E-value=0.047 Score=54.36 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=26.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh-ccCCCCcEEEEEeC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK-GHKLFDEVVFVDVP 144 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs 144 (840)
..+++|+|+.|+|||||++.++.... .. -..++++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 46999999999999999999884322 11 2345666543
No 271
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.19 E-value=0.063 Score=55.27 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|+|.|+.|+||||+|+.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345999999999999999999887765
No 272
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.15 E-value=0.1 Score=56.10 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
...+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 35799999999999999999999877643
No 273
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.11 E-value=0.013 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+.|.|+|++|+||||+|+.+++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 274
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.05 E-value=0.025 Score=58.61 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhC----CCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 90 ISTFKDITNALS----NPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 90 ~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+...+++++.+. .+....|.|+|++|+||||+++.++.....
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344455555543 455667999999999999999999887653
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.05 E-value=0.011 Score=55.13 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+|+|+|++|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988754
No 276
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.03 E-value=0.014 Score=54.97 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|+|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988653
No 277
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.02 E-value=0.055 Score=56.86 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh--ccC-CC-CcEEEEEeCCCccHHHHHHHHHHHhC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK--GHK-LF-DEVVFVDVPQIPDIKKMQGQIADELG 161 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~-~F-~~~~wv~vs~~~~~~~~~~~i~~~l~ 161 (840)
...++.|+|++|+|||||+..++.... ... .. ..++|++....+....+ ..+++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~ 190 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 190 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcC
Confidence 347999999999999999999987652 110 01 23589887665444433 33444443
No 278
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.00 E-value=0.013 Score=61.95 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 81 KGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 81 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+..++|++..+..+......+...-|.|+|++|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 44566889887666544444333334488999999999999999998764
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.98 E-value=0.016 Score=55.70 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998876
No 280
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.97 E-value=0.15 Score=52.71 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=38.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADE 159 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 159 (840)
..++.|.|.+|+||||+|.+++.....+. ..++|++.. .+.+++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999987665442 467887655 4566666666554
No 281
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.92 E-value=0.017 Score=55.48 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
....+|+|+|++|.||||+|+.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4457999999999999999999998875
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.90 E-value=0.014 Score=55.49 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..+|+|+|++|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999764
No 283
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.90 E-value=0.027 Score=53.23 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=29.6
Q ss_pred hcCCCceeEEEecCCcCC-----CCchhhhcccCCcEEEecCcccCC--c----ccccCCCCCCEEeccCC
Q 003192 483 FAGMIELRVLDLTKMHLL-----SLPSSLHLLVNLRTLCLDQSVLGD--I----AVIGELKQLEILSLSSS 542 (840)
Q Consensus 483 ~~~l~~L~~L~l~~~~~~-----~lp~~i~~L~~L~~L~L~~~~l~~--~----~~i~~L~~L~~L~L~~~ 542 (840)
+..-+.|+.|+|++|.+. .+-+.+..=+.|++|+|++|.|.. . ..+..-+.|++|+|+++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344455666666666554 223334444556666666655544 1 22333344555555543
No 284
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.82 E-value=0.22 Score=65.52 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=49.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKEEKK 185 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 185 (840)
+-|-++|++|+|||++|+.+..... .+ ..+.++.+...+...+++.+...+........... .-...+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~------~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL------LPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE------EEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc------cCCCCCce
Confidence 5678999999999999987765431 12 35667888888888877777665543210000000 00002678
Q ss_pred EEEEEcccc
Q 003192 186 ILVILDDIW 194 (840)
Q Consensus 186 ~LlVlDdv~ 194 (840)
.++.+||+.
T Consensus 1338 ~VlFiDEin 1346 (2695)
T 4akg_A 1338 LVLFCDEIN 1346 (2695)
T ss_dssp EEEEEETTT
T ss_pred EEEEecccc
Confidence 999999964
No 285
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.81 E-value=0.016 Score=55.11 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
++|.|.|++|+||||+|+.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998763
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.81 E-value=0.014 Score=56.13 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|+|.|++|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 287
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.81 E-value=0.016 Score=54.46 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIAR 127 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~ 127 (840)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999987
No 288
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.79 E-value=0.018 Score=54.69 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
.+|.|.|++|+||||+|+.+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987753
No 289
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.77 E-value=0.056 Score=55.72 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV 143 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 143 (840)
....+|+|+|+.|+|||||++.+..-......-..+.+|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~q 128 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTT 128 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEec
Confidence 34579999999999999999999887654211123555543
No 290
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.75 E-value=0.016 Score=54.45 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|.|+|++|+||||+|+.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 291
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.73 E-value=0.094 Score=53.72 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=34.7
Q ss_pred HHHHHHHHhCC--------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe
Q 003192 92 TFKDITNALSN--------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV 143 (840)
Q Consensus 92 ~~~~l~~~l~~--------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 143 (840)
..+.+.+.+.. ....+|+|+|.+|+||||++..++....... ..+.++..
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~ 140 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAA 140 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcc
Confidence 34556665532 2346999999999999999999998776431 23555544
No 292
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.71 E-value=0.023 Score=53.78 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
...+|.|.|++|+||||+++.++......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999887643
No 293
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.68 E-value=0.019 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998775
No 294
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.66 E-value=0.025 Score=55.45 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 93 FKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 93 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+.+...+......+|.|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444444445678999999999999999999988754
No 295
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.66 E-value=0.039 Score=56.20 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
....+|+|+|.+|+||||||+.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34679999999999999999998887654
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.65 E-value=0.017 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+.|.|.|++|+||||+|+.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 297
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.65 E-value=0.022 Score=53.87 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
....|+|+|++|+||||+|+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.64 E-value=0.021 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|.|.|++|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988763
No 299
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.64 E-value=0.13 Score=55.55 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=29.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVP 144 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 144 (840)
..++|.++|.+|+||||+|..++..+..+... .+.-++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecC
Confidence 35799999999999999999999887654122 34555543
No 300
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.63 E-value=0.023 Score=52.43 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
..++|+|+|..|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35799999999999999999999887643
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.63 E-value=0.024 Score=52.99 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+|+|+|++|+||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 302
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.63 E-value=0.017 Score=55.77 Aligned_cols=27 Identities=26% Similarity=0.626 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..++|+|+|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988763
No 303
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.62 E-value=0.15 Score=54.75 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV 143 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 143 (840)
..+|.++|.+|+||||++..++.....+. . .+..++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~-kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRG-Y-KVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTT-C-CEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEec
Confidence 57999999999999999999998776542 2 3444443
No 304
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.62 E-value=0.1 Score=51.68 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ 145 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 145 (840)
..++.|.|.+|+||||||.+++...... =..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 3689999999999999998887665432 23578877554
No 305
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.61 E-value=0.02 Score=59.59 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=36.4
Q ss_pred HHHHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCcEEEEEeCCCc
Q 003192 94 KDITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGH-KLFDEVVFVDVPQIP 147 (840)
Q Consensus 94 ~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~ 147 (840)
-++++.+.. .....++|+|.+|+|||+|+..+.+....+ ..+. ++++-+.+..
