Query 003193
Match_columns 840
No_of_seqs 762 out of 4097
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 18:49:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-60 3.3E-65 546.7 22.1 357 3-389 305-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.9E-52 6.2E-57 507.3 35.4 580 3-749 339-944 (1153)
3 PLN00113 leucine-rich repeat r 100.0 2.2E-34 4.7E-39 352.3 26.3 483 209-777 92-588 (968)
4 PLN00113 leucine-rich repeat r 100.0 6.4E-33 1.4E-37 339.4 25.0 481 208-773 116-607 (968)
5 PLN03210 Resistant to P. syrin 99.9 1.3E-23 2.8E-28 256.8 30.3 345 207-612 555-910 (1153)
6 KOG4194 Membrane glycoprotein 99.9 1.9E-24 4.1E-29 222.8 5.9 394 205-684 47-447 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 7.9E-27 1.7E-31 230.0 -12.4 477 213-772 48-540 (565)
8 KOG4194 Membrane glycoprotein 99.9 4.8E-23 1E-27 212.5 7.2 338 207-566 99-447 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 1.6E-25 3.4E-30 220.9 -10.8 455 230-770 43-515 (565)
10 KOG0618 Serine/threonine phosp 99.9 1.5E-24 3.3E-29 235.7 -6.5 81 421-510 239-319 (1081)
11 KOG0444 Cytoskeletal regulator 99.9 8.3E-24 1.8E-28 219.3 -4.4 341 207-576 29-380 (1255)
12 KOG0444 Cytoskeletal regulator 99.9 2.1E-23 4.6E-28 216.3 -3.3 329 197-549 40-379 (1255)
13 KOG0618 Serine/threonine phosp 99.8 1.3E-23 2.9E-28 228.4 -6.5 99 212-312 47-147 (1081)
14 PF00931 NB-ARC: NB-ARC domain 99.8 6.5E-21 1.4E-25 199.3 4.8 133 7-141 149-285 (287)
15 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.6E-22 144.6 -4.8 151 208-362 31-185 (264)
16 KOG0617 Ras suppressor protein 99.6 2.3E-17 4.9E-22 144.5 -5.1 167 222-400 23-192 (264)
17 KOG4237 Extracellular matrix p 99.6 3E-17 6.5E-22 162.7 -5.2 141 197-361 54-199 (498)
18 PRK15387 E3 ubiquitin-protein 99.5 9E-14 2E-18 157.8 17.6 244 200-485 212-456 (788)
19 PRK15387 E3 ubiquitin-protein 99.5 1.3E-13 2.7E-18 156.7 15.5 255 210-543 201-456 (788)
20 PRK15370 E3 ubiquitin-protein 99.5 2.7E-13 5.8E-18 155.2 14.2 243 213-485 181-426 (754)
21 PRK15370 E3 ubiquitin-protein 99.4 3.6E-13 7.8E-18 154.1 11.9 245 200-479 189-438 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.4 9.1E-13 2E-17 153.2 8.1 126 208-334 543-677 (889)
23 KOG4341 F-box protein containi 99.1 1.2E-12 2.7E-17 131.5 -9.1 142 645-799 317-460 (483)
24 KOG4341 F-box protein containi 99.0 4.8E-12 1E-16 127.4 -7.2 273 448-775 139-416 (483)
25 KOG0532 Leucine-rich repeat (L 99.0 1.5E-11 3.3E-16 128.3 -4.4 178 209-400 74-253 (722)
26 KOG4237 Extracellular matrix p 99.0 1.1E-11 2.4E-16 123.7 -6.0 258 200-485 78-357 (498)
27 cd00116 LRR_RI Leucine-rich re 99.0 1.7E-10 3.8E-15 122.9 2.2 158 230-393 21-205 (319)
28 KOG0532 Leucine-rich repeat (L 98.9 4.1E-11 8.9E-16 125.2 -3.5 149 209-363 97-247 (722)
29 PF14580 LRR_9: Leucine-rich r 98.9 9.8E-10 2.1E-14 102.3 5.6 118 211-331 20-146 (175)
30 PF14580 LRR_9: Leucine-rich r 98.9 6E-10 1.3E-14 103.7 4.2 106 255-362 17-125 (175)
31 cd00116 LRR_RI Leucine-rich re 98.9 3.5E-10 7.5E-15 120.6 2.9 180 209-394 22-234 (319)
32 KOG1259 Nischarin, modulator o 98.9 1.7E-10 3.7E-15 110.9 -0.0 135 255-398 282-416 (490)
33 COG4886 Leucine-rich repeat (L 98.7 1.3E-08 2.8E-13 111.7 5.9 169 231-411 115-285 (394)
34 KOG1259 Nischarin, modulator o 98.7 1.6E-09 3.4E-14 104.4 -1.2 128 231-363 283-412 (490)
35 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.3E-13 111.1 6.2 172 210-394 116-290 (394)
36 KOG3207 Beta-tubulin folding c 98.6 7.6E-09 1.6E-13 105.3 0.8 189 207-397 118-317 (505)
37 PLN03150 hypothetical protein; 98.5 3.8E-07 8.2E-12 104.8 9.8 104 258-362 419-527 (623)
38 KOG3207 Beta-tubulin folding c 98.4 4E-08 8.6E-13 100.2 0.4 181 207-394 143-339 (505)
39 PLN03150 hypothetical protein; 98.4 6.9E-07 1.5E-11 102.6 9.0 105 281-393 419-527 (623)
40 PF13855 LRR_8: Leucine rich r 98.4 2.6E-07 5.7E-12 70.4 3.6 55 258-312 2-59 (61)
41 PRK15386 type III secretion pr 98.3 9.6E-07 2.1E-11 92.4 7.8 37 532-574 52-88 (426)
42 PF13855 LRR_8: Leucine rich r 98.3 5.9E-07 1.3E-11 68.4 3.8 58 303-361 2-60 (61)
43 PRK15386 type III secretion pr 98.2 2.3E-06 4.9E-11 89.7 7.6 42 555-613 49-90 (426)
44 KOG0531 Protein phosphatase 1, 98.1 3.6E-07 7.7E-12 100.3 -2.3 128 230-362 70-198 (414)
45 KOG3665 ZYG-1-like serine/thre 98.1 1.5E-06 3.3E-11 99.3 2.7 126 208-334 120-259 (699)
46 KOG0531 Protein phosphatase 1, 98.1 4.3E-07 9.3E-12 99.7 -1.9 172 210-396 72-247 (414)
47 KOG2120 SCF ubiquitin ligase, 98.1 9.6E-08 2.1E-12 92.4 -6.0 84 258-362 186-272 (419)
48 KOG1859 Leucine-rich repeat pr 98.1 4.3E-08 9.4E-13 105.7 -9.8 176 208-395 107-293 (1096)
49 PF12799 LRR_4: Leucine Rich r 98.0 6.3E-06 1.4E-10 57.2 3.6 37 258-294 2-38 (44)
50 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 55.5 4.2 38 303-341 2-39 (44)
51 KOG2120 SCF ubiquitin ligase, 97.9 4.2E-07 9E-12 88.1 -5.9 173 210-391 185-373 (419)
52 KOG1947 Leucine rich repeat pr 97.7 2.8E-06 6E-11 96.4 -3.4 118 446-571 187-308 (482)
53 KOG3665 ZYG-1-like serine/thre 97.7 2.5E-05 5.4E-10 89.5 3.6 104 231-334 121-229 (699)
54 KOG1909 Ran GTPase-activating 97.7 5.9E-06 1.3E-10 82.5 -1.6 181 211-394 93-311 (382)
55 KOG1859 Leucine-rich repeat pr 97.6 1.2E-06 2.5E-11 95.1 -7.4 123 209-334 163-288 (1096)
56 KOG4579 Leucine-rich repeat (L 97.6 5.9E-06 1.3E-10 70.9 -2.0 107 213-320 30-141 (177)
57 KOG2982 Uncharacterized conser 97.5 1.6E-05 3.5E-10 77.4 -0.4 64 321-392 93-157 (418)
58 KOG1644 U2-associated snRNP A' 97.5 0.00016 3.6E-09 66.7 5.3 81 254-334 61-149 (233)
59 KOG1644 U2-associated snRNP A' 97.4 0.00035 7.7E-09 64.6 6.2 100 258-359 43-149 (233)
60 KOG1947 Leucine rich repeat pr 97.3 3.2E-05 6.8E-10 87.7 -1.3 222 499-776 186-417 (482)
61 KOG4579 Leucine-rich repeat (L 97.2 6.5E-05 1.4E-09 64.7 -0.8 90 254-344 50-141 (177)
62 KOG2982 Uncharacterized conser 97.2 0.00014 3.1E-09 71.0 1.1 85 230-314 69-158 (418)
63 KOG1909 Ran GTPase-activating 97.1 0.00019 4.1E-09 72.0 1.7 127 208-334 155-307 (382)
64 COG5238 RNA1 Ran GTPase-activa 97.0 0.00036 7.8E-09 67.4 1.8 87 254-341 27-135 (388)
65 KOG2739 Leucine-rich acidic nu 96.2 0.0018 4E-08 62.8 1.3 81 254-335 40-126 (260)
66 KOG2123 Uncharacterized conser 96.0 0.00025 5.4E-09 68.7 -5.9 78 281-360 20-98 (388)
67 KOG2739 Leucine-rich acidic nu 95.9 0.0038 8.3E-08 60.6 1.6 82 254-335 62-153 (260)
68 PF00560 LRR_1: Leucine Rich R 95.8 0.0038 8.3E-08 35.9 0.9 21 303-323 1-21 (22)
69 KOG3864 Uncharacterized conser 95.8 0.0015 3.3E-08 60.6 -1.3 10 651-660 104-113 (221)
70 KOG2123 Uncharacterized conser 95.5 0.00091 2E-08 64.9 -4.1 77 231-311 18-97 (388)
71 KOG3864 Uncharacterized conser 95.1 0.0055 1.2E-07 57.0 -0.3 69 498-572 122-190 (221)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.0066 1.4E-07 34.9 0.1 21 258-278 1-21 (22)
73 COG5238 RNA1 Ran GTPase-activa 94.8 0.025 5.4E-07 55.1 3.4 88 230-317 28-135 (388)
74 PF13504 LRR_7: Leucine rich r 94.2 0.033 7.2E-07 29.6 1.6 16 303-318 2-17 (17)
75 PF13306 LRR_5: Leucine rich r 93.9 0.16 3.4E-06 45.4 6.5 103 250-358 5-111 (129)
76 PF13306 LRR_5: Leucine rich r 93.7 0.18 3.9E-06 45.0 6.4 115 230-352 10-128 (129)
77 PF13504 LRR_7: Leucine rich r 93.1 0.058 1.3E-06 28.6 1.3 16 258-273 2-17 (17)
78 PRK04841 transcriptional regul 91.1 0.79 1.7E-05 56.6 9.5 150 9-187 176-332 (903)
79 KOG0473 Leucine-rich repeat pr 90.7 0.0069 1.5E-07 57.4 -6.7 80 255-334 40-120 (326)
80 smart00370 LRR Leucine-rich re 89.9 0.27 5.9E-06 29.5 2.1 19 302-320 2-20 (26)
81 smart00369 LRR_TYP Leucine-ric 89.9 0.27 5.9E-06 29.5 2.1 19 302-320 2-20 (26)
82 KOG0473 Leucine-rich repeat pr 85.9 0.027 5.9E-07 53.5 -6.1 86 275-362 37-123 (326)
83 smart00370 LRR Leucine-rich re 85.7 0.82 1.8E-05 27.3 2.4 21 256-276 1-21 (26)
84 smart00369 LRR_TYP Leucine-ric 85.7 0.82 1.8E-05 27.3 2.4 21 256-276 1-21 (26)
85 PRK00080 ruvB Holliday junctio 80.0 24 0.00053 37.3 12.4 108 8-129 173-283 (328)
86 smart00367 LRR_CC Leucine-rich 77.8 1.1 2.3E-05 26.9 0.8 16 676-691 2-17 (26)
87 TIGR03015 pepcterm_ATPase puta 75.9 11 0.00025 38.4 8.4 70 8-77 185-266 (269)
88 TIGR00635 ruvB Holliday juncti 75.1 30 0.00066 36.1 11.5 127 8-167 152-289 (305)
89 smart00364 LRR_BAC Leucine-ric 68.5 3.5 7.6E-05 24.6 1.4 18 257-274 2-19 (26)
90 smart00365 LRR_SD22 Leucine-ri 66.3 4.6 0.0001 24.2 1.6 15 302-316 2-16 (26)
91 KOG4308 LRR-containing protein 65.1 0.091 2E-06 58.0 -10.5 178 212-394 89-303 (478)
92 PF13516 LRR_6: Leucine Rich r 56.8 7.4 0.00016 22.6 1.4 14 648-661 2-15 (24)
93 smart00368 LRR_RI Leucine rich 43.2 17 0.00037 22.1 1.5 13 281-293 3-15 (28)
94 cd00923 Cyt_c_Oxidase_Va Cytoc 25.4 2.6E+02 0.0057 23.3 5.8 60 19-78 22-87 (103)
95 PRK06893 DNA replication initi 23.5 1.8E+02 0.0039 28.8 5.9 51 5-56 151-201 (229)
96 KOG3763 mRNA export factor TAP 21.7 31 0.00068 38.1 0.1 43 444-487 241-283 (585)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-60 Score=546.73 Aligned_cols=357 Identities=29% Similarity=0.436 Sum_probs=282.7
Q ss_pred CCCCCceEEccCCCHHHHHHHHHHHhCCC--CCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCC-CHHHHHHHHHHhhc
Q 003193 3 SYEYSEDFLDWLLSNEEASHLFEKIVGHS--AKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSN 79 (840)
Q Consensus 3 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~--~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~-~~~~W~~~l~~l~~ 79 (840)
+||+..++++++|+++|||+||++.||+. ..++.++++|++||+||+|+|||++++|+.|+.| +.++|+++.+.+.+
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 48999999999999999999999999944 4556699999999999999999999999999977 88999999999988
Q ss_pred CCCCCccccccc-ccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHHH
Q 003193 80 SNPRKIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNL 158 (840)
Q Consensus 80 ~~~~~~~~~~~~-~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~L 158 (840)
....++.++++. +++|++|||+||++ +|.||+|||+|||||+|++++|+.+||||||+++....+.+++.|++|+.+|
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 866566666666 89999999999965 9999999999999999999999999999999988666778899999999999
Q ss_pred hhccccccCC---CCCceEeehhHHHHHHHHHh-----hceEeEEecCccchhhhh-hccCCCcEEEeccCCcccCCccc
Q 003193 159 KSASLLFDGD---SEDHAKMHRIIHAIAVSIAA-----EKLLFNIQNVADLKEELD-KIDEAPTAISIPFRGIYELPERL 229 (840)
Q Consensus 159 ~~~~l~~~~~---~~~~~~mhdli~~l~~~i~~-----~e~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~l~~~~ 229 (840)
+.+++++..+ +..+|+|||+|||||.++|+ ++..+ +..+......|+ ..+..+|++++.++.+..++...
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 9999998875 45789999999999999999 55522 444334444555 66789999999999999999888
Q ss_pred CCCcceeEeeccCcc-ccCCCchhhcCCCCCcEEEcCCCC-CCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEE
Q 003193 230 GFLKLKLFLFFTENL-SLQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L 307 (840)
.+++|++|.+.+|.. ...++..+|..++.||+||+++|. +..+|++|++|.|||||+++++.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--------------- 607 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--------------- 607 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc---------------
Confidence 899999999999874 557888889999999999999764 568888888888777777776654
Q ss_pred eecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEE
Q 003193 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLE 387 (840)
Q Consensus 308 ~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 387 (840)
+.+|.++++|+.|.+|++..+..+..+| +.+..|.+||+|.+..... ..+...+.++.++.+|+.+.
T Consensus 608 -------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~-----~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 608 -------SHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSAL-----SNDKLLLKELENLEHLENLS 674 (889)
T ss_pred -------cccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecccc-----ccchhhHHhhhcccchhhhe
Confidence 4555555555555555555544443332 2234455666555543321 11123345555555565555
Q ss_pred Ee
Q 003193 388 VH 389 (840)
Q Consensus 388 l~ 389 (840)
+.
T Consensus 675 ~~ 676 (889)
T KOG4658|consen 675 IT 676 (889)
T ss_pred ee
Confidence 53
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.9e-52 Score=507.26 Aligned_cols=580 Identities=21% Similarity=0.286 Sum_probs=385.1
Q ss_pred CCCCCceEEccCCCHHHHHHHHHHHhCC-CCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCC
Q 003193 3 SYEYSEDFLDWLLSNEEASHLFEKIVGH-SAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSN 81 (840)
Q Consensus 3 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~-~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~ 81 (840)
.++++++|+++.|+++|||+||+++||. ..+++++++++++||++|+|+||||+++|+.|++++.++|+++++++++..
T Consensus 339 ~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~ 418 (1153)
T PLN03210 339 AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL 418 (1153)
T ss_pred hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc
Confidence 5678899999999999999999999994 445668999999999999999999999999999999999999999988654
Q ss_pred CCCcccccccccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhhc
Q 003193 82 PRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSA 161 (840)
Q Consensus 82 ~~~~~~~~~~~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~L~~~ 161 (840)
..+| .++|++|||+|+++..|.||+|||+||.++.+ + .+..|+|.+.+.. ...++.|+++
T Consensus 419 ~~~I------~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~--~-~v~~~l~~~~~~~-----------~~~l~~L~~k 478 (1153)
T PLN03210 419 DGKI------EKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV--N-DIKLLLANSDLDV-----------NIGLKNLVDK 478 (1153)
T ss_pred cHHH------HHHHHHhhhccCccchhhhhheehhhcCCCCH--H-HHHHHHHhcCCCc-----------hhChHHHHhc
Confidence 3222 78899999999874489999999999998544 3 3666777765431 1248889999
Q ss_pred cccccCCCCCceEeehhHHHHHHHHHhhce------EeEEecCccchhhhh--hccCCCcEEEeccCCcccCC--c--cc
Q 003193 162 SLLFDGDSEDHAKMHRIIHAIAVSIAAEKL------LFNIQNVADLKEELD--KIDEAPTAISIPFRGIYELP--E--RL 229 (840)
Q Consensus 162 ~l~~~~~~~~~~~mhdli~~l~~~i~~~e~------~~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~l~--~--~~ 229 (840)
||++.. .+.++|||++|+||+.+++++. .+.+... ++..+.. ...++++.+++..+.+..+. . ..
T Consensus 479 sLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~-di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 479 SLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK-DICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555 (1153)
T ss_pred CCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH-HHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence 999775 3579999999999999998763 1112211 1111111 23456777777766554321 1 12
Q ss_pred CCCcceeEeeccCc------cccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCC
Q 003193 230 GFLKLKLFLFFTEN------LSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLK 302 (840)
Q Consensus 230 ~~~~L~~L~l~~~~------~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~ 302 (840)
++++|+.|.+..+. ....+|..+..-..+||.|++.++.++.+|..+ ...+|+.|++.+|.+.. +..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 57777777775432 223455554332345777777777777777666 45677777777777666 66667777
Q ss_pred CCCEEeecCC-CCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCC
Q 003193 303 KLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS 381 (840)
Q Consensus 303 ~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 381 (840)
+|++|+++++ .++.+|. ++.+++|++|++++|..+..+|.. ++++++|+.|++++|......+ ..+ +++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp-------~~i-~l~ 704 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP-------TGI-NLK 704 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-------CcC-CCC
Confidence 7777777765 4566663 667777777777777777777765 6777777777777654222111 011 344
Q ss_pred CCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccc
Q 003193 382 RLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFK 461 (840)
Q Consensus 382 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 461 (840)
+|+.|+++++... +. +|. ..++|+.|++.++. ++
T Consensus 705 sL~~L~Lsgc~~L-----------~~------------------------------~p~----~~~nL~~L~L~~n~-i~ 738 (1153)
T PLN03210 705 SLYRLNLSGCSRL-----------KS------------------------------FPD----ISTNISWLDLDETA-IE 738 (1153)
T ss_pred CCCEEeCCCCCCc-----------cc------------------------------ccc----ccCCcCeeecCCCc-cc
Confidence 4445444432110 00 000 02345555555443 22
Q ss_pred cccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEec
Q 003193 462 NVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEG 541 (840)
Q Consensus 462 ~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 541 (840)
.+|..+ .+++|++|.+.++.....+ . .+..+. + .....+++|+.|++++
T Consensus 739 ~lP~~~----~l~~L~~L~l~~~~~~~l~-~--------------------~~~~l~----~--~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 739 EFPSNL----RLENLDELILCEMKSEKLW-E--------------------RVQPLT----P--LMTMLSPSLTRLFLSD 787 (1153)
T ss_pred cccccc----cccccccccccccchhhcc-c--------------------cccccc----h--hhhhccccchheeCCC
Confidence 333221 3455555555444311100 0 000000 0 0012357899999999
Q ss_pred CCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCcc
Q 003193 542 CHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNT 621 (840)
Q Consensus 542 c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~ 621 (840)
|+.+..+|. .+.++++|+.|+|.+|..++.++.. ..+++|+.|++++|.++..++..
T Consensus 788 n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~--------------~~L~sL~~L~Ls~c~~L~~~p~~------- 844 (1153)
T PLN03210 788 IPSLVELPS--SIQNLHKLEHLEIENCINLETLPTG--------------INLESLESLDLSGCSRLRTFPDI------- 844 (1153)
T ss_pred CCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCC--------------CCccccCEEECCCCCcccccccc-------
Confidence 988888863 3678899999999999988887631 15889999999999888776531
Q ss_pred CCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhh
Q 003193 622 QGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGL 701 (840)
Q Consensus 622 ~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l 701 (840)
.++|+.|+++++.++.+|.. ...+++|+.|++.+|++++.++.. ...+
T Consensus 845 -------------------------~~nL~~L~Ls~n~i~~iP~s-----i~~l~~L~~L~L~~C~~L~~l~~~--~~~L 892 (1153)
T PLN03210 845 -------------------------STNISDLNLSRTGIEEVPWW-----IEKFSNLSFLDMNGCNNLQRVSLN--ISKL 892 (1153)
T ss_pred -------------------------ccccCEeECCCCCCccChHH-----HhcCCCCCEEECCCCCCcCccCcc--cccc
Confidence 46888999999988876643 246799999999999999998653 6778
Q ss_pred cccceeeecccccchhhhccCcc---cc--cCccccccccccccccccCCcce
Q 003193 702 EQLQQLDISHCKSMNEVINTRVG---RD--DNMIEMVFPKLVSLQLSHLPKLT 749 (840)
Q Consensus 702 ~sL~~L~i~~C~~L~~i~~~~~~---~~--~~~~~~~l~sL~~L~i~~c~~L~ 749 (840)
++|+.|++++|++++.+.. +.. .. .......+|+...+.+.+|.+|.
T Consensus 893 ~~L~~L~l~~C~~L~~~~l-~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 893 KHLETVDFSDCGALTEASW-NGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cCCCeeecCCCcccccccC-CCCchhhhhhcccccccCCchhccccccccCCC
Confidence 9999999999998876632 110 00 00011124555666677776664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-34 Score=352.31 Aligned_cols=483 Identities=18% Similarity=0.157 Sum_probs=221.8
Q ss_pred cCCCcEEEeccCCcc-cCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCCCE
Q 003193 209 DEAPTAISIPFRGIY-ELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRT 284 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L~~ 284 (840)
.++++.|++++|.+. .+|... .+++|++|++++|.+.+.+|. ..+++|++|++++|.+. .+|..++++++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 344444444444442 333322 344445555444444444442 23444455555554443 34444555555555
Q ss_pred EEccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 285 LSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 285 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN 247 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce
Confidence 5555554433 444455555555555554443 34444555555555555543322233333 4455555555554443
Q ss_pred ccceecCCCCCCcccccCCCCCCeEEEecCCCC-CCCCcc-cccCcceEEEEEcC----ccCCCCCccccceEEEeeCCC
Q 003193 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-VFVELERFRICIGD----VWSWSDGYETSKTLKLQLNNS 435 (840)
Q Consensus 362 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~----~~~~~~~~~~l~~L~l~~~~~ 435 (840)
+.... ...+.++++|+.|+++.|.+. ..|..+ .+.+|+.|++..+. .+.++...++|+.|++.++..
T Consensus 248 l~~~~-------p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 248 LTGPI-------PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ecccc-------ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 32211 133444445555555444432 122222 34444444443322 122233344444444444333
Q ss_pred cc-chhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccc
Q 003193 436 TY-LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINL 514 (840)
Q Consensus 436 ~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L 514 (840)
.. .|.++. .+++|+.|++++|.....++..+ +.+++|+.|++++|.....+ +.....+++|+.|.+.++.-.
T Consensus 321 ~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l---~~~~~L~~L~Ls~n~l~~~~---p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 321 TGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNL---GKHNNLTVLDLSTNNLTGEI---PEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred CCcCChhHh-cCCCCCEEECcCCCCcCcCChHH---hCCCCCcEEECCCCeeEeeC---ChhHhCcCCCCEEECcCCEec
Confidence 21 222221 23444444444444333333333 33444444444444311111 111223344444444443211
Q ss_pred ccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccc
Q 003193 515 EKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF 594 (840)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l 594 (840)
..++ .....+++|+.|++.+|.-...+| ..+..+++|+.|+++++.-...++. ....+
T Consensus 394 ~~~p-------~~~~~~~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~~~-------------~~~~l 451 (968)
T PLN00113 394 GEIP-------KSLGACRSLRRVRLQDNSFSGELP--SEFTKLPLVYFLDISNNNLQGRINS-------------RKWDM 451 (968)
T ss_pred ccCC-------HHHhCCCCCCEEECcCCEeeeECC--hhHhcCCCCCEEECcCCcccCccCh-------------hhccC
Confidence 1111 112234555555555543222222 1234455555555554432221110 12245
Q ss_pred cccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCcccccc
Q 003193 595 RKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESW 674 (840)
Q Consensus 595 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~ 674 (840)
++|+.|++.+|.-...++.. ...++|+.|++++|.+.......+ ..
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~------------------------------~~~~~L~~L~ls~n~l~~~~~~~~----~~ 497 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDS------------------------------FGSKRLENLDLSRNQFSGAVPRKL----GS 497 (968)
T ss_pred CCCcEEECcCceeeeecCcc------------------------------cccccceEEECcCCccCCccChhh----hh
Confidence 55555555555433322221 134677778887776654322222 45
Q ss_pred CCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCC
Q 003193 675 GKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIG 754 (840)
Q Consensus 675 l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~ 754 (840)
+++|+.|++++|.-...+| ..+.++++|+.|++++|.-...+ |+.+.. +++|+.|++++|.-...+|.
T Consensus 498 l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~------l~~L~~L~Ls~N~l~~~~p~- 565 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIP--DELSSCKKLVSLDLSHNQLSGQI---PASFSE------MPVLSQLDLSQNQLSGEIPK- 565 (968)
T ss_pred hhccCEEECcCCcceeeCC--hHHcCccCCCEEECCCCcccccC---ChhHhC------cccCCEEECCCCcccccCCh-
Confidence 6777788887664333443 23667777888888776543333 444433 77788888877765545553
Q ss_pred CCccCCCcceEEeccCCCcceee
Q 003193 755 DSVEFPSLCQLQIACCPNLKIFI 777 (840)
Q Consensus 755 ~~~~l~sL~~L~i~~C~~L~~l~ 777 (840)
.+.++++|+.|++++|+-...+|
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hHhcCcccCEEeccCCcceeeCC
Confidence 33456778888888877665555
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.4e-33 Score=339.36 Aligned_cols=481 Identities=17% Similarity=0.152 Sum_probs=360.4
Q ss_pred ccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCCCEEE
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLS 286 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L~~L~ 286 (840)
...++++|++++|.+....+...+++|++|++++|.+.+.+|..+ .++++|++|++++|.+. .+|..++++++|++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 568999999999988543333468999999999999987888775 89999999999999986 7899999999999999
Q ss_pred ccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 287 LENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 287 L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
+++|.+.. |..++++++|++|++++|+++ .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+.
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeee
Confidence 99999876 889999999999999999887 78999999999999999996555566765 899999999999998765
Q ss_pred ceecCCCCCCcccccCCCCCCeEEEecCCCC-CCCCcc-cccCcceEEEEEcCc----cCCCCCccccceEEEeeCCCc-
Q 003193 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-VFVELERFRICIGDV----WSWSDGYETSKTLKLQLNNST- 436 (840)
Q Consensus 364 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~l~~L~l~~~~~~- 436 (840)
... ...+.++++|+.|++++|.+. .+|..+ .+++|+.|++..+.. +.++...++|+.|+++++...
T Consensus 274 ~~~-------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 274 GPI-------PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred ccC-------chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 332 256778899999999988775 344443 678899998876543 345667889999999987765
Q ss_pred cchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccccc
Q 003193 437 YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEK 516 (840)
Q Consensus 437 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 516 (840)
..|.++.. +++|+.|++++|......+..+ ..+++|+.|++.+|.....+ ......+++|+.|++.++.--..
T Consensus 347 ~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~---~~~~~L~~L~l~~n~l~~~~---p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 347 EIPKNLGK-HNNLTVLDLSTNNLTGEIPEGL---CSSGNLFKLILFSNSLEGEI---PKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCChHHhC-CCCCcEEECCCCeeEeeCChhH---hCcCCCCEEECcCCEecccC---CHHHhCCCCCCEEECcCCEeeeE
Confidence 45555543 6899999999998776677666 66889999999998632222 22346789999999998753322
Q ss_pred ccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccc
Q 003193 517 VCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRK 596 (840)
Q Consensus 517 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 596 (840)
.+ .....+++|+.|+++++. +....+. ....+++|+.|++++|.....++. ....++
T Consensus 420 ~p-------~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~--------------~~~~~~ 476 (968)
T PLN00113 420 LP-------SEFTKLPLVYFLDISNNN-LQGRINS-RKWDMPSLQMLSLARNKFFGGLPD--------------SFGSKR 476 (968)
T ss_pred CC-------hhHhcCCCCCEEECcCCc-ccCccCh-hhccCCCCcEEECcCceeeeecCc--------------cccccc
Confidence 22 124578999999999875 4443332 245789999999999976654442 114578
Q ss_pred cceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCC
Q 003193 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGK 676 (840)
Q Consensus 597 L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~ 676 (840)
|+.|+++++.-...++.. +..+++|+.|++++|.+....... ...++
T Consensus 477 L~~L~ls~n~l~~~~~~~-----------------------------~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~ 523 (968)
T PLN00113 477 LENLDLSRNQFSGAVPRK-----------------------------LGSLSELMQLKLSENKLSGEIPDE----LSSCK 523 (968)
T ss_pred ceEEECcCCccCCccChh-----------------------------hhhhhccCEEECcCCcceeeCChH----HcCcc
Confidence 999999988644443322 245788889999998766432222 24678
Q ss_pred CceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCC
Q 003193 677 NLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDS 756 (840)
Q Consensus 677 ~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~ 756 (840)
+|+.|+|++|.-...+| ..+..+++|++|++++|.-...+ |..+.. +++|+.|++++|+-...+|..+
T Consensus 524 ~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~------l~~L~~l~ls~N~l~~~~p~~~- 591 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIP--ASFSEMPVLSQLDLSQNQLSGEI---PKNLGN------VESLVQVNISHNHLHGSLPSTG- 591 (968)
T ss_pred CCCEEECCCCcccccCC--hhHhCcccCCEEECCCCcccccC---ChhHhc------CcccCEEeccCCcceeeCCCcc-
Confidence 89999997775433333 34778889999999987755555 665544 7889999999988666777543
Q ss_pred ccCCCcceEEeccCCCc
Q 003193 757 VEFPSLCQLQIACCPNL 773 (840)
Q Consensus 757 ~~l~sL~~L~i~~C~~L 773 (840)
.+.++....+.+.|.+
T Consensus 592 -~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 592 -AFLAINASAVAGNIDL 607 (968)
T ss_pred -hhcccChhhhcCCccc
Confidence 3444444455555544
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.3e-23 Score=256.85 Aligned_cols=345 Identities=20% Similarity=0.261 Sum_probs=264.6
Q ss_pred hccCCCcEEEeccCCc-------ccCCccc-CC-CcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhc
Q 003193 207 KIDEAPTAISIPFRGI-------YELPERL-GF-LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG 277 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~-------~~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~ 277 (840)
..+.+++.|.+..+.. ..+|..+ .+ .+||.|.+.++.. ..+|..+ ...+|+.|++.++.+..+|..+.
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF--RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC--CccCCcEEECcCccccccccccc
Confidence 4577888888865532 2345544 23 4699999988765 3677765 57899999999999999999999
Q ss_pred CCCCCCEEEccCCc-cCCcccccCCCCCCEEeecCC-CCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEE
Q 003193 278 CLINLRTLSLENCL-VVDVAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355 (840)
Q Consensus 278 ~l~~L~~L~L~~~~-~~~~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L 355 (840)
.+++|++|+++++. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|+.++.+|.. + ++++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 99999999999886 445667999999999999998 78899999999999999999999999999986 3 89999999
Q ss_pred EccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCC
Q 003193 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNS 435 (840)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~ 435 (840)
++++|......+ . ...+|+.|+++.+.+..+|..+.+++|+.|.+....... +.. ..
T Consensus 710 ~Lsgc~~L~~~p--------~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~------------l~~-~~ 766 (1153)
T PLN03210 710 NLSGCSRLKSFP--------D--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK------------LWE-RV 766 (1153)
T ss_pred eCCCCCCccccc--------c--ccCCcCeeecCCCccccccccccccccccccccccchhh------------ccc-cc
Confidence 999985432221 1 235789999999998888887777788777664211100 000 00
Q ss_pred ccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccc
Q 003193 436 TYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE 515 (840)
Q Consensus 436 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 515 (840)
...+......+++|+.|++++|.....+|..+ +++++|+.|++++|..++.++.. ..+++|+.|++++|..+.
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si---~~L~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI---QNLHKLEHLEIENCINLETLPTG----INLESLESLDLSGCSRLR 839 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhh---hCCCCCCEEECCCCCCcCeeCCC----CCccccCEEECCCCCccc
Confidence 11111122234689999999998888888877 78999999999999888877543 268899999999998887
Q ss_pred cccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCcccccccc
Q 003193 516 KVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFR 595 (840)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~ 595 (840)
.++. ..++|+.|++++. .++.+|. .+..+++|+.|++.+|++++.++. ....++
T Consensus 840 ~~p~----------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~-------------~~~~L~ 893 (1153)
T PLN03210 840 TFPD----------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL-------------NISKLK 893 (1153)
T ss_pred cccc----------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCc-------------cccccc
Confidence 6532 3468999999874 6777753 467899999999999999988764 334788
Q ss_pred ccceeecccCccccccc
Q 003193 596 KLHFLKLQHLPQLTSSG 612 (840)
Q Consensus 596 ~L~~L~l~~c~~L~~~~ 612 (840)
+|+.+.+.+|++|+.++
T Consensus 894 ~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 894 HLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCeeecCCCccccccc
Confidence 89999999999887654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-24 Score=222.80 Aligned_cols=394 Identities=19% Similarity=0.188 Sum_probs=251.7
Q ss_pred hhhccCCCcEEEeccCCcccCCcc----cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCC
Q 003193 205 LDKIDEAPTAISIPFRGIYELPER----LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI 280 (840)
Q Consensus 205 ~~~~~~~l~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~ 280 (840)
|....-..+-++.+.+.+..+... .-.+.-++|++++|.+. .+...+|.++++|+.+++..|.++.+|...+...