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 456676662 334689999999999999999999876532 1232 3556666543
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.59 E-value=0.023 Score=52.79 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|+|.|+.|+||||+|+.+.+...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998765
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.56 E-value=0.022 Score=55.03 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|+|+|++|+||||+++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457999999999999999999987654
No 308
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.55 E-value=0.025 Score=58.25 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=35.2
Q ss_pred cccchHHHHHHHHHHhCC--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 85 AFDSRISTFKDITNALSN--PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 467888777777776641 2234677999999999999999998653
No 309
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.53 E-value=0.023 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+|+|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 310
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.52 E-value=0.35 Score=49.25 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=48.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC-ccHHHHHHHHHHHhCCCccc----cChhhHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI-PDIKKMQGQIADELGLFLCE----ESESGRARRLYAR 179 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 179 (840)
..+|+++|.+|+||||++..++....... ..+.++..... ....+.++...+..+..... .+....+....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 56999999999999999999988776442 24566654332 22233334445555543221 1122233344455
Q ss_pred HHcCCcEEEEEccc
Q 003192 180 MKEEKKILVILDDI 193 (840)
Q Consensus 180 l~~~k~~LlVlDdv 193 (840)
+....-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54222226777764
No 311
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.51 E-value=0.025 Score=53.04 Aligned_cols=24 Identities=46% Similarity=0.619 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998765
No 312
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.50 E-value=0.035 Score=59.00 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHHHhC-------------C--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 86 FDSRISTFKDITNALS-------------N--PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 86 ~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
++|.+..++.+...+. . .....|.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888888877772 1 1335789999999999999999998874
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.49 E-value=0.022 Score=56.93 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
++|.|+|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 314
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.48 E-value=0.018 Score=54.40 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
++|+|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999998764
No 315
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.46 E-value=0.024 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|+|.|++|+||||+|+.+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 316
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.45 E-value=0.023 Score=55.72 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+|+|+|++|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988654
No 317
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.42 E-value=0.033 Score=52.67 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=73.6
Q ss_pred hhcCCCceeEEEecCC-cCC-----CCchhhhcccCCcEEEecCcccCCc------ccccCCCCCCEEeccCCCCC----
Q 003192 482 FFAGMIELRVLDLTKM-HLL-----SLPSSLHLLVNLRTLCLDQSVLGDI------AVIGELKQLEILSLSSSDIE---- 545 (840)
Q Consensus 482 ~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~L~~L~~L~L~~~~l~~~------~~i~~L~~L~~L~L~~~~l~---- 545 (840)
++.+-+.|+.|+|+++ .+. .+-+.+..=.+|+.|+|++|.+.+. ..+..-+.|++|+|++|.|.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3456678888999875 665 2445566667899999999998762 33556688999999999987
Q ss_pred -CCcHHHhccCCCCEEecCCCC--CCccccccccccccccccCChhhhhcCCCCCeEEEEeec
Q 003192 546 -HLPREIGRLSKLRLLDLTNCS--KLKSIPPNVERLNIERSNASLDELKHLSRLTTLEIHIQG 605 (840)
Q Consensus 546 -~lp~~i~~L~~L~~L~l~~c~--~l~~lp~~l~~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 605 (840)
.+-..+..=+.|++|+|++|. .++.-- .......+..-+.|+.|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g----------~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQV----------EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHH----------HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHH----------HHHHHHHHHhCCCcCeEeccCCC
Confidence 233445555679999998642 222100 00112335556677777776443
No 318
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.40 E-value=0.015 Score=64.09 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=36.2
Q ss_pred cccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 85 AFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|+++.++.+...+..+ .-|.++|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3678888888887777654 4688999999999999999988664
No 319
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.39 E-value=0.023 Score=55.46 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 90 ISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 90 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+..+.+...+.....++|+|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34445555554445678999999999999999999988764
No 320
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.37 E-value=0.062 Score=51.88 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
.+|.|.|++|+||||+|+.+.+.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 589999999999999999999987643
No 321
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.37 E-value=0.028 Score=54.35 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..++|.|.|++|+||||.|+.+++++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 468999999999999999999998774
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.34 E-value=0.027 Score=53.69 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+|+|.|++|+||||+|+.+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988753
No 323
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.33 E-value=0.022 Score=53.03 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
++|.|.|++|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998764
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.33 E-value=0.027 Score=54.17 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+|+|.|++|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 325
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.32 E-value=0.35 Score=53.04 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=27.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV 143 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 143 (840)
..++|.|+|.+|+||||++..++..+..+ .. .+..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~-kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GW-KTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CC-eEEEEec
Confidence 35699999999999999999998877643 22 2444544
No 326
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.32 E-value=0.026 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+|+|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 327
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.31 E-value=0.47 Score=49.02 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=36.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC-CccHHHHHHHHHHHhCC
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ-IPDIKKMQGQIADELGL 162 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 162 (840)
...+|+|+|+.|+||||+++.++....... ..+.++...- .....+-++...+.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 457999999999999999999998776542 2344443321 12233334445555553
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.30 E-value=0.02 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
++|+|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999998765
No 329
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.30 E-value=0.029 Score=53.26 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..++|+|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987653
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.29 E-value=0.027 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|+|.|++|+||||+|+.+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988663
No 331
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.27 E-value=0.041 Score=58.77 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..|.++|++|+|||++|+.+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998773
No 332
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.27 E-value=0.025 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIAR 127 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~ 127 (840)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.24 E-value=0.029 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.|+|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 334
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.24 E-value=0.04 Score=56.17 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 335
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.24 E-value=0.033 Score=53.45 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|.|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 336
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.24 E-value=0.024 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+.|.|.|++|+|||||++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999987653
No 337