T Consensus 47 pa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG 125 (873)
T ss_pred CCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccccccc
Confidence 444455666777777776554322 12345567888877765 3444556788888888888888888887777777
Q ss_pred CCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEc
Q 003193 281 NLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (840)
Q Consensus 281 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l 357 (840)
||+.|+|.+|.|.. -+.+.-++.||.|||+.|.|+++|. .+..-.++++|+|++ +.++.+..+.|..+.+|-+|.+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeec
Confidence 78888888888777 4667778888888888888887763 345556788888887 6777777777778888888888
Q ss_pred cCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCcc
Q 003193 358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTY 437 (840)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~ 437 (840)
+.|.+.... ...+++|++|+.|++..|.+..+.. -.+..+++++.+++..+....
T Consensus 205 srNrittLp-------~r~Fk~L~~L~~LdLnrN~irive~------------------ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 205 SRNRITTLP-------QRSFKRLPKLESLDLNRNRIRIVEG------------------LTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred ccCcccccC-------HHHhhhcchhhhhhccccceeeehh------------------hhhcCchhhhhhhhhhcCccc
Confidence 877765322 2556777778888877766543221 113344455556666666666
Q ss_pred chhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccc
Q 003193 438 LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKV 517 (840)
Q Consensus 438 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 517 (840)
+.++++..+.++++|+|+.|.....-..++ -++..|+.|+++.+. ++.+.. ..-...++|+.|+++. +.+.++
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~l---fgLt~L~~L~lS~Na-I~rih~--d~WsftqkL~~LdLs~-N~i~~l 332 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWL---FGLTSLEQLDLSYNA-IQRIHI--DSWSFTQKLKELDLSS-NRITRL 332 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccc---cccchhhhhccchhh-hheeec--chhhhcccceeEeccc-cccccC
Confidence 666666667788888888776554444455 457888888888875 333321 1113456778888776 556666
Q ss_pred cccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCcccccccccc
Q 003193 518 CDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKL 597 (840)
Q Consensus 518 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 597 (840)
..+.+ ..+..|++|.++. +++.++. ...+..+.+|++|++++..---.+ ++....+..+|+|
T Consensus 333 ~~~sf------~~L~~Le~LnLs~-Nsi~~l~-e~af~~lssL~~LdLr~N~ls~~I----------EDaa~~f~gl~~L 394 (873)
T KOG4194|consen 333 DEGSF------RVLSQLEELNLSH-NSIDHLA-EGAFVGLSSLHKLDLRSNELSWCI----------EDAAVAFNGLPSL 394 (873)
T ss_pred ChhHH------HHHHHhhhhcccc-cchHHHH-hhHHHHhhhhhhhcCcCCeEEEEE----------ecchhhhccchhh
Confidence 54443 2567777777776 4555552 234566778888877764321111 1111244467777
Q ss_pred ceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCC
Q 003193 598 HFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKN 677 (840)
Q Consensus 598 ~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~ 677 (840)
++|.+.+. ++++++... +..+++|+.|++.+|.+.++-...+. .+ .
T Consensus 395 rkL~l~gN-qlk~I~krA----------------------------fsgl~~LE~LdL~~NaiaSIq~nAFe----~m-~ 440 (873)
T KOG4194|consen 395 RKLRLTGN-QLKSIPKRA----------------------------FSGLEALEHLDLGDNAIASIQPNAFE----PM-E 440 (873)
T ss_pred hheeecCc-eeeecchhh----------------------------hccCcccceecCCCCcceeecccccc----cc-h
Confidence 77777763 556555421 24567777777777777666555542 22 5
Q ss_pred ceEEEec
Q 003193 678 LTKLTVE 684 (840)
Q Consensus 678 L~~L~i~ 684 (840)
|++|.+.
T Consensus 441 Lk~Lv~n 447 (873)
T KOG4194|consen 441 LKELVMN 447 (873)
T ss_pred hhhhhhc
Confidence 6666553
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=7.9e-27 Score=229.99 Aligned_cols=477 Identities=19% Similarity=0.206 Sum_probs=261.5
Q ss_pred cEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~ 291 (840)
..+.++.|.+..+.... .+..+.++.+++|... .+|+++ +.+..+..|+.++|++..+|+.++.+..|+.|+.++|.
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 34455555554443333 4556666666666554 445544 55566666666666666666666666666666666666
Q ss_pred cCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCC
Q 003193 292 VVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQS 370 (840)
Q Consensus 292 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 370 (840)
+.. +++|+.+..|+.|+..+|+++.+|.+++++.+|..|++.+ ++++.+|++.+. ++.|++|+...|...
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L~------- 196 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLLE------- 196 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhhh-------
Confidence 655 6666666666666666666666666666666666666666 556666655333 666666665554332
Q ss_pred CCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCcc----CCCCCccccceEEEeeCCCccchhhHHHHH
Q 003193 371 NASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVW----SWSDGYETSKTLKLQLNNSTYLGYGMKMLL 446 (840)
Q Consensus 371 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l 446 (840)
....+++.+.+|..|++..|.+..+|+.-++..|..+++..+.+. +.....+.+..|++..+.....|..+.- +
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl-L 274 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL-L 274 (565)
T ss_pred -cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH-h
Confidence 222555556666666666666665554334455555544333211 1133556677788888888888877764 6
Q ss_pred hcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeec-cccccccccccc-----
Q 003193 447 KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFL-HNLINLEKVCDG----- 520 (840)
Q Consensus 447 ~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l-~~~~~L~~~~~~----- 520 (840)
.+|+.|+++++. +..+|..+ +++ .|+.|.+.+++ ++.+-.+....+.-.-|++|.= ..+..+..-..+
T Consensus 275 rsL~rLDlSNN~-is~Lp~sL---gnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 275 RSLERLDLSNND-ISSLPYSL---GNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred hhhhhhcccCCc-cccCCccc---ccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 788899998765 45667777 777 88999988887 2221111000011111222221 001111100000
Q ss_pred ccc-c-CCCCcccCCccEEEEecCCCcccccchhHHhhcc--cccEEEEecccccceeeccccccccccCCccccccccc
Q 003193 521 KVR-L-NEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLL--QLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRK 596 (840)
Q Consensus 521 ~~~-~-~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~--~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 596 (840)
..+ . ......+.+.+.|.+++ ..++.+|.. .++.-. -...++++. ..+.++|. .+..+..
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdE-Vfea~~~~~Vt~Vnfsk-NqL~elPk-------------~L~~lke 412 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSD-KQLTLVPDE-VFEAAKSEIVTSVNFSK-NQLCELPK-------------RLVELKE 412 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccc-cccccCCHH-HHHHhhhcceEEEeccc-chHhhhhh-------------hhHHHHH
Confidence 000 0 01123456677888876 467777543 322221 133444444 23444432 1222222
Q ss_pred cceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCC
Q 003193 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGK 676 (840)
Q Consensus 597 L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~ 676 (840)
+.+.-+.+...+..++. .+..+++|..|++++|-+.++|.+.. .+.
T Consensus 413 lvT~l~lsnn~isfv~~-----------------------------~l~~l~kLt~L~L~NN~Ln~LP~e~~-----~lv 458 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPL-----------------------------ELSQLQKLTFLDLSNNLLNDLPEEMG-----SLV 458 (565)
T ss_pred HHHHHHhhcCccccchH-----------------------------HHHhhhcceeeecccchhhhcchhhh-----hhh
Confidence 22222222222222111 12457888888888887777776543 456
Q ss_pred CceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCC
Q 003193 677 NLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDS 756 (840)
Q Consensus 677 ~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~ 756 (840)
.|+.|+|+.. +.+.+| .....+..|+.+-+++ .++.++. +.|+.. +.+|.+|++.+. .++.+|. .+
T Consensus 459 ~Lq~LnlS~N-rFr~lP--~~~y~lq~lEtllas~-nqi~~vd--~~~l~n------m~nL~tLDL~nN-dlq~IPp-~L 524 (565)
T KOG0472|consen 459 RLQTLNLSFN-RFRMLP--ECLYELQTLETLLASN-NQIGSVD--PSGLKN------MRNLTTLDLQNN-DLQQIPP-IL 524 (565)
T ss_pred hhheeccccc-ccccch--HHHhhHHHHHHHHhcc-ccccccC--hHHhhh------hhhcceeccCCC-chhhCCh-hh
Confidence 7888888554 666664 2244444555555554 5666663 334433 778888888665 5777775 34
Q ss_pred ccCCCcceEEeccCCC
Q 003193 757 VEFPSLCQLQIACCPN 772 (840)
Q Consensus 757 ~~l~sL~~L~i~~C~~ 772 (840)
.++++|++|.+++-|-
T Consensus 525 gnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 525 GNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccceeEEEecCCcc
Confidence 4788888888888763
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.8e-23 Score=212.52 Aligned_cols=338 Identities=17% Similarity=0.213 Sum_probs=227.1
Q ss_pred hccCCCcEEEeccCCcccCCcccC-CCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLG-FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRT 284 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~ 284 (840)
....+++.+++..|.+..+|.... ..+++.|++.+|.+. .+..+-+.-++.||+|||+.|.++++|. ++..=.++++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 345667777777777777776663 445777777777665 3334444667777777777777776653 3555567777
Q ss_pred EEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 285 LSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 285 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
|+|++|.|+. ...|..+.+|-+|.|+.|+++.+|.. +.+|++|+.|+|.. +.++.+..-.|..|.+|+.|.+..|.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcC
Confidence 7777777777 46677777777777777777777754 44577777777777 56666544446777777777777765
Q ss_pred ccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCc--ccccCcceEEEEEcCccC----CCCCccccceEEEeeCCC
Q 003193 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQD--LVFVELERFRICIGDVWS----WSDGYETSKTLKLQLNNS 435 (840)
Q Consensus 362 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~~~l~~L~l~~~~~ 435 (840)
+..-.+ +.+-.+.++++|++..|.+..+.+. .++..|+.|+++.+.+.. .....+.|+.|+|+.+..
T Consensus 257 I~kL~D-------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 257 ISKLDD-------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred cccccC-------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 543222 3444567777888887777766554 277777777777665432 234567788888888888
Q ss_pred ccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccc
Q 003193 436 TYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE 515 (840)
Q Consensus 436 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 515 (840)
..+++.-...+..|+.|.|+.|....-....| .++.+|++|+++++.---.+.+....+.++|+|++|.+.+ ++++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk 405 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLK 405 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHH---HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceee
Confidence 88888877778888888888876432222233 6688888888888875444444444446788888888888 6777
Q ss_pred cccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEe
Q 003193 516 KVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVT 566 (840)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~ 566 (840)
.++...+ ..+++|++|++.+. -+.++.+. .+..+ .|++|.+.
T Consensus 406 ~I~krAf------sgl~~LE~LdL~~N-aiaSIq~n-AFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 406 SIPKRAF------SGLEALEHLDLGDN-AIASIQPN-AFEPM-ELKELVMN 447 (873)
T ss_pred ecchhhh------ccCcccceecCCCC-cceeeccc-ccccc-hhhhhhhc
Confidence 7765443 36788888888774 35555332 23444 67777654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=1.6e-25 Score=220.91 Aligned_cols=455 Identities=19% Similarity=0.214 Sum_probs=311.5
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEe
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILS 308 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~ 308 (840)
.-..+..+.+++|..... .++. .++..|.+|++++|.+..+|++++.+..++.|+.++|.+.. |+.++.+.+|+.|+
T Consensus 43 ~qv~l~~lils~N~l~~l-~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVL-REDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred hhcchhhhhhccCchhhc-cHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 345577788888887643 3343 78999999999999999999999999999999999999999 99999999999999
Q ss_pred ecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEE
Q 003193 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (840)
Q Consensus 309 l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 388 (840)
.++|.+.++|++++.+..|..|+..+ +.+..+|++ ++.+.+|..|++.+|.... ...+.-+++.|++|+.
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~-~~~~~~l~~l~~~~n~l~~--------l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATN-NQISSLPED-MVNLSKLSKLDLEGNKLKA--------LPENHIAMKRLKHLDC 190 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccc-cccccCchH-HHHHHHHHHhhccccchhh--------CCHHHHHHHHHHhccc
Confidence 99999999999999999999999888 789999988 7899999999999887653 2244445788999999
Q ss_pred ecCCCCCCCCcc-cccCcceEEEEEcCcc--CCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccc
Q 003193 389 HIPDAQVMPQDL-VFVELERFRICIGDVW--SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVH 465 (840)
Q Consensus 389 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 465 (840)
..|....+|.++ .+.+|+.|++..+.+. ..+++++.+..+++..+....+|..+...++++..|++++++ ++.+|.
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pd 269 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPD 269 (565)
T ss_pred chhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCch
Confidence 999999999987 7888888888766643 257888999999999999888998888788999999999986 566787
Q ss_pred cccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCc
Q 003193 466 ELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRV 545 (840)
Q Consensus 466 ~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 545 (840)
++ ..+.+|.+|+++++. +..-+...+.+ .|+.|.+.+.| ++.+-...+.. ....-+..|+. .+ .|..+
T Consensus 270 e~---clLrsL~rLDlSNN~----is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~-gT~~vLKyLrs-~~-~~dgl 337 (565)
T KOG0472|consen 270 EI---CLLRSLERLDLSNND----ISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISK-GTQEVLKYLRS-KI-KDDGL 337 (565)
T ss_pred HH---HHhhhhhhhcccCCc----cccCCcccccc-eeeehhhcCCc-hHHHHHHHHcc-cHHHHHHHHHH-hh-ccCCC
Confidence 77 678999999999996 33334455677 88888888854 22221111100 00001111111 00 01000
Q ss_pred -------------ccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCccccccc
Q 003193 546 -------------KHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSG 612 (840)
Q Consensus 546 -------------~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~ 612 (840)
... +..-.....+.+.|++++ ..+..+|....... .-.-....++++. .+..+|
T Consensus 338 S~se~~~e~~~t~~~~-~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~----------~~~~Vt~VnfskN-qL~elP 404 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSE-SFPDIYAIITTKILDVSD-KQLTLVPDEVFEAA----------KSEIVTSVNFSKN-QLCELP 404 (565)
T ss_pred CCCcccccccCCCCCC-cccchhhhhhhhhhcccc-cccccCCHHHHHHh----------hhcceEEEecccc-hHhhhh
Confidence 011 112234567788888877 45555554321100 0001122233221 222332
Q ss_pred CCCCCCCccCCCCCcccccCCCCCcccccccccccCCcce-EecccccchhhcccCCccccccCCCceEEEecccCCcce
Q 003193 613 FDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKK-LKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKF 691 (840)
Q Consensus 613 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~-L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 691 (840)
.. +..+..+.+ +.++++.+..++. . ...+++|..|++++ +-+.+
T Consensus 405 k~-----------------------------L~~lkelvT~l~lsnn~isfv~~-~----l~~l~kLt~L~L~N-N~Ln~ 449 (565)
T KOG0472|consen 405 KR-----------------------------LVELKELVTDLVLSNNKISFVPL-E----LSQLQKLTFLDLSN-NLLND 449 (565)
T ss_pred hh-----------------------------hHHHHHHHHHHHhhcCccccchH-H----HHhhhcceeeeccc-chhhh
Confidence 22 223334433 4444444443322 2 24569999999954 56888
Q ss_pred eechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCCccCCCcceEEeccC
Q 003193 692 LFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACC 770 (840)
Q Consensus 692 l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C 770 (840)
+|.. +..+..|+.|+|+.. ....+ |+-.-. +..|+.+-. .-..+.+++..++.+...|..|++.+-
T Consensus 450 LP~e--~~~lv~Lq~LnlS~N-rFr~l---P~~~y~------lq~lEtlla-s~nqi~~vd~~~l~nm~nL~tLDL~nN 515 (565)
T KOG0472|consen 450 LPEE--MGSLVRLQTLNLSFN-RFRML---PECLYE------LQTLETLLA-SNNQIGSVDPSGLKNMRNLTTLDLQNN 515 (565)
T ss_pred cchh--hhhhhhhheeccccc-ccccc---hHHHhh------HHHHHHHHh-ccccccccChHHhhhhhhcceeccCCC
Confidence 8765 678888999999984 44444 543321 233444444 434688887766667778888887654
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-24 Score=235.67 Aligned_cols=81 Identities=15% Similarity=0.019 Sum_probs=43.5
Q ss_pred CccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccc
Q 003193 421 GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTF 500 (840)
Q Consensus 421 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 500 (840)
.+.+++.++++.+....+|.|+.. +.+|+.+....+.. ..++..+ ....+|+.|.+..|. +++++ ....++
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~-~~nle~l~~n~N~l-~~lp~ri---~~~~~L~~l~~~~ne-l~yip---~~le~~ 309 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGA-CANLEALNANHNRL-VALPLRI---SRITSLVSLSAAYNE-LEYIP---PFLEGL 309 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHh-cccceEecccchhH-HhhHHHH---hhhhhHHHHHhhhhh-hhhCC---Cccccc
Confidence 345566666666666666666655 46666666665544 3333333 335556666655553 33332 223445
Q ss_pred cccceeeccc
Q 003193 501 PLLESLFLHN 510 (840)
Q Consensus 501 ~~L~~L~l~~ 510 (840)
.+|++|++..
T Consensus 310 ~sL~tLdL~~ 319 (1081)
T KOG0618|consen 310 KSLRTLDLQS 319 (1081)
T ss_pred ceeeeeeehh
Confidence 5566666655
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=8.3e-24 Score=219.31 Aligned_cols=341 Identities=20% Similarity=0.236 Sum_probs=262.9
Q ss_pred hccCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC--CCChhhcCCCCCC
Q 003193 207 KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLINLR 283 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~l~~l~~L~ 283 (840)
..+..++.|.+....+..+|... .+.+|+.|.+.+|++. .+... +..++.||.+++..|++. .+|..|.++..|.