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.24 E-value=0.03 Score=57.76 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=30.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ 145 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 145 (840)
++.+||+|.|-|||||||.|..++--+.... + .|.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G-k-kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG-K-RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC-C-eEEEEecCC
Confidence 3578999999999999999998887765442 2 366666654
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.23 E-value=0.024 Score=54.56 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIAR 127 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~ 127 (840)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 339
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.23 E-value=0.027 Score=53.87 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|+|.|++|+||||+|+.+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 340
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.17 E-value=0.028 Score=53.97 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
+...+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999874
No 341
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.17 E-value=0.091 Score=61.00 Aligned_cols=93 Identities=16% Similarity=0.357 Sum_probs=58.8
Q ss_pred cccccchHHHHHHHHHHhCC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccH
Q 003192 83 YQAFDSRISTFKDITNALSN-------------PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 149 (840)
+..+.|-++.++++.+.+.- ...+-|.++|++|+|||.+|+.+++..... ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc----
Confidence 44566777777776665531 123567899999999999999999976533 333321
Q ss_pred HHHHHHHHHHhCCCccccChhhHHHHHHHHHHcCCcEEEEEccccc
Q 003192 150 KKMQGQIADELGLFLCEESESGRARRLYARMKEEKKILVILDDIWA 195 (840)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 195 (840)
.+ ++. ...++++ ..+..+++...+..+++|++|+++.
T Consensus 545 ~~----l~s----~~vGese-~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 PE----LLT----MWFGESE-ANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HH----HHT----TTCSSCH-HHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ch----hhc----cccchHH-HHHHHHHHHHHHcCCceeechhhhH
Confidence 11 111 1122222 3456666666666789999999874
No 342
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.15 E-value=0.03 Score=54.16 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|+|+|+.|.|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988765
No 343
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.11 E-value=0.2 Score=51.06 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=47.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCcc-HHHHHHHHHHHhCCCccc----cChhhHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPD-IKKMQGQIADELGLFLCE----ESESGRARRLYA 178 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 178 (840)
...+|+|+|.+|+||||++..++....... ..+.++....... ...-+....+..+..... ...........+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 356999999999999999999998776431 2355555432221 111223344445443221 112222233444
Q ss_pred HHHcCCcEEEEEccc
Q 003192 179 RMKEEKKILVILDDI 193 (840)
Q Consensus 179 ~l~~~k~~LlVlDdv 193 (840)
.+...+.=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 443123346778865
No 344
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.09 E-value=0.033 Score=55.50 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|+|+|+.|+||||+++.+++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999999997764
No 345
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.09 E-value=0.061 Score=50.61 Aligned_cols=112 Identities=19% Similarity=0.165 Sum_probs=59.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC---ccHHHHHHHHHHHhCCC---------ccccC---hh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI---PDIKKMQGQIADELGLF---------LCEES---ES 170 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~~~---------~~~~~---~~ 170 (840)
..|-|++-.|.||||.|-.++-+..... + .+.++.+-+. ....++ ++.++.. +.... +.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHHH
Confidence 4566666666999999998887765442 2 3556655442 223333 3333211 11100 11
Q ss_pred hHH----HHHHHHHHcCCcEEEEEcccccc-----cCccccCCccCCCCCCcEEEEeeCCcc
Q 003192 171 GRA----RRLYARMKEEKKILVILDDIWAR-----LDLETLGIPLGDEHKGCKVLLTSRSRG 223 (840)
Q Consensus 171 ~~~----~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iliTtR~~~ 223 (840)
..+ ....+.+..++-=|||||++-.. ...+.+...+.......-||+|+|...
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 112 22233333344459999998542 223333333444445667999999863
No 346
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.08 E-value=0.022 Score=53.62 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|.|.|++|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999987754
No 347
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.08 E-value=0.061 Score=47.29 Aligned_cols=50 Identities=24% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEecCCcCC--CCchhhhcccCCcEEEecCcccCCc--ccccCCCCCCEEeccCC
Q 003192 491 VLDLTKMHLL--SLPSSLHLLVNLRTLCLDQSVLGDI--AVIGELKQLEILSLSSS 542 (840)
Q Consensus 491 ~L~l~~~~~~--~lp~~i~~L~~L~~L~L~~~~l~~~--~~i~~L~~L~~L~L~~~ 542 (840)
+++.+++.++ .+|..+. .+|++|+|++|.|+.+ ..+..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444444444 4443221 2344444444444332 12334444444444444
No 348
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.07 E-value=0.024 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36899999999999999999987653
No 349
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.04 E-value=0.032 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
No 350
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.03 E-value=0.025 Score=52.74 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEI 125 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v 125 (840)
..+++|+|+.|.|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999964
No 351
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.01 E-value=0.035 Score=54.13 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...|.|.|++|+||||+|+.+++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988764
No 352
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.00 E-value=0.032 Score=52.92 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+|+|+|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998764
No 353
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.00 E-value=0.062 Score=53.27 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|+|.|++|+||||+|+.+.+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988763
No 354
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.98 E-value=0.098 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988754
No 355
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.98 E-value=0.033 Score=55.67 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
....+|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988754
No 356
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.97 E-value=0.66 Score=50.64 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIA 157 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 157 (840)
..++.|.|.+|+||||||..++........ ..++|++... +..++...+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHH
Confidence 368999999999999999999887654311 2577776543 3455555553
No 357
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.97 E-value=0.032 Score=54.15 Aligned_cols=111 Identities=13% Similarity=0.036 Sum_probs=61.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccccChhhHHHHHHHHHHc-
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCEESESGRARRLYARMKE- 182 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 182 (840)
...++.|+|..|.||||++..++.....+. ..++.++...+. . ...++++.++....... ......+++.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~-~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVE-VESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCEE-ESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCccccc-cCCHHHHHHHHHHH
Confidence 346899999999999999999988876542 234445433322 1 22244455554322111 1112234444432
Q ss_pred ---CCcEEEEEcccccc--cCccccCCccCCCCCCcEEEEeeCCcc
Q 003192 183 ---EKKILVILDDIWAR--LDLETLGIPLGDEHKGCKVLLTSRSRG 223 (840)
Q Consensus 183 ---~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtR~~~ 223 (840)
++.-+||+|.+... +.++.+. .+.+ .|..||+|-+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 33459999998643 2222221 1111 2677888888643
No 358
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.93 E-value=0.036 Score=55.34 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|+|+|+.|+||||+++.+.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356999999999999999999998764
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.93 E-value=0.032 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|+|.|++|+||||+|+.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988764
No 360
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.91 E-value=0.11 Score=65.99 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=54.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRARRLYA 178 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~ 178 (840)
..+.|-|+|++|+|||+||.++......+. ..++|+++...++... ++.++.+... ....+.+....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 357999999999999999999988765431 2578888877766655 4555533211 112223333333
Q ss_pred -HHHcCCcEEEEEcccc
Q 003192 179 -RMKEEKKILVILDDIW 194 (840)
Q Consensus 179 -~l~~~k~~LlVlDdv~ 194 (840)
.....+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 3344667899999985
No 361
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.89 E-value=0.077 Score=56.69 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=59.5
Q ss_pred HHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccC-CCC-cEEEEEeCCCc-cHHHHHHHHHHH--hCCCc-----
Q 003192 96 ITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHK-LFD-EVVFVDVPQIP-DIKKMQGQIADE--LGLFL----- 164 (840)
Q Consensus 96 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~-~~~~~~~~i~~~--l~~~~----- 164 (840)
.++.+.. .....++|.|.+|+|||+|+.++++...... +-+ .++++-+.+.. .+.++.+++.+. +....
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at 220 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL 220 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC
Confidence 4454441 2234578999999999999999998766421 111 56677676544 566676666543 11110
Q ss_pred cccChhh------HHHHHHHHHH--cCCcEEEEEccccc
Q 003192 165 CEESESG------RARRLYARMK--EEKKILVILDDIWA 195 (840)
Q Consensus 165 ~~~~~~~------~~~~l~~~l~--~~k~~LlVlDdv~~ 195 (840)
..++... .+..+.+++. .++.+|+++||+-.
T Consensus 221 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 221 ANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1111111 2234556666 38999999999853
No 362
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.87 E-value=0.032 Score=53.81 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..+|+|+|++|.||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 363
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.87 E-value=0.1 Score=50.47 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=26.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDE 137 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~ 137 (840)
..+|+|.|+.|+||||+|+.+.+..... +++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999887643 3443
No 364
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.86 E-value=0.036 Score=55.64 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.82 E-value=0.046 Score=56.05 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
...+|+|+|++|+||||+++.++......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999877654
No 366
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.81 E-value=0.032 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIAR 127 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~ 127 (840)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 367
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.78 E-value=0.038 Score=53.43 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDE 137 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~ 137 (840)
..+|+|.|+.|+||||+|+.+.+..... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999887643 3554
No 368
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.70 E-value=0.033 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.673 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998755
No 369
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.69 E-value=0.04 Score=53.18 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 370
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.66 E-value=0.041 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.|+|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988764
No 371
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.54 E-value=0.038 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...|.|.|++|+||||+|+.+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999988653
No 372
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.54 E-value=0.045 Score=53.20 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+++|+|+.|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457999999999999999999988654
No 373
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.54 E-value=0.059 Score=50.92 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=27.8
Q ss_pred HHHHHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 93 FKDITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 93 ~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+..+..++.. +....+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444432 2234799999999999999999998874
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.53 E-value=0.039 Score=53.94 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...|.|.|++|+||||+|+.+++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998765
No 375
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.52 E-value=0.049 Score=54.14 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+|+|.|+.|.|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.51 E-value=0.052 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|.|+|++|+||||+|+.+.....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988754
No 377
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.51 E-value=0.12 Score=56.62 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 88 SRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 88 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
+..+.++.+...+.+++ +.+.|.|.+|+||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 45566677777766543 389999999999999999999887654
No 378
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.49 E-value=0.043 Score=62.63 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=41.0
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 80 SKGYQAFDSRISTFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 80 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 445567899998888888877665 58899999999999999999986643
No 379
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.44 E-value=0.051 Score=49.69 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
....+++|+|+.|.|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345699999999999999999998876
No 380
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.40 E-value=0.043 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.38 E-value=0.055 Score=50.72 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999887643
No 382
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.38 E-value=0.055 Score=50.29 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
.++++|+|++|+|||||++.+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 579999999999999999999987653
No 383
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.34 E-value=0.042 Score=54.57 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998764
No 384
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.34 E-value=0.055 Score=52.34 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|.|.|+.|+||||+|+.+.....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999998775
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.31 E-value=0.026 Score=54.79 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
++|+|.|+.|+||||+|+.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999988754
No 386
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.31 E-value=0.28 Score=52.57 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV 143 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 143 (840)
..+|+|+|.+|+||||++..++....... ..+..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeec
Confidence 56999999999999999999998876542 23444544
No 387
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.26 E-value=0.031 Score=51.90 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
++|+|+|.+|.|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 689999999999999999998877654
No 388
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.23 E-value=0.048 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+|+|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988765
No 389
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.18 E-value=0.055 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 390
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.18 E-value=0.055 Score=52.08 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
++|+|.|+.|+||||+|+.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988764
No 391
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.15 E-value=0.26 Score=51.07 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=36.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADE 159 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 159 (840)
..++.|.|.+|+||||+|..++...... =..++|++. ..+.+++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHH
Confidence 3689999999999999999998876542 134677655 34566666666544
No 392
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.15 E-value=0.058 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+|.|.|++|+||+|.|+.+++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999998764
No 393
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.12 E-value=0.17 Score=51.89 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=34.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-cEEEEEeCCCccHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFD-EVVFVDVPQIPDIKKMQGQIAD 158 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~ 158 (840)
..+++|+|++|+|||||++.++...... -. .++|+.... ...++.+.+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 4689999999999999999998877654 12 466765432 34444444443
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.09 E-value=0.059 Score=52.65 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988764
No 395
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.06 E-value=0.078 Score=57.03 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=60.6
Q ss_pred HHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCC--CcEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------
Q 003192 96 ITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLF--DEVVFVDVPQIP-DIKKMQGQIADELGLFL------- 164 (840)
Q Consensus 96 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------- 164 (840)
.++.+.. .....++|.|.+|+|||+|+.++++.....+.- +.++++-+.+.. .+.++.+++...=....