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHHHhhhccccccCCCCchhcccccce
Confidence 45677888888888888888776 6888999999888865 33333 377889999999999886 6899999999999
Q ss_pred EEEccCCccCC-cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 284 TLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 284 ~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
+|||++|++.+ |..+..-+++-+|+|++|+|..+|.. +-+|+.|-.|||++ +.+..+|+. +..|.+|++|.+++|.
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCCh
Confidence 99999999998 99999999999999999999999966 47899999999998 789999998 7999999999999886
Q ss_pred ccceecCCCCCCcccccCCCCCCeEEEecCCC--CCCCCcc-cccCcceEEEEEcCc---cCCCCCccccceEEEeeCCC
Q 003193 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDA--QVMPQDL-VFVELERFRICIGDV---WSWSDGYETSKTLKLQLNNS 435 (840)
Q Consensus 362 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~--~~~~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~l~~L~l~~~~~ 435 (840)
+.. ..+..+..++.|+.|.+++.+- ..+|..+ .+.+|..++++.+.. ++.+....+|+.|+|+++..
T Consensus 185 L~h-------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 185 LNH-------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hhH-------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 532 2345666777788888887653 3566665 778888888876664 34566778888888888888
Q ss_pred ccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccc
Q 003193 436 TYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE 515 (840)
Q Consensus 436 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 515 (840)
..+...... ..+|++|+++.+.. +.+|..+ ..++.|+.|.+.++.- . +.+.+...+.+.+|+.+...+ ++|+
T Consensus 258 teL~~~~~~-W~~lEtLNlSrNQL-t~LP~av---cKL~kL~kLy~n~NkL-~-FeGiPSGIGKL~~Levf~aan-N~LE 329 (1255)
T KOG0444|consen 258 TELNMTEGE-WENLETLNLSRNQL-TVLPDAV---CKLTKLTKLYANNNKL-T-FEGIPSGIGKLIQLEVFHAAN-NKLE 329 (1255)
T ss_pred eeeeccHHH-Hhhhhhhccccchh-ccchHHH---hhhHHHHHHHhccCcc-c-ccCCccchhhhhhhHHHHhhc-cccc
Confidence 777655554 46788888888754 4566666 6788888888877752 1 223344456777788888776 5666
Q ss_pred cccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeec
Q 003193 516 KVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVG 576 (840)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 576 (840)
-.|.+ ...++.|+.|.+. |+.|..+| ..+.-++.|+.|+++..+++..-|.
T Consensus 330 lVPEg-------lcRC~kL~kL~L~-~NrLiTLP--eaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 330 LVPEG-------LCRCVKLQKLKLD-HNRLITLP--EAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cCchh-------hhhhHHHHHhccc-ccceeech--hhhhhcCCcceeeccCCcCccCCCC
Confidence 65544 5568889999885 57777776 4467789999999999988876543
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.1e-23 Score=216.33 Aligned_cols=329 Identities=19% Similarity=0.269 Sum_probs=265.4
Q ss_pred cCccchhhhh--hccCCCcEEEeccCCcccCCccc-CCCcceeEeeccCcccc-CCCchhhcCCCCCcEEEcCCCCCCCC
Q 003193 197 NVADLKEELD--KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSL-QIPDPFFEGMTELRVLDLTGFRFHSL 272 (840)
Q Consensus 197 ~~~~~~~~~~--~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~l 272 (840)
+...+..+|. ....++.||++..|++..+.... .++.||.+.+..|++.. -+|.++| +++.|.+|||++|++++.
T Consensus 40 nrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~Ev 118 (1255)
T KOG0444|consen 40 NRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREV 118 (1255)
T ss_pred chhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhc
Confidence 3445566666 66889999999999997665544 79999999999988643 5888885 699999999999999999
Q ss_pred ChhhcCCCCCCEEEccCCccCC-cc-cccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCC
Q 003193 273 PSSLGCLINLRTLSLENCLVVD-VA-IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 273 p~~l~~l~~L~~L~L~~~~~~~-~~-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
|..+..-+++-+|+|++|+|.. |. -+-+|..|-+|||++|++..+|+.+..|.+|++|+|++ +.+..+.-..+..++
T Consensus 119 P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 119 PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMT 197 (1255)
T ss_pred chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccch
Confidence 9999999999999999999998 64 45699999999999999999999999999999999999 455444333355678
Q ss_pred CCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEEEEcCccCC---CCCccccc
Q 003193 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSW---SDGYETSK 426 (840)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~---~~~~~~l~ 426 (840)
+|++|.+++..-+. ......+..+.+|+.++++.|++..+|+-+ .+.+|++|+++.+.+... .+...+++
T Consensus 198 sL~vLhms~TqRTl------~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTL------DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLE 271 (1255)
T ss_pred hhhhhhcccccchh------hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhh
Confidence 89999998764321 123356777889999999999999999876 889999999987775542 34457899
Q ss_pred eEEEeeCCCccchhhHHHHHhcccceeeccccc-cccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccce
Q 003193 427 TLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG-FKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLES 505 (840)
Q Consensus 427 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 505 (840)
+|+++.+....+|..+.. +++|+.|.+.++.. .+.+|+.+ +.+.+|+.+...++. ++-+ +.....++.|+.
T Consensus 272 tLNlSrNQLt~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGI---GKL~~Levf~aanN~-LElV---PEglcRC~kL~k 343 (1255)
T KOG0444|consen 272 TLNLSRNQLTVLPDAVCK-LTKLTKLYANNNKLTFEGIPSGI---GKLIQLEVFHAANNK-LELV---PEGLCRCVKLQK 343 (1255)
T ss_pred hhccccchhccchHHHhh-hHHHHHHHhccCcccccCCccch---hhhhhhHHHHhhccc-cccC---chhhhhhHHHHH
Confidence 999999999999998876 78999999988763 45667766 789999999988875 4444 334567889999
Q ss_pred eecccccccccccccccccCCCCcccCCccEEEEecCCCccccc
Q 003193 506 LFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF 549 (840)
Q Consensus 506 L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 549 (840)
|.+.. +.|-.+|.+ ...++.|+.|++...|+|..-|
T Consensus 344 L~L~~-NrLiTLPea-------IHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 344 LKLDH-NRLITLPEA-------IHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hcccc-cceeechhh-------hhhcCCcceeeccCCcCccCCC
Confidence 99975 566666543 5678999999999999987543
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-23 Score=228.43 Aligned_cols=99 Identities=22% Similarity=0.290 Sum_probs=56.8
Q ss_pred CcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~ 290 (840)
+..|++++|.+..+|..+ .+.+|+.|.++.|.+. .+|.+. .++++|++|.|.+|.+..+|.++..+++|++|+++.|
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 555666666665555544 4556666666555543 344333 5556666666666666666666666666666666666
Q ss_pred ccCC-cccccCCCCCCEEeecCC
Q 003193 291 LVVD-VAIIGDLKKLEILSLKHS 312 (840)
Q Consensus 291 ~~~~-~~~i~~L~~L~~L~l~~~ 312 (840)
.+.. |..+..+..+..++.++|
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcc
Confidence 6555 555555555555555555
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.81 E-value=6.5e-21 Score=199.33 Aligned_cols=133 Identities=32% Similarity=0.521 Sum_probs=108.9
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCC--CCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCC-CHHHHHHHHHHhhcCCCC
Q 003193 7 SEDFLDWLLSNEEASHLFEKIVGHS--AKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSNSNPR 83 (840)
Q Consensus 7 ~~~~~l~~L~~~~s~~Lf~~~a~~~--~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~-~~~~W~~~l~~l~~~~~~ 83 (840)
..+|++++|+++||++||++.|+.. ..++.+++++++|+++|+|+||||+++|+.|+.+ +..+|+++++++.+...
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~- 227 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLR- 227 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 5689999999999999999999943 3566778999999999999999999999999754 78999999999887654
Q ss_pred Cccccccc-ccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhccccccc
Q 003193 84 KIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNA 141 (840)
Q Consensus 84 ~~~~~~~~-~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~ 141 (840)
+..+.... .+++.+||+.||++ +|+||+|||+||+++.|+++.++++|+|+|||+..
T Consensus 228 ~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 228 ESRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 22222333 89999999999997 99999999999999999999999999999999754
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-17 Score=144.63 Aligned_cols=151 Identities=23% Similarity=0.378 Sum_probs=101.0
Q ss_pred ccCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 208 IDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
..+.+++|.++.|.+..+|+.+ .+.+|++|++++|++. .+|.++ +.+++||.|++.-|++..+|..|+.++.|++||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 3556666777777776666655 5667777777666654 556555 666777777777666666677777777777777
Q ss_pred ccCCccCC---cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 287 LENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 287 L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
|++|++.+ |..|..++.|+.|+++.|.+.-+|..++++++||.|.+.. +.+-.+|.+ ++.++.|++|++.+|..
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhccccee
Confidence 77666655 6666666667777777776666777777777777777666 455566665 56666666666666654
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.3e-17 Score=144.47 Aligned_cols=167 Identities=24% Similarity=0.381 Sum_probs=148.8
Q ss_pred cccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccC
Q 003193 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGD 300 (840)
Q Consensus 222 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~ 300 (840)
+..++..+.+.++..|.++.|.++ .+|+.+ ..+++|++|++.+|+++++|.+++.++.||.|++.-|.+.. |..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 456677778999999999999987 466666 78999999999999999999999999999999999999888 999999
Q ss_pred CCCCCEEeecCCCCc--ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCccccc
Q 003193 301 LKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK 378 (840)
Q Consensus 301 L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 378 (840)
++-|+.||+.+|++. .+|..+..++.|+.|++++ +.+..+|+. ++++++||.|.+.+|... ....+++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------~lpkeig 170 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEIG 170 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------hCcHHHH
Confidence 999999999999877 7899999999999999999 788999998 899999999999988654 2447888
Q ss_pred CCCCCCeEEEecCCCCCCCCcc
Q 003193 379 QLSRLTTLEVHIPDAQVMPQDL 400 (840)
Q Consensus 379 ~l~~L~~L~l~~~~~~~~~~~~ 400 (840)
.+..|++|++.+|..+.+|..+
T Consensus 171 ~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHhcccceeeecChhh
Confidence 8999999999999998888754
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=3e-17 Score=162.71 Aligned_cols=141 Identities=23% Similarity=0.324 Sum_probs=101.6
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-Chh
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSS 275 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~ 275 (840)
.+..+.++|...+.....+.+..|.|. .+|+..|+.+++||.|||+.|.|+.+ |+.
T Consensus 54 r~~GL~eVP~~LP~~tveirLdqN~I~-----------------------~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A 110 (498)
T KOG4237|consen 54 RGKGLTEVPANLPPETVEIRLDQNQIS-----------------------SIPPGAFKTLHRLRRLDLSKNNISFIAPDA 110 (498)
T ss_pred cCCCcccCcccCCCcceEEEeccCCcc-----------------------cCChhhccchhhhceecccccchhhcChHh
Confidence 445555666555555666666555554 45666678888888888888888866 777
Q ss_pred hcCCCCCCEEEccC-CccCC-c-ccccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCC
Q 003193 276 LGCLINLRTLSLEN-CLVVD-V-AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (840)
Q Consensus 276 l~~l~~L~~L~L~~-~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~ 351 (840)
|.++..|-.|-+.+ |+|++ | ..|++|..|+.|.+.-|++.-++ ..+..|++|..|.+.+ +.+..++.+.+..+..
T Consensus 111 F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~ 189 (498)
T KOG4237|consen 111 FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAA 189 (498)
T ss_pred hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhc
Confidence 88888776666655 67777 3 56778888888888887777554 4568888888888888 6788888777788888
Q ss_pred CcEEEccCCc
Q 003193 352 LEELYMGNSF 361 (840)
Q Consensus 352 L~~L~l~~~~ 361 (840)
++++.+..|.
T Consensus 190 i~tlhlA~np 199 (498)
T KOG4237|consen 190 IKTLHLAQNP 199 (498)
T ss_pred cchHhhhcCc
Confidence 8888776654
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=9e-14 Score=157.82 Aligned_cols=244 Identities=18% Similarity=0.087 Sum_probs=124.9
Q ss_pred cchhhhhhccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCC
Q 003193 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (840)
Q Consensus 200 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l 279 (840)
.+..+|.....+++.|++..|++..+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.++.+|...
T Consensus 212 ~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp--- 281 (788)
T PRK15387 212 GLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP--- 281 (788)
T ss_pred CCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---
Confidence 34445554455667777777766666643 456677777666654 3442 2346666677776666665422
Q ss_pred CCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
.+|+.|++++|.++. |. .+++|++|++++|+++.+|... .+|+.|++++ +.+..+|. + ..+|++|+++
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~--l--p~~Lq~LdLS 350 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQLTSLPT--L--PSGLQELSVS 350 (788)
T ss_pred hhcCEEECcCCccccccc---cccccceeECCCCccccCCCCc---cccccccccc-Cccccccc--c--ccccceEecC
Confidence 456666666666665 32 2355667777776666665422 3455566666 45555553 1 1456666666
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccc
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL 438 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 438 (840)
+|.+.. ++ .+ ..+|+.|+++.|.+..+|.. ..+|+.|++..+.+.........++.|+++++....+
T Consensus 351 ~N~Ls~-LP--------~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 351 DNQLAS-LP--------TL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL 417 (788)
T ss_pred CCccCC-CC--------CC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCC
Confidence 665432 11 01 13455566666665555432 2345555554433222212223444444444444444
Q ss_pred hhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
|.. +.+|+.|++++|.. +.+|..+ ..+++|+.|++++|+
T Consensus 418 P~l----~~~L~~L~Ls~NqL-t~LP~sl---~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 418 PML----PSGLLSLSVYRNQL-TRLPESL---IHLSSETTVNLEGNP 456 (788)
T ss_pred Ccc----hhhhhhhhhccCcc-cccChHH---hhccCCCeEECCCCC
Confidence 321 12344444444432 2333333 344445555554443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=1.3e-13 Score=156.67 Aligned_cols=255 Identities=20% Similarity=0.166 Sum_probs=174.9
Q ss_pred CCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccC
Q 003193 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~ 289 (840)
..-..|+++.+.+..+|..+. ++|+.|.+.+|++. .+|. .+++|++|++++|.++.+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 345678999999998988663 48999999998876 4664 367899999999999999853 46899999999
Q ss_pred CccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecC
Q 003193 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
|.+.. |.. ..+|+.|++++|+++.+|.. +++|+.|++++ +.+..+|.. ..+|+.|++++|.+.. ++
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~~-LP- 338 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTS-LP- 338 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCcccc-cc-
Confidence 99887 442 35788999999999999863 57899999999 678888752 2467788888886542 11
Q ss_pred CCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhc
Q 003193 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKR 448 (840)
Q Consensus 369 ~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~ 448 (840)
.+ ..+|+.|++++|.+..+|.. ..+|+.|.+ +.+....+|.. .++
T Consensus 339 -------~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~L--------------------s~N~L~~LP~l----~~~ 383 (788)
T PRK15387 339 -------TL--PSGLQELSVSDNQLASLPTL--PSELYKLWA--------------------YNNRLTSLPAL----PSG 383 (788)
T ss_pred -------cc--ccccceEecCCCccCCCCCC--Ccccceehh--------------------hccccccCccc----ccc
Confidence 11 14789999999988877653 234444443 33333333321 246
Q ss_pred ccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCC
Q 003193 449 TEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD 528 (840)
Q Consensus 449 L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~ 528 (840)
|+.|++++|... .+|. ..++|+.|++++|. +..++. .+.+|+.|++++ ++++.++.. .
T Consensus 384 L~~LdLs~N~Lt-~LP~------l~s~L~~LdLS~N~-LssIP~------l~~~L~~L~Ls~-NqLt~LP~s-------l 441 (788)
T PRK15387 384 LKELIVSGNRLT-SLPV------LPSELKELMVSGNR-LTSLPM------LPSGLLSLSVYR-NQLTRLPES-------L 441 (788)
T ss_pred cceEEecCCccc-CCCC------cccCCCEEEccCCc-CCCCCc------chhhhhhhhhcc-CcccccChH-------H
Confidence 777777776432 3332 23567888888775 333221 234677777776 455555432 3
Q ss_pred cccCCccEEEEecCC
Q 003193 529 KSFSNLRIIKVEGCH 543 (840)
Q Consensus 529 ~~~~~L~~L~l~~c~ 543 (840)
..+++|+.|++++++
T Consensus 442 ~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 442 IHLSSETTVNLEGNP 456 (788)
T ss_pred hhccCCCeEECCCCC
Confidence 467888888888764
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=2.7e-13 Score=155.18 Aligned_cols=243 Identities=16% Similarity=0.212 Sum_probs=110.4
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCcc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLV 292 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 292 (840)
..|.++++.+..+|..+ .++++.|++++|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|++++|.+
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 44445444444444332 134555555555443 3444332 245555555555555554332 2455555555554
Q ss_pred CC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCC
Q 003193 293 VD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN 371 (840)
Q Consensus 293 ~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 371 (840)
.. |..+. .+|++|++++|+++.+|..+. .+|++|++++ +.+..+|.. +. ++|+.|++++|.+.. .+
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~-LP---- 320 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLTA-LP---- 320 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCcccc-CC----
Confidence 44 33332 245555555555555554332 3455555555 344444432 11 244455555443321 00
Q ss_pred CCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCC-CCccccceEEEeeCCCccchhhHHHHHhccc
Q 003193 372 ASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWS-DGYETSKTLKLQLNNSTYLGYGMKMLLKRTE 450 (840)
Q Consensus 372 ~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~ 450 (840)
..+ .++|+.|+++.|.+..+|..+. ++|+.|++..+...... ...+.|+.|+++++....+|..+. ..|+
T Consensus 321 ---~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~---~sL~ 391 (754)
T PRK15370 321 ---ETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP---AALQ 391 (754)
T ss_pred ---ccc--cccceeccccCCccccCChhhc-CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhHH---HHHH
Confidence 000 1244455555544444443221 33444444333211100 012356666666666666665543 3567
Q ss_pred ceeeccccccccccccccch-hhcccccEEEeecCC
Q 003193 451 DLHLDELAGFKNVVHELDDE-EGFARLRHLHVHNGP 485 (840)
Q Consensus 451 ~L~L~~~~~~~~~~~~l~~~-~~l~~L~~L~l~~~~ 485 (840)
.|++++|.. ..+|..+... ..++++..|.+.+++
T Consensus 392 ~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 392 IMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 777777653 3444433110 234666777777765
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=3.6e-13 Score=154.12 Aligned_cols=245 Identities=18% Similarity=0.212 Sum_probs=184.3
Q ss_pred cchhhhhhccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCC
Q 003193 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (840)
Q Consensus 200 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l 279 (840)
.+..+|...++.++.|++++|.+..+|... .++|++|++++|.+. .+|..+. .+|+.|++++|.+..+|..+.