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4555541 233567899999999999999999987653211 356777676554 46667766664321110
Q ss_pred cccChh------hHHHHHHHHHH--cCCcEEEEEccccc
Q 003192 165 CEESES------GRARRLYARMK--EEKKILVILDDIWA 195 (840)
Q Consensus 165 ~~~~~~------~~~~~l~~~l~--~~k~~LlVlDdv~~ 195 (840)
..++.. ..+..+.+++. .++.+|+++||+..
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 011111 12234445555 48999999999743
No 396
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.05 E-value=0.13 Score=53.13 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=32.0
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc
Q 003192 102 NPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP 147 (840)
Q Consensus 102 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 147 (840)
....++|+|+|-||+||||+|..++..+.... . .++-|+.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G-~-~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG-K-RVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC-C-eEEEEeCCCCC
Confidence 34568999999999999999999988776542 2 46666665443
No 397
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.04 E-value=0.054 Score=55.99 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.+|+|.|+.|+||||||+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 398
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.04 E-value=0.052 Score=58.40 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHhCC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 85 AFDSRISTFKDITNALSN--------------PSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 85 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
.++|.++.++.+...+.. ...+-|.++|++|+||||+|+.++.....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 367777777777655521 12356889999999999999999988754
No 399
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.00 E-value=0.12 Score=54.37 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=30.1
Q ss_pred HHHHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 93 FKDITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 93 ~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
..++++.+. .+...+|+|+|.+|+||||++..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344555554 456789999999999999999999887643
No 400
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.94 E-value=0.064 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIAR 127 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~ 127 (840)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 401
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.91 E-value=0.13 Score=50.40 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
...+|.|.|+.|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998865
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.91 E-value=0.057 Score=54.84 Aligned_cols=24 Identities=21% Similarity=0.603 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIAR 127 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~ 127 (840)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 403
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.90 E-value=0.065 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988763
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.87 E-value=0.061 Score=52.27 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..|.|.|++|+||||+|+.+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 405
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.86 E-value=0.19 Score=49.20 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=29.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEE
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVD 142 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 142 (840)
..+|.|.|+.|+||||+++.+.+..... ++..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 4689999999999999999999988754 465444443
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.85 E-value=0.075 Score=52.31 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...|.|.|++|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998864
No 407
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.78 E-value=0.071 Score=54.63 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
..+|+|+|+.|+||||+++.++......
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4699999999999999999999877643
No 408
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.73 E-value=0.046 Score=55.74 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
+..+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 409
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.71 E-value=0.065 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998763
No 410
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.66 E-value=0.068 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
.+++|+|+.|.|||||++.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 799999999999999999987643
No 411
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.63 E-value=0.22 Score=47.94 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIAD 158 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 158 (840)
.+|.|-|..|+||||+++.+.+..... .+..+.+..-.....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 589999999999999999999988755 3433444433333334444555543
No 412
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.61 E-value=0.16 Score=44.57 Aligned_cols=36 Identities=33% Similarity=0.313 Sum_probs=26.9
Q ss_pred ceeEEEecCCcCCCCch-hhhcccCCcEEEecCcccC
Q 003192 488 ELRVLDLTKMHLLSLPS-SLHLLVNLRTLCLDQSVLG 523 (840)
Q Consensus 488 ~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~ 523 (840)
.|++|+|++|.++.+|. .|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57778888888887765 4677788888888887753
No 413
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.61 E-value=0.046 Score=53.79 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=16.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIA-RQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~-~~~ 129 (840)
..+|+|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 414
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.53 E-value=0.61 Score=50.74 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=36.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADE 159 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 159 (840)
..++.|.|.+|+||||+|..++........ ..++|++.. .+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 468999999999999999999887654311 247777654 3456666666543
No 415
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.53 E-value=0.19 Score=48.61 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=35.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHH
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIAD 158 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 158 (840)
....+|.|.|+.|+||||+++.+.+.......++.+....-+......+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 34579999999999999999999998865123444432322222233344444443
No 416
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.53 E-value=0.093 Score=56.01 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=58.9
Q ss_pred HHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhcc--------CCCC-cEEEEEeCCCc-cHHHHHHHHHHH--hCC
Q 003192 96 ITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGH--------KLFD-EVVFVDVPQIP-DIKKMQGQIADE--LGL 162 (840)
Q Consensus 96 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~~--l~~ 162 (840)
.++.+.. .....++|.|.+|+|||+|+.++++..... .+-+ .++++-+.+.. .+.++.+++.+. +..
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 4444441 223567899999999999999999876542 1122 46677676544 456666665442 111
Q ss_pred C-----ccccChhh------HHHHHHHHHH--cCCcEEEEEccccc
Q 003192 163 F-----LCEESESG------RARRLYARMK--EEKKILVILDDIWA 195 (840)
Q Consensus 163 ~-----~~~~~~~~------~~~~l~~~l~--~~k~~LlVlDdv~~ 195 (840)
. ...++... .+..+.+++. .++.+|+++||+-.