T Consensus 189 ~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP~~l~-- 261 (754)
T PRK15370 189 GLTTIPACIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELPERLP-- 261 (754)
T ss_pred CcCcCCcccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCChhHh--
Confidence 455566666788999999999999888765 368999999998876 6776552 479999999999999998775
Q ss_pred CCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
.+|++|++++|.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++ +.+..+|.. + .++|+.|+++
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~Ls 333 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLEAG 333 (754)
T ss_pred CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceecccc
Confidence 589999999999888 66554 589999999999999987654 4789999998 677788764 2 3689999999
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCC-CccccceEEEeeCCCcc
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSD-GYETSKTLKLQLNNSTY 437 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~l~~~~~~~ 437 (840)
+|.+.. ++ ..+ .++|+.|++++|.+..+|..+ .++|+.|++..+....... ....++.|+++.+....
T Consensus 334 ~N~Lt~-LP-------~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 334 ENALTS-LP-------ASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVR 402 (754)
T ss_pred CCcccc-CC-------hhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCccc
Confidence 887642 22 122 257999999999888777654 3688899887766443221 12368888999988888
Q ss_pred chhhHHHH---HhcccceeeccccccccccccccchhhcccccEE
Q 003193 438 LGYGMKML---LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHL 479 (840)
Q Consensus 438 ~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L 479 (840)
+|..+... .+++..|++.+|.... ..+++|+.|
T Consensus 403 LP~sl~~~~~~~~~l~~L~L~~Npls~---------~tl~~L~~L 438 (754)
T PRK15370 403 LPESLPHFRGEGPQPTRIIVEYNPFSE---------RTIQNMQRL 438 (754)
T ss_pred CchhHHHHhhcCCCccEEEeeCCCccH---------HHHHHHHHh
Confidence 88776654 3567888888876431 445556555
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.36 E-value=9.1e-13 Score=153.22 Aligned_cols=126 Identities=22% Similarity=0.308 Sum_probs=97.5
Q ss_pred ccCCCcEEEeccCC--cccCCcc--cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCC
Q 003193 208 IDEAPTAISIPFRG--IYELPER--LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283 (840)
Q Consensus 208 ~~~~l~~L~l~~~~--~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~ 283 (840)
...+++.|-+..|. +..++.. ..++.||+|++++|...+.+|..+ +++-+||+|+++++.++.+|.++++|+.|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 34478999999886 5556553 379999999999998888999887 899999999999999999999999999999
Q ss_pred EEEccCCccCC--cccccCCCCCCEEeecCCCCccc---ChhhcCCCCCCEEEccC
Q 003193 284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQL---PREIGQLTCLKLLDLSN 334 (840)
Q Consensus 284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~L~~ 334 (840)
+|++..+.... +.....|++||+|.+.......- -..+.+|.+|+.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 99999887544 45556699999999977642211 12334455555554433
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.06 E-value=1.2e-12 Score=131.52 Aligned_cols=142 Identities=18% Similarity=0.248 Sum_probs=82.1
Q ss_pred cccCCcceEecccc-cchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCc
Q 003193 645 VVFPSLKKLKLSSI-NVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRV 723 (840)
Q Consensus 645 ~~l~~L~~L~l~~c-~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~ 723 (840)
++.++|+.|.+..| .+++..-.. ...+++.|+.|++.+|-..++-...+...+++.|+.|.++.|..+++-
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~---l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~----- 388 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTM---LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE----- 388 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhh---hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-----
Confidence 44567777777777 444432222 235667777777777766655423344567777888888877766532
Q ss_pred cccc-CccccccccccccccccCCcceeecCCCCccCCCcceEEeccCCCcceeecccccccccccccccccCcccc
Q 003193 724 GRDD-NMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLF 799 (840)
Q Consensus 724 ~~~~-~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~i~~~~~~~l~ 799 (840)
|... .........|..+.+.+||.++.--...+..+++|+.+++.+|....+-+.. .-..|+|.+.+-.+|
T Consensus 389 gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~-----~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 389 GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS-----RFATHLPNIKVHAYF 460 (483)
T ss_pred hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH-----HHHhhCccceehhhc
Confidence 2211 0011225677788888888766543333446778888888888776554321 122466655444443
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=4.8e-12 Score=127.41 Aligned_cols=273 Identities=20% Similarity=0.219 Sum_probs=160.0
Q ss_pred cccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCC
Q 003193 448 RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNED 527 (840)
Q Consensus 448 ~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 527 (840)
.|+.|.++++.....-+..... ..+|++++|.+.+|..++...- .......++|+.|.+..|+.++...-...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~-~~CpnIehL~l~gc~~iTd~s~-~sla~~C~~l~~l~L~~c~~iT~~~Lk~l----- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFA-SNCPNIEHLALYGCKKITDSSL-LSLARYCRKLRHLNLHSCSSITDVSLKYL----- 211 (483)
T ss_pred ccccccccccccCCcchhhHHh-hhCCchhhhhhhcceeccHHHH-HHHHHhcchhhhhhhcccchhHHHHHHHH-----
Confidence 4666777776655433221111 4566666666666653322100 00113455666666666666554432111
Q ss_pred CcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcc
Q 003193 528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ 607 (840)
Q Consensus 528 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 607 (840)
...+++|++|+++.|+.++.-.-....++...++++...+|..++.-.... .-...+-+.++++..|..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~-----------~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK-----------AAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH-----------HhccChHhhccchhhhcc
Confidence 234666666666666665552211223445555555555555443221100 011344455555556655
Q ss_pred cccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccc-cchhhcccCCccccccCCCceEEEeccc
Q 003193 608 LTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSI-NVEKIWLNSFSAIESWGKNLTKLTVEKC 686 (840)
Q Consensus 608 L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~l~~~~~~~~~~~~~~l~~L~~L~i~~C 686 (840)
+++.. ++..-..+..|+.|+.++| .+++.+...+. ....+|+.|.+.+|
T Consensus 281 lTD~~---------------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg---~~~~~L~~l~l~~c 330 (483)
T KOG4341|consen 281 LTDED---------------------------LWLIACGCHALQVLCYSSCTDITDEVLWALG---QHCHNLQVLELSGC 330 (483)
T ss_pred ccchH---------------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHh---cCCCceEEEecccc
Confidence 54421 1222234778999999999 77776665553 46699999999999
Q ss_pred CCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCC----CccCCCc
Q 003193 687 GRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGD----SVEFPSL 762 (840)
Q Consensus 687 ~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~----~~~l~sL 762 (840)
.++++.--.....+.+.|+.+++.+|....+-. +. ....++|.|+.|.+++|...++-.... ......|
T Consensus 331 ~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-----L~--sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 331 QQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-----LA--SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred chhhhhhhhhhhcCChhhhhhcccccceehhhh-----Hh--hhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 998887554556788999999999998765431 11 112348999999999999887762211 1245678
Q ss_pred ceEEeccCCCcce
Q 003193 763 CQLQIACCPNLKI 775 (840)
Q Consensus 763 ~~L~i~~C~~L~~ 775 (840)
+.+.+.+||.+..
T Consensus 404 ~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 404 EVLELDNCPLITD 416 (483)
T ss_pred ceeeecCCCCchH
Confidence 9999999988744
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.5e-11 Score=128.31 Aligned_cols=178 Identities=22% Similarity=0.364 Sum_probs=146.9
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
.......+++.|.+..+|... .+..|..+.+..|.+. .+|..+ .++..|.+||++.|+++.+|..++.|+ |++|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 344566788888888888766 5777888888877765 566665 788999999999999999999888775 899999
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
++|+++. |..|+.+..|..||.+.|.+..+|..++.+.+|+.|++.. +.+..+|++ +.. -.|..|+++.|.+..
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~-LpLi~lDfScNkis~-- 225 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCS-LPLIRLDFSCNKISY-- 225 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhC-CceeeeecccCceee--
Confidence 9999988 8899999999999999999999999999999999999988 778888887 564 468889999887652
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL 400 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 400 (840)
....+.+|++|+.|-+.+|.+..-|..+
T Consensus 226 ------iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 226 ------LPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ------cchhhhhhhhheeeeeccCCCCCChHHH
Confidence 3367888899999999999888777665
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.98 E-value=1.1e-11 Score=123.65 Aligned_cols=258 Identities=17% Similarity=0.205 Sum_probs=158.4
Q ss_pred cchhhhh---hccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-C
Q 003193 200 DLKEELD---KIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P 273 (840)
Q Consensus 200 ~~~~~~~---~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p 273 (840)
.+..+|. +..+++|+|+++.|+|+.+.+. + +++++.+|.+.+++....+|.+.|.++..|+.|.+.-|.+..+ .
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~ 157 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQ 157 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhH
Confidence 3444555 5678899999999999887554 3 7888888888886666689999999999999999999988865 5
Q ss_pred hhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCc---c----------cChhhcCCCCCCEEEccCCCCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIE---Q----------LPREIGQLTCLKLLDLSNCSKL 338 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~---~----------lp~~i~~L~~L~~L~L~~~~~l 338 (840)
+.+..+++|+.|.+.+|.+.. + ..+..+..++++.+..|.+. . .|..++.....+-..+.+ ..+
T Consensus 158 ~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~Ri 236 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY-KRI 236 (498)
T ss_pred HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH-HHh
Confidence 678889999999999988877 3 47888888888888776421 1 122222222222222222 222
Q ss_pred CccCccccc-CCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccC
Q 003193 339 KEIRPNVIS-NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS 417 (840)
Q Consensus 339 ~~~p~~~l~-~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 417 (840)
..++...+. .+..+..=..+.++.. ...-..-++.|++|++|++++|.++.+.+.
T Consensus 237 ~q~~a~kf~c~~esl~s~~~~~d~~d------~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~------------------ 292 (498)
T KOG4237|consen 237 NQEDARKFLCSLESLPSRLSSEDFPD------SICPAKCFKKLPNLRKLNLSNNKITRIEDG------------------ 292 (498)
T ss_pred cccchhhhhhhHHhHHHhhccccCcC------CcChHHHHhhcccceEeccCCCccchhhhh------------------
Confidence 223222111 0111111011111110 011123367788888888888777655433
Q ss_pred CCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 418 WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 418 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
|+.....++.|.|..+....+...++..+..|+.|+|.++......+..| +.+..|.+|.+-.++
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF---~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF---QTLFSLSTLNLLSNP 357 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc---cccceeeeeehccCc
Confidence 23344445555555566666666666666777777777776655555555 456666666666554
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.97 E-value=1.7e-10 Score=122.85 Aligned_cols=158 Identities=19% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCCcceeEeeccCccccC----CCchhhcCCCCCcEEEcCCCCCCC-------CChhhcCCCCCCEEEccCCccCC--cc
Q 003193 230 GFLKLKLFLFFTENLSLQ----IPDPFFEGMTELRVLDLTGFRFHS-------LPSSLGCLINLRTLSLENCLVVD--VA 296 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~Lr~L~l~~~~~~~-------lp~~l~~l~~L~~L~L~~~~~~~--~~ 296 (840)
.+.+|+.+.+.++.+... ++. .+...+.++.|+++++.+.. ++..+..+++|++|++++|.+.. +.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 345577777776665321 222 23455667777777766542 23455566677777777776653 33
Q ss_pred cccCCCC---CCEEeecCCCCc-----ccChhhcCC-CCCCEEEccCCCCCC-----ccCcccccCCCCCcEEEccCCcc
Q 003193 297 IIGDLKK---LEILSLKHSSIE-----QLPREIGQL-TCLKLLDLSNCSKLK-----EIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 297 ~i~~L~~---L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~L~~~~~l~-----~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
.+..+.+ |++|++++|++. .+...+..+ ++|+.|++++|. +. .++.. +..+++|++|++++|.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 3333333 777777777665 223344555 677777777743 32 12222 45556677777766654
Q ss_pred cceecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 363 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
.... .......+..+++|+.|+++++.+
T Consensus 178 ~~~~---~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 178 GDAG---IRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred chHH---HHHHHHHHHhCCCCCEEeccCCcc
Confidence 3210 001112334445666666665544
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=4.1e-11 Score=125.18 Aligned_cols=149 Identities=24% Similarity=0.365 Sum_probs=100.6
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
...+..+.+..|.+..+|..+ .+..|..++++.|.+. .+|..+ ..+ -|++|-+++|+++.+|+.++.+.+|..||.
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l-C~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGL-CDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhh-hcC-cceeEEEecCccccCCcccccchhHHHhhh
Confidence 334455556666666666555 5666777777777665 455544 222 467777777777777777777777777777
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
+.|.+.. |..++.+..|+.|+++.|++..+|..++.| .|..||++. |++..+|.. |.+|+.||+|-+.+|.+.
T Consensus 174 s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc-Cceeecchh-hhhhhhheeeeeccCCCC
Confidence 7777666 777777777777777777777777777743 467777765 677777766 677777777777776553
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=9.8e-10 Score=102.29 Aligned_cols=118 Identities=25% Similarity=0.348 Sum_probs=32.1
Q ss_pred CCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhc-CCCCCCEEEcc
Q 003193 211 APTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG-CLINLRTLSLE 288 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~-~l~~L~~L~L~ 288 (840)
+.+.|++.+|.+..+.... .+.+|+.|++++|.+.. +.. +..+++|++|++++|.++++++.+. .+++|+.|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-LEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCcc-ccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 4566666666665554332 34555566665555442 221 2445555666666665555544332 45556666665
Q ss_pred CCccCC---cccccCCCCCCEEeecCCCCcccCh----hhcCCCCCCEEE
Q 003193 289 NCLVVD---VAIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLD 331 (840)
Q Consensus 289 ~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~ 331 (840)
+|.+.+ ...++.+++|++|++.+|.++.-+. -+..+++|+.||
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 555544 2344455555555555555543331 234444444444
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=6e-10 Score=103.68 Aligned_cols=106 Identities=26% Similarity=0.405 Sum_probs=33.0
Q ss_pred CCCCCcEEEcCCCCCCCCChhhc-CCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhh-cCCCCCCEEEc
Q 003193 255 GMTELRVLDLTGFRFHSLPSSLG-CLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDL 332 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~L 332 (840)
+..++|.|+|.+|.++.+. .++ .+.+|+.|++++|.++..+.+..+++|++|++++|+|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445677777777776653 344 46677777777777777666777777777777777777776555 35677777777
Q ss_pred cCCCCCCccCc-ccccCCCCCcEEEccCCcc
Q 003193 333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 333 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~ 362 (840)
++ +.+..+.. ..++.+++|++|++.+|.+
T Consensus 96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SN-NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TT-S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cC-CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 76 45544322 2255667777777776654
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=3.5e-10 Score=120.55 Aligned_cols=180 Identities=21% Similarity=0.146 Sum_probs=115.4
Q ss_pred cCCCcEEEeccCCcc-----cCCccc-CCCcceeEeeccCcccc------CCCchhhcCCCCCcEEEcCCCCCC-CCChh
Q 003193 209 DEAPTAISIPFRGIY-----ELPERL-GFLKLKLFLFFTENLSL------QIPDPFFEGMTELRVLDLTGFRFH-SLPSS 275 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~------~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~ 275 (840)
...++.+.+.++.+. .++... ..+.++.+.+.++.... .++ ..+..+++|+.|++++|.+. ..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHH
Confidence 344777777777762 233322 45668888887765541 111 23466788888888888876 34455
Q ss_pred hcCCCC---CCEEEccCCccCC------cccccCC-CCCCEEeecCCCCc-----ccChhhcCCCCCCEEEccCCCCCCc
Q 003193 276 LGCLIN---LRTLSLENCLVVD------VAIIGDL-KKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKE 340 (840)
Q Consensus 276 l~~l~~---L~~L~L~~~~~~~------~~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~ 340 (840)
+..+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.++ .++..+..+++|++|++++| .+..
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~ 179 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGD 179 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCch
Confidence 555554 8888888888763 2345566 88888888888777 44556677788888888885 3431
Q ss_pred -----cCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 341 -----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 341 -----~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
++.. +..+++|++|++++|.+..... ......+..+++|+.|++++|.+.
T Consensus 180 ~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~---~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 180 AGIRALAEG-LKANCNLEVLDLNNNGLTDEGA---SALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHH-HHhCCCCCEEeccCCccChHHH---HHHHHHhcccCCCCEEecCCCcCc
Confidence 2222 4556788888888886532110 111234556778888888877654
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=1.7e-10 Score=110.91 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=115.3
Q ss_pred CCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccC
Q 003193 255 GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~ 334 (840)
..+.|..+|+++|.++.+-++..-++.+|+|++++|.+....++..|.+|+.||+++|.++++-.+-.+|.|.++|.+.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45679999999999999989999999999999999999998889999999999999999998887778899999999999
Q ss_pred CCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCC
Q 003193 335 CSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 335 ~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
+.+..+.. +++|-+|..|++++|++... .....+++++.|+.+.+.+|.+..+++
T Consensus 362 -N~iE~LSG--L~KLYSLvnLDl~~N~Ie~l------deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 -NKIETLSG--LRKLYSLVNLDLSSNQIEEL------DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hhHhhhhh--hHhhhhheeccccccchhhH------HHhcccccccHHHHHhhcCCCccccch
Confidence 78887754 89999999999999976531 233567788888888888887766554
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=1.3e-08 Score=111.71 Aligned_cols=169 Identities=28% Similarity=0.371 Sum_probs=77.2
Q ss_pred CCcceeEeeccCccccCCCchhhcCCC-CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEe
Q 003193 231 FLKLKLFLFFTENLSLQIPDPFFEGMT-ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILS 308 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~ 308 (840)
.+.+..|.+.+|.+. .++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++|++.+ +...+.+.+|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 344455555444443 232222 2232 4555555555555554445555555555555555555 33333555555555
Q ss_pred ecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEE
Q 003193 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (840)
Q Consensus 309 l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 388 (840)
+++|+++.+|..++.+.+|++|.+++ +.....+.. +.++.++..+.+.++.... .+..++.+.+++.|++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~-N~~~~~~~~-~~~~~~l~~l~l~~n~~~~--------~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSN-NSIIELLSS-LSNLKNLSGLELSNNKLED--------LPESIGNLSNLETLDL 262 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcC-Ccceecchh-hhhcccccccccCCceeee--------ccchhccccccceecc
Confidence 55555555555444444455555554 212222222 4445555555444443211 0133334444555555
Q ss_pred ecCCCCCCCCcccccCcceEEEE
Q 003193 389 HIPDAQVMPQDLVFVELERFRIC 411 (840)
Q Consensus 389 ~~~~~~~~~~~~~~~~L~~L~l~ 411 (840)
+.|.+..++......+++.+.+.
T Consensus 263 s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 263 SNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred ccccccccccccccCccCEEecc
Confidence 55555444443344444444443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=1.6e-09 Score=104.39 Aligned_cols=128 Identities=27% Similarity=0.334 Sum_probs=81.7
Q ss_pred CCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEee
Q 003193 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSL 309 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l 309 (840)
+..|.++++++|.+. .+..++ .-.+.+|+|++++|.+..+-. +..|++|+.|||++|.++. ...-.+|-|.++|.+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 556666777766654 333333 455677777777777766543 6667777777777777666 344446667777777
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCc-ccccCCCCCcEEEccCCccc
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~ 363 (840)
++|.|..+. ++++|.+|..||+++ +.+..+.. ..||+|+.|+++.+.+|.+.
T Consensus 360 a~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 777666663 567777777777777 45554432 22677777777777776554
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=1.5e-08 Score=111.08 Aligned_cols=172 Identities=30% Similarity=0.423 Sum_probs=89.4
Q ss_pred CCCcEEEeccCCcccCCcccCCC--cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 210 EAPTAISIPFRGIYELPERLGFL--KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
..++.+++..+.+..++...... +|+.|++.+|.+. .+|.. ...++.|+.|++++|++..+|...+.+..|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34555555555555555544332 5556665555543 22222 24555556666666655555555555555666666
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
++|.+.. |..++.+.+|++|.+++|.+...+..+.++.++..+.+.+ +.+..++.. ++.+.+++.|++++|.+.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceecccccccc---
Confidence 6655555 4444455555566655555455555555555555555444 344443332 455555555555555432
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
.+..+..+.+|+.|+++++...
T Consensus 269 ------~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 269 ------SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ------ccccccccCccCEEeccCcccc
Confidence 1122445555555555555443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.6e-09 Score=105.32 Aligned_cols=189 Identities=19% Similarity=0.126 Sum_probs=126.7
Q ss_pred hccCCCcEEEeccCCcccCCc--cc-CCCcceeEeeccCcccc-CCCchhhcCCCCCcEEEcCCCCCCCCChh--hcCCC
Q 003193 207 KIDEAPTAISIPFRGIYELPE--RL-GFLKLKLFLFFTENLSL-QIPDPFFEGMTELRVLDLTGFRFHSLPSS--LGCLI 280 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--l~~l~ 280 (840)
...+++|.+++.++.+...+. .. .+++++.|+++.|-+.. ..--.+...+++|+.|+++.|.+...-++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567889999999888876663 22 69999999998876532 12234567899999999999987643222 23678
Q ss_pred CCCEEEccCCccCC---cccccCCCCCCEEeecCC-CCcccChhhcCCCCCCEEEccCCCCCCccC-cccccCCCCCcEE
Q 003193 281 NLRTLSLENCLVVD---VAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIR-PNVISNLTRLEEL 355 (840)
Q Consensus 281 ~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L 355 (840)
+|+.|.++.|.++. ......+++|+.|++.+| .+..-......+..|+.|||++++ +...+ ...++.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhh
Confidence 89999999998876 244556788999999888 333222334556788999999844 44444 1226788888888
Q ss_pred EccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCC
Q 003193 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (840)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 397 (840)
+++.|.+.. +.............+.+|+.|++..|.+...+
T Consensus 277 nls~tgi~s-i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 277 NLSSTGIAS-IAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hccccCcch-hcCCCccchhhhcccccceeeecccCcccccc
Confidence 888776532 11122222333455677788888777765444
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=3.8e-07 Score=104.76 Aligned_cols=104 Identities=21% Similarity=0.365 Sum_probs=85.7
Q ss_pred CCcEEEcCCCCCC-CCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCCCCCEEEcc
Q 003193 258 ELRVLDLTGFRFH-SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLS 333 (840)
Q Consensus 258 ~Lr~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~L~ 333 (840)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+.. |..++.+++|++|++++|+++ .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788899999887 678889999999999999998875 778999999999999999887 788889999999999999
Q ss_pred CCCCCCccCcccccC-CCCCcEEEccCCcc
Q 003193 334 NCSKLKEIRPNVISN-LTRLEELYMGNSFT 362 (840)
Q Consensus 334 ~~~~l~~~p~~~l~~-L~~L~~L~l~~~~~ 362 (840)
+|.....+|.. ++. ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 86655677766 454 35677888877743
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=4e-08 Score=100.20 Aligned_cols=181 Identities=19% Similarity=0.161 Sum_probs=132.7
Q ss_pred hccCCCcEEEeccCCcccCCcc---c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC--CCChhhcCCC
Q 003193 207 KIDEAPTAISIPFRGIYELPER---L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLI 280 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~---~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~l~~l~ 280 (840)
....++|.|+++.|-+...... . .+|+|+.|+++.|.+........-..+++|+.|.+++|.++ .+-..+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 5678999999999877544322 2 69999999999998754443333346889999999999987 3444566789
Q ss_pred CCCEEEccCCc-cCC-cccccCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEccCCCCCCccC--cc----cccCCC
Q 003193 281 NLRTLSLENCL-VVD-VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIR--PN----VISNLT 350 (840)
Q Consensus 281 ~L~~L~L~~~~-~~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~p--~~----~l~~L~ 350 (840)
+|..|+|.+|. +.. -.....++.|+.|||++|++...+ ..++.++.|+.|+++. +.+.++. +. ....++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc-cCcchhcCCCccchhhhcccc
Confidence 99999999995 332 455567889999999999888777 5679999999999998 4555432 21 125678
Q ss_pred CCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
+|+.|++..|.+.. -..+..+..+.+|+.|.+..+.+.
T Consensus 302 kL~~L~i~~N~I~~------w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 302 KLEYLNISENNIRD------WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cceeeecccCcccc------ccccchhhccchhhhhhccccccc
Confidence 99999999987631 134466666777777776665443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=6.9e-07 Score=102.65 Aligned_cols=105 Identities=25% Similarity=0.296 Sum_probs=84.1
Q ss_pred CCCEEEccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEc
Q 003193 281 NLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (840)
Q Consensus 281 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l 357 (840)
.++.|+|++|.+.. |..++++++|++|+|++|.++ .+|..++.+++|+.|++++|.....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47889999999876 788999999999999999987 88989999999999999996544567765 899999999999
Q ss_pred cCCcccceecCCCCCCcccccC-CCCCCeEEEecCCC
Q 003193 358 GNSFTQWKVEGQSNASLGELKQ-LSRLTTLEVHIPDA 393 (840)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~l~~-l~~L~~L~l~~~~~ 393 (840)
++|.+...++ ..+.. ..++..+++.+|..
T Consensus 498 s~N~l~g~iP-------~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVP-------AALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCC-------hHHhhccccCceEEecCCcc
Confidence 9998765444 33333 23566788877653
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.6e-07 Score=70.40 Aligned_cols=55 Identities=31% Similarity=0.459 Sum_probs=24.6
Q ss_pred CCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCC
Q 003193 258 ELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS 312 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~ 312 (840)
+|++|++++|.++.+| ..|.++++|++|++++|.+.. +..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444443 233444444444444444443 233444444444444444
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=9.6e-07 Score=92.45 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=16.6
Q ss_pred CCccEEEEecCCCcccccchhHHhhcccccEEEEeccccccee
Q 003193 532 SNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLI 574 (840)
Q Consensus 532 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 574 (840)
++++.|++++| .++.+|. -.++|++|.+.+|..+..+
T Consensus 52 ~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsL 88 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTL 88 (426)
T ss_pred cCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccC
Confidence 44445555554 4444431 1124555555555554443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=5.9e-07 Score=68.44 Aligned_cols=58 Identities=36% Similarity=0.556 Sum_probs=35.4
Q ss_pred CCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 303 KLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 303 ~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
+|++|++++|+++.+|. .+..+++|++|++++ +.++.++++.+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666653 445666666666665 55666666556666666666666553
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.24 E-value=2.3e-06 Score=89.70 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=33.0
Q ss_pred hhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccC
Q 003193 555 KNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGF 613 (840)
Q Consensus 555 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~ 613 (840)
..+.+++.|+|++| .++.++. ..++|++|.+.+|.+++.++.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~----------------LP~sLtsL~Lsnc~nLtsLP~ 90 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV----------------LPNELTEITIENCNNLTTLPG 90 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC----------------CCCCCcEEEccCCCCcccCCc
Confidence 44688999999999 6776651 234799999999999988765
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.08 E-value=3.6e-07 Score=100.33 Aligned_cols=128 Identities=27% Similarity=0.368 Sum_probs=91.9
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEee
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (840)
.+..+..+.+..|.+.. + ..-...+++|.+|++.+|.+..+...+..+++|++|++++|.|+....+..+..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~-~-~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-I-LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhh-h-hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 34555556666665542 1 121367788888888888888776557788888888888888888888888888888888
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCc-ccccCCCCCcEEEccCCcc
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~ 362 (840)
.+|.|+.++ .+..+++|+.+++++ +.+..+.. . ...+.+++.+++.+|.+
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCch
Confidence 888888775 355588888888888 55666654 1 36677788787777754
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=1.5e-06 Score=99.28 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=86.8
Q ss_pred ccCCCcEEEeccCCc--ccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCC
Q 003193 208 IDEAPTAISIPFRGI--YELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~--~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~ 283 (840)
...++++|++++... ..-+..+ .+|.|++|.+.+-.+...--..++.++++|+.||+++++++.+ .++++|++|+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 345688888877543 1122222 5889999998876554332334567888999999999998888 6888999999
Q ss_pred EEEccCCccCC---cccccCCCCCCEEeecCCCCcccChh-------hcCCCCCCEEEccC
Q 003193 284 TLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPRE-------IGQLTCLKLLDLSN 334 (840)
Q Consensus 284 ~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~-------i~~L~~L~~L~L~~ 334 (840)
+|.+.+-.+.. ...+.+|++|++||+|..+-..-+.- -..|++||.||.++
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 99888877665 46778888888888887644433311 12366666666665
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=4.3e-07 Score=99.69 Aligned_cols=172 Identities=21% Similarity=0.280 Sum_probs=121.7
Q ss_pred CCCcEEEeccCCcccCCc-ccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEcc
Q 003193 210 EAPTAISIPFRGIYELPE-RLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~ 288 (840)
..+..+++..|.+..+.. ...+.+|..+++.+|.+... ... +..+.+|++|++++|.|+.+. .+..+..|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccc-hhhhhcchheecccccccccc-chhhccchhhheec
Confidence 344555577777765333 33688999999998887632 221 367889999999999998874 57788889999999
Q ss_pred CCccCCcccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceec
Q 003193 289 NCLVVDVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 289 ~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
+|.+.....+..+.+|+.+++++|.++.+... ...+.+|+.+++.+ +.+..+.. +..+..+..+++..|.+..
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~~--- 222 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKISK--- 222 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhccccccee---
Confidence 99999888888899999999999998888764 57888999999888 55655543 4555555555666654421
Q ss_pred CCCCCCcccccCCCC--CCeEEEecCCCCCC
Q 003193 368 GQSNASLGELKQLSR--LTTLEVHIPDAQVM 396 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~--L~~L~l~~~~~~~~ 396 (840)
+..+..+.. |+.+++..+.+...
T Consensus 223 ------~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 223 ------LEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred ------ccCcccchhHHHHHHhcccCccccc
Confidence 122222222 67777777766554
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=9.6e-08 Score=92.41 Aligned_cols=84 Identities=31% Similarity=0.383 Sum_probs=41.8
Q ss_pred CCcEEEcCCCCCC--CCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCC
Q 003193 258 ELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNC 335 (840)
Q Consensus 258 ~Lr~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~ 335 (840)
.|++|||++..++ .+-.-+..+..|+.|.+.++.+.+ .+-..|.+=.+|+.|+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD---------------------~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD---------------------PIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc---------------------HHHHHHhccccceeeccccc
Confidence 3555566555554 233334444455555555544444 22233444455555666555
Q ss_pred CCCCccCcc-cccCCCCCcEEEccCCcc
Q 003193 336 SKLKEIRPN-VISNLTRLEELYMGNSFT 362 (840)
Q Consensus 336 ~~l~~~p~~-~l~~L~~L~~L~l~~~~~ 362 (840)
+.+++.... .+.+++.|+.|++++|..
T Consensus 245 sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 245 SGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred cccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 555443221 245566666666666643
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=4.3e-08 Score=105.72 Aligned_cols=176 Identities=20% Similarity=0.155 Sum_probs=123.2
Q ss_pred ccCCCcEEEeccCCcccCCcccC-CCcceeEeeccCc---------cccCCCchhhcCCCCCcEEEcCCCCCCCCChhhc
Q 003193 208 IDEAPTAISIPFRGIYELPERLG-FLKLKLFLFFTEN---------LSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG 277 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~~~---------~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~ 277 (840)
..+.+|+|-+.+++++....... -..|+.|...+.- ..+.+..++ ....|.+-+.++|.+..+-.++.
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLq 184 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQ 184 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHH
Confidence 35678888888888765332222 2234444443211 011111111 23467888889998888888888
Q ss_pred CCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEE
Q 003193 278 CLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356 (840)
Q Consensus 278 ~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~ 356 (840)
-+++|+.|+|++|++.+...+..+.+|++|||++|.++.+|.- ...+ +|+.|.+++ |.++.+-. +.+|++|+.|+
T Consensus 185 ll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL~g--ie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN-NALTTLRG--IENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc-cHHHhhhh--HHhhhhhhccc
Confidence 8999999999999999977899999999999999999988852 2223 499999998 67877754 78999999999
Q ss_pred ccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCC
Q 003193 357 MGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (840)
Q Consensus 357 l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 395 (840)
+++|-+... ..+.-|..|..|+.|.+.+|.+..
T Consensus 261 lsyNll~~h------seL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 261 LSYNLLSEH------SELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhHhhhhcc------hhhhHHHHHHHHHHHhhcCCcccc
Confidence 998865421 233445566678888888887643
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=6.3e-06 Score=57.24 Aligned_cols=37 Identities=41% Similarity=0.542 Sum_probs=18.0
Q ss_pred CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC
Q 003193 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD 294 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 294 (840)
+|++|++++|.++.+|+.+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555445555555555555554443
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.4e-05 Score=55.45 Aligned_cols=38 Identities=39% Similarity=0.631 Sum_probs=19.6
Q ss_pred CCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCcc
Q 003193 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341 (840)
Q Consensus 303 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~ 341 (840)
+|++|++++|+|+.+|..+++|++|++|++++ +.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCC
Confidence 45555555555555555555555555555555 344444
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.2e-07 Score=88.12 Aligned_cols=173 Identities=23% Similarity=0.189 Sum_probs=124.2
Q ss_pred CCCcEEEeccCCccc--CCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCC-CCC--CChhhcCCCCCC
Q 003193 210 EAPTAISIPFRGIYE--LPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHS--LPSSLGCLINLR 283 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~--lp~~l~~l~~L~ 283 (840)
..+++++++...++. +.... .|.+|+.|.+.++.....+-..+ .+-.+|+.|+++.+. +++ +.--+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 457889998877632 22222 68899999999888776555554 677899999999886 442 233467899999
Q ss_pred EEEccCCccCCc------ccccCCCCCCEEeecCCC--C--cccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCc
Q 003193 284 TLSLENCLVVDV------AIIGDLKKLEILSLKHSS--I--EQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (840)
Q Consensus 284 ~L~L~~~~~~~~------~~i~~L~~L~~L~l~~~~--l--~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~ 353 (840)
.|++++|.+..+ ..|+ .+|..|+++|+. + ..+..-..++++|.+|||++|..++.--...+.+++.|+
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 999999986652 2222 468888999872 2 233333578899999999998877764344478899999
Q ss_pred EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecC
Q 003193 354 ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIP 391 (840)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 391 (840)
+|.++.|... .+..+-+++..+.|.+|++.+.