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0 01111111 2234556666 38999999999853
No 417
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.50 E-value=0.069 Score=54.78 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
++|.|+|+.|+||||||+.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 418
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.48 E-value=0.032 Score=65.73 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=36.1
Q ss_pred cccccchHHHHHHHHHHhCC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 83 YQAFDSRISTFKDITNALSN-------------PSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 83 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
+..+.|.++.++.+.+.+.- .....+.++|++|+||||||+.+++....
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 44466777777777766541 12356889999999999999999998753
No 419
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.43 E-value=0.081 Score=54.56 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
....+|+|+|+.|.|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988664
No 420
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.35 E-value=0.076 Score=52.27 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEE
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFV 141 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 141 (840)
...+++|+|+.|.|||||++.+..-... ....+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEE
Confidence 3468999999999999999998754432 2344554
No 421
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.24 E-value=0.065 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.245 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..+++|+|+.|.|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998876
No 422
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.15 E-value=0.074 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998764
No 423
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.15 E-value=0.14 Score=51.21 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
...+|+|+|+.|.||||+++.+......
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 4579999999999999999999886654
No 424
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.05 E-value=0.077 Score=52.27 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+++|+|+.|.|||||++.+..-..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999876543
No 425
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.04 E-value=0.11 Score=54.53 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=24.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
..+|+|+|+.|+||||+++.++......
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 4699999999999999999999877643
No 426
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.04 E-value=0.071 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|.|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987543
No 427
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.01 E-value=0.17 Score=52.24 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=28.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV 143 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 143 (840)
...+|+|+|.+|+||||++..++....... ..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 356999999999999999999988776431 23555543
No 428
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.00 E-value=0.34 Score=60.71 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=51.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhH-HHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGR-ARRLYA 178 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~-~~~l~~ 178 (840)
..+|.|.|.+|+||||||.+++...... =..++|++.....+.. .++.++.+... ....+. ...+.+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 4699999999999999999998876543 2257888776655442 15666643221 111122 222222
Q ss_pred HHHcCCcEEEEEccccc
Q 003192 179 RMKEEKKILVILDDIWA 195 (840)
Q Consensus 179 ~l~~~k~~LlVlDdv~~ 195 (840)
...+.+.-++|+|.+..
T Consensus 805 lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHccCCCEEEEechhh
Confidence 22234567999999753
No 429
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.97 E-value=0.33 Score=47.97 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=31.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH-hhccCCCCcEEEEEeCCCccHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ-VKGHKLFDEVVFVDVPQIPDIKKMQGQI 156 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~~~~~~~~i 156 (840)
..++.|.|.+|+|||++|.+++.. .... -..+++++... +.+++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccC--CHHHHHHHH
Confidence 468999999999999999987644 3222 23466666543 345544443
No 430
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.93 E-value=0.081 Score=53.00 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987644
No 431
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.93 E-value=0.11 Score=51.18 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+|+|+|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988664
No 432
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.86 E-value=0.089 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...|+|+|.+|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4588999999999999999988753
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.86 E-value=0.35 Score=46.57 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=26.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCc
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDE 137 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~ 137 (840)
..+|.|-|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 3689999999999999999999988754 3544
No 434
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.82 E-value=0.1 Score=53.29 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+...+|+|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999998766
No 435
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.74 E-value=0.069 Score=54.98 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
.++|.|+|+.|+||||||..++..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998754
No 436
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.73 E-value=0.1 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
...+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998874
No 437
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.72 E-value=0.089 Score=52.64 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+++|+|+.|.|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999987543
No 438
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.71 E-value=0.079 Score=53.38 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..+++|+|+.|.|||||++.+..-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998754
No 439
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.68 E-value=0.1 Score=52.92 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.++|.|.|+.|+||||||..+++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999998753
No 440
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.62 E-value=0.095 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..+++|+|+.|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998874
No 441
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.57 E-value=0.13 Score=55.88 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQVKGH 132 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 132 (840)
...+|+|+|..|+||||+++.++......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 34699999999999999999999877643
No 442
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.57 E-value=0.13 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..++.+.|.||+||||++..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999988776
No 443
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.56 E-value=0.27 Score=53.56 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=40.9
Q ss_pred HHHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHH
Q 003192 95 DITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQI 156 (840)
Q Consensus 95 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i 156 (840)
++++.+.. .....++|.|..|+|||+|+..+++... -+.++++-+.+.. .+.++.+++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 35555552 2346899999999999999999877532 3577888887765 455555554
No 444
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.48 E-value=0.097 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+++|+|+.|.|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999987643
No 445
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.46 E-value=0.23 Score=53.68 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=57.3
Q ss_pred HHHHHhCC-CCccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCC-cEEEEEeCCCc-cHHHHHHHHHHHhCCCc------
Q 003192 95 DITNALSN-PSVDMIGICGMGGIGKTMLV-KEIARQVKGHKLFD-EVVFVDVPQIP-DIKKMQGQIADELGLFL------ 164 (840)
Q Consensus 95 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------ 164 (840)
+.++.+.. .....++|+|.+|+|||+|| ..+.+... -+ .++++-+.+.. .+.++.+.+...=....
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 35555541 23357899999999999995 47777642 44 34777777655 45666666654322111
Q ss_pred -cccChhh------HHHHHHHHHH-cCCcEEEEEccccc
Q 003192 165 -CEESESG------RARRLYARMK-EEKKILVILDDIWA 195 (840)
Q Consensus 165 -~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 195 (840)
..++... ....+.+++. .++.+|+++||+..