T Consensus 342 ~lSlsRCY~i------~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDI------IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCC------ChHHeeeeccCcceEEEEeccc
Confidence 9999998642 2345567788888888888753
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.72 E-value=2.8e-06 Score=96.36 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=70.1
Q ss_pred Hhcccceeecccccccccc--ccccchhhcccccEEEeecC-CCeEEEEeC-CCccccccccceeecccccccccccccc
Q 003193 446 LKRTEDLHLDELAGFKNVV--HELDDEEGFARLRHLHVHNG-PEILHILNS-DGRVGTFPLLESLFLHNLINLEKVCDGK 521 (840)
Q Consensus 446 l~~L~~L~L~~~~~~~~~~--~~l~~~~~l~~L~~L~l~~~-~~l~~~~~~-~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 521 (840)
.++|+.|.+.++....... ... ...++|+.|++.++ ......... ......+++|+.|.+..+..+.+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA---LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH---hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 4677888888776655421 222 56788888888773 211111100 0112445777777777776544432211
Q ss_pred cccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEeccccc
Q 003193 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNL 571 (840)
Q Consensus 522 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l 571 (840)
+ ...+++|+.|.+.+|..+++..-......+++|++|++++|..+
T Consensus 264 l-----~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 264 L-----ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred H-----HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1 12367888888777877665544445567777888888887776
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=2.5e-05 Score=89.52 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=65.3
Q ss_pred CCcceeEeeccCcc-ccCCCchhhcCCCCCcEEEcCCCCCC--CCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEE
Q 003193 231 FLKLKLFLFFTENL-SLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307 (840)
Q Consensus 231 ~~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L 307 (840)
-.+|+.|++.+... ....|..+...+|.||.|.+++-.+. .+-.-..++++|+.||+++++++....+++|++||+|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 45677777766542 23345555566777777777776553 2233445667777777777777777777777777777
Q ss_pred eecCCCCcccC--hhhcCCCCCCEEEccC
Q 003193 308 SLKHSSIEQLP--REIGQLTCLKLLDLSN 334 (840)
Q Consensus 308 ~l~~~~l~~lp--~~i~~L~~L~~L~L~~ 334 (840)
.+.+=.+..-. ..+.+|++|++||++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 77654444222 3456677777777766
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.66 E-value=5.9e-06 Score=82.45 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=113.9
Q ss_pred CCcEEEeccCCcc--cCCc---cc-CCCcceeEeeccCccccCCC------------chhhcCCCCCcEEEcCCCCCCCC
Q 003193 211 APTAISIPFRGIY--ELPE---RL-GFLKLKLFLFFTENLSLQIP------------DPFFEGMTELRVLDLTGFRFHSL 272 (840)
Q Consensus 211 ~l~~L~l~~~~~~--~l~~---~~-~~~~L~~L~l~~~~~~~~~~------------~~~~~~l~~Lr~L~l~~~~~~~l 272 (840)
+++.++++.|.+. .++. .+ .+..|+.|.+.+|.+...-- ..-..+-+.||++...+|++..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 6788888888773 2222 12 57788888887776431100 01123456788888888887643
Q ss_pred C-----hhhcCCCCCCEEEccCCccCCc------ccccCCCCCCEEeecCCCCc-----ccChhhcCCCCCCEEEccCCC
Q 003193 273 P-----SSLGCLINLRTLSLENCLVVDV------AIIGDLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCS 336 (840)
Q Consensus 273 p-----~~l~~l~~L~~L~L~~~~~~~~------~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~ 336 (840)
+ ..+...+.|+.+.+..|.+... ..+..+++|+.|||+.|-++ .+...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3 3466677888888888876652 45678888888888888666 344556677888888888874
Q ss_pred CCCc----cCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 337 KLKE----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 337 ~l~~----~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
--.. +-...-...++|++|.+.+|.+...... .....+...+.|..|++++|...
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~---~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL---ALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHH---HHHHHHhcchhhHHhcCCccccc
Confidence 2221 1111113367888888888866532211 11122334678888888888764
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=1.2e-06 Score=95.06 Aligned_cols=123 Identities=19% Similarity=0.166 Sum_probs=60.3
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
+.++...++++|.+..+.... -++.++.|+++.|.+... +++..+.+|+.|||++|.+..+|.-=..--+|+.|.+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhhheeeee
Confidence 334555555555554444433 245555666655554421 1235555566666666655555431111112555555
Q ss_pred cCCccCCcccccCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEccC
Q 003193 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSN 334 (840)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~ 334 (840)
++|.++....|.+|++|+.||+++|-+.... .-++.|..|+.|.|.+
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 5555555555555555555555555433211 1134455555555555
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=5.9e-06 Score=70.89 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=63.2
Q ss_pred cEEEeccCCcccCCccc----CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEcc
Q 003193 213 TAISIPFRGIYELPERL----GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~ 288 (840)
..++++.+.+..+++.. +..+|...++++|.+. ..|+.+-.+++....|++++|.++.+|..+..++.||.|+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 34555555554443321 4455555666666554 455555556666666666666666666666666666666666
Q ss_pred CCccCC-cccccCCCCCCEEeecCCCCcccChh
Q 003193 289 NCLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE 320 (840)
Q Consensus 289 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~ 320 (840)
.|.+.. |..|..|.+|-+|+..+|.+.++|-.
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 666655 55555666666666666655555543
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=1.6e-05 Score=77.38 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=29.8
Q ss_pred hcCCCCCCEEEccCCCCCCccCcccc-cCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCC
Q 003193 321 IGQLTCLKLLDLSNCSKLKEIRPNVI-SNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (840)
Q Consensus 321 i~~L~~L~~L~L~~~~~l~~~p~~~l-~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 392 (840)
+.+|+.|++|+++. +.+...... + ..+.+|++|-+.+....|... -..+..++.++.|+++.|.
T Consensus 93 le~lP~l~~LNls~-N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~------~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 93 LEQLPALTTLNLSC-NSLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQS------TSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HhcCccceEeeccC-CcCCCcccc-CcccccceEEEEEcCCCCChhhh------hhhhhcchhhhhhhhccch
Confidence 34555555555554 222221111 1 133566666666655544321 1334555666666666553
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00016 Score=66.75 Aligned_cols=81 Identities=27% Similarity=0.361 Sum_probs=44.2
Q ss_pred cCCCCCcEEEcCCCCCCCCChhhcC-CCCCCEEEccCCccCC---cccccCCCCCCEEeecCCCCcccCh----hhcCCC
Q 003193 254 EGMTELRVLDLTGFRFHSLPSSLGC-LINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPR----EIGQLT 325 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~l~~-l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~ 325 (840)
..++.|.+|.+.+|+|+.+-+.+.. +++|..|.|.+|.+.. ..-+..++.|++|.+-+|.++.-+. -+.+++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 4455555555555555554333332 3346666666655444 3444555666666666665554332 256677
Q ss_pred CCCEEEccC
Q 003193 326 CLKLLDLSN 334 (840)
Q Consensus 326 ~L~~L~L~~ 334 (840)
+|++||..+
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 777777665
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.39 E-value=0.00035 Score=64.60 Aligned_cols=100 Identities=25% Similarity=0.291 Sum_probs=57.3
Q ss_pred CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccc-cCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEcc
Q 003193 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAII-GDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLS 333 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i-~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~ 333 (840)
....+|+++|.+..++ .+..++.|.+|.+.+|.|+. -+.+ ..+++|..|.+.+|+|.++. ..+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4456666666666553 35566677777777777666 2233 33456777777777666553 224556666666666
Q ss_pred CCCCCCccC---cccccCCCCCcEEEccC
Q 003193 334 NCSKLKEIR---PNVISNLTRLEELYMGN 359 (840)
Q Consensus 334 ~~~~l~~~p---~~~l~~L~~L~~L~l~~ 359 (840)
+ +.+.+-. .-.+.++++|++|++..
T Consensus 122 ~-Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 G-NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred C-CchhcccCceeEEEEecCcceEeehhh
Confidence 5 3332221 12356667777776654
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.35 E-value=3.2e-05 Score=87.74 Aligned_cols=222 Identities=21% Similarity=0.241 Sum_probs=125.9
Q ss_pred cccccceeecccccccccccccccccCCCCcccCCccEEEEecC-CCccccc--chhHHhhcccccEEEEecccccceee
Q 003193 499 TFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC-HRVKHLF--PFSLVKNLLQLQKVKVTDCTNLKLIV 575 (840)
Q Consensus 499 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~~L~~l~--~~~~~~~l~~L~~L~i~~c~~l~~~~ 575 (840)
..|.|+.|.+.+|..+.......+ ....+.|+.|++..| ......+ .......+++|+.|++..|..+.+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDAL-----ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHH-----HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 478888888888877765321111 346788888888873 3322221 12344567888888888887654443
Q ss_pred ccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEec
Q 003193 576 GKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKL 655 (840)
Q Consensus 576 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 655 (840)
.... ...+|+|+.|.+.+|+.++.-. +......+++|++|+|
T Consensus 261 l~~l-----------~~~c~~L~~L~l~~c~~lt~~g---------------------------l~~i~~~~~~L~~L~l 302 (482)
T KOG1947|consen 261 LSAL-----------ASRCPNLETLSLSNCSNLTDEG---------------------------LVSIAERCPSLRELDL 302 (482)
T ss_pred HHHH-----------HhhCCCcceEccCCCCccchhH---------------------------HHHHHHhcCcccEEee
Confidence 2111 1137788888888887654421 1122245788999999
Q ss_pred ccc-cchhhcccCCccccccCCCceEEEecc---cCCcceeechhhHhhh-cccceeeecccccchhhhccCcccccCcc
Q 003193 656 SSI-NVEKIWLNSFSAIESWGKNLTKLTVEK---CGRLKFLFSSSMVNGL-EQLQQLDISHCKSMNEVINTRVGRDDNMI 730 (840)
Q Consensus 656 ~~c-~l~~~~~~~~~~~~~~l~~L~~L~i~~---C~~L~~l~~~~~~~~l-~sL~~L~i~~C~~L~~i~~~~~~~~~~~~ 730 (840)
++| .+++-..... ...+++|+.|.+.. |+.++.+......... ..+..+.+.+|++++.+.. ....
T Consensus 303 ~~c~~~~d~~l~~~---~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l--~~~~---- 373 (482)
T KOG1947|consen 303 SGCHGLTDSGLEAL---LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSL--SYCG---- 373 (482)
T ss_pred ecCccchHHHHHHH---HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhh--hhhh----
Confidence 988 5533211111 12356555554444 4456655221111112 2678888888888876632 1100
Q ss_pred cccccccc-ccccccCCcce-eecCCCCccCCCcceEEeccCCCccee
Q 003193 731 EMVFPKLV-SLQLSHLPKLT-RFGIGDSVEFPSLCQLQIACCPNLKIF 776 (840)
Q Consensus 731 ~~~l~sL~-~L~i~~c~~L~-~l~~~~~~~l~sL~~L~i~~C~~L~~l 776 (840)
..... .+.+.+|++|+ .+... .....+|+.|.+..|......
T Consensus 374 ---~~~~~~~~~l~gc~~l~~~l~~~-~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 374 ---ISDLGLELSLRGCPNLTESLELR-LCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred ---ccCcchHHHhcCCcccchHHHHH-hccCCccceEecccCcccccc
Confidence 11222 56778888883 33211 113344899999999866554
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.18 E-value=6.5e-05 Score=64.69 Aligned_cols=90 Identities=24% Similarity=0.319 Sum_probs=62.3
Q ss_pred cCCCCCcEEEcCCCCCCCCChhhcCC-CCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEE
Q 003193 254 EGMTELRVLDLTGFRFHSLPSSLGCL-INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~l~~l-~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 331 (840)
.+..+|...++++|.+..+|+.|... +.+..|++++|.+.+ |..+..++.|+.|+++.|.+...|.-|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 44556777777777777777766543 367777777777777 6667777777777777777777777777777777777
Q ss_pred ccCCCCCCccCcc
Q 003193 332 LSNCSKLKEIRPN 344 (840)
Q Consensus 332 L~~~~~l~~~p~~ 344 (840)
..+ +....+|..
T Consensus 130 s~~-na~~eid~d 141 (177)
T KOG4579|consen 130 SPE-NARAEIDVD 141 (177)
T ss_pred CCC-CccccCcHH
Confidence 666 455555543
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00014 Score=70.97 Aligned_cols=85 Identities=24% Similarity=0.185 Sum_probs=41.7
Q ss_pred CCCcceeEeeccCcccc-CCCchhhcCCCCCcEEEcCCCCCCCCChhh-cCCCCCCEEEccCCccCC---cccccCCCCC
Q 003193 230 GFLKLKLFLFFTENLSL-QIPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLENCLVVD---VAIIGDLKKL 304 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l-~~l~~L~~L~L~~~~~~~---~~~i~~L~~L 304 (840)
.+..++.+++.+|.++. .-...++.++++|++|+++.|++...-.++ ..+.+|++|-|.++.+.. -.....++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34555555555555431 111233456666666666666554221111 234566666666655443 2344455555
Q ss_pred CEEeecCCCC
Q 003193 305 EILSLKHSSI 314 (840)
Q Consensus 305 ~~L~l~~~~l 314 (840)
+.|.++.|++
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 5555555533
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.13 E-value=0.00019 Score=72.01 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=68.1
Q ss_pred ccCCCcEEEeccCCcccCCcc-----c-CCCcceeEeeccCccccC---CCchhhcCCCCCcEEEcCCCCCCC-----CC
Q 003193 208 IDEAPTAISIPFRGIYELPER-----L-GFLKLKLFLFFTENLSLQ---IPDPFFEGMTELRVLDLTGFRFHS-----LP 273 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~-----~-~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~Lr~L~l~~~~~~~-----lp 273 (840)
...++|.+....|.+..-+.. + ..+.|+.+.+..|.+... ....-|..+++|++|||..|.++. +.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 345666776776666443321 1 345666666666654321 111224566777777777776652 34
Q ss_pred hhhcCCCCCCEEEccCCccCC--ccc-----ccCCCCCCEEeecCCCCc-----ccChhhcCCCCCCEEEccC
Q 003193 274 SSLGCLINLRTLSLENCLVVD--VAI-----IGDLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~--~~~-----i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~ 334 (840)
..++.+++||.|++++|.+.. ... -...++|++|.+.+|.|+ .+-..+...+.|+.|+|++
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 455566677777777776555 111 112456666666666555 1222334455555555555
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.96 E-value=0.00036 Score=67.35 Aligned_cols=87 Identities=25% Similarity=0.324 Sum_probs=51.2
Q ss_pred cCCCCCcEEEcCCCCCCC-----CChhhcCCCCCCEEEccCCccCC-----c-------ccccCCCCCCEEeecCCCCc-
Q 003193 254 EGMTELRVLDLTGFRFHS-----LPSSLGCLINLRTLSLENCLVVD-----V-------AIIGDLKKLEILSLKHSSIE- 315 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~~~-----~-------~~i~~L~~L~~L~l~~~~l~- 315 (840)
..+..+..++||||.+.+ +...|.+-.+|+..+++.-.... + +.+-++++|+..+|+.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 346778888999988762 45556667788888877543211 1 23455666666666666443
Q ss_pred ccC----hhhcCCCCCCEEEccCCCCCCcc
Q 003193 316 QLP----REIGQLTCLKLLDLSNCSKLKEI 341 (840)
Q Consensus 316 ~lp----~~i~~L~~L~~L~L~~~~~l~~~ 341 (840)
+.| .-|.+-+.|.||.+++ +.++.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~N-nGlGp~ 135 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNN-NGLGPI 135 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeec-CCCCcc
Confidence 222 2345556666666665 344433
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.23 E-value=0.0018 Score=62.79 Aligned_cols=81 Identities=28% Similarity=0.448 Sum_probs=38.4
Q ss_pred cCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCC--ccCC--cccccCCCCCCEEeecCCCCcccC--hhhcCCCCC
Q 003193 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC--LVVD--VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCL 327 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~--~~~~--~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L 327 (840)
..+..|..|++.+..++++- .+-.|++|++|.++.| .+.. +....++++|++|++++|+++.+- ..+.++.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34445555555555544331 2334556666666666 2222 223334466666666666544210 113444555
Q ss_pred CEEEccCC
Q 003193 328 KLLDLSNC 335 (840)
Q Consensus 328 ~~L~L~~~ 335 (840)
..|++.+|
T Consensus 119 ~~Ldl~n~ 126 (260)
T KOG2739|consen 119 KSLDLFNC 126 (260)
T ss_pred hhhhcccC
Confidence 55555554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.00025 Score=68.67 Aligned_cols=78 Identities=27% Similarity=0.417 Sum_probs=39.5
Q ss_pred CCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCc-ccccCCCCCcEEEccC
Q 003193 281 NLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGN 359 (840)
Q Consensus 281 ~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~ 359 (840)
+.+.|+..+|.+.++....+++.|++|.|+-|+|+.|.. +..+++|+.|+|.. |.+..+.+ .-+.++++|++|++..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhcc
Confidence 344455555555554445555555555555555555532 45555555555555 33433322 1134556666666655
Q ss_pred C
Q 003193 360 S 360 (840)
Q Consensus 360 ~ 360 (840)
|
T Consensus 98 N 98 (388)
T KOG2123|consen 98 N 98 (388)
T ss_pred C
Confidence 4
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.0038 Score=60.64 Aligned_cols=82 Identities=24% Similarity=0.291 Sum_probs=50.3
Q ss_pred cCCCCCcEEEcCCCC--CC-CCChhhcCCCCCCEEEccCCccCC---cccccCCCCCCEEeecCCCCcccC----hhhcC
Q 003193 254 EGMTELRVLDLTGFR--FH-SLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLP----REIGQ 323 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~--~~-~lp~~l~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp----~~i~~ 323 (840)
-.+++|+.|.++.|. +. .++....++++|++|++++|++.. .....++.+|..|++..|..+.+- ..+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 345566666666663 22 344444555777777777776654 344556667777777777666542 22456
Q ss_pred CCCCCEEEccCC
Q 003193 324 LTCLKLLDLSNC 335 (840)
Q Consensus 324 L~~L~~L~L~~~ 335 (840)
+++|.+||-..+
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 778888876653
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.83 E-value=0.0038 Score=35.86 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=13.7
Q ss_pred CCCEEeecCCCCcccChhhcC
Q 003193 303 KLEILSLKHSSIEQLPREIGQ 323 (840)
Q Consensus 303 ~L~~L~l~~~~l~~lp~~i~~ 323 (840)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777765544
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.0015 Score=60.64 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=3.9
Q ss_pred ceEecccccc
Q 003193 651 KKLKLSSINV 660 (840)
Q Consensus 651 ~~L~l~~c~l 660 (840)
+.++-+++.+
T Consensus 104 eaVDAsds~I 113 (221)
T KOG3864|consen 104 EAVDASDSSI 113 (221)
T ss_pred EEEecCCchH
Confidence 3334444433
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.00091 Score=64.92 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=38.9
Q ss_pred CCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC---cccccCCCCCCEE
Q 003193 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEIL 307 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L 307 (840)
+.+.+.|++.++.+.. -++..+|+.|+||.|+-|.++++- .+..+++|+.|.|+.|.|.+ ..-+.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3445555555555432 123456666666666666666552 34555555555555555444 2233344444444
Q ss_pred eecC
Q 003193 308 SLKH 311 (840)
Q Consensus 308 ~l~~ 311 (840)
.|..