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 0111111 1223344444 47899999999853
No 446
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.44 E-value=0.094 Score=52.61 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=25.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEE
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFV 141 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 141 (840)
..+++|+|+.|.|||||++.+..-... ....+++
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~~ 70 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHL 70 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCC---SSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEE
Confidence 468999999999999999998764432 2345544
No 447
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.40 E-value=0.1 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+++|+|+.|.|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987643
No 448
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.40 E-value=0.089 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|.|||||++.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987644
No 449
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.39 E-value=0.12 Score=46.96 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
+.|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 450
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.38 E-value=0.098 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+++|+|+.|.|||||++.++.-..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46899999999999999999876543
No 451
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.36 E-value=0.084 Score=50.98 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|.|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987643
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.34 E-value=0.11 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 453
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.33 E-value=0.09 Score=52.53 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|.|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987644
No 454
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.32 E-value=0.1 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..+++|+|+.|.|||||++.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999998764
No 455
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.30 E-value=0.099 Score=51.85 Aligned_cols=25 Identities=44% Similarity=0.609 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|.|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987644
No 456
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.29 E-value=0.32 Score=50.75 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=34.4
Q ss_pred hCCCCccEEEEEcCCCCcHHHHHHHHHHHhh--ccCCCCcEEEEEeCCCccH
Q 003192 100 LSNPSVDMIGICGMGGIGKTMLVKEIARQVK--GHKLFDEVVFVDVPQIPDI 149 (840)
Q Consensus 100 l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~ 149 (840)
+.++..+++.+.|.||+||||+|..++.... .. =..++-|+.....+.
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~l 62 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHNL 62 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCCh
Confidence 3455668999999999999999999988776 33 124666666544433
No 457
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.29 E-value=0.12 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998864
No 458
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.26 E-value=0.12 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIAR 127 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~ 127 (840)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999875
No 459
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.25 E-value=0.1 Score=52.49 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+++|+|+.|.|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987644
No 460
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.17 E-value=0.2 Score=55.04 Aligned_cols=45 Identities=9% Similarity=-0.116 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHhC--CCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 003192 87 DSRISTFKDITNALS--NPSVDMIGICGMGGIGKTMLVKEIARQVKG 131 (840)
Q Consensus 87 ~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 131 (840)
..|.+..+.+.+... .....+|.+.|++|+||||+|+.++.....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 345555555555442 224468999999999999999999999864
No 461
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.16 E-value=0.52 Score=59.94 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHHhCCCccc-----cChhhHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADELGLFLCE-----ESESGRARRLYAR 179 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 179 (840)
..+|.|+|++|+||||||.+++...... =..++|++.....+... ++.++.+... ....+.+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4799999999999999999998876543 23588888777666432 5566654321 1122222223333
Q ss_pred H-HcCCcEEEEEccccc
Q 003192 180 M-KEEKKILVILDDIWA 195 (840)
Q Consensus 180 l-~~~k~~LlVlDdv~~ 195 (840)
+ ...+.-++|+|-+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 2 234566999998753
No 462
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.09 E-value=0.12 Score=49.54 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 92 TFKDITNALSNPSVDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 92 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..+.+.+.......-.|+|+|.+|+|||||+..+.+.
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3344444444444567899999999999999888764
No 463
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.01 E-value=0.66 Score=50.84 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=40.5
Q ss_pred HHHHHhCC-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCc-cHHHHHHHH
Q 003192 95 DITNALSN-PSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIP-DIKKMQGQI 156 (840)
Q Consensus 95 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i 156 (840)
++++.|.. .....++|.|..|+|||+|+..+++... -+.++++-+.+.. .+.++.+++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 35555552 2346899999999999999999988643 3567888777653 444555443
No 464
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.00 E-value=0.13 Score=54.19 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
+...+|+|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345799999999999999999999754
No 465
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.99 E-value=0.11 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|.|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999987543
No 466
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.99 E-value=0.36 Score=52.26 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=58.0
Q ss_pred HHHHhCC-CCccEEEEEcCCCCcHHHHH-HHHHHHhhc----cCCCC-cEEEEEeCCCc-cHHHHHHHHHHHhCCCc---
Q 003192 96 ITNALSN-PSVDMIGICGMGGIGKTMLV-KEIARQVKG----HKLFD-EVVFVDVPQIP-DIKKMQGQIADELGLFL--- 164 (840)
Q Consensus 96 l~~~l~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~--- 164 (840)
.++.+.. .....++|+|.+|+|||+|| ..+.+.... ..+-+ .++++-+.+.. .+.++.+.+...=....
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 4555541 23357899999999999995 567776652 11234 46777787665 45666666654221110
Q ss_pred ----cccChhh------HHHHHHHHHH-cCCcEEEEEccccc
Q 003192 165 ----CEESESG------RARRLYARMK-EEKKILVILDDIWA 195 (840)
Q Consensus 165 ----~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 195 (840)
..++... ....+.+++. .++.+|+++||+..
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 0111111 1223334444 47899999999854
No 467
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.96 E-value=0.11 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|.|||||++.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999987644
No 468
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.94 E-value=0.2 Score=54.23 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=56.2
Q ss_pred HHHHhCC-CCccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCCc-EEEEEeCCCc-cHHHHHHHHHHHhCCCc-------
Q 003192 96 ITNALSN-PSVDMIGICGMGGIGKTMLV-KEIARQVKGHKLFDE-VVFVDVPQIP-DIKKMQGQIADELGLFL------- 164 (840)
Q Consensus 96 l~~~l~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~------- 164 (840)
.++.+.. .....++|+|.+|+|||+|| ..+.+... -+. ++++-+.+.. .+.++.+.+...=....
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 4555541 23357899999999999996 47777542 443 4777777654 45666666654211110
Q ss_pred cccChhh------HHHHHHHHHH-cCCcEEEEEccccc
Q 003192 165 CEESESG------RARRLYARMK-EEKKILVILDDIWA 195 (840)
Q Consensus 165 ~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 195 (840)
..++... ....+.+++. +++.+|+++||+..
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 0111111 1223334444 47899999999854
No 469
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.91 E-value=0.37 Score=46.36 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCC
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQ 145 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 145 (840)
.|.+.|.||+||||+|..++.....+ .++ +.++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCC-EEEEEeCC
Confidence 57889999999999999998887654 243 44455544
No 470
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.89 E-value=0.27 Score=46.40 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998764
No 471
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.88 E-value=0.12 Score=48.65 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 003192 107 MIGICGMGGIGKTMLVKEIAR 127 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~ 127 (840)
.|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998875
No 472
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.85 E-value=0.12 Score=51.97 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
.|+|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 473
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.80 E-value=0.13 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
++|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998764
No 474
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.78 E-value=0.11 Score=52.49 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+++|+|+.|.|||||++.++.-..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46899999999999999999876543
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.74 E-value=0.11 Score=56.05 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 103 PSVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 103 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
....+|.|+|++|+||||+|+.++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999987654
No 476
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.72 E-value=0.11 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|.|||||++.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987654
No 477
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.52 E-value=0.13 Score=52.19 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..++.|+|++|+||||||..++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46999999999999999999887554
No 478
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.50 E-value=0.68 Score=51.32 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=37.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIADE 159 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 159 (840)
..++.|.|.+|+||||||.+++.....+. =..++|++... +.+++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHH
Confidence 46899999999999999999988765431 12477776643 456666666443
No 479
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.46 E-value=0.38 Score=49.93 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=34.4
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHH
Q 003192 101 SNPSVDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIK 150 (840)
Q Consensus 101 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 150 (840)
.+...+++.+.|.||+||||+|..++....... ..++-|+.....+..
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAHNLS 59 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSCHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCCCChh
Confidence 345567888889999999999999998876542 246666666544333
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.45 E-value=0.15 Score=50.35 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...|.|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998763
No 481
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.43 E-value=0.12 Score=48.68 Aligned_cols=25 Identities=24% Similarity=0.233 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
.+.|.|.|++|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998754
No 482
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.39 E-value=0.44 Score=45.75 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=31.4
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHH
Q 003192 107 MIGIC-GMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKK 151 (840)
Q Consensus 107 vi~I~-G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 151 (840)
+|+|+ +.||+||||+|..++....... .++-++.....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHH
Confidence 67776 7899999999999998887542 577777766554443
No 483
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=90.37 E-value=0.06 Score=46.07 Aligned_cols=21 Identities=0% Similarity=-0.173 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHhHhhhhhhh
Q 003192 4 SGANKIIDEAVKSIEGADRAK 24 (840)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (840)
.+|||++|++||+++++..+.
T Consensus 62 ~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 62 DEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999987443
No 484
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.36 E-value=0.99 Score=48.88 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=35.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIAD 158 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 158 (840)
..++.|.|.+|+||||+|.+++.....+. ..++|++.. .+.+++...+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE--ms~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS--SCTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC--CCHHHHHHHHHH
Confidence 46899999999999999999988765441 246776544 344555555544
No 485
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.30 E-value=0.17 Score=49.02 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
...+||.|++|+||||+|+.+.+.+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998775
No 486
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.30 E-value=0.13 Score=55.43 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEe
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDV 143 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 143 (840)
..+|.|+|.+|+||||+|..++.....+. + .++.++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G-~-kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG-L-KPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH-C-CEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEec
Confidence 46999999999999999999988765431 2 2455543
No 487
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.27 E-value=0.16 Score=46.57 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
.-.|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998864
No 488
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.27 E-value=0.59 Score=44.35 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCCccHHHHHHHHHH
Q 003192 107 MIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQIPDIKKMQGQIAD 158 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 158 (840)
.|+|=|.-|+||||.++.+++.+..+. . .+++..-+......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~-~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-K-KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCcHHHHHHHHhh
Confidence 578889999999999999999887652 2 3444444433344455555543
No 489
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.19 E-value=0.34 Score=48.64 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCcEEEEEeCCC
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQVKGHKLFDEVVFVDVPQI 146 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 146 (840)
++|+|.|.||+||||+|..++..+.... . .++-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G-~-~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG-K-TIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT-C-CEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC-C-cEEEEcCCCC
Confidence 5788899999999999999998876432 2 4666666543
No 490
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.15 E-value=0.31 Score=51.35 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
+.++|+|+|.+|+|||||...+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999988753
No 491
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.13 E-value=0.18 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+++|+|+.|.|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34799999999999999999987643
No 492
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.10 E-value=0.15 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 003192 107 MIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 107 vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998765
No 493
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.07 E-value=0.13 Score=52.63 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
...+|+|+|+.|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 35799999999999999999987643
No 494
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.01 E-value=0.17 Score=47.51 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998763
No 495
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.01 E-value=1.2 Score=48.14 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=56.2
Q ss_pred HHHHhC-CCCccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCC-cEEEEEeCCCc-cHHHHHHHHHHHhCCCc-------
Q 003192 96 ITNALS-NPSVDMIGICGMGGIGKTMLV-KEIARQVKGHKLFD-EVVFVDVPQIP-DIKKMQGQIADELGLFL------- 164 (840)
Q Consensus 96 l~~~l~-~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------- 164 (840)
.++.+. =.....++|.|..|+|||+|| ..+.+.. +-+ .++++-+++.. .+.++.+++.+.=....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 444444 123357899999999999996 5666642 234 35788888765 46667776654321111
Q ss_pred cccChhh------HHHHHHHHHH-cCCcEEEEEccccc
Q 003192 165 CEESESG------RARRLYARMK-EEKKILVILDDIWA 195 (840)
Q Consensus 165 ~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 195 (840)
..++... ....+.+++. +++.+|+++||+..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 0111111 1223334443 47899999999854
No 496
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.00 E-value=0.17 Score=52.88 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQVK 130 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 130 (840)
..+++|+|+.|+|||||.+.++--..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 46899999999999999999886443
No 497
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.97 E-value=0.12 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 003192 104 SVDMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 104 ~~~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999998764
No 498
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.95 E-value=0.33 Score=48.11 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=28.8
Q ss_pred HHHHHHHhCCC--CccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 93 FKDITNALSNP--SVDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 93 ~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..-+..|+... ...-|.++|++|+|||++|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34466776643 34579999999999999999999863
No 499
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.93 E-value=0.15 Score=51.06 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 003192 105 VDMIGICGMGGIGKTMLVKEIARQV 129 (840)
Q Consensus 105 ~~vi~I~G~~GiGKTtLa~~v~~~~ 129 (840)
..+++|+|+.|.|||||++.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987543
No 500
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.91 E-value=0.17 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 003192 106 DMIGICGMGGIGKTMLVKEIARQ 128 (840)
Q Consensus 106 ~vi~I~G~~GiGKTtLa~~v~~~ 128 (840)
..|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
Done!