T Consensus 94 WL~E 97 (388)
T KOG2123|consen 94 WLDE 97 (388)
T ss_pred hhcc
Confidence 4443
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.0055 Score=57.05 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=49.0
Q ss_pred ccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccc
Q 003193 498 GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLK 572 (840)
Q Consensus 498 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~ 572 (840)
..++.++.|.+.+|..+.+|+.+.+. +-+|+|+.|+|++|+.+++- ....+..+++|+.|.+.+.+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~-----~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG-----GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc-----ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 45667788888888888888755444 36788999999989888875 33445667777777776655443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.04 E-value=0.0066 Score=34.88 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=12.7
Q ss_pred CCcEEEcCCCCCCCCChhhcC
Q 003193 258 ELRVLDLTGFRFHSLPSSLGC 278 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~ 278 (840)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.81 E-value=0.025 Score=55.08 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=58.8
Q ss_pred CCCcceeEeeccCccccCCCc---hhhcCCCCCcEEEcCCCCCC----CCC-------hhhcCCCCCCEEEccCCccCC-
Q 003193 230 GFLKLKLFLFFTENLSLQIPD---PFFEGMTELRVLDLTGFRFH----SLP-------SSLGCLINLRTLSLENCLVVD- 294 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~Lr~L~l~~~~~~----~lp-------~~l~~l~~L~~L~L~~~~~~~- 294 (840)
.+..+..+++++|.+...-.. ..+.+-++|++.+++.-... .+| +.+-+|++|+..+|+.|-+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 467788888888876543222 22355677888877765322 223 345678888999998887665
Q ss_pred -c----ccccCCCCCCEEeecCCCCccc
Q 003193 295 -V----AIIGDLKKLEILSLKHSSIEQL 317 (840)
Q Consensus 295 -~----~~i~~L~~L~~L~l~~~~l~~l 317 (840)
| ..|++-+.|.+|.+++|.+-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 3 3567778888888888876533
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.22 E-value=0.033 Score=29.56 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=7.3
Q ss_pred CCCEEeecCCCCcccC
Q 003193 303 KLEILSLKHSSIEQLP 318 (840)
Q Consensus 303 ~L~~L~l~~~~l~~lp 318 (840)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665554
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.89 E-value=0.16 Score=45.35 Aligned_cols=103 Identities=17% Similarity=0.326 Sum_probs=42.4
Q ss_pred chhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCC
Q 003193 250 DPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLT 325 (840)
Q Consensus 250 ~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~ 325 (840)
...|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +.. ...+.++.+|+.+.+.. .+..++. .+..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34455555566665553 344442 23455555666665543 333 23455555566666644 3444433 234456
Q ss_pred CCCEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 326 CLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 326 ~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
+|+.+++.. .+..++...+.+. +|+.+.+.
T Consensus 82 ~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 666666643 2445555445554 56655544
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.66 E-value=0.18 Score=44.96 Aligned_cols=115 Identities=16% Similarity=0.275 Sum_probs=59.6
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCE
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (840)
.+.+|+.+.+.. . ...++...|..+..|+.+.+.++ +..++ ..+.++..|+.+.+.+ .+.. ...+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 456777777763 2 22566667788888888888774 66554 3467777888888865 3333 456677888999
Q ss_pred EeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCC
Q 003193 307 LSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352 (840)
Q Consensus 307 L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L 352 (840)
+++..+ ++.++. .+.+. +|+.+.+.. .+..++...+.+.++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 998764 666654 35565 888888764 5666776667666665
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.06 E-value=0.058 Score=28.63 Aligned_cols=16 Identities=56% Similarity=0.860 Sum_probs=7.3
Q ss_pred CCcEEEcCCCCCCCCC
Q 003193 258 ELRVLDLTGFRFHSLP 273 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp 273 (840)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666665554
No 78
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.08 E-value=0.79 Score=56.56 Aligned_cols=150 Identities=13% Similarity=0.229 Sum_probs=92.6
Q ss_pred eEEcc----CCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCCCCC
Q 003193 9 DFLDW----LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRK 84 (840)
Q Consensus 9 ~~~l~----~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~ 84 (840)
..++. .++.+|+-++|....+..-. .+...+|.+.|+|.|+++..++..++..... -......+.......
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 250 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASH 250 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchh
Confidence 34555 89999999999876553222 3556789999999999999998877643210 011111111000001
Q ss_pred cccccccccce-eecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhhccc
Q 003193 85 IQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASL 163 (840)
Q Consensus 85 ~~~~~~~~~~l-~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~L~~~~l 163 (840)
+ ...+ .--++.||++ .+..+...|+++ .++.+ +...- .+.. + ..+.+++|.+.++
T Consensus 251 ~------~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~~l-----~~~~----~----~~~~L~~l~~~~l 306 (903)
T PRK04841 251 L------SDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIVRV-----TGEE----N----GQMRLEELERQGL 306 (903)
T ss_pred H------HHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHHHH-----cCCC----c----HHHHHHHHHHCCC
Confidence 1 1111 2237799998 999999999987 35533 22211 1111 1 2347888888998
Q ss_pred ccc-CC-CCCceEeehhHHHHHHHHH
Q 003193 164 LFD-GD-SEDHAKMHRIIHAIAVSIA 187 (840)
Q Consensus 164 ~~~-~~-~~~~~~mhdli~~l~~~i~ 187 (840)
|.. .+ ....|+.|++++++.+...
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHH
Confidence 753 22 3347899999999988754
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.66 E-value=0.0069 Score=57.40 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=40.5
Q ss_pred CCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEcc
Q 003193 255 GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~ 333 (840)
.++...+||++.|++..+-..++.+..|..|+++.|.+.. |..++.+..++.+++..|+.+..|.+.+++++++++++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 3444555555555544444444444555555555554444 444555555555555555555555555555555555544
Q ss_pred C
Q 003193 334 N 334 (840)
Q Consensus 334 ~ 334 (840)
+
T Consensus 120 ~ 120 (326)
T KOG0473|consen 120 K 120 (326)
T ss_pred c
Confidence 4
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.94 E-value=0.27 Score=29.45 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=11.9
Q ss_pred CCCCEEeecCCCCcccChh
Q 003193 302 KKLEILSLKHSSIEQLPRE 320 (840)
Q Consensus 302 ~~L~~L~l~~~~l~~lp~~ 320 (840)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.94 E-value=0.27 Score=29.45 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=11.9
Q ss_pred CCCCEEeecCCCCcccChh
Q 003193 302 KKLEILSLKHSSIEQLPRE 320 (840)
Q Consensus 302 ~~L~~L~l~~~~l~~lp~~ 320 (840)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.86 E-value=0.027 Score=53.51 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=75.2
Q ss_pred hhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCc
Q 003193 275 SLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~ 353 (840)
.+.....-.+||++.|++.. -..++.++.|..||++.|.+..+|...+++..++++++.. +.....|.. +++++.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s-~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS-QKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-ccccCCcc
Confidence 46677889999999998777 6778889999999999999999999999999999999887 778889988 79999999
Q ss_pred EEEccCCcc
Q 003193 354 ELYMGNSFT 362 (840)
Q Consensus 354 ~L~l~~~~~ 362 (840)
.++..++.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 998877653
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.75 E-value=0.82 Score=27.34 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=14.8
Q ss_pred CCCCcEEEcCCCCCCCCChhh
Q 003193 256 MTELRVLDLTGFRFHSLPSSL 276 (840)
Q Consensus 256 l~~Lr~L~l~~~~~~~lp~~l 276 (840)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777653
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.75 E-value=0.82 Score=27.34 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=14.8
Q ss_pred CCCCcEEEcCCCCCCCCChhh
Q 003193 256 MTELRVLDLTGFRFHSLPSSL 276 (840)
Q Consensus 256 l~~Lr~L~l~~~~~~~lp~~l 276 (840)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777653
No 85
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=79.97 E-value=24 Score=37.31 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=62.5
Q ss_pred ceEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCCCCCccc
Q 003193 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQG 87 (840)
Q Consensus 8 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~ 87 (840)
..+++++++++|..+++.+.+......-+ .+....|++.|+|.|=.+..+...+ ..|..+.+ ...+..
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~-~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~------~~~I~~ 240 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVEID-EEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG------DGVITK 240 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC------CCCCCH
Confidence 46899999999999999998763222111 4678899999999995444444322 12211100 001110
Q ss_pred --ccccccceeecccccCchhhhhHHH-hccCCCCCCccCHHHHH
Q 003193 88 --MDADLSSIELSYEFLKCKEVKSLFQ-LCGLLKDGSRIAVDDLL 129 (840)
Q Consensus 88 --~~~~~~~l~lSY~~L~~~~lk~cfl-~~~~fp~~~~i~~~~li 129 (840)
.......+...|..|+.. .+.-+. ....|+.+ .+..+.+.
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a 283 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLA 283 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHH
Confidence 011144466777888776 555443 55666655 45555553
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=77.81 E-value=1.1 Score=26.90 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=9.5
Q ss_pred CCceEEEecccCCcce
Q 003193 676 KNLTKLTVEKCGRLKF 691 (840)
Q Consensus 676 ~~L~~L~i~~C~~L~~ 691 (840)
++|++|+|++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4556666666666554
No 87
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=75.94 E-value=11 Score=38.42 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=52.3
Q ss_pred ceEEccCCCHHHHHHHHHHHhC--CCCCCCch-hhHHHHHHHHhCCCchhHHHHHHHh------cC-C--CHHHHHHHHH
Q 003193 8 EDFLDWLLSNEEASHLFEKIVG--HSAKKSDF-ETIGVEIVAKCGGLPIAIKTIANAL------KN-K--SPRIWKDAVN 75 (840)
Q Consensus 8 ~~~~l~~L~~~~s~~Lf~~~a~--~~~~~~~~-~~i~~~i~~~c~GlPLai~~~g~~L------~~-~--~~~~W~~~l~ 75 (840)
..+++++++.+|..+++...+. +......+ .+..+.|++.++|.|..|..++..+ .+ + +.+.++.++.
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4678999999999999987653 22222223 5789999999999999999999887 11 1 6677777776
Q ss_pred Hh
Q 003193 76 QL 77 (840)
Q Consensus 76 ~l 77 (840)
.+
T Consensus 265 ~~ 266 (269)
T TIGR03015 265 EI 266 (269)
T ss_pred Hh
Confidence 54
No 88
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=75.07 E-value=30 Score=36.10 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=73.4
Q ss_pred ceEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhc------C--C-CHHHHHHHHHHhh
Q 003193 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALK------N--K-SPRIWKDAVNQLS 78 (840)
Q Consensus 8 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~------~--~-~~~~W~~~l~~l~ 78 (840)
..+++++++++|..+++.+.+......-+ .+....|++.|+|.|=.+..++..+. + + +.+..+.+
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~~~-~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~----- 225 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVEIE-PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKA----- 225 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHH-----
Confidence 46899999999999999988753222111 46778899999999966654444321 0 0 22222222
Q ss_pred cCCCCCcccccccccceeecccccCchhhhhHHH-hccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHH-
Q 003193 79 NSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQ-LCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLID- 156 (840)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~lSY~~L~~~~lk~cfl-~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~- 156 (840)
...+..+|+.++.+ .+.-+. ..+.+..+ .+..+++.... |- + .. .....++
T Consensus 226 -------------l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--~---~~----~~~~~~e~ 278 (305)
T TIGR00635 226 -------------LEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--D---AD----TIEDVYEP 278 (305)
T ss_pred -------------HHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---CC--C---cc----hHHHhhhH
Confidence 22255678888876 554443 44555543 45554444322 10 0 11 1223456
Q ss_pred HHhhccccccC
Q 003193 157 NLKSASLLFDG 167 (840)
Q Consensus 157 ~L~~~~l~~~~ 167 (840)
.|++++++...
T Consensus 279 ~Li~~~li~~~ 289 (305)
T TIGR00635 279 YLLQIGFLQRT 289 (305)
T ss_pred HHHHcCCcccC
Confidence 58888988643
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.49 E-value=3.5 Score=24.65 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=14.1
Q ss_pred CCCcEEEcCCCCCCCCCh
Q 003193 257 TELRVLDLTGFRFHSLPS 274 (840)
Q Consensus 257 ~~Lr~L~l~~~~~~~lp~ 274 (840)
.+|++|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357888888888888876
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.32 E-value=4.6 Score=24.22 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=8.4
Q ss_pred CCCCEEeecCCCCcc
Q 003193 302 KKLEILSLKHSSIEQ 316 (840)
Q Consensus 302 ~~L~~L~l~~~~l~~ 316 (840)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455666666665543
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=65.15 E-value=0.091 Score=58.04 Aligned_cols=178 Identities=20% Similarity=0.165 Sum_probs=95.0
Q ss_pred CcEEEeccCCcccCCc-----cc-CCCcceeEeeccCccccCCCchh---hcCC-CCCcEEEcCCCCCCC-----CChhh
Q 003193 212 PTAISIPFRGIYELPE-----RL-GFLKLKLFLFFTENLSLQIPDPF---FEGM-TELRVLDLTGFRFHS-----LPSSL 276 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~-----~~-~~~~L~~L~l~~~~~~~~~~~~~---~~~l-~~Lr~L~l~~~~~~~-----lp~~l 276 (840)
+.++++.+|.+..-.. .. ..+.|..|++.+|++...--..+ +... ..|++|++..|.++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566666666633221 11 46667777777776542211111 1121 446667777776652 45566
Q ss_pred cCCCCCCEEEccCCccCC------cccc----cCCCCCCEEeecCCCCcc-----cChhhcCCCC-CCEEEccCCCCCCc
Q 003193 277 GCLINLRTLSLENCLVVD------VAII----GDLKKLEILSLKHSSIEQ-----LPREIGQLTC-LKLLDLSNCSKLKE 340 (840)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~------~~~i----~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~-L~~L~L~~~~~l~~ 340 (840)
....+++.++++.|.+.. +..+ ....++++|++++|.++. +-..+...++ ++.|++.. +.+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-NKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-cCcch
Confidence 667778888888776533 1222 346677788887776652 1122334444 55567666 34432
Q ss_pred c-----CcccccCC-CCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 341 I-----RPNVISNL-TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 341 ~-----p~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
. .+. +..+ ..++++++..|.+...-. ......+.....++.+.++.|.+.
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~---~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITEKGV---RDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCccccch---HHHHHHHhhhHHHHHhhcccCccc
Confidence 2 222 3444 566777777776542211 111233444556667777766544
No 92
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.84 E-value=7.4 Score=22.58 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=6.3
Q ss_pred CCcceEecccccch
Q 003193 648 PSLKKLKLSSINVE 661 (840)
Q Consensus 648 ~~L~~L~l~~c~l~ 661 (840)
++|++|+|++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555555555444
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.16 E-value=17 Score=22.13 Aligned_cols=13 Identities=38% Similarity=0.427 Sum_probs=6.9
Q ss_pred CCCEEEccCCccC
Q 003193 281 NLRTLSLENCLVV 293 (840)
Q Consensus 281 ~L~~L~L~~~~~~ 293 (840)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 94
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=25.38 E-value=2.6e+02 Score=23.31 Aligned_cols=60 Identities=5% Similarity=0.094 Sum_probs=44.9
Q ss_pred HHHHHHHH--HhC--CCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCC--CHHHHHHHHHHhh
Q 003193 19 EASHLFEK--IVG--HSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK--SPRIWKDAVNQLS 78 (840)
Q Consensus 19 ~s~~Lf~~--~a~--~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~--~~~~W~~~l~~l~ 78 (840)
|.|++=+. ..| +-.|.|....-|-+..++..-.|+|+..+-+.=.+- ..+.|..+++.++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeik 87 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIK 87 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHh
Confidence 67777332 233 557888888999999999999999999998765322 4567888888764
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=23.54 E-value=1.8e+02 Score=28.79 Aligned_cols=51 Identities=6% Similarity=0.011 Sum_probs=37.8
Q ss_pred CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHH
Q 003193 5 EYSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIK 56 (840)
Q Consensus 5 ~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~ 56 (840)
+...+++++++++++.|++++++|+.....-+ +++.+-|++++.|-.=++.
T Consensus 151 ~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~-~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 151 TWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS-DEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred hcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhccCCHHHHH
Confidence 44568999999999999999999973322222 5777888888887655443
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.74 E-value=31 Score=38.11 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=21.9
Q ss_pred HHHhcccceeeccccccccccccccchhhcccccEEEeecCCCe
Q 003193 444 MLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEI 487 (840)
Q Consensus 444 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l 487 (840)
...|+|+.|+|+++...-....++.. -+...|++|.+.+++-.
T Consensus 241 q~apklk~L~LS~N~~~~~~~~el~K-~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSESELDK-LKGLPLEELVLEGNPLC 283 (585)
T ss_pred Hhcchhheeecccchhhhcchhhhhh-hcCCCHHHeeecCCccc
Confidence 33566777777766332222233322 23345666666666643
Done!